Citrus Sinensis ID: 010200

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-----
Protein Sequence
MNRIIVGRLSVNVSGLRVLQRSFCSSVAEKASSSNSGQPSSESEVKQSFTNNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQRLPLPLPLFT
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccEEEEcccHHHHHHHHHHcccccccccEEEEEcccccccccccccccccccccEEEccHHHHHHHHHcccHHHHHHHHcccccEEEEEccccccEEEEEcccccccccEEEEccHHHHHHHHHHHHcccccEEEEccEEEEEEEccccccccccccccccccccccccEEEEcccccEEEEcEEEEEcccccHHHHHHcccccccccccEEEEEEEEEcccccEEEEEEcccccEEEcccccccEEEEEcccHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccHHHHccccEEEEccccccccccHHHHHHHcHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHcccHHHHHccHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEccHHHHHHHHHHHHccccccccEEEEEEccccccccccccccccccccEEEccHHHHHHHHHcccHHHHHHHHccHHcccEEEcccccEEEEEcHHHccccHHcHEHHHHHHHHHHHHHHHHccccEEEcccHEEEEEccccccEEEcccccccHHcccccccEEEEEccccEEEEEEEEEcccccHHHHHHccccccccccccEEEEEEEEEccccccEEEEEcccccEEEEcccccccEEEEEccHHHHHHHHcccHHHHHHHHHHHHccccccccHHHcccHHHHHHHHHHccccccccccccccEEEEEccccccccccHHHHHHHHcccEEEEcccHccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
MNRIIVGRLSVNVSGLRVLQRSFCSSVAekasssnsgqpssesevkqsftnnddqydvAVVGGGMVGMALACSlasmpltkHLSVAIidsnpalgksnfikkedppdprvstvtpaTISFFKEIGAWQYVQQHRHAYFDKMqvwdytglgytkynardvNKEILGCVVENKVLHSSLLScmqntefqktiypsrltsmallpssssisvdstpsattlftkghlakldlsdgtsLYAKLVVGADGGKSRVRELAGfkttgwsysQNAIICTVEHNKENYCAWqrflpagpiallpigdnfsnivwtmnpkdasdcksmneDDFVKILNHAldygygphpksissgsvdmfswfrgdatlsakecfevpprVVKLASermvfplslkhannyvsKRVVLIGDaahtvhplagqgvnlgfgdasTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQkaysvdfgplNILRAAAFHgaqyisplkrniisyasgeqrlplplplft
Flexible Loop (DISEMBL)
mnriivgrlsvnvsglrVLQRSFCSSVAEkasssnsgqpssesEVKQSFTNNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKsnfikkedppdprvSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLvvgadggksRVRELAgfkttgwsysqNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISyasgeqrlplplplft
Low Complexity Region (SEG)
MNRIIVGRLSVNVSGLRVLQRsfcssvaekasssnsgqpssesEVKQSFTNNDDQYDvavvgggmvgmaLACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRltsmallpssssisvdstpsatTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQRLPLPLPLFT
Disordered region (IsUnstruct)
***IIVGRLSVNVSGLRVLQRSFC******************************QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP*******************TVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLT********************TLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYAS*************
Disordered Region (DISOPRED)
*********S*NVSGLRVLQRSFCSSVA***************************YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL**********PPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQRLPLPLPL**
Disordered Region (DISEMBL)
MNRIIVGRLSVNVSGLRVLQRSFC************************FTNNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPS**********SATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQRLPLPLPLFT
Disordered Region (DISPRO)
*NRIIVGRLSVNVSGLRVLQRSFCSSVAEKASSSNS****************DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQRLPLPLPLFT
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNRIIVGRLSVNVSGLRVLQRSFCSSVAEKASSSNSGQPSSESEVKQSFTNNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQRLPLPLPLFT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	515	2.2.26 [Sep-21-2011]
Q6DF46	464	Ubiquinone biosynthesis m	yes	no	0.825	0.915	0.345	3e-72
F1RAX8	484	Ubiquinone biosynthesis m	yes	no	0.893	0.950	0.325	1e-70
Q8R1S0	476	Ubiquinone biosynthesis m	yes	no	0.889	0.962	0.347	7e-67
Q68FU7	476	Ubiquinone biosynthesis m	yes	no	0.846	0.915	0.352	5e-66
Q9Y2Z9	468	Ubiquinone biosynthesis m	yes	no	0.844	0.929	0.342	2e-65
Q2KIL4	469	Ubiquinone biosynthesis m	yes	no	0.833	0.914	0.353	4e-64
Q54EN1	495	Ubiquinone biosynthesis m	yes	no	0.869	0.905	0.323	3e-60
O01884	451	Probable ubiquinone biosy	yes	no	0.842	0.962	0.295	2e-56
P25535	400	Protein VisC OS=Escherich	N/A	no	0.757	0.975	0.303	2e-54
P75728	391	2-octaprenyl-3-methyl-6-m	N/A	no	0.735	0.969	0.298	1e-52

>sp|Q6DF46|COQ6_XENTR Ubiquinone biosynthesis monooxygenase COQ6 OS=Xenopus tropicalis GN=coq6 PE=2 SV=1

 Score =  273 bits (697), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 157/454 (34%), Positives = 256/454 (56%), Gaps = 29/454 (6%)

Query: 56  YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTP 115
           YDV + GGGMVG A+AC+L S P  +H  V ++++     +  F    +    RVS++TP
Sbjct: 32  YDVVISGGGMVGTAMACALGSDPHLQHKKVLLLEAG---NRKPFDHLPENFSNRVSSITP 88

Query: 116 ATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHS 175
            + +     GAW ++   R   + +MQVWD        ++   +  E +G +VEN ++  
Sbjct: 89  GSATLLASFGAWDHILAMRLKPYKRMQVWDACSDALITFDKDAL--EDMGYIVENDIIIE 146

Query: 176 SLLSCMQ-NTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTS 234
           +L   ++  ++  + +Y SR  S +  P  ++    +TP            +++L+DG  
Sbjct: 147 ALTKQLELMSDHVEVMYRSRALSYSWPPPYNN--GKATP----------WVEIELADGQR 194

Query: 235 LYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK--ENYCAWQRFLPAGPIA 292
           L+ KL++GADG  S VR  AG ++  W+Y+  A++ T+  ++  +N  AWQRFLP GPIA
Sbjct: 195 LHTKLLIGADGHNSMVRSAAGMQSVQWNYNHAAVVATLHLSEATDNNVAWQRFLPTGPIA 254

Query: 293 LLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISS-GSV--DM 349
           LLP+ D  S++VW+ +P+ AS+  SM+E+ FV  +N A  +    H + I+S GS+    
Sbjct: 255 LLPLSDTCSSLVWSTSPEHASELVSMDEESFVDTVNSAF-WSNENHSEFITSAGSLLHSA 313

Query: 350 FSWFRGDATLSAKECFEVPPRVVKLA-SERMVFPLSLKHANNYVSKRVVLIGDAAHTVHP 408
            S+F      +     ++PP V ++  + R  FPL LKHA  Y+  RV LIGDAAH VHP
Sbjct: 314 LSFFMP----TGSSPRQLPPSVSRVEQNSRASFPLGLKHATEYIRHRVALIGDAAHRVHP 369

Query: 409 LAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKA 468
           LAGQGVN+GFGD + L+  +++    G+D+G    L +YE ER+  N+ +MA +D  ++ 
Sbjct: 370 LAGQGVNMGFGDVACLAHHLSQAAFNGSDLGSTKHLLEYETERQRHNLPLMAAVDLLKRL 429

Query: 469 YSVDFGPLNILRAAAFHGAQYISPLKRNIISYAS 502
           Y+    P+ +LR         ++P+K  I+++AS
Sbjct: 430 YNTKQPPIVLLRTLGLQATNALTPVKEQIMAFAS 463

Xenopus tropicalis (taxid: 8364)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 3EC: .EC: -

>sp|F1RAX8|COQ6_DANRE Ubiquinone biosynthesis monooxygenase COQ6 OS=Danio rerio GN=coq6 PE=2 SV=1

 Score =  267 bits (683), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 165/507 (32%), Positives = 269/507 (53%), Gaps = 47/507 (9%)

Query: 6   VGRLSVNV---SGLRVLQRSFCSSVAEKASSSNSGQPSSESEVKQSFTNNDDQYDVAVVG 62
           +GR  V V   +G R + RSF        SSS   Q SS SE        ++ +D+ + G
Sbjct: 14  IGRQCVAVRTLNGARAVHRSF--------SSSEHDQDSSTSE--------NELFDIIISG 57

Query: 63  GGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFK 122
           GGMVG A+ACSL   P      + ++++     +    K  +    RVS+++P + +   
Sbjct: 58  GGMVGTAMACSLGLDPNLTGKKILLLEAG---HEKKMDKIPETYSTRVSSISPGSATLLS 114

Query: 123 EIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQ 182
            +GAW ++   R   ++KMQVWD        ++  ++  E +  +VEN V+ ++L   +Q
Sbjct: 115 GLGAWDHIVNMRCKPYNKMQVWDACSDALITFDKENLQDE-MAYIVENDVIVAALTKQLQ 173

Query: 183 N-TEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVV 241
             ++  K  Y +++      P    +S +S P            ++ L++G +L+ KL++
Sbjct: 174 TLSDHVKVQYRTKVVKYTW-PHPYHVS-ESIP----------WVQVALANGKTLHTKLLI 221

Query: 242 GADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK--ENYCAWQRFLPAGPIALLPIGDN 299
           GADG  S VR  AG  T  W+Y Q+A++  +  ++  EN  AWQRFLP GPIA+LP+ D 
Sbjct: 222 GADGPNSMVRREAGIPTVKWNYDQSAVVAVLHLSEPTENNVAWQRFLPTGPIAMLPLSDT 281

Query: 300 FSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATL 359
            S++VW+ + + A +   M+E+ FV  +N A  +    H + + +      S FR   ++
Sbjct: 282 ESSLVWSTSHQHAEELLQMDEESFVDAINSAF-WSNENHSELVETAG----SLFRMALSV 336

Query: 360 ---SAKECFEVPPRVVKLASE-RMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVN 415
               +    ++PP V  +  + R++FPL + HA  Y+  RV LIGDAAH VHPLAGQG N
Sbjct: 337 LMPDSGSARQLPPSVSGIGPKSRVMFPLGMGHATEYIRHRVALIGDAAHRVHPLAGQGAN 396

Query: 416 LGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGP 475
           LGFGD S L++++++    G DIG    L ++E ER+  N+ MM  +D  ++ YS +  P
Sbjct: 397 LGFGDVSYLTQVLSQAAYNGKDIGAMQHLLEFETERQRHNLPMMTAIDLMKRLYSSNTAP 456

Query: 476 LNILRAAAFHGAQYISPLKRNIISYAS 502
           + +LR         + PLK  I+++AS
Sbjct: 457 MVLLRTFGLQATNAVPPLKEQIMAFAS 483

Danio rerio (taxid: 7955)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|Q8R1S0|COQ6_MOUSE Ubiquinone biosynthesis monooxygenase COQ6 OS=Mus musculus GN=Coq6 PE=2 SV=3

 Score =  255 bits (651), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 169/486 (34%), Positives = 261/486 (53%), Gaps = 28/486 (5%)

Query: 23  FCSSVAEKASSSNSGQPSSESEVKQSFTNNDDQYDVAVVGGGMVGMALACSLASMPLTKH 82
            C      A  +  G P   S+ + + ++ D  YDV V GGG+VG A+AC+L        
Sbjct: 12  LCVRWWSSAQLAARGGPLVASQ-RWAGSSADTVYDVVVSGGGLVGSAMACALGHDIHFHD 70

Query: 83  LSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQ 142
             + ++++ P   K    K  +    RVS+++P + +     GAW ++   R   F +MQ
Sbjct: 71  KKILLLEAGP---KKALEKLSETYSNRVSSISPGSTTLLSSFGAWDHICNMRCKAFRRMQ 127

Query: 143 VWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNT-EFQKTIYPSRLTSMALL 201
           VWD        ++ RD N + +G +VEN V+  +L   ++   +  K +Y S+    +  
Sbjct: 128 VWDSCSEALIMFD-RD-NLDDMGYIVENDVIMYALTKQLEAVADRVKVLYESKAVGYSW- 184

Query: 202 PSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGW 261
           P + S++ DS+P             + L DG++L  KL++GADG KS VR+ AG +   W
Sbjct: 185 PGAFSMA-DSSP----------WVHITLGDGSTLQTKLLIGADGHKSGVRQAAGIQNVSW 233

Query: 262 SYSQNAIICTVEHNK--ENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMN 319
            Y Q+A++ T+  ++  EN  AWQRFLP+GPIALLP+ D  S++VW+ + + A++  SM+
Sbjct: 234 KYDQSAVVATLHLSEATENNVAWQRFLPSGPIALLPLSDTLSSLVWSTSHEHAAELVSMD 293

Query: 320 EDDFVKILNHALDYGYGPHPKSISSGS--VDMFSWFRGDATLSAKECFEVPPRVVKL-AS 376
           E++FV  +N A  +    H   + S S  V           +SA++   +PP + K+ A 
Sbjct: 294 EEEFVDAINSAF-WSDVHHTDFVDSASAMVRHAVALLKPTKVSARQ---LPPSIAKVDAK 349

Query: 377 ERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGA 436
            R +FPL L HA  YV  RV LIGDAAH +HPLAGQGVN+GFGD S+L   ++     G 
Sbjct: 350 SRALFPLGLGHAAEYVRPRVALIGDAAHRIHPLAGQGVNMGFGDISSLVHHLSTAAFNGK 409

Query: 437 DIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRN 496
           D+G  S L  YE +R+  N  ++A  D  ++ YS    PL +LR         +SPLK  
Sbjct: 410 DLGSMSHLTGYETDRQRHNTALLAATDLLKRLYSTSATPLVLLRTWGLQATNAVSPLKEQ 469

Query: 497 IISYAS 502
           I+++AS
Sbjct: 470 IMAFAS 475

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|Q68FU7|COQ6_RAT Ubiquinone biosynthesis monooxygenase COQ6 OS=Rattus norvegicus GN=Coq6 PE=2 SV=1

 Score =  252 bits (644), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 163/463 (35%), Positives = 251/463 (54%), Gaps = 27/463 (5%)

Query: 46  KQSFTNNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDP 105
           + + ++ D  YDV V GGGMVG A+AC+L          + ++++ P   K    K  + 
Sbjct: 34  RWTSSSTDSVYDVVVSGGGMVGSAMACALGHDIHFHDKKILLLEAGP---KKTLEKLSET 90

Query: 106 PDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILG 165
              RVS+++  + +     GAW ++   R   F +MQVWD        ++  +++   +G
Sbjct: 91  YSNRVSSISLGSTTLLSSFGAWDHICNMRCKAFRRMQVWDSCSEALIMFDKDNLDD--MG 148

Query: 166 CVVENKVLHSSLLSCMQNT-EFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL 224
            +VEN V+  ++   ++   +  K +Y S+    A  P   S++ DS+P           
Sbjct: 149 YIVENDVIMHAITKQLEAVADRVKVLYESKAVGYAW-PGPFSLA-DSSP----------W 196

Query: 225 AKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK--ENYCAW 282
             + L DG++L  KL++GADG  S VR+ AG +  GW+Y Q+A++ T+  ++  EN  AW
Sbjct: 197 VHITLGDGSTLQTKLLIGADGHNSGVRQAAGIQNVGWNYDQSAVVATLHLSEATENNVAW 256

Query: 283 QRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSI 342
           QRFLP+GPIALLP+ D  S++VW+ +   A++  SM+E++FV  +N A  +    H   +
Sbjct: 257 QRFLPSGPIALLPLSDTLSSLVWSTSHAHAAELVSMHEEEFVDAINSAF-WSDVHHTDFV 315

Query: 343 SSGS--VDMFSWFRGDATLSAKECFEVPPRVVKL-ASERMVFPLSLKHANNYVSKRVVLI 399
            S S  V           +SA++   +PP V K+ A  R +FPL L HA  YV  RV LI
Sbjct: 316 DSASAMVHHAVALLKPTKVSARQ---LPPSVAKVDAKSRALFPLGLGHAAEYVRPRVALI 372

Query: 400 GDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMM 459
           GDAAH VHPLAGQGVN+GFGD S+L   ++     G D+G  S L  YE +R+  N  ++
Sbjct: 373 GDAAHRVHPLAGQGVNMGFGDISSLIHYLSTAAFNGKDLGSMSHLTGYETDRQRHNTALL 432

Query: 460 AVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYAS 502
           A  D  ++ YS    PL +LR         +SPLK  I+++AS
Sbjct: 433 AATDLLKRLYSTSTTPLVLLRTWGLQATNAVSPLKEQIMAFAS 475

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|Q9Y2Z9|COQ6_HUMAN Ubiquinone biosynthesis monooxygenase COQ6 OS=Homo sapiens GN=COQ6 PE=1 SV=2

 Score =  250 bits (638), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 159/464 (34%), Positives = 246/464 (53%), Gaps = 29/464 (6%)

Query: 46  KQSFTNNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDP 105
           + S  + D  YDV V GGG+VG A+AC+L          + ++++ P   K    K  + 
Sbjct: 26  RWSGASTDTVYDVVVSGGGLVGAAMACALGYDIHFHDKKILLLEAGP---KKVLEKLSET 82

Query: 106 PDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILG 165
              RVS+++P + +     GAW ++   R+  F +MQVWD        ++  +++   +G
Sbjct: 83  YSNRVSSISPGSATLLSSFGAWDHICNMRYRAFRRMQVWDACSEALIMFDKDNLDD--MG 140

Query: 166 CVVENKVLHSSLLSCMQNTEFQKTI-YPS---RLTSMALLPSSSSISVDSTPSATTLFTK 221
            +VEN V+  +L   ++    + T+ Y S   R T     P +     DS+P        
Sbjct: 141 YIVENDVIMHALTKQLEAVSDRVTVLYRSKAIRYTWPCPFPMA-----DSSP-------- 187

Query: 222 GHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK--ENY 279
                + L DG++   KL++GADG  S VR+  G +   W+Y Q+A++ T+  ++  EN 
Sbjct: 188 --WVHITLGDGSTFQTKLLIGADGHNSGVRQAVGIQNVSWNYDQSAVVATLHLSEATENN 245

Query: 280 CAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHP 339
            AWQRFLP+GPIALLP+ D  S++VW+ + + A++  SM+E+ FV  +N A  +    H 
Sbjct: 246 VAWQRFLPSGPIALLPLSDTLSSLVWSTSHEHAAELVSMDEEKFVDAVNSAF-WSDADHT 304

Query: 340 KSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKL-ASERMVFPLSLKHANNYVSKRVVL 398
             I +    M  +       +     ++PP V ++ A  R++FPL L HA  YV  RV L
Sbjct: 305 DFIDTAGA-MLQYAVSLLKPTKVSARQLPPSVARVDAKSRVLFPLGLGHAAEYVRPRVAL 363

Query: 399 IGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVM 458
           IGDAAH VHPLAGQGVN+GFGD S+L+  ++     G D+G  S L  YE ER+  N  +
Sbjct: 364 IGDAAHRVHPLAGQGVNMGFGDISSLAHHLSTAAFNGKDLGSVSHLTGYETERQRHNTAL 423

Query: 459 MAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYAS 502
           +A  D  ++ YS    PL +LR         +SPLK  I+++AS
Sbjct: 424 LAATDLLKRLYSTSASPLVLLRTWGLQATNAVSPLKEQIMAFAS 467

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|Q2KIL4|COQ6_BOVIN Ubiquinone biosynthesis monooxygenase COQ6 OS=Bos taurus GN=COQ6 PE=2 SV=2

 Score =  246 bits (627), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 161/456 (35%), Positives = 248/456 (54%), Gaps = 27/456 (5%)

Query: 53  DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVST 112
           D+ YDV V GGG+VG A+AC+L          + ++++ P   K    K  +    RVS+
Sbjct: 34  DNVYDVVVSGGGLVGAAMACALGHDIHFCDKKILLLEAGP---KKVLEKLPETYSNRVSS 90

Query: 113 VTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKV 172
           ++P + +     GAW ++   R   F +MQVWD        ++  +++   +G +VEN V
Sbjct: 91  ISPGSATLLSSFGAWDHICNMRCRAFRRMQVWDACSEALIMFDKDNLDD--MGYIVENDV 148

Query: 173 LHSSLLSCMQNTEFQKTI-YPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD 231
           +  +L   ++    Q T+ Y S+  S    P   S++ DS+P             + L D
Sbjct: 149 IMHALTKQLEAVSDQVTVLYKSKAVSYTW-PYPFSMA-DSSP----------WVHITLGD 196

Query: 232 GTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK--ENYCAWQRFLPAG 289
           G +L  KL++GADG  S VR+ AG +   W+Y Q+A++ T+  ++  EN  AWQRFLP+G
Sbjct: 197 GRTLQTKLLIGADGHNSGVRQAAGIRNVSWNYDQSAVVATLHLSEATENNVAWQRFLPSG 256

Query: 290 PIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDM 349
           PIALLP+ D  S++VW+ + + A++  SM E++FV  +N A  +    H   I S    +
Sbjct: 257 PIALLPLSDTLSSLVWSTSHEHAAELVSMEEEEFVDAINSAF-WSDVNHTDFIDSAGSML 315

Query: 350 FSW--FRGDATLSAKECFEVPPRVVKL-ASERMVFPLSLKHANNYVSKRVVLIGDAAHTV 406
            S   F     +SA++   +PP V ++ A  R++FPL L HA  YV  R+ LIGDAAH V
Sbjct: 316 QSAVAFLKPTRVSARQ---LPPSVARVDAKSRVLFPLGLGHAAEYVRPRLALIGDAAHRV 372

Query: 407 HPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQ 466
           HPLAGQGVN+GFGD S+L   ++     G D+G  S L  YE +R+  N  ++A  D  +
Sbjct: 373 HPLAGQGVNMGFGDISSLLHHLSTAAFNGKDLGSMSHLTSYETDRQRHNTALLAATDLLK 432

Query: 467 KAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYAS 502
           + YS     + +LR         +SPLK  I+++AS
Sbjct: 433 RLYSTRATLVVLLRTWGLQATNAVSPLKEQIMAFAS 468

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|Q54EN1|COQ6_DICDI Ubiquinone biosynthesis monooxygenase COQ6 homolog OS=Dictyostelium discoideum GN=coq6 PE=3 SV=1

 Score =  233 bits (593), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 157/485 (32%), Positives = 248/485 (51%), Gaps = 37/485 (7%)

Query: 43  SEVKQSFTNNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKK 102
           S    S  N D+ YD+ ++GGG+VG  +ACS+ +   TKHL VA+I+S+        I  
Sbjct: 25  STTTNSTINKDNIYDIIIIGGGLVGSTMACSIGNNNTTKHLKVALIESSKIQTVEQSISN 84

Query: 103 EDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAY-FDKMQVWDYTGLGYTKYNARDV-- 159
              P+ R  +    TI  FK I  W  ++  +    F++++VWD +G     +   D+  
Sbjct: 85  A-IPEIRTISFNNQTIELFKSINVWDTIKSTKRVNPFNQVRVWDTSGFEGIHFQDNDIID 143

Query: 160 ---NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSAT 216
              N   +G ++EN ++ SSLLS ++  E           ++ L    S  S++   +  
Sbjct: 144 DGNNTTAMGYIIENNIVTSSLLSKVKQFE-----------NIELFEQLSVKSMNDY-NEE 191

Query: 217 TLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVE--- 273
           T+ T   L  + LS+   L+AKL++GADGG S +++     + G  Y+Q A++CT++   
Sbjct: 192 TIRTTSILPSVTLSNDQQLHAKLIIGADGGNSILKKQLQVPSIGRVYNQKAVVCTLKLGI 251

Query: 274 -----------HNKENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDD 322
                      +N  N   +QRFLP GPIALLP+ + ++NI+W+ N   A     ++++ 
Sbjct: 252 KQDNNNNSSNNNNNNNNTLFQRFLPTGPIALLPLANGYANIIWSTNLMHAQYLLELDDES 311

Query: 323 FVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFP 382
           F++ +  +          S    + ++F+       LS  E + +PP +  L S+R  FP
Sbjct: 312 FLEQVKDSFLKSPSTSNSSFFEIASNLFNL--NPKGLSGNEIY-LPP-IEGLVSKRASFP 367

Query: 383 LSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEAS 442
           L + H  NY   RV  IGDA+H VHP+AGQGVNLG  D  TLS II + +  G DIG+A 
Sbjct: 368 LRIDHTFNYTLPRVCFIGDASHLVHPMAGQGVNLGMADVKTLSSIIEQSVQSGYDIGDAM 427

Query: 443 LLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYAS 502
           +LK++E  RKP N+ M+  +D     ++ +   +  LR         ISPLK  II  + 
Sbjct: 428 MLKRFEEIRKPENLKMLLSIDTLFNLFTNNSIFVTGLRNFGMSLLNNISPLKNLIIGVSK 487

Query: 503 GEQRL 507
           GE  L
Sbjct: 488 GESIL 492

Dictyostelium discoideum (taxid: 44689)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|O01884|COQ6_CAEEL Probable ubiquinone biosynthesis monooxygenase coq-6 OS=Caenorhabditis elegans GN=coq-6 PE=3 SV=2

 Score =  220 bits (560), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 136/460 (29%), Positives = 236/460 (51%), Gaps = 26/460 (5%)

Query: 51  NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRV 110
           N    YD  +VGGGMVG A+ACSL +    +  SV ++D+  +   ++F K   P + RV
Sbjct: 13  NASSYYDTVIVGGGMVGNAMACSLGANKSFQSKSVLLLDAGRSPSLASF-KPGAPFNNRV 71

Query: 111 STVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVEN 170
              +P +I  FK++G W  +  HR    +++ V+D       ++      +E +  ++EN
Sbjct: 72  VATSPTSIDTFKKLGVWDQINSHRTKKVNRLFVFDSCSTSEIEFERGQ--QEEVAFIIEN 129

Query: 171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS 230
            ++  SL   +   E++             + + + +   S P+A       ++A + L 
Sbjct: 130 DLIVGSLYEKL--AEYKNVD----------VKTGAKVEDCSIPNALE-----NMATIKLE 172

Query: 231 DGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVE---HNKENYCAWQRFLP 287
           +G  +   L++GADG  S+VR  +    T ++Y+Q+ ++  V     N +N  AWQRF  
Sbjct: 173 NGDVIETSLLIGADGVNSKVRHASNLDYTTFNYNQHGLVAIVNIETANGKNETAWQRFTT 232

Query: 288 AGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHP-KSISSGS 346
            GP+ALLP+ D  S + W+ +P++A   K +  D FV  LN AL       P  + +  +
Sbjct: 233 LGPVALLPLSDTVSGLTWSTSPEEAQRLKQLPSDQFVDELNSALFSQNNQIPLVNQTIFA 292

Query: 347 VDMFSWFRGDATLSAKECFEVPPRVVKLASE-RMVFPLSLKHANNYVSKRVVLIGDAAHT 405
           ++  + FR + T   K     PP V+ +  + R  FPL   +A++Y++ R  LIGDAAH 
Sbjct: 293 LNRMNPFRTE-TFGRKAEGTTPPHVITVQDKSRASFPLGFGNAHSYITTRCALIGDAAHR 351

Query: 406 VHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGF 465
           +HPLAGQGVNLG+ D   L +++ + +  GADIG  + L++Y++  +  N+ +M  +D  
Sbjct: 352 MHPLAGQGVNLGWSDVQILDKVLGDAVREGADIGSITYLREYDSAAQKHNLPVMVSVDLL 411

Query: 466 QKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ 505
            + Y  D   +   RA   +    + P+K  +++Y S  +
Sbjct: 412 NRLYRTDAPAIVAARAFGLNAFNSLGPVKNFLMNYLSAHR 451

Caenorhabditis elegans (taxid: 6239)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|P25535|VISC_ECOLI Protein VisC OS=Escherichia coli (strain K12) GN=visC PE=3 SV=2

 Score =  214 bits (544), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 138/454 (30%), Positives = 216/454 (47%), Gaps = 64/454 (14%)

Query: 57  DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPA 116
           DVA+VGGGMVG+A+AC L        L VA+++          +    PP  RVS +  A
Sbjct: 5   DVAIVGGGMVGLAVACGLQG----SGLRVAVLEQRV----QEPLAANAPPQLRVSAINAA 56

Query: 117 TISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSS 176
           +      +G WQ +   R + +  M+VWD    G+  ++ + +    LG +VEN V+H +
Sbjct: 57  SEKLLTRLGVWQDILSRRASCYHGMEVWDKDSFGHISFDDQSMGYSHLGHIVENSVIHYA 116

Query: 177 LLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLY 236
           L +    +     + P+ L  +A   + + ++                    L DG+ L 
Sbjct: 117 LWNKAHQSSDITLLAPAELQQVAWGENETFLT--------------------LKDGSMLT 156

Query: 237 AKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK-ENYCAWQRFLPAGPIALLP 295
           A+LV+GADG  S +R  A    T W Y  +A++ T+   +  +  A Q F   G +A LP
Sbjct: 157 ARLVIGADGANSWLRNKADIPLTFWDYQHHALVATIRTEEPHDAVARQVFHGEGILAFLP 216

Query: 296 IGD-NFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFR 354
           + D +  +IVW+++P++A   +  +ED+F + LN A D   G                  
Sbjct: 217 LSDPHLCSIVWSLSPEEAQRMQQASEDEFNRALNIAFDNRLG------------------ 258

Query: 355 GDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGV 414
                           + K+ S R VFPL+ ++A  + S R+ L+GDAAHT+HPLAGQGV
Sbjct: 259 ----------------LCKVESARQVFPLTGRYARQFASHRLALVGDAAHTIHPLAGQGV 302

Query: 415 NLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFG 474
           NLGF DA+ L   +      G DIG+   L++YE  RK +  +M+A + GF+  +S    
Sbjct: 303 NLGFMDAAELIAELKRLHRQGKDIGQYIYLRRYERSRKHSAALMLAGMQGFRDLFSGTNP 362

Query: 475 PLNILRAAAFHGAQYISPLKRNIISYASGEQRLP 508
              +LR      A  +  +K  +I  A G   LP
Sbjct: 363 AKKLLRDIGLKLADTLPGVKPQLIRQAMGLNDLP 396

Not yet known.

Escherichia coli (strain K12) (taxid: 83333)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|P75728|UBIF_ECOLI 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase OS=Escherichia coli (strain K12) GN=ubiF PE=1 SV=1

 Score =  208 bits (529), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 135/452 (29%), Positives = 214/452 (47%), Gaps = 73/452 (16%)

Query: 57  DVAVVGGGMVGMALACSLASMPLTKHLSVAIID-SNPALGKSNFIKKEDPPDPRVSTVTP 115
           ++A+VGGGMVG ALA  LA        +V +I+ + PA     F+  +  PD R+S ++ 
Sbjct: 7   EIAIVGGGMVGGALALGLAQ----HGFAVTVIEHAEPA----PFVA-DSQPDVRISAISA 57

Query: 116 ATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHS 175
           A++S  K +G W  VQ  R   + +++ W++    +  ++A ++   +LG +VEN VL  
Sbjct: 58  ASVSLLKGLGVWDAVQAMRCHPYRRLETWEWE-TAHVVFDAAELKLPLLGYMVENTVLQQ 116

Query: 176 SLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSL 235
           +L   ++                    +   +++    S   L     L +L+L  G  +
Sbjct: 117 ALWQALE--------------------AHPKVTLRVPGSLIALHRHDDLQELELKGGEVI 156

Query: 236 YAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVE-HNKENYCAWQRFLPAGPIALL 294
            AKLV+GADG  S+VR++AG     W Y+Q+ ++ +V+  N      WQ+F P GP A L
Sbjct: 157 RAKLVIGADGANSQVRQMAGIGVHAWQYAQSCMLISVQCENDPGDSTWQQFTPDGPRAFL 216

Query: 295 PIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFR 354
           P+ DN++++VW  +P      ++MN                                   
Sbjct: 217 PLFDNWASLVWYDSPARIRQLQNMNM---------------------------------- 242

Query: 355 GDATLSAKECFEVPPR---VVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAG 411
             A L A+     P R   V  LA+    FPL+ +HA  YV   + L+GDAAHT+HPLAG
Sbjct: 243 --AQLQAEIAKHFPSRLGYVTPLAAG--AFPLTRRHALQYVQPGLALVGDAAHTIHPLAG 298

Query: 412 QGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSV 471
           QGVNLG+ D   L  ++    + G       +LK+Y+  R   N +M + +D F   +S 
Sbjct: 299 QGVNLGYRDVDALIDVLVNARSYGEAWASYPVLKRYQMRRMADNFIMQSGMDLFYAGFSN 358

Query: 472 DFGPLNILRAAAFHGAQYISPLKRNIISYASG 503
           +  PL  +R      A+    LKR  + YA G
Sbjct: 359 NLPPLRFMRNLGLMAAERAGVLKRQALKYALG 390

Oxygenase that introduces the hydroxyl group at carbon five of 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol.

Escherichia coli (strain K12) (taxid: 83333)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	515
255554178	515	monoxygenase, putative [Ricinus communis	0.988	0.988	0.748	0.0
359494703	525	PREDICTED: ubiquinone biosynthesis monoo	0.945	0.927	0.737	0.0
449524910	510	PREDICTED: ubiquinone biosynthesis monoo	0.986	0.996	0.736	0.0
449457604	510	PREDICTED: ubiquinone biosynthesis monoo	0.986	0.996	0.734	0.0
79416711	505	ubiquinone biosynthesis monooxygenase Co	0.976	0.996	0.703	0.0
297831190	505	monooxygenase [Arabidopsis lyrata subsp.	0.976	0.996	0.695	0.0
51968852	505	monooxygenase, putatve [Arabidopsis thal	0.976	0.996	0.701	0.0
79313357	507	ubiquinone biosynthesis monooxygenase Co	0.974	0.990	0.700	0.0
224057583	447	predicted protein [Populus trichocarpa]	0.864	0.995	0.817	0.0
357450969	509	Ubiquinone biosynthesis monooxygenase CO	0.984	0.996	0.687	0.0

>gi|255554178|ref|XP_002518129.1| monoxygenase, putative [Ricinus communis] gi|223542725|gb|EEF44262.1| monoxygenase, putative [Ricinus communis]

 Score =  799 bits (2063), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/513 (74%), Positives = 432/513 (84%), Gaps = 4/513 (0%)

Query: 1   MNRIIVGRLSV----NVSGLRVLQRSFCSSVAEKASSSNSGQPSSESEVKQSFTNNDDQY 56
           MNR+I  + S     N    +V  R+FCS  A   + S+    ++E + KQS T+    Y
Sbjct: 1   MNRVIARKASAAAKDNAFKSKVPLRNFCSGAAAVNTPSSHNNNNNEDKDKQSSTHTVQPY 60

Query: 57  DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPA 116
           D+A+VGGGMVGMA  CSLA+ PLTKHL+VAIIDSNPALG    I +ED PDPRVSTVTPA
Sbjct: 61  DIAIVGGGMVGMAFTCSLATTPLTKHLNVAIIDSNPALGSKFSINREDSPDPRVSTVTPA 120

Query: 117 TISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSS 176
           TISFFK+IGAWQYVQQHRHAYFDKMQVWDYTGLGYTKY+ARD NK+ LGCVVENKVLHSS
Sbjct: 121 TISFFKDIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYSARDANKDNLGCVVENKVLHSS 180

Query: 177 LLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLY 236
           LLS +++T+FQKTIYPSRLT+M+L  SSSS  VDST SA  L+ KG LAKL+LS G+SLY
Sbjct: 181 LLSRVEDTDFQKTIYPSRLTTMSLHQSSSSTEVDSTSSAEALYIKGRLAKLELSAGSSLY 240

Query: 237 AKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPI 296
           AKLVVGADGGKS+VRELAGFKTTGW+YSQNA+ICTVEH+ EN CAWQRFLP+GPIALLPI
Sbjct: 241 AKLVVGADGGKSQVRELAGFKTTGWNYSQNAVICTVEHSVENRCAWQRFLPSGPIALLPI 300

Query: 297 GDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGD 356
           GD FSNIVWTMNPK++SDCKSMNEDDFVK +NHALD+GYGPHPKS      +MF+W  G+
Sbjct: 301 GDKFSNIVWTMNPKESSDCKSMNEDDFVKAVNHALDHGYGPHPKSSLFDGANMFTWLSGN 360

Query: 357 ATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNL 416
           + +SA E FEVPP+VVKLAS R+ FPLSL HA NY SKR+ LIGDAAHTVHPLAGQGVNL
Sbjct: 361 SVVSANESFEVPPKVVKLASARLAFPLSLMHAKNYTSKRIALIGDAAHTVHPLAGQGVNL 420

Query: 417 GFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPL 476
           GFGDA  LSRIIAEGIAVG DIGE SLLKKYEAERKPAN+ MMA+LDGFQKAYSVD GPL
Sbjct: 421 GFGDAFALSRIIAEGIAVGTDIGEVSLLKKYEAERKPANVTMMAILDGFQKAYSVDLGPL 480

Query: 477 NILRAAAFHGAQYISPLKRNIISYASGEQRLPL 509
           NILRAAAFHGA +ISPLKR+IISYASGEQRLPL
Sbjct: 481 NILRAAAFHGAHHISPLKRSIISYASGEQRLPL 513

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494703|ref|XP_002269379.2| PREDICTED: ubiquinone biosynthesis monooxygenase COQ6-like [Vitis vinifera]

 Score =  776 bits (2003), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/503 (73%), Positives = 417/503 (82%), Gaps = 16/503 (3%)

Query: 3   RIIVGRLSVNVSGLRVLQRSFCSSVAEKASSSNSGQPSSESEVKQSFTNNDDQYDVAVVG 62
           R +  ++   V GL+V +R+FC+++A +    N G P           NN   YD+A+VG
Sbjct: 37  RAVAAKIPAEVCGLKVPRRTFCNNIAAREHEENQGLP-----------NNVVHYDIAIVG 85

Query: 63  GGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFK 122
           GGMVGMALACSLASMPLTK L+VAIIDSNPAL     IKKEDPPDPRVSTVTPATIS FK
Sbjct: 86  GGMVGMALACSLASMPLTKQLNVAIIDSNPALEGKTCIKKEDPPDPRVSTVTPATISLFK 145

Query: 123 EIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQ 182
           ++GAWQYVQQHRHAYFDKMQVWDYTGLGYT+YNARDV+KE+LGCVVENKVLHSSLLSC+Q
Sbjct: 146 DVGAWQYVQQHRHAYFDKMQVWDYTGLGYTRYNARDVDKEVLGCVVENKVLHSSLLSCIQ 205

Query: 183 NTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVG 242
           NT+ +K IYPSRL SM L  +     +DST S+        LAKL+LSDG SLYAKLVVG
Sbjct: 206 NTDLKKRIYPSRLNSMTLHQNHLPTMMDSTSSS----LHASLAKLELSDGNSLYAKLVVG 261

Query: 243 ADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNFSN 302
           ADG KSRVREL GFKTTGW YSQNA+ICTVEH  EN CAWQRFLP+GPIALLP+GD FSN
Sbjct: 262 ADGAKSRVRELTGFKTTGWYYSQNAVICTVEHKTENQCAWQRFLPSGPIALLPVGDKFSN 321

Query: 303 IVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKS-ISSGSVDMFSWFRGDATLSA 361
           IVWTMNPK++S C+ MNE+DFVK LNHAL+YGYGPHP+S +   + D+FSWFR D T+SA
Sbjct: 322 IVWTMNPKESSACREMNENDFVKALNHALNYGYGPHPQSNLLGNNGDIFSWFRRDLTVSA 381

Query: 362 KECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDA 421
            ECFEVPP VVKL S RMVFPLSL+HANNY SKRVVLIGDAAHTVHPLAGQGVNLGFGDA
Sbjct: 382 NECFEVPPDVVKLVSGRMVFPLSLRHANNYASKRVVLIGDAAHTVHPLAGQGVNLGFGDA 441

Query: 422 STLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRA 481
             LSRII+EGIAVG DIGE  LLKK+EAERK  NI+MMA+LDGFQKAYSVDFGPLN+LRA
Sbjct: 442 FALSRIISEGIAVGTDIGEVHLLKKFEAERKRENIMMMAILDGFQKAYSVDFGPLNVLRA 501

Query: 482 AAFHGAQYISPLKRNIISYASGE 504
           AAFHGAQYISPLKR+IISYASG+
Sbjct: 502 AAFHGAQYISPLKRSIISYASGQ 524

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449524910|ref|XP_004169464.1| PREDICTED: ubiquinone biosynthesis monooxygenase COQ6-like [Cucumis sativus]

 Score =  771 bits (1992), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/509 (73%), Positives = 424/509 (83%), Gaps = 1/509 (0%)

Query: 1   MNRIIVGRLSVNVSGLRVLQRSFCSSVAEKASSSNSGQPSSESEVKQSFTNNDDQYDVAV 60
           MNR+I   L++NV G++   ++FCS  A K S SN      + E K    +N  Q+D+A+
Sbjct: 1   MNRLIRRNLTINVFGMKTRWKNFCSDSAAKVSGSNGNHSYVQGE-KPGSVDNFPQHDIAI 59

Query: 61  VGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISF 120
           VGGGMVGMALACSLASMPLTK LS+AIIDSNPAL     IKK  PPDPRVSTVTPATISF
Sbjct: 60  VGGGMVGMALACSLASMPLTKQLSIAIIDSNPALKGGASIKKGSPPDPRVSTVTPATISF 119

Query: 121 FKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSC 180
           F++I AW+YV++ RHAYFDKMQVWDYTGLGYTKY+ARDVNKE LGCVVENKVL SSLLS 
Sbjct: 120 FRDIDAWKYVEEQRHAYFDKMQVWDYTGLGYTKYHARDVNKEFLGCVVENKVLQSSLLSR 179

Query: 181 MQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLV 240
           +Q T+ Q TIY SRLTSM L PS S     +  S TTL   GHLAKLDLSDG+SLYAKLV
Sbjct: 180 VQCTDAQTTIYSSRLTSMDLHPSGSPTVAANISSKTTLNDPGHLAKLDLSDGSSLYAKLV 239

Query: 241 VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNF 300
           VGADG KSRVRELAGFKTTGW+YSQNA+ICTVEH +EN CAWQRFLP+GPIALLPIGDN+
Sbjct: 240 VGADGSKSRVRELAGFKTTGWNYSQNAVICTVEHTQENRCAWQRFLPSGPIALLPIGDNY 299

Query: 301 SNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLS 360
           SNIVWTMNP++A+D KSM++DDFVK +N ALD  YGP P S   GS + FSW + D TLS
Sbjct: 300 SNIVWTMNPQEATDRKSMDQDDFVKDVNSALDSSYGPPPNSSIFGSQNFFSWLKPDVTLS 359

Query: 361 AKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGD 420
             E FEVPP+VVKLASERMVFPLSL HA NY SKRVVLIGDAAHTVHPLAGQGVNLGFGD
Sbjct: 360 VDEGFEVPPKVVKLASERMVFPLSLNHAKNYASKRVVLIGDAAHTVHPLAGQGVNLGFGD 419

Query: 421 ASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILR 480
           A +LS++IAEG+A+G+DIGE +L+KKYEAERKPANI MMA+LDGFQKAYSVDFGPLNILR
Sbjct: 420 AHSLSKVIAEGVALGSDIGEVTLMKKYEAERKPANIAMMAILDGFQKAYSVDFGPLNILR 479

Query: 481 AAAFHGAQYISPLKRNIISYASGEQRLPL 509
           AAAFHGA YISPLK++IISYASG+QRLPL
Sbjct: 480 AAAFHGANYISPLKKSIISYASGDQRLPL 508

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457604|ref|XP_004146538.1| PREDICTED: ubiquinone biosynthesis monooxygenase COQ6-like [Cucumis sativus]

 Score =  770 bits (1989), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/509 (73%), Positives = 424/509 (83%), Gaps = 1/509 (0%)

Query: 1   MNRIIVGRLSVNVSGLRVLQRSFCSSVAEKASSSNSGQPSSESEVKQSFTNNDDQYDVAV 60
           MNR+I   L++NV G++   ++FCS  A K S SN      + E K    +N  Q+D+A+
Sbjct: 1   MNRLIRRNLTINVFGMKTRWKNFCSDSAAKVSGSNGNHSYVQGE-KPGSVDNFPQHDIAI 59

Query: 61  VGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISF 120
           VGGGMVGMALACSLASMPLTK L++AIIDSNPAL     IKK  PPDPRVSTVTPATISF
Sbjct: 60  VGGGMVGMALACSLASMPLTKQLTIAIIDSNPALKGGASIKKGSPPDPRVSTVTPATISF 119

Query: 121 FKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSC 180
           F++I AW+YV++ RHAYFDKMQVWDYTGLGYTKY+ARDVNKE LGCVVENKVL SSLLS 
Sbjct: 120 FRDIDAWKYVEEQRHAYFDKMQVWDYTGLGYTKYHARDVNKEFLGCVVENKVLQSSLLSR 179

Query: 181 MQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLV 240
           +Q T+ Q TIY SRLTSM L PS S     +  S TTL   GHLAKLDLSDG+SLYAKLV
Sbjct: 180 VQCTDAQTTIYSSRLTSMDLHPSGSPTVAANISSKTTLNDPGHLAKLDLSDGSSLYAKLV 239

Query: 241 VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNF 300
           VGADG KSRVRELAGFKTTGW+YSQNA+ICTVEH +EN CAWQRFLP+GPIALLPIGDN+
Sbjct: 240 VGADGSKSRVRELAGFKTTGWNYSQNAVICTVEHTQENRCAWQRFLPSGPIALLPIGDNY 299

Query: 301 SNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLS 360
           SNIVWTMNP++A+D KSM++DDFVK +N ALD  YGP P S   GS + FSW + D TLS
Sbjct: 300 SNIVWTMNPQEATDRKSMDQDDFVKDVNSALDSSYGPPPNSSIFGSQNFFSWLKPDVTLS 359

Query: 361 AKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGD 420
             E FEVPP+VVKLASERMVFPLSL HA NY SKRVVLIGDAAHTVHPLAGQGVNLGFGD
Sbjct: 360 VDEGFEVPPKVVKLASERMVFPLSLNHAKNYASKRVVLIGDAAHTVHPLAGQGVNLGFGD 419

Query: 421 ASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILR 480
           A +LS++IAEG+A+G+DIGE +L+KKYEAERKPANI MMA+LDGFQKAYSVDFGPLNILR
Sbjct: 420 AHSLSKVIAEGVALGSDIGEVTLMKKYEAERKPANIAMMAILDGFQKAYSVDFGPLNILR 479

Query: 481 AAAFHGAQYISPLKRNIISYASGEQRLPL 509
           AAAFHGA YISPLK++IISYASG+QRLPL
Sbjct: 480 AAAFHGANYISPLKKSIISYASGDQRLPL 508

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79416711|ref|NP_189062.3| ubiquinone biosynthesis monooxygenase Coq6 [Arabidopsis thaliana] gi|332643350|gb|AEE76871.1| ubiquinone biosynthesis monooxygenase Coq6 [Arabidopsis thaliana]

 Score =  750 bits (1937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/509 (70%), Positives = 420/509 (82%), Gaps = 6/509 (1%)

Query: 1   MNRIIVGRLSVNVSGLRVLQRSFCSSVAEKASSSNSGQPSSESEVKQSFTNNDDQYDVAV 60
           MNR++   L  +V G R+LQR+ CS+V     S++    S+ES    + T++  Q+D+A+
Sbjct: 1   MNRVLARNLRTSVCGTRILQRT-CSTVVTHDVSTSC---SNESNALNNSTDDGPQHDIAI 56

Query: 61  VGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISF 120
           VGGGMVG+ALA SLAS PLTKHL+VAIID+NP LG+ N I+K   PDPRVSTVTPATISF
Sbjct: 57  VGGGMVGIALAASLASKPLTKHLNVAIIDNNPLLGRRNIIEKGHQPDPRVSTVTPATISF 116

Query: 121 FKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSC 180
            K+IGAW+Y++Q RHAYFDKMQVWDYTGLGYT+YNA DV++++LGCVVENKVL SS LSC
Sbjct: 117 LKDIGAWKYIEQQRHAYFDKMQVWDYTGLGYTRYNANDVHQDVLGCVVENKVLQSSQLSC 176

Query: 181 MQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLV 240
           +Q ++ QKT+YP+RL +M +LPSSS   +   PS T LF +G LAKL+LSDG  +YAKLV
Sbjct: 177 VQESDLQKTVYPARLNAMDMLPSSSLTGLGEVPSTTDLFMRGRLAKLELSDGNRVYAKLV 236

Query: 241 VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNF 300
           VGADG KSRVRELAG KTTGW+YSQNAIICTVEH  ENY AWQRFLP GPIALLPIGD F
Sbjct: 237 VGADGSKSRVRELAGIKTTGWNYSQNAIICTVEHTAENYTAWQRFLPNGPIALLPIGDKF 296

Query: 301 SNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLS 360
           SNIVWTM+PK+ASD K MNEDDF+K +N ALD GYGP+P++ SS   D  SW  GDAT+S
Sbjct: 297 SNIVWTMDPKEASDRKLMNEDDFIKAVNDALDSGYGPNPETTSSR--DSLSWLTGDATIS 354

Query: 361 AKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGD 420
           AKE FE PP+VVKL+SERM+FPLSL+HA +YVSKRV L+GD+AHTVHPLAGQGVNLGF D
Sbjct: 355 AKERFETPPKVVKLSSERMMFPLSLRHAKDYVSKRVALVGDSAHTVHPLAGQGVNLGFAD 414

Query: 421 ASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILR 480
           A  LS+ IAEGIA+G DIGEA+LLK+YEAERKPANI MMAVLDG QK YS+DFGPLN LR
Sbjct: 415 ACALSKAIAEGIALGTDIGEANLLKRYEAERKPANIAMMAVLDGIQKMYSLDFGPLNALR 474

Query: 481 AAAFHGAQYISPLKRNIISYASGEQRLPL 509
           AAAFHGA YISPLK+ IISYASGEQ LPL
Sbjct: 475 AAAFHGAHYISPLKKRIISYASGEQSLPL 503

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831190|ref|XP_002883477.1| monooxygenase [Arabidopsis lyrata subsp. lyrata] gi|297329317|gb|EFH59736.1| monooxygenase [Arabidopsis lyrata subsp. lyrata]

 Score =  747 bits (1928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/509 (69%), Positives = 423/509 (83%), Gaps = 6/509 (1%)

Query: 1   MNRIIVGRLSVNVSGLRVLQRSFCSSVAEKASSSNSGQPSSESEVKQSFTNNDDQYDVAV 60
           MNR++   LS NV G RVL+R+  + V  + SSS S    +ES   ++ T++  Q+D+A+
Sbjct: 1   MNRVLARNLSKNVCGTRVLRRTCSTVVTHEVSSSGS----NESNAIRNSTDDGPQHDIAI 56

Query: 61  VGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISF 120
           VGGGMVG+ALA SLAS PLTKHL+VAIID+NP LG+ N I+K  PPDPRVSTVTPAT+SF
Sbjct: 57  VGGGMVGIALAASLASKPLTKHLNVAIIDNNPLLGRKNIIEKGHPPDPRVSTVTPATLSF 116

Query: 121 FKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSC 180
            K+IGAW+Y+++ RHAYFDKMQVWDYTGLGYT+YNA DV++++LGCVVENKVL SS LSC
Sbjct: 117 LKDIGAWKYIEEQRHAYFDKMQVWDYTGLGYTRYNANDVHQDVLGCVVENKVLQSSQLSC 176

Query: 181 MQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLV 240
           +Q ++ QKT+YP+RL +M +LPSSS   +   PS+T LF +G LAKL+LSDG  +YAKLV
Sbjct: 177 VQESDLQKTVYPARLNAMDMLPSSSLTGLGEVPSSTDLFMRGRLAKLELSDGNHVYAKLV 236

Query: 241 VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNF 300
           VGADG KSRVRELAG KTTGW+YSQNAIICTVEH  ENY AWQRFLP GPIALLPIGD F
Sbjct: 237 VGADGSKSRVRELAGIKTTGWNYSQNAIICTVEHTVENYTAWQRFLPNGPIALLPIGDKF 296

Query: 301 SNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLS 360
           SNIVWTM+PK+ASD K MNEDDF+K +N ALD GYGP+P++ SS   D  SW  GD+T+S
Sbjct: 297 SNIVWTMDPKEASDRKLMNEDDFIKAVNDALDSGYGPNPETTSSP--DSLSWLTGDSTIS 354

Query: 361 AKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGD 420
           AKE FE PP+VVKL+SERM+FPLSL+HA +YVSKRV L+GD+AHTVHPLAGQGVNLGF D
Sbjct: 355 AKERFETPPKVVKLSSERMMFPLSLRHAKDYVSKRVALVGDSAHTVHPLAGQGVNLGFAD 414

Query: 421 ASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILR 480
           A  LS+ I+EGIA+G DIGE++LLK+YEA+RKPANI MMAVLDG QK YSV+FGPLN LR
Sbjct: 415 ACALSKAISEGIALGTDIGESNLLKRYEADRKPANIAMMAVLDGIQKMYSVNFGPLNALR 474

Query: 481 AAAFHGAQYISPLKRNIISYASGEQRLPL 509
           AAAFHGA YISPLK+ IISYASG+Q LPL
Sbjct: 475 AAAFHGAHYISPLKKRIISYASGDQSLPL 503

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51968852|dbj|BAD43118.1| monooxygenase, putatve [Arabidopsis thaliana]

 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/509 (70%), Positives = 419/509 (82%), Gaps = 6/509 (1%)

Query: 1   MNRIIVGRLSVNVSGLRVLQRSFCSSVAEKASSSNSGQPSSESEVKQSFTNNDDQYDVAV 60
           MNR++   L  +V G R+LQR+ CS+V     S++    S+ES    + T++  Q+D+A+
Sbjct: 1   MNRVLARNLRTSVCGTRILQRT-CSTVVTHDVSTSC---SNESNALNNSTDDGPQHDIAI 56

Query: 61  VGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISF 120
           VGGGMVG+ALA SLAS PLTKHL+VAIID+NP LG+ N I+K   PDPRVSTVTPATISF
Sbjct: 57  VGGGMVGIALAASLASKPLTKHLNVAIIDNNPLLGRRNIIEKGHQPDPRVSTVTPATISF 116

Query: 121 FKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSC 180
            K+IGAW+Y++Q RHAYFDKMQVWDYTGLGYT+YNA DV++++LGCVVENKVL SS LSC
Sbjct: 117 LKDIGAWKYIEQQRHAYFDKMQVWDYTGLGYTRYNANDVHQDVLGCVVENKVLQSSQLSC 176

Query: 181 MQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLV 240
           +Q ++ QKT+YP+RL +M +LPSSS   +   PS T LF +G LAKL+LSDG  +YAKLV
Sbjct: 177 VQESDLQKTVYPARLNAMDMLPSSSLTGLGEVPSTTGLFMRGRLAKLELSDGNRVYAKLV 236

Query: 241 VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNF 300
           VGADG KSRVRELAG KTTGW+YSQNAIICTVE   ENY AWQRFLP GPIALLPIGD F
Sbjct: 237 VGADGSKSRVRELAGIKTTGWNYSQNAIICTVEDTAENYTAWQRFLPNGPIALLPIGDKF 296

Query: 301 SNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLS 360
           SNIVWTM+PK+ASD K MNEDDF+K +N ALD GYGP+P++ SS   D  SW  GDAT+S
Sbjct: 297 SNIVWTMDPKEASDRKLMNEDDFIKAVNDALDSGYGPNPETTSSR--DSLSWLTGDATIS 354

Query: 361 AKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGD 420
           AKE FE PP+VVKL+SERM+FPLSL+HA +YVSKRV L+GD+AHTVHPLAGQGVNLGF D
Sbjct: 355 AKERFETPPKVVKLSSERMMFPLSLRHAKDYVSKRVALVGDSAHTVHPLAGQGVNLGFAD 414

Query: 421 ASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILR 480
           A  LS+ IAEGIA+G DIGEA+LLK+YEAERKPANI MMAVLDG QK YS+DFGPLN LR
Sbjct: 415 ACALSKAIAEGIALGTDIGEANLLKRYEAERKPANIAMMAVLDGIQKMYSLDFGPLNALR 474

Query: 481 AAAFHGAQYISPLKRNIISYASGEQRLPL 509
           AAAFHGA YISPLK+ IISYASGEQ LPL
Sbjct: 475 AAAFHGAHYISPLKKRIISYASGEQSLPL 503

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79313357|ref|NP_001030758.1| ubiquinone biosynthesis monooxygenase Coq6 [Arabidopsis thaliana] gi|332643351|gb|AEE76872.1| ubiquinone biosynthesis monooxygenase Coq6 [Arabidopsis thaliana]

 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/508 (70%), Positives = 419/508 (82%), Gaps = 6/508 (1%)

Query: 2   NRIIVGRLSVNVSGLRVLQRSFCSSVAEKASSSNSGQPSSESEVKQSFTNNDDQYDVAVV 61
           +R++   L  +V G R+LQR+ CS+V     S++    S+ES    + T++  Q+D+A+V
Sbjct: 4   DRVLARNLRTSVCGTRILQRT-CSTVVTHDVSTSC---SNESNALNNSTDDGPQHDIAIV 59

Query: 62  GGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFF 121
           GGGMVG+ALA SLAS PLTKHL+VAIID+NP LG+ N I+K   PDPRVSTVTPATISF 
Sbjct: 60  GGGMVGIALAASLASKPLTKHLNVAIIDNNPLLGRRNIIEKGHQPDPRVSTVTPATISFL 119

Query: 122 KEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCM 181
           K+IGAW+Y++Q RHAYFDKMQVWDYTGLGYT+YNA DV++++LGCVVENKVL SS LSC+
Sbjct: 120 KDIGAWKYIEQQRHAYFDKMQVWDYTGLGYTRYNANDVHQDVLGCVVENKVLQSSQLSCV 179

Query: 182 QNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVV 241
           Q ++ QKT+YP+RL +M +LPSSS   +   PS T LF +G LAKL+LSDG  +YAKLVV
Sbjct: 180 QESDLQKTVYPARLNAMDMLPSSSLTGLGEVPSTTDLFMRGRLAKLELSDGNRVYAKLVV 239

Query: 242 GADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNFS 301
           GADG KSRVRELAG KTTGW+YSQNAIICTVEH  ENY AWQRFLP GPIALLPIGD FS
Sbjct: 240 GADGSKSRVRELAGIKTTGWNYSQNAIICTVEHTAENYTAWQRFLPNGPIALLPIGDKFS 299

Query: 302 NIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSA 361
           NIVWTM+PK+ASD K MNEDDF+K +N ALD GYGP+P++ SS   D  SW  GDAT+SA
Sbjct: 300 NIVWTMDPKEASDRKLMNEDDFIKAVNDALDSGYGPNPETTSSR--DSLSWLTGDATISA 357

Query: 362 KECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDA 421
           KE FE PP+VVKL+SERM+FPLSL+HA +YVSKRV L+GD+AHTVHPLAGQGVNLGF DA
Sbjct: 358 KERFETPPKVVKLSSERMMFPLSLRHAKDYVSKRVALVGDSAHTVHPLAGQGVNLGFADA 417

Query: 422 STLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRA 481
             LS+ IAEGIA+G DIGEA+LLK+YEAERKPANI MMAVLDG QK YS+DFGPLN LRA
Sbjct: 418 CALSKAIAEGIALGTDIGEANLLKRYEAERKPANIAMMAVLDGIQKMYSLDFGPLNALRA 477

Query: 482 AAFHGAQYISPLKRNIISYASGEQRLPL 509
           AAFHGA YISPLK+ IISYASGEQ LPL
Sbjct: 478 AAFHGAHYISPLKKRIISYASGEQSLPL 505

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057583|ref|XP_002299279.1| predicted protein [Populus trichocarpa] gi|222846537|gb|EEE84084.1| predicted protein [Populus trichocarpa]

 Score =  746 bits (1925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/445 (81%), Positives = 395/445 (88%)

Query: 65  MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEI 124
           MVGMALACSLA+ PLTKHLSVAIIDS+PAL     IK+EDPPDPRVSTVTPATISFFK+ 
Sbjct: 1   MVGMALACSLATTPLTKHLSVAIIDSSPALANKPCIKREDPPDPRVSTVTPATISFFKDT 60

Query: 125 GAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNT 184
           GAWQYVQQHRHAYFDKMQVWDYTGLGYTKY+ARDV+KE+LGCVVENKVLHSSLLS +++T
Sbjct: 61  GAWQYVQQHRHAYFDKMQVWDYTGLGYTKYDARDVDKEVLGCVVENKVLHSSLLSRIEDT 120

Query: 185 EFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGAD 244
           +FQK IY SRLTSM+L PSSSSI VDST S    + +G LAKL+LSDG SLYAKLVVG+D
Sbjct: 121 DFQKKIYHSRLTSMSLNPSSSSIVVDSTASTEASYARGRLAKLELSDGNSLYAKLVVGSD 180

Query: 245 GGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNFSNIV 304
           GGKS+VRELAGFKTTGW YSQNA+ICTVEH+ ENY AWQRFLPAGPIALLPIGD FSNIV
Sbjct: 181 GGKSQVRELAGFKTTGWKYSQNAVICTVEHSVENYSAWQRFLPAGPIALLPIGDKFSNIV 240

Query: 305 WTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKEC 364
           WTMNP+++SD KSM EDDFVK +NHALDYGYGPH KS   GS  MFSW  G+ T+ A E 
Sbjct: 241 WTMNPEESSDFKSMKEDDFVKAVNHALDYGYGPHHKSSLPGSAGMFSWLGGNVTIFANES 300

Query: 365 FEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTL 424
           FE+PP+VVKLASERM FPLSL HAN Y SKRVVLIGDAAHTVHPLAGQGVNLGFGDA  L
Sbjct: 301 FEIPPKVVKLASERMAFPLSLMHANEYASKRVVLIGDAAHTVHPLAGQGVNLGFGDAFAL 360

Query: 425 SRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAF 484
           SRIIAEGIAVG DIGE SLLKKYEAERK AN+ MMA+LDGFQKAYSVDFGPLNILRAAAF
Sbjct: 361 SRIIAEGIAVGMDIGEVSLLKKYEAERKLANMTMMAILDGFQKAYSVDFGPLNILRAAAF 420

Query: 485 HGAQYISPLKRNIISYASGEQRLPL 509
           HGA +ISPLKR+IISYASGEQRLPL
Sbjct: 421 HGAHFISPLKRSIISYASGEQRLPL 445

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357450969|ref|XP_003595761.1| Ubiquinone biosynthesis monooxygenase COQ6 [Medicago truncatula] gi|355484809|gb|AES66012.1| Ubiquinone biosynthesis monooxygenase COQ6 [Medicago truncatula]

 Score =  740 bits (1911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/509 (68%), Positives = 423/509 (83%), Gaps = 2/509 (0%)

Query: 1   MNRIIVGRLSVNVSGLRVLQRSFCSSVAEKASSSNSGQPSSESEVKQSFTNNDDQYDVAV 60
           MNR+I   +S NV  L++ ++ FCS  A K  +S +  PS+E E K   +    +YDVA+
Sbjct: 1   MNRVIKKTVS-NVFALKIPRKCFCSQ-AVKVDASTNLLPSNEHEKKPIISQIIPEYDVAI 58

Query: 61  VGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISF 120
           VGGGMVGMALAC LA MP+TK LSVAIIDSNPAL     IKKEDPPDPRVSTVTPA+ISF
Sbjct: 59  VGGGMVGMALACFLACMPMTKQLSVAIIDSNPALSSGLCIKKEDPPDPRVSTVTPASISF 118

Query: 121 FKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSC 180
            +E GAW+YV+Q+RHAYF KMQVWDYTG GY +Y+A DVNK+ LGCV ENKVLHSSLLSC
Sbjct: 119 LQEAGAWKYVEQNRHAYFKKMQVWDYTGFGYARYDAGDVNKDFLGCVAENKVLHSSLLSC 178

Query: 181 MQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLV 240
           +++++F+ T YPSRLTSM L  +S S+  ++TPS      +GH +KL+LSDG+S+YAKLV
Sbjct: 179 IKDSDFKTTFYPSRLTSMTLNTNSMSVVEENTPSKEPSPAQGHASKLELSDGSSIYAKLV 238

Query: 241 VGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNF 300
           VGADGGKSRVRELAGFKTTGW+YSQNAIICTVEH   N+CAWQRFLP GPIALLP+G+NF
Sbjct: 239 VGADGGKSRVRELAGFKTTGWNYSQNAIICTVEHTSANHCAWQRFLPNGPIALLPMGENF 298

Query: 301 SNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLS 360
           SNIVWTM+P +++D KS+ E+ F+K +N ALDYGYGPHP S S G+ D+FSW + D TLS
Sbjct: 299 SNIVWTMSPTESNDRKSITEEMFLKDVNSALDYGYGPHPTSSSLGARDIFSWLKMDGTLS 358

Query: 361 AKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGD 420
           A E FE+PP+ ++LASERMVFPLSL+HAN+Y +KRVVLIGDAAHT+HPLAGQGVNLGFGD
Sbjct: 359 ANEPFEIPPKAIRLASERMVFPLSLRHANSYATKRVVLIGDAAHTIHPLAGQGVNLGFGD 418

Query: 421 ASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILR 480
           A +LSR+IAEGIA+G+DIGE +LLKKYE ERKPAN+ MMA+LDGFQKAYS+DFGP N LR
Sbjct: 419 AYSLSRVIAEGIALGSDIGEVNLLKKYEQERKPANVTMMAILDGFQKAYSIDFGPFNFLR 478

Query: 481 AAAFHGAQYISPLKRNIISYASGEQRLPL 509
            AAF GA ++SPLKR+IISYASGE++LP+
Sbjct: 479 GAAFRGANFVSPLKRSIISYASGERKLPI 507

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	515
TAIR|locus:2093731	507	AT3G24200 "AT3G24200" [Arabido	0.974	0.990	0.649	5.3e-175
UNIPROTKB|F1PBF7	469	COQ6 "Uncharacterized protein"	0.833	0.914	0.333	4.3e-61
MGI|MGI:1924408	476	Coq6 "coenzyme Q6 homolog (yea	0.833	0.901	0.333	2.4e-60
UNIPROTKB|Q9Y2Z9	468	COQ6 "Ubiquinone biosynthesis	0.842	0.927	0.327	6.4e-60
RGD|1311149	476	Coq6 "coenzyme Q6 homolog, mon	0.838	0.907	0.328	6.4e-60
UNIPROTKB|F1S3H4	476	COQ6 "Uncharacterized protein"	0.836	0.905	0.323	1.7e-59
UNIPROTKB|Q2KIL4	469	COQ6 "Ubiquinone biosynthesis	0.833	0.914	0.331	9.3e-59
ZFIN|ZDB-GENE-060825-297	484	coq6 "coenzyme Q6 homolog, mon	0.852	0.907	0.297	4.6e-57
DICTYBASE|DDB_G0291440	495	coq6 "monooxygenase" [Dictyost	0.856	0.890	0.315	1.9e-53
UNIPROTKB|F1NBR7	470	COQ6 "Uncharacterized protein"	0.846	0.927	0.306	1.7e-52

TAIR|locus:2093731 AT3G24200 "AT3G24200" [Arabidopsis thaliana (taxid:3702)]

 Score = 1700 (603.5 bits), Expect = 5.3e-175, P = 5.3e-175
 Identities = 330/508 (64%), Positives = 382/508 (75%)

Query:     2 NRIIVGRLSVNVSGLRVLQRXXXXXXXXXXXXXXXXXXXXXXEVKQSFTNNDDQYDXXXX 61
             +R++   L  +V G R+LQR                          + T++  Q+D    
Sbjct:     4 DRVLARNLRTSVCGTRILQRTCSTVVTHDVSTSCSNESNAL----NNSTDDGPQHDIAIV 59

Query:    62 XXXXXXXXLACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFF 121
                     LA SLAS PLTKHL+VAIID+NP LG+ N I+K   PDPRVSTVTPATISF 
Sbjct:    60 GGGMVGIALAASLASKPLTKHLNVAIIDNNPLLGRRNIIEKGHQPDPRVSTVTPATISFL 119

Query:   122 KEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCM 181
             K+IGAW+Y++Q RHAYFDKMQVWDYTGLGYT+YNA DV++++LGCVVENKVL SS LSC+
Sbjct:   120 KDIGAWKYIEQQRHAYFDKMQVWDYTGLGYTRYNANDVHQDVLGCVVENKVLQSSQLSCV 179

Query:   182 QNTEFQKTIYPSRXXXXXXXXXXXXXXXXXXXXXXTLFTKGHLAKLDLSDGTSLYAKLVV 241
             Q ++ QKT+YP+R                       LF +G LAKL+LSDG  +YAKLVV
Sbjct:   180 QESDLQKTVYPARLNAMDMLPSSSLTGLGEVPSTTDLFMRGRLAKLELSDGNRVYAKLVV 239

Query:   242 GADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNFS 301
             GADG KSRVRELAG KTTGW+YSQNAIICTVEH  ENY AWQRFLP GPIALLPIGD FS
Sbjct:   240 GADGSKSRVRELAGIKTTGWNYSQNAIICTVEHTAENYTAWQRFLPNGPIALLPIGDKFS 299

Query:   302 NIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSA 361
             NIVWTM+PK+ASD K MNEDDF+K +N ALD GYGP+P++ SS   D  SW  GDAT+SA
Sbjct:   300 NIVWTMDPKEASDRKLMNEDDFIKAVNDALDSGYGPNPETTSSR--DSLSWLTGDATISA 357

Query:   362 KECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDA 421
             KE FE PP+VVKL+SERM+FPLSL+HA +YVSKRV L+GD+AHTVHPLAGQGVNLGF DA
Sbjct:   358 KERFETPPKVVKLSSERMMFPLSLRHAKDYVSKRVALVGDSAHTVHPLAGQGVNLGFADA 417

Query:   422 STLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRA 481
               LS+ IAEGIA+G DIGEA+LLK+YEAERKPANI MMAVLDG QK YS+DFGPLN LRA
Sbjct:   418 CALSKAIAEGIALGTDIGEANLLKRYEAERKPANIAMMAVLDGIQKMYSLDFGPLNALRA 477

Query:   482 AAFHGAQYISPLKRNIISYASGEQRLPL 509
             AAFHGA YISPLK+ IISYASGEQ LPL
Sbjct:   478 AAFHGAHYISPLKKRIISYASGEQSLPL 505

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

UNIPROTKB|F1PBF7 COQ6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
 Identities = 152/456 (33%), Positives = 240/456 (52%)

Query:    53 DDQYDXXXXXXXXXXXXLACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVST 112
             D  YD            +AC+L          + ++++ P   K  + K  +    RVS+
Sbjct:    34 DAVYDVVVSGGGLVGAAMACALGYNIHFHDKKILLLEAGP---KKVWEKLPETYSNRVSS 90

Query:   113 VTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKV 172
             ++P + +     GAW ++   R+  F +MQVWD        ++ +D N + +G +VEN V
Sbjct:    91 ISPGSATLLSSFGAWDHICNMRYRAFRRMQVWDACSEALIMFD-KD-NLDDMGYIVENDV 148

Query:   173 LHSSLLSCMQNTEFQKTI-YPSRXXXXXXXXXXXXXXXXXXXXXXTLFTKGHLAKLDLSD 231
             +  +L   ++    + T+ Y S+                      T+        + L D
Sbjct:   149 IMRALTKQLEAASDRVTVLYRSKAVGYTWPYPF------------TMADSSPWVHITLGD 196

Query:   232 GTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK--ENYCAWQRFLPAG 289
             G++L  KL+VGADG  S VR+ AG +   W+Y Q+A++ T+  ++  EN  AWQRFLP+G
Sbjct:   197 GSTLQTKLLVGADGHNSGVRQAAGIQNVSWNYDQSAVVATLHLSEATENNVAWQRFLPSG 256

Query:   290 PIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSI-SSGSVD 348
             PIALLP+ D  S++VW+ + + A++  SM+E+ FV  +N A  +    H   I S+G++ 
Sbjct:   257 PIALLPLSDTLSSLVWSTSHEHAAELVSMDEEKFVDAINSAF-WSDANHTDFIDSAGAML 315

Query:   349 MFSW-FRGDATLSAKECFEVPPRVVKL-ASERMVFPLSLKHANNYVSKRVVLIGDAAHTV 406
              ++  F     +SA++   +PP V ++ A  R++FPL L HA  YV  R+ LIGDAAH V
Sbjct:   316 QYAVAFLKPTKVSARQ---LPPSVARVDAKSRVLFPLGLGHAAEYVRPRLALIGDAAHRV 372

Query:   407 HPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQ 466
             HPLAGQGVN+GFGD S+L   ++     G D+G  S L  YE +R+  N  ++A  D  +
Sbjct:   373 HPLAGQGVNMGFGDVSSLVHHLSAAAFNGKDLGSMSHLTGYETDRQRHNTALLAATDLLK 432

Query:   467 KAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYAS 502
             + YS    PL +LR         +SPLK  I+++AS
Sbjct:   433 RLYSTSATPLVLLRTWGLQATNAVSPLKEQIMAFAS 468

GO:0005739 "mitochondrion" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

MGI|MGI:1924408 Coq6 "coenzyme Q6 homolog (yeast)" [Mus musculus (taxid:10090)]

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 152/456 (33%), Positives = 232/456 (50%)

Query:    53 DDQYDXXXXXXXXXXXXLACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVST 112
             D  YD            +AC+L          + ++++ P   K    K  +    RVS+
Sbjct:    41 DTVYDVVVSGGGLVGSAMACALGHDIHFHDKKILLLEAGP---KKALEKLSETYSNRVSS 97

Query:   113 VTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKV 172
             ++P + +     GAW ++   R   F +MQVWD        ++ RD N + +G +VEN V
Sbjct:    98 ISPGSTTLLSSFGAWDHICNMRCKAFRRMQVWDSCSEALIMFD-RD-NLDDMGYIVENDV 155

Query:   173 LHSSLLSCMQNTEFQ-KTIYPSRXXXXXXXXXXXXXXXXXXXXXXTLFTKGHLAKLDLSD 231
             +  +L   ++    + K +Y S+                            H+    L D
Sbjct:   156 IMYALTKQLEAVADRVKVLYESKAVGYSWPGAFSMADSSPWV---------HIT---LGD 203

Query:   232 GTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK--ENYCAWQRFLPAG 289
             G++L  KL++GADG KS VR+ AG +   W Y Q+A++ T+  ++  EN  AWQRFLP+G
Sbjct:   204 GSTLQTKLLIGADGHKSGVRQAAGIQNVSWKYDQSAVVATLHLSEATENNVAWQRFLPSG 263

Query:   290 PIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGS--V 347
             PIALLP+ D  S++VW+ + + A++  SM+E++FV  +N A  +    H   + S S  V
Sbjct:   264 PIALLPLSDTLSSLVWSTSHEHAAELVSMDEEEFVDAINSAF-WSDVHHTDFVDSASAMV 322

Query:   348 DMFSWFRGDATLSAKECFEVPPRVVKL-ASERMVFPLSLKHANNYVSKRVVLIGDAAHTV 406
                        +SA++   +PP + K+ A  R +FPL L HA  YV  RV LIGDAAH +
Sbjct:   323 RHAVALLKPTKVSARQ---LPPSIAKVDAKSRALFPLGLGHAAEYVRPRVALIGDAAHRI 379

Query:   407 HPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQ 466
             HPLAGQGVN+GFGD S+L   ++     G D+G  S L  YE +R+  N  ++A  D  +
Sbjct:   380 HPLAGQGVNMGFGDISSLVHHLSTAAFNGKDLGSMSHLTGYETDRQRHNTALLAATDLLK 439

Query:   467 KAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYAS 502
             + YS    PL +LR         +SPLK  I+++AS
Sbjct:   440 RLYSTSATPLVLLRTWGLQATNAVSPLKEQIMAFAS 475

GO:0003674 "molecular_function" evidence=ND

GO:0004497 "monooxygenase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|Q9Y2Z9 COQ6 "Ubiquinone biosynthesis monooxygenase COQ6" [Homo sapiens (taxid:9606)]

 Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
 Identities = 151/461 (32%), Positives = 239/461 (51%)

Query:    48 SFTNNDDQYDXXXXXXXXXXXXLACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPD 107
             S  + D  YD            +AC+L          + ++++ P   K    K  +   
Sbjct:    28 SGASTDTVYDVVVSGGGLVGAAMACALGYDIHFHDKKILLLEAGP---KKVLEKLSETYS 84

Query:   108 PRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCV 167
              RVS+++P + +     GAW ++   R+  F +MQVWD        ++ +D N + +G +
Sbjct:    85 NRVSSISPGSATLLSSFGAWDHICNMRYRAFRRMQVWDACSEALIMFD-KD-NLDDMGYI 142

Query:   168 VENKVLHSSLLSCMQNTEFQKTI-YPSRXXXXXXXXXXXXXXXXXXXXXXTLFTKGHLAK 226
             VEN V+  +L   ++    + T+ Y S+                            H+  
Sbjct:   143 VENDVIMHALTKQLEAVSDRVTVLYRSKAIRYTWPCPFPMADSSPWV---------HIT- 192

Query:   227 LDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK--ENYCAWQR 284
               L DG++   KL++GADG  S VR+  G +   W+Y Q+A++ T+  ++  EN  AWQR
Sbjct:   193 --LGDGSTFQTKLLIGADGHNSGVRQAVGIQNVSWNYDQSAVVATLHLSEATENNVAWQR 250

Query:   285 FLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSI-S 343
             FLP+GPIALLP+ D  S++VW+ + + A++  SM+E+ FV  +N A  +    H   I +
Sbjct:   251 FLPSGPIALLPLSDTLSSLVWSTSHEHAAELVSMDEEKFVDAVNSAF-WSDADHTDFIDT 309

Query:   344 SGSVDMFSWFRGDAT-LSAKECFEVPPRVVKL-ASERMVFPLSLKHANNYVSKRVVLIGD 401
             +G++  ++      T +SA++   +PP V ++ A  R++FPL L HA  YV  RV LIGD
Sbjct:   310 AGAMLQYAVSLLKPTKVSARQ---LPPSVARVDAKSRVLFPLGLGHAAEYVRPRVALIGD 366

Query:   402 AAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAV 461
             AAH VHPLAGQGVN+GFGD S+L+  ++     G D+G  S L  YE ER+  N  ++A 
Sbjct:   367 AAHRVHPLAGQGVNMGFGDISSLAHHLSTAAFNGKDLGSVSHLTGYETERQRHNTALLAA 426

Query:   462 LDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYAS 502
              D  ++ YS    PL +LR         +SPLK  I+++AS
Sbjct:   427 TDLLKRLYSTSASPLVLLRTWGLQATNAVSPLKEQIMAFAS 467

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

RGD|1311149 Coq6 "coenzyme Q6 homolog, monooxygenase (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
 Identities = 151/459 (32%), Positives = 234/459 (50%)

Query:    50 TNNDDQYDXXXXXXXXXXXXLACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPR 109
             ++ D  YD            +AC+L          + ++++ P   K    K  +    R
Sbjct:    38 SSTDSVYDVVVSGGGMVGSAMACALGHDIHFHDKKILLLEAGP---KKTLEKLSETYSNR 94

Query:   110 VSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVE 169
             VS+++  + +     GAW ++   R   F +MQVWD        ++ +D N + +G +VE
Sbjct:    95 VSSISLGSTTLLSSFGAWDHICNMRCKAFRRMQVWDSCSEALIMFD-KD-NLDDMGYIVE 152

Query:   170 NKVLHSSLLSCMQNTEFQ-KTIYPSRXXXXXXXXXXXXXXXXXXXXXXTLFTKGHLAKLD 228
             N V+  ++   ++    + K +Y S+                      +L        + 
Sbjct:   153 NDVIMHAITKQLEAVADRVKVLYESKAVGYAWPGPF------------SLADSSPWVHIT 200

Query:   229 LSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK--ENYCAWQRFL 286
             L DG++L  KL++GADG  S VR+ AG +  GW+Y Q+A++ T+  ++  EN  AWQRFL
Sbjct:   201 LGDGSTLQTKLLIGADGHNSGVRQAAGIQNVGWNYDQSAVVATLHLSEATENNVAWQRFL 260

Query:   287 PAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGS 346
             P+GPIALLP+ D  S++VW+ +   A++  SM+E++FV  +N A  +    H   + S S
Sbjct:   261 PSGPIALLPLSDTLSSLVWSTSHAHAAELVSMHEEEFVDAINSAF-WSDVHHTDFVDSAS 319

Query:   347 --VDMFSWFRGDATLSAKECFEVPPRVVKL-ASERMVFPLSLKHANNYVSKRVVLIGDAA 403
               V           +SA++   +PP V K+ A  R +FPL L HA  YV  RV LIGDAA
Sbjct:   320 AMVHHAVALLKPTKVSARQ---LPPSVAKVDAKSRALFPLGLGHAAEYVRPRVALIGDAA 376

Query:   404 HTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLD 463
             H VHPLAGQGVN+GFGD S+L   ++     G D+G  S L  YE +R+  N  ++A  D
Sbjct:   377 HRVHPLAGQGVNMGFGDISSLIHYLSTAAFNGKDLGSMSHLTGYETDRQRHNTALLAATD 436

Query:   464 GFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYAS 502
               ++ YS    PL +LR         +SPLK  I+++AS
Sbjct:   437 LLKRLYSTSTTPLVLLRTWGLQATNAVSPLKEQIMAFAS 475

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

UNIPROTKB|F1S3H4 COQ6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
 Identities = 147/454 (32%), Positives = 230/454 (50%)

Query:    53 DDQYDXXXXXXXXXXXXLACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVST 112
             D  YD            +AC+L          + ++++ P   K    K  +    RVS+
Sbjct:    41 DTVYDVVVSGGGMVGAAMACALGHDIHFGDKKILLLEAGP---KKVLGKLPETYSNRVSS 97

Query:   113 VTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKV 172
             ++P + +     GAW ++   R+  F +MQVWD        ++ +D N + +G +VEN V
Sbjct:    98 ISPGSATLLSSFGAWDHICNMRYRAFRRMQVWDACSEALIMFD-KD-NLDDMGYIVENDV 155

Query:   173 LHSSLLSCMQNTEFQKTI-YPSRXXXXXXXXXXXXXXXXXXXXXXTLFTKGHLAKLDLSD 231
             +  +L   ++    + T+ Y S+                            H+    L D
Sbjct:   156 IMQALTKQLEAVSDRVTVLYKSKAVSYTWPYPFSMADSSPWV---------HIT---LGD 203

Query:   232 GTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK--ENYCAWQRFLPAG 289
             G++L  KL++GADG  S VR+ AG +   W+Y Q+A++ T+  ++  EN  AWQRFLP+G
Sbjct:   204 GSTLQTKLLIGADGHNSGVRQAAGIRDVSWNYDQSAVVATLHLSEPTENNVAWQRFLPSG 263

Query:   290 PIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDM 349
             PIALLP+ D  S++VW+ + + A++  SM+E+ FV  +N A  +    H   + S S  +
Sbjct:   264 PIALLPLSDTLSSLVWSTSHEHAAELVSMDEEKFVDAINSAF-WSDANHTDLVDSAS-SV 321

Query:   350 FSWFRGDATLSAKECFEVPPRVVKL-ASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHP 408
               +       +     ++PP V K+ A  +++FPL L HA  YV  R+ LIGDAAH VHP
Sbjct:   322 LHYVVSILKPTKVSARQLPPSVAKVDAKSQVLFPLGLGHAAEYVRPRLALIGDAAHRVHP 381

Query:   409 LAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKA 468
             LAGQGVN+GFGD S+L   +      G D+G  S L  YE +R+  N  ++A  D  ++ 
Sbjct:   382 LAGQGVNMGFGDISSLVHHLRTAAFNGKDLGSMSHLTGYETDRQRHNTALLAATDLLKRL 441

Query:   469 YSVDFGPLNILRAAAFHGAQYISPLKRNIISYAS 502
             YS    PL +LR         +SPLK  I+++AS
Sbjct:   442 YSTSATPLVLLRTWGLQATNAVSPLKEQIMAFAS 475

GO:0005739 "mitochondrion" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

UNIPROTKB|Q2KIL4 COQ6 "Ubiquinone biosynthesis monooxygenase COQ6" [Bos taurus (taxid:9913)]

 Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
 Identities = 151/456 (33%), Positives = 235/456 (51%)

Query:    53 DDQYDXXXXXXXXXXXXLACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVST 112
             D+ YD            +AC+L          + ++++ P   K    K  +    RVS+
Sbjct:    34 DNVYDVVVSGGGLVGAAMACALGHDIHFCDKKILLLEAGP---KKVLEKLPETYSNRVSS 90

Query:   113 VTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKV 172
             ++P + +     GAW ++   R   F +MQVWD        ++ +D N + +G +VEN V
Sbjct:    91 ISPGSATLLSSFGAWDHICNMRCRAFRRMQVWDACSEALIMFD-KD-NLDDMGYIVENDV 148

Query:   173 LHSSLLSCMQNTEFQKTI-YPSRXXXXXXXXXXXXXXXXXXXXXXTLFTKGHLAKLDLSD 231
             +  +L   ++    Q T+ Y S+                            H+    L D
Sbjct:   149 IMHALTKQLEAVSDQVTVLYKSKAVSYTWPYPFSMADSSPWV---------HIT---LGD 196

Query:   232 GTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK--ENYCAWQRFLPAG 289
             G +L  KL++GADG  S VR+ AG +   W+Y Q+A++ T+  ++  EN  AWQRFLP+G
Sbjct:   197 GRTLQTKLLIGADGHNSGVRQAAGIRNVSWNYDQSAVVATLHLSEATENNVAWQRFLPSG 256

Query:   290 PIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSI-SSGSVD 348
             PIALLP+ D  S++VW+ + + A++  SM E++FV  +N A  +    H   I S+GS+ 
Sbjct:   257 PIALLPLSDTLSSLVWSTSHEHAAELVSMEEEEFVDAINSAF-WSDVNHTDFIDSAGSML 315

Query:   349 MFSW-FRGDATLSAKECFEVPPRVVKL-ASERMVFPLSLKHANNYVSKRVVLIGDAAHTV 406
               +  F     +SA++   +PP V ++ A  R++FPL L HA  YV  R+ LIGDAAH V
Sbjct:   316 QSAVAFLKPTRVSARQ---LPPSVARVDAKSRVLFPLGLGHAAEYVRPRLALIGDAAHRV 372

Query:   407 HPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQ 466
             HPLAGQGVN+GFGD S+L   ++     G D+G  S L  YE +R+  N  ++A  D  +
Sbjct:   373 HPLAGQGVNMGFGDISSLLHHLSTAAFNGKDLGSMSHLTSYETDRQRHNTALLAATDLLK 432

Query:   467 KAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYAS 502
             + YS     + +LR         +SPLK  I+++AS
Sbjct:   433 RLYSTRATLVVLLRTWGLQATNAVSPLKEQIMAFAS 468

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=IEA

ZFIN|ZDB-GENE-060825-297 coq6 "coenzyme Q6 homolog, monooxygenase (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 137/461 (29%), Positives = 234/461 (50%)

Query:    46 KQSFTNNDDQYDXXXXXXXXXXXXLACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDP 105
             + S T+ ++ +D            +ACSL   P      + ++++     +    K  + 
Sbjct:    41 QDSSTSENELFDIIISGGGMVGTAMACSLGLDPNLTGKKILLLEAGH---EKKMDKIPET 97

Query:   106 PDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILG 165
                RVS+++P + +    +GAW ++   R   ++KMQVWD        ++  ++  E + 
Sbjct:    98 YSTRVSSISPGSATLLSGLGAWDHIVNMRCKPYNKMQVWDACSDALITFDKENLQDE-MA 156

Query:   166 CVVENKVLHSSLLSCMQN-TEFQKTIYPSRXXXXXXXXXXXXXXXXXXXXXXTLFTKGHL 224
              +VEN V+ ++L   +Q  ++  K  Y ++                              
Sbjct:   157 YIVENDVIVAALTKQLQTLSDHVKVQYRTKVVKYTWPHPYHVSESIPW------------ 204

Query:   225 AKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK--ENYCAW 282
              ++ L++G +L+ KL++GADG  S VR  AG  T  W+Y Q+A++  +  ++  EN  AW
Sbjct:   205 VQVALANGKTLHTKLLIGADGPNSMVRREAGIPTVKWNYDQSAVVAVLHLSEPTENNVAW 264

Query:   283 QRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSI 342
             QRFLP GPIA+LP+ D  S++VW+ + + A +   M+E+ FV  +N A  +    H + +
Sbjct:   265 QRFLPTGPIAMLPLSDTESSLVWSTSHQHAEELLQMDEESFVDAINSAF-WSNENHSELV 323

Query:   343 SSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASE-RMVFPLSLKHANNYVSKRVVLIGD 401
              +    +F          +    ++PP V  +  + R++FPL + HA  Y+  RV LIGD
Sbjct:   324 ETAG-SLFRMALSVLMPDSGSARQLPPSVSGIGPKSRVMFPLGMGHATEYIRHRVALIGD 382

Query:   402 AAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAV 461
             AAH VHPLAGQG NLGFGD S L++++++    G DIG    L ++E ER+  N+ MM  
Sbjct:   383 AAHRVHPLAGQGANLGFGDVSYLTQVLSQAAYNGKDIGAMQHLLEFETERQRHNLPMMTA 442

Query:   462 LDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYAS 502
             +D  ++ YS +  P+ +LR         + PLK  I+++AS
Sbjct:   443 IDLMKRLYSSNTAPMVLLRTFGLQATNAVPPLKEQIMAFAS 483

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004497 "monooxygenase activity" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

DICTYBASE|DDB_G0291440 coq6 "monooxygenase" [Dictyostelium discoideum (taxid:44689)]

 Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
 Identities = 152/482 (31%), Positives = 233/482 (48%)

Query:    48 SFTNNDDQYDXXXXXXXXXXXXLACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPD 107
             S  N D+ YD            +ACS+ +   TKHL VA+I+S+        I    P +
Sbjct:    30 STINKDNIYDIIIIGGGLVGSTMACSIGNNNTTKHLKVALIESSKIQTVEQSISNAIP-E 88

Query:   108 PRVSTVTPATISFFKEIGAWQYVQQHRHAY-FDKMQVWDYTGLGYTKYNARDV-----NK 161
              R  +    TI  FK I  W  ++  +    F++++VWD +G     +   D+     N 
Sbjct:    89 IRTISFNNQTIELFKSINVWDTIKSTKRVNPFNQVRVWDTSGFEGIHFQDNDIIDDGNNT 148

Query:   162 EILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRXXXXXXXXXXXXXXXXXXXXXXTLFTK 221
               +G ++EN ++ SSLLS ++  +F+                             T+ T 
Sbjct:   149 TAMGYIIENNIVTSSLLSKVK--QFENI----------ELFEQLSVKSMNDYNEETIRTT 196

Query:   222 GHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVE-------- 273
               L  + LS+   L+AKL++GADGG S +++     + G  Y+Q A++CT++        
Sbjct:   197 SILPSVTLSNDQQLHAKLIIGADGGNSILKKQLQVPSIGRVYNQKAVVCTLKLGIKQDNN 256

Query:   274 ------HNKENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKIL 327
                   +N  N   +QRFLP GPIALLP+ + ++NI+W+ N   A     ++++ F   L
Sbjct:   257 NNSSNNNNNNNNTLFQRFLPTGPIALLPLANGYANIIWSTNLMHAQYLLELDDESF---L 313

Query:   328 NHALDYGYGPHPKSISSGSVDMFS-WFR-GDATLSAKECFEVPPRVVKLASERMVFPLSL 385
                 D  +   P + +S   ++ S  F      LS  E + +PP +  L S+R  FPL +
Sbjct:   314 EQVKD-SFLKSPSTSNSSFFEIASNLFNLNPKGLSGNEIY-LPP-IEGLVSKRASFPLRI 370

Query:   386 KHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLK 445
              H  NY   RV  IGDA+H VHP+AGQGVNLG  D  TLS II + +  G DIG+A +LK
Sbjct:   371 DHTFNYTLPRVCFIGDASHLVHPMAGQGVNLGMADVKTLSSIIEQSVQSGYDIGDAMMLK 430

Query:   446 KYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ 505
             ++E  RKP N+ M+  +D     ++ +   +  LR         ISPLK  II  + GE 
Sbjct:   431 RFEEIRKPENLKMLLSIDTLFNLFTNNSIFVTGLRNFGMSLLNNISPLKNLIIGVSKGES 490

Query:   506 RL 507
              L
Sbjct:   491 IL 492

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0004497 "monooxygenase activity" evidence=IEA

UNIPROTKB|F1NBR7 COQ6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
 Identities = 141/460 (30%), Positives = 224/460 (48%)

Query:    47 QSFTNNDDQYDXXXXXXXXXXXXLACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPP 106
             +S T+    YD            +A +L          +A++++ P   +  +   E   
Sbjct:    30 RSLTSAAPLYDVVVSGGGMVGSAMAAALGHDIHFHDKKIALLEAGP---RKEYHLPESYS 86

Query:   107 DPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGC 166
             + RVS+++P + +     GAW +V   R   F +MQVWD        +   D++   +G 
Sbjct:    87 N-RVSSISPGSATLLSSFGAWDHVCNLRCKPFRRMQVWDACSEAIITFEKDDLDD--MGY 143

Query:   167 VVENKVLHSSLLSCMQNTEFQ-KTIYPSRXXXXXXXXXXXXXXXXXXXXXXTLFTKGHLA 225
             +VEN V+ S++   +     + +  Y SR                               
Sbjct:   144 IVENDVVMSAVTKQLDAVADRVEVFYGSRAVGYTWPLPSHSCDTSPW------------V 191

Query:   226 KLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK--ENYCAWQ 283
             +++L+DG  L  KL++GADG  S VR+ A  +     Y Q+A++ T+  ++  +N  AWQ
Sbjct:   192 QVELADGRRLQTKLLIGADGHNSVVRKEAEIQNIEHQYDQSAVVATLHLSEATDNNVAWQ 251

Query:   284 RFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSIS 343
             RFLP GPIALLP+ D  S++VW+ + + AS+  +M+++ FV  +N A  +    H   I 
Sbjct:   252 RFLPTGPIALLPLSDTASSLVWSTSHEHASELLTMDKESFVDSINSAF-WSNVNHSDFID 310

Query:   344 SGSVDMFSWFRGDATLSAKECFEVPPRVVKLASE-RMVFPLSLKHANNYVSKRVVLIGDA 402
             +    MF         S     ++PP V  +  E R VFPL + HA  YV  RV LIGDA
Sbjct:   311 AAGA-MFRSALSLLKPSGTAVRQLPPSVANVDPESRAVFPLGMGHATEYVRHRVALIGDA 369

Query:   403 AHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVL 462
             AH VHPLAGQGVNLGFGD + L+  ++     G D+G    L ++E ER+  N+ ++  +
Sbjct:   370 AHRVHPLAGQGVNLGFGDIACLTHHLSAAAFNGQDLGSLKHLLRFETERQRHNVSLIGAI 429

Query:   463 DGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYAS 502
             D  ++ YS    PL +LR         + P+K  I+++AS
Sbjct:   430 DLLKRLYSTSLSPLVLLRTWGLQATNALPPVKEQIMAFAS 469

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q68FU7	COQ6_RAT	1, ., 1, 4, ., 1, 3, ., -	0.3520	0.8466	0.9159	yes	no
Q2KIL4	COQ6_BOVIN	1, ., 1, 4, ., 1, 3, ., -	0.3530	0.8330	0.9147	yes	no
P53318	COQ6_YEAST	1, ., 1, 4, ., 1, 3, ., -	0.3059	0.8291	0.8914	yes	no
Q9Y2Z9	COQ6_HUMAN	1, ., 1, 4, ., 1, 3, ., -	0.3426	0.8446	0.9294	yes	no
Q8R1S0	COQ6_MOUSE	1, ., 1, 4, ., 1, 3, ., -	0.3477	0.8893	0.9621	yes	no
F1RAX8	COQ6_DANRE	1, ., 1, 4, ., 1, 3, ., -	0.3254	0.8932	0.9504	yes	no
Q6DF46	COQ6_XENTR	1, ., 1, 4, ., 1, 3, ., -	0.3458	0.8252	0.9159	yes	no
Q54EN1	COQ6_DICDI	1, ., 1, 4, ., 1, 3, ., -	0.3237	0.8699	0.9050	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.14.13	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	515
TIGR01989	437	TIGR01989, COQ6, ubiquinone biosynthesis monooxyge	1e-171
TIGR01988	387	TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hyd	1e-145
COG0654	387	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox	1e-79
PRK08020	391	PRK08020, ubiF, 2-octaprenyl-3-methyl-6-methoxy-1,	4e-78
TIGR01984	382	TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hy	1e-76
PRK08850	405	PRK08850, PRK08850, 2-octaprenyl-6-methoxyphenol h	1e-76
PRK05714	405	PRK05714, PRK05714, 2-octaprenyl-3-methyl-6-methox	1e-75
PRK07364	415	PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl h	6e-74
PRK08849	384	PRK08849, PRK08849, 2-octaprenyl-3-methyl-6-methox	2e-70
PRK07333	403	PRK07333, PRK07333, 2-octaprenyl-6-methoxyphenyl h	5e-70
PRK07608	388	PRK07608, PRK07608, ubiquinone biosynthesis hydrox	2e-67
PRK08013	400	PRK08013, PRK08013, oxidoreductase; Provisional	3e-67
PRK08773	392	PRK08773, PRK08773, 2-octaprenyl-3-methyl-6-methox	8e-65
PRK05732	395	PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl h	6e-60
PRK09126	392	PRK09126, PRK09126, hypothetical protein; Provisio	5e-45
PRK07494	388	PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl h	5e-44
PRK06996	398	PRK06996, PRK06996, hypothetical protein; Provisio	5e-37
PRK06617	374	PRK06617, PRK06617, 2-octaprenyl-6-methoxyphenyl h	3e-29
pfam01494	349	pfam01494, FAD_binding_3, FAD binding domain	1e-16
PRK06834	488	PRK06834, PRK06834, hypothetical protein; Provisio	2e-15
PRK06126	545	PRK06126, PRK06126, hypothetical protein; Provisio	5e-14
PRK06184	502	PRK06184, PRK06184, hypothetical protein; Provisio	1e-10
PRK07045	388	PRK07045, PRK07045, putative monooxygenase; Review	3e-10
PRK06183	500	PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydr	3e-09
PRK08244	493	PRK08244, PRK08244, hypothetical protein; Provisio	1e-08
PRK06185	407	PRK06185, PRK06185, hypothetical protein; Provisio	3e-08
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	1e-07
PRK08255	765	PRK08255, PRK08255, salicylyl-CoA 5-hydroxylase; R	3e-07
TIGR03219	414	TIGR03219, salicylate_mono, salicylate 1-monooxyge	7e-07
PRK07236	386	PRK07236, PRK07236, hypothetical protein; Provisio	5e-06
PRK07538	413	PRK07538, PRK07538, hypothetical protein; Provisio	1e-05
PRK07190	487	PRK07190, PRK07190, hypothetical protein; Provisio	4e-05
PRK06475	400	PRK06475, PRK06475, salicylate hydroxylase; Provis	9e-05
PTZ00367	567	PTZ00367, PTZ00367, squalene epoxidase; Provisiona	2e-04
TIGR02023	388	TIGR02023, BchP-ChlP, geranylgeranyl reductase	2e-04
PRK06753	373	PRK06753, PRK06753, hypothetical protein; Provisio	5e-04
TIGR02028	398	TIGR02028, ChlP, geranylgeranyl reductase	6e-04
PRK06847	375	PRK06847, PRK06847, hypothetical protein; Provisio	6e-04
COG0665	387	COG0665, DadA, Glycine/D-amino acid oxidases (deam	6e-04
PRK08294	634	PRK08294, PRK08294, phenol 2-monooxygenase; Provis	7e-04
PRK08243	392	PRK08243, PRK08243, 4-hydroxybenzoate 3-monooxygen	0.001
PRK06185	407	PRK06185, PRK06185, hypothetical protein; Provisio	0.003
pfam08491	276	pfam08491, SE, Squalene epoxidase	0.003
pfam01266	234	pfam01266, DAO, FAD dependent oxidoreductase	0.003
TIGR03364	365	TIGR03364, HpnW_proposed, FAD dependent oxidoreduc	0.003
PRK06481	506	PRK06481, PRK06481, fumarate reductase flavoprotei	0.003

>gnl|CDD|233672 TIGR01989, COQ6, ubiquinone biosynthesis monooxygenase COQ6

 Score =  489 bits (1260), Expect = e-171
 Identities = 202/451 (44%), Positives = 280/451 (62%), Gaps = 22/451 (4%)

Query: 56  YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDS--NPALGKSNFIKKEDPPDPRVSTV 113
           +DV +VGGG VG+ALA +L + PLTK L V ++D+  NP L   N+ K + P   RVS++
Sbjct: 1   FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSI 60

Query: 114 TPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVL 173
           TPA+ISFFK+IGAW ++Q  R   F +MQVWD   L   ++  RD  KE + C++EN  +
Sbjct: 61  TPASISFFKKIGAWDHIQSDRIQPFGRMQVWDGCSLALIRF-DRDNGKEDMACIIENDNI 119

Query: 174 HSSLLSCMQ--NTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD 231
            +SL + +Q  N +  K + P+RL S+ + PS       +               + LSD
Sbjct: 120 QNSLYNRLQEYNGDNVKILNPARLISVTI-PSKYPNDNSN------------WVHITLSD 166

Query: 232 GTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEH--NKENYCAWQRFLPAG 289
           G  LY KL++GADG  S VR+ A   TTGW+Y+Q+A++ T++     EN  AWQRFLP G
Sbjct: 167 GQVLYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVATLKLEEATENDVAWQRFLPTG 226

Query: 290 PIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSG-SVD 348
           PIALLP+ DN S +VW+ +P++A    S+  +DFV  LN A D GY  HP S     +++
Sbjct: 227 PIALLPLPDNNSTLVWSTSPEEALRLLSLPPEDFVDALNAAFDLGYSDHPYSYLLDYAME 286

Query: 349 MFSWFRGDATLSAKECFEVPPRVVKLASE-RMVFPLSLKHANNYVSKRVVLIGDAAHTVH 407
             +   G  T  +K CF+VPPRV+ +  + R  FPL L HA+ YV+KRV L+GDAAH VH
Sbjct: 287 KLNEDIGFRTEGSKSCFQVPPRVIGVVDKSRAAFPLGLGHADEYVTKRVALVGDAAHRVH 346

Query: 408 PLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQK 467
           PLAGQGVNLGFGD ++L + +AE ++VGADIG  S LK YE ER   N+V++ ++D   K
Sbjct: 347 PLAGQGVNLGFGDVASLVKALAEAVSVGADIGSISSLKPYERERYAKNVVLLGLVDKLHK 406

Query: 468 AYSVDFGPLNILRAAAFHGAQYISPLKRNII 498
            Y+ DF P+  LR    +   YI PLK  I+
Sbjct: 407 LYATDFPPVVALRTFGLNLTNYIGPLKNFIM 437

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone. Length = 437

>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

 Score =  422 bits (1088), Expect = e-145
 Identities = 153/449 (34%), Positives = 221/449 (49%), Gaps = 64/449 (14%)

Query: 57  DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPA 116
           D+ +VGGG VG+ALA +LA       L VA+I++ P          +   D RVS ++ A
Sbjct: 1   DIVIVGGGPVGLALALALARSG---GLKVALIEATPLPAP-----ADPGFDNRVSALSAA 52

Query: 117 TISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSS 176
           +I   +++G W  ++  R      + V D    G   ++A ++  E LG VVEN+VL  +
Sbjct: 53  SIRLLEKLGVWDKIEPARAQPIRDIHVSDGGSFGALHFDADEIGLEALGYVVENRVLQQA 112

Query: 177 LLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP-SATTLFTKGHLAKLDLSDGTSL 235
           L   +Q    + TI                      P     L       +L L DG  L
Sbjct: 113 LWERLQELPNRVTIL--------------------CPARVVELPRHSDHVELTLDDGQQL 152

Query: 236 YAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEH-NKENYCAWQRFLPAGPIALL 294
            A+L+VGADG  S+VR+LAG  TTGW Y Q+A++  V+H       AW+RF P GP+ALL
Sbjct: 153 RARLLVGADGANSKVRQLAGIPTTGWDYGQSAVVANVKHERPHQGTAWERFTPTGPLALL 212

Query: 295 PIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFR 354
           P+ DN S++VWT+ P++A    ++++++F+  L  A     G                  
Sbjct: 213 PLPDNRSSLVWTLPPEEAERLLALSDEEFLAELQRAFGSRLGA----------------- 255

Query: 355 GDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGV 414
                            + L  ER  FPLSL HA  YV+ R+ LIGDAAHT+HPLAGQG+
Sbjct: 256 -----------------ITLVGERHAFPLSLTHAKRYVAPRLALIGDAAHTIHPLAGQGL 298

Query: 415 NLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFG 474
           NLG  D + L+ ++ +    G DIG   +L++YE  R+  N  M+   DG  + +S DF 
Sbjct: 299 NLGLRDVAALAEVLEDARRRGEDIGSPRVLQRYERRRRFDNAAMLGATDGLNRLFSNDFP 358

Query: 475 PLNILRAAAFHGAQYISPLKRNIISYASG 503
           PL +LR         + PLK  I   A G
Sbjct: 359 PLRLLRNLGLRLLNNLPPLKNFIAKQAMG 387

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4,) and UbiF (which acts at position 5,). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homolog in this subfamily (COQ6,) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 387

>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score =  253 bits (648), Expect = 1e-79
 Identities = 127/452 (28%), Positives = 191/452 (42%), Gaps = 70/452 (15%)

Query: 54  DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTV 113
              DVA+VG G  G+ALA +LA   L     V +++  P          E     R   +
Sbjct: 1   KMLDVAIVGAGPAGLALALALARAGL----DVTLLERAPR---------ELLERGRGIAL 47

Query: 114 TPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVL 173
           +P  +   + +G W  ++         M V D  G     ++A ++ +  LG VV    L
Sbjct: 48  SPNALRALERLGLWDRLEALGVPPLHVMVVDD-GGRRLLIFDAAELGRGALGYVVPRSDL 106

Query: 174 HSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT 233
            ++LL   +        + + + ++       ++++                     DG 
Sbjct: 107 LNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSF-------------------DGE 147

Query: 234 SLYAKLVVGADGGKSRVRELAGFKTT-GWSYSQNAIICTVEHNKE-NYCAWQRFLPAGPI 291
           +L A L+VGADG  S VR  AG     G  Y Q A++  VE  +     A +RF  AGP 
Sbjct: 148 TLDADLLVGADGANSAVRRAAGIAEFSGRDYGQTALVANVEPEEPHEGRAGERFTHAGPF 207

Query: 292 ALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFS 351
           ALLP+ DN S++VW++ P  A D + +++++F++ L   L                    
Sbjct: 208 ALLPLPDNRSSVVWSLPPGPAEDLQGLSDEEFLRELQRRLG------------------- 248

Query: 352 WFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAG 411
                           P   V L S R  FPLSL+ A  Y   RVVLIGDAAH +HPLAG
Sbjct: 249 -------------ERDPLGRVTLVSSRSAFPLSLRVAERYRRGRVVLIGDAAHAMHPLAG 295

Query: 412 QGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSV 471
           QG NL   DA+ L+  +A     GAD   A+ L  YEA R+P    +  +     + +S 
Sbjct: 296 QGANLALEDAAALAEALAAAPRPGAD---AAALAAYEARRRPRAEAIQKLSRALGRLFSA 352

Query: 472 DFGPLNILRAAAFHGAQYISPLKRNIISYASG 503
           D      LR         + PL+  +   A+G
Sbjct: 353 DGPFARFLRNLGLRLLDRLPPLREALARLAAG 384

Length = 387

>gnl|CDD|181199 PRK08020, ubiF, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

 Score =  249 bits (638), Expect = 4e-78
 Identities = 129/455 (28%), Positives = 213/455 (46%), Gaps = 67/455 (14%)

Query: 51  NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIID-SNPALGKSNFIKKEDPPDPR 109
             +   D+A+VGGGMVG ALA  LA        SVA+++ + PA         +  PD R
Sbjct: 1   MTNQPTDIAIVGGGMVGAALALGLAQ----HGFSVAVLEHAAPAP-----FDADSQPDVR 51

Query: 110 VSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVE 169
           +S ++ A+++  K +G W  VQ  R   + +++ W++    +  ++A ++    LG +VE
Sbjct: 52  ISAISAASVALLKGLGVWDAVQAMRSHPYRRLETWEWET-AHVVFDAAELKLPELGYMVE 110

Query: 170 NKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL 229
           N+VL  +L   ++         P+ L ++                           +L L
Sbjct: 111 NRVLQLALWQALEAHPNVTLRCPASLQALQ-------------------RDDDGW-ELTL 150

Query: 230 SDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVE-HNKENYCAWQRFLPA 288
           +DG  + AKLV+GADG  S+VR++AG    GW Y Q+ ++ +V+  N      WQ+F P+
Sbjct: 151 ADGEEIQAKLVIGADGANSQVRQMAGIGVHGWQYRQSCMLISVKCENPPGDSTWQQFTPS 210

Query: 289 GPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVD 348
           GP A LP+ DN++++VW  +P      ++M+     + +        G     +++G+  
Sbjct: 211 GPRAFLPLFDNWASLVWYDSPARIRQLQAMSMAQLQQEIAAHFPARLGA-VTPVAAGA-- 267

Query: 349 MFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHP 408
                                           FPL+ +HA  YV   + L+GDAAHT++P
Sbjct: 268 --------------------------------FPLTRRHALQYVQPGLALVGDAAHTINP 295

Query: 409 LAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKA 468
           LAGQGVNLG+ D   L  ++    + G      ++LK+Y+  R   N++M + +D F   
Sbjct: 296 LAGQGVNLGYRDVDALLDVLVNARSYGEAWASEAVLKRYQRRRMADNLLMQSGMDLFYAG 355

Query: 469 YSVDFGPLNILRAAAFHGAQYISPLKRNIISYASG 503
           +S +  PL   R      AQ    LKR  + YA G
Sbjct: 356 FSNNLPPLRFARNLGLMAAQRAGVLKRQALKYALG 390

Length = 391

>gnl|CDD|233669 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hydroxylase

 Score =  245 bits (628), Expect = 1e-76
 Identities = 128/449 (28%), Positives = 199/449 (44%), Gaps = 69/449 (15%)

Query: 57  DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPA 116
           DV +VGGG+VG++LA +L+   L K + +A+I++N     +         D R   ++  
Sbjct: 1   DVIIVGGGLVGLSLALALSR--LGK-IKIALIEANSP-SAAQPGF-----DARSLALSYG 51

Query: 117 TISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSS 176
           +    +++G W  +          + V D    G T   A +     LG VVE   L  +
Sbjct: 52  SKQILEKLGLWPKLA-PFATPILDIHVSDQGHFGATHLRASEFGLPALGYVVELADLGQA 110

Query: 177 LLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLY 236
           LLS +             LT++ L   +    +                 LD  +G  L 
Sbjct: 111 LLSRLAL-----------LTNIQLYCPARYKEIIRNQD-------YVRVTLD--NGQQLR 150

Query: 237 AKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK-ENYCAWQRFLPAGPIALLP 295
           AKL++ ADG  S+VREL    T    Y+Q A+I  + H +    CA++RF P GP+ALLP
Sbjct: 151 AKLLIAADGANSKVRELLSIPTEEHDYNQTALIANIRHEQPHQGCAFERFTPHGPLALLP 210

Query: 296 IGDNF-SNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFR 354
           + DN+ S++VW +  K A    ++ + +F+  L  A                   F W  
Sbjct: 211 LKDNYRSSLVWCLPSKQADTIANLPDAEFLAELQQA-------------------FGWRL 251

Query: 355 GDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGV 414
           G                +    ER  +PL L+ A  +V  RVVLIG+AA T+HP+AGQG 
Sbjct: 252 GK---------------ITQVGERKTYPLKLRIAETHVHPRVVLIGNAAQTLHPIAGQGF 296

Query: 415 NLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFG 474
           NLG  D  TL+ ++   I    D+G  +LL++Y   R+    + + + DG  + +S    
Sbjct: 297 NLGLRDVETLAEVL---IDARIDLGTYALLQEYLRRRQFDQFITIGLTDGLNRLFSNHIP 353

Query: 475 PLNILRAAAFHGAQYISPLKRNIISYASG 503
            L  LR       +   PLK+ +   A G
Sbjct: 354 LLRALRNLGLLALENFPPLKKRLARQAMG 382

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 382

>gnl|CDD|236341 PRK08850, PRK08850, 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

 Score =  246 bits (629), Expect = 1e-76
 Identities = 141/455 (30%), Positives = 217/455 (47%), Gaps = 77/455 (16%)

Query: 57  DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDS---NPALGKSNFIKKEDPPDPRVSTV 113
           DVA++GGGMVG+ALA +L        L +A+I+      AL +         PD RVS +
Sbjct: 6   DVAIIGGGMVGLALAAALKE----SDLRIAVIEGQLPEEALNEL--------PDVRVSAL 53

Query: 114 TPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVL 173
           + ++    + +GAWQ ++  R A +  M+VW+       +++A  + +  LG +VEN+V+
Sbjct: 54  SRSSEHILRNLGAWQGIEARRAAPYIAMEVWEQDSFARIEFDAESMAQPDLGHIVENRVI 113

Query: 174 HSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT 233
             +LL  +Q  +    + P+R  S+A+  S + ++                    L +G 
Sbjct: 114 QLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLT--------------------LDNGQ 153

Query: 234 SLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVE----HNKENYCAWQRFLPAG 289
           +L AKLVVGADG  S +R       T W Y  +A++  V     HN     A Q F P G
Sbjct: 154 ALTAKLVVGADGANSWLRRQMDIPLTHWDYGHSALVANVRTVDPHNS---VARQIFTPQG 210

Query: 290 PIALLPIGD-NFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVD 348
           P+A LP+ + N S+IVW+  P  A    +M+++ F K L    D   G            
Sbjct: 211 PLAFLPMSEPNMSSIVWSTEPLRAEALLAMSDEQFNKALTAEFDNRLG------------ 258

Query: 349 MFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHP 408
                                 + ++  ER  FPL +++A ++V +RV L+GDAAHT+HP
Sbjct: 259 ----------------------LCEVVGERQAFPLKMRYARDFVRERVALVGDAAHTIHP 296

Query: 409 LAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKA 468
           LAGQGVNLG  DA++L++ I      G DIG    L+ YE  RK     M+A + GF+  
Sbjct: 297 LAGQGVNLGLLDAASLAQEILALWQQGRDIGLKRNLRGYERWRKAEAAKMIAAMQGFRDL 356

Query: 469 YSVDFGPLNILRAAAFHGAQYISPLKRNIISYASG 503
           +S       ++R      A  +   K  I+  A G
Sbjct: 357 FSGSNPAKKLVRGIGMSLAGQLPGAKDEIMKRALG 391

Length = 405

>gnl|CDD|168201 PRK05714, PRK05714, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

 Score =  243 bits (623), Expect = 1e-75
 Identities = 140/429 (32%), Positives = 211/429 (49%), Gaps = 66/429 (15%)

Query: 57  DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPA 116
           D+ +VG GMVG ALA +L        L V ++D  P L    F   + P +PRVS ++ A
Sbjct: 4   DLLIVGAGMVGSALALALQG----SGLEVLLLDGGP-LSVKPF-DPQAPFEPRVSALSAA 57

Query: 117 TISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSS 176
           +    + +GAW  +   R + + +MQVWD +G G   ++A  V+ E+LG +VEN+V+  +
Sbjct: 58  SQRILERLGAWDGIAARRASPYSEMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDA 117

Query: 177 LLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLY 236
           LL  + +++            + LL ++             +   G    L L+DG  L 
Sbjct: 118 LLERLHDSD------------IGLLANAR---------LEQMRRSGDDWLLTLADGRQLR 156

Query: 237 AKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVE-HNKENYCAWQRFLPAGPIALLP 295
           A LVV ADG  S VR LAG  T  W Y  +AI+ +V         AWQRF   GP+A LP
Sbjct: 157 APLVVAADGANSAVRRLAGCATREWDYLHHAIVTSVRCSEPHRATAWQRFTDDGPLAFLP 216

Query: 296 I----GDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFS 351
           +     +++ +IVW+  P++A    ++++D F   L  A                   F 
Sbjct: 217 LERDGDEHWCSIVWSTTPEEAERLMALDDDAFCAALERA-------------------FE 257

Query: 352 WFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAG 411
              G+               V  A  R+  PL  +HA  YV   + LIGDAAHT+HPLAG
Sbjct: 258 GRLGE---------------VLSADPRLCVPLRQRHAKRYVEPGLALIGDAAHTIHPLAG 302

Query: 412 QGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSV 471
           QGVNLGF DA+ L+ ++      G  + +  +L ++E  R P N+ +MA ++GF++ +  
Sbjct: 303 QGVNLGFLDAAVLAEVLLHAAERGERLADVRVLSRFERRRMPHNLALMAAMEGFERLFQA 362

Query: 472 DFGPLNILR 480
           D  PL  LR
Sbjct: 363 DPLPLRWLR 371

Length = 405

>gnl|CDD|236001 PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

 Score =  239 bits (612), Expect = 6e-74
 Identities = 129/467 (27%), Positives = 217/467 (46%), Gaps = 67/467 (14%)

Query: 38  QPSSESEVKQSFTNNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS 97
             ++ S    S  +    YDVA+VGGG+VG+ LA +L        L +A+I++ PA    
Sbjct: 3   LTAATSPTLPSTRSLT--YDVAIVGGGIVGLTLAAALKD----SGLRIALIEAQPA---E 53

Query: 98  NFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNAR 157
               K      +   ++  +   F+ IG W+ +       F ++++ D    G  K+   
Sbjct: 54  AAAAK-----GQAYALSLLSARIFEGIGVWEKILPQI-GKFRQIRLSDADYPGVVKFQPT 107

Query: 158 DVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATT 217
           D+  E LG V E++VL  +L   +Q+      + P+ + S+     +++++++      T
Sbjct: 108 DLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQT 167

Query: 218 LFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK- 276
           L                  +KLVV ADG +S +R+ AG KT GW Y Q+ +  TV+H   
Sbjct: 168 L-----------------QSKLVVAADGARSPIRQAAGIKTKGWKYWQSCVTATVKHEAP 210

Query: 277 ENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYG 336
            N  A++RF P+GP A+LP+  N   IVWT     A    ++ E +F+  L        G
Sbjct: 211 HNDIAYERFWPSGPFAILPLPGNRCQIVWTAPHAQAKALLALPEAEFLAELQQRYGDQLG 270

Query: 337 PHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRV 396
                                              ++L  +R +FP+ L  ++ YV  R+
Sbjct: 271 K----------------------------------LELLGDRFLFPVQLMQSDRYVQHRL 296

Query: 397 VLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANI 456
            L+GDAAH  HP+ GQG+NLG  DA+ L++++      G DIG  ++LK+YE  RK  N 
Sbjct: 297 ALVGDAAHCCHPVGGQGLNLGIRDAAALAQVLQTAHQRGEDIGSLAVLKRYERWRKRENW 356

Query: 457 VMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASG 503
           +++   D   + +S  + PL ++R       +++ PLKR  +   +G
Sbjct: 357 LILGFTDLLDRLFSNQWWPLVVVRRLGLWLLRHVPPLKRLALRLMTG 403

Length = 415

>gnl|CDD|181564 PRK08849, PRK08849, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

 Score =  229 bits (585), Expect = 2e-70
 Identities = 132/455 (29%), Positives = 208/455 (45%), Gaps = 78/455 (17%)

Query: 54  DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTV 113
           ++YD+AVVGGGMVG A A   A     +  SVA+I+     G+    +   P D RVS +
Sbjct: 2   NKYDIAVVGGGMVGAATALGFAK----QGRSVAVIEG----GEPKAFEPSQPMDIRVSAI 53

Query: 114 TPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVL 173
           +  ++   + +GAW  +   R   + +++ W++     T++++ ++N + LG +VEN+++
Sbjct: 54  SQTSVDLLESLGAWSSIVAMRVCPYKRLETWEHPEC-RTRFHSDELNLDQLGYIVENRLI 112

Query: 174 HSSL---LSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS 230
              L    +   N      + P +L  +                      +G+   + L 
Sbjct: 113 QLGLWQQFAQYPNLTL---MCPEKLADL------------------EFSAEGNR--VTLE 149

Query: 231 DGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENY-CAWQRFLPAG 289
            G  + AK V+GADG  S+VR+LAG   T W Y Q+ ++  VE  +      WQ+F P+G
Sbjct: 150 SGAEIEAKWVIGADGANSQVRQLAGIGITAWDYRQHCMLINVETEQPQQDITWQQFTPSG 209

Query: 290 PIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDF-VKILNHALDYGYGPHPKSISSGSVD 348
           P + LP+  N  ++VW  +PK      +MN +    +IL H         P  +    V 
Sbjct: 210 PRSFLPLCGNQGSLVWYDSPKRIKQLSAMNPEQLRSEILRH--------FPAELGEIKVL 261

Query: 349 MFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHP 408
                                           FPL+ +HA  YV    VL+GDAAHT++P
Sbjct: 262 QHG----------------------------SFPLTRRHAQQYVKNNCVLLGDAAHTINP 293

Query: 409 LAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKA 468
           LAGQGVNLGF D   L     +       +   +   +YE  R+P N++M   +D F K 
Sbjct: 294 LAGQGVNLGFKDVDVLLAETEK-----QGVLNDASFARYERRRRPDNLLMQTGMDLFYKT 348

Query: 469 YSVDFGPLNILRAAAFHGAQYISPLKRNIISYASG 503
           +S    PL  +R AA   A+   PLK  ++ YA G
Sbjct: 349 FSNSLTPLKFVRNAALKLAENSGPLKTQVLKYALG 383

Length = 384

>gnl|CDD|180935 PRK07333, PRK07333, 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

 Score =  229 bits (585), Expect = 5e-70
 Identities = 140/460 (30%), Positives = 208/460 (45%), Gaps = 82/460 (17%)

Query: 55  QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVT 114
           Q DV + GGG VG+ALA +L       HL V ++D+ PA   S         DPR S + 
Sbjct: 1   QCDVVIAGGGYVGLALAVALKQA--APHLPVTVVDAAPAGAWSR--------DPRASAIA 50

Query: 115 PATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNAR--------DVNK-EILG 165
            A     + +G W  +        D M + D      T    R        +V   E   
Sbjct: 51  AAARRMLEALGVWDEIAPEAQPITD-MVITD----SRTSDPVRPVFLTFEGEVEPGEPFA 105

Query: 166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLA 225
            +VEN+VL ++L               +    + L  ++S    ++     T+       
Sbjct: 106 HMVENRVLINALRK------------RAEALGIDLREATSVTDFETRDEGVTV------- 146

Query: 226 KLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKE-NYCAWQR 284
              LSDG+ L A+L+V ADG +S++RELAG KT GW Y Q+ I+CTVEH +     A + 
Sbjct: 147 --TLSDGSVLEARLLVAADGARSKLRELAGIKTVGWDYGQSGIVCTVEHERPHGGRAEEH 204

Query: 285 FLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISS 344
           FLPAGP A+LP+  N S++VWT    DA   + +  DD   +    L+  +G        
Sbjct: 205 FLPAGPFAILPLKGNRSSLVWTERTADAE--RLVALDDL--VFEAELEQRFGHR------ 254

Query: 345 GSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAH 404
                         L            +K+  +R  FPL L  A ++V+ R  L+GDAAH
Sbjct: 255 --------------LGE----------LKVLGKRRAFPLGLTLARSFVAPRFALVGDAAH 290

Query: 405 TVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVL-D 463
            +HP+AGQG+NLG  D + L+ ++ E   +G DIG   +L++Y+  R+  + V M V  D
Sbjct: 291 GIHPIAGQGLNLGLKDVAALAEVVVEAARLGLDIGSLDVLERYQRWRRF-DTVRMGVTTD 349

Query: 464 GFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASG 503
              + +S D   L  +R         +  LK   I  A+G
Sbjct: 350 VLNRLFSNDSTLLRSVRDIGLGLVDRLPKLKSFFIRQAAG 389

Length = 403

>gnl|CDD|181057 PRK07608, PRK07608, ubiquinone biosynthesis hydroxylase family protein; Provisional

 Score =  221 bits (566), Expect = 2e-67
 Identities = 126/459 (27%), Positives = 196/459 (42%), Gaps = 85/459 (18%)

Query: 55  QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPP--DPRVST 112
           ++DV VVGGG+VG +LA +LA       L VA++             +      D RV  
Sbjct: 5   KFDVVVVGGGLVGASLALALAQ----SGLRVALLAPRAP-------PRPADDAWDSRVYA 53

Query: 113 VTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKV 172
           ++P++ +F + +G WQ +   R A    M+V+         ++A       L  +VE+ +
Sbjct: 54  ISPSSQAFLERLGVWQALDAARLAPVYDMRVFGDAH-ARLHFSAYQAGVPQLAWIVESSL 112

Query: 173 LHSSLLSCMQNTEFQK--TIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS 230
           +  +L        FQ   T +P+R   + + P +                    A L L+
Sbjct: 113 IERAL---WAALRFQPNLTWFPARAQGLEVDPDA--------------------ATLTLA 149

Query: 231 DGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAII----CTVEHNKENYCAWQRFL 286
           DG  L A LVVGADG  S VR  AG K     Y Q  ++        H      A+Q F 
Sbjct: 150 DGQVLRADLVVGADGAHSWVRSQAGIKAERRPYRQTGVVANFKAERPHRGT---AYQWFR 206

Query: 287 PAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGS 346
             G +ALLP+ D   ++VW+     A +  +++ +     +  A                
Sbjct: 207 DDGILALLPLPDGHVSMVWSARTAHADELLALSPEALAARVERA---------------- 250

Query: 347 VDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTV 406
                       L   EC   P            FPL L+  +  V+ RV L+GDAAH +
Sbjct: 251 --------SGGRLGRLEC-VTPAA---------GFPLRLQRVDRLVAPRVALVGDAAHLI 292

Query: 407 HPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQ 466
           HPLAGQG+NLG  D + L+ ++A G     D+G+  LL++YE  R+   + +    DG Q
Sbjct: 293 HPLAGQGMNLGLRDVAALADVLA-GREPFRDLGDLRLLRRYERARREDILALQVATDGLQ 351

Query: 467 KAYSVDFGPLNILRAA--AFHGAQYISPLKRNIISYASG 503
           + +++       LR A  A  GA     +KR ++ +A G
Sbjct: 352 RLFALPGPLARWLRNAGMALVGAL--PLVKRWLVRHALG 388

Length = 388

>gnl|CDD|236139 PRK08013, PRK08013, oxidoreductase; Provisional

 Score =  221 bits (566), Expect = 3e-67
 Identities = 133/430 (30%), Positives = 201/430 (46%), Gaps = 90/430 (20%)

Query: 56  YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTP 115
            DV + GGGMVG+A+AC L        L VA+++       +     + PP  RVS +  
Sbjct: 4   VDVVIAGGGMVGLAVACGLQG----SGLRVAVLEQRVPEPLAA----DAPPALRVSAINA 55

Query: 116 ATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHS 175
           A+      +G WQ +   R + +  M+VWD    G   ++ + +    LG ++EN V+H 
Sbjct: 56  ASEKLLTRLGVWQDILARRASCYHGMEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHY 115

Query: 176 SLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL---------AK 226
           +L        +QK               SS I         TL     L         A 
Sbjct: 116 AL--------WQKA------------QQSSDI---------TLLAPAELQQVAWGENEAF 146

Query: 227 LDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK-ENYCAWQRF 285
           L L DG+ L A+LVVGADG  S +R  A    T W Y  +A++ T+   +  +  A Q F
Sbjct: 147 LTLKDGSMLTARLVVGADGANSWLRNKADIPLTFWDYQHHALVATIRTEEPHDAVARQVF 206

Query: 286 LPAGPIALLPIGD-NFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISS 344
              G +A LP+ D +  +IVW+++P++A   +   E++F + L  A D   G        
Sbjct: 207 HGDGILAFLPLSDPHLCSIVWSLSPEEAQRMQQAPEEEFNRALAIAFDNRLG-------- 258

Query: 345 GSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAH 404
                              C        +L SER VFPL+ ++A  + + R+ L+GDAAH
Sbjct: 259 ------------------LC--------ELESERQVFPLTGRYARQFAAHRLALVGDAAH 292

Query: 405 TVHPLAGQGVNLGFGDA----STLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMA 460
           T+HPLAGQGVNLGF DA    + L R+  +    G DIG+   L++YE  RK +  +M+A
Sbjct: 293 TIHPLAGQGVNLGFMDAAELIAELRRLHRQ----GKDIGQHLYLRRYERSRKHSAALMLA 348

Query: 461 VLDGFQKAYS 470
            + GF+  ++
Sbjct: 349 GMQGFRDLFA 358

Length = 400

>gnl|CDD|181552 PRK08773, PRK08773, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

 Score =  215 bits (548), Expect = 8e-65
 Identities = 139/448 (31%), Positives = 202/448 (45%), Gaps = 65/448 (14%)

Query: 57  DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPA 116
           D  +VGGG+VG A A +LA       LSVA+++     G+     + D PD RV      
Sbjct: 8   DAVIVGGGVVGAACALALAD----AGLSVALVE-----GREPPRWQADQPDLRVYAFAAD 58

Query: 117 TISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSS 176
             +    +G W  V+  R   + +M+VWD  G G   ++A  + +E LG +VEN +L   
Sbjct: 59  NAALLDRLGVWPAVRAARAQPYRRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDR 118

Query: 177 LLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLY 236
           L + +     Q    P+R+   AL   +  +                  +L L DG  L 
Sbjct: 119 LWAALHAAGVQLHC-PARVV--ALEQDADRV------------------RLRLDDGRRLE 157

Query: 237 AKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYC-AWQRFLPAGPIALLP 295
           A L + ADG  S +RELAG   +   Y+Q  ++  V+    +   AWQRFLP GP+ALLP
Sbjct: 158 AALAIAADGAASTLRELAGLPVSRHDYAQRGVVAFVDTEHPHQATAWQRFLPTGPLALLP 217

Query: 296 IGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRG 355
             D  S+IVWT+   +A    +++E  F + L  A     G                   
Sbjct: 218 FADGRSSIVWTLPDAEAERVLALDEAAFSRELTQAFAARLGE------------------ 259

Query: 356 DATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVN 415
                           V++AS R  FPL  +    YVS RV+ +GDAAH VHPLAGQGVN
Sbjct: 260 ----------------VRVASPRTAFPLRRQLVQQYVSGRVLTLGDAAHVVHPLAGQGVN 303

Query: 416 LGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGP 475
           LG  D + L +++ +  A  AD      L+++   R+  N V     D   + +S D   
Sbjct: 304 LGLRDVAALQQLVRQAHARRADWAAPHRLQRWARTRRSDNTVAAYGFDAINRVFSNDEMH 363

Query: 476 LNILRAAAFHGAQYISPLKRNIISYASG 503
           L +LR +    A  + PL   +   ASG
Sbjct: 364 LTLLRGSVLGLAGKLPPLVDALWKRASG 391

Length = 392

>gnl|CDD|235584 PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

 Score =  202 bits (516), Expect = 6e-60
 Identities = 119/458 (25%), Positives = 189/458 (41%), Gaps = 94/458 (20%)

Query: 55  QYDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPALGKSNFIKKEDPP--DPRVS 111
           + DV +VGGGM G  LA +L+   L+   L VA+I++            +  P  D R  
Sbjct: 3   RMDVIIVGGGMAGATLALALSR--LSHGGLPVALIEAFAPES-------DAHPGFDARAI 53

Query: 112 TVTPATISFFKEIGAWQYVQQH----RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCV 167
            +   T      +G WQ +        H     + V D    G+ + +A D     LG V
Sbjct: 54  ALAAGTCQQLARLGVWQALADCATPITH-----IHVSDRGHAGFVRLDAEDYGVPALGYV 108

Query: 168 VEN----KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGH 223
           VE     + L + L      T       P+R+ ++     S  ++               
Sbjct: 109 VELHDVGQRLFALLDKAPGVTLHC----PARVANVERTQGSVRVT--------------- 149

Query: 224 LAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVE----HNKENY 279
                L DG +L  +L+V ADG  S +RE  G       Y Q A+I  V     H     
Sbjct: 150 -----LDDGETLTGRLLVAADGSHSALREALGIDWQQHPYEQVAVIANVTTSEAHQG--- 201

Query: 280 CAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHP 339
            A++RF   GP+ALLP+ D   ++VW    +DA +  S ++  F+  L  A         
Sbjct: 202 RAFERFTEHGPLALLPMSDGRCSLVWCHPLEDAEEVLSWSDAQFLAELQQA--------- 252

Query: 340 KSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLI 399
                     F W  G              R+   A +R  +PL+L  A   +S R+ L+
Sbjct: 253 ----------FGWRLG--------------RITH-AGKRSAYPLALVTAAQQISHRLALV 287

Query: 400 GDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKP--ANIV 457
           G+AA T+HP+AGQG NLG  D  +L+  + + +A G DIG+ ++L++Y+  R+      +
Sbjct: 288 GNAAQTLHPIAGQGFNLGLRDVMSLAETLTQALARGEDIGDYAVLQRYQQRRQQDREATI 347

Query: 458 MMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKR 495
                DG  + ++  + PL + R         + P + 
Sbjct: 348 GFT--DGLVRLFANRWAPLVVGRNLGLMAMDLLPPARD 383

Length = 395

>gnl|CDD|236385 PRK09126, PRK09126, hypothetical protein; Provisional

 Score =  162 bits (412), Expect = 5e-45
 Identities = 109/452 (24%), Positives = 182/452 (40%), Gaps = 70/452 (15%)

Query: 56  YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP--ALGKSNFIKKEDPP-DPRVST 112
            D+ VVG G  G++ A SLA       L V +I+  P  AL         DP  D R   
Sbjct: 4   SDIVVVGAGPAGLSFARSLAG----SGLKVTLIERQPLAAL--------ADPAFDGREIA 51

Query: 113 VTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKV 172
           +T A+    + +GAW  + +   +     +V +        ++AR    + LG +V N +
Sbjct: 52  LTHASREILQRLGAWDRIPEDEISPLRDAKVLNGRSPFALTFDARGRGADALGYLVPNHL 111

Query: 173 LHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG 232
           +  +    +   +            + LL  +   +V +             A++ L++G
Sbjct: 112 IRRAAYEAVSQQD-----------GIELLTGTRVTAVRTDDDG---------AQVTLANG 151

Query: 233 TSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENY-CAWQRFLPAGPI 291
             L A+L+V AD   S  R   G       + +  ++C + H   ++  AW+ F     +
Sbjct: 152 RRLTARLLVAADSRFSATRRQLGIGADMHDFGRTMLVCRMRHELPHHHTAWEWFGYGQTL 211

Query: 292 ALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFS 351
           ALLP+  + S++V T+ P       +++ + F                            
Sbjct: 212 ALLPLNGHLSSLVLTLPPDQIEALLALDPEAF----AAE--------------------- 246

Query: 352 WFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAG 411
                        F+     ++L S R  +PL   +A+ +V+KR  LIGDAA  +HP+  
Sbjct: 247 ---------VTARFKGRLGAMRLVSSRHAYPLVAVYAHRFVAKRFALIGDAAVGMHPVTA 297

Query: 412 QGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSV 471
            G NLG      L+R+I      G DIG ASLL++YE + + A   +    +     Y+ 
Sbjct: 298 HGFNLGLKGQDILARLILAAARRGQDIGAASLLERYERKHRLATRPLYHATNAIAALYTD 357

Query: 472 DFGPLNILRAAAFHGAQYISPLKRNIISYASG 503
           D  P  +LR A    A    PLK+ I    +G
Sbjct: 358 DRPPARLLRRAVLRAANRFPPLKQAIAKQLTG 389

Length = 392

>gnl|CDD|181001 PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

 Score =  159 bits (405), Expect = 5e-44
 Identities = 112/451 (24%), Positives = 185/451 (41%), Gaps = 83/451 (18%)

Query: 52  NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVS 111
             +  D+AV+GGG  G+A A +LA        SVA++   P              D R +
Sbjct: 4   EKEHTDIAVIGGGPAGLAAAIALAR----AGASVALVAPEPP-----------YADLRTT 48

Query: 112 TVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTG----LGYTKYNARDVNKEILGCV 167
            +   +I F + +G W  +  H  A    M++ D TG        ++ A ++ ++  G  
Sbjct: 49  ALLGPSIRFLERLGLWARLAPHA-APLQSMRIVDATGRLIRAPEVRFRAAEIGEDAFGYN 107

Query: 168 VENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALL--PSSSSISVDSTPSATTLFTKGHLA 225
           + N +L+ +L               +R+  +  +      + SV                
Sbjct: 108 IPNWLLNRALE--------------ARVAELPNITRFGDEAESVRPREDE---------V 144

Query: 226 KLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRF 285
            + L+DGT+L A+LVVGADG  S VRE AG     WSY Q A++    H++ +      F
Sbjct: 145 TVTLADGTTLSARLVVGADGRNSPVREAAGIGVRTWSYPQKALVLNFTHSRPHQNVSTEF 204

Query: 286 -LPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISS 344
               GP   +P+    S++VW + P +A    ++++      +   +    G        
Sbjct: 205 HTEGGPFTQVPLPGRRSSLVWVVRPAEAERLLALSDAALSAAIEERMQSMLGK------- 257

Query: 345 GSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAH 404
                                      + L   R  +PLS + A+ + + R  L+G+AAH
Sbjct: 258 ---------------------------LTLEPGRQAWPLSGQVAHRFAAGRTALVGEAAH 290

Query: 405 TVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDG 464
              P+  QG+NLG  D +TL  I+        D G A++L  Y+  R+P  +   A +D 
Sbjct: 291 VFPPIGAQGLNLGLRDVATLVEIVE---DRPEDPGSAAVLAAYDRARRPDILSRTASVDL 347

Query: 465 FQKAYSVDFGPLNILRAAAFHGAQYISPLKR 495
             ++   DF P+  LRAA  H      PL+R
Sbjct: 348 LNRSLLSDFLPVQDLRAAGLHLLYSFGPLRR 378

Length = 388

>gnl|CDD|235905 PRK06996, PRK06996, hypothetical protein; Provisional

 Score =  140 bits (355), Expect = 5e-37
 Identities = 120/447 (26%), Positives = 185/447 (41%), Gaps = 81/447 (18%)

Query: 56  YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTP 115
           +D+A+VG G VG+ALA  LA    T+ LS+A+ID+      +N        DPR   ++ 
Sbjct: 12  FDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASAN--------DPRAIALSH 63

Query: 116 ATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHS 175
            +    + +GAW           + + V      G T  +  D +   LG VV    L +
Sbjct: 64  GSRVLLETLGAWP----ADATPIEHIHVSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVA 119

Query: 176 SLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT-S 234
           +L   ++ T  +   + +  T                P+       G    L    G  +
Sbjct: 120 ALARAVRGTPVR---WLTSTT-------------AHAPAQDA---DGVTLALGTPQGART 160

Query: 235 LYAKLVVGADGGK-SRVRELAGFKTTGWSYSQNAIICTVEHN--KENYCAWQRFLPAGPI 291
           L A++ V A+GG     +  AG       Y Q AI+ TV  +  +  + AW+RF   GP+
Sbjct: 161 LRARIAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVSAPRPGW-AWERFTHEGPL 219

Query: 292 ALLPIGD----NFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSV 347
           ALLP+G     +++ +VW   P +A+   ++ +D F+  L  A                 
Sbjct: 220 ALLPLGGPRQADYA-LVWCCAPDEAARRAALPDDAFLAELGAA----------------- 261

Query: 348 DMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVH 407
             F    G  T  A                R  FPL L  A   V+ R+  +G+AA T+H
Sbjct: 262 --FGTRMGRFTRIAG---------------RHAFPLGLNAARTLVNGRIAAVGNAAQTLH 304

Query: 408 PLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQK 467
           P+AGQG+NLG  DA TL+       A+         L  + A R     V +   D   +
Sbjct: 305 PVAGQGLNLGLRDAHTLAD------ALSDHGATPLALATFAARRALDRRVTIGATDLLPR 358

Query: 468 AYSVDFGPLNILRAAAFHGAQYISPLK 494
            ++VD  PL  LR AA    +++ PLK
Sbjct: 359 LFTVDSRPLAHLRGAALTALEFVPPLK 385

Length = 398

>gnl|CDD|168629 PRK06617, PRK06617, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

 Score =  118 bits (297), Expect = 3e-29
 Identities = 116/453 (25%), Positives = 180/453 (39%), Gaps = 85/453 (18%)

Query: 57  DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPA 116
           +  ++G G+ GM  A S A     K +   I +S  ++    F K     D R + +TP 
Sbjct: 3   NTVILGCGLSGMLTALSFAQ----KGIKTTIFESK-SVKSPEFFK-----DIRTTALTPH 52

Query: 117 TISFFKEIGAWQYVQQHRHAYFDKMQ-VWDYTGLGYTKYNARDVNKEILGCVVENKVLHS 175
           + +F   I  W+ +++    +  +MQ ++          + R+    +LG VV+N     
Sbjct: 53  SKNFLFSIDIWEELEK----FVAEMQDIYVVDNKASEILDLRNDADAVLGYVVKNSDFKK 108

Query: 176 SLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSL 235
            LLS + N      I  ++   +      S I  D                        +
Sbjct: 109 ILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK---------------------QI 147

Query: 236 YAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK--ENYCAWQRFLPAGPIAL 293
              L++  DG  S+VR           Y Q A+   ++H K  EN CA + FLP GP AL
Sbjct: 148 KCNLLIICDGANSKVRSHYFANEIEKPY-QTALTFNIKHEKPHEN-CAMEHFLPLGPFAL 205

Query: 294 LPIGDNF-SNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSW 352
           LP+ D + S+++W           S + D    I+N  ++              V   + 
Sbjct: 206 LPLKDQYASSVIW-----------STSSDQAALIVNLPVE-------------EVRFLTQ 241

Query: 353 FRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQ 412
                +L            + + SE   FPL  + AN Y   R+VLI D AHTVHPLAGQ
Sbjct: 242 RNAGNSLGK----------ITIDSEISSFPLKARIANRYFHNRIVLIADTAHTVHPLAGQ 291

Query: 413 GVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVD 472
           G+N G  D   LS I++              L++Y+  R+  N +M  + D     +S  
Sbjct: 292 GLNQGIKDIEILSMIVSNN----------GTLQEYQKLRQEDNFIMYKLTDELNNIFSNY 341

Query: 473 FGPLNILRAAAFHGAQYISPLKRNIISYASGEQ 505
              L  LR   F       P+K  I SYA G++
Sbjct: 342 SKNLRCLRQIGFKVINNFKPIKNLITSYAMGKR 374

Length = 374

>gnl|CDD|216530 pfam01494, FAD_binding_3, FAD binding domain

 Score = 80.8 bits (200), Expect = 1e-16
 Identities = 87/437 (19%), Positives = 133/437 (30%), Gaps = 120/437 (27%)

Query: 56  YDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPALGKSNFIKKEDPPDPRVSTVT 114
            DV +VGGG  G+ LA     + L +  + V +++ +                PR   + 
Sbjct: 2   TDVLIVGGGPAGLMLA-----LLLARAGVRVVLVERHA----------TTSVLPRAGGLN 46

Query: 115 PATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLH 174
             T+   ++ G    +                           +            +   
Sbjct: 47  QRTMELLRQAGLEDRI--LAEGA------------------PHEGMGLAFYNTSRRRADL 86

Query: 175 SSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVD---STPSATTLFTKGHLAK--LDL 229
             L S  +      T+YP       L   + +        T   +       +     D 
Sbjct: 87  DFLTSPPR-----VTVYPQTELEPILREHAEARGAQVRFGTEVLSLEQDGDGVTAVVRDR 141

Query: 230 SDGT--SLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLP 287
            DG   ++ AK +VG DGG+S VR+  G +  G+                         P
Sbjct: 142 RDGEEYTVRAKYLVGCDGGRSPVRKQLGIEFEGFEGV----------------------P 179

Query: 288 AGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSV 347
            G + +L                DA D     E  FV  L  A      PH +    G  
Sbjct: 180 FGSLDVLF---------------DAPDLSDPVERAFVHYLIGA------PHSRGFMVGPW 218

Query: 348 D---------MFSWFRGDATLSAK----ECFE------VPPRVVKLASERMVFPLSLKHA 388
                        W         +    E  +                 + ++ +  + A
Sbjct: 219 RSAGRSRYYVQVPWDPEVEERPEEFTDEEAKQRLRSAVGIDLADVEILWKSIWGVRSRVA 278

Query: 389 NNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEA--SLLKK 446
             Y   RV L GDAAH   P  GQG+N G  DA  L+  +A  +      G A  +LL  
Sbjct: 279 TRYRKGRVFLAGDAAHIHPPTGGQGLNTGIQDAFNLAWKLAAVLR-----GTAGEALLDT 333

Query: 447 YEAERKPANIVMMAVLD 463
           YEAER+P   V  AV+D
Sbjct: 334 YEAERRP---VAWAVVD 347

This domain is involved in FAD binding in a number of enzymes. Length = 349

>gnl|CDD|235870 PRK06834, PRK06834, hypothetical protein; Provisional

 Score = 78.1 bits (193), Expect = 2e-15
 Identities = 69/242 (28%), Positives = 97/242 (40%), Gaps = 70/242 (28%)

Query: 227 LDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVE----------HNK 276
           ++LSDG +L A+ +VG DGG+S VR+ AG    GW  + + +I  VE           + 
Sbjct: 135 VELSDGRTLRAQYLVGCDGGRSLVRKAAGIDFPGWDPTTSYLIAEVEMTEEPEWGVHRDA 194

Query: 277 ENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHAL--DYG 334
               A+ R    GP+           ++ T     A+   ++++      L  AL   YG
Sbjct: 195 LGIHAFGRLEDEGPV----------RVMVTEKQVGATGEPTLDD------LREALIAVYG 238

Query: 335 --YGPH-PKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNY 391
             YG H P  IS      F+    D                             + A +Y
Sbjct: 239 TDYGIHSPTWISR-----FT----DMA---------------------------RQAASY 262

Query: 392 VSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAER 451
              RV+L GDAAH   P+ GQG+N G  DA  L   +A+   V       SLL  Y AER
Sbjct: 263 RDGRVLLAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQ---VVKGTSPESLLDTYHAER 319

Query: 452 KP 453
            P
Sbjct: 320 HP 321

Length = 488

>gnl|CDD|235704 PRK06126, PRK06126, hypothetical protein; Provisional

 Score = 73.9 bits (182), Expect = 5e-14
 Identities = 95/427 (22%), Positives = 141/427 (33%), Gaps = 106/427 (24%)

Query: 57  DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPA 116
            V +VGGG VG+ALA  L      + +   +++                 +P+ +T +  
Sbjct: 9   PVLIVGGGPVGLALALDLGR----RGVDSILVERKD----------GTAFNPKANTTSAR 54

Query: 117 TISFFKEIGAWQYVQQHRHAYFDKMQVWDY-TGLGY-TKYNARDVNKEILGCVVE----- 169
           ++  F+         + R A        DY T + Y T+    ++ +  L    E     
Sbjct: 55  SMEHFRR---LGIADEVRSAGLPV----DYPTDIAYFTRLTGYELARFRLPSAREAITPV 107

Query: 170 -----------------NKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST 212
                             K L   LL            Y  RLT                
Sbjct: 108 GGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDF----------EQDA 157

Query: 213 PSATTLFTKGHLAKLDLSDGTSL--YAKLVVGADGGKSRVRELAGFK---TTGWSYSQNA 267
              T           DL  G SL   A  +VG DG +S VR   G     T+G     + 
Sbjct: 158 DGVTATVE-------DLDGGESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDLSI 210

Query: 268 IICTVEHNKENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMN-EDDFVKI 326
            I                    P     +G + + + W  NP       +++  D++   
Sbjct: 211 YIRA------------------PGLAALVGHDPAWMYWLFNPDRRGVLVAIDGRDEW--- 249

Query: 327 LNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLK 386
           L H L  G        +   VD  ++ R    +     +EV   V       +       
Sbjct: 250 LFHQL-RGGEDEF---TIDDVDARAFVR--RGVGEDIDYEVLSVVPWTGRRLV------- 296

Query: 387 HANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKK 446
            A++Y   RV L GDAAH   P  G G+N G GDA  L+  +A   AV       +LL  
Sbjct: 297 -ADSYRRGRVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLA---AVLNGWAGPALLDS 352

Query: 447 YEAERKP 453
           YEAER+P
Sbjct: 353 YEAERRP 359

Length = 545

>gnl|CDD|235728 PRK06184, PRK06184, hypothetical protein; Provisional

 Score = 63.1 bits (154), Expect = 1e-10
 Identities = 68/244 (27%), Positives = 96/244 (39%), Gaps = 49/244 (20%)

Query: 225 AKLDLSDGTS-LYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICT-VEHNKENYCAW 282
           A++    G   + A+ +VGADGG+S VR+  G    G +   + ++   V     +  AW
Sbjct: 144 ARVAGPAGEETVRARYLVGADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTGLDRDAW 203

Query: 283 QRFLP--AGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPK 340
            ++     G IAL P+    +++     P        ++ D    +L             
Sbjct: 204 HQWPDGDMGMIALCPLPG--TDLFQIQAPLPPGGEPDLSADGLTALLAER------TGRT 255

Query: 341 SISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIG 400
            I   SV   S FR                       R+        A+ Y   RV L G
Sbjct: 256 DIRLHSVTWASAFR--------------MNA------RL--------ADRYRVGRVFLAG 287

Query: 401 DAAHTVHPLAG-QGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMM 459
           DAAH VHP AG QG+N    DA  L   +A  +A GA     +LL  YE ER+P   V  
Sbjct: 288 DAAH-VHPPAGGQGLNTSVQDAYNLGWKLAAVLA-GAP---EALLDTYEEERRP---VAA 339

Query: 460 AVLD 463
           AVL 
Sbjct: 340 AVLG 343

Length = 502

>gnl|CDD|136171 PRK07045, PRK07045, putative monooxygenase; Reviewed

 Score = 61.5 bits (149), Expect = 3e-10
 Identities = 56/243 (23%), Positives = 93/243 (38%), Gaps = 44/243 (18%)

Query: 221 KGHLAKLDLSDGTSLYAKLVVGADGGKSRV-RELAGFKTTGWSYSQNAII-------CTV 272
            G +  + LSDG  +   ++VGADG +S +  ++         Y+               
Sbjct: 138 DGTVTSVTLSDGERVAPTVLVGADGARSMIRDDVLRMPAERVPYATPMAFGTIALTDSVR 197

Query: 273 EHNKENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALD 332
           E N+    + Q     G     PIGD  + +V +  P D                     
Sbjct: 198 ECNRLYVDSNQ-----GLAYFYPIGDQATRLVVSF-PADEMQ-----------------G 234

Query: 333 YGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYV 392
           Y        +    +   + F GD +  A          +   +   + PL   + + Y 
Sbjct: 235 YLADTTRTKL----LARLNEFVGDESADAMA-------AIGAGTAFPLIPLGRMNLDRYH 283

Query: 393 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERK 452
            + VVL+GDAAH++HP+ GQG+NL   DA  L   +   + +   I  A  L+++E  R+
Sbjct: 284 KRNVVLLGDAAHSIHPITGQGMNLAIEDAGELGACL--DLHLSGQIALADALERFERIRR 341

Query: 453 PAN 455
           P N
Sbjct: 342 PVN 344

Length = 388

>gnl|CDD|235727 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

 Score = 58.8 bits (143), Expect = 3e-09
 Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 3/66 (4%)

Query: 388 ANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKY 447
           A+ + S RV+L GDAAH + P AGQG+N G  DA+ L+  +A  +   A     +LL  Y
Sbjct: 280 ADRWRSGRVLLAGDAAHLMPPFAGQGMNSGIRDAANLAWKLAAVLRGRAG---DALLDTY 336

Query: 448 EAERKP 453
           E ER+P
Sbjct: 337 EQERRP 342

Length = 500

>gnl|CDD|236199 PRK08244, PRK08244, hypothetical protein; Provisional

 Score = 57.1 bits (138), Expect = 1e-08
 Identities = 95/417 (22%), Positives = 148/417 (35%), Gaps = 106/417 (25%)

Query: 56  YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTP 115
           Y+V ++GGG VG+ LA  LA   L   +   +I+            KE  P  +  T+ P
Sbjct: 3   YEVIIIGGGPVGLMLASELA---LAG-VKTCVIER----------LKETVPYSKALTLHP 48

Query: 116 ATISFFKEIGAW-QYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLH 174
            T+      G   +++++ R     K+    + GL                   + ++  
Sbjct: 49  RTLEILDMRGLLERFLEKGR-----KLPSGHFAGL-------------------DTRLDF 84

Query: 175 SSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL----S 230
           S+L +    T F     P   T   L   + S+ V+    A  L  +     +++     
Sbjct: 85  SALDTSSNYTLF----LPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGP 140

Query: 231 DGTS-LYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTV--EHNKENYCAWQRFLP 287
           DG   L +  VVGADG  S VR+ AG    G   +  A++  V  +    +         
Sbjct: 141 DGLRTLTSSYVVGADGAGSIVRKQAGIAFPGTDATFTAMLGDVVLKDPPPSS-VLSLCTR 199

Query: 288 AGPIALLPIGDNFSNIVW-----TMNPKDASDCKSMNEDDFVKILNHAL--DYGYGPHPK 340
            G + ++P+      ++         PKD    + +  ++    L      D+G      
Sbjct: 200 EGGVMIVPLSGGIYRVLIIDPERPQVPKD----EPVTLEELKTSLIRICGTDFGL----- 250

Query: 341 SISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIG 400
                     S F G+AT  A+                            Y S R+ L G
Sbjct: 251 ----NDPVWMSRF-GNATRQAER---------------------------YRSGRIFLAG 278

Query: 401 DAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEAS--LLKKYEAERKPAN 455
           DAAH   P  GQG+N+G  DA  L   +A  I      G A   LL  Y AER P  
Sbjct: 279 DAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIK-----GWAPDWLLDSYHAERHPVG 330

Length = 493

>gnl|CDD|235729 PRK06185, PRK06185, hypothetical protein; Provisional

 Score = 55.3 bits (134), Expect = 3e-08
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 396 VVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPA 454
           ++ IGDAAH + P+ G G+NL   DA   + I+AE +  G        L   +  R+  
Sbjct: 286 LLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPLRRGR--VSDRDLAAVQRRREFP 342

Length = 407

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 49/282 (17%), Positives = 81/282 (28%), Gaps = 59/282 (20%)

Query: 235 LYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQR---FLPAGPI 291
           + AK+V+ ADG  S +    G K                   E+Y    +    +P    
Sbjct: 139 VRAKVVIDADGVNSALARKLGLKD---------------RKPEDYAIGVKEVIEVPDDGD 183

Query: 292 ALLPIGDNFSNIV---WTMNPKDASD----CKSMNEDDFVKILNHALDYGYGPHPKSISS 344
               +             + P            + +D  +      L+  +  HP     
Sbjct: 184 VEEFLYGPLDVGPGGYGWIFPLGDGHANVGIGVLLDDPSLSPFLELLER-FKEHP----- 237

Query: 345 GSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAH 404
                         L   +  E     +         P     +   V   V+L+GDAA 
Sbjct: 238 ---------AIRKLLLGGKILEYAAGGI---------PEGGPASRPLVGDGVLLVGDAAG 279

Query: 405 TVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIV--MMAVL 462
            V+PL G+G+      A    ++ AE IA  A  G    L +YE   +  ++    +  L
Sbjct: 280 FVNPLTGEGIRY----AIKSGKLAAEAIA-EALEGGEEALAEYERLLR-KSLAREDLKSL 333

Query: 463 DGFQKAYSVDFGPLNILRAAAFHGA--QYISPLKRNIISYAS 502
              +    +    L  L            I    R +I Y  
Sbjct: 334 RLLKLLLRLLDRTLPALIKLLADKDLLGLIKKYLRKLILYPL 375

Length = 396

>gnl|CDD|236203 PRK08255, PRK08255, salicylyl-CoA 5-hydroxylase; Reviewed

 Score = 53.0 bits (128), Expect = 3e-07
 Identities = 35/85 (41%), Positives = 40/85 (47%), Gaps = 16/85 (18%)

Query: 369 PRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRII 428
           PRVV    ER V      H N  V   VVL+GDAAHT H   G G  L   DA  L+R +
Sbjct: 255 PRVV---CERWV------HWNRRVP--VVLMGDAAHTAHFSIGSGTKLALEDAIELARCL 303

Query: 429 AEGIAVGADIGEASLLKKYEAERKP 453
            E      D+  A  L  YE ER+ 
Sbjct: 304 HE---HPGDLPAA--LAAYEEERRV 323

Length = 765

>gnl|CDD|132263 TIGR03219, salicylate_mono, salicylate 1-monooxygenase

 Score = 51.4 bits (123), Expect = 7e-07
 Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 391 YVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAE 450
           YV  RV LIGDAAH + P  G G   G  DA  L+R++ +      D+    LL+ Y+  
Sbjct: 297 YVHGRVALIGDAAHAMLPHQGAGAGQGLEDAYFLARLLGDTELEAGDLPA--LLEAYDDV 354

Query: 451 RKP 453
           R+P
Sbjct: 355 RRP 357

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. Length = 414

>gnl|CDD|235980 PRK07236, PRK07236, hypothetical protein; Provisional

 Score = 48.4 bits (116), Expect = 5e-06
 Identities = 28/90 (31%), Positives = 35/90 (38%), Gaps = 17/90 (18%)

Query: 371 VVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAE 430
           +  L   RM F             RV L+GDAA    P    GV     DA  L+  +A 
Sbjct: 294 IFDLEVPRMAF------------GRVALLGDAAFVARPHTAAGVAKAAADAVALAEALA- 340

Query: 431 GIAVGADIGEASLLKKYEAERKPANIVMMA 460
             A   DI  A  L  +EAER      ++A
Sbjct: 341 --AAAGDIDAA--LAAWEAERLAVGAAIVA 366

Length = 386

>gnl|CDD|236046 PRK07538, PRK07538, hypothetical protein; Provisional

 Score = 47.6 bits (114), Expect = 1e-05
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 16/70 (22%)

Query: 395 RVVLIGDAAHTVHPL----AGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAE 450
           RV L+GDAAH ++P+    A Q +     DA    R +A+ +A   D   A  L  YEAE
Sbjct: 298 RVTLLGDAAHPMYPVGSNGASQAIL----DA----RALADALAAHGDPEAA--LAAYEAE 347

Query: 451 RKP--ANIVM 458
           R+P  A IV+
Sbjct: 348 RRPATAQIVL 357

Length = 413

>gnl|CDD|235955 PRK07190, PRK07190, hypothetical protein; Provisional

 Score = 46.0 bits (109), Expect = 4e-05
 Identities = 27/63 (42%), Positives = 34/63 (53%), Gaps = 5/63 (7%)

Query: 392 VSKRVVLIGDAAHTVHPL-AGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAE 450
           +  R+ L GDA H +H +  GQG+N G  DA  L   +   I  GA      LL+ YEAE
Sbjct: 273 IQDRIFLAGDACH-IHSVNGGQGLNTGLADAFNLIWKLNMVIHHGA---SPELLQSYEAE 328

Query: 451 RKP 453
           RKP
Sbjct: 329 RKP 331

Length = 487

>gnl|CDD|180582 PRK06475, PRK06475, salicylate hydroxylase; Provisional

 Score = 44.4 bits (105), Expect = 9e-05
 Identities = 50/235 (21%), Positives = 82/235 (34%), Gaps = 49/235 (20%)

Query: 230 SDGTSLY-AKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPA 288
           ++      A  ++  DG  S +R  AGF    +S                + AW+  L A
Sbjct: 148 TNSVETVSAAYLIACDGVWSMLRAKAGFSKARFS---------------GHIAWRTTLAA 192

Query: 289 G--PIALLPIGDNFSNIVWTMNPKD---ASDCKSMNEDDFVKILNHALDYGYGPHPKSIS 343
              P + L        +   +  K    A   K     +FV I         G +P  + 
Sbjct: 193 DALPASFLSAMPEHKAVSAWLGNKAHFIAYPVKGGKFFNFVAIT-------GGENPGEV- 244

Query: 344 SGSVDMFSWFRGDATLSAKECF-EVPPRVVKL---ASERMVFPL-SLKHANNYVSKRVVL 398
                   W +       K  + +    V+++     E   +PL  +  A      R + 
Sbjct: 245 --------WSKTGDKAHLKSIYADWNKPVLQILAAIDEWTYWPLFEMADAQFVGPDRTIF 296

Query: 399 IGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKP 453
           +GDA+H V P A QG  +   DA+ L    AE +    D      LK++++ RK 
Sbjct: 297 LGDASHAVTPFAAQGAAMAIEDAAAL----AEALDSD-DQSAG--LKRFDSVRKE 344

Length = 400

>gnl|CDD|240384 PTZ00367, PTZ00367, squalene epoxidase; Provisional

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 42/198 (21%), Positives = 63/198 (31%), Gaps = 36/198 (18%)

Query: 237 AKLVVGADGGKSRVRELAGFKTTGWSYSQNAI---ICTVEHNKENYCAWQRFLPAGPIAL 293
           A LVV  DGG S+ +      T       + +   +  V   KE +         GPI  
Sbjct: 208 APLVVMCDGGMSKFKSRYQHYTPASENHSHFVGLVLKNVRLPKEQHGT-VFLGKTGPILS 266

Query: 294 LPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPH-PKSISSGSVDMFSW 352
             + DN   ++   N       +  +E          L     PH P+++          
Sbjct: 267 YRLDDNELRVLVDYNKPTLPSLEEQSE---------WLIEDVAPHLPENM---------- 307

Query: 353 FRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQ 412
                    +E F    R  K        P +         K  V IGD A+  HPL G 
Sbjct: 308 ---------RESF---IRASKDTKRIRSMPNARYPPAFPSIKGYVGIGDHANQRHPLTGG 355

Query: 413 GVNLGFGDASTLSRIIAE 430
           G+   F D   L++ +  
Sbjct: 356 GMTCCFSDCIRLAKSLTG 373

Length = 567

>gnl|CDD|233689 TIGR02023, BchP-ChlP, geranylgeranyl reductase

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 4/88 (4%)

Query: 382 PLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEA 441
           P+ +K    +   R +L+GDAA  V P +G+G+      A    ++ A+ IA     G+A
Sbjct: 252 PIPMKPRPRWDFGRAMLVGDAAGLVTPASGEGIYF----AMKSGQMAAQAIAEYLQNGDA 307

Query: 442 SLLKKYEAERKPANIVMMAVLDGFQKAY 469
           + L+ YE +          VL   Q  Y
Sbjct: 308 TDLRHYERKFMKLYGTTFRVLRVLQMVY 335

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ) [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 388

>gnl|CDD|168661 PRK06753, PRK06753, hypothetical protein; Provisional

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 10/88 (11%)

Query: 369 PRVVKLASERMVFP---LSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLS 425
             ++   SE  +       LK   ++V  R+VL+GDAAH   P  GQG      DA  L+
Sbjct: 242 REILDKQSETGILHHDIYDLKPLKSFVYGRIVLLGDAAHATTPNMGQGAGQAMEDAIVLA 301

Query: 426 RIIAEGIAVGADIGEASLLKKYEAERKP 453
             +        D  +A  L++Y+  R  
Sbjct: 302 NCLNA-----YDFEKA--LQRYDKIRVK 322

Length = 373

>gnl|CDD|131083 TIGR02028, ChlP, geranylgeranyl reductase

 Score = 41.8 bits (98), Expect = 6e-04
 Identities = 21/78 (26%), Positives = 30/78 (38%)

Query: 392 VSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAER 451
           V  RV L+GDAA  V   +G+G+          +  I E   +G  + E   L  Y    
Sbjct: 268 VVGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRLGGAVTEEGDLAGYLRRW 327

Query: 452 KPANIVMMAVLDGFQKAY 469
                    VLD  Q+ +
Sbjct: 328 DKEYRPTYRVLDLLQRVF 345

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 398

>gnl|CDD|235874 PRK06847, PRK06847, hypothetical protein; Provisional

 Score = 41.8 bits (99), Expect = 6e-04
 Identities = 24/57 (42%), Positives = 28/57 (49%), Gaps = 6/57 (10%)

Query: 395 RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAER 451
           RVVLIGDAAH   P   QG  +   DA  L    AE +A    +  A  L+ Y A R
Sbjct: 283 RVVLIGDAAHATTPHLAQGAGMAIEDAIVL----AEELARHDSLEAA--LQAYYARR 333

Length = 375

>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

 Score = 41.8 bits (98), Expect = 6e-04
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 4/43 (9%)

Query: 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95
            + DV ++GGG+VG++ A  LA     +   V ++++  A G
Sbjct: 2  SMKMDVVIIGGGIVGLSAAYYLAE----RGADVTVLEAGEAGG 40

Length = 387

>gnl|CDD|236223 PRK08294, PRK08294, phenol 2-monooxygenase; Provisional

 Score = 41.9 bits (99), Expect = 7e-04
 Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 395 RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPA 454
           RV + GDA HT    AGQG+N+   D   L   +A   AV +      LL  Y AER+  
Sbjct: 341 RVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLA---AVLSGRSPPELLHTYSAERQAI 397

Length = 634

>gnl|CDD|236198 PRK08243, PRK08243, 4-hydroxybenzoate 3-monooxygenase; Validated

 Score = 40.9 bits (97), Expect = 0.001
 Identities = 16/36 (44%), Positives = 21/36 (58%)

Query: 395 RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAE 430
           R+ L GDAAH V P   +G+NL   D   L+R + E
Sbjct: 280 RLFLAGDAAHIVPPTGAKGLNLAASDVRYLARALVE 315

Length = 392

>gnl|CDD|235729 PRK06185, PRK06185, hypothetical protein; Provisional

 Score = 39.8 bits (94), Expect = 0.003
 Identities = 15/22 (68%), Positives = 16/22 (72%)

Query: 237 AKLVVGADGGKSRVRELAGFKT 258
           A LVVGADG  SRVR LAG + 
Sbjct: 158 ADLVVGADGRHSRVRALAGLEV 179

Length = 407

>gnl|CDD|219864 pfam08491, SE, Squalene epoxidase

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 23/92 (25%), Positives = 41/92 (44%)

Query: 393 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERK 452
            K ++L+GDA +  HPL G G+ +   D   L +++     +      + +LK +   RK
Sbjct: 129 KKGLILLGDALNMRHPLTGGGMTVALNDIVLLRKLLGPLRDLSDREKVSKVLKSFHWLRK 188

Query: 453 PANIVMMAVLDGFQKAYSVDFGPLNILRAAAF 484
           P + V+  +       ++ D   L  LR   F
Sbjct: 189 PYDAVINTLSIALYSLFAADSDELKALRKGCF 220

This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway. Putative transmembrane regions are found to the protein's C-terminus. Length = 276

>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 5/42 (11%)

Query: 57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN-PALGKS 97
          DV V+GGG+VG++ A  LA     + LSV +++    A G S
Sbjct: 1  DVVVIGGGIVGLSTAYELA----RRGLSVTLLERGDLASGAS 38

This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234

>gnl|CDD|132407 TIGR03364, HpnW_proposed, FAD dependent oxidoreductase TIGR03364

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 7/47 (14%)

Query: 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP-ALGKS--NF 99
          YD+ +VG G++G+A A + A     + LSV +I+ +  A G S  NF
Sbjct: 1  YDLIIVGAGILGLAHAYAAAR----RGLSVTVIERSSRAQGASVRNF 43

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. Length = 365

>gnl|CDD|180584 PRK06481, PRK06481, fumarate reductase flavoprotein subunit; Validated

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 12/80 (15%)

Query: 24 CSSVAEKASSSNSGQPSSESEV-----KQSFTNND---DQYDVAVVGGGMVGMALACSLA 75
          C S     S S+S + S ++EV     K S+T+     D+YD+ +VG G  GM+ A    
Sbjct: 22 CGSNTTSKSDSSSSKESEKTEVTSGASKTSYTDPSELKDKYDIVIVGAGGAGMSAAIEAK 81

Query: 76 SMPLTKHLSVAIIDSNPALG 95
                 ++  I++  P  G
Sbjct: 82 D----AGMNPVILEKMPVAG 97

Length = 506

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	515
PRK08013	400	oxidoreductase; Provisional	100.0
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	100.0
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	100.0
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	100.0
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	100.0
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	100.0
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	100.0
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	100.0
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	100.0
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	100.0
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	100.0
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	100.0
PRK06996	398	hypothetical protein; Provisional	100.0
PRK09126	392	hypothetical protein; Provisional	100.0
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	100.0
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	100.0
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	100.0
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	100.0
PRK06185	407	hypothetical protein; Provisional	100.0
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	100.0
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	100.0
PRK07588	391	hypothetical protein; Provisional	100.0
PRK06834	488	hypothetical protein; Provisional	100.0
PRK08244	493	hypothetical protein; Provisional	100.0
PRK07045	388	putative monooxygenase; Reviewed	100.0
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	100.0
PRK06753	373	hypothetical protein; Provisional	100.0
PRK08132	547	FAD-dependent oxidoreductase; Provisional	100.0
PRK08294	634	phenol 2-monooxygenase; Provisional	100.0
PRK06847	375	hypothetical protein; Provisional	100.0
PRK06184	502	hypothetical protein; Provisional	100.0
PLN02985	514	squalene monooxygenase	100.0
PRK06475	400	salicylate hydroxylase; Provisional	100.0
PRK07190	487	hypothetical protein; Provisional	100.0
PRK08163	396	salicylate hydroxylase; Provisional	100.0
PRK05868	372	hypothetical protein; Validated	100.0
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	100.0
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	100.0
PTZ00367	567	squalene epoxidase; Provisional	100.0
PRK06126	545	hypothetical protein; Provisional	100.0
PRK07538	413	hypothetical protein; Provisional	100.0
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	100.0
PRK07236	386	hypothetical protein; Provisional	100.0
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	100.0
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	100.0
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	100.0
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	100.0
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	100.0
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	99.98
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.97
PRK11445	351	putative oxidoreductase; Provisional	99.97
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	99.97
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	99.97
PRK10015	429	oxidoreductase; Provisional	99.97
PRK10157	428	putative oxidoreductase FixC; Provisional	99.96
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	99.95
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	99.94
PLN02697	529	lycopene epsilon cyclase	99.93
PLN02463	447	lycopene beta cyclase	99.91
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	99.88
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	99.85
PF08491	276	SE: Squalene epoxidase; InterPro: IPR013698 This d	99.81
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	99.8
COG2081	408	Predicted flavoproteins [General function predicti	99.59
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.55
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.54
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.5
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.45
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	99.43
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.42
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	99.38
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.37
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.36
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.36
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.36
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	99.35
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.34
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	99.31
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	99.28
COG0579	429	Predicted dehydrogenase [General function predicti	99.23
PLN02464	627	glycerol-3-phosphate dehydrogenase	99.21
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	99.21
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	99.2
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.2
PRK05257	494	malate:quinone oxidoreductase; Validated	99.17
PTZ00383	497	malate:quinone oxidoreductase; Provisional	99.16
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.16
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.16
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	99.15
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	99.14
PLN02661	357	Putative thiazole synthesis	99.14
PLN02612	567	phytoene desaturase	99.13
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	99.13
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	99.1
PRK12416	463	protoporphyrinogen oxidase; Provisional	99.1
PRK13339	497	malate:quinone oxidoreductase; Reviewed	99.09
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	99.07
TIGR00275	400	flavoprotein, HI0933 family. The model when search	99.07
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	99.07
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	99.07
PRK07233	434	hypothetical protein; Provisional	99.07
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	99.06
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	99.05
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	99.04
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.02
PRK11883	451	protoporphyrinogen oxidase; Reviewed	99.02
PRK07804	541	L-aspartate oxidase; Provisional	99.0
PRK08274	466	tricarballylate dehydrogenase; Validated	98.98
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	98.98
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	98.97
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.97
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.97
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	98.96
PRK07121	492	hypothetical protein; Validated	98.95
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	98.93
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.93
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	98.93
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	98.91
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.9
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.9
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	98.9
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	98.86
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.86
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.86
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	98.86
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	98.84
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.84
KOG2853	509	consensus Possible oxidoreductase [General functio	98.83
PLN02268	435	probable polyamine oxidase	98.82
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	98.82
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.81
PRK08401	466	L-aspartate oxidase; Provisional	98.81
PLN02576	496	protoporphyrinogen oxidase	98.81
PRK06175	433	L-aspartate oxidase; Provisional	98.8
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	98.8
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	98.8
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.8
PLN02487	569	zeta-carotene desaturase	98.79
PLN02815	594	L-aspartate oxidase	98.78
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.78
PRK13977	576	myosin-cross-reactive antigen; Provisional	98.77
PRK08275	554	putative oxidoreductase; Provisional	98.77
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.77
PRK12839	572	hypothetical protein; Provisional	98.76
PLN02568	539	polyamine oxidase	98.76
PLN02676	487	polyamine oxidase	98.76
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.75
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	98.75
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	98.75
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.74
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.74
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.74
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.74
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	98.73
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.73
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.72
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.72
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.72
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	98.72
PRK08071	510	L-aspartate oxidase; Provisional	98.71
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.71
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	98.7
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.69
PRK06116	450	glutathione reductase; Validated	98.69
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	98.68
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.68
PRK06370	463	mercuric reductase; Validated	98.68
PRK14694	468	putative mercuric reductase; Provisional	98.67
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.66
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.66
PRK07395	553	L-aspartate oxidase; Provisional	98.65
PRK09897	534	hypothetical protein; Provisional	98.65
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.65
PRK10262	321	thioredoxin reductase; Provisional	98.64
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	98.64
PRK09077	536	L-aspartate oxidase; Provisional	98.63
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.62
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	98.62
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.61
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.6
PLN02976	1713	amine oxidase	98.59
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.59
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.59
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.59
PLN02507	499	glutathione reductase	98.58
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.58
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	98.57
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	98.57
PRK07512	513	L-aspartate oxidase; Provisional	98.57
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.57
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	98.57
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	98.57
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.56
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	98.55
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.55
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	98.55
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.54
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	98.54
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.53
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	98.52
PRK13748	561	putative mercuric reductase; Provisional	98.51
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	98.5
KOG2852	380	consensus Possible oxidoreductase [General functio	98.49
PTZ00058	561	glutathione reductase; Provisional	98.49
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	98.47
PRK14727	479	putative mercuric reductase; Provisional	98.46
PLN02546	558	glutathione reductase	98.46
PLN02328	808	lysine-specific histone demethylase 1 homolog	98.45
TIGR02053	463	MerA mercuric reductase. This model represents the	98.45
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.44
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.43
PRK12831	464	putative oxidoreductase; Provisional	98.42
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	98.4
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.39
COG2907	447	Predicted NAD/FAD-binding protein [General functio	98.39
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.38
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.36
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	98.36
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	98.33
PTZ00052	499	thioredoxin reductase; Provisional	98.31
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.31
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.3
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.29
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.29
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.29
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	98.28
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.24
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.24
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	98.24
PLN03000	881	amine oxidase	98.23
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	98.21
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.21
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	98.18
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	98.18
PTZ00153	659	lipoamide dehydrogenase; Provisional	98.18
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.17
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.16
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	98.16
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	98.16
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	98.15
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.14
KOG2960	328	consensus Protein involved in thiamine biosynthesi	98.14
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.14
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.12
COG3349	485	Uncharacterized conserved protein [Function unknow	98.12
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.12
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.12
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	98.1
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.1
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.09
PRK07846	451	mycothione reductase; Reviewed	98.09
PRK06116	450	glutathione reductase; Validated	98.09
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.08
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	98.08
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	98.08
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	98.07
PRK06567	1028	putative bifunctional glutamate synthase subunit b	98.06
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	98.04
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.03
PLN02507	499	glutathione reductase	98.01
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	98.0
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.99
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	97.99
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	97.99
PRK07208	479	hypothetical protein; Provisional	97.99
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	97.98
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	97.98
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.96
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	97.96
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.95
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	97.95
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	97.93
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	97.93
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	97.92
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.91
PRK07846	451	mycothione reductase; Reviewed	97.91
COG3573	552	Predicted oxidoreductase [General function predict	97.91
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.9
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.89
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	97.89
PRK06370	463	mercuric reductase; Validated	97.88
PLN02852	491	ferredoxin-NADP+ reductase	97.87
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.87
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	97.83
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	97.83
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.83
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	97.81
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	97.81
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	97.8
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.78
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	97.76
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	97.75
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.74
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.74
PTZ00052	499	thioredoxin reductase; Provisional	97.74
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	97.73
PRK14694	468	putative mercuric reductase; Provisional	97.72
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	97.71
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	97.7
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	97.68
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.68
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	97.68
PRK09564	444	coenzyme A disulfide reductase; Reviewed	97.68
PRK14727	479	putative mercuric reductase; Provisional	97.65
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	97.64
PTZ00058	561	glutathione reductase; Provisional	97.63
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	97.63
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	97.62
PTZ00188	506	adrenodoxin reductase; Provisional	97.62
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.61
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.61
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	97.6
PRK13748	561	putative mercuric reductase; Provisional	97.56
PLN02546	558	glutathione reductase	97.54
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.48
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	97.48
PRK02106	560	choline dehydrogenase; Validated	97.47
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.46
PLN02529	738	lysine-specific histone demethylase 1	97.45
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	97.45
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.44
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	97.44
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	97.38
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.31
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	97.3
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.25
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	97.22
PRK10262	321	thioredoxin reductase; Provisional	97.21
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.14
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	97.13
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	97.12
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	97.09
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	97.09
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.07
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.05
PLN02785	587	Protein HOTHEAD	97.04
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	97.04
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	97.01
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.0
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	96.98
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	96.96
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	96.83
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	96.82
PRK13984	604	putative oxidoreductase; Provisional	96.8
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	96.79
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	96.68
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	96.66
PRK12770	352	putative glutamate synthase subunit beta; Provisio	96.63
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	96.56
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	96.5
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	96.45
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	96.35
PRK12831	464	putative oxidoreductase; Provisional	96.23
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	96.08
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	95.91
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	95.84
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	95.69
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	95.64
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	95.63
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	95.49
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	95.44
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	95.43
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	95.38
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	95.28
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	95.21
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.15
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	94.92
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	94.92
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	94.7
PRK12814	652	putative NADPH-dependent glutamate synthase small	94.54
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	94.53
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	94.44
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	94.42
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	94.24
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.23
PRK12779	944	putative bifunctional glutamate synthase subunit b	94.13
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.02
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	93.8
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	93.68
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	93.67
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	93.42
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	93.41
TIGR02053	463	MerA mercuric reductase. This model represents the	93.31
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	93.29
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	93.07
COG4716	587	Myosin-crossreactive antigen [Function unknown]	92.99
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	92.97
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	92.79
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	92.76
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	92.66
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	92.65
PRK06719	157	precorrin-2 dehydrogenase; Validated	92.63
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.55
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	92.5
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.4
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	92.25
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.16
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.08
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.07
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.83
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	91.82
KOG2755	334	consensus Oxidoreductase [General function predict	91.78
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	91.77
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	91.7
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	91.66
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	91.6
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	91.57
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	91.49
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	91.47
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	91.37
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	91.36
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	91.29
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	91.19
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	91.09
PLN02852	491	ferredoxin-NADP+ reductase	90.93
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	90.85
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	90.63
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.54
PRK06567	1028	putative bifunctional glutamate synthase subunit b	90.53
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	90.49
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	90.48
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	90.36
PRK13984	604	putative oxidoreductase; Provisional	90.27
PLN02353	473	probable UDP-glucose 6-dehydrogenase	90.02
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	89.94
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	89.94
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	89.83
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	89.69
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	89.66
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	89.59
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	89.56
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	89.54
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	89.32
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	89.26
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	89.23
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	89.0
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	88.98
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	88.95
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	88.91
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	88.9
PRK04148	134	hypothetical protein; Provisional	88.74
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	88.61
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	88.58
PRK15116	268	sulfur acceptor protein CsdL; Provisional	88.45
PRK07417	279	arogenate dehydrogenase; Reviewed	88.26
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	88.25
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	88.19
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	87.98
PTZ00082	321	L-lactate dehydrogenase; Provisional	87.95
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	87.89
PLN02256	304	arogenate dehydrogenase	87.73
PRK08306	296	dipicolinate synthase subunit A; Reviewed	87.68
PRK06223	307	malate dehydrogenase; Reviewed	87.52
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	87.5
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	87.4
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	87.19
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	87.13
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	86.94
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	86.9
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	86.87
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	86.83
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	86.68
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	86.59
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	86.52
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	86.48
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	86.32
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	86.27
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	86.1
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	86.02
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	85.91
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	85.88
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	85.69
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	85.56
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	85.5
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	85.45
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	85.45
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	85.22
PTZ00117	319	malate dehydrogenase; Provisional	85.03
PLN02529	738	lysine-specific histone demethylase 1	84.89
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	84.84
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	84.82
PLN02494	477	adenosylhomocysteinase	84.73
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	84.72
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	84.71
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	84.62
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	84.61
PRK05562	223	precorrin-2 dehydrogenase; Provisional	84.61
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	84.57
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	84.57
PRK11730	715	fadB multifunctional fatty acid oxidation complex	84.38
PRK09496	453	trkA potassium transporter peripheral membrane com	84.34
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	84.2
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	83.84
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	83.66
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	83.51
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	83.5
PLN02572	442	UDP-sulfoquinovose synthase	83.46
PRK08328	231	hypothetical protein; Provisional	83.4
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	83.39
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	83.27

>PRK08013 oxidoreductase; Provisional

Probab=100.00  E-value=5e-52  Score=424.95  Aligned_cols=395  Identities=34%  Similarity=0.582  Sum_probs=317.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      +++||+||||||+|+++|+.|++.    |++|+|+||.+.+....    +.....++..++++++++|+++|+++.+.+.
T Consensus         2 ~~~dV~IvGaGpaGl~~A~~La~~----G~~v~viE~~~~~~~~~----g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~   73 (400)
T PRK08013          2 QSVDVVIAGGGMVGLAVACGLQGS----GLRVAVLEQRVPEPLAA----DAPPALRVSAINAASEKLLTRLGVWQDILAR   73 (400)
T ss_pred             CcCCEEEECcCHHHHHHHHHHhhC----CCEEEEEeCCCCccccc----CCCCCceeeecchhHHHHHHHcCCchhhhhh
Confidence            358999999999999999999996    99999999998753210    1122457788999999999999999999876


Q ss_pred             hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (515)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~  213 (515)
                      ...+...+.+++......+.+..........++.++|..|.+.|.+.+.+.++++++++++|++++.             
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~-------------  140 (400)
T PRK08013         74 RASCYHGMEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAW-------------  140 (400)
T ss_pred             cCccccEEEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEe-------------
Confidence            5557788888876543344444333333445689999999999999999875599999999999976             


Q ss_pred             CcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC-ceEEEEecCCCcEE
Q 010200          214 SATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIA  292 (515)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~  292 (515)
                             ++..+++++.+|+++++|+||+|||.+|.||+.+++......|...++++.++...+. ...++.+.++++++
T Consensus       141 -------~~~~v~v~~~~g~~i~a~lvVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~  213 (400)
T PRK08013        141 -------GENEAFLTLKDGSMLTARLVVGADGANSWLRNKADIPLTFWDYQHHALVATIRTEEPHDAVARQVFHGDGILA  213 (400)
T ss_pred             -------cCCeEEEEEcCCCEEEeeEEEEeCCCCcHHHHHcCCCccccccCcEEEEEEEeccCCCCCEEEEEEcCCCCEE
Confidence                   3355888888999999999999999999999999988888888888888888766544 34567788889999


Q ss_pred             EEecCCCc-eEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCcce
Q 010200          293 LLPIGDNF-SNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRV  371 (515)
Q Consensus       293 ~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  371 (515)
                      ++|+.++. .+++|..+.+........+.+.|.+.+...++    +.               ++             .  
T Consensus       214 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~---------------l~-------------~--  259 (400)
T PRK08013        214 FLPLSDPHLCSIVWSLSPEEAQRMQQAPEEEFNRALAIAFD----NR---------------LG-------------L--  259 (400)
T ss_pred             EEECCCCCeEEEEEEcCHHHHHHHHcCCHHHHHHHHHHHHh----Hh---------------hC-------------c--
Confidence            99998754 67888876655444445566777777765332    00               00             0  


Q ss_pred             EEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHHHh
Q 010200          372 VKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAER  451 (515)
Q Consensus       372 ~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~~r  451 (515)
                      ..+......||+....+++|..+||+|+|||||.++|+.|||+|+||+||..|+++|...+..+.+.....+|+.|+++|
T Consensus       260 ~~~~~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gi~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R  339 (400)
T PRK08013        260 CELESERQVFPLTGRYARQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAELRRLHRQGKDIGQHLYLRRYERSR  339 (400)
T ss_pred             eEecCCccEEecceeecccccCCcEEEEechhhcCCccccCchhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence            11122233577777778999999999999999999999999999999999999999998776554444456899999999


Q ss_pred             hHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhcCCCCCCC
Q 010200          452 KPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQRLPLP  510 (515)
Q Consensus       452 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  510 (515)
                      +++...++..++.+.++|+..+++..++|+.++.+++.+|++++.++++++|+...|-.
T Consensus       340 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~R~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~  398 (400)
T PRK08013        340 KHSAALMLAGMQGFRDLFAGNNPAKKLLRDIGLKLADTLPGVKPQLIRQAMGLNDLPEW  398 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhCHHHHHHHHHHHccCcCCccc
Confidence            99999999999999999999999999999999999999999999999999997656543

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=100.00  E-value=2.3e-51  Score=421.23  Aligned_cols=389  Identities=35%  Similarity=0.593  Sum_probs=320.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC-CCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP-ALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (515)
                      ..+||+||||||+||++|+.|++.    |++|+|+|+.. .+. .     ......++..++++++++|+++|+++.+.+
T Consensus         3 ~~~dV~IvGaG~~Gl~~A~~L~~~----G~~v~viE~~~~~~~-~-----~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~   72 (405)
T PRK08850          3 QSVDVAIIGGGMVGLALAAALKES----DLRIAVIEGQLPEEA-L-----NELPDVRVSALSRSSEHILRNLGAWQGIEA   72 (405)
T ss_pred             CcCCEEEECccHHHHHHHHHHHhC----CCEEEEEcCCCCccc-c-----cCCCCcceecccHHHHHHHHhCCchhhhhh
Confidence            468999999999999999999996    99999999973 221 0     111346788999999999999999999987


Q ss_pred             hhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCC
Q 010200          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (515)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~  212 (515)
                      ....++..+.+|+........++.........++.+++..+.+.|.+.+.+.++++++++++|++++.            
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~------------  140 (405)
T PRK08850         73 RRAAPYIAMEVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAV------------  140 (405)
T ss_pred             hhCCcccEEEEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEe------------
Confidence            65557788899887655555555444444456788999999999999998875699999999999976            


Q ss_pred             CCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC-ceEEEEecCCCcE
Q 010200          213 PSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPI  291 (515)
Q Consensus       213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~  291 (515)
                              +...+++++++|+++.||+||+|||.+|.+|+.++.......|+..++++.++...++ ...+++|.+++++
T Consensus       141 --------~~~~~~v~~~~g~~~~a~lvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~  212 (405)
T PRK08850        141 --------GESEAWLTLDNGQALTAKLVVGADGANSWLRRQMDIPLTHWDYGHSALVANVRTVDPHNSVARQIFTPQGPL  212 (405)
T ss_pred             --------eCCeEEEEECCCCEEEeCEEEEeCCCCChhHHHcCCCeeEEeeccEEEEEEEEccCCCCCEEEEEEcCCCce
Confidence                    3356788888999999999999999999999999988888888888898888765444 4567788899999


Q ss_pred             EEEecCC-CceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCcc
Q 010200          292 ALLPIGD-NFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPR  370 (515)
Q Consensus       292 ~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  370 (515)
                      .++|+.+ +.++++|..+..........+.+++.+.+.+.+...+                   +               
T Consensus       213 ~~lp~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------------------~---------------  258 (405)
T PRK08850        213 AFLPMSEPNMSSIVWSTEPLRAEALLAMSDEQFNKALTAEFDNRL-------------------G---------------  258 (405)
T ss_pred             EEEECCCCCeEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhh-------------------C---------------
Confidence            9999986 4568889887665555556677788887777553100                   0               


Q ss_pred             eEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHHH
Q 010200          371 VVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAE  450 (515)
Q Consensus       371 ~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~~  450 (515)
                      ..........||+....+++|..++|+|+|||||+++|+.|||+|+||+||..|+++|...+..+.+.+...+|+.|+++
T Consensus       259 ~~~~~~~~~~~pl~~~~~~~~~~~rv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~  338 (405)
T PRK08850        259 LCEVVGERQAFPLKMRYARDFVRERVALVGDAAHTIHPLAGQGVNLGLLDAASLAQEILALWQQGRDIGLKRNLRGYERW  338 (405)
T ss_pred             cEEEcccccEEecceeeccccccCcEEEEEhhhhcCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Confidence            01222233457887777889999999999999999999999999999999999999999887655555557899999999


Q ss_pred             hhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhcCCC
Q 010200          451 RKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQR  506 (515)
Q Consensus       451 r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~~  506 (515)
                      |++++..++..++.+.++|+..+++..++|+.++.++..+|++++.++++.+|+..
T Consensus       339 R~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~g~~~  394 (405)
T PRK08850        339 RKAEAAKMIAAMQGFRDLFSGSNPAKKLVRGIGMSLAGQLPGAKDEIMKRALGLKG  394 (405)
T ss_pred             HhHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhCHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999999999999999999999999999754

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=100.00  E-value=8.4e-51  Score=415.56  Aligned_cols=388  Identities=34%  Similarity=0.567  Sum_probs=318.3

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhh
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (515)
                      ...+||+||||||+|+++|+.|++.    |++|+||||.+.+....+     ....+...++++++++|+.+|+++.+.+
T Consensus         4 ~~~~dV~IvGaG~aGl~~A~~La~~----G~~v~liE~~~~~~~~~~-----~~~~r~~~l~~~~~~~l~~lGl~~~~~~   74 (392)
T PRK08773          4 RSRRDAVIVGGGVVGAACALALADA----GLSVALVEGREPPRWQAD-----QPDLRVYAFAADNAALLDRLGVWPAVRA   74 (392)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcC----CCEEEEEeCCCCcccccC-----CCCCEEEEecHHHHHHHHHCCchhhhhH
Confidence            3568999999999999999999996    999999999986532211     1235678899999999999999999987


Q ss_pred             hhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCC
Q 010200          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (515)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~  212 (515)
                      ....++..+.+|+..+.....++.........++.++|..|.+.|.+.+.+.| ++++++++|++++.            
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~g-v~i~~~~~v~~i~~------------  141 (392)
T PRK08773         75 ARAQPYRRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAG-VQLHCPARVVALEQ------------  141 (392)
T ss_pred             hhCCcccEEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCC-CEEEcCCeEEEEEe------------
Confidence            54446777888875544445554433334456789999999999999999887 99999999999976            


Q ss_pred             CCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC-ceEEEEecCCCcE
Q 010200          213 PSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPI  291 (515)
Q Consensus       213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~  291 (515)
                              +++.+++++++|+++.+|+||+|||.+|.+|+.++.......|...++.+.++...+. ...++.+.+++++
T Consensus       142 --------~~~~v~v~~~~g~~~~a~~vV~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~  213 (392)
T PRK08773        142 --------DADRVRLRLDDGRRLEAALAIAADGAASTLRELAGLPVSRHDYAQRGVVAFVDTEHPHQATAWQRFLPTGPL  213 (392)
T ss_pred             --------cCCeEEEEECCCCEEEeCEEEEecCCCchHHHhhcCCceEEEeccEEEEEEEEccCCCCCEEEEEeCCCCcE
Confidence                    3355778888888999999999999999999999877766677777777776655443 5667788899999


Q ss_pred             EEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCcce
Q 010200          292 ALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRV  371 (515)
Q Consensus       292 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  371 (515)
                      .++|.+++...++|..+.+........+.+.+.+.+.+.|. .+...                                 
T Consensus       214 ~~lP~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~---------------------------------  259 (392)
T PRK08773        214 ALLPFADGRSSIVWTLPDAEAERVLALDEAAFSRELTQAFA-ARLGE---------------------------------  259 (392)
T ss_pred             EEEECCCCceEEEEECCHHHHHHHHcCCHHHHHHHHHHHHh-hhhcC---------------------------------
Confidence            99999999989999987655555556677788888877665 12111                                 


Q ss_pred             EEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHHHh
Q 010200          372 VKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAER  451 (515)
Q Consensus       372 ~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~~r  451 (515)
                      +........||+....+++|..+||+|+|||||.++|+.|||+|+||+||..|+++|.+.+..+.+++...+|+.|+++|
T Consensus       260 ~~~~~~~~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~l~~y~~~R  339 (392)
T PRK08773        260 VRVASPRTAFPLRRQLVQQYVSGRVLTLGDAAHVVHPLAGQGVNLGLRDVAALQQLVRQAHARRADWAAPHRLQRWARTR  339 (392)
T ss_pred             eEecCCccEeechhhhhhhhcCCcEEEEechhhcCCCchhchhhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence            01112233578777778999999999999999999999999999999999999999998877666666788999999999


Q ss_pred             hHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhcC
Q 010200          452 KPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGE  504 (515)
Q Consensus       452 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~  504 (515)
                      +++...+...++.+.++|+.++++..++|+..+.+++.+|++|+.++++++|.
T Consensus       340 ~~~~~~~~~~~~~l~~~f~~~~~~~~~~r~~~l~~~~~~~~~k~~~~~~~~g~  392 (392)
T PRK08773        340 RSDNTVAAYGFDAINRVFSNDEMHLTLLRGSVLGLAGKLPPLVDALWKRASGV  392 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999984

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=100.00  E-value=5.8e-51  Score=418.59  Aligned_cols=395  Identities=36%  Similarity=0.633  Sum_probs=313.7

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      .+||+||||||+|+++|+.|++.    |++|+|+|+.+......  ........++..++++++++|+.+|+++.+.+..
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~----G~~v~viE~~~~~~~~~--~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~   75 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGS----GLEVLLLDGGPLSVKPF--DPQAPFEPRVSALSAASQRILERLGAWDGIAARR   75 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcC----CCEEEEEcCCCcccccc--ccCCCCCccchhhhHHHHHHHHHCChhhhhhHhh
Confidence            47999999999999999999996    99999999987321000  0011123456789999999999999999988755


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                      ..+...+.+++..+...+.+..........++.+++..+.+.|.+.+.+.+ +++++++++++++.              
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~g-v~v~~~~~v~~i~~--------------  140 (405)
T PRK05714         76 ASPYSEMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSD-IGLLANARLEQMRR--------------  140 (405)
T ss_pred             CccceeEEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCC-CEEEcCCEEEEEEE--------------
Confidence            446788888887665555554333333455788999999999999998887 99999999999976              


Q ss_pred             cccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC-ceEEEEecCCCcEEE
Q 010200          215 ATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIAL  293 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~  293 (515)
                            .++.++|++++|.++.+|+||+|||.+|.+|+.++.......|...+++..+....+. ...|+.+.+.+++++
T Consensus       141 ------~~~~v~v~~~~g~~~~a~~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  214 (405)
T PRK05714        141 ------SGDDWLLTLADGRQLRAPLVVAADGANSAVRRLAGCATREWDYLHHAIVTSVRCSEPHRATAWQRFTDDGPLAF  214 (405)
T ss_pred             ------cCCeEEEEECCCCEEEeCEEEEecCCCchhHHhcCCCcccccCCceEEEEEEEcCCCCCCEEEEEcCCCCCeEE
Confidence                  3455888888998999999999999999999999887777778777777766554333 456777889999999


Q ss_pred             EecCCC----ceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCc
Q 010200          294 LPIGDN----FSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPP  369 (515)
Q Consensus       294 ~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  369 (515)
                      +|++++    ...++|..+++........+.+.|.+.+.+.|.. +-.                                
T Consensus       215 ~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~--------------------------------  261 (405)
T PRK05714        215 LPLERDGDEHWCSIVWSTTPEEAERLMALDDDAFCAALERAFEG-RLG--------------------------------  261 (405)
T ss_pred             eeCCCCCCCCeEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHH-HhC--------------------------------
Confidence            999743    2456677766554455556778888888775541 100                                


Q ss_pred             ceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHH
Q 010200          370 RVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA  449 (515)
Q Consensus       370 ~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~  449 (515)
                      .+.. ......||+....+++|..+||+|+|||||+|+|+.|||+|+||+||..|+++|......+.+++...+|+.|++
T Consensus       262 ~~~~-~~~~~~~~l~~~~~~~~~~~rv~LlGDAAH~~~P~~GQG~n~al~DA~~La~~L~~~~~~g~~~~~~~~L~~Ye~  340 (405)
T PRK05714        262 EVLS-ADPRLCVPLRQRHAKRYVEPGLALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLLHAAERGERLADVRVLSRFER  340 (405)
T ss_pred             Ccee-cCCccEEecceeehhhhccCCEEEEEeccccCCCcccccccHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence            0111 122335788887889999999999999999999999999999999999999999887654444445789999999


Q ss_pred             HhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhcC-CCCCCC
Q 010200          450 ERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGE-QRLPLP  510 (515)
Q Consensus       450 ~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~  510 (515)
                      .|+++...++..++.+.++|+..+++...+|+..++.++.+|++|+.++++++|. +.+|-.
T Consensus       341 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~g~~~~~~~~  402 (405)
T PRK05714        341 RRMPHNLALMAAMEGFERLFQADPLPLRWLRNTGLKLVDQMPEAKALFVRQALGLSGDLPEL  402 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhCHHHHHHHHHHHhcCCCCCchh
Confidence            9999999999999999999999999999999999999999999999999999996 446643

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=100.00  E-value=1.4e-50  Score=418.34  Aligned_cols=427  Identities=45%  Similarity=0.790  Sum_probs=326.2

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCC--CCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNF--IKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      |||+||||||+|+++|+.|++.+...|++|+|||+.+.+...+.  ....+....+++.++++++++|+.+|+++.+.+.
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~   80 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD   80 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence            69999999999999999999821112999999999665432210  0001113467999999999999999999999876


Q ss_pred             hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCC--CceEEcCCeeEEEEeCCCCCCcccCC
Q 010200          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTE--FQKTIYPSRLTSMALLPSSSSISVDS  211 (515)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g--~v~i~~~~~v~~i~~~~~~~~~~~~~  211 (515)
                      ...++..+.+++..+.....++... .....++.+++..+.+.|.+.+.+.+  +++++++++|++++..+.        
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~--------  151 (437)
T TIGR01989        81 RIQPFGRMQVWDGCSLALIRFDRDN-GKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSK--------  151 (437)
T ss_pred             cCCceeeEEEecCCCCceEEeecCC-CCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccc--------
Confidence            5557778888876655455555432 23455788999999999999998876  699999999999975100        


Q ss_pred             CCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeec--CCceEEEEecCCC
Q 010200          212 TPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK--ENYCAWQRFLPAG  289 (515)
Q Consensus       212 ~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g  289 (515)
                      +.+     ++...+++++.+|++++||+||+|||.+|.||+.+++...+..|.+.++++.+....  .....++.|.++|
T Consensus       152 ~~~-----~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v~~v~~~~~~~~~~~~~~f~~~g  226 (437)
T TIGR01989       152 YPN-----DNSNWVHITLSDGQVLYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVATLKLEEATENDVAWQRFLPTG  226 (437)
T ss_pred             ccc-----CCCCceEEEEcCCCEEEeeEEEEecCCCChhHHHcCCCccceeeccEEEEEEEEcccCCCCCeEEEEECCCC
Confidence            000     123568889999999999999999999999999999999889999999999887754  2357788899999


Q ss_pred             cEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccc---ccccccc
Q 010200          290 PIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATL---SAKECFE  366 (515)
Q Consensus       290 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  366 (515)
                      ++.++|++++..+++|..+..........+.+++...+.+.+..+|.+.|.......  .+.++......   .....+.
T Consensus       227 ~~~~lPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~--~~~~l~~~~~~~~~~~~~~~~  304 (437)
T TIGR01989       227 PIALLPLPDNNSTLVWSTSPEEALRLLSLPPEDFVDALNAAFDLGYSDHPYSYLLDY--AMEKLNEDIGFRTEGSKSCFQ  304 (437)
T ss_pred             CEEEeECCCCCEEEEEeCCHHHHHHHHcCCHHHHHHHHHHHhccccccccccccccc--ccccccccccccccccccccc
Confidence            999999999999999998776666666788899998888877322322221000000  01111100000   0001111


Q ss_pred             CCcceEEecc-ceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHH
Q 010200          367 VPPRVVKLAS-ERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLK  445 (515)
Q Consensus       367 i~~~~~~~~~-~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~  445 (515)
                      +++.+..+.. ....||+....+++|..+||+|+|||||.++|+.|||+|+||+||..|+++|....+.+.+++...+|+
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~~~~L~  384 (437)
T TIGR01989       305 VPPRVIGVVDKSRAAFPLGLGHADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSVGADIGSISSLK  384 (437)
T ss_pred             cCchhheeecccceeEEecccchhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHH
Confidence            2332333222 335689888889999999999999999999999999999999999999999999887665665568999


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHH
Q 010200          446 KYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNII  498 (515)
Q Consensus       446 ~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~  498 (515)
                      .|+++|++++..++..++.+.++|+..+++...+|+.++.+++.+|++|+.++
T Consensus       385 ~Y~~~R~~~~~~v~~~t~~l~~l~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~  437 (437)
T TIGR01989       385 PYERERYAKNVVLLGLVDKLHKLYATDFPPVVALRTFGLNLTNYIGPLKNFIM  437 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhhhCHHhHHhhC
Confidence            99999999999999999999999999999999999999999999999999874

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=100.00  E-value=1e-50  Score=411.61  Aligned_cols=370  Identities=28%  Similarity=0.456  Sum_probs=300.8

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      +||+||||||+|+++|+.|++.    |++|+|+|+.+....      .....++++.++++++++|+.+|+++.+.+...
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~----G~~v~l~E~~~~~~~------~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~   71 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQK----GIKTTIFESKSVKSP------EFFKDIRTTALTPHSKNFLFSIDIWEELEKFVA   71 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcC----CCeEEEecCCCCCCC------ccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcC
Confidence            6899999999999999999996    999999999864310      112346799999999999999999999876544


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                       ++..+.+++..+.....+..  ......++.++|.+|.+.|.+.+.+.+++++++++++++++.               
T Consensus        72 -~~~~~~~~~~~g~~~~~~~~--~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~---------------  133 (374)
T PRK06617         72 -EMQDIYVVDNKASEILDLRN--DADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVIS---------------  133 (374)
T ss_pred             -CCcEEEEEECCCceEEEecC--CCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEE---------------
Confidence             77888888776655555543  233446799999999999999999987789999999999976               


Q ss_pred             ccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC-ceEEEEecCCCcEEEE
Q 010200          216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALL  294 (515)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~  294 (515)
                           ..+.+++.++++ ++++|+||+|||.+|.+|+.++.......| +.++.+.++...++ ...++.+.+.|+++++
T Consensus       134 -----~~~~v~v~~~~~-~~~adlvIgADG~~S~vR~~l~~~~~~~~y-~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~l  206 (374)
T PRK06617        134 -----HNDYSIIKFDDK-QIKCNLLIICDGANSKVRSHYFANEIEKPY-QTALTFNIKHEKPHENCAMEHFLPLGPFALL  206 (374)
T ss_pred             -----cCCeEEEEEcCC-EEeeCEEEEeCCCCchhHHhcCCCcccccC-CeEEEEEEeccCCCCCEEEEEecCCCCEEEe
Confidence                 335578888776 899999999999999999999877666667 67777777765544 3467888899999999


Q ss_pred             ecCCCc-eEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCcceEE
Q 010200          295 PIGDNF-SNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVK  373 (515)
Q Consensus       295 p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  373 (515)
                      |++++. ..++|....+........+.+.+...+...+.                   +.++              . +.
T Consensus       207 Pl~~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~--------------~-i~  252 (374)
T PRK06617        207 PLKDQYASSVIWSTSSDQAALIVNLPVEEVRFLTQRNAG-------------------NSLG--------------K-IT  252 (374)
T ss_pred             ECCCCCeEEEEEeCCHHHHHHHHcCCHHHHHHHHHHhhc-------------------hhcC--------------c-ee
Confidence            999875 68889886544444445555666555544221                   1001              0 12


Q ss_pred             eccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHHHhhH
Q 010200          374 LASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKP  453 (515)
Q Consensus       374 ~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~~r~~  453 (515)
                      .......||+....+++|..+||+|+|||||+|+|+.|||+|+||+||..|+++|..          ..+|+.|++.|++
T Consensus       253 ~~~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gl~Da~~La~~L~~----------~~~L~~Ye~~R~~  322 (374)
T PRK06617        253 IDSEISSFPLKARIANRYFHNRIVLIADTAHTVHPLAGQGLNQGIKDIEILSMIVSN----------NGTLQEYQKLRQE  322 (374)
T ss_pred             eccceeEEEeeeeeccceecCCEEEEEcccccCCCCccccHHHHHHHHHHHHHHHcC----------cchHHHHHHHHhH
Confidence            223345689888888999999999999999999999999999999999999999832          2489999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhcC
Q 010200          454 ANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGE  504 (515)
Q Consensus       454 ~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~  504 (515)
                      +...++..++.+.++|+...++...+|+..|.+++.+|++|+.++++++|.
T Consensus       323 ~~~~~~~~t~~l~~~f~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~g~  373 (374)
T PRK06617        323 DNFIMYKLTDELNNIFSNYSKNLRCLRQIGFKVINNFKPIKNLITSYAMGK  373 (374)
T ss_pred             HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHhcCC
Confidence            999999999999999999999999999999999999999999999999984

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=100.00  E-value=1.9e-49  Score=409.04  Aligned_cols=388  Identities=32%  Similarity=0.565  Sum_probs=305.4

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhh
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQ  131 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~  131 (515)
                      +..++||+||||||+|+++|+.|++.    |++|+||||.+.+..        ...++++.++++++++|+.+|+++++.
T Consensus        15 ~~~~~dV~IvGaG~aGl~~A~~L~~~----G~~v~v~E~~~~~~~--------~~~g~~~~l~~~~~~~L~~lGl~~~l~   82 (415)
T PRK07364         15 RSLTYDVAIVGGGIVGLTLAAALKDS----GLRIALIEAQPAEAA--------AAKGQAYALSLLSARIFEGIGVWEKIL   82 (415)
T ss_pred             CccccCEEEECcCHHHHHHHHHHhcC----CCEEEEEecCCcccc--------CCCCcEEEechHHHHHHHHCChhhhhH
Confidence            44569999999999999999999996    999999999987621        123568899999999999999999988


Q ss_pred             hhhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCC
Q 010200          132 QHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDS  211 (515)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~  211 (515)
                      +... +...+.+++..+.....+..........++.+.+..+.+.|++.+.+.++++++++++|++++.           
T Consensus        83 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~-----------  150 (415)
T PRK07364         83 PQIG-KFRQIRLSDADYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEY-----------  150 (415)
T ss_pred             hhcC-CccEEEEEeCCCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEe-----------
Confidence            7655 6677777765544344444332223344566666689999999998876699999999999976           


Q ss_pred             CCCcccccccCCeeEEEcCC--C-cEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC-ceEEEEecC
Q 010200          212 TPSATTLFTKGHLAKLDLSD--G-TSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLP  287 (515)
Q Consensus       212 ~~~~~~~~~~~~~~~v~~~~--g-~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  287 (515)
                               +++.+.+++++  + .+++||+||+|||.+|.+|+.++.......+...++.+.++...+. ...+..|.+
T Consensus       151 ---------~~~~~~v~~~~~~~~~~i~adlvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (415)
T PRK07364        151 ---------QQDAATVTLEIEGKQQTLQSKLVVAADGARSPIRQAAGIKTKGWKYWQSCVTATVKHEAPHNDIAYERFWP  221 (415)
T ss_pred             ---------cCCeeEEEEccCCcceEEeeeEEEEeCCCCchhHHHhCCCceeecCCCEEEEEEEEccCCCCCEEEEEecC
Confidence                     33456677653  2 3699999999999999999999887776777667777766654433 334556678


Q ss_pred             CCcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccC
Q 010200          288 AGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEV  367 (515)
Q Consensus       288 ~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  367 (515)
                      .++++++|++++..+++|..+.+........+.+++.+.+.+.+. .|.+.                             
T Consensus       222 ~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~-----------------------------  271 (415)
T PRK07364        222 SGPFAILPLPGNRCQIVWTAPHAQAKALLALPEAEFLAELQQRYG-DQLGK-----------------------------  271 (415)
T ss_pred             CCCeEEeECCCCCEEEEEECCHHHHHHHHCCCHHHHHHHHHHHhh-hhhcC-----------------------------
Confidence            899999999999888888865544344445667788887777554 22111                             


Q ss_pred             CcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHH
Q 010200          368 PPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKY  447 (515)
Q Consensus       368 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y  447 (515)
                         + ........+|+....+++|..++++|||||||.++|+.|||+|+||+||..|+++|....+.+.++....+|+.|
T Consensus       272 ---~-~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~DA~~La~~L~~~~~~~~~~~~~~~L~~Y  347 (415)
T PRK07364        272 ---L-ELLGDRFLFPVQLMQSDRYVQHRLALVGDAAHCCHPVGGQGLNLGIRDAAALAQVLQTAHQRGEDIGSLAVLKRY  347 (415)
T ss_pred             ---c-eecCCCceecchhhhhhhhcCCcEEEEecccccCCCcccccHhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence               0 011122347776667788999999999999999999999999999999999999999876544455446899999


Q ss_pred             HHHhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhcCCC
Q 010200          448 EAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQR  506 (515)
Q Consensus       448 ~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~~  506 (515)
                      ++.|+++...++..++.+.++|+.++++..++|+.+++++..+|++++.++++++|+..
T Consensus       348 ~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~~  406 (415)
T PRK07364        348 ERWRKRENWLILGFTDLLDRLFSNQWWPLVVVRRLGLWLLRHVPPLKRLALRLMTGLKG  406 (415)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhCHHHHHHHHHHHcCCCc
Confidence            99999999999999999999999999999999999999999999999999999999765

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=100.00  E-value=4.2e-49  Score=401.43  Aligned_cols=381  Identities=33%  Similarity=0.603  Sum_probs=302.6

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      .+||+||||||+|+++|+.|++.    |++|+|||+.+......    .+....+++.++++++++|+.+|+++.+.+..
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~----G~~v~l~E~~~~~~~~~----~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~   74 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQ----GRSVAVIEGGEPKAFEP----SQPMDIRVSAISQTSVDLLESLGAWSSIVAMR   74 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhC----CCcEEEEcCCCcccCCC----CCCCCccEEEecHHHHHHHHHCCCchhhhHhh
Confidence            58999999999999999999996    99999999876321000    01123466899999999999999999997754


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                      ..++..+..++... ....+..........++.+.+..|...|.+++.+.++++++++++|++++.              
T Consensus        75 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~--------------  139 (384)
T PRK08849         75 VCPYKRLETWEHPE-CRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEF--------------  139 (384)
T ss_pred             CCccceEEEEeCCC-ceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEE--------------
Confidence            44667777766432 223343323333445688888899999999988876799999999999986              


Q ss_pred             cccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC-ceEEEEecCCCcEEE
Q 010200          215 ATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIAL  293 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~  293 (515)
                            +++.+++++++|.++++|+||+|||.+|.+|+.++.....+.|...++.+.+....+. ...++.+.+.|...+
T Consensus       140 ------~~~~~~v~~~~g~~~~~~lvIgADG~~S~vR~~~gi~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~  213 (384)
T PRK08849        140 ------SAEGNRVTLESGAEIEAKWVIGADGANSQVRQLAGIGITAWDYRQHCMLINVETEQPQQDITWQQFTPSGPRSF  213 (384)
T ss_pred             ------cCCeEEEEECCCCEEEeeEEEEecCCCchhHHhcCCCceeccCCCeEEEEEEEcCCCCCCEEEEEeCCCCCEEE
Confidence                  3456889999999999999999999999999999887777888887777776655433 567778888899888


Q ss_pred             EecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCcceEE
Q 010200          294 LPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVK  373 (515)
Q Consensus       294 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  373 (515)
                      +|+.++...++|+..+.........+.+.+.+.+.+.|+ .+-..                                + .
T Consensus       214 ~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~--------------------------------~-~  259 (384)
T PRK08849        214 LPLCGNQGSLVWYDSPKRIKQLSAMNPEQLRSEILRHFP-AELGE--------------------------------I-K  259 (384)
T ss_pred             eEcCCCceEEEEECCHHHHHHHHcCCHHHHHHHHHHHhh-hhhCc--------------------------------E-E
Confidence            999887777888765443333444577888888877654 11000                                0 1


Q ss_pred             eccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHHHhhH
Q 010200          374 LASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKP  453 (515)
Q Consensus       374 ~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~~r~~  453 (515)
                      . .....||+....+++|..++|+|+|||||+|+|+.|||+|+||+||..|+++|...   +.  ....+|+.|++.|++
T Consensus       260 ~-~~~~~~~l~~~~~~~~~~grv~LlGDAAH~~~P~~GQG~n~al~Da~~L~~~l~~~---~~--~~~~~L~~Ye~~R~~  333 (384)
T PRK08849        260 V-LQHGSFPLTRRHAQQYVKNNCVLLGDAAHTINPLAGQGVNLGFKDVDVLLAETEKQ---GV--LNDASFARYERRRRP  333 (384)
T ss_pred             e-ccceEeeccccccchhccCCEEEEEcccccCCCCccchHhHHHHHHHHHHHHHHhc---CC--CcHHHHHHHHHHHhH
Confidence            1 12335787777789999999999999999999999999999999999999998642   21  237899999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhcC
Q 010200          454 ANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGE  504 (515)
Q Consensus       454 ~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~  504 (515)
                      +...++..++.+.++|+..+++...+|+..+..++.+|++|+.++++++|+
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~g~  384 (384)
T PRK08849        334 DNLLMQTGMDLFYKTFSNSLTPLKFVRNAALKLAENSGPLKTQVLKYALGM  384 (384)
T ss_pred             HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccHHHHHHHHHHHcCC
Confidence            999999999999999999989999999999999999999999999999984

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=100.00  E-value=2.8e-49  Score=402.47  Aligned_cols=381  Identities=34%  Similarity=0.512  Sum_probs=324.7

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC-CCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP-ALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      .+||+||||||+||++|+.|++.    |++|+||||.+ ..          ...++++.++++++++|+++|+.+.+...
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~----G~~V~l~E~~~~~~----------~~~~r~~~l~~~~~~~L~~lG~~~~i~~~   67 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARA----GLDVTLLERAPREL----------LERGRGIALSPNALRALERLGLWDRLEAL   67 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC----CCcEEEEccCcccc----------ccCceeeeecHhHHHHHHHcCChhhhhhc
Confidence            57999999999999999999996    99999999982 22          34458999999999999999998888887


Q ss_pred             hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (515)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~  213 (515)
                      ...+...+.++.... ....++.........++.+.+..|.+.|.+.+.+.++++++++++|+.++.             
T Consensus        68 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~-------------  133 (387)
T COG0654          68 GVPPLHVMVVDDGGR-RLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQ-------------  133 (387)
T ss_pred             cCCceeeEEEecCCc-eeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEE-------------
Confidence            775666666655443 445555555555677899999999999999999998899999999999987             


Q ss_pred             CcccccccCCeeEEEcC-CCcEEEeeEEEEecCCCchhhhhcC-CccccccCCceEEEEEEEeecC-CceEEEEecCCCc
Q 010200          214 SATTLFTKGHLAKLDLS-DGTSLYAKLVVGADGGKSRVRELAG-FKTTGWSYSQNAIICTVEHNKE-NYCAWQRFLPAGP  290 (515)
Q Consensus       214 ~~~~~~~~~~~~~v~~~-~g~~~~ad~vV~AdG~~S~vr~~l~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~  290 (515)
                             +++.+++++. +|++++||+||+|||.+|.||+.++ .......|...++...+..+.+ ....++.+.+.++
T Consensus       134 -------~~~~v~v~l~~dG~~~~a~llVgADG~~S~vR~~~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~  206 (387)
T COG0654         134 -------DGDGVTVTLSFDGETLDADLLVGADGANSAVRRAAGIAEFSGRDYGQTALVANVEPEEPHEGRAGERFTHAGP  206 (387)
T ss_pred             -------cCCceEEEEcCCCcEEecCEEEECCCCchHHHHhcCCCCccCCCCCceEEEEEeecCCCCCCeEEEEecCCCc
Confidence                   3455667777 9999999999999999999999998 4445558899999998888744 4788889999999


Q ss_pred             EEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCcc
Q 010200          291 IALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPR  370 (515)
Q Consensus       291 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  370 (515)
                      +.++|++++...++|+............+.+.+...+.+.++.  ...               +               .
T Consensus       207 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~---------------~---------------~  254 (387)
T COG0654         207 FALLPLPDNRSSVVWSLPPGPAEDLQGLSDEEFLRELQRRLGE--RDP---------------L---------------G  254 (387)
T ss_pred             eEEEecCCCceeEEEECChhhHHHHhcCCHHHHHHHHHHhcCc--ccc---------------c---------------c
Confidence            9999999999999999999888888889999998888886651  100               0               0


Q ss_pred             eEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHHH
Q 010200          371 VVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAE  450 (515)
Q Consensus       371 ~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~~  450 (515)
                      ..........||+....+.+|..+|++|+|||||+|+|+.|||+|+||+||..|++.|.+....+.+   ..+|+.|+++
T Consensus       255 ~~~~~~~~~~~pl~~~~a~~~~~~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~~~~~---~~~L~~Y~~~  331 (387)
T COG0654         255 RVTLVSSRSAFPLSLRVAERYRRGRVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPRPGAD---AAALAAYEAR  331 (387)
T ss_pred             eEEEccccccccccchhhhheecCcEEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhhcCcc---HHHHHHHHHh
Confidence            1334445556899888899999999999999999999999999999999999999999998875433   7899999999


Q ss_pred             hhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhcCC
Q 010200          451 RKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ  505 (515)
Q Consensus       451 r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~  505 (515)
                      |++++.+++..++.+.+.|+...++...+|+..++++...+..+..++++..|..
T Consensus       332 R~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~  386 (387)
T COG0654         332 RRPRAEAIQKLSRALGRLFSADGPFARFLRNLGLRLLDRLPPLREALARLAAGLV  386 (387)
T ss_pred             hhhHHHHHHHHHHHHhhhhccCCcHHHHHHHHHHHhhccCccHHHHHHHHhccCC
Confidence            9999999999999999999999999999999999999998999999999887753

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=100.00  E-value=1.6e-48  Score=400.58  Aligned_cols=390  Identities=33%  Similarity=0.533  Sum_probs=308.6

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      +||+||||||+||++|+.|++++  .|++|+|+||.+...        ....+++..++++++++|+.+|+++.+.....
T Consensus         2 ~dv~IvGaG~aGl~~A~~L~~~g--~g~~v~liE~~~~~~--------~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~   71 (403)
T PRK07333          2 CDVVIAGGGYVGLALAVALKQAA--PHLPVTVVDAAPAGA--------WSRDPRASAIAAAARRMLEALGVWDEIAPEAQ   71 (403)
T ss_pred             CCEEEECccHHHHHHHHHHhcCC--CCCEEEEEeCCCccc--------CCCCcceEEecHHHHHHHHHCCChhhhhhhcC
Confidence            79999999999999999999972  149999999997541        12346799999999999999999999987655


Q ss_pred             cccceEEEEeCCCccc-----eeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccC
Q 010200          136 AYFDKMQVWDYTGLGY-----TKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVD  210 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~  210 (515)
                       +...+.+++..+...     ..+..........++.++|..+.+.|.+.+.+.| ++++++++|++++.          
T Consensus        72 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g-v~v~~~~~v~~i~~----------  139 (403)
T PRK07333         72 -PITDMVITDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALG-IDLREATSVTDFET----------  139 (403)
T ss_pred             -cccEEEEEeCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCC-CEEEcCCEEEEEEE----------
Confidence             667777776432211     2222112223445678999999999999999887 99999999999976          


Q ss_pred             CCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC-ceEEEEecCCC
Q 010200          211 STPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAG  289 (515)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g  289 (515)
                                ....+.+++++|+++.+|+||+|||.+|.+|+.++.......|...++++.+....+. ...++.+.+++
T Consensus       140 ----------~~~~v~v~~~~g~~~~ad~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  209 (403)
T PRK07333        140 ----------RDEGVTVTLSDGSVLEARLLVAADGARSKLRELAGIKTVGWDYGQSGIVCTVEHERPHGGRAEEHFLPAG  209 (403)
T ss_pred             ----------cCCEEEEEECCCCEEEeCEEEEcCCCChHHHHHcCCCcccccCCCEEEEEEEEcCCCCCCEEEEEeCCCC
Confidence                      3456788888888999999999999999999999887766777877777777655433 45667778999


Q ss_pred             cEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCc
Q 010200          290 PIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPP  369 (515)
Q Consensus       290 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  369 (515)
                      +++++|++++..+++|.............+.+.+...+.+.|. .|.+.                               
T Consensus       210 ~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~-------------------------------  257 (403)
T PRK07333        210 PFAILPLKGNRSSLVWTERTADAERLVALDDLVFEAELEQRFG-HRLGE-------------------------------  257 (403)
T ss_pred             ceEEeECCCCCeEEEEECCHHHHHHHHCCCHHHHHHHHHHHhh-hhcCc-------------------------------
Confidence            9999999999988888765443333334455666666766554 11111                               


Q ss_pred             ceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHH
Q 010200          370 RVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA  449 (515)
Q Consensus       370 ~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~  449 (515)
                        +........||+....+++|..++|+|||||||.++|+.|||+|+||+||..|+++|...+..+.+.....+|+.|++
T Consensus       258 --~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Ye~  335 (403)
T PRK07333        258 --LKVLGKRRAFPLGLTLARSFVAPRFALVGDAAHGIHPIAGQGLNLGLKDVAALAEVVVEAARLGLDIGSLDVLERYQR  335 (403)
T ss_pred             --eEeccCccEeechhhhhhhccCCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence              011112224666666788999999999999999999999999999999999999999988764433345899999999


Q ss_pred             HhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhcCC-CCCCCC
Q 010200          450 ERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ-RLPLPL  511 (515)
Q Consensus       450 ~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~  511 (515)
                      +|+++...++..++.+.++|+.++++...+|+..+..+..+|++++.++++.+|+. ..|-..
T Consensus       336 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  398 (403)
T PRK07333        336 WRRFDTVRMGVTTDVLNRLFSNDSTLLRSVRDIGLGLVDRLPKLKSFFIRQAAGLTGDTPRLL  398 (403)
T ss_pred             HHhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHhCcCCCCchhh
Confidence            99999999999999999999999999999999999999999999999999999976 355443

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=100.00  E-value=2.5e-48  Score=397.39  Aligned_cols=388  Identities=32%  Similarity=0.596  Sum_probs=309.5

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhh
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (515)
                      ...+||+||||||+|+++|+.|++.    |++|+|||+.+......    ......+...+++++.++|+.+|+++.+.+
T Consensus         3 ~~~~dViIvGgG~aGl~~A~~La~~----G~~V~liE~~~~~~~~~----~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~   74 (391)
T PRK08020          3 NQPTDIAIVGGGMVGAALALGLAQH----GFSVAVLEHAAPAPFDA----DSQPDVRISAISAASVALLKGLGVWDAVQA   74 (391)
T ss_pred             cccccEEEECcCHHHHHHHHHHhcC----CCEEEEEcCCCCCcccc----cCCCCceEEeccHHHHHHHHHcCChhhhhh
Confidence            3569999999999999999999996    99999999986432111    112345678999999999999999999887


Q ss_pred             hhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCC
Q 010200          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (515)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~  212 (515)
                      ....++..+..+..... .+.+.......+..++.++|..|.+.|.+.+.+..+++++++++|++++.            
T Consensus        75 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~------------  141 (391)
T PRK08020         75 MRSHPYRRLETWEWETA-HVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQR------------  141 (391)
T ss_pred             hhCcccceEEEEeCCCC-eEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEE------------
Confidence            54445566665544332 23333222333455788999999999999998874499999999999976            


Q ss_pred             CCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC-ceEEEEecCCCcE
Q 010200          213 PSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPI  291 (515)
Q Consensus       213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~  291 (515)
                              .++.+.+.+++|+++++|+||+|||.+|.+|+.++.......|...++.+.++.+.+. ...++.+.++++.
T Consensus       142 --------~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  213 (391)
T PRK08020        142 --------DDDGWELTLADGEEIQAKLVIGADGANSQVRQMAGIGVHGWQYRQSCMLISVKCENPPGDSTWQQFTPSGPR  213 (391)
T ss_pred             --------cCCeEEEEECCCCEEEeCEEEEeCCCCchhHHHcCCCccccCCCceEEEEEEEecCCCCCEEEEEEcCCCCE
Confidence                    3355788888888999999999999999999999887777778888888888766543 5667788888999


Q ss_pred             EEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCcce
Q 010200          292 ALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRV  371 (515)
Q Consensus       292 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  371 (515)
                      .++|+.++..+++|+..+.........+.+.+.+.+.+.++    +.               ++              .+
T Consensus       214 ~~~p~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~---------------~~--------------~~  260 (391)
T PRK08020        214 AFLPLFDNWASLVWYDSPARIRQLQAMSMAQLQQEIAAHFP----AR---------------LG--------------AV  260 (391)
T ss_pred             EEeECCCCcEEEEEECCHHHHHHHHCCCHHHHHHHHHHHhh----hh---------------cc--------------ce
Confidence            99999988888888876544334445566777777766443    11               00              01


Q ss_pred             EEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHHHh
Q 010200          372 VKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAER  451 (515)
Q Consensus       372 ~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~~r  451 (515)
                      ...  ....||+....+++|..++++|+|||||.++|+.|||+|+||+||..|+++|.+....+.++....+|+.|++.|
T Consensus       261 ~~~--~~~~~pl~~~~~~~~~~~rv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R  338 (391)
T PRK08020        261 TPV--AAGAFPLTRRHALQYVQPGLALVGDAAHTINPLAGQGVNLGYRDVDALLDVLVNARSYGEAWASEAVLKRYQRRR  338 (391)
T ss_pred             Eec--cccEeecceeehhhhccCcEEEEechhhccCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence            111  223478877778899999999999999999999999999999999999999998766555665678999999999


Q ss_pred             hHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhcC
Q 010200          452 KPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGE  504 (515)
Q Consensus       452 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~  504 (515)
                      +++...++..++.+.++|+.+.+++..+|+.+|..++.+|++|+.++++++|+
T Consensus       339 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~g~  391 (391)
T PRK08020        339 MADNLLMQSGMDLFYAGFSNNLPPLRFARNLGLMAAQRAGVLKRQALKYALGL  391 (391)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999984

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=100.00  E-value=2.1e-48  Score=397.51  Aligned_cols=381  Identities=29%  Similarity=0.501  Sum_probs=310.5

Q ss_pred             CCCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhh
Q 010200           51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYV  130 (515)
Q Consensus        51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~  130 (515)
                      ++++.+||+||||||+|+++|+.|++.    |++|+|||+.+.+.           ..++..+.+++.++|+++|+++.+
T Consensus         3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~----G~~v~liE~~~~~~-----------~~r~~~l~~~s~~~l~~lgl~~~~   67 (388)
T PRK07494          3 MEKEHTDIAVIGGGPAGLAAAIALARA----GASVALVAPEPPYA-----------DLRTTALLGPSIRFLERLGLWARL   67 (388)
T ss_pred             CCCCCCCEEEECcCHHHHHHHHHHhcC----CCeEEEEeCCCCCC-----------CcchhhCcHHHHHHHHHhCchhhh
Confidence            345678999999999999999999996    99999999987541           234567888999999999999999


Q ss_pred             hhhhccccceEEEEeCCCccc----eeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCC
Q 010200          131 QQHRHAYFDKMQVWDYTGLGY----TKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSS  206 (515)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~  206 (515)
                      .+... ++..+.+++..+...    ..+..........++.+++..+.+.|.+.+.+.+++. +++++|++++.      
T Consensus        68 ~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~------  139 (388)
T PRK07494         68 APHAA-PLQSMRIVDATGRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRP------  139 (388)
T ss_pred             Hhhcc-eeeEEEEEeCCCCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEE------
Confidence            87554 677888887544221    2232222233456789999999999999999887566 88999999976      


Q ss_pred             cccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC-ceEEEEe
Q 010200          207 ISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRF  285 (515)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  285 (515)
                                    .++.+++++++|+++.+|+||+|||.+|.+|+.++.......|+..++.+.+....+. ...++.+
T Consensus       140 --------------~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  205 (388)
T PRK07494        140 --------------REDEVTVTLADGTTLSARLVVGADGRNSPVREAAGIGVRTWSYPQKALVLNFTHSRPHQNVSTEFH  205 (388)
T ss_pred             --------------cCCeEEEEECCCCEEEEeEEEEecCCCchhHHhcCCCceecCCCCEEEEEEEeccCCCCCEEEEEe
Confidence                          3456788888888999999999999999999999888777888888888888765444 3346677


Q ss_pred             cCCCcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccc
Q 010200          286 LPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECF  365 (515)
Q Consensus       286 ~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (515)
                      .+.|+++++|++++..+++|....+........+.+.+.+.+.+.+.                   ++++.         
T Consensus       206 ~~~g~~~~~Pl~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~l~~---------  257 (388)
T PRK07494        206 TEGGPFTQVPLPGRRSSLVWVVRPAEAERLLALSDAALSAAIEERMQ-------------------SMLGK---------  257 (388)
T ss_pred             CCCCcEEEEECCCCcEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHh-------------------hhcCC---------
Confidence            78999999999988889999987766555566777888887776443                   11110         


Q ss_pred             cCCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHH
Q 010200          366 EVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLK  445 (515)
Q Consensus       366 ~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~  445 (515)
                            .........||+.....++|..++|+|+|||||.++|+.|||+|+||+||..|++.|....   .+.....+|+
T Consensus       258 ------~~~~~~~~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~---~~~~~~~~L~  328 (388)
T PRK07494        258 ------LTLEPGRQAWPLSGQVAHRFAAGRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVEDRP---EDPGSAAVLA  328 (388)
T ss_pred             ------eEEccCCcEeechHHHHHhhccCceEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHhcC---CCcchHHHHH
Confidence                  1122233458888777889999999999999999999999999999999999999998732   2334578999


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhcCC
Q 010200          446 KYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ  505 (515)
Q Consensus       446 ~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~  505 (515)
                      .|+++|+++...++..++.+.++|....++...+|+..|.+++.+|++++.++++++|.+
T Consensus       329 ~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~  388 (388)
T PRK07494        329 AYDRARRPDILSRTASVDLLNRSLLSDFLPVQDLRAAGLHLLYSFGPLRRLFMREGLGPG  388 (388)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhCHHHHHHHHHHhcCCC
Confidence            999999999999999999999999999999999999999999999999999999999975

>PRK06996 hypothetical protein; Provisional

Probab=100.00  E-value=6.2e-48  Score=394.48  Aligned_cols=379  Identities=30%  Similarity=0.471  Sum_probs=304.2

Q ss_pred             CCCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhh
Q 010200           51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYV  130 (515)
Q Consensus        51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~  130 (515)
                      +.++.+||+||||||+|+++|+.|++.|..+|++|+|+|+.+.+.        .....+++.+++.++++|+.+|+|+..
T Consensus         7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~--------~~~~~r~~~l~~~~~~~L~~lg~~~~~   78 (398)
T PRK06996          7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAA--------SANDPRAIALSHGSRVLLETLGAWPAD   78 (398)
T ss_pred             ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCc--------CCCCceEEEecHHHHHHHHhCCCchhc
Confidence            445678999999999999999999997321246899999986441        123467999999999999999998863


Q ss_pred             hhhhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccC
Q 010200          131 QQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVD  210 (515)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~  210 (515)
                      .    .++..+.+++........+.......+..++.++|..|.+.|.+.+.+.| +++++++++++++.          
T Consensus        79 ~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g-~~~~~~~~v~~~~~----------  143 (398)
T PRK06996         79 A----TPIEHIHVSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTP-VRWLTSTTAHAPAQ----------  143 (398)
T ss_pred             C----CcccEEEEecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCC-CEEEcCCeeeeeee----------
Confidence            2    25666777654333334444444444556889999999999999999988 89999999999965          


Q ss_pred             CCCCcccccccCCeeEEEcCCC---cEEEeeEEEEecCC-CchhhhhcCCccccccCCceEEEEEEEeecCC-ceEEEEe
Q 010200          211 STPSATTLFTKGHLAKLDLSDG---TSLYAKLVVGADGG-KSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRF  285 (515)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~~~g---~~~~ad~vV~AdG~-~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  285 (515)
                                ....+++++.++   ++++||+||+|||. +|.+|+.++.......|...++++.++...+. ...++.+
T Consensus       144 ----------~~~~v~v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  213 (398)
T PRK06996        144 ----------DADGVTLALGTPQGARTLRARIAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVSAPRPGWAWERF  213 (398)
T ss_pred             ----------cCCeEEEEECCCCcceEEeeeEEEECCCCCchHHHHHcCCCceeeecCCeEEEEEEEccCCCCCEEEEEe
Confidence                      446688888754   58999999999997 58889999888888899999999988876443 4567778


Q ss_pred             cCCCcEEEEecCCCc---eEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCcccccc
Q 010200          286 LPAGPIALLPIGDNF---SNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAK  362 (515)
Q Consensus       286 ~~~g~~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (515)
                      .+.|++.++|++++.   ++++|...++........+.+.+.+.+.+.|. .+.+.                        
T Consensus       214 ~~~G~~~~lp~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~------------------------  268 (398)
T PRK06996        214 THEGPLALLPLGGPRQADYALVWCCAPDEAARRAALPDDAFLAELGAAFG-TRMGR------------------------  268 (398)
T ss_pred             cCCCCeEEeECCCCCCCcEEEEEECCHHHHHHHHcCCHHHHHHHHHHHhc-cccCc------------------------
Confidence            899999999998654   77888877655544556777888888887654 11000                        


Q ss_pred             ccccCCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHH
Q 010200          363 ECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEAS  442 (515)
Q Consensus       363 ~~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~  442 (515)
                              +.. ......||+....+++|..+||+|+|||||+++|+.|||+|+||+||..|+++|...   + +  ...
T Consensus       269 --------~~~-~~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~---~-~--~~~  333 (398)
T PRK06996        269 --------FTR-IAGRHAFPLGLNAARTLVNGRIAAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSDH---G-A--TPL  333 (398)
T ss_pred             --------eEE-ecceEEEeeecccccceecCCEEEEEhhhccCCcccchhHHHHHHHHHHHHHHHHhc---C-C--cHH
Confidence                    111 122235788877788999999999999999999999999999999999999999752   2 2  267


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhh
Q 010200          443 LLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYAS  502 (515)
Q Consensus       443 al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~  502 (515)
                      +|+.|+++|+++...++..++.+.++|+..+++...+|+.++.+++.+|++|+.++++++
T Consensus       334 ~L~~Y~~~R~~~~~~~~~~s~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~  393 (398)
T PRK06996        334 ALATFAARRALDRRVTIGATDLLPRLFTVDSRPLAHLRGAALTALEFVPPLKHALARQMM  393 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHhHHHHHHhhCHHHHHHHHHHHc
Confidence            899999999999999999999999999999999999999999999999999999999998

>PRK09126 hypothetical protein; Provisional

Probab=100.00  E-value=7.1e-48  Score=394.34  Aligned_cols=389  Identities=27%  Similarity=0.452  Sum_probs=305.1

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      +++||+||||||+|+++|+.|++.    |++|+|+||.+.++..     .....++++.++++++++|+++|+++.+...
T Consensus         2 ~~~dviIvGgG~aGl~~A~~L~~~----G~~v~v~E~~~~~~~~-----~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~   72 (392)
T PRK09126          2 MHSDIVVVGAGPAGLSFARSLAGS----GLKVTLIERQPLAALA-----DPAFDGREIALTHASREILQRLGAWDRIPED   72 (392)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhC----CCcEEEEeCCCccccc-----CCCCchhHHHhhHHHHHHHHHCCChhhhccc
Confidence            368999999999999999999996    9999999999875211     0122355678899999999999999988776


Q ss_pred             hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (515)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~  213 (515)
                      ...+...+.+++......+.++.........++.++|..+.+.|.+.+.+..+++|+++++|++++.             
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~-------------  139 (392)
T PRK09126         73 EISPLRDAKVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRT-------------  139 (392)
T ss_pred             cCCccceEEEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEE-------------
Confidence            5546667777765544344444322333456788999999999999987654499999999999976             


Q ss_pred             CcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC-ceEEEEecCCCcEE
Q 010200          214 SATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIA  292 (515)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~  292 (515)
                             .+..++|++++|+++.+|+||+|||.+|.+|+.+++......++...+...+....+. ...+.++.++++++
T Consensus       140 -------~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (392)
T PRK09126        140 -------DDDGAQVTLANGRRLTARLLVAADSRFSATRRQLGIGADMHDFGRTMLVCRMRHELPHHHTAWEWFGYGQTLA  212 (392)
T ss_pred             -------cCCeEEEEEcCCCEEEeCEEEEeCCCCchhhHhcCCCccccccCCeEEEEEEeccCCCCCEEEEEecCCCCeE
Confidence                   3345778888898999999999999999999999877665666666666555543332 34456666778899


Q ss_pred             EEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCcceE
Q 010200          293 LLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVV  372 (515)
Q Consensus       293 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  372 (515)
                      ++|+.++..++++..+.+........+.+.+.+++.+.|...+..                                  .
T Consensus       213 ~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------------------------------~  258 (392)
T PRK09126        213 LLPLNGHLSSLVLTLPPDQIEALLALDPEAFAAEVTARFKGRLGA----------------------------------M  258 (392)
T ss_pred             EeECCCCCEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhccC----------------------------------e
Confidence            999999988888877655433444556777777776655411100                                  0


Q ss_pred             EeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHHHhh
Q 010200          373 KLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERK  452 (515)
Q Consensus       373 ~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~~r~  452 (515)
                      ........+|+.....++|..++|+|+|||||+++|+.|||+|+||+||..|+++|...++.+.+....++|+.|+++|+
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~ai~da~~la~~L~~~~~~~~~~~~~~~l~~Y~~~r~  338 (392)
T PRK09126        259 RLVSSRHAYPLVAVYAHRFVAKRFALIGDAAVGMHPVTAHGFNLGLKGQDILARLILAAARRGQDIGAASLLERYERKHR  338 (392)
T ss_pred             EEcCCCcEeechHHHHHHHhhcceEEEehhhhcCCCcccchhhhhHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence            11122234676666678899999999999999999999999999999999999999988765444445789999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhcCC
Q 010200          453 PANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ  505 (515)
Q Consensus       453 ~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~  505 (515)
                      +++..++..++.+.++++.++++...+|+.++..+..+|++++.+++.+.|..
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  391 (392)
T PRK09126        339 LATRPLYHATNAIAALYTDDRPPARLLRRAVLRAANRFPPLKQAIAKQLTGRK  391 (392)
T ss_pred             HHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhChHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999864

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=100.00  E-value=3.7e-47  Score=388.33  Aligned_cols=384  Identities=40%  Similarity=0.713  Sum_probs=306.5

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhcc
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHA  136 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~  136 (515)
                      ||+||||||+||++|+.|++.    |++|+||||.+.++..++     ...++++.+++++.++|+++|+++.+.+....
T Consensus         1 dViIvGaG~aGl~~A~~L~~~----G~~v~v~Er~~~~~~~~~-----~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~   71 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARS----GLKIALIEATPAEAAATP-----GFDNRVSALSAASIRLLEKLGVWDKIEPDRAQ   71 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcC----CCEEEEEeCCCccccCCC-----CCCcceeecCHHHHHHHHHCCchhhhhhhcCC
Confidence            799999999999999999996    999999999998753322     12457899999999999999999999873444


Q ss_pred             ccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcc
Q 010200          137 YFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSAT  216 (515)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~  216 (515)
                      +...+.+++..+.....+..........++.++|..|.+.|.+.+.+.|+++++++++|++++.                
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~----------------  135 (385)
T TIGR01988        72 PIRDIHVSDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPR----------------  135 (385)
T ss_pred             CceEEEEEeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEe----------------
Confidence            6777888876554444444322233445788999999999999999887799999999999976                


Q ss_pred             cccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC-ceEEEEecCCCcEEEEe
Q 010200          217 TLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALLP  295 (515)
Q Consensus       217 ~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~p  295 (515)
                          ..+.+.+.+++|+++.+|+||+|||.+|.+|+.++.+.....+...+++..+....+. ...+..+.++++++++|
T Consensus       136 ----~~~~~~v~~~~g~~~~~~~vi~adG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p  211 (385)
T TIGR01988       136 ----HSDHVELTLDDGQQLRARLLVGADGANSKVRQLAGIPTTGWDYGQSAVVANVKHERPHQGTAWERFTPTGPLALLP  211 (385)
T ss_pred             ----cCCeeEEEECCCCEEEeeEEEEeCCCCCHHHHHcCCCccccccCCeEEEEEEEecCCCCCEEEEEecCCCCEEEeE
Confidence                3356788888998999999999999999999999876655566666666666654433 34445667889999999


Q ss_pred             cCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCcceEEec
Q 010200          296 IGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLA  375 (515)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  375 (515)
                      ++++..++.|....+........+.+++...+.+.+. .+.+.                                 ....
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---------------------------------~~~~  257 (385)
T TIGR01988       212 LPDNRSSLVWTLPPEEAERLLALSDEEFLAELQRAFG-SRLGA---------------------------------ITLV  257 (385)
T ss_pred             CCCCCeEEEEECCHHHHHHHHcCCHHHHHHHHHHHHh-hhcCc---------------------------------eEec
Confidence            9999988888876543333344567777777777554 11110                                 0111


Q ss_pred             cceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHHHhhHHH
Q 010200          376 SERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPAN  455 (515)
Q Consensus       376 ~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~~r~~~~  455 (515)
                      .....+|+.....++|..++|+|+|||||+|+|+.|||+|+||+||..|++.|...+..+.+.....+|+.|++.|++++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~v~LiGDAah~~~P~~G~G~~~Ai~da~~La~~L~~~~~~~~~~~~~~~l~~y~~~r~~~~  337 (385)
T TIGR01988       258 GERHAFPLSLTHAKRYVAPRLALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARRRGEDIGSPRVLQRYERRRRFDN  337 (385)
T ss_pred             cCcceeechhhhhhheecCceEEEecccccCCccccchhhhhHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHH
Confidence            12234677666678899999999999999999999999999999999999999987764434444789999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhc
Q 010200          456 IVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASG  503 (515)
Q Consensus       456 ~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g  503 (515)
                      ..++..++.+.+++...+++...+|+..++.+..+|.+++.+.+.++|
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~  385 (385)
T TIGR01988       338 AAMLGATDGLNRLFSNDFPPLRLLRNLGLRLLNLLPPLKNFIARYAMG  385 (385)
T ss_pred             HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhCHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999998875

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=100.00  E-value=3.6e-46  Score=380.49  Aligned_cols=379  Identities=32%  Similarity=0.545  Sum_probs=296.6

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCC-cEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G-~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      ||+||||||+|+++|+.|+++    | ++|+||||.+.+....      ...+++..++++++++|+++|+++.+.+...
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~----G~~~v~v~E~~~~~~~~~------~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~   70 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRL----GKIKIALIEANSPSAAQP------GFDARSLALSYGSKQILEKLGLWPKLAPFAT   70 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcC----CCceEEEEeCCCccccCC------CCCCeeEeccHHHHHHHHHCCChhhhHhhcC
Confidence            799999999999999999996    9 9999999998774221      1235689999999999999999998877554


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                       ....+.+++........+..........++.++|..|.+.|.+.+.+..+++++++++|++++.               
T Consensus        71 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~---------------  134 (382)
T TIGR01984        71 -PILDIHVSDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIR---------------  134 (382)
T ss_pred             -ccceEEEEcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEE---------------
Confidence             4556666544332333333222333445688999999999999998853399999999999976               


Q ss_pred             ccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC-ceEEEEecCCCcEEEE
Q 010200          216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALL  294 (515)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~  294 (515)
                           .+..+++++++|+++.||+||+|||.+|.+|+.++.......++..++...++...+. ...+..+.++++++++
T Consensus       135 -----~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  209 (382)
T TIGR01984       135 -----NQDYVRVTLDNGQQLRAKLLIAADGANSKVRELLSIPTEEHDYNQTALIANIRHEQPHQGCAFERFTPHGPLALL  209 (382)
T ss_pred             -----cCCeEEEEECCCCEEEeeEEEEecCCChHHHHHcCCCCcccccCCEEEEEEEEecCCCCCEEEEeeCCCCCeEEC
Confidence                 3355788888888999999999999999999999877666667777777766654333 3345566788899999


Q ss_pred             ecCCC-ceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCcceEE
Q 010200          295 PIGDN-FSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVK  373 (515)
Q Consensus       295 p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  373 (515)
                      |.+++ ...++|..+.+........+.+.+.+.+.+.+.    +.           +..                  +. 
T Consensus       210 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----------~~~------------------~~-  255 (382)
T TIGR01984       210 PLKDNYRSSLVWCLPSKQADTIANLPDAEFLAELQQAFG----WR-----------LGK------------------IT-  255 (382)
T ss_pred             cCCCCCCEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHh----hh-----------ccC------------------eE-
Confidence            99988 777888776544433445566677777766543    00           000                  01 


Q ss_pred             eccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHHHhhH
Q 010200          374 LASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKP  453 (515)
Q Consensus       374 ~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~~r~~  453 (515)
                      .......||+.....++|..++|+|+|||||+++|+.|||+|+||+||..|+++|.....   +.....+|+.|+++|++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~---~~~~~~~l~~Y~~~r~~  332 (382)
T TIGR01984       256 QVGERKTYPLKLRIAETHVHPRVVLIGNAAQTLHPIAGQGFNLGLRDVETLAEVLIDARI---DLGTYALLQEYLRRRQF  332 (382)
T ss_pred             EcCCccEeecchhhhhheecCCEEEEeecccccCCccccchhhhHHHHHHHHHHHHHhcc---CccCHHHHHHHHHHHHH
Confidence            111223467776677889999999999999999999999999999999999999987642   33347899999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhc
Q 010200          454 ANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASG  503 (515)
Q Consensus       454 ~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g  503 (515)
                      +...++..++.+..+|..++++...+|+..++++..+|.+++.++++.+|
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~p~~~~~~~~~~~~  382 (382)
T TIGR01984       333 DQFITIGLTDGLNRLFSNHIPLLRALRNLGLLALENFPPLKKRLARQAMG  382 (382)
T ss_pred             HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHhcC
Confidence            99999999999999999998899999999999999999999999998775

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=100.00  E-value=7.6e-46  Score=379.84  Aligned_cols=390  Identities=28%  Similarity=0.494  Sum_probs=300.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      +.+||+||||||+|+++|+.|++++ .+|++|+||||.......     .....++++.++++++++|+.+|+++.+.+.
T Consensus         2 ~~~dv~IvGaG~aGl~~A~~L~~~~-~~G~~v~v~E~~~~~~~~-----~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~   75 (395)
T PRK05732          2 SRMDVIIVGGGMAGATLALALSRLS-HGGLPVALIEAFAPESDA-----HPGFDARAIALAAGTCQQLARLGVWQALADC   75 (395)
T ss_pred             CcCCEEEECcCHHHHHHHHHhhhcc-cCCCEEEEEeCCCccccc-----CCCCCccceeccHHHHHHHHHCCChhhhHhh
Confidence            5689999999999999999999830 028999999996422111     1123456899999999999999999998876


Q ss_pred             hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (515)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~  213 (515)
                      .. +...+.+.+........+..........++.++|..+.+.|.+.+.+.++++++++++|++++.             
T Consensus        76 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~-------------  141 (395)
T PRK05732         76 AT-PITHIHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVER-------------  141 (395)
T ss_pred             cC-CccEEEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEE-------------
Confidence            54 5556655543322222222222223344678999999999999988765599999999999975             


Q ss_pred             CcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC-ceEEEEecCCCcEE
Q 010200          214 SATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIA  292 (515)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~  292 (515)
                             .++.+.+++++|.++.+|+||+|||.+|.+|+.++.......+...++...+...... ...+..+.+.++++
T Consensus       142 -------~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  214 (395)
T PRK05732        142 -------TQGSVRVTLDDGETLTGRLLVAADGSHSALREALGIDWQQHPYEQVAVIANVTTSEAHQGRAFERFTEHGPLA  214 (395)
T ss_pred             -------cCCeEEEEECCCCEEEeCEEEEecCCChhhHHhhCCCccceecCCEEEEEEEEecCCCCCEEEEeecCCCCEE
Confidence                   3456788888888899999999999999999999877666667777777766654332 34455667888999


Q ss_pred             EEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCcceE
Q 010200          293 LLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVV  372 (515)
Q Consensus       293 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  372 (515)
                      ++|.+++...++|..+.+........+.+.+.+.+.+.+.  |...                               .+.
T Consensus       215 ~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------------------------------~~~  261 (395)
T PRK05732        215 LLPMSDGRCSLVWCHPLEDAEEVLSWSDAQFLAELQQAFG--WRLG-------------------------------RIT  261 (395)
T ss_pred             EeECCCCCeEEEEECCHHHHHHHHcCCHHHHHHHHHHHHH--hhhc-------------------------------cee
Confidence            9999999988888876554444445566677777766542  1100                               000


Q ss_pred             EeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHHHhh
Q 010200          373 KLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERK  452 (515)
Q Consensus       373 ~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~~r~  452 (515)
                      . ......|++.....++|..++|+|+|||||.++|+.|||+|+||+||..|+++|...++...+.....+|+.|+++|+
T Consensus       262 ~-~~~~~~~~l~~~~~~~~~~grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~  340 (395)
T PRK05732        262 H-AGKRSAYPLALVTAAQQISHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTQALARGEDIGDYAVLQRYQQRRQ  340 (395)
T ss_pred             e-cCCcceecccccchhhhccCcEEEEeecccccCCccccccchHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            0 111224666666678899999999999999999999999999999999999999887765444434689999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhcC
Q 010200          453 PANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGE  504 (515)
Q Consensus       453 ~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~  504 (515)
                      ++...++..++.+.++|..++++...+|+.++..+..+|++++.++++.+|.
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~  392 (395)
T PRK05732        341 QDREATIGFTDGLVRLFANRWAPLVVGRNLGLMAMDLLPPARDWLARRTLGW  392 (395)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHccCHHHHHHHHHHHhcc
Confidence            9999999999999999999989999999999999999999999999999986

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=100.00  E-value=1.5e-45  Score=376.72  Aligned_cols=384  Identities=30%  Similarity=0.497  Sum_probs=298.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      +++||+||||||+||++|+.|++.    |++|+|+||.+.+...++     ....+.+.++++++++|+.+|+++.+...
T Consensus         4 ~~~dv~IvGgG~aGl~~A~~L~~~----G~~v~v~E~~~~~~~~~~-----~~~~r~~~l~~~~~~~l~~~g~~~~~~~~   74 (388)
T PRK07608          4 MKFDVVVVGGGLVGASLALALAQS----GLRVALLAPRAPPRPADD-----AWDSRVYAISPSSQAFLERLGVWQALDAA   74 (388)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhC----CCeEEEEecCCCccccCC-----CCCCceEeecHHHHHHHHHcCchhhhhhh
Confidence            468999999999999999999996    999999999987643222     12356789999999999999999988655


Q ss_pred             hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (515)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~  213 (515)
                      ...+...+.++.... ..+.+.......+...+.+++..+.+.|.+.+.+.|+++++ +++|++++.             
T Consensus        75 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~-------------  139 (388)
T PRK07608         75 RLAPVYDMRVFGDAH-ARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEV-------------  139 (388)
T ss_pred             cCCcceEEEEEECCC-ceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEe-------------
Confidence            544566777665432 23333222222334457899999999999999988768888 999999975             


Q ss_pred             CcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC-ceEEEEecCCCcEE
Q 010200          214 SATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIA  292 (515)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~  292 (515)
                             .++.+.+++.+|.++.+|+||+|||.+|.+|+.++.......+...++...++.+... ...+.++.++++++
T Consensus       140 -------~~~~~~v~~~~g~~~~a~~vI~adG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (388)
T PRK07608        140 -------DPDAATLTLADGQVLRADLVVGADGAHSWVRSQAGIKAERRPYRQTGVVANFKAERPHRGTAYQWFRDDGILA  212 (388)
T ss_pred             -------cCCeEEEEECCCCEEEeeEEEEeCCCCchHHHhcCCCccccccCCEEEEEEEEecCCCCCEEEEEecCCCCEE
Confidence                   3355788888888899999999999999999999877666666666666666655433 34566677889999


Q ss_pred             EEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCcceE
Q 010200          293 LLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVV  372 (515)
Q Consensus       293 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  372 (515)
                      ++|++++...+.|.............+++.+.+.+...+..    .               ++              . .
T Consensus       213 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---------------~~--------------~-~  258 (388)
T PRK07608        213 LLPLPDGHVSMVWSARTAHADELLALSPEALAARVERASGG----R---------------LG--------------R-L  258 (388)
T ss_pred             EeECCCCCeEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHH----h---------------cC--------------C-c
Confidence            99999998888887654443333445666777766654320    0               00              0 1


Q ss_pred             EeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHHHhh
Q 010200          373 KLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERK  452 (515)
Q Consensus       373 ~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~~r~  452 (515)
                      ........+|+.....+.|..++|+|||||||+|+|+.|||+|+||+||..|+++|......+ +....++|+.|+++|+
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~rv~liGDAAh~~~P~~GqG~n~ai~da~~La~~L~~~~~~~-~~~~~~~l~~Ye~~R~  337 (388)
T PRK07608        259 ECVTPAAGFPLRLQRVDRLVAPRVALVGDAAHLIHPLAGQGMNLGLRDVAALADVLAGREPFR-DLGDLRLLRRYERARR  337 (388)
T ss_pred             eecCCcceeecchhhhhhhhcCceEEEeccccccCCccccccchhHHHHHHHHHHHHHhhccC-CCccHHHHHHHHHHHH
Confidence            111122236666667788999999999999999999999999999999999999998764222 3334689999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhc
Q 010200          453 PANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASG  503 (515)
Q Consensus       453 ~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g  503 (515)
                      +++..++..++.+..+++.++.+...+|+.+++.+..+|.+++.++++.+|
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~  388 (388)
T PRK07608        338 EDILALQVATDGLQRLFALPGPLARWLRNAGMALVGALPLVKRWLVRHALG  388 (388)
T ss_pred             HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhChHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999876

>PRK06185 hypothetical protein; Provisional

Probab=100.00  E-value=1.7e-46  Score=386.00  Aligned_cols=384  Identities=18%  Similarity=0.223  Sum_probs=297.8

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhh
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQ  131 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~  131 (515)
                      +...+||+||||||+|+++|+.|++.    |++|+|+|+.+...          ...++..+++.+.++|+.+|+++.+.
T Consensus         3 ~~~~~dV~IvGgG~~Gl~~A~~La~~----G~~v~liE~~~~~~----------~~~r~~~l~~~s~~~L~~lG~~~~~~   68 (407)
T PRK06185          3 EVETTDCCIVGGGPAGMMLGLLLARA----GVDVTVLEKHADFL----------RDFRGDTVHPSTLELMDELGLLERFL   68 (407)
T ss_pred             ccccccEEEECCCHHHHHHHHHHHhC----CCcEEEEecCCccC----------ccccCceeChhHHHHHHHcCChhHHh
Confidence            34579999999999999999999996    99999999987541          23457889999999999999999987


Q ss_pred             hhhccccceEEEEeCCCc-cceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccC
Q 010200          132 QHRHAYFDKMQVWDYTGL-GYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVD  210 (515)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~  210 (515)
                      +....++..+.++..... ....+..... ....++.+.+..+.+.|.+.+.+.++++++++++|++++..         
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~---------  138 (407)
T PRK06185         69 ELPHQKVRTLRFEIGGRTVTLADFSRLPT-PYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEE---------  138 (407)
T ss_pred             hcccceeeeEEEEECCeEEEecchhhcCC-CCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEe---------
Confidence            755546677777754321 1222222121 23456789999999999999987755999999999999761         


Q ss_pred             CCCCcccccccCCeeEEEcCCCc-EEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC-ceEEEEecCC
Q 010200          211 STPSATTLFTKGHLAKLDLSDGT-SLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPA  288 (515)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~~~g~-~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  288 (515)
                        ++      ....+.+...+|+ ++++|+||+|||.+|.+|+.++......+|....+++.++..... ...++.+.++
T Consensus       139 --~~------~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (407)
T PRK06185        139 --GG------RVTGVRARTPDGPGEIRADLVVGADGRHSRVRALAGLEVREFGAPMDVLWFRLPREPDDPESLMGRFGPG  210 (407)
T ss_pred             --CC------EEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHcCCCccccCCCceeEEEecCCCCCCCcccceEecCC
Confidence              00      1112455555675 799999999999999999999888777777766666555443222 2456788899


Q ss_pred             CcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCC
Q 010200          289 GPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVP  368 (515)
Q Consensus       289 g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  368 (515)
                      ++++++|.+ +.++++|..+.+........+.+.+.+.+.+.++                .+...++.            
T Consensus       211 g~~~llP~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----------------~~~~~l~~------------  261 (407)
T PRK06185        211 QGLIMIDRG-DYWQCGYVIPKGGYAALRAAGLEAFRERVAELAP----------------ELADRVAE------------  261 (407)
T ss_pred             cEEEEEcCC-CeEEEEEEecCCCchhhhhhhHHHHHHHHHHhCc----------------cHHHHHhh------------
Confidence            999999997 7888999987766555555666777777766443                11111110            


Q ss_pred             cceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHH
Q 010200          369 PRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYE  448 (515)
Q Consensus       369 ~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~  448 (515)
                         .........||+....+++|..++++|+|||||+++|+.|||+|+||+||..|++.|.+.++.+ +. ...+|+.|+
T Consensus       262 ---~~~~~~~~~~~l~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~nlgl~Da~~La~~l~~~~~~~-~~-~~~~L~~Y~  336 (407)
T PRK06185        262 ---LKSWDDVKLLDVRVDRLRRWHRPGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPLRRG-RV-SDRDLAAVQ  336 (407)
T ss_pred             ---cCCccccEEEEEeccccccccCCCeEEEeccccccCcccccchhHHHHHHHHHHHHHHHHhccC-Cc-cHHHHHHHH
Confidence               1112234457877778889999999999999999999999999999999999999999987665 33 248999999


Q ss_pred             HHhhHHHHHHHHHHHHHHHhhcCCC--ChHHHHHHHHHHhcccChhHHHHHHHHh
Q 010200          449 AERKPANIVMMAVLDGFQKAYSVDF--GPLNILRAAAFHGAQYISPLKRNIISYA  501 (515)
Q Consensus       449 ~~r~~~~~~~~~~s~~~~~~~~~~~--~~~~~~r~~~~~~~~~~~~~~~~~~~~~  501 (515)
                      +.|+++...++..++.+.++|..+.  ++...+|+..|.+++++|++|+.+++++
T Consensus       337 ~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~  391 (407)
T PRK06185        337 RRREFPTRVTQALQRRIQRRLLAPALAGRGPLGPPLLLRLLNRLPWLRRLPARLV  391 (407)
T ss_pred             HHhhhHHHHHHHHHHHHHHhhccccccCccccCCchHHHHHHhChhHHHhhHHhe
Confidence            9999999999999999999999988  9999999999999999999999999874

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=100.00  E-value=9.6e-44  Score=376.64  Aligned_cols=378  Identities=23%  Similarity=0.347  Sum_probs=285.9

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhh
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (515)
                      +..+||+||||||+||++|+.|++.    |++|+||||.+.+          ...++++.++++++++|+++|+++.+.+
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~----G~~v~v~Er~~~~----------~~~~ra~~l~~~~~~~L~~lGl~~~l~~   73 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQY----GVRVLVLERWPTL----------YDLPRAVGIDDEALRVLQAIGLADEVLP   73 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHC----CCcEEEEecCCCC----------CCCCceeeeCHHHHHHHHHcCChhHHHh
Confidence            4568999999999999999999996    9999999999876          2345689999999999999999999988


Q ss_pred             hhccccceEEEEeCCCccceeeecccC--CCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccC
Q 010200          133 HRHAYFDKMQVWDYTGLGYTKYNARDV--NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVD  210 (515)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~  210 (515)
                      ... +...+.+++..+.....++....  ......+.+++..+++.|.+.+.+.++++|+++++|++++.          
T Consensus        74 ~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~----------  142 (538)
T PRK06183         74 HTT-PNHGMRFLDAKGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQ----------  142 (538)
T ss_pred             hcc-cCCceEEEcCCCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEE----------
Confidence            665 55667777655543334432111  11122356889999999999998875599999999999987          


Q ss_pred             CCCCcccccccCCeeEEEcC--CC--cEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC---ceEEE
Q 010200          211 STPSATTLFTKGHLAKLDLS--DG--TSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN---YCAWQ  283 (515)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~~--~g--~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  283 (515)
                                +++.++++++  +|  .++++|+||+|||.+|.||+.++.......+...++.+.+......   ...+.
T Consensus       143 ----------~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (538)
T PRK06183        143 ----------DDDGVTVTLTDADGQRETVRARYVVGCDGANSFVRRTLGVPFEDLTFPERWLVVDVLIANDPLGGPHTYQ  212 (538)
T ss_pred             ----------cCCeEEEEEEcCCCCEEEEEEEEEEecCCCchhHHHHcCCeeeCCCccceEEEEEEecccCccCCCceEE
Confidence                      3345777765  46  3799999999999999999999887776666666665554332221   34456


Q ss_pred             EecCCCcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccc
Q 010200          284 RFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKE  363 (515)
Q Consensus       284 ~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (515)
                      .+.+++++.++|++++...+.+...+..... ...+.+.+.+.+ .    .|...+.                       
T Consensus       213 ~~~~~~~~~~~p~~~~~~r~~~~~~~~~~~~-~~~~~~~~~~~l-~----~~~~~~~-----------------------  263 (538)
T PRK06183        213 YCDPARPYTSVRLPHGRRRWEFMLLPGETEE-QLASPENVWRLL-A----PWGPTPD-----------------------  263 (538)
T ss_pred             EECCCCCEEEEEcCCCeEEEEEEeCCCCChh-hcCCHHHHHHHH-H----hhCCCCc-----------------------
Confidence            6788899999999888877766654432211 111233333333 2    2211100                       


Q ss_pred             cccCCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHH
Q 010200          364 CFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASL  443 (515)
Q Consensus       364 ~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~a  443 (515)
                             ...+ .....|.+..+.+++|..|||+|+|||||.++|+.|||+|+||+||.+|+++|...++..   ....+
T Consensus       264 -------~~~~-~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GQG~n~gi~DA~~La~kLa~~~~g~---~~~~~  332 (538)
T PRK06183        264 -------DAEL-IRHAVYTFHARVADRWRSGRVLLAGDAAHLMPPFAGQGMNSGIRDAANLAWKLAAVLRGR---AGDAL  332 (538)
T ss_pred             -------ceEE-EEEEeeeEccEEhhhhccCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHcCC---CcHHH
Confidence                   0010 011235555556789999999999999999999999999999999999999998776432   23789


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhcCC
Q 010200          444 LKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ  505 (515)
Q Consensus       444 l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~  505 (515)
                      |+.|+++|++++..++..+..+.++++..++....+|+.++..+..+|.+++.++...+++.
T Consensus       333 L~~Ye~eR~p~~~~~~~~s~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~  394 (538)
T PRK06183        333 LDTYEQERRPHARAMIDLAVRLGRVICPTDRLAAALRDAVLRALNYLPPLKRYVLEMRFKPM  394 (538)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHhhhcCcchhhhhhhccCCCC
Confidence            99999999999999999999999999999999999999999999999999999998776643

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=100.00  E-value=2.1e-44  Score=342.46  Aligned_cols=434  Identities=34%  Similarity=0.578  Sum_probs=359.6

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      ..+||+||||||+|+++|..|...+-....+|.++|-...+.-+.+.. ......+...+++.+...++.+|+|+.+...
T Consensus        35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~-~~~f~Nrvss~s~~s~~~fk~~~awd~i~~~  113 (481)
T KOG3855|consen   35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKP-SETFSNRVSSISPASISLFKSIGAWDHIFHD  113 (481)
T ss_pred             ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCcccccccc-CccccceeecCCcchHHHHHhcCHHHHhhhh
Confidence            379999999999999999999987655668999999985543344322 2456677889999999999999999999999


Q ss_pred             hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHH--HHHhcCCCceEEcCCeeEEEEeCCCCCCcccCC
Q 010200          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLL--SCMQNTEFQKTIYPSRLTSMALLPSSSSISVDS  211 (515)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~--~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~  211 (515)
                      +..+++++.+|+......+.+....... ..++.+....++..|+  ....+..+++|....++.++...     .....
T Consensus       114 R~~~~~~~~v~Ds~s~a~I~~~~d~~~~-d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~-----~~l~~  187 (481)
T KOG3855|consen  114 RYQKFSRMLVWDSCSAALILFDHDNVGI-DMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIP-----EYLIK  187 (481)
T ss_pred             ccccccceeeecccchhhhhhccccccc-cceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccc-----cccCC
Confidence            9999999999998887777776544332 3468888888888888  44455567999999999998761     00011


Q ss_pred             CCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC---ceEEEEecCC
Q 010200          212 TPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN---YCAWQRFLPA  288 (515)
Q Consensus       212 ~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  288 (515)
                      +       +.+....++..||..+.+|++|+|||.+|.+|+..+++...+.|++++++++..+..+.   ...||+|.|.
T Consensus       188 ~-------~n~~~~~i~l~dg~~~~~~LLigAdg~Ns~vR~~snid~~~~ny~~havVAtl~l~~~~~~~~~AwQRFlP~  260 (481)
T KOG3855|consen  188 N-------DNGMWFHITLTDGINFATDLLIGADGFNSVVRKASNIDVASWNYDQHAVVATLKLEEEAILNGVAWQRFLPT  260 (481)
T ss_pred             C-------CCcceEEEEeccCceeeeceeeccccccchhhhhcCCCcccccccceeeeEEEEecccccccchhHHhcCCC
Confidence            1       24467788899999999999999999999999999999999999999999999988733   6899999999


Q ss_pred             CcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCccc--c----hhccccCcccccc
Q 010200          289 GPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVD--M----FSWFRGDATLSAK  362 (515)
Q Consensus       289 g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~  362 (515)
                      |++.+.|++++..+++|...++....++...++.|.+.++.+|...+....-....+...  .    .+++...   ...
T Consensus       261 GpiAllpl~d~~s~LvWSts~~~a~~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~al~~~~~~~~sl~~~~---k~~  337 (481)
T KOG3855|consen  261 GPIALLPLSDTLSSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNGRAQLSESLLNTS---KRL  337 (481)
T ss_pred             CceeecccccccccceeecCHHHHHHHhcCCchhHHHHHHHHHhccCCCchhhhchhhhhcchhhccHHHHhcc---Ccc
Confidence            999999999999999999999999899999999999999998853332222111000000  0    1111111   111


Q ss_pred             ccccCCcceEEeccceee-eccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchH
Q 010200          363 ECFEVPPRVVKLASERMV-FPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEA  441 (515)
Q Consensus       363 ~~~~i~~~~~~~~~~~~~-~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~  441 (515)
                      ...+.|+.+.++...... ||+...++..|..+|+.|+|||||.++|..|||.|+++.|+..|.+.|.++..++.|+++.
T Consensus       338 ~~~q~pp~V~~v~dksRa~FPLgf~ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~DlgS~  417 (481)
T KOG3855|consen  338 ANQQYPPSVFEVGDKSRAQFPLGFGHADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSGLDLGSV  417 (481)
T ss_pred             cccccCCeEEEecccceeecccccccHHHhcCCchhhhcchhhccccCcccccCCChhhHHHHHHHHHHHHHhcccccch
Confidence            223688889998887665 9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhcC
Q 010200          442 SLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGE  504 (515)
Q Consensus       442 ~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~  504 (515)
                      .-|+.|+.+|.+....++...+.+.++|+.+.++...+|-+.+.+.++++++|.+||.+.++-
T Consensus       418 ~~L~~y~~~~~~~N~~ll~~vdkl~klY~t~~p~vV~~rt~GL~~~n~l~PvKN~im~~~~~~  480 (481)
T KOG3855|consen  418 EHLEPYERERLQHNYVLLGAVDKLHKLYATSAPPVVLLRTFGLQLTNALAPVKNFIMVTASKK  480 (481)
T ss_pred             hhhhHHHHHHhhhcchHHHHHHHHHHHHhccCCcEEEEeccchhhccccccHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999999998763

>PRK07588 hypothetical protein; Provisional

Probab=100.00  E-value=1.3e-43  Score=362.30  Aligned_cols=379  Identities=17%  Similarity=0.200  Sum_probs=273.8

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      +||+||||||+||++|+.|++.    |++|+||||.+...          ..+.++.++++++++|+++|+++.+.+.+.
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~----G~~v~v~E~~~~~~----------~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~   66 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRY----GHEPTLIERAPELR----------TGGYMVDFWGVGYEVAKRMGITDQLREAGY   66 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHC----CCceEEEeCCCCcc----------CCCeEEeccCcHHHHHHHcCCHHHHHhccC
Confidence            4899999999999999999996    99999999997652          235578889999999999999999987665


Q ss_pred             cccceEEEEeCCCccceeeecccCCC--CcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNK--EILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~  213 (515)
                       +...+.+++..+.....++......  ....+.+.|..|.+.|.+.+.. + ++|+++++|++++.             
T Consensus        67 -~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~-~-v~i~~~~~v~~i~~-------------  130 (391)
T PRK07588         67 -QIEHVRSVDPTGRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDG-Q-VETIFDDSIATIDE-------------  130 (391)
T ss_pred             -CccceEEEcCCCCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhhc-C-eEEEeCCEEeEEEE-------------
Confidence             6777888876554333333222211  1123579999999999987653 4 89999999999976             


Q ss_pred             CcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCcccc-ccCC-ceEEEEEEEeec-CCceEEEEec-CCC
Q 010200          214 SATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTG-WSYS-QNAIICTVEHNK-ENYCAWQRFL-PAG  289 (515)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~-~~~~-~~~~~~~~~~~~-~~~~~~~~~~-~~g  289 (515)
                             +++.+++.+++|+++.+|+||+|||.+|.+|+.+...... ..+. .......+.... .....+..+. +++
T Consensus       131 -------~~~~v~v~~~~g~~~~~d~vIgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~  203 (391)
T PRK07588        131 -------HRDGVRVTFERGTPRDFDLVIGADGLHSHVRRLVFGPERDFEHYLGCKVAACVVDGYRPRDERTYVLYNEVGR  203 (391)
T ss_pred             -------CCCeEEEEECCCCEEEeCEEEECCCCCccchhhccCCccceEEEcCcEEEEEEcCCCCCCCCceEEEEeCCCC
Confidence                   4456889999999999999999999999999986322221 1121 111122221111 1233344444 566


Q ss_pred             cEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCc
Q 010200          290 PIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPP  369 (515)
Q Consensus       290 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  369 (515)
                      ++.++|+.++...++|....+..  ....+.+...+.+.+.+. .|...       ....+...                
T Consensus       204 ~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~-~~~~~-------~~~~~~~~----------------  257 (391)
T PRK07588        204 QVARVALRGDRTLFLFIFRAEHD--NPPLTPAEEKQLLRDQFG-DVGWE-------TPDILAAL----------------  257 (391)
T ss_pred             EEEEEecCCCCeEEEEEEEcCCc--cccCCHHHHHHHHHHHhc-cCCcc-------HHHHHHhh----------------
Confidence            89999998887766666543321  122455667777777664 33221       00111110                


Q ss_pred             ceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHH
Q 010200          370 RVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA  449 (515)
Q Consensus       370 ~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~  449 (515)
                         .........+.....+++|..|+|+|+|||||.|+|+.|||+|+||+||..|++.|....   .+  ...+|+.|++
T Consensus       258 ---~~~~~~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~---~~--~~~al~~Y~~  329 (391)
T PRK07588        258 ---DDVEDLYFDVVSQIRMDRWSRGRVALVGDAAACPSLLGGEGSGLAITEAYVLAGELARAG---GD--HRRAFDAYEK  329 (391)
T ss_pred             ---hcccchheeeeeeeccCccccCCEEEEEccccCCCCccCCcHHHHHHHHHHHHHHHHhcc---CC--HHHHHHHHHH
Confidence               000000011222234678999999999999999999999999999999999999997632   12  3789999999


Q ss_pred             HhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhcCCC
Q 010200          450 ERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQR  506 (515)
Q Consensus       450 ~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~~  506 (515)
                      .|++++..++..++.+.++++..+++...+|+..+..+. .|++++.+++.....++
T Consensus       330 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~-~~~~~~~~~~~~~~~~~  385 (391)
T PRK07588        330 RLRPFIAGKQAAAAKFLSVFAPKTRFGLYVRNIAMKIMN-LPPVADFVGAGSFRDDF  385 (391)
T ss_pred             HHHHHHHHHHhhcccccccccCCCHHHHHHHHHHHHHhc-cchhhhhhhhccccCCC
Confidence            999999999999999999999999999999999999999 79999999987766554

>PRK06834 hypothetical protein; Provisional

Probab=100.00  E-value=5.7e-43  Score=364.22  Aligned_cols=368  Identities=24%  Similarity=0.285  Sum_probs=282.4

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      .++||+||||||+|+++|+.|++.    |++|+||||.+.+.         ....++..++++++++|+.+|+++.+.+.
T Consensus         2 ~~~dVlIVGaGp~Gl~lA~~La~~----G~~v~vlEr~~~~~---------~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~   68 (488)
T PRK06834          2 TEHAVVIAGGGPTGLMLAGELALA----GVDVAIVERRPNQE---------LVGSRAGGLHARTLEVLDQRGIADRFLAQ   68 (488)
T ss_pred             CcceEEEECCCHHHHHHHHHHHHC----CCcEEEEecCCCCC---------CCCcceeeECHHHHHHHHHcCcHHHHHhc
Confidence            358999999999999999999996    99999999988651         12346788999999999999999998875


Q ss_pred             hccccceEEEEeCCCccceeeecccCC-CCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCC
Q 010200          134 RHAYFDKMQVWDYTGLGYTKYNARDVN-KEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (515)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~  212 (515)
                      .. ......+ .     ...+...... ...+++.+.+..+++.|.+.+++.| ++|+++++|++++.            
T Consensus        69 ~~-~~~~~~~-~-----~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~g-v~i~~~~~v~~v~~------------  128 (488)
T PRK06834         69 GQ-VAQVTGF-A-----ATRLDISDFPTRHNYGLALWQNHIERILAEWVGELG-VPIYRGREVTGFAQ------------  128 (488)
T ss_pred             CC-cccccee-e-----eEecccccCCCCCCccccccHHHHHHHHHHHHHhCC-CEEEcCCEEEEEEE------------
Confidence            43 2111111 0     1111111111 1234567889999999999999887 99999999999986            


Q ss_pred             CCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCCceEEEEecCCCcEE
Q 010200          213 PSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIA  292 (515)
Q Consensus       213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  292 (515)
                              +++.+.+++.+|+++++|+||+|||.+|.+|+.+++...+..+...++.+.+....... ....+.+.+...
T Consensus       129 --------~~~~v~v~~~~g~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~dv~~~~~~~-~~~~~~~~g~~~  199 (488)
T PRK06834        129 --------DDTGVDVELSDGRTLRAQYLVGCDGGRSLVRKAAGIDFPGWDPTTSYLIAEVEMTEEPE-WGVHRDALGIHA  199 (488)
T ss_pred             --------cCCeEEEEECCCCEEEeCEEEEecCCCCCcHhhcCCCCCCCCcceEEEEEEEEecCCCC-cceeeCCCceEE
Confidence                    34567888888888999999999999999999999988888888888888877654321 112345567777


Q ss_pred             EEecC-CCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCcce
Q 010200          293 LLPIG-DNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRV  371 (515)
Q Consensus       293 ~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  371 (515)
                      +.|.. ++.++++|......  .....+.+++...+.+.+...+...                                 
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~g~~~~~~---------------------------------  244 (488)
T PRK06834        200 FGRLEDEGPVRVMVTEKQVG--ATGEPTLDDLREALIAVYGTDYGIH---------------------------------  244 (488)
T ss_pred             EeccCCCCeEEEEEecCCCC--CCCCCCHHHHHHHHHHhhCCCCccc---------------------------------
Confidence            88876 56777777654332  1224567778777777553111100                                 


Q ss_pred             EEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHHHh
Q 010200          372 VKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAER  451 (515)
Q Consensus       372 ~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~~r  451 (515)
                        .......|+...+.+++|..|||+|+|||||.++|+.|||+|++|+||.+|+++|...++..   ....+|+.|+++|
T Consensus       245 --~~~~~~~~~~~~r~a~~~~~gRV~LaGDAAH~~~P~gGQG~N~gi~DA~nLawkLa~vl~g~---~~~~lLd~Ye~eR  319 (488)
T PRK06834        245 --SPTWISRFTDMARQAASYRDGRVLLAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVVKGT---SPESLLDTYHAER  319 (488)
T ss_pred             --cceeEEeccccceecccccCCcEEEEeeccccCCccccccccccHHHHHHHHHHHHHHHcCC---CcHHHHHHHHHHH
Confidence              00112246667777899999999999999999999999999999999999999999988643   3478999999999


Q ss_pred             hHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhcCC
Q 010200          452 KPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ  505 (515)
Q Consensus       452 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~  505 (515)
                      ++.+..++..+..+..++. .++....+|+.++.++...+. ++.++...+|+.
T Consensus       320 rp~~~~~~~~t~~~~~~~~-~~~~~~~lR~~~~~~~~~~~~-~~~~~~~~~g~~  371 (488)
T PRK06834        320 HPVAARVLRNTMAQVALLR-PDDRTEALRDIVAELLGMDEP-RKRIAAMMSGLD  371 (488)
T ss_pred             HHHHHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHhcCcHH-HHHHHHHHhcCC
Confidence            9999999999999888886 677889999999998887554 889999999874

>PRK08244 hypothetical protein; Provisional

Probab=100.00  E-value=9.8e-43  Score=365.80  Aligned_cols=373  Identities=21%  Similarity=0.267  Sum_probs=282.5

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      ++||+||||||+||++|+.|++.    |++|+||||.+.+          ...++++.++++++++|+++|+++.+.+..
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~----G~~v~viEr~~~~----------~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~   67 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALA----GVKTCVIERLKET----------VPYSKALTLHPRTLEILDMRGLLERFLEKG   67 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC----CCcEEEEecCCCC----------CCCcceeEecHHHHHHHHhcCcHHHHHhhc
Confidence            48999999999999999999996    9999999999866          345679999999999999999999998765


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                      . +.....++....  ...+.... ....+.+.+++..+.+.|.+.+.+.| +++++++++++++.              
T Consensus        68 ~-~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~i~q~~le~~L~~~~~~~g-v~v~~~~~v~~i~~--------------  128 (493)
T PRK08244         68 R-KLPSGHFAGLDT--RLDFSALD-TSSNYTLFLPQAETEKVLEEHARSLG-VEIFRGAEVLAVRQ--------------  128 (493)
T ss_pred             c-cccceEEecccc--cCCcccCC-CCCCcEEEecHHHHHHHHHHHHHHcC-CeEEeCCEEEEEEE--------------
Confidence            4 444455543221  12222111 12234577999999999999998887 99999999999976              


Q ss_pred             cccccccCCeeEEEcC--CC-cEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC-ceEEEEecCCCc
Q 010200          215 ATTLFTKGHLAKLDLS--DG-TSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGP  290 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~--~g-~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~  290 (515)
                            .++.+++.+.  +| .++++|+||+|||.+|.||+.+++...+..+...++.+.+....+. ...+..+.++++
T Consensus       129 ------~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  202 (493)
T PRK08244        129 ------DGDGVEVVVRGPDGLRTLTSSYVVGADGAGSIVRKQAGIAFPGTDATFTAMLGDVVLKDPPPSSVLSLCTREGG  202 (493)
T ss_pred             ------cCCeEEEEEEeCCccEEEEeCEEEECCCCChHHHHhcCCCccCCCcceEEEEEEEEecCCCCcceeEEEeCCce
Confidence                  3344555553  45 4799999999999999999999888777777777777766554333 345566788899


Q ss_pred             EEEEecCCCceEEEEEcCCCCh-HHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCc
Q 010200          291 IALLPIGDNFSNIVWTMNPKDA-SDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPP  369 (515)
Q Consensus       291 ~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  369 (515)
                      ++++|++++..++++..+.... ......+.+++.+.+.+.+.....                              +  
T Consensus       203 ~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------------------------~--  250 (493)
T PRK08244        203 VMIVPLSGGIYRVLIIDPERPQVPKDEPVTLEELKTSLIRICGTDFG------------------------------L--  250 (493)
T ss_pred             EEEEECCCCeEEEEEEcCCcccccCCCCCCHHHHHHHHHHhhCCCCC------------------------------c--
Confidence            9999999888877765433211 112234667777777664421000                              0  


Q ss_pred             ceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHH
Q 010200          370 RVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA  449 (515)
Q Consensus       370 ~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~  449 (515)
                        . .......|++..+.+++|..|||+|+|||||.++|+.|||+|+||+||.+|++.|...++..   ....+|+.|++
T Consensus       251 --~-~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g~---~~~~lL~~Ye~  324 (493)
T PRK08244        251 --N-DPVWMSRFGNATRQAERYRSGRIFLAGDAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIKGW---APDWLLDSYHA  324 (493)
T ss_pred             --C-CeeEEEecccceeeHhhhccCcEEEeecceeccCCccccccccchhhHHHHHHHHHHHHcCC---CCchhhhhhHH
Confidence              0 00011236666667789999999999999999999999999999999999999999987532   33689999999


Q ss_pred             HhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhcCCC
Q 010200          450 ERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQR  506 (515)
Q Consensus       450 ~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~~  506 (515)
                      +|++.+..++..++.+..++... +....+|+.+..++ .++.+++.+....+|++.
T Consensus       325 eR~~~~~~~~~~~~~~~~~~~~~-~~~~~~R~~~~~~~-~~~~~~~~~~~~~~~~~~  379 (493)
T PRK08244        325 ERHPVGTALLRNTEVQTKLFDFT-RPGLALRSMLSDLL-GFPEVNRYLAGQISALDV  379 (493)
T ss_pred             HHHHHHHHHHHHhHHHHHHhcCC-chhHHHHHHHHHHh-cchHHHHHHHHHHhcCCc
Confidence            99999999999999999988654 77788898866555 468889999888877764

>PRK07045 putative monooxygenase; Reviewed

Probab=100.00  E-value=2.2e-42  Score=352.98  Aligned_cols=371  Identities=20%  Similarity=0.312  Sum_probs=260.9

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhh
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (515)
                      +.++||+||||||+||++|+.|++.    |++|+||||.+.++          ..+++..++++++++|+++|+++.+.+
T Consensus         3 ~~~~~V~IiGgGpaGl~~A~~L~~~----G~~v~v~E~~~~~~----------~~~~~~~l~~~~~~~L~~lGl~~~~~~   68 (388)
T PRK07045          3 NNPVDVLINGSGIAGVALAHLLGAR----GHSVTVVERAARNR----------AQNGADLLKPSGIGVVRAMGLLDDVFA   68 (388)
T ss_pred             CceeEEEEECCcHHHHHHHHHHHhc----CCcEEEEeCCCccc----------CCCcccccCccHHHHHHHcCCHHHHHh
Confidence            4568999999999999999999996    99999999999773          222356799999999999999999887


Q ss_pred             hhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCC
Q 010200          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (515)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~  212 (515)
                      ........+.++.. +.....++........+.+.+.|..|.+.|.+.+.+.++++++++++|++++.           +
T Consensus        69 ~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~-----------~  136 (388)
T PRK07045         69 AGGLRRDAMRLYHD-KELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIER-----------D  136 (388)
T ss_pred             cccccccceEEecC-CcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEE-----------C
Confidence            65433445555432 22222222211111122346889999999999987766699999999999976           1


Q ss_pred             CCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhc-CCccccccCCceEEEEEEEeecCCc-eEEEEec-CCC
Q 010200          213 PSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELA-GFKTTGWSYSQNAIICTVEHNKENY-CAWQRFL-PAG  289 (515)
Q Consensus       213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~g  289 (515)
                      +       ++..+.|++++|+++.+|+||+|||.+|.+|+.+ +.......|.....++.+....... .....+. +.+
T Consensus       137 ~-------~~~~~~v~~~~g~~~~~~~vIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (388)
T PRK07045        137 A-------DGTVTSVTLSDGERVAPTVLVGADGARSMIRDDVLRMPAERVPYATPMAFGTIALTDSVRECNRLYVDSNQG  209 (388)
T ss_pred             C-------CCcEEEEEeCCCCEEECCEEEECCCCChHHHHHhhCCCcccCCCCcceeEEEEeccCCccccceEEEcCCCc
Confidence            1       1224578888999999999999999999999974 5444444455455555555433222 2222333 356


Q ss_pred             cEEEEecCCCceEEEEEcCCCChHHh-hcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCC
Q 010200          290 PIALLPIGDNFSNIVWTMNPKDASDC-KSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVP  368 (515)
Q Consensus       290 ~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  368 (515)
                      +++++|+.++..+++|..+.+..... ...+.+.+.+.+...+.    +.       ..+.++.                
T Consensus       210 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-------~~~~~~~----------------  262 (388)
T PRK07045        210 LAYFYPIGDQATRLVVSFPADEMQGYLADTTRTKLLARLNEFVG----DE-------SADAMAA----------------  262 (388)
T ss_pred             eEEEEEcCCCcEEEEEEeccccchhccCCCCHHHHHHHHhhhcC----cc-------chHHHhc----------------
Confidence            67889998888888887765443222 12334444444443221    11       0001110                


Q ss_pred             cceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHH
Q 010200          369 PRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYE  448 (515)
Q Consensus       369 ~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~  448 (515)
                         .........+|+....+++|..+||+|||||||+|+|+.|||+|+||+||..|+++|...+....  ....+|+.|+
T Consensus       263 ---~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~--~~~~~L~~Ye  337 (388)
T PRK07045        263 ---IGAGTAFPLIPLGRMNLDRYHKRNVVLLGDAAHSIHPITGQGMNLAIEDAGELGACLDLHLSGQI--ALADALERFE  337 (388)
T ss_pred             ---cCcccccceeecCccccccccCCCEEEEEccccccCCCccccHHHHHHHHHHHHHHHHhhcCCch--hHHHHHHHHH
Confidence               00001111235555567889999999999999999999999999999999999999988654322  2378999999


Q ss_pred             HHhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcc
Q 010200          449 AERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQ  488 (515)
Q Consensus       449 ~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~  488 (515)
                      ++|+++...++..++.+.+.|+.........|.++...-.
T Consensus       338 ~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (388)
T PRK07045        338 RIRRPVNEAVISYGHALATTYHDRAALVANFRSQLQTSGR  377 (388)
T ss_pred             HHhhhHHHHHHhhhHHHhhhcccchhHHHHHHhhhhcccc
Confidence            9999999999999999999999998888888887765443

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=100.00  E-value=1.2e-41  Score=347.54  Aligned_cols=378  Identities=15%  Similarity=0.108  Sum_probs=263.9

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      ++||+||||||+||++|+.|++.    |++|+||||.+...        .....++..+.++++++|+++|+++.+.+..
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~----G~~v~v~E~~~~~~--------~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~   69 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLA----GIDSVVLERRSREY--------VEGRIRAGVLEQGTVDLLREAGVGERMDREG   69 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhc----CCCEEEEEcCCccc--------cccccceeEECHhHHHHHHHcCChHHHHhcC
Confidence            57999999999999999999996    99999999998531        0112345569999999999999999998766


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                      . ....+.++.....  ..++............+.+..+.+.|++.+.+.| +++++++++++++..             
T Consensus        70 ~-~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~g-v~v~~~~~v~~i~~~-------------  132 (392)
T PRK08243         70 L-VHDGIELRFDGRR--HRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAG-GPIRFEASDVALHDF-------------  132 (392)
T ss_pred             C-ccCcEEEEECCEE--EEeccccccCCceEEEeCcHHHHHHHHHHHHhCC-CeEEEeeeEEEEEec-------------
Confidence            5 6677777664322  2333222222233345678899999998888777 899999999998630             


Q ss_pred             cccccccCCeeEEEc-CCCc--EEEeeEEEEecCCCchhhhhcCCccccc---cCCceEEEEEEE-eecCCceEEEEecC
Q 010200          215 ATTLFTKGHLAKLDL-SDGT--SLYAKLVVGADGGKSRVRELAGFKTTGW---SYSQNAIICTVE-HNKENYCAWQRFLP  287 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~-~~g~--~~~ad~vV~AdG~~S~vr~~l~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~  287 (515)
                            ++..+.|++ .+|+  ++++|+||+|||.+|.+|++++......   .+.. .+.+.+. ........+....+
T Consensus       133 ------~~~~~~V~~~~~G~~~~i~ad~vVgADG~~S~vR~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  205 (392)
T PRK08243        133 ------DSDRPYVTYEKDGEEHRLDCDFIAGCDGFHGVSRASIPAGALRTFERVYPF-GWLGILAEAPPVSDELIYANHE  205 (392)
T ss_pred             ------CCCceEEEEEcCCeEEEEEeCEEEECCCCCCchhhhcCcchhhceecccCc-eEEEEeCCCCCCCCceEEeeCC
Confidence                  123345555 3564  6899999999999999999996543211   1111 1122221 11111222222233


Q ss_pred             CCcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccC
Q 010200          288 AGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEV  367 (515)
Q Consensus       288 ~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  367 (515)
                      .+..++.+.+.+...+++.+.....  ....+.+.+.+.+.+.+. .+.....         ..                
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~-~~~~~~~---------~~----------------  257 (392)
T PRK08243        206 RGFALCSMRSPTRSRYYLQCPLDDK--VEDWSDERFWDELRRRLP-PEDAERL---------VT----------------  257 (392)
T ss_pred             CceEEEecCCCCcEEEEEEecCCCC--cccCChhHHHHHHHHhcC-ccccccc---------cc----------------
Confidence            4444555545555556555543321  223345666677776554 1100000         00                


Q ss_pred             CcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHH
Q 010200          368 PPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKY  447 (515)
Q Consensus       368 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y  447 (515)
                       ..+    .....+|+.....++|..|||+|||||||.++|+.|||+|+||+||..|++.|...++.+    ...+|+.|
T Consensus       258 -~~~----~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~----~~~~L~~Y  328 (392)
T PRK08243        258 -GPS----IEKSIAPLRSFVAEPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVRYLARALVEFYREG----DTALLDAY  328 (392)
T ss_pred             -Ccc----ccccceeeeeceeccceeCCEEEEecccccCCCCcCcchhHHHHHHHHHHHHHHHHhccC----CHHHHHHH
Confidence             000    001124555556778989999999999999999999999999999999999999876542    27899999


Q ss_pred             HHHhhHHHHHHHHHHHHHHHhhcC---CCChHHHHHHHHHHhcccChhHHHHHHHHhhcCC
Q 010200          448 EAERKPANIVMMAVLDGFQKAYSV---DFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ  505 (515)
Q Consensus       448 ~~~r~~~~~~~~~~s~~~~~~~~~---~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~  505 (515)
                      ++.|++++..++..++.+..+++.   ...+...+|+..|+.+..+|...+.+..+.+|+.
T Consensus       329 e~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (392)
T PRK08243        329 SATALRRVWKAERFSWWMTSMLHRFPDDDPFDQRIQLAELDYLTSSRAAATTLAENYVGLP  389 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhcCHHHHHHHHHhccCCC
Confidence            999999999999999999998776   4557778999999999999999999999999984

>PRK06753 hypothetical protein; Provisional

Probab=100.00  E-value=2.3e-41  Score=343.86  Aligned_cols=353  Identities=18%  Similarity=0.237  Sum_probs=259.2

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      +||+||||||+||++|+.|++.    |++|+||||++.+..          .++++.+++++++.|+.+|+++.+.....
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~----g~~v~v~E~~~~~~~----------~g~gi~l~~~~~~~L~~~gl~~~~~~~~~   66 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQ----GHEVKVFEKNESVKE----------VGAGIGIGDNVIKKLGNHDLAKGIKNAGQ   66 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC----CCcEEEEecCCcccc----------cccceeeChHHHHHHHhcChHHHHHhcCC
Confidence            4799999999999999999996    999999999997732          34589999999999999999998877554


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                       +...+.+++..+.....++.   .....++.++|..|.+.|.+.+..   .+|+++++|++++.               
T Consensus        67 -~~~~~~~~~~~g~~~~~~~~---~~~~~~~~i~R~~l~~~L~~~~~~---~~i~~~~~v~~i~~---------------  124 (373)
T PRK06753         67 -ILSTMNLLDDKGTLLNKVKL---KSNTLNVTLHRQTLIDIIKSYVKE---DAIFTGKEVTKIEN---------------  124 (373)
T ss_pred             -cccceeEEcCCCCEEeeccc---ccCCccccccHHHHHHHHHHhCCC---ceEEECCEEEEEEe---------------
Confidence             66777887765432222221   122345789999999999998763   57999999999976               


Q ss_pred             ccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeec--CCceEEEEecCCCcEEE
Q 010200          216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK--ENYCAWQRFLPAGPIAL  293 (515)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~  293 (515)
                           ++..+++++++|+++.+|+||+|||.+|.+|+.++........+..++.+.++...  ........+.+.+++++
T Consensus       125 -----~~~~v~v~~~~g~~~~~~~vigadG~~S~vR~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  199 (373)
T PRK06753        125 -----ETDKVTIHFADGESEAFDLCIGADGIHSKVRQSVNADSKVRYQGYTCFRGLIDDIDLKLPDCAKEYWGTKGRFGI  199 (373)
T ss_pred             -----cCCcEEEEECCCCEEecCEEEECCCcchHHHHHhCCCCCceEcceEEEEEEeccccccCccceEEEEcCCCEEEE
Confidence                 34568889999999999999999999999999997654433444555545444322  12344556678889999


Q ss_pred             EecCCCceEEEEEcCCCCh-HHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCcceE
Q 010200          294 LPIGDNFSNIVWTMNPKDA-SDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVV  372 (515)
Q Consensus       294 ~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  372 (515)
                      +|..++..++++.+..... ......+.    +.+.+.|. +|.+.       ..+.++..    +          .   
T Consensus       200 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~-~~~~~-------~~~~~~~~----~----------~---  250 (373)
T PRK06753        200 VPLLNNQAYWFITINAKERDPKYSSFGK----PHLQAYFN-HYPNE-------VREILDKQ----S----------E---  250 (373)
T ss_pred             EEcCCCeEEEEEEeccccCCcccccccH----HHHHHHHh-cCChH-------HHHHHHhC----C----------c---
Confidence            9999887777666543221 11112222    23334343 34322       11111110    0          0   


Q ss_pred             Eeccceeeecccc-ccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHHHh
Q 010200          373 KLASERMVFPLSL-KHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAER  451 (515)
Q Consensus       373 ~~~~~~~~~p~~~-~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~~r  451 (515)
                         .....+++.. .+.++|..++|+|||||||.|+|+.|||+|+||+||..|++.|...     +  ...+|+.|++.|
T Consensus       251 ---~~~~~~~~~~~~~~~~~~~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~L~~~L~~~-----~--~~~al~~Y~~~r  320 (373)
T PRK06753        251 ---TGILHHDIYDLKPLKSFVYGRIVLLGDAAHATTPNMGQGAGQAMEDAIVLANCLNAY-----D--FEKALQRYDKIR  320 (373)
T ss_pred             ---ccceeeccccccccccccCCCEEEEecccccCCCCcCccHHHHHHHHHHHHHHhhhc-----c--HHHHHHHHHHHh
Confidence               0000122211 2357788999999999999999999999999999999999999642     3  378999999999


Q ss_pred             hHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcc
Q 010200          452 KPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQ  488 (515)
Q Consensus       452 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~  488 (515)
                      ++++..++..++.+.++++..+++...+|+.+++.+.
T Consensus       321 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~l~~~~  357 (373)
T PRK06753        321 VKHTAKVIKRSRKIGKIAQIESKLLVALRNRVMKRMP  357 (373)
T ss_pred             hHHHHHHHHHHHHHhHHHhcCCchHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999998874

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=100.00  E-value=2.1e-40  Score=352.04  Aligned_cols=369  Identities=20%  Similarity=0.276  Sum_probs=268.8

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhh
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (515)
                      +..+||+||||||+||++|+.|++.    |++|+||||.+.+          ...+++..++++++++|+++|+++.+.+
T Consensus        21 ~~~~dVlIVGaGpaGl~lA~~L~~~----G~~v~viE~~~~~----------~~~~ra~~l~~~~~~~l~~lGl~~~l~~   86 (547)
T PRK08132         21 PARHPVVVVGAGPVGLALAIDLAQQ----GVPVVLLDDDDTL----------STGSRAICFAKRSLEIFDRLGCGERMVD   86 (547)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhC----CCcEEEEeCCCCC----------CCCCeEEEEcHHHHHHHHHcCCcHHHHh
Confidence            3568999999999999999999996    9999999999865          2446789999999999999999999887


Q ss_pred             hhccccceEEEEeCCCccceeeecccC--CCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccC
Q 010200          133 HRHAYFDKMQVWDYTGLGYTKYNARDV--NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVD  210 (515)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~  210 (515)
                      ... ......++.... ....+.....  ......+.+.+..+++.|.+.+.+.++++++++++|++++.          
T Consensus        87 ~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~----------  154 (547)
T PRK08132         87 KGV-SWNVGKVFLRDE-EVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQ----------  154 (547)
T ss_pred             hCc-eeeceeEEeCCC-eEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEE----------
Confidence            654 333233333221 1222221111  11122355889999999999998876699999999999976          


Q ss_pred             CCCCcccccccCCeeEEEc--CCCc-EEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC-ceEEEEe-
Q 010200          211 STPSATTLFTKGHLAKLDL--SDGT-SLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRF-  285 (515)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~--~~g~-~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-  285 (515)
                                +...+++.+  .+|. ++++|+||+|||.+|.||+.+++...+..+...++...+....+. ...+.++ 
T Consensus       155 ----------~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~  224 (547)
T PRK08132        155 ----------HDDGVTLTVETPDGPYTLEADWVIACDGARSPLREMLGLEFEGRTFEDRFLIADVKMKADFPTERWFWFD  224 (547)
T ss_pred             ----------cCCEEEEEEECCCCcEEEEeCEEEECCCCCcHHHHHcCCCCCCccccceEEEEEEEecCCCCCeeeEEEe
Confidence                      233455443  4554 799999999999999999999988777777666666655544332 2223333 


Q ss_pred             ---cCCCcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCcccccc
Q 010200          286 ---LPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAK  362 (515)
Q Consensus       286 ---~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (515)
                         .++..+++.|.+++.+.+.+........ ....+.+.+...+.+.+.    .. .                      
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~----~~-~----------------------  276 (547)
T PRK08132        225 PPFHPGQSVLLHRQPDNVWRIDFQLGWDADP-EAEKKPENVIPRVRALLG----ED-V----------------------  276 (547)
T ss_pred             ccCCCCcEEEEEeCCCCeEEEEEecCCCCCc-hhhcCHHHHHHHHHHHcC----CC-C----------------------
Confidence               2344566667666666655544322111 112345666666666442    00 0                      


Q ss_pred             ccccCCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHH
Q 010200          363 ECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEAS  442 (515)
Q Consensus       363 ~~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~  442 (515)
                           +   .. ......|++..+.+++|..|||+|+|||||.++|+.|||+|+||+||.+|++.|...++..   ....
T Consensus       277 -----~---~~-~~~~~~~~~~~~~a~~~~~gRV~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g~---~~~~  344 (547)
T PRK08132        277 -----P---FE-LEWVSVYTFQCRRMDRFRHGRVLFAGDAAHQVSPFGARGANSGIQDADNLAWKLALVLRGR---APDS  344 (547)
T ss_pred             -----C---ee-EEEEEeeeeeeeeecccccccEEEEecccccCCCcccccccchHHHHHHHHHHHHHHHcCC---CcHH
Confidence                 0   00 0111236666667889999999999999999999999999999999999999999887643   2478


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHH
Q 010200          443 LLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNI  497 (515)
Q Consensus       443 al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~  497 (515)
                      +|+.|+++|+++++.++..+..+..+++..++....+|+..+..+...+.+++.+
T Consensus       345 lL~~Ye~eR~p~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~  399 (547)
T PRK08132        345 LLDSYASEREFAADENIRNSTRSTDFITPKSPVSRLFRDAVLRLARDHPFARRLV  399 (547)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhcccHHHHHHH
Confidence            9999999999999999999999999988888888899999999998888777665

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=100.00  E-value=2.1e-40  Score=353.94  Aligned_cols=354  Identities=20%  Similarity=0.302  Sum_probs=254.6

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhh
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQ  131 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~  131 (515)
                      ++.++||+||||||+||++|+.|++.   .|++|+||||.+.+          ...+++.+++++++++|+.+|+++.+.
T Consensus        29 ~~~~~dVlIVGAGPaGL~lA~~Lar~---~Gi~v~IiE~~~~~----------~~~grA~gl~prtleiL~~lGl~d~l~   95 (634)
T PRK08294         29 LPDEVDVLIVGCGPAGLTLAAQLSAF---PDITTRIVERKPGR----------LELGQADGIACRTMEMFQAFGFAERIL   95 (634)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHhcC---CCCcEEEEEcCCCC----------CCCCeeeEEChHHHHHHHhccchHHHH
Confidence            34579999999999999999999993   28999999999865          344678999999999999999999998


Q ss_pred             hhhccccceEEEEeCCCcc--cee----ee-cccCCCCcceEEechHHHHHHHHHHHhcCCC-ceEEcCCeeEEEEeCCC
Q 010200          132 QHRHAYFDKMQVWDYTGLG--YTK----YN-ARDVNKEILGCVVENKVLHSSLLSCMQNTEF-QKTIYPSRLTSMALLPS  203 (515)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~--~~~----~~-~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~-v~i~~~~~v~~i~~~~~  203 (515)
                      +... ....+.+|...+..  .+.    +. ............++|..+++.|++.+.+.|. +++++++++++++.   
T Consensus        96 ~~g~-~~~~~~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~---  171 (634)
T PRK08294         96 KEAY-WINETAFWKPDPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEV---  171 (634)
T ss_pred             hhcc-cccceEEEcCCCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEE---
Confidence            8766 66677777643211  110    00 0011111223578999999999999988762 57899999999976   


Q ss_pred             CCCcccCCCCCcccccccCCeeEEEcC------CC--cEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEee
Q 010200          204 SSSISVDSTPSATTLFTKGHLAKLDLS------DG--TSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHN  275 (515)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~v~~~------~g--~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~  275 (515)
                            +++        ....++++++      +|  ++++||+||+|||++|.||+++|+...+..++..+....+...
T Consensus       172 ------~~~--------~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~~~v~dv~~~  237 (634)
T PRK08294        172 ------DEE--------GEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSANHAWGVMDVLAV  237 (634)
T ss_pred             ------CCC--------CCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhcCCCccCCcccceEEEEEEEEc
Confidence                  110        1234666664      35  4899999999999999999999988877777766655554432


Q ss_pred             cCC---ceEE-EEecCCCcEEEEecCCCc-eEEEEEcCC---CChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcc
Q 010200          276 KEN---YCAW-QRFLPAGPIALLPIGDNF-SNIVWTMNP---KDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSV  347 (515)
Q Consensus       276 ~~~---~~~~-~~~~~~g~~~~~p~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (515)
                      .+.   .... ....+++.+.++|.+++. +++++....   .........+.+++.+.+++.+. .|...         
T Consensus       238 ~~~p~~~~~~~~~~~~~g~~~~~P~~~g~~~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~-p~~~~---------  307 (634)
T PRK08294        238 TDFPDIRLKCAIQSASEGSILLIPREGGYLVRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRILH-PYTLD---------  307 (634)
T ss_pred             cCCCCcceEEEEecCCCceEEEEECCCCeEEEEEEecCcCCCccccccccCCHHHHHHHHHHhcC-CCCCc---------
Confidence            221   1111 122467899999998874 555444321   11122345677888888777543 11100         


Q ss_pred             cchhccccCccccccccccCCcceEEeccceeeecccccccccc----------ccCcEEEEcccccccCCccccchhhc
Q 010200          348 DMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNY----------VSKRVVLIGDAAHTVHPLAGQGVNLG  417 (515)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~~~~----------~~~~v~lvGDAAh~~~P~~G~G~n~a  417 (515)
                                              ......+..|++..+.+++|          ..|||+|+|||||+++|..|||+|++
T Consensus       308 ------------------------~~~v~w~s~y~i~~r~a~~f~~~~~~~~~~r~gRVfLaGDAAH~hsP~~GQGmN~g  363 (634)
T PRK08294        308 ------------------------VKEVAWWSVYEVGQRLTDRFDDVPAEEAGTRLPRVFIAGDACHTHSAKAGQGMNVS  363 (634)
T ss_pred             ------------------------eeEEeEEecccccceehhhcccccccccccccCCEEEEecCccCCCCccccchhhH
Confidence                                    01112222355555555444          35899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhHhcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCC
Q 010200          418 FGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDF  473 (515)
Q Consensus       418 l~da~~La~~l~~~~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~  473 (515)
                      |+||.+|++.|...++..   ...++|+.|+++|++.++.+++.++.+.++|+...
T Consensus       364 iqDA~nLawkLa~vl~g~---a~~~lL~tYe~ERrp~a~~li~~~~~~~~l~~~~~  416 (634)
T PRK08294        364 MQDGFNLGWKLAAVLSGR---SPPELLHTYSAERQAIAQELIDFDREWSTMMAAPP  416 (634)
T ss_pred             HHHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            999999999999988643   34789999999999999999999999999997653

>PRK06847 hypothetical protein; Provisional

Probab=100.00  E-value=1.4e-40  Score=338.48  Aligned_cols=364  Identities=20%  Similarity=0.217  Sum_probs=260.6

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      +..||+||||||+||++|+.|++.    |++|+|||+.+.+.          ..+.++.++++++++|+.+|+.+.+.+.
T Consensus         3 ~~~~V~IVGaG~aGl~~A~~L~~~----g~~v~v~E~~~~~~----------~~g~g~~l~~~~~~~l~~~gl~~~~~~~   68 (375)
T PRK06847          3 AVKKVLIVGGGIGGLSAAIALRRA----GIAVDLVEIDPEWR----------VYGAGITLQGNALRALRELGVLDECLEA   68 (375)
T ss_pred             CcceEEEECCCHHHHHHHHHHHhC----CCCEEEEecCCCCc----------cCCceeeecHHHHHHHHHcCCHHHHHHh
Confidence            457999999999999999999996    99999999998763          2355899999999999999999988876


Q ss_pred             hccccceEEEEeCCCccceeeecccCC--CCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCC
Q 010200          134 RHAYFDKMQVWDYTGLGYTKYNARDVN--KEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDS  211 (515)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~  211 (515)
                      .. +...+.+++..+.....++.....  .......+.|..|.+.|.+.+.+.| ++|+++++|++++.           
T Consensus        69 ~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g-v~v~~~~~v~~i~~-----------  135 (375)
T PRK06847         69 GF-GFDGVDLFDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAG-ADVRLGTTVTAIEQ-----------  135 (375)
T ss_pred             CC-CccceEEECCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhC-CEEEeCCEEEEEEE-----------
Confidence            65 666777776555433333211111  1122356889999999999998887 99999999999976           


Q ss_pred             CCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhc-CCccccccCCceEEEEEEEeecCCceEEEEecCCCc
Q 010200          212 TPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELA-GFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGP  290 (515)
Q Consensus       212 ~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  290 (515)
                               .+..+++.+.+|+++.+|+||+|||.+|.+|+.+ +........+...+.+.++..........+..+++.
T Consensus       136 ---------~~~~~~v~~~~g~~~~ad~vI~AdG~~s~~r~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (375)
T PRK06847        136 ---------DDDGVTVTFSDGTTGRYDLVVGADGLYSKVRSLVFPDEPEPEYTGQGVWRAVLPRPAEVDRSLMYLGPTTK  206 (375)
T ss_pred             ---------cCCEEEEEEcCCCEEEcCEEEECcCCCcchhhHhcCCCCCceeccceEEEEEecCCCCccceEEEeCCCcE
Confidence                     3355788888998999999999999999999988 332222333444444445443332333444566778


Q ss_pred             EEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCcc
Q 010200          291 IALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPR  370 (515)
Q Consensus       291 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  370 (515)
                      +.++|..++...+++....+..   ...+.+.+.+.+.+.+. .|.++..      ...... +                
T Consensus       207 ~~~~p~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~-~----------------  259 (375)
T PRK06847        207 AGVVPLSEDLMYLFVTEPRPDN---PRIEPDTLAALLRELLA-PFGGPVL------QELREQ-I----------------  259 (375)
T ss_pred             EEEEcCCCCeEEEEEeccCccc---ccCChHHHHHHHHHHHh-hcCchHH------HHHHHh-c----------------
Confidence            8889998776555544333221   12345556666666554 4443100      001100 0                


Q ss_pred             eEEeccceeeecccccc-ccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHH
Q 010200          371 VVKLASERMVFPLSLKH-ANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA  449 (515)
Q Consensus       371 ~~~~~~~~~~~p~~~~~-~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~  449 (515)
                        ........+|+.... ..+|..++|+|||||||+|+|+.|||+|+||+||..|++.|.+.    .+  ...+|+.|++
T Consensus       260 --~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAaH~~~P~~GqG~n~aieDA~~La~~L~~~----~~--~~~al~~Y~~  331 (375)
T PRK06847        260 --TDDAQVVYRPLETLLVPAPWHRGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLAEELARH----DS--LEAALQAYYA  331 (375)
T ss_pred             --CCccceeeccHhhccCCCCccCCeEEEEechhccCCCCccccHHHHHHHHHHHHHHHhhC----Cc--HHHHHHHHHH
Confidence              000011123444332 45688999999999999999999999999999999999999762    22  3789999999


Q ss_pred             HhhHHHHHHHHHHHHHHHhhcCCCC---hHHHHHHHHHHhcc
Q 010200          450 ERKPANIVMMAVLDGFQKAYSVDFG---PLNILRAAAFHGAQ  488 (515)
Q Consensus       450 ~r~~~~~~~~~~s~~~~~~~~~~~~---~~~~~r~~~~~~~~  488 (515)
                      +|++++..++..++.+...+....+   ....+|++++.++.
T Consensus       332 ~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (375)
T PRK06847        332 RRWERCRMVVEASARIGRIEIEGGDKAEHAGLMRESMELLAQ  373 (375)
T ss_pred             HHHHHHHHHHHHHHHhhheecCCCCccchHHHHHHHHHHhcC
Confidence            9999999999999999999876655   77788888887764

>PRK06184 hypothetical protein; Provisional

Probab=100.00  E-value=9.9e-41  Score=351.21  Aligned_cols=340  Identities=24%  Similarity=0.333  Sum_probs=249.7

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      ..+||+||||||+||++|+.|+++    |++|+||||.+.+          ...+++.+++++++++|+.+|+++.+.+.
T Consensus         2 ~~~dVlIVGaGpaGl~~A~~La~~----Gi~v~viE~~~~~----------~~~~ra~~l~~~~~e~l~~lGl~~~l~~~   67 (502)
T PRK06184          2 TTTDVLIVGAGPTGLTLAIELARR----GVSFRLIEKAPEP----------FPGSRGKGIQPRTQEVFDDLGVLDRVVAA   67 (502)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHC----CCcEEEEeCCCCC----------CcCccceeecHHHHHHHHHcCcHHHHHhc
Confidence            358999999999999999999996    9999999999876          23456889999999999999999999886


Q ss_pred             hccccceEEEEeCCCccc-eeeecc----cCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcc
Q 010200          134 RHAYFDKMQVWDYTGLGY-TKYNAR----DVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSIS  208 (515)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~  208 (515)
                      .. ....+.++...+... ..+...    ........+.+++..++..|.+.+.+.| ++|+++++|++++.        
T Consensus        68 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~g-v~i~~~~~v~~i~~--------  137 (502)
T PRK06184         68 GG-LYPPMRIYRDDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELG-HRVEFGCELVGFEQ--------  137 (502)
T ss_pred             Cc-cccceeEEeCCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCC-CEEEeCcEEEEEEE--------
Confidence            65 445555555333211 111100    0011123467899999999999999887 99999999999976        


Q ss_pred             cCCCCCcccccccCCeeEEEc---CCCcEEEeeEEEEecCCCchhhhhcCCccccccCCc-eEEEEEEEeecCCceEEEE
Q 010200          209 VDSTPSATTLFTKGHLAKLDL---SDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQ-NAIICTVEHNKENYCAWQR  284 (515)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~v~~---~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  284 (515)
                                  +.+.+++++   .++++++||+||+|||++|.||+.+++...+..+.. .++.+.+.........+..
T Consensus       138 ------------~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  205 (502)
T PRK06184        138 ------------DADGVTARVAGPAGEETVRARYLVGADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTGLDRDAWHQ  205 (502)
T ss_pred             ------------cCCcEEEEEEeCCCeEEEEeCEEEECCCCchHHHHhCCCCcccCcCCCceEEEEEEEeecCCCcceEE
Confidence                        334566666   556689999999999999999999998887777765 6666665544333334444


Q ss_pred             ec-CC-CcEEEEecCCC-ceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccc
Q 010200          285 FL-PA-GPIALLPIGDN-FSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSA  361 (515)
Q Consensus       285 ~~-~~-g~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (515)
                      +. +. +.+.++|++++ .+.+.+......   ....+.+.+.+.+...+.  +.+.                       
T Consensus       206 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~--~~~~-----------------------  257 (502)
T PRK06184        206 WPDGDMGMIALCPLPGTDLFQIQAPLPPGG---EPDLSADGLTALLAERTG--RTDI-----------------------  257 (502)
T ss_pred             ccCCCCcEEEEEEccCCCeEEEEEEcCCCc---cCCCCHHHHHHHHHHhcC--CCCc-----------------------
Confidence            43 33 67888898765 444445443321   123456666666665432  0000                       


Q ss_pred             cccccCCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchH
Q 010200          362 KECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEA  441 (515)
Q Consensus       362 ~~~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~  441 (515)
                               ..........|++..+.+++|..|||+|+|||||.++|+.|||+|+||+||.+|++.|...++.  .  ..
T Consensus       258 ---------~~~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g--~--~~  324 (502)
T PRK06184        258 ---------RLHSVTWASAFRMNARLADRYRVGRVFLAGDAAHVHPPAGGQGLNTSVQDAYNLGWKLAAVLAG--A--PE  324 (502)
T ss_pred             ---------ceeeeeeeeccccceeEhhhhcCCcEEEeccccccCCCcccccccchHHHHHHHHHHHHHHHcC--C--CH
Confidence                     0001112223666666678899999999999999999999999999999999999999987764  2  37


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Q 010200          442 SLLKKYEAERKPANIVMMAVLDGFQKAYS  470 (515)
Q Consensus       442 ~al~~Y~~~r~~~~~~~~~~s~~~~~~~~  470 (515)
                      .+|+.|+++|++++..++..++.+...+.
T Consensus       325 ~lL~~Ye~eR~p~~~~~~~~s~~~~~~~~  353 (502)
T PRK06184        325 ALLDTYEEERRPVAAAVLGLSTELLDAIK  353 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            89999999999999999999998887754

>PLN02985 squalene monooxygenase

Probab=100.00  E-value=9.4e-41  Score=348.21  Aligned_cols=399  Identities=16%  Similarity=0.133  Sum_probs=270.5

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhh
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQ  131 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~  131 (515)
                      ....+||+||||||+|+++|+.|++.    |++|+|+||.....          ....++.+++++.++|+++|+++.+.
T Consensus        40 ~~~~~DViIVGAG~aGlalA~aLa~~----G~~V~vlEr~~~~~----------~~~~g~~L~p~g~~~L~~LGl~d~l~  105 (514)
T PLN02985         40 KDGATDVIIVGAGVGGSALAYALAKD----GRRVHVIERDLREP----------ERMMGEFMQPGGRFMLSKLGLEDCLE  105 (514)
T ss_pred             cCCCceEEEECCCHHHHHHHHHHHHc----CCeEEEEECcCCCC----------ccccccccCchHHHHHHHcCCcchhh
Confidence            44678999999999999999999996    99999999986432          22347889999999999999999988


Q ss_pred             hhhccccceEEEEeCCCccceeeeccc--CCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCccc
Q 010200          132 QHRHAYFDKMQVWDYTGLGYTKYNARD--VNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISV  209 (515)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~  209 (515)
                      .....+..++.++.........++...  ......++.++|.+|.+.|++++.+.++++++.+ +++++..+        
T Consensus       106 ~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~--------  176 (514)
T PLN02985        106 GIDAQKATGMAVYKDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEE--------  176 (514)
T ss_pred             hccCcccccEEEEECCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEc--------
Confidence            765556777777764332233333211  1123446789999999999999988877998876 67776540        


Q ss_pred             CCCCCcccccccCCeeEEEcCCCc--EEEeeEEEEecCCCchhhhhcCCcccc-ccCCceEEEEEEEeecCCceEEEEec
Q 010200          210 DSTPSATTLFTKGHLAKLDLSDGT--SLYAKLVVGADGGKSRVRELAGFKTTG-WSYSQNAIICTVEHNKENYCAWQRFL  286 (515)
Q Consensus       210 ~~~~~~~~~~~~~~~~~v~~~~g~--~~~ad~vV~AdG~~S~vr~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (515)
                          ++     ...++++...+|+  ++.||+||+|||.+|.+|+.++..... ..+...++....... .....+..+.
T Consensus       177 ----~~-----~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~vR~~l~~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~~  246 (514)
T PLN02985        177 ----KG-----VIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSLNDNNAEVLSYQVGYISKNCRLE-EPEKLHLIMS  246 (514)
T ss_pred             ----CC-----EEEEEEEEcCCCCEEEEECCEEEECCCCchHHHHHhccCCCcceeEeEEEEEccccCC-CCCcceEEcC
Confidence                00     1123555555665  467999999999999999999654322 222221211111111 1233344556


Q ss_pred             CCCcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCcccccccccc
Q 010200          287 PAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFE  366 (515)
Q Consensus       287 ~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (515)
                      +++++.++|++++..++.+..+.+...   ..+..++...+.+...+.+           .+.+...+...         
T Consensus       247 ~~~~~l~ypi~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~~-----------p~~l~~~f~~~---------  303 (514)
T PLN02985        247 KPSFTMLYQISSTDVRCVFEVLPDNIP---SIANGEMSTFVKNTIAPQV-----------PPKLRKIFLKG---------  303 (514)
T ss_pred             CCceEEEEEeCCCeEEEEEEEeCCCCC---CcChhhHHHHHHhcccccc-----------CHHHHHHHHhh---------
Confidence            778999999998888887777544322   1222333333332111000           01111100000         


Q ss_pred             CCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHH
Q 010200          367 VPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKK  446 (515)
Q Consensus       367 i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~  446 (515)
                      +.+     ......+|....+...|..++++|||||||+++|++|||+|+|++||..|++.|.....-.+......+|+.
T Consensus       304 ~~~-----~~~~~~~p~~~l~~~~~~~~~vvLiGDAaH~~~P~~GQGmn~AleDA~vLa~lL~~~~~~~~~~~~~~aL~~  378 (514)
T PLN02985        304 IDE-----GAHIKVVPTKRMSATLSDKKGVIVLGDAFNMRHPAIASGMMVLLSDILILRRLLQPLSNLGNANKVSEVIKS  378 (514)
T ss_pred             ccc-----ccceeecCcccccccccCCCCEEEEecccccCCCCccccHhHHHHHHHHHHHHhhhcccccchhHHHHHHHH
Confidence            000     000112333332334555789999999999999999999999999999999999874211111123689999


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHhhc-CCCChHHHHHHHHHHhcccChhHHHHHHHHhhcCCCCCCCC
Q 010200          447 YEAERKPANIVMMAVLDGFQKAYS-VDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQRLPLPL  511 (515)
Q Consensus       447 Y~~~r~~~~~~~~~~s~~~~~~~~-~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  511 (515)
                      |++.|++++..++..+..++++|. .++..+..+|+..|+.+..=+...+-.+..++|+..+|+.+
T Consensus       379 y~~~Rk~r~~~i~~la~al~~~f~a~~~~~~~~l~~~~f~y~~~g~~~~~~~~~ll~~~~~~p~~l  444 (514)
T PLN02985        379 FYDIRKPMSATVNTLGNAFSQVLVASTDEAKEAMRQGCYDYLCSGGFRTSGMMALLGGMNPRPLSL  444 (514)
T ss_pred             HHHHhhcchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCccccccHHHHcCCCCCcHHH
Confidence            999999999999999999999996 45666899999999888776667788899999999998753

>PRK06475 salicylate hydroxylase; Provisional

Probab=100.00  E-value=1.1e-40  Score=341.45  Aligned_cols=353  Identities=17%  Similarity=0.181  Sum_probs=244.0

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      .+|+||||||+||++|+.|++.    |++|+||||.+.+.          ..++++.++++++++|+++|+++.+.+...
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~----G~~V~i~E~~~~~~----------~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~   68 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAAR----GWAVTIIEKAQELS----------EVGAGLQLAPNAMRHLERLGVADRLSGTGV   68 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhC----CCcEEEEecCCccC----------cCCccceeChhHHHHHHHCCChHHHhhccc
Confidence            5799999999999999999996    99999999988663          345689999999999999999999987665


Q ss_pred             cccceEEEEeCCCccce-eeecccC---CCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCC
Q 010200          136 AYFDKMQVWDYTGLGYT-KYNARDV---NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDS  211 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~  211 (515)
                       ....+.++++...... .......   ......+.++|.+|.+.|.+.+.+.++++++++++|++++.           
T Consensus        69 -~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~-----------  136 (400)
T PRK06475         69 -TPKALYLMDGRKARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQ-----------  136 (400)
T ss_pred             -CcceEEEecCCCcceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEec-----------
Confidence             3345555543222111 1111000   01112246899999999999998764599999999999975           


Q ss_pred             CCCcccccccCCeeEEEc---CCCcEEEeeEEEEecCCCchhhhhcCCccccccC-CceEEEEEEEeecC----------
Q 010200          212 TPSATTLFTKGHLAKLDL---SDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSY-SQNAIICTVEHNKE----------  277 (515)
Q Consensus       212 ~~~~~~~~~~~~~~~v~~---~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~-~~~~~~~~~~~~~~----------  277 (515)
                               ....+++++   .+++++.+|+||+|||.+|.||+.++..  ...| +..++.+.++....          
T Consensus       137 ---------~~~~v~v~~~~~~~~~~~~adlvIgADG~~S~vR~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  205 (400)
T PRK06475        137 ---------TGNSITATIIRTNSVETVSAAYLIACDGVWSMLRAKAGFS--KARFSGHIAWRTTLAADALPASFLSAMPE  205 (400)
T ss_pred             ---------CCCceEEEEEeCCCCcEEecCEEEECCCccHhHHhhcCCC--CCCcCCceEEEEEeehhhcchhhhhhccc
Confidence                     334466665   3345799999999999999999998652  2334 45555555543321          


Q ss_pred             CceEEEEecCCCcEEEEecCCCceEEEEEcC-CCChHH-hh-cCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccc
Q 010200          278 NYCAWQRFLPAGPIALLPIGDNFSNIVWTMN-PKDASD-CK-SMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFR  354 (515)
Q Consensus       278 ~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~-~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (515)
                      ......++.+++++.++|+.++....++... .+.... .. ..+.    +.+.+.+. +|.+...       +.     
T Consensus       206 ~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~-~~~~~~~-------~~-----  268 (400)
T PRK06475        206 HKAVSAWLGNKAHFIAYPVKGGKFFNFVAITGGENPGEVWSKTGDK----AHLKSIYA-DWNKPVL-------QI-----  268 (400)
T ss_pred             CCceEEEEcCCCEEEEEEccCCcEEEEEEEEcCCCCcccCCCCCCH----HHHHHHhc-CCChHHH-------HH-----
Confidence            1223445678899999999877543333322 211111 11 1122    23334343 4544311       11     


Q ss_pred             cCccccccccccCCcceEEeccceeeecccccccccc-ccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHh
Q 010200          355 GDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNY-VSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIA  433 (515)
Q Consensus       355 ~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~~~~-~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~  433 (515)
                                       ++.......||+......+| ..|||+|||||||+|+|+.|||+|+||+||..|+++|..   
T Consensus       269 -----------------i~~~~~~~~~~l~~~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~---  328 (400)
T PRK06475        269 -----------------LAAIDEWTYWPLFEMADAQFVGPDRTIFLGDASHAVTPFAAQGAAMAIEDAAALAEALDS---  328 (400)
T ss_pred             -----------------HhcCCceeECcCcccCCCcceecCCEEEEecccccCCchhhhhHHHHHHHHHHHHHHHhc---
Confidence                             11112233467766555555 579999999999999999999999999999999999963   


Q ss_pred             cCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhc
Q 010200          434 VGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGA  487 (515)
Q Consensus       434 ~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~  487 (515)
                        .++  ..+|+.|++.|++++..++..++. ...+....++....|+..+...
T Consensus       329 --~~~--~~aL~~Ye~~R~~r~~~~~~~s~~-~~~~~~~~~~~~~~r~~~~~~~  377 (400)
T PRK06475        329 --DDQ--SAGLKRFDSVRKERIAAVAKRGQL-NRFAYHATGIFALGRNMLFAIR  377 (400)
T ss_pred             --CCH--HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCCHHHHHHHHHHhhc
Confidence              133  689999999999999999999974 4444445567788899888655

>PRK07190 hypothetical protein; Provisional

Probab=100.00  E-value=1.1e-39  Score=339.03  Aligned_cols=338  Identities=18%  Similarity=0.201  Sum_probs=250.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      ..+||+||||||+||++|+.|++.    |++|+|+||.+.+          ...+++..++++++++|+.+|+++.+...
T Consensus         4 ~~~dVlIVGAGPaGL~lA~~Lar~----Gi~V~llEr~~~~----------~~~gra~~l~~~tle~L~~lGl~~~l~~~   69 (487)
T PRK07190          4 QVTDVVIIGAGPVGLMCAYLGQLC----GLNTVIVDKSDGP----------LEVGRADALNARTLQLLELVDLFDELYPL   69 (487)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHc----CCCEEEEeCCCcc----------cccccceEeCHHHHHHHHhcChHHHHHhh
Confidence            458999999999999999999996    9999999999876          23467889999999999999999998775


Q ss_pred             hccccceEEEEeCCCccceeee-cccC--CCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccC
Q 010200          134 RHAYFDKMQVWDYTGLGYTKYN-ARDV--NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVD  210 (515)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~  210 (515)
                      .. +.....+|........... ....  ......+.+.+..++..|.+.+.+.| ++|+++++|++++.          
T Consensus        70 ~~-~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~G-v~v~~~~~v~~l~~----------  137 (487)
T PRK07190         70 GK-PCNTSSVWANGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAG-AAVKRNTSVVNIEL----------  137 (487)
T ss_pred             Cc-cceeEEEecCCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCC-CEEEeCCEEEEEEE----------
Confidence            54 4444455543221100000 0001  11223466889999999999999987 99999999999987          


Q ss_pred             CCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeec--CC-ceEEEEecC
Q 010200          211 STPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK--EN-YCAWQRFLP  287 (515)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~  287 (515)
                                +.+.+.+.+.+|++++|++||+|||.+|.+|+.+|++..+..+...+....+....  +. ........+
T Consensus       138 ----------~~~~v~v~~~~g~~v~a~~vVgADG~~S~vR~~lgi~f~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  207 (487)
T PRK07190        138 ----------NQAGCLTTLSNGERIQSRYVIGADGSRSFVRNHFNVPFEIIRPQIIWAVIDGVIDTDFPKVPEIIVFQAE  207 (487)
T ss_pred             ----------cCCeeEEEECCCcEEEeCEEEECCCCCHHHHHHcCCCccccccceeEEEEEEEEccCCCCCcceEEEEcC
Confidence                      33456777778889999999999999999999999887766655444444333332  21 122223356


Q ss_pred             CCcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccC
Q 010200          288 AGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEV  367 (515)
Q Consensus       288 ~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  367 (515)
                      .+.++++|.+++...++....      ....+.+++.+.+...+. ++.                              +
T Consensus       208 ~g~~~~~p~~~~~~r~~~~~~------~~~~t~~~~~~~l~~~~~-~~~------------------------------~  250 (487)
T PRK07190        208 TSDVAWIPREGEIDRFYVRMD------TKDFTLEQAIAKINHAMQ-PHR------------------------------L  250 (487)
T ss_pred             CCCEEEEECCCCEEEEEEEcC------CCCCCHHHHHHHHHHhcC-CCC------------------------------C
Confidence            788999999876655433321      123566777777766442 100                              0


Q ss_pred             CcceEEeccceeeeccccccccccc-cCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHH
Q 010200          368 PPRVVKLASERMVFPLSLKHANNYV-SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKK  446 (515)
Q Consensus       368 ~~~~~~~~~~~~~~p~~~~~~~~~~-~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~  446 (515)
                      .   .........|++..+.+++|. .|||+|+|||||.++|+.|||+|++|+||.+|++.|...++..   .....|+.
T Consensus       251 ~---~~~~~w~s~~~~~~r~a~~~r~~gRV~LaGDAAH~h~P~gGQGmN~giqDA~nL~wkLa~v~~g~---a~~~lLdt  324 (487)
T PRK07190        251 G---FKEIVWFSQFSVKESVAEHFFIQDRIFLAGDACHIHSVNGGQGLNTGLADAFNLIWKLNMVIHHG---ASPELLQS  324 (487)
T ss_pred             c---eEEEEEEEEeeeCcEehhhcCcCCcEEEEecccccCCCccccchhhhHHHHHHHHHHHHHHHcCC---CcHHHHHH
Confidence            0   111223345888888999996 7999999999999999999999999999999999999887643   24789999


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHhhc
Q 010200          447 YEAERKPANIVMMAVLDGFQKAYS  470 (515)
Q Consensus       447 Y~~~r~~~~~~~~~~s~~~~~~~~  470 (515)
                      |+++|++.+..++..++.+.++..
T Consensus       325 Y~~eR~p~a~~vl~~t~~~~~~~~  348 (487)
T PRK07190        325 YEAERKPVAQGVIETSGELVRSTK  348 (487)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcc
Confidence            999999999999999998888653

>PRK08163 salicylate hydroxylase; Provisional

Probab=100.00  E-value=4.2e-40  Score=337.37  Aligned_cols=360  Identities=18%  Similarity=0.242  Sum_probs=253.6

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      .+.||+||||||+||++|+.|++.    |++|+||||.+.++          ..++++.+++++.++|+.+|+++.+.+.
T Consensus         3 ~~~~V~IvGaGiaGl~~A~~L~~~----g~~v~v~Er~~~~~----------~~g~gi~l~~~~~~~l~~lg~~~~~~~~   68 (396)
T PRK08163          3 KVTPVLIVGGGIGGLAAALALARQ----GIKVKLLEQAAEIG----------EIGAGIQLGPNAFSALDALGVGEAARQR   68 (396)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhC----CCcEEEEeeCcccc----------cccceeeeCchHHHHHHHcCChHHHHhh
Confidence            458999999999999999999996    99999999998763          2355899999999999999999988776


Q ss_pred             hccccceEEEEeCC-CccceeeecccC---CCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCccc
Q 010200          134 RHAYFDKMQVWDYT-GLGYTKYNARDV---NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISV  209 (515)
Q Consensus       134 ~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~  209 (515)
                      .. ....+.+++.. +.....++....   ......+.++|.+|.+.|.+.+.+.++++++++++|++++.         
T Consensus        69 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~---------  138 (396)
T PRK08163         69 AV-FTDHLTMMDAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQ---------  138 (396)
T ss_pred             cc-CCcceEEEeCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEec---------
Confidence            54 55667776542 222222221110   11122357899999999999998876699999999999975         


Q ss_pred             CCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC-----ceEEEE
Q 010200          210 DSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-----YCAWQR  284 (515)
Q Consensus       210 ~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  284 (515)
                                 .++.+++.+.+|+++.+|+||+|||.+|.+|+.+... .....+...+.+.++.....     ......
T Consensus       139 -----------~~~~v~v~~~~g~~~~ad~vV~AdG~~S~~r~~~~g~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  206 (396)
T PRK08163        139 -----------DGDGVTVFDQQGNRWTGDALIGCDGVKSVVRQSLVGD-APRVTGHVVYRAVIDVDDMPEDLRINAPVLW  206 (396)
T ss_pred             -----------CCCceEEEEcCCCEEecCEEEECCCcChHHHhhccCC-CCCccccEEEEEEEeHHHCcchhccCccEEE
Confidence                       3355888888998999999999999999999998322 22334455555666543211     122334


Q ss_pred             ecCCCcEEEEecCCCc-eEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccc
Q 010200          285 FLPAGPIALLPIGDNF-SNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKE  363 (515)
Q Consensus       285 ~~~~g~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (515)
                      ..++++++++|+.++. ++++|.............  ......+.+.|. +|.+..       .+.+..           
T Consensus       207 ~g~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~-~~~~~~-------~~~~~~-----------  265 (396)
T PRK08163        207 AGPHCHLVHYPLRGGEQYNLVVTFHSREQEEWGVK--DGSKEEVLSYFE-GIHPRP-------RQMLDK-----------  265 (396)
T ss_pred             EcCCceEEEEEecCCeEEEEEEEECCCCCcccccC--CCCHHHHHHHHc-CCChHH-------HHHHhc-----------
Confidence            4567788899997764 455665543322111111  111233344444 343321       111110           


Q ss_pred             cccCCcceEEeccceeeecccc-ccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHH
Q 010200          364 CFEVPPRVVKLASERMVFPLSL-KHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEAS  442 (515)
Q Consensus       364 ~~~i~~~~~~~~~~~~~~p~~~-~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~  442 (515)
                                 ......+++.. .+.++|..+||+|+|||||+|+|+.|||+|+||+||..|+++|...   ..++  ..
T Consensus       266 -----------~~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~---~~~~--~~  329 (396)
T PRK08163        266 -----------PTSWKRWATADREPVAKWSTGRVTLLGDAAHPMTQYMAQGACMALEDAVTLGKALEGC---DGDA--EA  329 (396)
T ss_pred             -----------CCceeEccccCCCcccccccCcEEEEecccccCCcchhccHHHHHHHHHHHHHHHHhc---cccH--HH
Confidence                       00011122211 2457888999999999999999999999999999999999999752   2233  78


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhc
Q 010200          443 LLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGA  487 (515)
Q Consensus       443 al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~  487 (515)
                      +|+.|+++|++++..++..++.+..+++.. .....+|+..+...
T Consensus       330 al~~y~~~R~~r~~~~~~~s~~~~~~~~~~-~~~~~~r~~~~~~~  373 (396)
T PRK08163        330 AFALYESVRIPRTARVVLSAREMGRIYHAK-GVERQVRNLLWKGR  373 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHhhCCC-CHHHHHHHHHhhcc
Confidence            999999999999999999999999999876 67788888877665

>PRK05868 hypothetical protein; Validated

Probab=100.00  E-value=1.3e-39  Score=329.24  Aligned_cols=358  Identities=17%  Similarity=0.158  Sum_probs=248.8

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      .||+||||||+||++|+.|++.    |++|+||||.+.++          ..+.++.+.++++++|+++|+++.+.+...
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~----G~~v~viE~~~~~~----------~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~   67 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRH----GYSVTMVERHPGLR----------PGGQAIDVRGPALDVLERMGLLAAAQEHKT   67 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhC----CCCEEEEcCCCCCC----------CCceeeeeCchHHHHHHhcCCHHHHHhhcc
Confidence            3899999999999999999996    99999999998773          234578899999999999999998877554


Q ss_pred             cccceEEEEeCCCccceeeeccc-C--CCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCC
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARD-V--NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~  212 (515)
                       ....+.+++..+.......... .  ......+.+.|.+|.+.|.+.+. .+ ++++++++|++++.            
T Consensus        68 -~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~-~~-v~i~~~~~v~~i~~------------  132 (372)
T PRK05868         68 -RIRGASFVDRDGNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQ-PS-VEYLFDDSISTLQD------------  132 (372)
T ss_pred             -CccceEEEeCCCCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhcc-CC-cEEEeCCEEEEEEe------------
Confidence             6677777765543222211100 1  11122457889999998876543 34 89999999999976            


Q ss_pred             CCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCcccc--ccCCceEEEEEEEeecCCceEEEE-ecCCC
Q 010200          213 PSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTG--WSYSQNAIICTVEHNKENYCAWQR-FLPAG  289 (515)
Q Consensus       213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g  289 (515)
                              +++.+++++++|+++++|+||+|||.+|.+|+.+......  ..++....++.++...+......+ +.++.
T Consensus       133 --------~~~~v~v~~~dg~~~~adlvIgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~  204 (372)
T PRK05868        133 --------DGDSVRVTFERAAAREFDLVIGADGLHSNVRRLVFGPEEQFVKRLGTHAAIFTVPNFLELDYWQTWHYGDST  204 (372)
T ss_pred             --------cCCeEEEEECCCCeEEeCEEEECCCCCchHHHHhcCCcccceeecceEEEEEEcCCCCCCCcceEEEecCCc
Confidence                    4466899999999999999999999999999998433221  233444444444332222223333 34556


Q ss_pred             cEEEEecCCC-ceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcC-CCCCCCCCCCCCcccchhccccCccccccccccC
Q 010200          290 PIALLPIGDN-FSNIVWTMNPKDASDCKSMNEDDFVKILNHALDY-GYGPHPKSISSGSVDMFSWFRGDATLSAKECFEV  367 (515)
Q Consensus       290 ~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  367 (515)
                      .+.++|..++ ..+.++.+....... .....+...+.+.+.|.. +|... .        .++. +.            
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~f~~~~w~~~-~--------l~~~-~~------------  261 (372)
T PRK05868        205 MAGVYSARNNTEARAALAFMDTELRI-DYRDTEAQFAELQRRMAEDGWVRA-Q--------LLHY-MR------------  261 (372)
T ss_pred             EEEEEecCCCCceEEEEEEecCCccc-ccCChHHHHHHHHHHHhhCCCchH-H--------HHhh-cc------------
Confidence            6778888764 434444333221111 112234456666666642 34321 0        1111 00            


Q ss_pred             CcceEEeccceeeec-cccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHH
Q 010200          368 PPRVVKLASERMVFP-LSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKK  446 (515)
Q Consensus       368 ~~~~~~~~~~~~~~p-~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~  446 (515)
                            .. ....++ +...++++|+.|||+|||||||+++|+.|||+|+||+||..|++.|...   ..++  ..+|+.
T Consensus       262 ------~~-~~~~~~~~~~~~~~~w~~grv~LvGDAAH~~~P~~GqGa~~AleDa~~La~~L~~~---~~~~--~~al~~  329 (372)
T PRK05868        262 ------SA-PDFYFDEMSQILMDRWSRGRVALVGDAGYCCSPLSGQGTSVALLGAYILAGELKAA---GDDY--QLGFAN  329 (372)
T ss_pred             ------cC-CceeeccceEEecCCCCCCCeeeeecccccCCCccCccHHHHHHHHHHHHHHHHhc---CCCH--HHHHHH
Confidence                  00 000122 3334568999999999999999999999999999999999999999763   2244  889999


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 010200          447 YEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFH  485 (515)
Q Consensus       447 Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~  485 (515)
                      |++.++++..+.+.........|...+.+..++|+..+.
T Consensus       330 ye~~~~~~~~~~q~~~~~~~~~~~p~~~~~~~~~~~~~~  368 (372)
T PRK05868        330 YHAEFHGFVERNQWLVSDNIPGGAPIPQEEFERIVHSIT  368 (372)
T ss_pred             HHHHHhHHHHHhhhhhhccCCcccCCCHHHHHHhhcccc
Confidence            999999999999999999999999988888888877664

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=100.00  E-value=1.2e-38  Score=324.66  Aligned_cols=378  Identities=15%  Similarity=0.095  Sum_probs=252.4

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      .+||+||||||+|+++|+.|++.    |++|+||||.+...        .....+...++++++++|+++|+++.+...+
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~----G~~v~viE~~~~~~--------~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~   69 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKA----GIDNVILERQSRDY--------VLGRIRAGVLEQGTVDLLREAGVDERMDREG   69 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHC----CCCEEEEECCCCcc--------cCCceeEeeECHHHHHHHHHCCChHHHHhcC
Confidence            47999999999999999999996    99999999998531        0112345568999999999999999998865


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                      . +...+.+++......+.+.  ............+..+...|.+.+.+.| +.++++++++.+..              
T Consensus        70 ~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~~~~g-~~~~~~~~~v~~~~--------------  131 (390)
T TIGR02360        70 L-VHEGTEIAFDGQRFRIDLK--ALTGGKTVMVYGQTEVTRDLMEAREAAG-LTTVYDADDVRLHD--------------  131 (390)
T ss_pred             c-eecceEEeeCCEEEEEecc--ccCCCceEEEeCHHHHHHHHHHHHHhcC-CeEEEeeeeEEEEe--------------
Confidence            5 5666666654332222222  2111112223457889999999988877 88999998888753              


Q ss_pred             cccccccCCeeEEEcC-CCc--EEEeeEEEEecCCCchhhhhcCCccccccCCc--eEEEEEEEeecCCceEEEEecCCC
Q 010200          215 ATTLFTKGHLAKLDLS-DGT--SLYAKLVVGADGGKSRVRELAGFKTTGWSYSQ--NAIICTVEHNKENYCAWQRFLPAG  289 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~-~g~--~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g  289 (515)
                           .+...+.|++. +|+  ++++|+||+|||.+|.||++++..........  ..+.+.+..............++.
T Consensus       132 -----~~~~~~~V~~~~~g~~~~i~adlvIGADG~~S~VR~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  206 (390)
T TIGR02360       132 -----LAGDRPYVTFERDGERHRLDCDFIAGCDGFHGVSRASIPAEVLKEFERVYPFGWLGILSETPPVSHELIYSNHER  206 (390)
T ss_pred             -----cCCCccEEEEEECCeEEEEEeCEEEECCCCchhhHHhcCcccceeeeccCCcceEEEecCCCCCCCceEEEeCCC
Confidence                 01233455564 665  68999999999999999999854332111111  122232322111111122334566


Q ss_pred             cEEEEecCC-CceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCC
Q 010200          290 PIALLPIGD-NFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVP  368 (515)
Q Consensus       290 ~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  368 (515)
                      .+.++|+.+ +...+++......  .......+.+.+.+.+.+.    +.       ..+.+..               .
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~----~~-------~~~~~~~---------------~  258 (390)
T TIGR02360       207 GFALCSMRSATRSRYYVQVPLTD--KVEDWSDDRFWAELKRRLP----SE-------AAERLVT---------------G  258 (390)
T ss_pred             ceEEEeccCCCcceEEEEcCCCC--ChhhCChhHHHHHHHHhcC----ch-------hhhhhcc---------------C
Confidence            677777754 3333455443322  1223445556666666442    10       0000000               0


Q ss_pred             cceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHH
Q 010200          369 PRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYE  448 (515)
Q Consensus       369 ~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~  448 (515)
                      +.     .....+|+.....++|..|||+|||||||.|+|+.|||+|+||+||..|+++|......  +  ...+|+.|+
T Consensus       259 ~~-----~~~~~~~l~~~~~~~~~~grvvLvGDAAH~~~P~~GQG~n~aieDA~~La~~L~~~~~~--~--~~~al~~Y~  329 (390)
T TIGR02360       259 PS-----IEKSIAPLRSFVCEPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVHYLYEALLEHYQE--G--SSAGIEGYS  329 (390)
T ss_pred             Cc-----cceeeeeHHhhccccCccCCEEEEEccccCCCCCcCCchhHHHHHHHHHHHHHHHHhcc--C--hHHHHHHHH
Confidence            00     00123456555678899999999999999999999999999999999999999875432  2  378999999


Q ss_pred             HHhhHHHHHHHHHHHHHHHhhcCC---CChHHHHHHHHHHhcccChhHHHHHHHHhhcC
Q 010200          449 AERKPANIVMMAVLDGFQKAYSVD---FGPLNILRAAAFHGAQYISPLKRNIISYASGE  504 (515)
Q Consensus       449 ~~r~~~~~~~~~~s~~~~~~~~~~---~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~  504 (515)
                      +.|++++..++..++.+..+++..   ......++.+-+..+-..|.-+..+..+..|.
T Consensus       330 ~~R~~r~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (390)
T TIGR02360       330 ARALARVWKAERFSWWMTSLLHRFPDTDAFDQRIQQAELEYLLGSEAAQATLAENYVGL  388 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHhCCHHHHHHHHHhccCC
Confidence            999999999999999999987643   23344566666777777788888888888885

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=100.00  E-value=3.7e-40  Score=332.60  Aligned_cols=334  Identities=24%  Similarity=0.375  Sum_probs=223.1

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      +||+||||||+||++|+.|++.    |++|+||||.+.+.          ..++++.+.++++++|+.+|+++.+.+...
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~----G~~v~i~E~~~~~~----------~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~   67 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARA----GIDVTIIERRPDPR----------PKGRGIGLSPNSLRILQRLGLLDEILARGS   67 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHT----TCEEEEEESSSSCC----------CSSSSEEEEHHHHHHHHHTTEHHHHHHHSE
T ss_pred             ceEEEECCCHHHHHHHHHHHhc----ccccccchhccccc----------ccccccccccccccccccccchhhhhhhcc
Confidence            7999999999999999999996    99999999999874          334589999999999999999999888764


Q ss_pred             cc-cceEEEEeC--CCc-----cceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCc
Q 010200          136 AY-FDKMQVWDY--TGL-----GYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSI  207 (515)
Q Consensus       136 ~~-~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~  207 (515)
                      .. .....++..  ...     ................+.+.|..|.+.|.+.+++.| +++++++++++++.       
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~g-v~i~~~~~v~~~~~-------  139 (356)
T PF01494_consen   68 PHEVMRIFFYDGISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERG-VDIRFGTRVVSIEQ-------  139 (356)
T ss_dssp             EECEEEEEEEEETTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHT-EEEEESEEEEEEEE-------
T ss_pred             cccceeeEeecccCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhh-hhheeeeecccccc-------
Confidence            22 223333333  000     011111111223344578999999999999999998 99999999999976       


Q ss_pred             ccCCCCCcccccccCCeeEEEc--C-CCc--EEEeeEEEEecCCCchhhhhcCCccccccCC--ceEEEEEEEeecC--C
Q 010200          208 SVDSTPSATTLFTKGHLAKLDL--S-DGT--SLYAKLVVGADGGKSRVRELAGFKTTGWSYS--QNAIICTVEHNKE--N  278 (515)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~v~~--~-~g~--~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~--~~~~~~~~~~~~~--~  278 (515)
                                   +...+++.+  . +|+  +++||+||+|||.+|.+|+.++...+...+.  ..++...+....+  .
T Consensus       140 -------------d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (356)
T PF01494_consen  140 -------------DDDGVTVVVRDGEDGEEETIEADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFDSDLSDPW  206 (356)
T ss_dssp             -------------ETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEECHSHTTT
T ss_pred             -------------cccccccccccccCCceeEEEEeeeecccCcccchhhhccccccCcccccccccccccccccccccc
Confidence                         223344333  3 343  7999999999999999999998764433322  2222222222111  1


Q ss_pred             c-eEEEEecCCCcEEEEecCC-CceEEEEEcCCCC--hHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccc
Q 010200          279 Y-CAWQRFLPAGPIALLPIGD-NFSNIVWTMNPKD--ASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFR  354 (515)
Q Consensus       279 ~-~~~~~~~~~g~~~~~p~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (515)
                      . ..+....+.+.++++|..+ +...+.+.+....  .........+.+.+.+...+.                   +..
T Consensus       207 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~  267 (356)
T PF01494_consen  207 EDHCFIYSPPSGGFAIIPLENGDRSRFVWFLPFDESKEERPEEFSPEELFANLPEIFG-------------------PDL  267 (356)
T ss_dssp             SCEEEEEEETTEEEEEEEETTTTEEEEEEEEETTTTTCCSTHCHHHHHHHHHHHHHHH-------------------TCH
T ss_pred             ccccccccccccceeEeeccCCccceEEEeeecccccccccccccccccccccccccc-------------------ccc
Confidence            2 2444445556678999988 4444444443222  112222233444444444322                   000


Q ss_pred             cCccccccccccCCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhc
Q 010200          355 GDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAV  434 (515)
Q Consensus       355 ~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~  434 (515)
                                  ...    .......+++..+...+|..++|+|||||||+|+|+.|||+|+||+||..|++.|...++.
T Consensus       268 ------------~~~----~~~~~~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~~~g  331 (356)
T PF01494_consen  268 ------------LET----EIDEISAWPIPQRVADRWVKGRVLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAALKG  331 (356)
T ss_dssp             ------------HHH----EEEEEEEEEEEEEEESSSEETTEEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ------------ccc----ccccccccccccccccccccceeEEeccceeeecccccCCCCcccccHHHHHHHHHHHhcC
Confidence                        000    1112234666666778899999999999999999999999999999999999999998753


Q ss_pred             CCCcchHHHHHHHHHHhhHHHHHHHHHH
Q 010200          435 GADIGEASLLKKYEAERKPANIVMMAVL  462 (515)
Q Consensus       435 ~~~~~~~~al~~Y~~~r~~~~~~~~~~s  462 (515)
                      .   ....+|+.|+++|+++++++++.+
T Consensus       332 ~---~~~~~l~~Y~~~r~~~~~~~~~~~  356 (356)
T PF01494_consen  332 E---ASEEALKAYEQERRPRARKAVQFD  356 (356)
T ss_dssp             S---SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C---cHHHHHHHHHHHHHHHHHHHHhCC
Confidence            2   347899999999999999988753

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PTZ00367 squalene epoxidase; Provisional

Probab=100.00  E-value=4.5e-39  Score=336.87  Aligned_cols=391  Identities=18%  Similarity=0.126  Sum_probs=260.8

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      ..+||+||||||+|+++|+.|++.    |++|+|+||.+...         .....|..+++++.++|+++|+++.+.+.
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~----G~~V~VlEr~~~~~---------~~r~~G~~L~p~g~~~L~~LGL~d~l~~i   98 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQ----GRKVLMLERDLFSK---------PDRIVGELLQPGGVNALKELGMEECAEGI   98 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhc----CCEEEEEccccccc---------cchhhhhhcCHHHHHHHHHCCChhhHhhc
Confidence            469999999999999999999996    99999999986210         11234678999999999999999988776


Q ss_pred             hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHH--hcCCCceEEcCCeeEEEEeCCCCCCcccCC
Q 010200          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCM--QNTEFQKTIYPSRLTSMALLPSSSSISVDS  211 (515)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~  211 (515)
                      .. +..++.+++.++.. ...+.   .....++.+++..+.+.|++.+  ...++++++. .+|+++..+....      
T Consensus        99 ~~-~~~~~~v~~~~G~~-~~i~~---~~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~-~~v~~l~~~~~~~------  166 (567)
T PTZ00367         99 GM-PCFGYVVFDHKGKQ-VKLPY---GAGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLE-GTVNSLLEEGPGF------  166 (567)
T ss_pred             Cc-ceeeeEEEECCCCE-EEecC---CCCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEE-eEEEEeccccCcc------
Confidence            65 57777777754432 12221   1223456788999999999887  3334588875 4788875411100      


Q ss_pred             CCCcccccccCCeeEEEcC-----------------------CCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEE
Q 010200          212 TPSATTLFTKGHLAKLDLS-----------------------DGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAI  268 (515)
Q Consensus       212 ~~~~~~~~~~~~~~~v~~~-----------------------~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~  268 (515)
                             .+...++++++.                       +++++.+|+||+|||.+|.+|+.++.......+...+.
T Consensus       167 -------~~~v~gV~~~~~~~~~~~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~~  239 (567)
T PTZ00367        167 -------SERAYGVEYTEAEKYDVPENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPASENHSHFV  239 (567)
T ss_pred             -------CCeeEEEEEecCCcccccccccccccccccccccccceEEEeCEEEECCCcchHHHHHccCCCCCcCcceEEE
Confidence                   000122333333                       36689999999999999999999975443334444332


Q ss_pred             EEEEE-eecCC-ceEEEEecCCCcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCc
Q 010200          269 ICTVE-HNKEN-YCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGS  346 (515)
Q Consensus       269 ~~~~~-~~~~~-~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (515)
                      ...+. ...+. .....++.++++++++|+.++..++++....+...     +.++....+.+.+.+.+.+.       .
T Consensus       240 g~~~~~~~lp~~~~~~v~~g~~gpi~~yPl~~~~~r~lv~~~~~~~p-----~~~~~~~~l~~~~~p~l~~~-------l  307 (567)
T PTZ00367        240 GLVLKNVRLPKEQHGTVFLGKTGPILSYRLDDNELRVLVDYNKPTLP-----SLEEQSEWLIEDVAPHLPEN-------M  307 (567)
T ss_pred             EEEEecccCCCCCeeEEEEcCCceEEEEEcCCCeEEEEEEecCCcCC-----ChHHHHHHHHHhhcccCcHH-------H
Confidence            22221 11222 23344568899999999998877655544332111     11122223322211011000       0


Q ss_pred             ccchhccccCccccccccccCCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHH
Q 010200          347 VDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSR  426 (515)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~  426 (515)
                      .+.+...+.                  .......+|....+...|..++++|||||||+|+|++|||+|+||+||..|++
T Consensus       308 ~~~f~~~l~------------------~~~~l~~~p~~~~p~~~~~~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~  369 (567)
T PTZ00367        308 RESFIRASK------------------DTKRIRSMPNARYPPAFPSIKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAK  369 (567)
T ss_pred             HHHHHHhhc------------------ccCCeEEeeHhhCCCccCCCCCEEEEEcccCCCCCcccccHHHHHHHHHHHHH
Confidence            111111000                  00111124444445556778899999999999999999999999999999999


Q ss_pred             HHHHhHh-cCCCcc----hHHHHH----HHHHHhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHH
Q 010200          427 IIAEGIA-VGADIG----EASLLK----KYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNI  497 (515)
Q Consensus       427 ~l~~~~~-~~~~~~----~~~al~----~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~  497 (515)
                      .|..... .+.+.+    ...+|+    .|++.|++++..++..++.+.++|+.     ..+|+..|+.+..=.....-.
T Consensus       370 ~L~~~~~~~~~d~~d~~~v~~aL~~~~~~Y~~~Rk~~a~~i~~ls~aL~~lf~~-----~~lr~~~~~y~~~gg~~~~~p  444 (567)
T PTZ00367        370 SLTGIKSLRSIDQNEMAEIEDAIQAAILSYARNRKTHASTINILSWALYSVFSS-----PALRDACLDYFSLGGECVTGP  444 (567)
T ss_pred             HHHhhhcccCCCchhHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHhCh-----HHHHHHHHHHHhcCCcccccc
Confidence            9986432 111221    156677    99999999999999999999999987     569999999988766677888


Q ss_pred             HHHhhcCCCCCCCC
Q 010200          498 ISYASGEQRLPLPL  511 (515)
Q Consensus       498 ~~~~~g~~~~~~~~  511 (515)
                      +..++|+...|+.+
T Consensus       445 ~~ll~g~~~~p~~l  458 (567)
T PTZ00367        445 MSLLSGLDPSPGGL  458 (567)
T ss_pred             HHHHcCCCCCcHHH
Confidence            99999999998753

>PRK06126 hypothetical protein; Provisional

Probab=100.00  E-value=1.6e-38  Score=337.99  Aligned_cols=343  Identities=22%  Similarity=0.308  Sum_probs=237.8

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhh
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQ  131 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~  131 (515)
                      .+..+||+||||||+||++|+.|++.    |++|+||||.+.+          ...+++..++++++++|+++|+++.+.
T Consensus         4 ~~~~~~VlIVGaGpaGL~~Al~La~~----G~~v~viEr~~~~----------~~~~ra~~l~~r~~e~L~~lGl~~~l~   69 (545)
T PRK06126          4 NTSETPVLIVGGGPVGLALALDLGRR----GVDSILVERKDGT----------AFNPKANTTSARSMEHFRRLGIADEVR   69 (545)
T ss_pred             CCccCCEEEECCCHHHHHHHHHHHHC----CCcEEEEeCCCCC----------CCCCccccCCHHHHHHHHhcChHHHHH
Confidence            34568999999999999999999996    9999999998765          344668899999999999999999998


Q ss_pred             hhhccc--cceEEEE-eCCCccceeeecccC--------------CCCcceEEechHHHHHHHHHHHhcCCCceEEcCCe
Q 010200          132 QHRHAY--FDKMQVW-DYTGLGYTKYNARDV--------------NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSR  194 (515)
Q Consensus       132 ~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~--------------~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~  194 (515)
                      +.+...  .....++ ...+.....+.....              ..+...+.++|..|...|.+.+.+.++++|+++++
T Consensus        70 ~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~  149 (545)
T PRK06126         70 SAGLPVDYPTDIAYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHR  149 (545)
T ss_pred             hhcCCccccCCceEEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccE
Confidence            865421  1111122 112211111111100              11223467889999999999998775599999999


Q ss_pred             eEEEEeCCCCCCcccCCCCCcccccccCCeeEEEc---CCCc--EEEeeEEEEecCCCchhhhhcCCccccccCCceEEE
Q 010200          195 LTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---SDGT--SLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAII  269 (515)
Q Consensus       195 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~g~--~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~  269 (515)
                      |++++.                    +.+.+++.+   .+|+  ++.+|+||+|||++|.||+.++....+..+....+.
T Consensus       150 v~~i~~--------------------~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~~~  209 (545)
T PRK06126        150 LTDFEQ--------------------DADGVTATVEDLDGGESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDLS  209 (545)
T ss_pred             EEEEEE--------------------CCCeEEEEEEECCCCcEEEEEEEEEEecCCcchHHHHhcCCccccCCCcceEEE
Confidence            999976                    233455554   3354  789999999999999999999887766665444444


Q ss_pred             EEEEeec-----CCc--eEEEEecCCCcEEEEecCCCceEEEEE-cCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCC
Q 010200          270 CTVEHNK-----ENY--CAWQRFLPAGPIALLPIGDNFSNIVWT-MNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKS  341 (515)
Q Consensus       270 ~~~~~~~-----~~~--~~~~~~~~~g~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (515)
                      ..+..+.     ...  ..+..+.++....+++...+. .+.+. .....  .....+.+.+.+.+.+.+.    +.   
T Consensus       210 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~---  279 (545)
T PRK06126        210 IYIRAPGLAALVGHDPAWMYWLFNPDRRGVLVAIDGRD-EWLFHQLRGGE--DEFTIDDVDARAFVRRGVG----ED---  279 (545)
T ss_pred             EEEEcCchHHHhcCCCceEEEEECCCccEEEEEECCCC-eEEEEEecCCC--CCCCCCHHHHHHHHHHhcC----CC---
Confidence            4443321     111  223334566666666765443 22222 22221  1123456667777766442    10   


Q ss_pred             CCCCcccchhccccCccccccccccCCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHH
Q 010200          342 ISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDA  421 (515)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da  421 (515)
                                               ++..+...    ..|++....+++|..|||+|+|||||.|+|+.|||+|+||+||
T Consensus       280 -------------------------~~~~i~~~----~~w~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~N~gieDa  330 (545)
T PRK06126        280 -------------------------IDYEVLSV----VPWTGRRLVADSYRRGRVFLAGDAAHLFTPTGGYGMNTGIGDA  330 (545)
T ss_pred             -------------------------CCeEEEee----cccchhheehhhhccCCEEEechhhccCCCCcCcccchhHHHH
Confidence                                     11111111    1255555678899999999999999999999999999999999


Q ss_pred             HHHHHHHHHhHhcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Q 010200          422 STLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYS  470 (515)
Q Consensus       422 ~~La~~l~~~~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~  470 (515)
                      .+|+++|...++.   ++...+|+.|+++|++++..++..+......+.
T Consensus       331 ~~La~~La~~~~~---~~~~~lL~~Y~~eR~p~~~~~~~~s~~~~~~~~  376 (545)
T PRK06126        331 VNLAWKLAAVLNG---WAGPALLDSYEAERRPIAARNTDYARRNADALG  376 (545)
T ss_pred             HHHHHHHHHHHcC---CCcHHHHhhhHHHhhHHHHHHHHHHHHHHHHhc
Confidence            9999999987653   234789999999999999999999988776554

>PRK07538 hypothetical protein; Provisional

Probab=100.00  E-value=1.1e-38  Score=328.12  Aligned_cols=341  Identities=19%  Similarity=0.217  Sum_probs=229.1

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      +||+||||||+||++|+.|++.    |++|+||||.+.++          ..+.++.++++++++|+++|+++.+.....
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~----G~~v~v~E~~~~~~----------~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~   66 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQR----GIEVVVFEAAPELR----------PLGVGINLLPHAVRELAELGLLDALDAIGI   66 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhC----CCcEEEEEcCCccc----------ccCcceeeCchHHHHHHHCCCHHHHHhhCC
Confidence            4899999999999999999996    99999999998662          345689999999999999999999877655


Q ss_pred             cccceEEEEeCCCccceeeeccc-CCCCcceEEechHHHHHHHHHHHhc-CCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARD-VNKEILGCVVENKVLHSSLLSCMQN-TEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~~~-~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~  213 (515)
                       +...+.+++..+......+... .......+.++|..|.+.|.+.+.+ .|..+|+++++|++++.             
T Consensus        67 -~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~-------------  132 (413)
T PRK07538         67 -RTRELAYFNRHGQRIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQ-------------  132 (413)
T ss_pred             -CCcceEEEcCCCCEEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEe-------------
Confidence             5566777665443222211111 1112234679999999999999866 46457999999999976             


Q ss_pred             CcccccccCCeeEEEcCCC-----cEEEeeEEEEecCCCchhhhhcCCccccccCC-ceEEEEEEEeecCC-ceEEEEec
Q 010200          214 SATTLFTKGHLAKLDLSDG-----TSLYAKLVVGADGGKSRVRELAGFKTTGWSYS-QNAIICTVEHNKEN-YCAWQRFL  286 (515)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g-----~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~  286 (515)
                             ....+.+.+.++     +++.||+||+|||.+|.+|++++.......|. ...+.+.++.+... ...+..+.
T Consensus       133 -------~~~~~~~~~~~~~~g~~~~~~adlvIgADG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g  205 (413)
T PRK07538        133 -------DADVTVVFLGDRAGGDLVSVRGDVLIGADGIHSAVRAQLYPDEGPPRWNGVMMWRGVTEAPPFLTGRSMVMAG  205 (413)
T ss_pred             -------cCCceEEEEeccCCCccceEEeeEEEECCCCCHHHhhhhcCCCCCCcccceEEEEEeecCccccCCCcEEEEc
Confidence                   223344544432     48999999999999999999996554333333 23333333332211 11222232


Q ss_pred             -CCCcEEEEecCCC-------ceEEEEEcCCCC--hHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccC
Q 010200          287 -PAGPIALLPIGDN-------FSNIVWTMNPKD--ASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGD  356 (515)
Q Consensus       287 -~~g~~~~~p~~~~-------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (515)
                       +++.+.++|+.++       ..+|++....+.  .......+.....+++...|. +|.....       + +..    
T Consensus       206 ~~~~~~~~~p~~~~~~~~g~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~-~~~----  272 (413)
T PRK07538        206 HLDGKLVVYPISEPVDADGRQLINWVAEVRVDDAGAPRREDWNRPGDLEDFLPHFA-DWRFDWL-------D-VPA----  272 (413)
T ss_pred             CCCCEEEEEECCCCcccCCceEEEEEEEEcCCccCCCcccccCCccCHHHHHHHhc-CCCCCcc-------c-HHH----
Confidence             3567888898753       334444333221  111111122233444444443 3432100       0 000    


Q ss_pred             ccccccccccCCcceEEeccceeeeccccc-cccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcC
Q 010200          357 ATLSAKECFEVPPRVVKLASERMVFPLSLK-HANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVG  435 (515)
Q Consensus       357 ~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~-~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~  435 (515)
                                    ++........||+... +.++|..|+|+|||||||+|+|+.|||+|+||+||..|+++|.+.   +
T Consensus       273 --------------~i~~~~~~~~~p~~~~~~~~~w~~grv~LvGDAAH~~~P~~GqG~~~Ai~Da~~La~~L~~~---~  335 (413)
T PRK07538        273 --------------LIRAAEAIYEYPMVDRDPLPRWTRGRVTLLGDAAHPMYPVGSNGASQAILDARALADALAAH---G  335 (413)
T ss_pred             --------------HHhcCcceeeccccccCCCCcccCCcEEEEeeccCcCCCCCcccHHHHHHHHHHHHHHHHhc---C
Confidence                          1111122223666554 468899999999999999999999999999999999999999873   2


Q ss_pred             CCcchHHHHHHHHHHhhHHHHHHHHHHHH
Q 010200          436 ADIGEASLLKKYEAERKPANIVMMAVLDG  464 (515)
Q Consensus       436 ~~~~~~~al~~Y~~~r~~~~~~~~~~s~~  464 (515)
                       +  ...+|+.|+++|++++..++..++.
T Consensus       336 -~--~~~aL~~Ye~~R~~~~~~~~~~s~~  361 (413)
T PRK07538        336 -D--PEAALAAYEAERRPATAQIVLANRL  361 (413)
T ss_pred             -C--HHHHHHHHHHHhhHHHHHHHHHhhh
Confidence             3  3789999999999999999998887

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=100.00  E-value=1.4e-38  Score=327.42  Aligned_cols=350  Identities=20%  Similarity=0.276  Sum_probs=234.7

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCC-cEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G-~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      ++|+||||||+||++|+.|+++    | ++|+||||.+.++          ..+.++.+.++++++|+.+|+.+.+.+..
T Consensus         1 ~~V~IiGgGiaGla~A~~L~~~----g~~~v~v~Er~~~~~----------~~G~gi~l~~~~~~~L~~lg~~~~~~~~~   66 (414)
T TIGR03219         1 LRVAIIGGGIAGVALALNLCKH----SHLNVQLFEAAPAFG----------EVGAGVSFGANAVRAIVGLGLGEAYTQVA   66 (414)
T ss_pred             CeEEEECCCHHHHHHHHHHHhc----CCCCEEEEecCCcCC----------CCccceeeCccHHHHHHHcCChhHHHHHh
Confidence            3799999999999999999997    6 6999999998763          34668999999999999999988877644


Q ss_pred             cc---ccceEEEE--eCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCccc
Q 010200          135 HA---YFDKMQVW--DYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISV  209 (515)
Q Consensus       135 ~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~  209 (515)
                      ..   ......+.  +..........   .........++|..|.+.|.+.+..   ..++++++|++++.         
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~R~~l~~~L~~~~~~---~~v~~~~~v~~i~~---------  131 (414)
T TIGR03219        67 DSTPAPWQDIWFEWRNGSDASYLGAT---IAPGVGQSSVHRADFLDALLKHLPE---GIASFGKRATQIEE---------  131 (414)
T ss_pred             cCCCccCcceeEEEEecCccceeeee---ccccCCcccCCHHHHHHHHHHhCCC---ceEEcCCEEEEEEe---------
Confidence            21   11222111  11111111110   0011112368899999999988753   56889999999976         


Q ss_pred             CCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCc-----cccccCCceEEEEEEEeecC-------
Q 010200          210 DSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFK-----TTGWSYSQNAIICTVEHNKE-------  277 (515)
Q Consensus       210 ~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~-----~~~~~~~~~~~~~~~~~~~~-------  277 (515)
                                 .+..+++.+++|+++.+|+||+|||.+|.||+.+...     ..+...+...+.+.++....       
T Consensus       132 -----------~~~~~~v~~~~g~~~~ad~vVgADG~~S~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~~~~~~~~~~~~  200 (414)
T TIGR03219       132 -----------QAEEVQVLFTDGTEYRCDLLIGADGIKSALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAA  200 (414)
T ss_pred             -----------cCCcEEEEEcCCCEEEeeEEEECCCccHHHHHHhcCccCCCCCCccccCcEEEEEEeeHHHHhhhhccc
Confidence                       3455889999999999999999999999999998321     11222344555555543210       


Q ss_pred             ---C---ceEEEEecCCCcEEEEecCCCce-EEEEEcCCCChH-----HhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCC
Q 010200          278 ---N---YCAWQRFLPAGPIALLPIGDNFS-NIVWTMNPKDAS-----DCKSMNEDDFVKILNHALDYGYGPHPKSISSG  345 (515)
Q Consensus       278 ---~---~~~~~~~~~~g~~~~~p~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (515)
                         .   ......+.+++++.++|+.++.. ++++........     .......+...+.+.+.|. +|.+..      
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~v------  273 (414)
T TIGR03219       201 GLDEHLVDVPQMYLGLDGHILTFPVRQGRLINVVAFISDRSQPKPTWPSDTPWVREATQREMLDAFA-GWGDAA------  273 (414)
T ss_pred             cccccccccceEEEcCCCeEEEEECCCCcEEEEEEEEcCcccccCCCCCCCcccCccCHHHHHHHhc-CCCHHH------
Confidence               0   11223456778888999988764 333333221100     0001112223444555554 554331      


Q ss_pred             cccchhccccCccccccccccCCcceEEeccceeeeccccc-cccccccCcEEEEcccccccCCccccchhhcHHHHHHH
Q 010200          346 SVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLK-HANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTL  424 (515)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~-~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~L  424 (515)
                       .+.++.                      ......|++... ..++|..|+|+|||||||+|.|+.|||+|+||+||..|
T Consensus       274 -~~~~~~----------------------~~~~~~~~~~~~~~~~~w~~grv~LiGDAAH~m~P~~GqGa~~AieDA~~L  330 (414)
T TIGR03219       274 -RALLEC----------------------IPAPTLWALHDLAELPGYVHGRVALIGDAAHAMLPHQGAGAGQGLEDAYFL  330 (414)
T ss_pred             -HHHHHh----------------------CCCCCceeeeecccccceeeCcEEEEEcccCCCCCCcCcchHhHHHHHHHH
Confidence             111111                      011112333332 36789999999999999999999999999999999999


Q ss_pred             HHHHHHhHhcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCChHH
Q 010200          425 SRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLN  477 (515)
Q Consensus       425 a~~l~~~~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~  477 (515)
                      +++|........++  ..+|+.|++.|++++..++..++.+..+++..++...
T Consensus       331 a~~L~~~~~~~~~~--~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~~~~  381 (414)
T TIGR03219       331 ARLLGDTELEAGDL--PALLEAYDDVRRPRACRVQRTSREAGELYELRDPAVG  381 (414)
T ss_pred             HHHHHhhccCcchH--HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCChhcc
Confidence            99998754333333  7899999999999999999999999999987664433

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK07236 hypothetical protein; Provisional

Probab=100.00  E-value=7e-38  Score=319.31  Aligned_cols=338  Identities=20%  Similarity=0.194  Sum_probs=227.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      ..++|+||||||+||++|+.|++.    |++|+||||.+.+.         ...+.++.++++++++|+++|+.+.. +.
T Consensus         5 ~~~~ViIVGaG~aGl~~A~~L~~~----G~~v~v~E~~~~~~---------~~~g~gi~l~~~~~~~l~~lg~~~~~-~~   70 (386)
T PRK07236          5 SGPRAVVIGGSLGGLFAALLLRRA----GWDVDVFERSPTEL---------DGRGAGIVLQPELLRALAEAGVALPA-DI   70 (386)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhC----CCCEEEEecCCCCc---------CCCCceeEeCHHHHHHHHHcCCCccc-cc
Confidence            458999999999999999999996    99999999987541         12345888999999999999997765 33


Q ss_pred             hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (515)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~  213 (515)
                      .. +.....+++..+......+.     .  ...+.+..+.+.|.+.+   +.++|+++++|++++.             
T Consensus        71 ~~-~~~~~~~~~~~g~~~~~~~~-----~--~~~~~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~-------------  126 (386)
T PRK07236         71 GV-PSRERIYLDRDGRVVQRRPM-----P--QTQTSWNVLYRALRAAF---PAERYHLGETLVGFEQ-------------  126 (386)
T ss_pred             cc-CccceEEEeCCCCEeeccCC-----C--ccccCHHHHHHHHHHhC---CCcEEEcCCEEEEEEe-------------
Confidence            33 44455555544422111111     1  12356778888888765   3478999999999976             


Q ss_pred             CcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccC-CceEEEEEEEee---cCC----ceEE-EE
Q 010200          214 SATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSY-SQNAIICTVEHN---KEN----YCAW-QR  284 (515)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~-~~~~~~~~~~~~---~~~----~~~~-~~  284 (515)
                             .+..+++++++|+++.+|+||+|||.+|.+|+.+.... ...| +...+.+.+...   ...    ...+ ..
T Consensus       127 -------~~~~v~v~~~~g~~~~ad~vIgADG~~S~vR~~l~~~~-~~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~~~~  198 (386)
T PRK07236        127 -------DGDRVTARFADGRRETADLLVGADGGRSTVRAQLLPDV-RPTYAGYVAWRGLVDEAALPPEARAALRDRFTFQ  198 (386)
T ss_pred             -------cCCeEEEEECCCCEEEeCEEEECCCCCchHHHHhCCCC-CCCcCCeEEEEEecchHHcCchhhhhcccceEEE
Confidence                   34568899999999999999999999999999984332 2334 333344443321   111    1122 23


Q ss_pred             ecCCCcEEEEecCC---------CceEEEEEcCCCChHHhh-----------------cCCHHHHHHHHHHhhcCCCCCC
Q 010200          285 FLPAGPIALLPIGD---------NFSNIVWTMNPKDASDCK-----------------SMNEDDFVKILNHALDYGYGPH  338 (515)
Q Consensus       285 ~~~~g~~~~~p~~~---------~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~  338 (515)
                      ..+++.++.+|+++         ...+++|....+......                 ....+.+.+.+.+.+...|.+.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  278 (386)
T PRK07236        199 LGPGSHILGYPVPGEDGSTEPGKRRYNWVWYRNAPAGEELDELLTDRDGTRRPFSVPPGALRDDVLAELRDDAAELLAPV  278 (386)
T ss_pred             EcCCceEEEEECCCCCCCcCCCCcEEEEEEEecCCCccchhhhcccCCCccccCCCCccccCHHHHHHHHHHHHHhcCHH
Confidence            35667788888764         235677765443211000                 0012334445544433123321


Q ss_pred             CCCCCCCcccchhccccCccccccccccCCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcH
Q 010200          339 PKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGF  418 (515)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al  418 (515)
                             ..+.+..                      ......+++.....++|..+||+|+|||||+|+|+.|||+|+||
T Consensus       279 -------~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai  329 (386)
T PRK07236        279 -------FAELVEA----------------------TAQPFVQAIFDLEVPRMAFGRVALLGDAAFVARPHTAAGVAKAA  329 (386)
T ss_pred             -------HHHHHhh----------------------CcCchhhhhhcccCcccccCcEEEEecccccCCCcchhhHHHHH
Confidence                   0011110                      11111234444445788899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHhcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC
Q 010200          419 GDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSV  471 (515)
Q Consensus       419 ~da~~La~~l~~~~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~  471 (515)
                      +||..|+++|....   .+  ...+|+.|++.|++++..++..++.+..+++.
T Consensus       330 eDA~~La~~L~~~~---~~--~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~  377 (386)
T PRK07236        330 ADAVALAEALAAAA---GD--IDAALAAWEAERLAVGAAIVARGRRLGARLQA  377 (386)
T ss_pred             HHHHHHHHHHHhcc---cc--hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence            99999999998641   12  37899999999999999999999999887754

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=100.00  E-value=6.6e-36  Score=314.10  Aligned_cols=370  Identities=17%  Similarity=0.186  Sum_probs=237.3

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCC--chh
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGA--WQY  129 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl--~~~  129 (515)
                      ..+..+|+||||||+||++|+.|++.    |++|+||||++... .     ......+++.++++++++|+.+|+  .++
T Consensus        78 ~~~~~~VlIVGgGIaGLalAlaL~r~----Gi~V~V~Er~~~~~-r-----~~G~~~~~I~L~pngl~aLe~LGl~~~e~  147 (668)
T PLN02927         78 KKKKSRVLVAGGGIGGLVFALAAKKK----GFDVLVFEKDLSAI-R-----GEGKYRGPIQIQSNALAALEAIDIDVAEQ  147 (668)
T ss_pred             ccCCCCEEEECCCHHHHHHHHHHHhc----CCeEEEEecccccc-c-----cccccCcccccCHHHHHHHHHcCcchHHH
Confidence            34668999999999999999999996    99999999986320 0     001112468999999999999985  455


Q ss_pred             hhhhhccccceEE-EEeC-CCccceeeecc---cCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCC
Q 010200          130 VQQHRHAYFDKMQ-VWDY-TGLGYTKYNAR---DVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSS  204 (515)
Q Consensus       130 ~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~---~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~  204 (515)
                      +.+.+......+. +.+. .+.....++..   .......++.++|..|.+.|.+.+..   ..++++++|++++.    
T Consensus       148 l~~~g~~~~~~i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~---~~i~~g~~V~~I~~----  220 (668)
T PLN02927        148 VMEAGCITGDRINGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGE---DVIRNESNVVDFED----  220 (668)
T ss_pred             HHhhcCcccceeeeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCCC---CEEEcCCEEEEEEE----
Confidence            5554432212221 2222 22111222211   00112345789999999999887632   34789999999976    


Q ss_pred             CCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC--ceEE
Q 010200          205 SSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN--YCAW  282 (515)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  282 (515)
                                      .++.+++.+++|+++.+|+||+|||++|.+|+.+.........+..++.+.++.....  ...+
T Consensus       221 ----------------~~d~VtV~~~dG~ti~aDlVVGADG~~S~vR~~l~g~~~~~~sG~~~~rgi~~~~p~~~~~~~~  284 (668)
T PLN02927        221 ----------------SGDKVTVVLENGQRYEGDLLVGADGIWSKVRNNLFGRSEATYSGYTCYTGIADFIPADIESVGY  284 (668)
T ss_pred             ----------------eCCEEEEEECCCCEEEcCEEEECCCCCcHHHHHhcCCCCCcccceEEEEEEcCCCcccccccce
Confidence                            4467889999999999999999999999999998433333333444444555442211  1112


Q ss_pred             EEe-cCCCcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccc
Q 010200          283 QRF-LPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSA  361 (515)
Q Consensus       283 ~~~-~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (515)
                      ..+ .+..++..+|..++..++++....+..   .....+...+++.+.|. +|.+..       .+.+...        
T Consensus       285 ~~~~G~~~~~v~~~v~~g~~~~~~f~~~p~~---~~~~~~~~~e~L~~~f~-~w~~~v-------~elI~~t--------  345 (668)
T PLN02927        285 RVFLGHKQYFVSSDVGGGKMQWYAFHEEPAG---GADAPNGMKKRLFEIFD-GWCDNV-------LDLLHAT--------  345 (668)
T ss_pred             EEEEcCCeEEEEEcCCCCeEEEEEEEECCcc---ccccchhHHHHHHHHhc-cCCHHH-------HHHHHhC--------
Confidence            233 344555566666665544433222111   01123456666777666 665431       1111110        


Q ss_pred             cccccCCcceEEeccceeeeccccc-cccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhc----CC
Q 010200          362 KECFEVPPRVVKLASERMVFPLSLK-HANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAV----GA  436 (515)
Q Consensus       362 ~~~~~i~~~~~~~~~~~~~~p~~~~-~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~----~~  436 (515)
                            +.      .....++++.. +..+|..|+|+|+|||||+|+|+.|||+|+||+||..|++.|..+++.    +.
T Consensus       346 ------~~------~~i~~~~iyd~~p~~~W~~grVvLiGDAAH~~~P~~GqG~n~AieDa~~La~~L~~~~~~~~~~~~  413 (668)
T PLN02927        346 ------EE------DAILRRDIYDRSPGFTWGKGRVTLLGDSIHAMQPNMGQGGCMAIEDSFQLALELDEAWKQSVETNT  413 (668)
T ss_pred             ------cc------ccceeeeEEeccCCCccccCcEEEEcCccCCCCCccccchHHHHHHHHHHHHHHHHhhccccccCC
Confidence                  00      00112333333 245799999999999999999999999999999999999999887532    12


Q ss_pred             CcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-------CCCChHHHHHHHHHH
Q 010200          437 DIGEASLLKKYEAERKPANIVMMAVLDGFQKAYS-------VDFGPLNILRAAAFH  485 (515)
Q Consensus       437 ~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~-------~~~~~~~~~r~~~~~  485 (515)
                      +.....+|+.|+++|++++..++..++.....+.       ....++.++|.+.+.
T Consensus       414 ~~~~~~aL~~Ye~~R~~rv~~i~~~ar~a~~~~~~~~~y~~~~~~p~~~~~~~~~~  469 (668)
T PLN02927        414 PVDVVSSLKRYEESRRLRVAIIHAMARMAAIMASTYKAYLGVGLGPLSFLTKFRVP  469 (668)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhcCCC
Confidence            2334789999999999999999998665444432       234566777766543

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=100.00  E-value=1.6e-34  Score=277.76  Aligned_cols=329  Identities=21%  Similarity=0.256  Sum_probs=192.3

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      ..+|+|||||++||++|+.|+|.    |++|+|||+...++          ..++++++.-+++++|+.+++.+.+.+..
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~----G~~v~VlE~~e~~R----------~~g~si~L~~ng~~aLkai~~~e~i~~~g   67 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRK----GIDVVVLESREDPR----------GEGTSINLALNGWRALKAIGLKEQIREQG   67 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHc----CCeEEEEeeccccc----------cCCcceeehhhHHHHHHHcccHHHHHHhc
Confidence            35799999999999999999996    99999999988884          33668899999999999999999999988


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCC----eeEEEEeCCCCCCcccC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPS----RLTSMALLPSSSSISVD  210 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~----~v~~i~~~~~~~~~~~~  210 (515)
                      .+.-..+......+.....++....  ..+-..+.|..+...++..++..+.++++.+.    ....++.          
T Consensus        68 ip~~~~v~~~~~sg~~~~~~~~~~~--~~~i~r~~~r~ll~~lL~~a~~~~~ikf~~~~~~~~~~~~~~~----------  135 (420)
T KOG2614|consen   68 IPLGGRVLIHGDSGKEVSRILYGEP--DEYILRINRRNLLQELLAEALPTGTIKFHSNLSCTSKDVEIET----------  135 (420)
T ss_pred             CcccceeeeecCCCCeeEecccCCc--hHHHHHHHHHHHHHHHHHhhcCCCeeecccccccccccceeee----------
Confidence            7333333333344444444432211  11112344455555555555545544444332    2222221          


Q ss_pred             CCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEE--EEEeecCC-ceEEEEecC
Q 010200          211 STPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIIC--TVEHNKEN-YCAWQRFLP  287 (515)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~  287 (515)
                                .+....+++.+|.++++|++|+|||++|.||++|+...+.. ..+.++.+  .++...+. ...+  ...
T Consensus       136 ----------~~~~~~v~l~~g~~~~~dlligCDGa~S~Vr~~l~~~~p~~-~~~~ayrg~~~~~~~~~~~~~vf--~~~  202 (420)
T KOG2614|consen  136 ----------LGKKLVVHLSDGTTVKGDLLIGCDGAYSKVRKWLGFKEPRY-DGSQAYRGLGFIPNGIPFGKKVF--AIY  202 (420)
T ss_pred             ----------cccccceecCCCcEEEeeEEEEcCchHHHHHHHhcccCCcc-eeEEEEeeeeeccCCCCccccee--ccc
Confidence                      34557788899999999999999999999999997765222 22233332  33333222 1111  123


Q ss_pred             CCcEEEEecCCCceEEEEEc----------CCCChHHhhcCCH---HHHHHHHHHhhcCCCCCCCCCCCCCcccchhccc
Q 010200          288 AGPIALLPIGDNFSNIVWTM----------NPKDASDCKSMNE---DDFVKILNHALDYGYGPHPKSISSGSVDMFSWFR  354 (515)
Q Consensus       288 ~g~~~~~p~~~~~~~~~~~~----------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (515)
                      ++.+..-|.+.....++|..          ..++.+.......   +.|.+.+.+.+.--+.+.          +..-  
T Consensus       203 ~~~~~~~~~~~~~~~~y~~~~k~~t~t~~~~~~e~~~l~~~~~~v~~~~~en~~d~i~~~~~e~----------i~~t--  270 (420)
T KOG2614|consen  203 GNGLHSWPRPGFHLIAYWFLDKSLTSTDFAPFDEPEKLKKTSLEVVDFFPENFPDIIELTGEES----------IVRT--  270 (420)
T ss_pred             CCeEEEcccCCceEEEEEeecCCcccccccCcCCHHHHhhhHHHHHHHhHHhHHHHHHhcChHH----------hhhc--
Confidence            33444444444444444443          2223222222111   111222222111000000          0000  


Q ss_pred             cCccccccccccCCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhc
Q 010200          355 GDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAV  434 (515)
Q Consensus       355 ~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~  434 (515)
                              .           ...+-.||+-..   ....++|+|+|||||+|.|+.|||+|+|+||+.+|+++|.++.+.
T Consensus       271 --------~-----------l~~r~p~~~i~~---~~s~~~vvL~GDAaHaM~Pf~GQG~n~a~ED~~VLa~~L~~~~~d  328 (420)
T KOG2614|consen  271 --------P-----------LADRPPWPLISV---KCSPGNVVLLGDAAHAMTPFLGQGGNCAFEDCVVLAECLDEAIND  328 (420)
T ss_pred             --------h-----------hhhcCCcCeeee---ccCCCeEEEecccccccCCcccccccchHHHHHHHHHHHHHhccc
Confidence                    0           000001222111   122358999999999999999999999999999999999998652


Q ss_pred             ----CCCcc--------hHHHHHHHHHHhhHHHH
Q 010200          435 ----GADIG--------EASLLKKYEAERKPANI  456 (515)
Q Consensus       435 ----~~~~~--------~~~al~~Y~~~r~~~~~  456 (515)
                          ++-..        .+.++..|...|..+.-
T Consensus       329 ~s~~~~~~s~~~e~~~~ie~a~~~Y~~~r~~r~~  362 (420)
T KOG2614|consen  329 VSLAGEEYSRENESHAIIELAMYSYKEERWRRLL  362 (420)
T ss_pred             hhccccceecccchhHHHHHHHHHHHHHHHHHHh
Confidence                11111        25678888888844433

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=100.00  E-value=1.7e-32  Score=282.00  Aligned_cols=338  Identities=18%  Similarity=0.181  Sum_probs=219.8

Q ss_pred             CCCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhh
Q 010200           51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYV  130 (515)
Q Consensus        51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~  130 (515)
                      .....+||+||||||||+++|+.|++.    |++|+|+||.... .+.|          +..++   ...++++++.+.+
T Consensus        35 ~~~~~~DViIVGaGPAG~~aA~~LA~~----G~~VlllEr~~~~-~k~c----------gg~i~---~~~l~~lgl~~~~   96 (450)
T PLN00093         35 LSGRKLRVAVIGGGPAGACAAETLAKG----GIETFLIERKLDN-AKPC----------GGAIP---LCMVGEFDLPLDI   96 (450)
T ss_pred             cCCCCCeEEEECCCHHHHHHHHHHHhC----CCcEEEEecCCCC-CCCc----------ccccc---HhHHhhhcCcHHH
Confidence            445679999999999999999999996    9999999998632 2333          44454   3567788888776


Q ss_pred             hhhhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccC
Q 010200          131 QQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVD  210 (515)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~  210 (515)
                      ...   .+..+.++...+ ..+.+... .....+...++|..|++.|.+++.+.| ++++.+ +++++..         +
T Consensus        97 ~~~---~i~~~~~~~p~~-~~v~~~~~-~~~~~~~~~v~R~~~d~~L~~~A~~~G-a~~~~~-~v~~i~~---------~  160 (450)
T PLN00093         97 IDR---KVTKMKMISPSN-VAVDIGKT-LKPHEYIGMVRREVLDSFLRERAQSNG-ATLING-LFTRIDV---------P  160 (450)
T ss_pred             HHH---HhhhheEecCCc-eEEEeccc-CCCCCeEEEecHHHHHHHHHHHHHHCC-CEEEec-eEEEEEe---------c
Confidence            553   334555554322 22333211 111222346999999999999999988 899876 5777754         1


Q ss_pred             CCCCcccccccCCeeEEEcCC-------C--cEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeec-----
Q 010200          211 STPSATTLFTKGHLAKLDLSD-------G--TSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK-----  276 (515)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~~~-------g--~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~-----  276 (515)
                      .+        .+..+.+++.+       |  .+++||+||+|||.+|.+|+.++...  ..+ ..++...+....     
T Consensus       161 ~~--------~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S~vrr~lg~~~--~~~-~~~~~~~~~~~~~~~~~  229 (450)
T PLN00093        161 KD--------PNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGANSRVAKDIDAGD--YDY-AIAFQERIKIPDDKMEY  229 (450)
T ss_pred             cC--------CCCcEEEEEEeccccccCCCccEEEeCEEEEcCCcchHHHHHhCCCC--cce-eEEEEEEEeCChhhccc
Confidence            00        11334454422       3  47999999999999999999997642  111 112222222221     


Q ss_pred             CCceEEEE----ecCCCcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhc
Q 010200          277 ENYCAWQR----FLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSW  352 (515)
Q Consensus       277 ~~~~~~~~----~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (515)
                      .......+    +.|+++.|++|.++ ..++.......      ..+...+.+.+.+.+.    ..              
T Consensus       230 ~~~~~~~~~g~~~~p~~Y~WifP~g~-~~~VG~g~~~~------~~~~~~~~~~l~~~~~----~~--------------  284 (450)
T PLN00093        230 YEDLAEMYVGDDVSPDFYGWVFPKCD-HVAVGTGTVVN------KPAIKKYQRATRNRAK----DK--------------  284 (450)
T ss_pred             cCCeEEEEeCCCCCCCceEEEEECCC-cEEEEEEEccC------CCChHHHHHHHHHHhh----hh--------------
Confidence            11112222    24778999999985 45555532211      1233444444443221    00              


Q ss_pred             cccCccccccccccCCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhH
Q 010200          353 FRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGI  432 (515)
Q Consensus       353 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~  432 (515)
                      +.+             .++.+    ....|+.....++|..++++|||||||.++|++|+|++.||.++..+++.+.+.+
T Consensus       285 l~~-------------~~~~~----~~~~~ip~~~~~~~~~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~  347 (450)
T PLN00093        285 IAG-------------GKIIR----VEAHPIPEHPRPRRVRGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGS  347 (450)
T ss_pred             cCC-------------CeEEE----EEEEEcccccccceeCCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHH
Confidence            000             00111    1123333344567888999999999999999999999999999999999999988


Q ss_pred             hcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCh
Q 010200          433 AVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGP  475 (515)
Q Consensus       433 ~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~  475 (515)
                      ..+.+......|+.|++.++......+..+..+.++|..++..
T Consensus       348 ~~g~~~~s~~~L~~Y~~~~~~~~g~~~~~~~~l~~~~~~~~~~  390 (450)
T PLN00093        348 ENGTRMVDEADLREYLRKWDKKYWPTYKVLDILQKVFYRSNPA  390 (450)
T ss_pred             hcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH
Confidence            7653333467899999999999999999999999988765433

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=100.00  E-value=2.3e-31  Score=271.25  Aligned_cols=322  Identities=20%  Similarity=0.220  Sum_probs=213.9

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      |||+||||||||+++|+.|++.    |++|+|+|+.. +..+.|          +..+++   +.++.+++.+.+...  
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~----G~~V~l~E~~~-~~~~~c----------g~~i~~---~~l~~l~i~~~~~~~--   60 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARA----GIETILLERAL-SNIKPC----------GGAIPP---CLIEEFDIPDSLIDR--   60 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhC----CCcEEEEECCC-CCcCcC----------cCCcCH---hhhhhcCCchHHHhh--
Confidence            7999999999999999999996    99999999982 211223          445554   457778887776653  


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                       .+..+.++...+.. ......  ....+...++|..|++.|.+++.+.| ++++.+ +|+++..               
T Consensus        61 -~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~r~~fd~~L~~~a~~~G-~~v~~~-~v~~v~~---------------  119 (388)
T TIGR02023        61 -RVTQMRMISPSRVP-IKVTIP--SEDGYVGMVRREVFDSYLRERAQKAG-AELIHG-LFLKLER---------------  119 (388)
T ss_pred             -hcceeEEEcCCCce-eeeccC--CCCCceEeeeHHHHHHHHHHHHHhCC-CEEEee-EEEEEEE---------------
Confidence             44666666544321 111111  11112235999999999999999887 899765 6888865               


Q ss_pred             ccccccCCeeEEEcCC------C--cEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeec-----CCceEE
Q 010200          216 TTLFTKGHLAKLDLSD------G--TSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK-----ENYCAW  282 (515)
Q Consensus       216 ~~~~~~~~~~~v~~~~------g--~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  282 (515)
                           .++.+.+++.+      |  .++.+|+||+|||.+|.+|+.++..... .+ ..++...+....     +.+...
T Consensus       120 -----~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v~r~lg~~~~~-~~-~~a~~~~~~~~~~~~~~~~~~~~  192 (388)
T TIGR02023       120 -----DRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSPVAKELGLPKNL-PR-VIAYQERIKLPDDKMAYYEELAD  192 (388)
T ss_pred             -----cCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcHHHHHcCCCCCC-cE-EEEEEEEecCCchhcccCCCeEE
Confidence                 23445555542      2  3799999999999999999999765321 11 112222222111     111111


Q ss_pred             EE----ecCCCcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCcc
Q 010200          283 QR----FLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDAT  358 (515)
Q Consensus       283 ~~----~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (515)
                      .+    +.|+++.|++|.++ ..++.......      ..+.+.+.+.+.+.+.  ...         .+          
T Consensus       193 ~~~~~~~~p~~y~wv~P~~~-~~~vg~~~~~~------~~~~~~~~~~l~~~~~--~~~---------~~----------  244 (388)
T TIGR02023       193 VYYGGEVSPDFYGWVFPKGD-HIAVGTGTGTH------GFDAKQLQANLRRRAG--LDG---------GQ----------  244 (388)
T ss_pred             EEECCCcCCCceEEEeeCCC-eeEEeEEECCC------CCCHHHHHHHHHHhhC--CCC---------ce----------
Confidence            11    24678999999975 45554432111      1234555555555321  000         00          


Q ss_pred             ccccccccCCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCc
Q 010200          359 LSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADI  438 (515)
Q Consensus       359 ~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~  438 (515)
                                  ...  ......|+  ...++|..+++++||||||.++|++|+|++.||++|..+++.|.+.+..+.  
T Consensus       245 ------------~~~--~~~~~ip~--~~~~~~~~~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~~~~--  306 (388)
T TIGR02023       245 ------------TIR--REAAPIPM--KPRPRWDFGRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQNGD--  306 (388)
T ss_pred             ------------Eee--eeeEeccc--cccccccCCCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHhcCC--
Confidence                        000  00111233  345678889999999999999999999999999999999999999887542  


Q ss_pred             chHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCC
Q 010200          439 GEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDF  473 (515)
Q Consensus       439 ~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~  473 (515)
                        ...|+.|++.++......+...+.+..++..++
T Consensus       307 --~~~L~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (388)
T TIGR02023       307 --ATDLRHYERKFMKLYGTTFRVLRVLQMVYYRSD  339 (388)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCH
Confidence              578999999999999888888888888875543

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>TIGR02028 ChlP geranylgeranyl reductase

Probab=100.00  E-value=3.7e-30  Score=262.36  Aligned_cols=331  Identities=21%  Similarity=0.204  Sum_probs=213.7

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      +||+||||||||+++|+.|++.    |++|+|+||.... .+.|          +..++   ...|+++|+.+.+...  
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~----G~~V~llE~~~~~-~~~c----------g~~i~---~~~l~~~g~~~~~~~~--   60 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASA----GIQTFLLERKPDN-AKPC----------GGAIP---LCMVDEFALPRDIIDR--   60 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhC----CCcEEEEecCCCC-CCCc----------ccccc---HhhHhhccCchhHHHh--
Confidence            5899999999999999999996    9999999998643 2333          33444   3567888887766553  


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                       .+..+.++...+ ..+.+.... ....+.+.++|..|++.|.+++.+.| ++++.+ ++++++.         .++   
T Consensus        61 -~i~~~~~~~p~~-~~~~~~~~~-~~~~~~~~v~R~~~d~~L~~~a~~~G-~~v~~~-~~~~i~~---------~~~---  123 (398)
T TIGR02028        61 -RVTKMKMISPSN-IAVDIGRTL-KEHEYIGMLRREVLDSFLRRRAADAG-ATLING-LVTKLSL---------PAD---  123 (398)
T ss_pred             -hhceeEEecCCc-eEEEeccCC-CCCCceeeeeHHHHHHHHHHHHHHCC-cEEEcc-eEEEEEe---------ccC---
Confidence             334555554332 222222111 11222246999999999999999988 999888 4777753         000   


Q ss_pred             ccccccCCeeEEEc--CC-----C--cEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecC-----CceE
Q 010200          216 TTLFTKGHLAKLDL--SD-----G--TSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKE-----NYCA  281 (515)
Q Consensus       216 ~~~~~~~~~~~v~~--~~-----g--~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~  281 (515)
                           .+..+.+++  .+     |  .+++||+||+|||.+|.+|+.++....  .+ ...+...+..+.+     .+..
T Consensus       124 -----~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S~v~~~~g~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~  195 (398)
T TIGR02028       124 -----ADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANSRVAKEIDAGDY--SY-AIAFQERIRLPDEKMAYYDDLA  195 (398)
T ss_pred             -----CCceEEEEEeeccccccCCCccEEEeCEEEECCCcchHHHHHhCCCCc--ce-EEEEEEEeeCChhhcccCCCeE
Confidence                 112233432  22     3  379999999999999999999976421  11 1122222222211     1111


Q ss_pred             EEE----ecCCCcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCc
Q 010200          282 WQR----FLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDA  357 (515)
Q Consensus       282 ~~~----~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (515)
                      ..+    +.|+++.|++|.++ ..++.......      ....+.+.+.+...+.    ..              ..+  
T Consensus       196 ~~~~g~~~~p~gY~WifP~~~-~~~VG~g~~~~------~~~~~~~~~~l~~~~~----~~--------------~~~--  248 (398)
T TIGR02028       196 EMYVGDDVSPDFYGWVFPKCD-HVAVGTGTVAA------KPEIKRLQSGIRARAA----GK--------------VAG--  248 (398)
T ss_pred             EEEeCCCCCCCceEEEEECCC-eEEEEEEeCCC------CccHHHHHHhhhhhhh----hc--------------cCC--
Confidence            112    34778999999985 44554432211      1123445544433111    00              000  


Q ss_pred             cccccccccCCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCC
Q 010200          358 TLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGAD  437 (515)
Q Consensus       358 ~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~  437 (515)
                                 .++...    ...++.....+++..++++|||||||.++|++|+|++.||.++..+|+.+.+++..+.+
T Consensus       249 -----------~~~~~~----~~~~ip~~~~~~~~~~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~~~~~  313 (398)
T TIGR02028       249 -----------GRIIRV----EAHPIPEHPRPRRVVGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRLGGA  313 (398)
T ss_pred             -----------CcEEEE----EEEeccccccccEECCCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHhcCCC
Confidence                       001111    11222223446777899999999999999999999999999999999999998876643


Q ss_pred             cchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCC
Q 010200          438 IGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDF  473 (515)
Q Consensus       438 ~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~  473 (515)
                      ..+...|+.|++.++....+.+..+..+.++|..++
T Consensus       314 ~~~~~~l~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (398)
T TIGR02028       314 VTEEGDLAGYLRRWDKEYRPTYRVLDLLQRVFYRSN  349 (398)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            334678999999999999999999999999887644

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=99.98  E-value=3.2e-30  Score=253.39  Aligned_cols=287  Identities=20%  Similarity=0.293  Sum_probs=188.4

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      |||+||||||+||++|+.|++.    |++|+|+||...++..          .++..+.+++++.+...+.  ...    
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~----g~~v~vie~~~~~~~~----------~~~~~~~~~~~~~l~~~~~--~~~----   60 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADK----GLRVLLLEKKSFPRYK----------PCGGALSPRVLEELDLPLE--LIV----   60 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHC----CCeEEEEeccCCCCcc----------cccCccCHhHHHHhcCCch--hhh----
Confidence            6999999999999999999996    9999999999876432          3366778877777655442  111    


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                      .......++...+.. .....    .....+.++|..+.+.|.+.+.+.| ++++++++|++++.               
T Consensus        61 ~~~~~~~~~~~~~~~-~~~~~----~~~~~~~i~r~~l~~~l~~~~~~~g-v~~~~~~~v~~~~~---------------  119 (295)
T TIGR02032        61 NLVRGARFFSPNGDS-VEIPI----ETELAYVIDRDAFDEQLAERAQEAG-AELRLGTTVLDVEI---------------  119 (295)
T ss_pred             hheeeEEEEcCCCcE-EEecc----CCCcEEEEEHHHHHHHHHHHHHHcC-CEEEeCcEEeeEEE---------------
Confidence            122333444333321 12111    1344578999999999999999887 99999999999976               


Q ss_pred             ccccccCCeeEEEcCCC-cEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecC--CceEEEEe-----cC
Q 010200          216 TTLFTKGHLAKLDLSDG-TSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKE--NYCAWQRF-----LP  287 (515)
Q Consensus       216 ~~~~~~~~~~~v~~~~g-~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----~~  287 (515)
                           .++.+++.+.++ .++++|+||+|||.+|.+|+.++.......+. ..+...++.+..  .......+     .+
T Consensus       120 -----~~~~~~~~~~~~~~~~~a~~vv~a~G~~s~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (295)
T TIGR02032       120 -----HDDRVVVIVRGGEGTVTAKIVIGADGSRSIVAKKLGLRKEPRELG-VAARAEVEMPDEEVDEDFVEVYIDRGISP  193 (295)
T ss_pred             -----eCCEEEEEEcCccEEEEeCEEEECCCcchHHHHhcCCCCCCccee-eEEEEEEecCCcccCcceEEEEcCCCcCC
Confidence                 334455555543 57999999999999999999987654322222 233344444321  12222222     24


Q ss_pred             CCcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccC
Q 010200          288 AGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEV  367 (515)
Q Consensus       288 ~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  367 (515)
                      ++++|++|+.++..++.+......    ...+.++..+.+...++ .+..         .+                   
T Consensus       194 ~~~~~~~P~~~~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~~-~l~~---------~~-------------------  240 (295)
T TIGR02032       194 GGYGWVFPKGDGTANVGVGSRSAE----EGEDLKKYLKDFLARRP-ELKD---------AE-------------------  240 (295)
T ss_pred             CceEEEEeCCCCeEEEeeeeccCC----CCCCHHHHHHHHHHhCc-cccc---------Cc-------------------
Confidence            588999999988877776655432    12344444444444222 0000         00                   


Q ss_pred             CcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHH
Q 010200          368 PPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRII  428 (515)
Q Consensus       368 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l  428 (515)
                         +....  ....|.. ....+|..+||+++|||||+++|++|||+|+||+||..+|++|
T Consensus       241 ---~~~~~--~~~~~~~-~~~~~~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~  295 (295)
T TIGR02032       241 ---TVEVI--GAPIPIG-RPDDKTVRGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI  295 (295)
T ss_pred             ---EEeee--ceeeccC-CCCCccccCCEEEEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence               01100  0012221 1345778899999999999999999999999999999999874

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.97  E-value=4.5e-29  Score=254.60  Aligned_cols=334  Identities=18%  Similarity=0.178  Sum_probs=217.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      ..|||+||||||||++||+.|++.    |++|+|+||...++.+.|         .+..+.+..++.+......+ +.. 
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~----G~~VlvlEk~~~~G~k~~---------~~~~~~~~~l~~l~~~~~~~-i~~-   66 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKA----GLDVLVLEKGSEPGAKPC---------CGGGLSPRALEELIPDFDEE-IER-   66 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHc----CCeEEEEecCCCCCCCcc---------ccceechhhHHHhCCCcchh-hhe-
Confidence            469999999999999999999997    899999999999976655         13566666655433222111 111 


Q ss_pred             hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (515)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~  213 (515)
                         .+....++....  ...+....    ..++.++|..++++|.+++++.| ++++.++++.++..             
T Consensus        67 ---~v~~~~~~~~~~--~~~~~~~~----~~~y~v~R~~fd~~La~~A~~aG-ae~~~~~~~~~~~~-------------  123 (396)
T COG0644          67 ---KVTGARIYFPGE--KVAIEVPV----GEGYIVDRAKFDKWLAERAEEAG-AELYPGTRVTGVIR-------------  123 (396)
T ss_pred             ---eeeeeEEEecCC--ceEEecCC----CceEEEEhHHhhHHHHHHHHHcC-CEEEeceEEEEEEE-------------
Confidence               334444444422  22222111    45799999999999999999999 99999999999987             


Q ss_pred             CcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCCceEEEE-----ecCC
Q 010200          214 SATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQR-----FLPA  288 (515)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~  288 (515)
                            +++..+.....++.++++|+||+|||.+|.+++.++........-..++.-.+..+.+.......     ..+.
T Consensus       124 ------~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~l~~~lg~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~  197 (396)
T COG0644         124 ------EDDGVVVGVRAGDDEVRAKVVIDADGVNSALARKLGLKDRKPEDYAIGVKEVIEVPDDGDVEEFLYGPLDVGPG  197 (396)
T ss_pred             ------eCCcEEEEEEcCCEEEEcCEEEECCCcchHHHHHhCCCCCChhheeEEeEEEEecCCCCceEEEEecCCccCCC
Confidence                  12233444444446899999999999999999999877111111122222233333222222222     3477


Q ss_pred             CcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCC
Q 010200          289 GPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVP  368 (515)
Q Consensus       289 g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  368 (515)
                      |+.|++|..++..++........ .. ..... +..+.+.....                ......+             
T Consensus       198 Gy~wifP~~~~~~~VG~g~~~~~-~~-~~~~~-~~l~~f~~~~~----------------~~~~~~~-------------  245 (396)
T COG0644         198 GYGWIFPLGDGHANVGIGVLLDD-PS-LSPFL-ELLERFKEHPA----------------IRKLLLG-------------  245 (396)
T ss_pred             ceEEEEECCCceEEEEEEEecCC-cC-CCchH-HHHHHHHhCcc----------------cchhccC-------------
Confidence            99999999999888888765554 11 11111 23333322110                0000000             


Q ss_pred             cceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHH
Q 010200          369 PRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYE  448 (515)
Q Consensus       369 ~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~  448 (515)
                      .++.+...  ...|........+..+++++|||||..++|++|.|+..||.+|..+|+.|.+....+     ...|..|+
T Consensus       246 ~~~~~~~~--~~ip~~g~~~~~~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~~~-----~~~l~~Y~  318 (396)
T COG0644         246 GKILEYAA--GGIPEGGPASRPLVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEALEGG-----EEALAEYE  318 (396)
T ss_pred             CceEEEee--eecccCCcCCCccccCCEEEEeccccCCCCcccCcHHHHHHHHHHHHHHHHHHHHcC-----hhHHHHHH
Confidence            00111111  123433322222678899999999999999999999999999999999999987644     56788899


Q ss_pred             HHhhHHHHHHHHHHHHHHHhhc
Q 010200          449 AERKPANIVMMAVLDGFQKAYS  470 (515)
Q Consensus       449 ~~r~~~~~~~~~~s~~~~~~~~  470 (515)
                      +.++................+.
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~  340 (396)
T COG0644         319 RLLRKSLAREDLKSLRLLKLLL  340 (396)
T ss_pred             HHHHHHHHHHHHHHhhhhhhHH
Confidence            9988776666665555555443

>PRK11445 putative oxidoreductase; Provisional

Probab=99.97  E-value=1.1e-29  Score=255.20  Aligned_cols=307  Identities=19%  Similarity=0.169  Sum_probs=184.1

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      |||+||||||||+++|+.|++    . ++|+|+||.+.+...+      ....+|..+++++.++|+++|++........
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~----~-~~V~liE~~~~~~~~~------~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~   70 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAG----K-MKVIAIDKKHQCGTEG------FSKPCGGLLAPDAQKSFAKDGLTLPKDVIAN   70 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhc----c-CCEEEEECCCcccccc------ccCcCcCccCHHHHHHHHHcCCCCCcceeec
Confidence            799999999999999999999    5 8999999998652111      2234578899999999999998532111000


Q ss_pred             cccceEEEEeCCCccceeeeccc-CCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARD-VNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                      .....+..        +.+.... .......+.++|.+|.+.|.+.+ +.+ ++++++++|++++.              
T Consensus        71 ~~~~~~~~--------~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~-~~g-v~v~~~~~v~~i~~--------------  126 (351)
T PRK11445         71 PQIFAVKT--------IDLANSLTRNYQRSYINIDRHKFDLWLKSLI-PAS-VEVYHNSLCRKIWR--------------  126 (351)
T ss_pred             cccceeeE--------ecccccchhhcCCCcccccHHHHHHHHHHHH-hcC-CEEEcCCEEEEEEE--------------
Confidence            00000100        1111000 00111224699999999999864 455 99999999999976              


Q ss_pred             cccccccCCeeEEEc-CCCc--EEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCCc---eEEEEecCC
Q 010200          215 ATTLFTKGHLAKLDL-SDGT--SLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENY---CAWQRFLPA  288 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~-~~g~--~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  288 (515)
                            .++.+.+.+ ++|+  +++||+||+|||.+|.+|+.++.......+  .++...+....+.+   ..+..-...
T Consensus       127 ------~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S~vr~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~f~~~~~~  198 (351)
T PRK11445        127 ------EDDGYHVIFRADGWEQHITARYLVGADGANSMVRRHLYPDHQIRKY--VAIQQWFAEKHPVPFYSCIFDNEITD  198 (351)
T ss_pred             ------cCCEEEEEEecCCcEEEEEeCEEEECCCCCcHHhHHhcCCCchhhE--EEEEEEecCCCCCCCcceEEeccCCC
Confidence                  334566665 4664  689999999999999999998654322222  22232332222211   112222346


Q ss_pred             CcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCC
Q 010200          289 GPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVP  368 (515)
Q Consensus       289 g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  368 (515)
                      ++.|.+|..+.. .+....+.......    .+.+.+.+.+ +...+.+.           +.                 
T Consensus       199 ~~~W~~p~~~~~-~~g~~~~~~~~~~~----~~~l~~~l~~-~~~~~~~~-----------~~-----------------  244 (351)
T PRK11445        199 CYSWSISKDGYF-IFGGAYPMKDGRER----FETLKEKLSA-FGFQFGKP-----------VK-----------------  244 (351)
T ss_pred             ceEEEeCCCCcE-EecccccccchHHH----HHHHHHHHHh-cccccccc-----------cc-----------------
Confidence            788989875533 33222211111100    0111112211 11011100           00                 


Q ss_pred             cceEEeccceeeeccccccccc--cccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHH
Q 010200          369 PRVVKLASERMVFPLSLKHANN--YVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKK  446 (515)
Q Consensus       369 ~~~~~~~~~~~~~p~~~~~~~~--~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~  446 (515)
                           ..   ..+++.......  +.+++++|||||||.++|++|+|+|.|++||..|++.|.+..        +..++.
T Consensus       245 -----~~---~~~~~~~~~~~~~~~~~~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~~~--------~~~~~~  308 (351)
T PRK11445        245 -----TE---ACTVLRPSRWQDFVCGKDNAFLIGEAAGFISPSSLEGISYALDSARILSEVLNKQP--------EKLNTA  308 (351)
T ss_pred             -----cc---cccccCcccccccccCCCCEEEEEcccCccCCccCccHHHHHHhHHHHHHHHHhcc--------cchHHH
Confidence                 00   001111111122  335899999999999999999999999999999999998742        446889


Q ss_pred             HHHHhhHHH
Q 010200          447 YEAERKPAN  455 (515)
Q Consensus       447 Y~~~r~~~~  455 (515)
                      |++.++.-.
T Consensus       309 y~~~~~~~~  317 (351)
T PRK11445        309 YWRKTRKLR  317 (351)
T ss_pred             HHHHHHHHH
Confidence            998776644

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=99.97  E-value=4.1e-30  Score=281.15  Aligned_cols=329  Identities=17%  Similarity=0.169  Sum_probs=211.4

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcC--Cchhhhhh
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIG--AWQYVQQH  133 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lg--l~~~~~~~  133 (515)
                      ++|+||||||+||++|+.|++.+  +|++|+||||.+...          ..+.++.+++++++.|+.++  +...+...
T Consensus         1 m~V~IIGaGpAGLaaAi~L~~~~--~G~~V~vlEr~~~~~----------~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~   68 (765)
T PRK08255          1 MRIVCIGGGPAGLYFALLMKLLD--PAHEVTVVERNRPYD----------TFGWGVVFSDATLGNLRAADPVSAAAIGDA   68 (765)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhC--CCCeEEEEecCCCCc----------ccCcceEccHHHHHHHHhcCHHHHHHHHHh
Confidence            47999999999999999999952  289999999998663          33458899999999888776  22233222


Q ss_pred             hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (515)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~  213 (515)
                       ......+.+... +. ... .     .......++|.+|.+.|++++.+.| ++|+++++|+++..             
T Consensus        69 -~~~~~~~~~~~~-g~-~~~-~-----~g~~~~~i~R~~L~~~L~e~a~~~G-V~i~~g~~v~~i~~-------------  125 (765)
T PRK08255         69 -FNHWDDIDVHFK-GR-RIR-S-----GGHGFAGIGRKRLLNILQARCEELG-VKLVFETEVPDDQA-------------  125 (765)
T ss_pred             -cccCCceEEEEC-CE-EEE-E-----CCeeEecCCHHHHHHHHHHHHHHcC-CEEEeCCccCchhh-------------
Confidence             112333444322 11 111 0     1111245899999999999999998 99999998876632             


Q ss_pred             CcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCcccc---ccCCceEEEEEEEeecCCceEEEEecCCCc
Q 010200          214 SATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTG---WSYSQNAIICTVEHNKENYCAWQRFLPAGP  290 (515)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  290 (515)
                                         ....+|+||+|||.+|.+|+.+.....+   ..+....+.+.... .+...........++
T Consensus       126 -------------------~~~~~D~VVgADG~~S~vR~~~~~~~~~~~~~~~~~~~w~g~~~~-~~~~~~~~~~~~~g~  185 (765)
T PRK08255        126 -------------------LAADADLVIASDGLNSRIRTRYADTFQPDIDTRRCRFVWLGTHKV-FDAFTFAFEETEHGW  185 (765)
T ss_pred             -------------------hhcCCCEEEEcCCCCHHHHHHHHhhcCCceecCCCceEEecCCCc-ccceeEEEEecCCce
Confidence                               0147899999999999999986321111   11111111111110 011111111123443


Q ss_pred             E--EEEecCCCceEEEEEcCCCChHH--hhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCcccccccccc
Q 010200          291 I--ALLPIGDNFSNIVWTMNPKDASD--CKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFE  366 (515)
Q Consensus       291 ~--~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (515)
                      +  ..+|+.++...+++.+..+....  ....+.+...+.+.+.|. +|.+...        .+...             
T Consensus       186 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~-~~~~~~~--------li~~~-------------  243 (765)
T PRK08255        186 FQAHAYRFDDDTSTFIVETPEEVWRAAGLDEMSQEESIAFCEKLFA-DYLDGHP--------LMSNA-------------  243 (765)
T ss_pred             EEEEEeeeCCCCcEEEEEcCHHHHHhcCCccCCHHHHHHHHHHHhH-HhcCCCc--------ccccc-------------
Confidence            3  34677777666666554332211  122456677788877776 4533211        00000             


Q ss_pred             CCcceEEeccceeeeccccccccccccCc----EEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHH
Q 010200          367 VPPRVVKLASERMVFPLSLKHANNYVSKR----VVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEAS  442 (515)
Q Consensus       367 i~~~~~~~~~~~~~~p~~~~~~~~~~~~~----v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~  442 (515)
                        .. . ....+  .++.....++|..++    ++|+|||||+++|+.|||+|+||+||..|+++|....   .+  ...
T Consensus       244 --~~-~-~~~~w--~~~~~~~~~~w~~gr~~~~v~liGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~---~~--~~~  312 (765)
T PRK08255        244 --SH-L-RGSAW--INFPRVVCERWVHWNRRVPVVLMGDAAHTAHFSIGSGTKLALEDAIELARCLHEHP---GD--LPA  312 (765)
T ss_pred             --cc-c-cccee--eecceeccCCCccCCCcccEEEEEcCcccCCCCcchhHHHHHHHHHHHHHHHHHcc---cc--HHH
Confidence              00 0 00001  112222457898888    9999999999999999999999999999999998742   12  378


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHhhcCC
Q 010200          443 LLKKYEAERKPANIVMMAVLDGFQKAYSVD  472 (515)
Q Consensus       443 al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~  472 (515)
                      +|+.|++.|++++..++..++....+|...
T Consensus       313 al~~ye~~R~~r~~~~~~~s~~~~~~~~~~  342 (765)
T PRK08255        313 ALAAYEEERRVEVLRIQNAARNSTEWFENV  342 (765)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCceeeec
Confidence            999999999999999999999888877653

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=99.97  E-value=7.8e-30  Score=240.55  Aligned_cols=399  Identities=16%  Similarity=0.151  Sum_probs=288.4

Q ss_pred             CCCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhh
Q 010200           51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYV  130 (515)
Q Consensus        51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~  130 (515)
                      ..+..+||||||||.+|.++|+.|+|.    |.+|+|+||+-...+          .--|..++|.+...|.+||+.|.+
T Consensus        41 ~~~~~~DvIIVGAGV~GsaLa~~L~kd----GRrVhVIERDl~EPd----------RivGEllQPGG~~~L~~LGl~Dcv  106 (509)
T KOG1298|consen   41 RNDGAADVIIVGAGVAGSALAYALAKD----GRRVHVIERDLSEPD----------RIVGELLQPGGYLALSKLGLEDCV  106 (509)
T ss_pred             ccCCcccEEEECCcchHHHHHHHHhhC----CcEEEEEecccccch----------HHHHHhcCcchhHHHHHhCHHHHh
Confidence            344578999999999999999999996    999999999976532          333789999999999999999999


Q ss_pred             hhhhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccC
Q 010200          131 QQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVD  210 (515)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~  210 (515)
                      +....+...+..++.+.....+.++....+..+.|..++..+|.+-|++.+...++|++..| .|.++..         +
T Consensus       107 e~IDAQ~v~Gy~ifk~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeG-tV~sLle---------e  176 (509)
T KOG1298|consen  107 EGIDAQRVTGYAIFKDGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEG-TVKSLLE---------E  176 (509)
T ss_pred             hcccceEeeeeEEEeCCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeee-eHHHHHh---------c
Confidence            88777788888999888888888888888888888889999999999999999998998877 6777654         1


Q ss_pred             CCCCcccccccCCeeEEEcCCCc--EEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeec--CCceEEEEec
Q 010200          211 STPSATTLFTKGHLAKLDLSDGT--SLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK--ENYCAWQRFL  286 (515)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~~~g~--~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  286 (515)
                      ++        ...+++....+|+  +..|.+.|.|||.+|.+||.+-.+... ....+++........  .....+..+.
T Consensus       177 ~g--------vvkGV~yk~k~gee~~~~ApLTvVCDGcfSnlRrsL~~~~v~-~V~S~fVG~vl~N~~l~~p~hghvIL~  247 (509)
T KOG1298|consen  177 EG--------VVKGVTYKNKEGEEVEAFAPLTVVCDGCFSNLRRSLCDPKVE-EVPSYFVGLVLKNCRLPAPNHGHVILS  247 (509)
T ss_pred             cC--------eEEeEEEecCCCceEEEecceEEEecchhHHHHHHhcCCccc-ccchheeeeeecCCCCCCCCcceEEec
Confidence            00        2234444444454  678999999999999999999432221 133333333222221  1134445566


Q ss_pred             CCCcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCcccccccccc
Q 010200          287 PAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFE  366 (515)
Q Consensus       287 ~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (515)
                      ...++.++|+.....++.+-.+..+...   ....+...++.+...+.-.+.          ..+.|+....        
T Consensus       248 ~pspil~Y~ISStEvRcl~~v~g~~~Ps---i~~gem~~~mk~~v~PqiP~~----------lR~~F~~av~--------  306 (509)
T KOG1298|consen  248 KPSPILVYQISSTEVRCLVDVPGQKLPS---IANGEMATYMKESVAPQIPEK----------LRESFLEAVD--------  306 (509)
T ss_pred             CCCcEEEEEecchheEEEEecCcccCCc---ccchhHHHHHHHhhCcCCCHH----------HHHHHHHHhh--------
Confidence            7889999999999999998887654332   222233333333222110000          1111111000        


Q ss_pred             CCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHH
Q 010200          367 VPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKK  446 (515)
Q Consensus       367 i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~  446 (515)
                              .....+.|-...++......+++|+|||..+-+|.+|.||.-|+.|...|-+.|.....=.+.....+.++.
T Consensus       307 --------~g~irsmpn~~mpa~~~~~~G~illGDAfNMRHPltggGMtV~l~Di~lLr~ll~pl~dL~d~ekv~~~i~s  378 (509)
T KOG1298|consen  307 --------EGNIRSMPNSSMPATLNDKKGVILLGDAFNMRHPLTGGGMTVALSDIVLLRRLLKPLPDLSDAEKVSDYIKS  378 (509)
T ss_pred             --------ccchhcCccccCCCCcCCCCceEEEcccccccCCccCCceEeehhHHHHHHHHhccccccccHHHHHHHHHH
Confidence                    000111333333444455678999999999999999999999999999999999874322211122567899


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHhhcC-CCChHHHHHHHHHHhcccChhHHHHHHHHhhcCCCCCCCC
Q 010200          447 YEAERKPANIVMMAVLDGFQKAYSV-DFGPLNILRAAAFHGAQYISPLKRNIISYASGEQRLPLPL  511 (515)
Q Consensus       447 Y~~~r~~~~~~~~~~s~~~~~~~~~-~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  511 (515)
                      |...|++....+.-.+..++++|.. .+-....+|+..+..+..=..-....+...+|++.+|+.+
T Consensus       379 Fy~~RKp~s~tINtLa~Aly~vf~as~dea~~~mr~gCfdYl~~GG~c~sGpv~lLsGlnP~Pl~L  444 (509)
T KOG1298|consen  379 FYWIRKPYSATINTLANALYQVFVASTDEARKAMRKGCFDYLKRGGFCVSGPVALLSGLNPRPLSL  444 (509)
T ss_pred             HHHhhcchhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCccccchHHHhcCCCCCchHH
Confidence            9999999999999999999999977 6777889999999998886667788999999999999754

>PRK10015 oxidoreductase; Provisional

Probab=99.97  E-value=4e-28  Score=249.33  Aligned_cols=348  Identities=16%  Similarity=0.158  Sum_probs=203.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCch-hhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQ-YVQQ  132 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~-~~~~  132 (515)
                      .+||||||||||||+++|+.|++.    |++|+|+||.+.++.+.+         .+..+....++.+. -++.. ...+
T Consensus         4 ~~~DViIVGgGpAG~~aA~~LA~~----G~~VlliEr~~~~g~k~~---------~gg~i~~~~~~~l~-~~~~~~~~i~   69 (429)
T PRK10015          4 DKFDAIVVGAGVAGSVAALVMARA----GLDVLVIERGDSAGCKNM---------TGGRLYAHTLEAII-PGFAASAPVE   69 (429)
T ss_pred             cccCEEEECcCHHHHHHHHHHHhC----CCeEEEEecCCCCCcccc---------cCceeecccHHHHc-ccccccCCcc
Confidence            469999999999999999999996    999999999988754432         12223323322221 01111 0011


Q ss_pred             hhccccceEEEEeCCCccceeeecccCCC-CcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCC
Q 010200          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNK-EILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDS  211 (515)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~  211 (515)
                      ... ....+.+....+...+.+....... ...++.+.|..|+++|.+++++.| ++++.+++|+++..           
T Consensus        70 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~G-v~i~~~~~V~~i~~-----------  136 (429)
T PRK10015         70 RKV-TREKISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAG-AQFIPGVRVDALVR-----------  136 (429)
T ss_pred             ccc-cceeEEEEeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcC-CEEECCcEEEEEEE-----------
Confidence            111 1122333333332223322211111 223688999999999999999988 99999999999875           


Q ss_pred             CCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCC-ceEEEEEEEeecC-----------Cc
Q 010200          212 TPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYS-QNAIICTVEHNKE-----------NY  279 (515)
Q Consensus       212 ~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~-~~~~~~~~~~~~~-----------~~  279 (515)
                               .++.+.....++.++.||+||+|||.+|.+++.++......... ..++...+..+..           ..
T Consensus       137 ---------~~~~v~~v~~~~~~i~A~~VI~AdG~~s~v~~~lg~~~~~~~~~~~~gvk~~~~~~~~~i~~~~~~~~~~g  207 (429)
T PRK10015        137 ---------EGNKVTGVQAGDDILEANVVILADGVNSMLGRSLGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEG  207 (429)
T ss_pred             ---------eCCEEEEEEeCCeEEECCEEEEccCcchhhhcccCCCcCCCcCeEEEEEEEEEeCCHHHhhHhhcCCCCCC
Confidence                     22334432334557999999999999999999987643221111 1222222222211           01


Q ss_pred             eEEEEec--CCC---cEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccc
Q 010200          280 CAWQRFL--PAG---PIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFR  354 (515)
Q Consensus       280 ~~~~~~~--~~g---~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (515)
                      ..|..+.  ..+   ..|++|. .+..++.+.+...... ....++.++++.+.+.      +           .+..++
T Consensus       208 ~~w~~~g~~~~g~~g~G~~~~~-~d~v~vGv~~~~~~~~-~~~~~~~~~l~~~~~~------p-----------~~~~~~  268 (429)
T PRK10015        208 AAWLFAGSPSDGLMGGGFLYTN-KDSISLGLVCGLGDIA-HAQKSVPQMLEDFKQH------P-----------AIRPLI  268 (429)
T ss_pred             eEEEecCccCCCCCCceEEEEc-CCcEEEEEEEehhhhc-cCCCCHHHHHHHHhhC------h-----------HHHHHh
Confidence            1122111  111   3444553 3455555433221111 1224556666555331      0           011110


Q ss_pred             cCccccccccccCCcceEEeccceeeeccccc-cccccccCcEEEEcccccccC--CccccchhhcHHHHHHHHHHHHHh
Q 010200          355 GDATLSAKECFEVPPRVVKLASERMVFPLSLK-HANNYVSKRVVLIGDAAHTVH--PLAGQGVNLGFGDASTLSRIIAEG  431 (515)
Q Consensus       355 ~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~-~~~~~~~~~v~lvGDAAh~~~--P~~G~G~n~al~da~~La~~l~~~  431 (515)
                      ...            ++.+..  .+..|.... ..++...+++++|||||+.++  |++|+|+++||.++..+|+++.++
T Consensus       269 ~~~------------~~~e~~--~~~ip~gg~~~~~~~~~~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~a  334 (429)
T PRK10015        269 SGG------------KLLEYS--AHMVPEGGLAMVPQLVNDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAA  334 (429)
T ss_pred             cCC------------EEEEEe--eEEcccCCcccCCccccCCeEEEecccccccccCccccchhHHHHHHHHHHHHHHHH
Confidence            000            001111  112343321 245677899999999999998  569999999999999999999999


Q ss_pred             HhcCCCcchHHHHHHHHHHhhHH-HHHHHHHHHHHHHhhcCC
Q 010200          432 IAVGADIGEASLLKKYEAERKPA-NIVMMAVLDGFQKAYSVD  472 (515)
Q Consensus       432 ~~~~~~~~~~~al~~Y~~~r~~~-~~~~~~~s~~~~~~~~~~  472 (515)
                      +..+ |. +...|+.|++.++.. ..+-+...+.+..+++.+
T Consensus       335 ~~~~-d~-s~~~l~~Y~~~~~~~~~~~~l~~~~~~~~~~~~~  374 (429)
T PRK10015        335 KERA-DF-SASSLAQYKRELEQSCVMRDMQHFRKIPALMENP  374 (429)
T ss_pred             HhcC-CC-ccccHHHHHHHHHHCHHHHHHHHHhChHhhhcCc
Confidence            8765 33 356789999998877 444466677777777665

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.96  E-value=8.4e-27  Score=239.83  Aligned_cols=343  Identities=16%  Similarity=0.168  Sum_probs=201.9

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      ..+||+||||||||+++|+.|++.    |++|+|+||.+.++.+.+         .+..+....++   .+  +..+...
T Consensus         4 ~~~DViIVGaGpAG~~aA~~La~~----G~~V~llEr~~~~g~k~~---------~gg~l~~~~~e---~l--~~~~~~~   65 (428)
T PRK10157          4 DIFDAIIVGAGLAGSVAALVLARE----GAQVLVIERGNSAGAKNV---------TGGRLYAHSLE---HI--IPGFADS   65 (428)
T ss_pred             ccCcEEEECcCHHHHHHHHHHHhC----CCeEEEEEcCCCCCCccc---------ccceechhhHH---HH--hhhhhhc
Confidence            469999999999999999999996    999999999988754432         12223333322   21  1111110


Q ss_pred             ----hccccceEEEEeCCCccceeeeccc-CCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcc
Q 010200          134 ----RHAYFDKMQVWDYTGLGYTKYNARD-VNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSIS  208 (515)
Q Consensus       134 ----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~  208 (515)
                          .......+.+....+...+.+.... ......++.+.|..|+++|.+.+++.| ++++.+++|++++.        
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~G-v~i~~~~~V~~i~~--------  136 (428)
T PRK10157         66 APVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAG-AQLITGIRVDNLVQ--------  136 (428)
T ss_pred             CcccceeeeeeEEEEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCC-CEEECCCEEEEEEE--------
Confidence                0001122333333332222222111 112334688999999999999999988 99999999999975        


Q ss_pred             cCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEE--EEeec----------
Q 010200          209 VDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICT--VEHNK----------  276 (515)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~--~~~~~----------  276 (515)
                                  +++.+.....+|.++.||+||+|||.+|.+++.++..... .....++...  +..+.          
T Consensus       137 ------------~~g~v~~v~~~g~~i~A~~VI~A~G~~s~l~~~lgl~~~~-~~~~~av~~~~~~~~~~~~~~~~~~~~  203 (428)
T PRK10157        137 ------------RDGKVVGVEADGDVIEAKTVILADGVNSILAEKLGMAKRV-KPTDVAVGVKELIELPKSVIEDRFQLQ  203 (428)
T ss_pred             ------------eCCEEEEEEcCCcEEECCEEEEEeCCCHHHHHHcCCCCCC-CCcEEEEEEEEEEEcCHHHHHHhhccC
Confidence                        2233433335667899999999999999999998765322 2233333222  22211          


Q ss_pred             -CCceEEEEec-CC----CcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccch
Q 010200          277 -ENYCAWQRFL-PA----GPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMF  350 (515)
Q Consensus       277 -~~~~~~~~~~-~~----g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (515)
                       +....+.... +.    |..|+++ ..+..++.+.+..+... ....+..++++.+.+.      +.       ..+.+
T Consensus       204 ~~~g~~~~~~g~~~~g~~ggG~~~~-~~~~~svG~~~~~~~~~-~~~~~~~~~l~~~~~~------p~-------v~~~~  268 (428)
T PRK10157        204 GNQGAACLFAGSPTDGLMGGGFLYT-NENTLSLGLVCGLHHLH-DAKKSVPQMLEDFKQH------PA-------VAPLI  268 (428)
T ss_pred             CCCCeEEEEEECCCCCCcCceeEEE-cCCeEEEEEEEehHHhc-ccCCCHHHHHHHHHhC------ch-------HHHHh
Confidence             0111222211 11    1235555 34455555544332211 1123455555554331      00       00111


Q ss_pred             hccccCccccccccccCCcceEEeccceeeecccc-ccccccccCcEEEEcccccccCC--ccccchhhcHHHHHHHHHH
Q 010200          351 SWFRGDATLSAKECFEVPPRVVKLASERMVFPLSL-KHANNYVSKRVVLIGDAAHTVHP--LAGQGVNLGFGDASTLSRI  427 (515)
Q Consensus       351 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~-~~~~~~~~~~v~lvGDAAh~~~P--~~G~G~n~al~da~~La~~  427 (515)
                      .+    ..            ..+  -.....|... ...++...+++++|||||..++|  ++|+|++.|+.++..+|++
T Consensus       269 ~~----~~------------~~~--~~~~~ip~~g~~~~~~~~~~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAea  330 (428)
T PRK10157        269 AG----GK------------LVE--YSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKT  330 (428)
T ss_pred             CC----Ce------------EHH--HHhhHhhcCCcccCCceecCCeEEEecccccccccCceeeeHHHHHHHHHHHHHH
Confidence            11    00            000  0000122221 12355677999999999999998  6999999999999999999


Q ss_pred             HHHhHhcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC
Q 010200          428 IAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSV  471 (515)
Q Consensus       428 l~~~~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~  471 (515)
                      +.+++..++ . +...|..|++..+...-+-+...+.+..++..
T Consensus       331 i~~a~~~~~-~-s~~~l~~Y~~~l~~~~~~~l~~~~~~~~~~~~  372 (428)
T PRK10157        331 VLSAMKSDD-F-SKQKLAEYRQHLESGPLRDMRMYQKLPAFLDN  372 (428)
T ss_pred             HHHHHhcCC-c-chhhHHHHHHHHHHhHHHHHHHHhccHHHhcC
Confidence            999987653 2 46689999998777654555555555555544

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=99.95  E-value=1.4e-25  Score=231.01  Aligned_cols=340  Identities=18%  Similarity=0.226  Sum_probs=213.0

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchh--hhhhh
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQY--VQQHR  134 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~--~~~~~  134 (515)
                      ||+|||||+||.++|..|++..- ..++|+|+|+...+.           .+-|....|....+++.+|+.+.  +.+..
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~~-~~~~v~lie~~~~~~-----------~~vGe~~~p~~~~~~~~lgi~e~~~~~~~~   68 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAGP-DALSVTLIESPDIPR-----------IGVGESTLPSLRPFLRRLGIDEADFMRACD   68 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHCT-CSSEEEEEE-SSS--------------SSEEE--THHHHCHHHHT--HHHHCHHCT
T ss_pred             CEEEECCCHHHHHHHHHHHHhCC-CCcEEEEEecCCCCC-----------CCccccchHHHHHHHHHcCCChHHHHHHhC
Confidence            79999999999999999999621 018999999998763           33478888998899999999876  55544


Q ss_pred             ccccceEEEEeCCC-ccceeeeccc------------------------------------------------CCCCcce
Q 010200          135 HAYFDKMQVWDYTG-LGYTKYNARD------------------------------------------------VNKEILG  165 (515)
Q Consensus       135 ~~~~~~~~~~~~~~-~~~~~~~~~~------------------------------------------------~~~~~~~  165 (515)
                      .....++.+.+... ......+...                                                .....++
T Consensus        69 ~~~k~g~~f~~w~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  148 (454)
T PF04820_consen   69 ATFKLGIRFVNWGERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYA  148 (454)
T ss_dssp             -EEESEEEEESSSSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-E
T ss_pred             CeEeccEEeeecCCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCee
Confidence            44455566643221 1111111110                                                0113467


Q ss_pred             EEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecC
Q 010200          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADG  245 (515)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG  245 (515)
                      |.++|..+.+.|++.+.+.| |+++.+ +|+++..                  ++++....|+.++|.++.||+||+|+|
T Consensus       149 yhlDR~~fd~~L~~~A~~~G-v~~~~g-~V~~v~~------------------~~~g~i~~v~~~~g~~i~ad~~IDASG  208 (454)
T PF04820_consen  149 YHLDRAKFDQFLRRHAEERG-VEVIEG-TVVDVEL------------------DEDGRITAVRLDDGRTIEADFFIDASG  208 (454)
T ss_dssp             EEEEHHHHHHHHHHHHHHTT--EEEET--EEEEEE-------------------TTSEEEEEEETTSEEEEESEEEE-SG
T ss_pred             EEEeHHHHHHHHHHHHhcCC-CEEEeC-EEEEEEE------------------cCCCCEEEEEECCCCEEEEeEEEECCC
Confidence            99999999999999999998 999988 5888876                  112234578888999999999999999


Q ss_pred             CCchhhhhc-CCccccccCC---ceEEEEEEEeec-CCceEEEEecCCCcEEEEecCCCceEEEEEcCCCChHHhhcCCH
Q 010200          246 GKSRVRELA-GFKTTGWSYS---QNAIICTVEHNK-ENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNE  320 (515)
Q Consensus       246 ~~S~vr~~l-~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  320 (515)
                      ..|.+.+.. +.........   ..++...++... ..........+.||+|.+|+.++..+ .+.+.....      ++
T Consensus       209 ~~s~L~~~~L~~~~~~~~~~L~~d~av~~~~~~~~~~~~~T~~~a~~~GW~W~IPL~~~~~~-G~V~s~~~~------s~  281 (454)
T PF04820_consen  209 RRSLLARKALKVGFRDWSDWLPNDRAVAVQVPNEDPPEPYTRSTAFEAGWIWYIPLQNRRGS-GYVYSSDFI------SD  281 (454)
T ss_dssp             GG-CCCCCCT-EEEEEETTTCEEEEEEEEEEE-SSCTTSSEEEEEESSEEEEEEEESSEEEE-EEEEETTTS------HH
T ss_pred             ccchhhHhhhcCCCccccccccccEEEEEecCcCCCCCCceeEEecCCceEEEccCCCcceE-EEEeccccC------CH
Confidence            999987773 3332222221   234444444443 22444455668999999999998777 333333222      34


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCcceEEeccceeeeccccccccccccCcEEEEc
Q 010200          321 DDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIG  400 (515)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvG  400 (515)
                      +.....+.+.+..    ...                         ..+ .         ..++......+...+|+++||
T Consensus       282 ~~A~~~l~~~l~~----~~~-------------------------~~~-~---------~i~~~~g~~~~~~~~n~vavG  322 (454)
T PF04820_consen  282 DEAEAELLAYLGG----SPE-------------------------AEP-R---------HIRFRSGRRKQFWGKNCVAVG  322 (454)
T ss_dssp             HHHHHHHHHHHTC----HCT-------------------------TSC-E---------EEE-S-EEESSSEETTEEE-C
T ss_pred             HHHHHHHHHhcch----hhh-------------------------cch-h---------hhcccccchhhcccCCEEEEc
Confidence            4445555554430    000                         000 1         122222224455578899999


Q ss_pred             ccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC-CCChHHHH
Q 010200          401 DAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSV-DFGPLNIL  479 (515)
Q Consensus       401 DAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~-~~~~~~~~  479 (515)
                      |||++++|+.++|+.+++..+..|++.|...     +. ...+++.|++........+.++....+.+... +++++...
T Consensus       323 dAAgFiDPL~StGI~la~~aa~~l~~~l~~~-----~~-~~~~~~~Yn~~~~~~~~~~~~fi~~hY~~~~r~ds~FW~~~  396 (454)
T PF04820_consen  323 DAAGFIDPLESTGIHLALSAAEALAEALPDD-----DF-SPAALDRYNRRMRREYERIRDFISLHYQLSRRRDSPFWRAR  396 (454)
T ss_dssp             CCTEE--GGGSHHHHHHHHHHHHHHHTHHCT-----TC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHS-SSHHHHHH
T ss_pred             chhhccCccccccHHHHHHHHHHHHHhcccC-----CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCHHHHhc
Confidence            9999999999999999999888888877652     22 26789999999999999998888887776444 34555544


Q ss_pred             H
Q 010200          480 R  480 (515)
Q Consensus       480 r  480 (515)
                      |
T Consensus       397 ~  397 (454)
T PF04820_consen  397 R  397 (454)
T ss_dssp             C
T ss_pred             c
Confidence            4

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=99.94  E-value=2.7e-24  Score=219.80  Aligned_cols=304  Identities=20%  Similarity=0.234  Sum_probs=185.2

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhcc
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHA  136 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~  136 (515)
                      ||+||||||||+++|+.|++.    |++|+|+|+.+..+.           .....++...   ++.+++.+.+ ..   
T Consensus         1 DviIiGaG~AGl~~A~~la~~----g~~v~liE~~~~~~~-----------~~~~~~~~~~---~~~~~~~~~~-~~---   58 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARP----GLRVQLIEPHPPIPG-----------NHTYGVWDDD---LSDLGLADCV-EH---   58 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhC----CCeEEEEccCCCCCC-----------CccccccHhh---hhhhchhhHH-hh---
Confidence            799999999999999999996    999999999875420           1122333322   3344432222 11   


Q ss_pred             ccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcc
Q 010200          137 YFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSAT  216 (515)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~  216 (515)
                      .+.....+..... ...       .......+++..|.+.|.+.+.+.| ++++ ..+|++++.                
T Consensus        59 ~~~~~~~~~~~~~-~~~-------~~~~~~~i~~~~l~~~l~~~~~~~g-v~~~-~~~v~~i~~----------------  112 (388)
T TIGR01790        59 VWPDVYEYRFPKQ-PRK-------LGTAYGSVDSTRLHEELLQKCPEGG-VLWL-ERKAIHAEA----------------  112 (388)
T ss_pred             cCCCceEEecCCc-chh-------cCCceeEEcHHHHHHHHHHHHHhcC-cEEE-ccEEEEEEe----------------
Confidence            2222111111110 001       1122246999999999999998887 8886 558888865                


Q ss_pred             cccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecC----CceEEEEec-C----
Q 010200          217 TLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKE----NYCAWQRFL-P----  287 (515)
Q Consensus       217 ~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~----  287 (515)
                         +....+.+.+++|.+++|++||+|||.+|.+++........  + +.+....+....+    ....+..+. .    
T Consensus       113 ---~~~~~~~v~~~~g~~~~a~~VI~A~G~~s~~~~~~~~~~~~--~-q~~~G~~~~~~~~~~~~~~~~~~d~~~~~~~~  186 (388)
T TIGR01790       113 ---DGVALSTVYCAGGQRIQARLVIDARGFGPLVQYVRFPLNVG--F-QVAYGVEARLSRPPHGPSSMVIMDARVDQLAA  186 (388)
T ss_pred             ---cCCceeEEEeCCCCEEEeCEEEECCCCchhcccccCCCCce--E-EEEEEEEEEEcCCCCCCCceEEEecccccccc
Confidence               11355778888888899999999999999765433111111  1 1222223333211    111222211 1    


Q ss_pred             -----CC--cEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcC-CCCCCCCCCCCCcccchhccccCccc
Q 010200          288 -----AG--PIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDY-GYGPHPKSISSGSVDMFSWFRGDATL  359 (515)
Q Consensus       288 -----~g--~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (515)
                           .+  ++|++|.+++...+.......    ....+.+.+.+.+.+.+.. +|...                     
T Consensus       187 ~~~~~~~~~f~~~lP~~~~~~~v~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~---------------------  241 (388)
T TIGR01790       187 PELKGYRPTFLYAMPLGSTRVFIEETSLAD----RPALPRDRLRQRILARLNAQGWQIK---------------------  241 (388)
T ss_pred             ccccCCCCceEEEeecCCCeEEEEeccccC----CCCCCHHHHHHHHHHHHHHcCCeee---------------------
Confidence                 12  789999988776554322111    1124556666666664430 11100                     


Q ss_pred             cccccccCCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcc
Q 010200          360 SAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIG  439 (515)
Q Consensus       360 ~~~~~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~  439 (515)
                                .+.  ..+...+|+....  .+..+++++||||||.++|.+|+|++.|+++|..|++.|.+++..+    
T Consensus       242 ----------~i~--~~~~~~iP~~~~~--~~~~~rv~liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~~~----  303 (388)
T TIGR01790       242 ----------TIE--EEEWGALPVGLPG--PFLPQRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQS----  303 (388)
T ss_pred             ----------EEE--eeeeEEEecccCC--CccCCCeeeeechhcCcCCcccccHHHHHHHHHHHHHHHHHHhccC----
Confidence                      011  1122345664432  2367899999999999999999999999999999999999987644    


Q ss_pred             hHHHHHHHHHHhhHHHHH
Q 010200          440 EASLLKKYEAERKPANIV  457 (515)
Q Consensus       440 ~~~al~~Y~~~r~~~~~~  457 (515)
                      ...+++.|++.++++..+
T Consensus       304 ~~~~~~~~~~~~~~~~~~  321 (388)
T TIGR01790       304 SELATAAWDGLWPTERRR  321 (388)
T ss_pred             HHHHHHHHHHhchHHHHH
Confidence            367889998776665554

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PLN02697 lycopene epsilon cyclase

Probab=99.93  E-value=3.9e-23  Score=214.63  Aligned_cols=313  Identities=19%  Similarity=0.207  Sum_probs=194.7

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhh
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (515)
                      ...+||+|||||||||++|+.|++.    |++|+|+|+.....             ...+++.   ..++.+++.+.+..
T Consensus       106 ~~~~DVvIVGaGPAGLalA~~Lak~----Gl~V~LIe~~~p~~-------------~n~GvW~---~~l~~lgl~~~i~~  165 (529)
T PLN02697        106 DGTLDLVVIGCGPAGLALAAESAKL----GLNVGLIGPDLPFT-------------NNYGVWE---DEFKDLGLEDCIEH  165 (529)
T ss_pred             cCcccEEEECcCHHHHHHHHHHHhC----CCcEEEecCcccCC-------------Cccccch---hHHHhcCcHHHHHh
Confidence            3458999999999999999999996    99999999863220             0123332   35677787554432


Q ss_pred             hhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCC
Q 010200          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (515)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~  212 (515)
                          .+....++...+.. ...      ...+ ..++|..|.+.|.+.+.+.| +++ .+++|++++.            
T Consensus       166 ----~w~~~~v~~~~~~~-~~~------~~~Y-g~V~R~~L~~~Ll~~a~~~G-V~~-~~~~V~~I~~------------  219 (529)
T PLN02697        166 ----VWRDTIVYLDDDKP-IMI------GRAY-GRVSRTLLHEELLRRCVESG-VSY-LSSKVDRITE------------  219 (529)
T ss_pred             ----hcCCcEEEecCCce-eec------cCcc-cEEcHHHHHHHHHHHHHhcC-CEE-EeeEEEEEEE------------
Confidence                22223333322211 111      1111 25899999999999998887 887 5779999875            


Q ss_pred             CCcccccccCCeeE-EEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccC-CceEEEEEEEeecC-C---ceEEEEec
Q 010200          213 PSATTLFTKGHLAK-LDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSY-SQNAIICTVEHNKE-N---YCAWQRFL  286 (515)
Q Consensus       213 ~~~~~~~~~~~~~~-v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~-~~~~~~~~~~~~~~-~---~~~~~~~~  286 (515)
                              .++.+. +.+.+|.++.|++||+|||.+|.  +.++........ .+.+....++.... .   ...+.-|.
T Consensus       220 --------~~~~~~vv~~~dG~~i~A~lVI~AdG~~S~--rl~~~~~~~~~~~~Q~a~Gi~ve~~~~~~d~~~~vlMD~r  289 (529)
T PLN02697        220 --------ASDGLRLVACEDGRVIPCRLATVASGAASG--RLLQYEVGGPRVCVQTAYGVEVEVENNPYDPSLMVFMDYR  289 (529)
T ss_pred             --------cCCcEEEEEEcCCcEEECCEEEECCCcChh--hhhccccCCCCcccEEEEEEEEEecCCCCCcchheeeccc
Confidence                    223333 45567888999999999999993  233222111112 22333334444321 1   11111111


Q ss_pred             -------------CCCcEEEEecCCCceEEEEE-c-CCCChHHhhcCCHHHHHHHHHHhhcC-CCCCCCCCCCCCcccch
Q 010200          287 -------------PAGPIALLPIGDNFSNIVWT-M-NPKDASDCKSMNEDDFVKILNHALDY-GYGPHPKSISSGSVDMF  350 (515)
Q Consensus       287 -------------~~g~~~~~p~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  350 (515)
                                   ..+++|++|++++..++-.. + ..+      ..+.+.+.+.+.+++.. +|..             
T Consensus       290 ~~~~~~~~~~~~~~p~FlYvlP~~~~~~~VE~T~l~~~~------~l~~~~l~~~L~~~l~~~Gi~~-------------  350 (529)
T PLN02697        290 DYFKEKVSHLEAEYPTFLYAMPMSSTRVFFEETCLASKD------AMPFDLLKKRLMSRLETMGIRI-------------  350 (529)
T ss_pred             cccccccccccCCCceEEEEeecCCCeEEEEEeeeccCC------CCCHHHHHHHHHHHHHhCCCCc-------------
Confidence                         12478999999988777332 2 211      13345566666665531 1110             


Q ss_pred             hccccCccccccccccCCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHH
Q 010200          351 SWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAE  430 (515)
Q Consensus       351 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~  430 (515)
                                        .++  ...+...+|+.. ..+.. .++++++||||+.++|.+|.|+..++.+|..+|+.|.+
T Consensus       351 ------------------~~i--~~~E~g~iPm~g-~~~~~-~~~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia~  408 (529)
T PLN02697        351 ------------------LKT--YEEEWSYIPVGG-SLPNT-EQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIAR  408 (529)
T ss_pred             ------------------ceE--EEEEeeeecCCC-CCccc-CCCeeEeehhhcCCCCchhhhHHHHHHhHHHHHHHHHH
Confidence                              001  122233466643 33333 67899999999999999999999999999999999999


Q ss_pred             hHhcCCC-------cchHHHHHHHHHHhhHHHHHHHHHH
Q 010200          431 GIAVGAD-------IGEASLLKKYEAERKPANIVMMAVL  462 (515)
Q Consensus       431 ~~~~~~~-------~~~~~al~~Y~~~r~~~~~~~~~~s  462 (515)
                      .++.+.+       -....+++.|+..|.....+....-
T Consensus       409 ~l~~~~~~~~~~~~~~~~~~l~~~~~lw~~e~~r~~~~~  447 (529)
T PLN02697        409 ILKNVSSGGKLGTSNSSNISMQAWNTLWPQERKRQRAFF  447 (529)
T ss_pred             HhhCCccccccccccchHHHHHHHHHhChHHHHHHHHHH
Confidence            9986631       1346789999998877665554433

>PLN02463 lycopene beta cyclase

Probab=99.91  E-value=1.3e-21  Score=200.36  Aligned_cols=288  Identities=20%  Similarity=0.207  Sum_probs=179.3

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhh
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQ  131 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~  131 (515)
                      ....+||+||||||||+++|+.|++.    |++|+|+|+.+...           ..+..+++   .+.++.+|+.+.+.
T Consensus        25 ~~~~~DVvIVGaGpAGLalA~~La~~----Gl~V~liE~~~~~~-----------~p~~~g~w---~~~l~~lgl~~~l~   86 (447)
T PLN02463         25 KSRVVDLVVVGGGPAGLAVAQQVSEA----GLSVCCIDPSPLSI-----------WPNNYGVW---VDEFEALGLLDCLD   86 (447)
T ss_pred             cccCceEEEECCCHHHHHHHHHHHHC----CCeEEEeccCccch-----------hccccchH---HHHHHHCCcHHHHH
Confidence            34569999999999999999999996    99999999976431           01112222   34677788876654


Q ss_pred             hhhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCC
Q 010200          132 QHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDS  211 (515)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~  211 (515)
                      .. .   ....++...... ..      ....+ ..++|.+|.+.|.+++.+.| ++++ ..+|++++.           
T Consensus        87 ~~-w---~~~~v~~~~~~~-~~------~~~~y-~~V~R~~L~~~Ll~~~~~~G-V~~~-~~~V~~I~~-----------  141 (447)
T PLN02463         87 TT-W---PGAVVYIDDGKK-KD------LDRPY-GRVNRKKLKSKMLERCIANG-VQFH-QAKVKKVVH-----------  141 (447)
T ss_pred             hh-C---CCcEEEEeCCCC-cc------ccCcc-eeEEHHHHHHHHHHHHhhcC-CEEE-eeEEEEEEE-----------
Confidence            42 1   222222221111 00      11122 35899999999999998887 8887 469999976           


Q ss_pred             CCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCc-eEEEEEEEeecCC---c-eEEEEe-
Q 010200          212 TPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQ-NAIICTVEHNKEN---Y-CAWQRF-  285 (515)
Q Consensus       212 ~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~-~~~~~~~~~~~~~---~-~~~~~~-  285 (515)
                               .+..+.|.+++|.++.||+||+|||.+|++++.-.   . ..... .++...+....+.   + ..+..| 
T Consensus       142 ---------~~~~~~V~~~dG~~i~A~lVI~AdG~~s~l~~~~~---~-~~~g~Q~a~Gi~~ev~~~p~d~~~~vlMD~r  208 (447)
T PLN02463        142 ---------EESKSLVVCDDGVKIQASLVLDATGFSRCLVQYDK---P-FNPGYQVAYGILAEVDSHPFDLDKMLFMDWR  208 (447)
T ss_pred             ---------cCCeEEEEECCCCEEEcCEEEECcCCCcCccCCCC---C-CCccceeeeeEEeecCCCCcccccchhhhcC
Confidence                     33557888889989999999999999999864321   1 11121 1222222222111   1 100000 


Q ss_pred             ----c-----------CCCcEEEEecCCCceEEEEEc--CCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCccc
Q 010200          286 ----L-----------PAGPIALLPIGDNFSNIVWTM--NPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVD  348 (515)
Q Consensus       286 ----~-----------~~g~~~~~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (515)
                          .           -.+++|++|++++...+-...  ...      ..+.+...+.+.+++. .++-.          
T Consensus       209 ~~~~~~~~~~~~~~~~~p~FlY~~P~~~~~~~vEeT~l~s~~------~~~~~~lk~~L~~~l~-~~Gi~----------  271 (447)
T PLN02463        209 DSHLGNNPELRARNSKLPTFLYAMPFSSNRIFLEETSLVARP------GLPMDDIQERMVARLR-HLGIK----------  271 (447)
T ss_pred             hhhccccchhhhccCCCCceEEEEecCCCeEEEEeeeeecCC------CCCHHHHHHHHHHHHH-HCCCC----------
Confidence                0           035789999998875544331  111      1234555555555443 11100          


Q ss_pred             chhccccCccccccccccCCcceEEe-ccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHH
Q 010200          349 MFSWFRGDATLSAKECFEVPPRVVKL-ASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRI  427 (515)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~  427 (515)
                                            +.++ ..+...+|+... .+ ...++++++||||+.++|.+|.|+..++..|..+|++
T Consensus       272 ----------------------~~~i~~~E~~~IPmg~~-~~-~~~~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~  327 (447)
T PLN02463        272 ----------------------VKSVEEDEKCVIPMGGP-LP-VIPQRVLGIGGTAGMVHPSTGYMVARTLAAAPIVADA  327 (447)
T ss_pred             ----------------------cceeeeeeeeEeeCCCC-CC-CCCCCEEEecchhcCcCCCccccHHHHHHHHHHHHHH
Confidence                                  0011 112223566432 22 2357899999999999999999999999999999999


Q ss_pred             HHHhHhcCC
Q 010200          428 IAEGIAVGA  436 (515)
Q Consensus       428 l~~~~~~~~  436 (515)
                      +.++++.+.
T Consensus       328 ~~~~~~~~~  336 (447)
T PLN02463        328 IVEYLGSSR  336 (447)
T ss_pred             HHHHHhcCC
Confidence            999998654

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=99.88  E-value=2.2e-20  Score=188.18  Aligned_cols=303  Identities=16%  Similarity=0.153  Sum_probs=171.5

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhcc
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHA  136 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~  136 (515)
                      ||+|||||+||+++|+.|++.-  +|++|+|+|+.+....         .  +...++.....-... ...+.+...   
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~--~g~~V~lle~~~~~~~---------~--~tw~~~~~~~~~~~~-~~~~~~v~~---   63 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRAR--PDFRIRVIEAGRTIGG---------N--HTWSFFDSDLSDAQH-AWLADLVQT---   63 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcC--CCCeEEEEeCCCCCCC---------c--ccceecccccchhhh-hhhhhhheE---
Confidence            8999999999999999999830  3899999999874420         0  111111111100000 001111111   


Q ss_pred             ccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcc
Q 010200          137 YFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSAT  216 (515)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~  216 (515)
                      ......++.....  ..+       ...-..+++.+|.+.|.+.+..    .++.+++|+++..                
T Consensus        64 ~W~~~~v~~~~~~--~~l-------~~~Y~~I~r~~f~~~l~~~l~~----~i~~~~~V~~v~~----------------  114 (370)
T TIGR01789        64 DWPGYEVRFPKYR--RKL-------KTAYRSMTSTRFHEGLLQAFPE----GVILGRKAVGLDA----------------  114 (370)
T ss_pred             eCCCCEEECcchh--hhc-------CCCceEEEHHHHHHHHHHhhcc----cEEecCEEEEEeC----------------
Confidence            2333344332111  111       1122579999999999877642    2677889998843                


Q ss_pred             cccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC---ceEEEEe-c--CC--
Q 010200          217 TLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN---YCAWQRF-L--PA--  288 (515)
Q Consensus       217 ~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~--~~--  288 (515)
                            +.+++  .+|.++.||+||+|+|.+|.-....        .-++++...++...+.   ......+ .  .+  
T Consensus       115 ------~~v~l--~dg~~~~A~~VI~A~G~~s~~~~~~--------~~Q~f~G~~~r~~~p~~~~~~~lMD~~~~q~~g~  178 (370)
T TIGR01789       115 ------DGVDL--APGTRINARSVIDCRGFKPSAHLKG--------GFQVFLGREMRLQEPHGLENPIIMDATVDQLAGY  178 (370)
T ss_pred             ------CEEEE--CCCCEEEeeEEEECCCCCCCccccc--------eeeEEEEEEEEEcCCCCCCccEEEeeeccCCCCc
Confidence                  33555  6888999999999999997521111        1123333333333322   1111111 1  12  


Q ss_pred             CcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhc-CCCCCCCCCCCCCcccchhccccCccccccccccC
Q 010200          289 GPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALD-YGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEV  367 (515)
Q Consensus       289 g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  367 (515)
                      .+++++|++++...+-.....+.    ...+.+.+...+..... .+|..                              
T Consensus       179 ~F~Y~lP~~~~~~lvE~T~~s~~----~~l~~~~l~~~l~~~~~~~g~~~------------------------------  224 (370)
T TIGR01789       179 RFVYVLPLGSHDLLIEDTYYADD----PLLDRNALSQRIDQYARANGWQN------------------------------  224 (370)
T ss_pred             eEEEECcCCCCeEEEEEEeccCC----CCCCHHHHHHHHHHHHHHhCCCc------------------------------
Confidence            35667899888866644332221    12455666555555432 01110                              


Q ss_pred             CcceEEeccceeeeccccc-c-ccccc-cCcEEEEcccccccCCccccchhhcHHHHHHHHHHHH-HhHhcCCCcchHHH
Q 010200          368 PPRVVKLASERMVFPLSLK-H-ANNYV-SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIA-EGIAVGADIGEASL  443 (515)
Q Consensus       368 ~~~~~~~~~~~~~~p~~~~-~-~~~~~-~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~-~~~~~~~~~~~~~a  443 (515)
                       .+++..  +...+|+... . ...|. .++|+++|||||.++|.+|+|++.+++||..|++.+. +    +.+.  ..+
T Consensus       225 -~~i~~~--e~g~iPm~~~~~~~~~~~~~~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~la~~~~~~----~~~~--~~~  295 (370)
T TIGR01789       225 -GTPVRH--EQGVLPVLLGGDFSAYQDEVRIVAIAGLRAGLTHPTTGYSLPVAVENADALAAQPDLS----SEQL--AAF  295 (370)
T ss_pred             -eEEEEe--eeeEEeeecCCCcccccccCCceeeeecccccccccccccHHHHHHHHHHHHhccCcC----ccch--hhh
Confidence             011222  2235676442 1 11222 4569999999999999999999999999999999885 2    1122  345


Q ss_pred             HHHHHHHhhHHHHHHHHHHHH
Q 010200          444 LKKYEAERKPANIVMMAVLDG  464 (515)
Q Consensus       444 l~~Y~~~r~~~~~~~~~~s~~  464 (515)
                      +..|...|.++.......-+.
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~  316 (370)
T TIGR01789       296 IDSRARRHWSKTGYYRLLNRM  316 (370)
T ss_pred             hhHHHHHHHHHhHHHHHHHHH
Confidence            788888877776644443333

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=99.85  E-value=1e-18  Score=176.91  Aligned_cols=277  Identities=23%  Similarity=0.282  Sum_probs=175.0

Q ss_pred             cEEEECCCHHHHHHHHHH--hcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           57 DVAVVGGGMVGMALACSL--ASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L--~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      |||||||||||+++|+.|  ++    .|.+|+|+|+.+....         ...+..+++...      ++.++.+... 
T Consensus         1 DviIvGaGpAGlslA~~l~~~~----~g~~Vllid~~~~~~~---------~~~~tW~~~~~~------~~~~~~~v~~-   60 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADAR----PGLSVLLIDPKPKPPW---------PNDRTWCFWEKD------LGPLDSLVSH-   60 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcC----CCCEEEEEcCCccccc---------cCCccccccccc------ccchHHHHhe-
Confidence            899999999999999999  65    4999999999876510         011111221111      1112333332 


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                        .+....++.........        ....+.+++..|.+.|.+.+. .+ ..++.+.+|++++.              
T Consensus        61 --~w~~~~v~~~~~~~~~~--------~~~Y~~i~~~~f~~~l~~~~~-~~-~~~~~~~~V~~i~~--------------  114 (374)
T PF05834_consen   61 --RWSGWRVYFPDGSRILI--------DYPYCMIDRADFYEFLLERAA-AG-GVIRLNARVTSIEE--------------  114 (374)
T ss_pred             --ecCceEEEeCCCceEEc--------ccceEEEEHHHHHHHHHHHhh-hC-CeEEEccEEEEEEe--------------
Confidence              23445555443322111        122357999999999999999 44 35677889999976              


Q ss_pred             cccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC----ceEEEEe-----
Q 010200          215 ATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN----YCAWQRF-----  285 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-----  285 (515)
                            .+..+.+...+|.+++|++||+|+|..+..-+..+        -++++...++.+.+.    ...+..+     
T Consensus       115 ------~~~~~~v~~~~g~~i~a~~VvDa~g~~~~~~~~~~--------~Q~f~G~~v~~~~~~f~~~~~~lMD~r~~~~  180 (374)
T PF05834_consen  115 ------TGDGVLVVLADGRTIRARVVVDARGPSSPKARPLG--------LQHFYGWEVETDEPVFDPDTATLMDFRVPQS  180 (374)
T ss_pred             ------cCceEEEEECCCCEEEeeEEEECCCcccccccccc--------cceeEEEEEeccCCCCCCCceEEEEecccCC
Confidence                  44467888899999999999999997776211111        134444445554431    1222222     


Q ss_pred             -cCCCcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcC-CCCCCCCCCCCCcccchhccccCccccccc
Q 010200          286 -LPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDY-GYGPHPKSISSGSVDMFSWFRGDATLSAKE  363 (515)
Q Consensus       286 -~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (515)
                       .+..++|++|++++...+-..+.....    ..+.+.+.+.+.+.+.. ++...                         
T Consensus       181 ~~~~~F~Y~lP~~~~~alvE~T~fs~~~----~~~~~~~~~~l~~~l~~~g~~~~-------------------------  231 (374)
T PF05834_consen  181 ADGPSFLYVLPFSEDRALVEETSFSPRP----ALPEEELKARLRRYLERLGIDDY-------------------------  231 (374)
T ss_pred             CCCceEEEEEEcCCCeEEEEEEEEcCCC----CCCHHHHHHHHHHHHHHcCCCce-------------------------
Confidence             233678999999988777544433221    14456666666665541 11100                         


Q ss_pred             cccCCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHH
Q 010200          364 CFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAE  430 (515)
Q Consensus       364 ~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~  430 (515)
                            ++  ...+...+|+......+...++++.+|+|++.++|.+|.++..++..|..+|+.|.+
T Consensus       232 ------~i--~~~E~G~IPm~~~~~~~~~~~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia~~l~~  290 (374)
T PF05834_consen  232 ------EI--LEEERGVIPMTTGGFPPRFGQRVIRIGTAGGMVKPSTGYSFARIQRQADAIADALAK  290 (374)
T ss_pred             ------eE--EEeecceeecccCCCccccCCCeeeEEccccCCCCcccHHHHHHHHHHHHHHHHHhh
Confidence                  01  122333478754444444466799999999999999999999999999999999987

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria

Probab=99.81  E-value=9.1e-19  Score=163.34  Aligned_cols=244  Identities=21%  Similarity=0.222  Sum_probs=169.0

Q ss_pred             eeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEee-cCC-ceEEEEecCCCcEEEEecCCCceEEEEEcCCCChHH
Q 010200          237 AKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHN-KEN-YCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASD  314 (515)
Q Consensus       237 ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~  314 (515)
                      |+++|.|||..|.+|+.+. .. ......+++...+... .+. ..-+..+.+.+++.+++++.+..++.+-++.+....
T Consensus         2 A~LtivaDG~~S~fRk~l~-~~-~~~v~S~fvGl~l~~~~lp~~~~ghvil~~~~pil~YqI~~~etR~Lvdvp~~k~P~   79 (276)
T PF08491_consen    2 APLTIVADGCFSKFRKELS-DN-KPQVRSYFVGLILKDAPLPKPNHGHVILGKPGPILLYQISSNETRVLVDVPGPKLPS   79 (276)
T ss_pred             CCEEEEecCCchHHHHhhc-CC-CCceeeeEEEEEEcCCCCCCCCceEEEEcCCCcEEEEEcCCCceEEEEEeCCCccCC
Confidence            6899999999999999986 21 2222333333333222 222 334445567899999999999999999887663321


Q ss_pred             hhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCcceEEeccceeeeccccccccccccC
Q 010200          315 CKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSK  394 (515)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~  394 (515)
                         .+..++.+.+++...+...+.       ..+.+...+...                   .....|....+.......
T Consensus        80 ---~~~g~l~~yl~~~v~P~LP~~-------lr~~f~~al~~~-------------------rirsMPn~~lp~~~~~~~  130 (276)
T PF08491_consen   80 ---VSNGELKEYLREVVAPQLPEE-------LRPSFEKALEDG-------------------RIRSMPNSFLPASPNWKP  130 (276)
T ss_pred             ---ccchHHHHHHHHHHHhhchHH-------HHHHHHHHhccC-------------------CcceecccccCCCCCCCC
Confidence               223344444444222111111       111111111110                   111244444444444557


Q ss_pred             cEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCC
Q 010200          395 RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFG  474 (515)
Q Consensus       395 ~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~  474 (515)
                      +++++|||+++.+|.+|+||+.|+.||..|++.|.....=.++....+++++|+.+|++....+.-.+..++.+|..++.
T Consensus       131 G~vllGDA~nmrHPLTGgGMTVAl~Dv~lL~~lL~~~~dl~d~~~v~~~l~~f~~~Rk~~~s~iNiLA~aLY~lF~a~~~  210 (276)
T PF08491_consen  131 GVVLLGDAANMRHPLTGGGMTVALNDVVLLRDLLSPIPDLSDTKAVLEALKKFHWKRKPLSSVINILAQALYSLFAADDD  210 (276)
T ss_pred             CEEEEehhhcCcCCccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCH
Confidence            89999999999999999999999999999999999872111111236799999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhcccChhHHHHHHHHhhcCCCCCCCC
Q 010200          475 PLNILRAAAFHGAQYISPLKRNIISYASGEQRLPLPL  511 (515)
Q Consensus       475 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  511 (515)
                      .+..+|+..|..+..=+......+...+|+...|..+
T Consensus       211 ~l~~Lr~gcf~Yf~~GG~~~~gpv~LLsgl~p~P~~L  247 (276)
T PF08491_consen  211 YLKALRQGCFKYFQLGGECVSGPVALLSGLNPRPLVL  247 (276)
T ss_pred             HHHHHHHHHHHHHHcCCCCCcchHHHhccCCCCcHHH
Confidence            9999999999999887778899999999999998643

SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=99.80  E-value=2.5e-17  Score=157.66  Aligned_cols=371  Identities=14%  Similarity=0.111  Sum_probs=224.6

Q ss_pred             CCCCCccEEEECCCHHHHHHHHHHhcCCCC--CCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCch
Q 010200           51 NNDDQYDVAVVGGGMVGMALACSLASMPLT--KHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQ  128 (515)
Q Consensus        51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~--~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~  128 (515)
                      .....+||+|||||||||++|+.|+|....  ..++|+|+||...++         .....|..+.|.+++.|  +--|.
T Consensus        72 R~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~G---------ghtlSGaviep~aldEL--~P~wk  140 (621)
T KOG2415|consen   72 RESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVG---------GHTLSGAVIEPGALDEL--LPDWK  140 (621)
T ss_pred             hhhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccC---------Cceecceeeccchhhhh--Ccchh
Confidence            345679999999999999999999874111  358999999999884         23344666777665533  12222


Q ss_pred             hhhhhhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcc
Q 010200          129 YVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSIS  208 (515)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~  208 (515)
                      +.-.....++..-.++.-.+...+..+....-.....|.++-..++++|-+.+++.| ++|+.+..+.++.++++.++++
T Consensus       141 e~~apl~t~vT~d~~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~G-vEiyPg~aaSevly~edgsVkG  219 (621)
T KOG2415|consen  141 EDGAPLNTPVTSDKFKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELG-VEIYPGFAASEVLYDEDGSVKG  219 (621)
T ss_pred             hcCCcccccccccceeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhC-ceeccccchhheeEcCCCcEee
Confidence            222222223333333333344444444321112233589999999999999999999 9999999999999999999999


Q ss_pred             cCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhc----CCc--cccccC--CceEEEEEEEeecCCce
Q 010200          209 VDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELA----GFK--TTGWSY--SQNAIICTVEHNKENYC  280 (515)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l----~~~--~~~~~~--~~~~~~~~~~~~~~~~~  280 (515)
                      +...+-|   +.+.+..+-.|+.|-+++++..|.|+|.++.+.+++    ++.  .+...|  +..-+|-.-+.......
T Consensus       220 iaT~D~G---I~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n~e~qtYglGlKEvWei~~~~~~pG~  296 (621)
T KOG2415|consen  220 IATNDVG---ISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLRENCEPQTYGLGLKEVWEIDPENHNPGE  296 (621)
T ss_pred             Eeecccc---ccCCCCccccccccceecceeEEEeccccchhHHHHHHHhCcccCCCcceeccccceeEecChhhcCCcc
Confidence            8887777   556677888899999999999999999999988775    222  122222  23333333332222223


Q ss_pred             EEEEec------CCCcEEEEecCCCceEEEEEcCCCChHHhhcCCH-HHHHHHHHHhhcCCCCCCCCCCCCCcccchhcc
Q 010200          281 AWQRFL------PAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNE-DDFVKILNHALDYGYGPHPKSISSGSVDMFSWF  353 (515)
Q Consensus       281 ~~~~~~------~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (515)
                      ..+.+.      .-|-.+++.+.+....+.+.+.-+-...  .+++ .+|.+         |..+|.         ++..
T Consensus       297 v~HT~GwPl~~~tYGGsFlYh~~d~~VavGlVVgLdY~NP--~lsP~~EFQk---------~K~hP~---------i~~v  356 (621)
T KOG2415|consen  297 VAHTLGWPLDNDTYGGSFLYHFNDPLVAVGLVVGLDYKNP--YLSPYKEFQK---------MKHHPS---------ISKV  356 (621)
T ss_pred             eeeeccCcccCCccCceeEEEcCCCeEEEEEEEEecCCCC--CCCHHHHHHH---------hhcCcc---------hhhh
Confidence            322221      1133455666777766665543222110  1122 22221         111111         1111


Q ss_pred             ccCccccccccccCCcceEEeccceeeeccccc---cccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHH
Q 010200          354 RGDATLSAKECFEVPPRVVKLASERMVFPLSLK---HANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAE  430 (515)
Q Consensus       354 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~---~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~  430 (515)
                      +.....            +...    +..+...   ..+...-++-+|||=+|++++----.|...||.++...|+.+-+
T Consensus       357 leGgk~------------i~Yg----ARaLNEGGfQsiPkl~FPGG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~  420 (621)
T KOG2415|consen  357 LEGGKR------------IAYG----ARALNEGGFQSIPKLVFPGGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFE  420 (621)
T ss_pred             hcCcce------------eeeh----hhhhccCCcccCcccccCCceEeecccccccccccccchhhhhcchhHHHHHHH
Confidence            111100            0000    0011111   12334456779999999999999999999999999999999999


Q ss_pred             hHhcCCCcchH-HHHHHHHHHhh-HHHHHHHHHHHHHHHhhcCC
Q 010200          431 GIAVGADIGEA-SLLKKYEAERK-PANIVMMAVLDGFQKAYSVD  472 (515)
Q Consensus       431 ~~~~~~~~~~~-~al~~Y~~~r~-~~~~~~~~~s~~~~~~~~~~  472 (515)
                      .++...+.... --+..|++.-+ ..+.+.+-..+.+...|+..
T Consensus       421 ai~~~~~~k~~~~~~~~Ye~nlkds~V~KeLysvRNirPsf~~~  464 (621)
T KOG2415|consen  421 AIKGLPQSKMAGLDPTTYEENLKDSYVWKELYSVRNIRPSFHGK  464 (621)
T ss_pred             HHhcCccccccccChhhHHHhhhhhHHHHHHHHhhccCcccccc
Confidence            88655311000 11457877644 44566666666666666644

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.59  E-value=6.9e-15  Score=142.43  Aligned_cols=163  Identities=21%  Similarity=0.275  Sum_probs=104.8

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeC-HhHHHHHHHcCCchhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVT-PATISFFKEIGAWQYVQQ  132 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~l~~lgl~~~~~~  132 (515)
                      +.+||+|||||||||++|+.++++    |.+|+|||+.+.++.+--..+++    ++-..+ ....+++...+-...+..
T Consensus         2 ~~~dviIIGgGpAGlMaA~~aa~~----G~~V~lid~~~k~GrKil~sGgG----rCN~Tn~~~~~~~ls~~p~~~~fl~   73 (408)
T COG2081           2 ERFDVIIIGGGPAGLMAAISAAKA----GRRVLLIDKGPKLGRKILMSGGG----RCNFTNSEAPDEFLSRNPGNGHFLK   73 (408)
T ss_pred             CcceEEEECCCHHHHHHHHHHhhc----CCEEEEEecCccccceeEecCCC----CccccccccHHHHHHhCCCcchHHH
Confidence            468999999999999999999996    99999999999987654321211    111111 112334444431111111


Q ss_pred             hhccccce---EEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCccc
Q 010200          133 HRHAYFDK---MQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISV  209 (515)
Q Consensus       133 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~  209 (515)
                      .....+..   +.++...+.....    ...+..+.....-..+.++|+.++++.| |+|+.+++|.+++.         
T Consensus        74 sal~~ft~~d~i~~~e~~Gi~~~e----~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~g-V~i~~~~~v~~v~~---------  139 (408)
T COG2081          74 SALARFTPEDFIDWVEGLGIALKE----EDLGRMFPDSDKASPIVDALLKELEALG-VTIRTRSRVSSVEK---------  139 (408)
T ss_pred             HHHHhCCHHHHHHHHHhcCCeeEE----ccCceecCCccchHHHHHHHHHHHHHcC-cEEEecceEEeEEe---------
Confidence            11111111   1111111111111    1111221122456789999999999998 99999999999987         


Q ss_pred             CCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200          210 DSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR  249 (515)
Q Consensus       210 ~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~  249 (515)
                                 .+....+.+.+|+++.||.+|.|+|..|.
T Consensus       140 -----------~~~~f~l~t~~g~~i~~d~lilAtGG~S~  168 (408)
T COG2081         140 -----------DDSGFRLDTSSGETVKCDSLILATGGKSW  168 (408)
T ss_pred             -----------cCceEEEEcCCCCEEEccEEEEecCCcCC
Confidence                       44678999999989999999999998775

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.55  E-value=8.4e-14  Score=132.80  Aligned_cols=147  Identities=20%  Similarity=0.196  Sum_probs=99.1

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      ..+||+||||||||+++|+.|++.    |++|+|+||...++...+.  ++ .......+.....++|+++|+.      
T Consensus        24 ~~~DVvIVGgGpAGl~AA~~la~~----G~~V~liEk~~~~Ggg~~~--gg-~~~~~~~v~~~~~~~l~~~gv~------   90 (257)
T PRK04176         24 LEVDVAIVGAGPSGLTAAYYLAKA----GLKVAVFERKLSFGGGMWG--GG-MLFNKIVVQEEADEILDEFGIR------   90 (257)
T ss_pred             ccCCEEEECccHHHHHHHHHHHhC----CCeEEEEecCCCCCCcccc--Cc-cccccccchHHHHHHHHHCCCC------
Confidence            458999999999999999999996    9999999999877432210  00 0001123344455566665541      


Q ss_pred             hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (515)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~  213 (515)
                          +..     .               ....+.+++..+...|.+.+.+.| ++++.+++|+++..++.          
T Consensus        91 ----~~~-----~---------------~~g~~~vd~~~l~~~L~~~A~~~G-v~I~~~t~V~dl~~~~~----------  135 (257)
T PRK04176         91 ----YKE-----V---------------EDGLYVADSVEAAAKLAAAAIDAG-AKIFNGVSVEDVILRED----------  135 (257)
T ss_pred             ----cee-----e---------------cCcceeccHHHHHHHHHHHHHHcC-CEEEcCceeceeeEeCC----------
Confidence                100     0               001245788999999999999988 99999999999975100          


Q ss_pred             CcccccccCCeeEEEc---------CCCcEEEeeEEEEecCCCchhhhhc
Q 010200          214 SATTLFTKGHLAKLDL---------SDGTSLYAKLVVGADGGKSRVRELA  254 (515)
Q Consensus       214 ~~~~~~~~~~~~~v~~---------~~g~~~~ad~vV~AdG~~S~vr~~l  254 (515)
                       +     ...++.+..         .+..++.|++||+|+|.+|.+.+.+
T Consensus       136 -g-----~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l  179 (257)
T PRK04176        136 -P-----RVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVL  179 (257)
T ss_pred             -C-----cEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHH
Confidence             0     001122211         1224799999999999999999887

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.54  E-value=1.2e-13  Score=131.18  Aligned_cols=148  Identities=19%  Similarity=0.189  Sum_probs=97.8

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      ..+||+||||||+||++|+.|++.    |++|+|+||...++...|.  ++ .......+.....++++++|+.      
T Consensus        20 ~~~DVvIVGgGpAGL~aA~~la~~----G~~V~vlEk~~~~Ggg~~~--gg-~~~~~~~~~~~~~~~l~~~gi~------   86 (254)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAKN----GLKVCVLERSLAFGGGSWG--GG-MLFSKIVVEKPAHEILDEFGIR------   86 (254)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHC----CCcEEEEecCCCCCccccC--CC-cceecccccchHHHHHHHCCCC------
Confidence            368999999999999999999996    9999999999987543321  00 0001112233344455554431      


Q ss_pred             hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (515)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~  213 (515)
                          +     ...               ....+..++..+...|.+++.+.| ++++.+++|.++..+++.         
T Consensus        87 ----~-----~~~---------------~~g~~~~~~~el~~~L~~~a~e~G-V~I~~~t~V~dli~~~~~---------  132 (254)
T TIGR00292        87 ----Y-----EDE---------------GDGYVVADSAEFISTLASKALQAG-AKIFNGTSVEDLITRDDT---------  132 (254)
T ss_pred             ----e-----eec---------------cCceEEeeHHHHHHHHHHHHHHcC-CEEECCcEEEEEEEeCCC---------
Confidence                0     000               001134578899999999999998 999999999999761110         


Q ss_pred             CcccccccCCeeEEEcC---------CCcEEEeeEEEEecCCCchhhhhc
Q 010200          214 SATTLFTKGHLAKLDLS---------DGTSLYAKLVVGADGGKSRVRELA  254 (515)
Q Consensus       214 ~~~~~~~~~~~~~v~~~---------~g~~~~ad~vV~AdG~~S~vr~~l  254 (515)
                       .     ...++.+...         +..++.|++||+|+|..|.+.+.+
T Consensus       133 -~-----~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l  176 (254)
T TIGR00292       133 -V-----GVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVC  176 (254)
T ss_pred             -C-----ceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHH
Confidence             0     0112222110         234799999999999999988876

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.50  E-value=5e-12  Score=128.90  Aligned_cols=72  Identities=14%  Similarity=0.122  Sum_probs=57.3

Q ss_pred             EEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecC
Q 010200          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADG  245 (515)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG  245 (515)
                      ..++...+...|.+.+.+.| ++++.+++|++++.                    ++..+.|.+.++ ++.+|.||.|+|
T Consensus       140 g~i~p~~~~~~l~~~~~~~g-~~~~~~~~V~~i~~--------------------~~~~~~v~~~~~-~i~a~~vV~aaG  197 (380)
T TIGR01377       140 GVLYAEKALRALQELAEAHG-ATVRDGTKVVEIEP--------------------TELLVTVKTTKG-SYQANKLVVTAG  197 (380)
T ss_pred             cEEcHHHHHHHHHHHHHHcC-CEEECCCeEEEEEe--------------------cCCeEEEEeCCC-EEEeCEEEEecC
Confidence            45678899999999998888 99999999999976                    334567777666 699999999999


Q ss_pred             CC-chhhhhcCCccc
Q 010200          246 GK-SRVRELAGFKTT  259 (515)
Q Consensus       246 ~~-S~vr~~l~~~~~  259 (515)
                      .+ +.+++.++...+
T Consensus       198 ~~~~~l~~~~g~~~~  212 (380)
T TIGR01377       198 AWTSKLLSPLGIEIP  212 (380)
T ss_pred             cchHHHhhhcccCCC
Confidence            87 567777765443

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.45  E-value=2.3e-12  Score=114.28  Aligned_cols=146  Identities=20%  Similarity=0.185  Sum_probs=106.3

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      ..||+||||||+||++|+.|++.    |++|+||||+-.++...|   .+..-...+.+...+.++|+++|+..+-..  
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~----g~kV~i~E~~ls~GGG~w---~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e--  100 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKA----GLKVAIFERKLSFGGGIW---GGGMLFNKIVVREEADEILDEFGIRYEEEE--  100 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhC----CceEEEEEeecccCCccc---ccccccceeeecchHHHHHHHhCCcceecC--
Confidence            47999999999999999999996    999999999999865554   222222345677778889998887211111  


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                                                  ..-+..+...+...|..++.+.| ++|+.++.|.++..+++.          
T Consensus       101 ----------------------------~g~~v~ds~e~~skl~~~a~~aG-aki~n~~~veDvi~r~~~----------  141 (262)
T COG1635         101 ----------------------------DGYYVADSAEFASKLAARALDAG-AKIFNGVSVEDVIVRDDP----------  141 (262)
T ss_pred             ----------------------------CceEEecHHHHHHHHHHHHHhcC-ceeeecceEEEEEEecCC----------
Confidence                                        11255677888899999999999 999999999999872110          


Q ss_pred             cccccccCCeeEEEcC---------CCcEEEeeEEEEecCCCchhhhhc
Q 010200          215 ATTLFTKGHLAKLDLS---------DGTSLYAKLVVGADGGKSRVRELA  254 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~---------~g~~~~ad~vV~AdG~~S~vr~~l  254 (515)
                            .-.++.+...         |--++++++||.|+|....+-+.+
T Consensus       142 ------rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~  184 (262)
T COG1635         142 ------RVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFL  184 (262)
T ss_pred             ------ceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHH
Confidence                  1122333321         223799999999999998886665

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=99.43  E-value=1.3e-12  Score=116.86  Aligned_cols=147  Identities=21%  Similarity=0.214  Sum_probs=96.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      ..+||+||||||+||++|+.|++.    |++|+|||++..++..-|   .+......+.+...+..+|+++|+.-.  + 
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~----g~kV~v~E~~~~~GGg~~---~Gg~lf~~iVVq~~a~~iL~elgi~y~--~-   85 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKA----GLKVAVIERKLSPGGGMW---GGGMLFNKIVVQEEADEILDELGIPYE--E-   85 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHH----TS-EEEEESSSS-BTTTT---S-CTT---EEEETTTHHHHHHHT---E--E-
T ss_pred             ccCCEEEECCChhHHHHHHHHHHC----CCeEEEEecCCCCCcccc---ccccccchhhhhhhHHHHHHhCCceeE--E-
Confidence            358999999999999999999996    999999999998865544   122223356778888899998876110  0 


Q ss_pred             hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (515)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~  213 (515)
                                                 .....|..+...+...|..++.+.| ++|+-.+.|.++...         ++ 
T Consensus        86 ---------------------------~~~g~~v~d~~~~~s~L~s~a~~aG-akifn~~~vEDvi~r---------~~-  127 (230)
T PF01946_consen   86 ---------------------------YGDGYYVADSVEFTSTLASKAIDAG-AKIFNLTSVEDVIVR---------ED-  127 (230)
T ss_dssp             ----------------------------SSEEEES-HHHHHHHHHHHHHTTT-EEEEETEEEEEEEEE---------CS-
T ss_pred             ---------------------------eCCeEEEEcHHHHHHHHHHHHhcCC-CEEEeeeeeeeeEEE---------cC-
Confidence                                       0112256778889999999998887 999999999998771         10 


Q ss_pred             CcccccccCCeeEEEcC----CC-----cEEEeeEEEEecCCCchhhhhc
Q 010200          214 SATTLFTKGHLAKLDLS----DG-----TSLYAKLVVGADGGKSRVRELA  254 (515)
Q Consensus       214 ~~~~~~~~~~~~~v~~~----~g-----~~~~ad~vV~AdG~~S~vr~~l  254 (515)
                       +     .-.++.+...    .|     -++++++||.|+|..+.+-+.+
T Consensus       128 -~-----rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v~~~~  171 (230)
T PF01946_consen  128 -D-----RVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEVVRVL  171 (230)
T ss_dssp             -C-----EEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSSTSHH
T ss_pred             -C-----eEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHHHHHH
Confidence             0     1223333331    22     3799999999999988765544

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.42  E-value=1.1e-12  Score=132.73  Aligned_cols=152  Identities=19%  Similarity=0.213  Sum_probs=81.8

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCC-------CCCCCCCCCCCcEEEeC-----HhHHHHHHH
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS-------NFIKKEDPPDPRVSTVT-----PATISFFKE  123 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~-------~~~~~~~~~~~~~~~l~-----~~~~~~l~~  123 (515)
                      |||+|||||||||++|+.|++.    |.+|+|+||++.++.+       .|+..+.......+.-.     ......|+.
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~----g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~   76 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEK----GARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKR   76 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHT----T--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhC----CCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhc
Confidence            7999999999999999999996    9999999999988643       23222211111111110     112234444


Q ss_pred             cCCch---hhhhhhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEe
Q 010200          124 IGAWQ---YVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMAL  200 (515)
Q Consensus       124 lgl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~  200 (515)
                      ++..+   -+.+.+.      .......  ...||          ..-...++.+.|++.+++.| ++|+++++|.+++.
T Consensus        77 f~~~d~~~ff~~~Gv------~~~~~~~--gr~fP----------~s~~a~~Vv~~L~~~l~~~g-v~i~~~~~V~~i~~  137 (409)
T PF03486_consen   77 FSPEDLIAFFEELGV------PTKIEED--GRVFP----------KSDKASSVVDALLEELKRLG-VEIHFNTRVKSIEK  137 (409)
T ss_dssp             S-HHHHHHHHHHTT--------EEE-ST--TEEEE----------TT--HHHHHHHHHHHHHHHT--EEE-S--EEEEEE
T ss_pred             CCHHHHHHHHHhcCC------eEEEcCC--CEECC----------CCCcHHHHHHHHHHHHHHcC-CEEEeCCEeeeeee
Confidence            43211   1111111      1111100  11111          12345789999999999998 99999999999986


Q ss_pred             CCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200          201 LPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR  249 (515)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~  249 (515)
                                         +++..+.|.++++.++.||.||.|+|..|.
T Consensus       138 -------------------~~~~~f~v~~~~~~~~~a~~vILAtGG~S~  167 (409)
T PF03486_consen  138 -------------------KEDGVFGVKTKNGGEYEADAVILATGGKSY  167 (409)
T ss_dssp             -------------------ETTEEEEEEETTTEEEEESEEEE----SSS
T ss_pred             -------------------cCCceeEeeccCcccccCCEEEEecCCCCc
Confidence                               123447888877778999999999998774

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=99.38  E-value=3.3e-11  Score=123.97  Aligned_cols=115  Identities=17%  Similarity=0.055  Sum_probs=68.5

Q ss_pred             EechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCC
Q 010200          167 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGG  246 (515)
Q Consensus       167 ~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~  246 (515)
                      .++...+...|.+.+.+.| ++++.+++|++++..                  +++..+.+.+.+| ++.++.||.|.|+
T Consensus       179 ~v~p~~l~~~l~~~a~~~G-v~~~~~~~V~~i~~~------------------~~~~~~~v~t~~g-~i~a~~vVvaagg  238 (407)
T TIGR01373       179 TARHDAVAWGYARGADRRG-VDIIQNCEVTGFIRR------------------DGGRVIGVETTRG-FIGAKKVGVAVAG  238 (407)
T ss_pred             cCCHHHHHHHHHHHHHHCC-CEEEeCCEEEEEEEc------------------CCCcEEEEEeCCc-eEECCEEEECCCh
Confidence            3556778888999999988 999999999999640                  0123345666677 5899877666666


Q ss_pred             Cc-hhhhhcCCccccccCCceEEEEEEEeecCCceEEEEecCCCcEEEEecCCCceEEE
Q 010200          247 KS-RVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNFSNIV  304 (515)
Q Consensus       247 ~S-~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~  304 (515)
                      ++ .+++.++.......+....+.  .. ............+...+++.|..++...+.
T Consensus       239 ~~~~l~~~~g~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~y~~p~~~g~~~ig  294 (407)
T TIGR01373       239 HSSVVAAMAGFRLPIESHPLQALV--SE-PLKPIIDTVVMSNAVHFYVSQSDKGELVIG  294 (407)
T ss_pred             hhHHHHHHcCCCCCcCcccceEEE--ec-CCCCCcCCeEEeCCCceEEEEcCCceEEEe
Confidence            55 677766665443344332221  11 111111111122445677888777654443

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.37  E-value=6.3e-11  Score=124.84  Aligned_cols=113  Identities=17%  Similarity=0.082  Sum_probs=69.4

Q ss_pred             EechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCC----cEEEeeEEEE
Q 010200          167 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG----TSLYAKLVVG  242 (515)
Q Consensus       167 ~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g----~~~~ad~vV~  242 (515)
                      .++...+...|.+.+.+.| ++++.+++|++++.                    +++.+.+.+.++    .++.+++||.
T Consensus       151 ~vd~~rl~~~l~~~a~~~G-a~i~~~~~V~~i~~--------------------~~~~~~v~~~~~~g~~~~i~a~~VVn  209 (502)
T PRK13369        151 WVDDARLVVLNALDAAERG-ATILTRTRCVSARR--------------------EGGLWRVETRDADGETRTVRARALVN  209 (502)
T ss_pred             eecHHHHHHHHHHHHHHCC-CEEecCcEEEEEEE--------------------cCCEEEEEEEeCCCCEEEEEecEEEE
Confidence            4677889999999999998 99999999999976                    334455655443    2699999999


Q ss_pred             ecCCCch-hhhhc-CCccccccCCceEEEEEEEeecCCceEEEEecCCCc-EEEEecCCCc
Q 010200          243 ADGGKSR-VRELA-GFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGP-IALLPIGDNF  300 (515)
Q Consensus       243 AdG~~S~-vr~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~p~~~~~  300 (515)
                      |+|.|+. +.+.+ +......-....+....++........+....+++. ++++|..++.
T Consensus       210 AaG~wa~~l~~~~~g~~~~~~v~p~kG~~lv~~~~~~~~~~~~~~~~dgr~~~i~P~~~~~  270 (502)
T PRK13369        210 AAGPWVTDVIHRVAGSNSSRNVRLVKGSHIVVPKFWDGAQAYLFQNPDKRVIFANPYEGDF  270 (502)
T ss_pred             CCCccHHHHHhhccCCCCCcceEEeeEEEEEeCCccCCCceEEEeCCCCeEEEEEEecCCE
Confidence            9999985 44433 432211122223333333322222222222234444 6788886554

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.36  E-value=2.9e-11  Score=127.30  Aligned_cols=62  Identities=19%  Similarity=0.193  Sum_probs=48.8

Q ss_pred             EechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCC---Cc--EEEeeEEE
Q 010200          167 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD---GT--SLYAKLVV  241 (515)
Q Consensus       167 ~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---g~--~~~ad~vV  241 (515)
                      .++...+...|.+.+.+.| ++++.+++|+++..                    +++.+.+.+.+   |+  ++.++.||
T Consensus       151 ~vd~~rl~~~l~~~A~~~G-a~i~~~~~V~~i~~--------------------~~~~~~v~~~~~~~g~~~~i~a~~VV  209 (508)
T PRK12266        151 WVDDARLVVLNARDAAERG-AEILTRTRVVSARR--------------------ENGLWHVTLEDTATGKRYTVRARALV  209 (508)
T ss_pred             ccCHHHHHHHHHHHHHHcC-CEEEcCcEEEEEEE--------------------eCCEEEEEEEEcCCCCEEEEEcCEEE
Confidence            3567788888888898888 99999999999976                    23445555543   43  79999999


Q ss_pred             EecCCCch
Q 010200          242 GADGGKSR  249 (515)
Q Consensus       242 ~AdG~~S~  249 (515)
                      .|+|.|+.
T Consensus       210 nAaG~wa~  217 (508)
T PRK12266        210 NAAGPWVK  217 (508)
T ss_pred             ECCCccHH
Confidence            99999984

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.36  E-value=1.7e-10  Score=117.39  Aligned_cols=61  Identities=15%  Similarity=0.238  Sum_probs=50.8

Q ss_pred             EechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCC
Q 010200          167 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGG  246 (515)
Q Consensus       167 ~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~  246 (515)
                      .++...+...+.+.+.+.| ++++++++|++++.                    .++.+.+.+++| ++.+|.||.|+|.
T Consensus       145 ~v~p~~~~~~~~~~~~~~g-v~i~~~~~v~~i~~--------------------~~~~~~v~~~~g-~~~a~~vV~A~G~  202 (376)
T PRK11259        145 FLRPELAIKAHLRLAREAG-AELLFNEPVTAIEA--------------------DGDGVTVTTADG-TYEAKKLVVSAGA  202 (376)
T ss_pred             EEcHHHHHHHHHHHHHHCC-CEEECCCEEEEEEe--------------------eCCeEEEEeCCC-EEEeeEEEEecCc
Confidence            4667888888888888887 99999999999976                    334577887777 6999999999999


Q ss_pred             Cch
Q 010200          247 KSR  249 (515)
Q Consensus       247 ~S~  249 (515)
                      ++.
T Consensus       203 ~~~  205 (376)
T PRK11259        203 WVK  205 (376)
T ss_pred             chh
Confidence            865

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.36  E-value=4.5e-11  Score=122.35  Aligned_cols=70  Identities=13%  Similarity=0.238  Sum_probs=56.9

Q ss_pred             EEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecC
Q 010200          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADG  245 (515)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG  245 (515)
                      ..++...+.+.|.+.+++.| ++++++++|.+++.                    .++.+.|.+.+| ++.+|.||.|+|
T Consensus       144 g~vd~~~l~~aL~~~~~~~G-v~i~~~~~V~~i~~--------------------~~~~~~V~~~~g-~i~ad~vV~A~G  201 (393)
T PRK11728        144 GIVDYRAVAEAMAELIQARG-GEIRLGAEVTALDE--------------------HANGVVVRTTQG-EYEARTLINCAG  201 (393)
T ss_pred             eEECHHHHHHHHHHHHHhCC-CEEEcCCEEEEEEe--------------------cCCeEEEEECCC-EEEeCEEEECCC
Confidence            45778999999999999988 99999999999975                    334467777666 699999999999


Q ss_pred             CCch-hhhhcCCc
Q 010200          246 GKSR-VRELAGFK  257 (515)
Q Consensus       246 ~~S~-vr~~l~~~  257 (515)
                      .+|. +.+.++..
T Consensus       202 ~~s~~l~~~~g~~  214 (393)
T PRK11728        202 LMSDRLAKMAGLE  214 (393)
T ss_pred             cchHHHHHHhCCC
Confidence            9984 56666654

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=99.35  E-value=1.6e-10  Score=119.05  Aligned_cols=67  Identities=19%  Similarity=0.172  Sum_probs=50.2

Q ss_pred             echHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCC-----cEEEeeEEEE
Q 010200          168 VENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG-----TSLYAKLVVG  242 (515)
Q Consensus       168 i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-----~~~~ad~vV~  242 (515)
                      ++...+...|.+.+.+.| ++++++++|++++.                    .+..+++.+.++     .++.+|.||.
T Consensus       194 ~~~~~~~~~l~~~a~~~G-~~i~~~~~V~~i~~--------------------~~~~~~v~~~~~~~~~~~~i~a~~vV~  252 (410)
T PRK12409        194 GDIHKFTTGLAAACARLG-VQFRYGQEVTSIKT--------------------DGGGVVLTVQPSAEHPSRTLEFDGVVV  252 (410)
T ss_pred             cCHHHHHHHHHHHHHhCC-CEEEcCCEEEEEEE--------------------eCCEEEEEEEcCCCCccceEecCEEEE
Confidence            455688889999999998 99999999999975                    234455544332     3699999999


Q ss_pred             ecCCCch-hhhhcC
Q 010200          243 ADGGKSR-VRELAG  255 (515)
Q Consensus       243 AdG~~S~-vr~~l~  255 (515)
                      |+|.++. +.+.++
T Consensus       253 a~G~~s~~l~~~~~  266 (410)
T PRK12409        253 CAGVGSRALAAMLG  266 (410)
T ss_pred             CCCcChHHHHHHhC
Confidence            9999985 333344

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.34  E-value=5.7e-12  Score=127.01  Aligned_cols=64  Identities=27%  Similarity=0.274  Sum_probs=54.0

Q ss_pred             eEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeE-EEcCCCcEEEeeEEEEe
Q 010200          165 GCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAK-LDLSDGTSLYAKLVVGA  243 (515)
Q Consensus       165 ~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~g~~~~ad~vV~A  243 (515)
                      +..++...+.+.|.+.+++.| ++|+.+++|+++..                    ++..++ |.+++|+ +.+|.||.|
T Consensus       141 ~g~i~~~~l~~~l~~~~~~~G-v~i~~~~~V~~i~~--------------------~~~~v~gv~~~~g~-i~ad~vV~a  198 (358)
T PF01266_consen  141 GGVIDPRRLIQALAAEAQRAG-VEIRTGTEVTSIDV--------------------DGGRVTGVRTSDGE-IRADRVVLA  198 (358)
T ss_dssp             EEEEEHHHHHHHHHHHHHHTT--EEEESEEEEEEEE--------------------ETTEEEEEEETTEE-EEECEEEE-
T ss_pred             cccccccchhhhhHHHHHHhh-hhccccccccchhh--------------------cccccccccccccc-cccceeEec
Confidence            456889999999999999998 99999999999987                    556677 9999997 999999999


Q ss_pred             cCCCchh
Q 010200          244 DGGKSRV  250 (515)
Q Consensus       244 dG~~S~v  250 (515)
                      +|.++..
T Consensus       199 ~G~~s~~  205 (358)
T PF01266_consen  199 AGAWSPQ  205 (358)
T ss_dssp             -GGGHHH
T ss_pred             cccccee
Confidence            9998864

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=99.31  E-value=1.5e-10  Score=126.23  Aligned_cols=61  Identities=20%  Similarity=0.193  Sum_probs=52.4

Q ss_pred             EechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCC
Q 010200          167 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGG  246 (515)
Q Consensus       167 ~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~  246 (515)
                      .++...+...|.+.+.+ | ++++++++|++++.                    .++.++|.+++|..+.+|.||.|+|.
T Consensus       404 ~v~p~~l~~aL~~~a~~-G-v~i~~~~~V~~i~~--------------------~~~~~~v~t~~g~~~~ad~VV~A~G~  461 (662)
T PRK01747        404 WLCPAELCRALLALAGQ-Q-LTIHFGHEVARLER--------------------EDDGWQLDFAGGTLASAPVVVLANGH  461 (662)
T ss_pred             eeCHHHHHHHHHHhccc-C-cEEEeCCEeeEEEE--------------------eCCEEEEEECCCcEEECCEEEECCCC
Confidence            46788999999999988 7 99999999999976                    33557788888877889999999999


Q ss_pred             Cch
Q 010200          247 KSR  249 (515)
Q Consensus       247 ~S~  249 (515)
                      ++.
T Consensus       462 ~s~  464 (662)
T PRK01747        462 DAA  464 (662)
T ss_pred             Ccc
Confidence            985

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=99.28  E-value=2.7e-10  Score=117.61  Aligned_cols=61  Identities=15%  Similarity=0.163  Sum_probs=48.4

Q ss_pred             EechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCee-EEEcCCCcEEEeeEEEEecC
Q 010200          167 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLA-KLDLSDGTSLYAKLVVGADG  245 (515)
Q Consensus       167 ~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~g~~~~ad~vV~AdG  245 (515)
                      .++...+...|.+.+.+.| ++|+++++|++++.                    .++.+ .+..+++ ++.+|.||.|+|
T Consensus       197 ~~~p~~~~~~l~~~~~~~G-~~i~~~~~V~~i~~--------------------~~~~~~~v~t~~~-~~~a~~VV~a~G  254 (416)
T PRK00711        197 TGDCQLFTQRLAAMAEQLG-VKFRFNTPVDGLLV--------------------EGGRITGVQTGGG-VITADAYVVALG  254 (416)
T ss_pred             cCCHHHHHHHHHHHHHHCC-CEEEcCCEEEEEEe--------------------cCCEEEEEEeCCc-EEeCCEEEECCC
Confidence            3456788899999999888 99999999999975                    22333 4555544 699999999999


Q ss_pred             CCch
Q 010200          246 GKSR  249 (515)
Q Consensus       246 ~~S~  249 (515)
                      .++.
T Consensus       255 ~~~~  258 (416)
T PRK00711        255 SYST  258 (416)
T ss_pred             cchH
Confidence            9985

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.23  E-value=1e-10  Score=117.42  Aligned_cols=181  Identities=20%  Similarity=0.268  Sum_probs=105.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHH-------------H
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATIS-------------F  120 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~  120 (515)
                      +.+||+|||||+.|+++|+.|+++.  ++++|+|+||...+...... .+....-.|+...|.+..             +
T Consensus         2 ~~~DvvIIGgGI~G~a~a~~Ls~~~--p~~~V~llEk~~~~a~~sS~-~NSgviHag~~y~p~slka~l~~~g~~~~~~~   78 (429)
T COG0579           2 MDYDVVIIGGGIMGAATAYELSEYE--PDLSVALLEKEDGVAQESSS-NNSGVIHAGLYYTPGSLKAKLCVAGNINEFAI   78 (429)
T ss_pred             CceeEEEECCcHHHHHHHHHHHHhC--CCceEEEEEccCcccccccc-CcccceeccccCCCcchhhHHHHHHHHHHHHH
Confidence            5699999999999999999999972  23999999999988644321 111111111212222111             1


Q ss_pred             HHHcCC-------------------chhhhhhhc-cccceEEEEeCCCccceeeeccc-C---CCCcceEEechHHHHHH
Q 010200          121 FKEIGA-------------------WQYVQQHRH-AYFDKMQVWDYTGLGYTKYNARD-V---NKEILGCVVENKVLHSS  176 (515)
Q Consensus       121 l~~lgl-------------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~i~r~~l~~~  176 (515)
                      -++++.                   .+.+.+... ..+..+...+........-.... .   ...+.+..++...+...
T Consensus        79 ~kq~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~  158 (429)
T COG0579          79 CKQLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRA  158 (429)
T ss_pred             HHHhCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHH
Confidence            111210                   000000000 00111111111111000000000 0   00122356888899999


Q ss_pred             HHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCC-eeEEEcCCCcE-EEeeEEEEecCCCch-hhhh
Q 010200          177 LLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGH-LAKLDLSDGTS-LYAKLVVGADGGKSR-VREL  253 (515)
Q Consensus       177 L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~g~~-~~ad~vV~AdG~~S~-vr~~  253 (515)
                      |.+.+.+.| ++++++++|++++.                    ..+ ...+.+.+|++ ++|++||.|.|..|- +-+.
T Consensus       159 l~e~a~~~g-~~i~ln~eV~~i~~--------------------~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~  217 (429)
T COG0579         159 LAEEAQANG-VELRLNTEVTGIEK--------------------QSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQM  217 (429)
T ss_pred             HHHHHHHcC-CEEEecCeeeEEEE--------------------eCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHH
Confidence            999999997 99999999999987                    333 56677778876 999999999999875 5555


Q ss_pred             cCCcc
Q 010200          254 AGFKT  258 (515)
Q Consensus       254 l~~~~  258 (515)
                      +|...
T Consensus       218 ~g~~~  222 (429)
T COG0579         218 AGIPE  222 (429)
T ss_pred             hCCCc
Confidence            56554

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=99.21  E-value=6.9e-10  Score=119.32  Aligned_cols=71  Identities=23%  Similarity=0.295  Sum_probs=51.9

Q ss_pred             EechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEc---CCCc--EEEeeEEE
Q 010200          167 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---SDGT--SLYAKLVV  241 (515)
Q Consensus       167 ~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~g~--~~~ad~vV  241 (515)
                      .++...+...|.+.+.+.| ++++.+++|+++...           ++      ++..+.|..   .+++  ++.+|.||
T Consensus       228 ~vdp~rl~~al~~~A~~~G-a~i~~~~~V~~l~~~-----------~~------~g~v~gV~v~d~~tg~~~~i~a~~VV  289 (627)
T PLN02464        228 QMNDSRLNVALACTAALAG-AAVLNYAEVVSLIKD-----------ES------TGRIVGARVRDNLTGKEFDVYAKVVV  289 (627)
T ss_pred             EEcHHHHHHHHHHHHHhCC-cEEEeccEEEEEEEe-----------cC------CCcEEEEEEEECCCCcEEEEEeCEEE
Confidence            4688899999999999998 999999999999760           00      112222332   2333  68999999


Q ss_pred             EecCCCch-hhhhcC
Q 010200          242 GADGGKSR-VRELAG  255 (515)
Q Consensus       242 ~AdG~~S~-vr~~l~  255 (515)
                      .|+|+||. +++.++
T Consensus       290 nAaGaws~~l~~~~g  304 (627)
T PLN02464        290 NAAGPFCDEVRKMAD  304 (627)
T ss_pred             ECCCHhHHHHHHhcc
Confidence            99999986 666554

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=99.21  E-value=1.3e-10  Score=121.58  Aligned_cols=156  Identities=18%  Similarity=0.229  Sum_probs=93.9

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC-CCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcC-Cchhh
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP-ALGKSNFIKKEDPPDPRVSTVTPATISFFKEIG-AWQYV  130 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lg-l~~~~  130 (515)
                      +..|||||||||+||+.+|+.+++.    |.+|+|+|+.. .++.-+|+     +...+..- ....+-++.+| +...+
T Consensus         2 ~~~yDVIVVGGGpAG~eAA~~aAR~----G~kV~LiE~~~d~iG~m~Cn-----psiGG~ak-g~lvrEidalGg~~g~~   71 (618)
T PRK05192          2 PEEYDVIVVGGGHAGCEAALAAARM----GAKTLLLTHNLDTIGQMSCN-----PAIGGIAK-GHLVREIDALGGEMGKA   71 (618)
T ss_pred             CccceEEEECchHHHHHHHHHHHHc----CCcEEEEecccccccccCCc-----cccccchh-hHHHHHHHhcCCHHHHH
Confidence            3469999999999999999999996    99999999985 34333331     11111111 11122233343 11111


Q ss_pred             hhhhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccC
Q 010200          131 QQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVD  210 (515)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~  210 (515)
                      .....   ..+.+.+......+         ......+++..+...+.+.+.+.++++++ ...|+++..          
T Consensus        72 ~d~~g---iq~r~ln~skGpAV---------~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~----------  128 (618)
T PRK05192         72 IDKTG---IQFRMLNTSKGPAV---------RALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIV----------  128 (618)
T ss_pred             Hhhcc---CceeecccCCCCce---------eCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEe----------
Confidence            11111   01111111000000         00012578889999999999888668886 557888865          


Q ss_pred             CCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200          211 STPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                               +++....|.+.+|..+.|+.||+|+|.++.=
T Consensus       129 ---------e~grV~GV~t~dG~~I~Ak~VIlATGTFL~g  159 (618)
T PRK05192        129 ---------ENGRVVGVVTQDGLEFRAKAVVLTTGTFLRG  159 (618)
T ss_pred             ---------cCCEEEEEEECCCCEEECCEEEEeeCcchhc
Confidence                     1223344777888899999999999987653

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=99.20  E-value=6.6e-10  Score=101.88  Aligned_cols=152  Identities=20%  Similarity=0.230  Sum_probs=81.3

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCC--CCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIK--KEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      +|+|||+||+||++|+.|+.+    |++|+||||....+.+-...  .++...-..-.+.++.-.+++.+.   .+.+.+
T Consensus         3 siaIVGaGiAGl~aA~~L~~a----G~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve---~~~~~g   75 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREA----GREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVE---ALRDDG   75 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhc----CcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHH---HHHhCC
Confidence            699999999999999999997    99999999998765432210  011111112223333333333221   111111


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                      ....-.-.+|...+..   .+..... .++-..-.-..|.++|..     . .+|.++++|+++-.              
T Consensus        76 lV~~W~~~~~~~~~~~---~~~~~d~-~pyvg~pgmsalak~LAt-----d-L~V~~~~rVt~v~~--------------  131 (331)
T COG3380          76 LVDVWTPAVWTFTGDG---SPPRGDE-DPYVGEPGMSALAKFLAT-----D-LTVVLETRVTEVAR--------------  131 (331)
T ss_pred             ceeeccccccccccCC---CCCCCCC-CccccCcchHHHHHHHhc-----c-chhhhhhhhhhhee--------------
Confidence            1010000111111111   0000111 111111112333333332     3 67899999999977              


Q ss_pred             cccccccCCeeEEEcCCCc-EEEeeEEEEecC
Q 010200          215 ATTLFTKGHLAKLDLSDGT-SLYAKLVVGADG  245 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~-~~~ad~vV~AdG  245 (515)
                            .++.++++.++|. ...+|.||.|-=
T Consensus       132 ------~~~~W~l~~~~g~~~~~~d~vvla~P  157 (331)
T COG3380         132 ------TDNDWTLHTDDGTRHTQFDDVVLAIP  157 (331)
T ss_pred             ------cCCeeEEEecCCCcccccceEEEecC
Confidence                  4578999997765 788999988753

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.20  E-value=3.4e-11  Score=111.41  Aligned_cols=137  Identities=16%  Similarity=0.143  Sum_probs=77.9

Q ss_pred             EEECCCHHHHHHHHHHhcCCCCCCcE-EEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc-c
Q 010200           59 AVVGGGMVGMALACSLASMPLTKHLS-VAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH-A  136 (515)
Q Consensus        59 vIVGgG~aGl~~A~~L~~~~~~~G~~-V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~-~  136 (515)
                      +||||||+||++|+.|++.    |++ |+||||.+.++........                   ..    .+..... .
T Consensus         1 ~IIGaG~aGl~~a~~l~~~----g~~~v~v~e~~~~~Gg~w~~~~~-------------------~~----~~~~~~~~~   53 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLER----GIDPVVVLERNDRPGGVWRRYYS-------------------YT----RLHSPSFFS   53 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHT----T---EEEEESSSSSTTHHHCH-T-------------------TT----T-BSSSCCT
T ss_pred             CEECcCHHHHHHHHHHHhC----CCCcEEEEeCCCCCCCeeEEeCC-------------------CC----ccccCcccc
Confidence            7999999999999999996    888 9999999877422110000                   00    0000000 0


Q ss_pred             ccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcc
Q 010200          137 YFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSAT  216 (515)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~  216 (515)
                      ....+.  +.   ....+.... ..........+.++.++|.+.+++.+ ++++++++|++++.                
T Consensus        54 ~~~~~~--~~---~~~~~~~~~-~~~~~~~~~~~~~v~~yl~~~~~~~~-l~i~~~~~V~~v~~----------------  110 (203)
T PF13738_consen   54 SDFGLP--DF---ESFSFDDSP-EWRWPHDFPSGEEVLDYLQEYAERFG-LEIRFNTRVESVRR----------------  110 (203)
T ss_dssp             GGSS----CC---CHSCHHHHH-HHHHSBSSEBHHHHHHHHHHHHHHTT-GGEETS--EEEEEE----------------
T ss_pred             ccccCC--cc---cccccccCC-CCCCCcccCCHHHHHHHHHHHHhhcC-cccccCCEEEEEEE----------------
Confidence            000000  00   000000000 00001123678889999999999987 88999999999987                


Q ss_pred             cccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200          217 TLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR  249 (515)
Q Consensus       217 ~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~  249 (515)
                          .++.++|++.++.++.||.||.|+|..|.
T Consensus       111 ----~~~~w~v~~~~~~~~~a~~VVlAtG~~~~  139 (203)
T PF13738_consen  111 ----DGDGWTVTTRDGRTIRADRVVLATGHYSH  139 (203)
T ss_dssp             ----ETTTEEEEETTS-EEEEEEEEE---SSCS
T ss_pred             ----eccEEEEEEEecceeeeeeEEEeeeccCC
Confidence                34559999999988999999999998665

...

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=99.17  E-value=8.8e-10  Score=115.01  Aligned_cols=73  Identities=15%  Similarity=0.148  Sum_probs=55.1

Q ss_pred             EEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEc---CCCc--EEEeeEE
Q 010200          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---SDGT--SLYAKLV  240 (515)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~g~--~~~ad~v  240 (515)
                      ..++...+.+.|.+.+++.|+++|+++++|++++..                   .++.+.+..   .+|+  ++.|++|
T Consensus       178 g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~-------------------~dg~~~v~~~~~~~G~~~~i~A~~V  238 (494)
T PRK05257        178 TDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRN-------------------DDGSWTVTVKDLKTGEKRTVRAKFV  238 (494)
T ss_pred             eEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEEC-------------------CCCCEEEEEEEcCCCceEEEEcCEE
Confidence            568888999999999998876899999999999760                   112255543   3353  6999999


Q ss_pred             EEecCCCch-hhhhcCCc
Q 010200          241 VGADGGKSR-VRELAGFK  257 (515)
Q Consensus       241 V~AdG~~S~-vr~~l~~~  257 (515)
                      |.|+|.+|. +.+.+|..
T Consensus       239 VvaAGg~s~~L~~~~Gi~  256 (494)
T PRK05257        239 FIGAGGGALPLLQKSGIP  256 (494)
T ss_pred             EECCCcchHHHHHHcCCC
Confidence            999998874 66666655

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=99.16  E-value=1e-09  Score=114.18  Aligned_cols=71  Identities=17%  Similarity=0.231  Sum_probs=56.3

Q ss_pred             EEechHHHHHHHHHHHhc----CCC-ceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEE
Q 010200          166 CVVENKVLHSSLLSCMQN----TEF-QKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLV  240 (515)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~----~g~-v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~v  240 (515)
                      ..++...+...|.+.+++    .|. ++|+++++|++++.                   +.+..+.|.+.+| ++.||.|
T Consensus       206 ~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~-------------------~~~~~~~V~T~~G-~i~A~~V  265 (497)
T PTZ00383        206 TTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIER-------------------SNDSLYKIHTNRG-EIRARFV  265 (497)
T ss_pred             EEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEe-------------------cCCCeEEEEECCC-EEEeCEE
Confidence            357888999999999988    653 78999999999976                   1235577877777 5999999


Q ss_pred             EEecCCCch-hhhhcCC
Q 010200          241 VGADGGKSR-VRELAGF  256 (515)
Q Consensus       241 V~AdG~~S~-vr~~l~~  256 (515)
                      |.|.|.||. +-+.+|.
T Consensus       266 VvaAG~~S~~La~~~Gi  282 (497)
T PTZ00383        266 VVSACGYSLLFAQKMGY  282 (497)
T ss_pred             EECcChhHHHHHHHhCC
Confidence            999999985 5555654

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.16  E-value=3.9e-10  Score=116.76  Aligned_cols=158  Identities=11%  Similarity=0.134  Sum_probs=89.1

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhh
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQ  131 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~  131 (515)
                      +....+|+||||||+||++|..|++.    |++|+||||.+.++............  ..++.+... ... -.+++.+.
T Consensus         7 ~~~~~~VaIIGAG~aGL~aA~~l~~~----G~~v~vfE~~~~vGG~W~~~~~~~~d--~~~~~~~~~-~~~-s~~Y~~L~   78 (461)
T PLN02172          7 PINSQHVAVIGAGAAGLVAARELRRE----GHTVVVFEREKQVGGLWVYTPKSESD--PLSLDPTRS-IVH-SSVYESLR   78 (461)
T ss_pred             CCCCCCEEEECCcHHHHHHHHHHHhc----CCeEEEEecCCCCcceeecCCCcCCC--ccccCCCCc-ccc-hhhhhhhh
Confidence            33467999999999999999999996    99999999999875322111110000  001111000 000 00000110


Q ss_pred             hhhccccceEEEEeCCCccceeeeccc----CCCCcceEEechHHHHHHHHHHHhcCCCce--EEcCCeeEEEEeCCCCC
Q 010200          132 QHRHAYFDKMQVWDYTGLGYTKYNARD----VNKEILGCVVENKVLHSSLLSCMQNTEFQK--TIYPSRLTSMALLPSSS  205 (515)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~--i~~~~~v~~i~~~~~~~  205 (515)
                      ...  +...+.+.+        ++...    ..... .....+.++.++|.+.++..+ +.  |+++++|++++.     
T Consensus        79 tn~--p~~~m~f~d--------fp~~~~~~~~~~~~-~~fp~~~ev~~YL~~~a~~fg-l~~~I~~~t~V~~V~~-----  141 (461)
T PLN02172         79 TNL--PRECMGYRD--------FPFVPRFDDESRDS-RRYPSHREVLAYLQDFAREFK-IEEMVRFETEVVRVEP-----  141 (461)
T ss_pred             ccC--CHhhccCCC--------CCCCcccccccCcC-CCCCCHHHHHHHHHHHHHHcC-CcceEEecCEEEEEee-----
Confidence            000  000011100        11000    00000 112456789999999998887 66  899999999976     


Q ss_pred             CcccCCCCCcccccccCCeeEEEcCCC--c--EEEeeEEEEecCCCch
Q 010200          206 SISVDSTPSATTLFTKGHLAKLDLSDG--T--SLYAKLVVGADGGKSR  249 (515)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~v~~~~g--~--~~~ad~vV~AdG~~S~  249 (515)
                                     .+..++|+..++  .  +..+|.||.|+|..+.
T Consensus       142 ---------------~~~~w~V~~~~~~~~~~~~~~d~VIvAtG~~~~  174 (461)
T PLN02172        142 ---------------VDGKWRVQSKNSGGFSKDEIFDAVVVCNGHYTE  174 (461)
T ss_pred             ---------------cCCeEEEEEEcCCCceEEEEcCEEEEeccCCCC
Confidence                           335677776542  2  4679999999998654

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.16  E-value=6.7e-10  Score=115.79  Aligned_cols=72  Identities=14%  Similarity=0.211  Sum_probs=54.8

Q ss_pred             EEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEc---CCC--cEEEeeEE
Q 010200          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---SDG--TSLYAKLV  240 (515)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~g--~~~~ad~v  240 (515)
                      ..++...+...|.+.+.+.| ++|+++++|++++..                   .+..+.+.+   .+|  .++.+|+|
T Consensus       173 g~Vdp~~l~~aL~~~a~~~G-v~i~~~t~V~~i~~~-------------------~~~~v~v~~~~~~~g~~~~i~A~~V  232 (483)
T TIGR01320       173 TDVDFGALTKQLLGYLVQNG-TTIRFGHEVRNLKRQ-------------------SDGSWTVTVKNTRTGGKRTLNTRFV  232 (483)
T ss_pred             EEECHHHHHHHHHHHHHhCC-CEEEeCCEEEEEEEc-------------------CCCeEEEEEeeccCCceEEEECCEE
Confidence            46888999999999999988 999999999999760                   112344442   234  26899999


Q ss_pred             EEecCCCch-hhhhcCCc
Q 010200          241 VGADGGKSR-VRELAGFK  257 (515)
Q Consensus       241 V~AdG~~S~-vr~~l~~~  257 (515)
                      |.|.|.+|. +++.+|..
T Consensus       233 V~AAG~~s~~La~~~Gi~  250 (483)
T TIGR01320       233 FVGAGGGALPLLQKSGIP  250 (483)
T ss_pred             EECCCcchHHHHHHcCCC
Confidence            999998874 66667655

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.15  E-value=2e-09  Score=110.30  Aligned_cols=169  Identities=17%  Similarity=0.248  Sum_probs=105.0

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCC---chh
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGA---WQY  129 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl---~~~  129 (515)
                      +..+||+|||||+.|+-+|+.++..    |++|+++|++....         ...++...+-..++++|+...+   .+.
T Consensus        10 ~~~~DviVIGGGitG~GiArDaA~R----Gl~v~LvE~~D~As---------GTSsrstkLiHGGlRYl~~~e~~lvrEa   76 (532)
T COG0578          10 MEEFDVIVIGGGITGAGIARDAAGR----GLKVALVEKGDLAS---------GTSSRSTKLIHGGLRYLEQYEFSLVREA   76 (532)
T ss_pred             ccCCCEEEECCchhhHHHHHHHHhC----CCeEEEEecCcccC---------cccCccccCccchhhhhhhcchHHHHHH
Confidence            3789999999999999999999995    99999999999762         2234445555566666665432   122


Q ss_pred             hhhh---------hccccceE-EEEe----------------CCCc------cceeeecc-------cC-------CCCc
Q 010200          130 VQQH---------RHAYFDKM-QVWD----------------YTGL------GYTKYNAR-------DV-------NKEI  163 (515)
Q Consensus       130 ~~~~---------~~~~~~~~-~~~~----------------~~~~------~~~~~~~~-------~~-------~~~~  163 (515)
                      +.+.         ...+...+ .+++                ....      ....+...       ..       ...+
T Consensus        77 l~Er~vL~~~APH~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y  156 (532)
T COG0578          77 LAEREVLLRIAPHLVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRY  156 (532)
T ss_pred             HHHHHHHHHhCccccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEE
Confidence            2111         11011000 0000                0000      00000000       00       0012


Q ss_pred             ceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCC---Cc--EEEee
Q 010200          164 LGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD---GT--SLYAK  238 (515)
Q Consensus       164 ~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---g~--~~~ad  238 (515)
                      ..+.++-.+|.-.....+.+.| .+++..++|+++..                    +++.+.|+..|   |+  +++++
T Consensus       157 ~D~~vddaRLv~~~a~~A~~~G-a~il~~~~v~~~~r--------------------e~~v~gV~~~D~~tg~~~~ira~  215 (532)
T COG0578         157 PDGVVDDARLVAANARDAAEHG-AEILTYTRVESLRR--------------------EGGVWGVEVEDRETGETYEIRAR  215 (532)
T ss_pred             ccceechHHHHHHHHHHHHhcc-cchhhcceeeeeee--------------------cCCEEEEEEEecCCCcEEEEEcC
Confidence            2246777888888999999998 89999999999987                    33344555544   32  69999


Q ss_pred             EEEEecCCCch-hhhhcC
Q 010200          239 LVVGADGGKSR-VRELAG  255 (515)
Q Consensus       239 ~vV~AdG~~S~-vr~~l~  255 (515)
                      .||.|+|.|+- +++..+
T Consensus       216 ~VVNAaGpW~d~i~~~~~  233 (532)
T COG0578         216 AVVNAAGPWVDEILEMAG  233 (532)
T ss_pred             EEEECCCccHHHHHHhhc
Confidence            99999999986 455553

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=99.14  E-value=3.4e-10  Score=106.81  Aligned_cols=175  Identities=11%  Similarity=0.058  Sum_probs=104.4

Q ss_pred             CCCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhh
Q 010200           51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYV  130 (515)
Q Consensus        51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~  130 (515)
                      .+.+..||+|||||+-|+++|++|++.    |.++.++|+.+.+...|......+.....+.-.....-.++.+..|..+
T Consensus         3 ~~~~~~~viiVGAGVfG~stAyeLaK~----g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~   78 (399)
T KOG2820|consen    3 EMVKSRDVIIVGAGVFGLSTAYELAKR----GDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNL   78 (399)
T ss_pred             ccccceeEEEEcccccchHHHHHHHhc----CCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhC
Confidence            345678999999999999999999996    8999999999988665542211111111110000000011111122221


Q ss_pred             hhhhcc--ccceEEEEeCCCc-------------------------cceeee------cccC-CCCcceEEechHHHHHH
Q 010200          131 QQHRHA--YFDKMQVWDYTGL-------------------------GYTKYN------ARDV-NKEILGCVVENKVLHSS  176 (515)
Q Consensus       131 ~~~~~~--~~~~~~~~~~~~~-------------------------~~~~~~------~~~~-~~~~~~~~i~r~~l~~~  176 (515)
                      ......  ......++.++..                         ..-.|+      .... -....+-.+....-.++
T Consensus        79 ~~~~g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~  158 (399)
T KOG2820|consen   79 PEESGVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKA  158 (399)
T ss_pred             hhhhceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHH
Confidence            111000  0111111111110                         000111      0000 01233446778888899


Q ss_pred             HHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCC
Q 010200          177 LLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGK  247 (515)
Q Consensus       177 L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~  247 (515)
                      |.+.+.+.| +.++.|.+|+.+...                 ++.+..+.|.+.+|..+.++-+|.+.|+|
T Consensus       159 ~~~~~~~~G-~i~~dg~~v~~~~~~-----------------~e~~~~v~V~Tt~gs~Y~akkiI~t~GaW  211 (399)
T KOG2820|consen  159 LQDKARELG-VIFRDGEKVKFIKFV-----------------DEEGNHVSVQTTDGSIYHAKKIIFTVGAW  211 (399)
T ss_pred             HHHHHHHcC-eEEecCcceeeEeec-----------------cCCCceeEEEeccCCeeecceEEEEecHH
Confidence            999999999 899999999999761                 12557789999999999999999999997

>PLN02661 Putative thiazole synthesis

Probab=99.14  E-value=1e-09  Score=107.23  Aligned_cols=144  Identities=18%  Similarity=0.239  Sum_probs=87.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      .++||+|||||++|+++|+.|++.   +|++|+|+||...++...|.  .+ .......+.....++|+++|+.      
T Consensus        91 ~~~DVlIVGaG~AGl~AA~~La~~---~g~kV~viEk~~~~GGG~~~--gg-~l~~~~vv~~~a~e~LeElGV~------  158 (357)
T PLN02661         91 ADTDVVIVGAGSAGLSCAYELSKN---PNVKVAIIEQSVSPGGGAWL--GG-QLFSAMVVRKPAHLFLDELGVP------  158 (357)
T ss_pred             ccCCEEEECCHHHHHHHHHHHHHc---CCCeEEEEecCcccccceee--Cc-ccccccccccHHHHHHHHcCCC------
Confidence            358999999999999999999975   48999999998877533321  00 0000112222234556666541      


Q ss_pred             hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (515)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~  213 (515)
                          ++.      .+ .             +....+-..+...|.+++.+..+++++.++.++++..+            
T Consensus       159 ----fd~------~d-g-------------y~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~------------  202 (357)
T PLN02661        159 ----YDE------QE-N-------------YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK------------  202 (357)
T ss_pred             ----ccc------CC-C-------------eeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEec------------
Confidence                110      00 0             00111334566788887766555999999999999761            


Q ss_pred             CcccccccCCeeEEEc-----C--CC-----cEEEeeEEEEecCCCchh
Q 010200          214 SATTLFTKGHLAKLDL-----S--DG-----TSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       214 ~~~~~~~~~~~~~v~~-----~--~g-----~~~~ad~vV~AdG~~S~v  250 (515)
                      ++     ...++.+.+     +  ++     ..+.|+.||.|+|..+++
T Consensus       203 ~g-----rVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~~  246 (357)
T PLN02661        203 GD-----RVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPF  246 (357)
T ss_pred             CC-----EEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCcc
Confidence            00     112233211     1  11     268999999999977764

>PLN02612 phytoene desaturase

Probab=99.13  E-value=5.9e-08  Score=103.53  Aligned_cols=74  Identities=19%  Similarity=0.229  Sum_probs=51.7

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCC--CCCCCCcEE----EeCHhHHHHHHHcC
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKK--EDPPDPRVS----TVTPATISFFKEIG  125 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~--~~~~~~~~~----~l~~~~~~~l~~lg  125 (515)
                      ...+.+|+|||||++||++|+.|++.    |++|+|+|+...++.......  .+.....|.    ...++..++++++|
T Consensus        90 ~~~~~~v~iiG~G~~Gl~~a~~l~~~----g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG  165 (567)
T PLN02612         90 PAKPLKVVIAGAGLAGLSTAKYLADA----GHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELG  165 (567)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHhc----CCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhC
Confidence            34568999999999999999999996    999999999987654332111  111111121    23467788999998


Q ss_pred             Cchh
Q 010200          126 AWQY  129 (515)
Q Consensus       126 l~~~  129 (515)
                      +.+.
T Consensus       166 ~~~~  169 (567)
T PLN02612        166 INDR  169 (567)
T ss_pred             Cccc
Confidence            8554

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=99.13  E-value=4.6e-09  Score=107.34  Aligned_cols=64  Identities=19%  Similarity=0.193  Sum_probs=52.4

Q ss_pred             EechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCC
Q 010200          167 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGG  246 (515)
Q Consensus       167 ~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~  246 (515)
                      .++...+...|.+.+.+.|...+..++.+..++.                    ....+.|.+.+|. +.+|.||.|+|.
T Consensus       152 ~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~--------------------~~~~~~v~t~~g~-i~a~~vv~a~G~  210 (387)
T COG0665         152 HLDPRLLTRALAAAAEELGVVIIEGGTPVTSLER--------------------DGRVVGVETDGGT-IEADKVVLAAGA  210 (387)
T ss_pred             cCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEe--------------------cCcEEEEEeCCcc-EEeCEEEEcCch
Confidence            4667889999999999998667777999999875                    1145778888887 999999999999


Q ss_pred             Cchhh
Q 010200          247 KSRVR  251 (515)
Q Consensus       247 ~S~vr  251 (515)
                      ++..-
T Consensus       211 ~~~~l  215 (387)
T COG0665         211 WAGEL  215 (387)
T ss_pred             HHHHH
Confidence            98753

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=99.10  E-value=5e-10  Score=118.95  Aligned_cols=70  Identities=17%  Similarity=0.195  Sum_probs=51.8

Q ss_pred             EEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCee-EEEc---CCC--cEEEeeE
Q 010200          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLA-KLDL---SDG--TSLYAKL  239 (515)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~---~~g--~~~~ad~  239 (515)
                      ..++...+...+.+.+.+.| ++++.+++|+++..                    .++.+ .|.+   .++  .++.||.
T Consensus       144 g~vdp~rl~~al~~~A~~~G-a~i~~~t~V~~i~~--------------------~~~~v~gv~v~d~~~g~~~~i~A~~  202 (546)
T PRK11101        144 GTVDPFRLTAANMLDAKEHG-AQILTYHEVTGLIR--------------------EGDTVCGVRVRDHLTGETQEIHAPV  202 (546)
T ss_pred             cEECHHHHHHHHHHHHHhCC-CEEEeccEEEEEEE--------------------cCCeEEEEEEEEcCCCcEEEEECCE
Confidence            35788899999999999998 99999999999976                    22222 2333   223  3799999


Q ss_pred             EEEecCCCch-hhhhcCC
Q 010200          240 VVGADGGKSR-VRELAGF  256 (515)
Q Consensus       240 vV~AdG~~S~-vr~~l~~  256 (515)
                      ||.|+|.|+. +.+..+.
T Consensus       203 VVnAaG~wa~~l~~~~g~  220 (546)
T PRK11101        203 VVNAAGIWGQHIAEYADL  220 (546)
T ss_pred             EEECCChhHHHHHHhcCC
Confidence            9999999985 4444443

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=99.10  E-value=1.4e-08  Score=106.34  Aligned_cols=74  Identities=18%  Similarity=0.310  Sum_probs=48.1

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCC--CCCcEEEEEcCCCCCCCCCCCCCC-CCC-CCcE---EEeCHhHHHHHHHcCCchh
Q 010200           57 DVAVVGGGMVGMALACSLASMPL--TKHLSVAIIDSNPALGKSNFIKKE-DPP-DPRV---STVTPATISFFKEIGAWQY  129 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~--~~G~~V~v~E~~~~~~~~~~~~~~-~~~-~~~~---~~l~~~~~~~l~~lgl~~~  129 (515)
                      +|+|||||++||++|+.|++.+-  ..|++|+|+|+++.++.+...... +.. ...+   ..-.+...++++++|+.+.
T Consensus         3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~~~~~~~~l~~~lgl~~~   82 (463)
T PRK12416          3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVARNEHVMPLVKDLNLEEE   82 (463)
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHhcCCHHHHHHHHHcCCccc
Confidence            69999999999999999998510  014899999999988654321100 000 0001   1124566788899998654


Q ss_pred             h
Q 010200          130 V  130 (515)
Q Consensus       130 ~  130 (515)
                      +
T Consensus        83 ~   83 (463)
T PRK12416         83 M   83 (463)
T ss_pred             e
Confidence            4

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=99.09  E-value=1.3e-09  Score=113.03  Aligned_cols=73  Identities=14%  Similarity=0.130  Sum_probs=54.7

Q ss_pred             EEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEE---cCCCc--EEEeeEE
Q 010200          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLD---LSDGT--SLYAKLV  240 (515)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~g~--~~~ad~v  240 (515)
                      ..++...+.+.|.+.+.+.++++++++++|++++.                   +.++.|++.   ..+++  ++.||+|
T Consensus       179 ~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~-------------------~~d~~w~v~v~~t~~g~~~~i~Ad~V  239 (497)
T PRK13339        179 TDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLER-------------------LSDGGWEVTVKDRNTGEKREQVADYV  239 (497)
T ss_pred             eecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEE-------------------CCCCCEEEEEEecCCCceEEEEcCEE
Confidence            46888899999999986553499999999999976                   113446665   33442  6899999


Q ss_pred             EEecCCCch-hhhhcCCc
Q 010200          241 VGADGGKSR-VRELAGFK  257 (515)
Q Consensus       241 V~AdG~~S~-vr~~l~~~  257 (515)
                      |.|.|++|. +.+.+|..
T Consensus       240 V~AAGawS~~La~~~Gi~  257 (497)
T PRK13339        240 FIGAGGGAIPLLQKSGIP  257 (497)
T ss_pred             EECCCcchHHHHHHcCCC
Confidence            999999984 56666654

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=99.07  E-value=3.5e-08  Score=103.43  Aligned_cols=75  Identities=16%  Similarity=0.258  Sum_probs=48.4

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCC-C-CCCCcEE---EeCHhHHHHHHHcCCchhh
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKE-D-PPDPRVS---TVTPATISFFKEIGAWQYV  130 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~-~-~~~~~~~---~l~~~~~~~l~~lgl~~~~  130 (515)
                      .||+|||||++||++|+.|++.+...|++|+|+|+++.++.+...... + .....+.   .-.++..++++++|+.+.+
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~~~~~~~l~~~lgl~~~~   82 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKSAPDLVKDLGLEHVL   82 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccCChHHHHHHHHcCCCccc
Confidence            589999999999999999999410018999999999988543211000 0 0000011   1134577888999886543

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>TIGR00275 flavoprotein, HI0933 family

Probab=99.07  E-value=3.5e-10  Score=115.64  Aligned_cols=156  Identities=21%  Similarity=0.300  Sum_probs=86.2

Q ss_pred             EEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHh-HHHHHHHcCCchhhhhhhccc
Q 010200           59 AVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPA-TISFFKEIGAWQYVQQHRHAY  137 (515)
Q Consensus        59 vIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~l~~lgl~~~~~~~~~~~  137 (515)
                      +|||||++||++|+.|++.    |++|+|+||.+.++.+....+    .+++...+.. ...+....+-...........
T Consensus         1 vIIGgG~aGl~aAi~aa~~----G~~V~llEk~~~~G~k~~~sG----~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~   72 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAARE----GLSVLLLEKNKKIGKKLLISG----GGRCNLTNSCPTPEFVAYYPRNGKFLRSALSR   72 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhc----CCcEEEEecCccccccccccC----CceEEccCCCcchhHHHhcCCCcHHHHHHHHh
Confidence            6999999999999999996    999999999987754321111    1111111111 111112221100100000000


Q ss_pred             c---ceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          138 F---DKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       138 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                      +   +-+.++...+.. +...  . ....+...-....+.+.|.+.+++.| ++++++++|++++.              
T Consensus        73 ~~~~d~~~~~~~~Gv~-~~~~--~-~g~~~p~~~~a~~v~~~L~~~l~~~g-v~i~~~~~V~~i~~--------------  133 (400)
T TIGR00275        73 FSNKDLIDFFESLGLE-LKVE--E-DGRVFPCSDSAADVLDALLNELKELG-VEILTNSKVKSIKK--------------  133 (400)
T ss_pred             CCHHHHHHHHHHcCCe-eEEe--c-CCEeECCCCCHHHHHHHHHHHHHHCC-CEEEeCCEEEEEEe--------------
Confidence            0   000000000100 0000  0 00000011235778899999999887 99999999999965              


Q ss_pred             cccccccCCeeEEEcCCCcEEEeeEEEEecCCCc
Q 010200          215 ATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKS  248 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S  248 (515)
                            .+..+.+.+ ++.++.+|.||.|+|.+|
T Consensus       134 ------~~~~~~v~~-~~~~i~ad~VIlAtG~~s  160 (400)
T TIGR00275       134 ------DDNGFGVET-SGGEYEADKVILATGGLS  160 (400)
T ss_pred             ------cCCeEEEEE-CCcEEEcCEEEECCCCcc
Confidence                  234466666 455799999999999987

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=99.07  E-value=1.2e-09  Score=108.60  Aligned_cols=148  Identities=20%  Similarity=0.256  Sum_probs=90.3

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEE-cCCCCCCCCCCCCCCCCCCCcEEEeCHh-HHHHHHHcC-Cchhhhhh
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAII-DSNPALGKSNFIKKEDPPDPRVSTVTPA-TISFFKEIG-AWQYVQQH  133 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~-E~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~l~~lg-l~~~~~~~  133 (515)
                      ||+|||||.||+.+|+.+++.    |.+|++| ++......-+|+     +  .-.++... ..+.++.+| +.-.+.+ 
T Consensus         1 DViVVGgG~AG~eAA~aaAr~----G~~V~Lit~~~d~i~~~~Cn-----p--sigg~~kg~L~~Eidalgg~m~~~aD-   68 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARM----GAKVLLITHNTDTIGEMSCN-----P--SIGGIAKGHLVREIDALGGLMGRAAD-   68 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHT----T--EEEEES-GGGTT--SSS-----S--EEESTTHHHHHHHHHHTT-SHHHHHH-
T ss_pred             CEEEECCCHHHHHHHHHHHHC----CCCEEEEeecccccccccch-----h--hhccccccchhHHHhhhhhHHHHHHh-
Confidence            899999999999999999997    9999999 555555444551     1  11111211 123344454 2111111 


Q ss_pred             hccccceEEEEeC-CCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCC
Q 010200          134 RHAYFDKMQVWDY-TGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (515)
Q Consensus       134 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~  212 (515)
                          ...+++... ....        .......+.++|..+...+.+.+++.++++|+. .+|+++..            
T Consensus        69 ----~~~i~~~~lN~skG--------pav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~-~~V~~l~~------------  123 (392)
T PF01134_consen   69 ----ETGIHFRMLNRSKG--------PAVHALRAQVDRDKYSRAMREKLESHPNLTIIQ-GEVTDLIV------------  123 (392)
T ss_dssp             ----HHEEEEEEESTTS---------GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEE-S-EEEEEE------------
T ss_pred             ----HhhhhhhcccccCC--------CCccchHhhccHHHHHHHHHHHHhcCCCeEEEE-cccceEEe------------
Confidence                122222211 1100        011222358999999999999999988899874 69999976            


Q ss_pred             CCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCc
Q 010200          213 PSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKS  248 (515)
Q Consensus       213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S  248 (515)
                             +++....|.+.+|+++.+|.||.|+|.+.
T Consensus       124 -------e~~~v~GV~~~~g~~~~a~~vVlaTGtfl  152 (392)
T PF01134_consen  124 -------ENGKVKGVVTKDGEEIEADAVVLATGTFL  152 (392)
T ss_dssp             -------CTTEEEEEEETTSEEEEECEEEE-TTTGB
T ss_pred             -------cCCeEEEEEeCCCCEEecCEEEEeccccc
Confidence                   13455668889999999999999999944

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=99.07  E-value=6.5e-11  Score=122.07  Aligned_cols=154  Identities=20%  Similarity=0.210  Sum_probs=36.2

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCH-hHHHHHHHcCCchhhhhhhc
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTP-ATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~l~~lgl~~~~~~~~~  135 (515)
                      |||||||||+|+++|+.+++.    |.+|+|+||.+.++....       .+....+.. .... ...-|+..++.+...
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~----G~~VlLiE~~~~lGG~~t-------~~~~~~~~~~~~~~-~~~~gi~~e~~~~~~   68 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARA----GAKVLLIEKGGFLGGMAT-------SGGVSPFDGNHDED-QVIGGIFREFLNRLR   68 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHT----TS-EEEE-SSSSSTGGGG-------GSSS-EETTEEHHH-HHHHHHHHHHHHST-
T ss_pred             CEEEECccHHHHHHHHHHHHC----CCEEEEEECCccCCCcce-------ECCcCChhhcchhh-ccCCCHHHHHHHHHh
Confidence            899999999999999999997    999999999998853321       111111211 1111 111123333333221


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                      . ....           ..+  ........+.+++..+...|.+.+.+.| ++|+++++|+++..+            ++
T Consensus        69 ~-~~~~-----------~~~--~~~~~~~~~~~~~~~~~~~l~~~l~e~g-v~v~~~t~v~~v~~~------------~~  121 (428)
T PF12831_consen   69 A-RGGY-----------PQE--DRYGWVSNVPFDPEVFKAVLDEMLAEAG-VEVLLGTRVVDVIRD------------GG  121 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             h-hccc-----------ccc--cccccccccccccccccccccccccccc-ccccccccccccccc------------cc
Confidence            0 0000           000  0000000134666777777888887777 999999999999761            01


Q ss_pred             ccccccCCeeEEEcCCC-cEEEeeEEEEecCCCchhhhhcC
Q 010200          216 TTLFTKGHLAKLDLSDG-TSLYAKLVVGADGGKSRVRELAG  255 (515)
Q Consensus       216 ~~~~~~~~~~~v~~~~g-~~~~ad~vV~AdG~~S~vr~~l~  255 (515)
                           ....+++...+| .++.||++|+|+|- +.+-...|
T Consensus       122 -----~i~~V~~~~~~g~~~i~A~~~IDaTG~-g~l~~~aG  156 (428)
T PF12831_consen  122 -----RITGVIVETKSGRKEIRAKVFIDATGD-GDLAALAG  156 (428)
T ss_dssp             -----------------------------------------
T ss_pred             -----ccccccccccccccccccccccccccc-cccccccc
Confidence                 223344443334 48999999999994 55444443

>PRK07233 hypothetical protein; Provisional

Probab=99.07  E-value=5.2e-08  Score=101.17  Aligned_cols=69  Identities=26%  Similarity=0.367  Sum_probs=47.7

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCC-CCCCCcE----EEeCHhHHHHHHHcCCchh
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKE-DPPDPRV----STVTPATISFFKEIGAWQY  129 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~-~~~~~~~----~~l~~~~~~~l~~lgl~~~  129 (515)
                      +|+|||||++||++|+.|++.    |++|+|+|+.+.++........ +.....+    ..-.+...++++++|+.+.
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~----G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~~~~~~~~l~~~lg~~~~   74 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKR----GHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFKSDEALLELLDELGLEDK   74 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHC----CCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhccccHHHHHHHHHcCCCCc
Confidence            599999999999999999996    9999999999988654321110 1110011    1124567788888887443

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=99.06  E-value=1.6e-09  Score=114.19  Aligned_cols=40  Identities=30%  Similarity=0.566  Sum_probs=36.1

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      .+.++||||||||++|+++|+.+++.    |.+|+|+||.+..+
T Consensus        58 ~~~~~DVvVVG~G~AGl~AAi~Aa~~----Ga~VivlEK~~~~G   97 (506)
T PRK06481         58 LKDKYDIVIVGAGGAGMSAAIEAKDA----GMNPVILEKMPVAG   97 (506)
T ss_pred             ccccCCEEEECcCHHHHHHHHHHHHC----CCCEEEEECCCCCC
Confidence            44579999999999999999999996    99999999998764

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=99.05  E-value=1.2e-09  Score=113.92  Aligned_cols=61  Identities=20%  Similarity=0.109  Sum_probs=51.0

Q ss_pred             EEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecC
Q 010200          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADG  245 (515)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG  245 (515)
                      ..++...+...|.+.+.+.| ++|+.+++|++++.                     +..+.|.+.+| ++.||.||.|+|
T Consensus       178 g~i~P~~l~~~L~~~a~~~G-v~i~~~t~V~~i~~---------------------~~~~~v~t~~g-~v~A~~VV~Atg  234 (460)
T TIGR03329       178 ASVQPGLLVRGLRRVALELG-VEIHENTPMTGLEE---------------------GQPAVVRTPDG-QVTADKVVLALN  234 (460)
T ss_pred             eEECHHHHHHHHHHHHHHcC-CEEECCCeEEEEee---------------------CCceEEEeCCc-EEECCEEEEccc
Confidence            46788999999999999998 99999999999864                     13356777766 599999999999


Q ss_pred             CCch
Q 010200          246 GKSR  249 (515)
Q Consensus       246 ~~S~  249 (515)
                      +++.
T Consensus       235 a~s~  238 (460)
T TIGR03329       235 AWMA  238 (460)
T ss_pred             cccc
Confidence            9975

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=99.04  E-value=9.4e-10  Score=111.52  Aligned_cols=58  Identities=17%  Similarity=0.159  Sum_probs=47.0

Q ss_pred             EEechHHHHHHHHHHHhcC-CCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEec
Q 010200          166 CVVENKVLHSSLLSCMQNT-EFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGAD  244 (515)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~-g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~Ad  244 (515)
                      ..++...+...|.+.+.+. | ++++.+++|++++.                      .  .|.+.+|. +.||.||.|+
T Consensus       140 g~v~p~~~~~~l~~~~~~~~G-v~i~~~t~V~~i~~----------------------~--~v~t~~g~-i~a~~VV~A~  193 (365)
T TIGR03364       140 LRVEPREAIPALAAYLAEQHG-VEFHWNTAVTSVET----------------------G--TVRTSRGD-VHADQVFVCP  193 (365)
T ss_pred             eeECHHHHHHHHHHHHHhcCC-CEEEeCCeEEEEec----------------------C--eEEeCCCc-EEeCEEEECC
Confidence            4577888999999988765 6 99999999999964                      2  45666664 7899999999


Q ss_pred             CCCch
Q 010200          245 GGKSR  249 (515)
Q Consensus       245 G~~S~  249 (515)
                      |.++.
T Consensus       194 G~~s~  198 (365)
T TIGR03364       194 GADFE  198 (365)
T ss_pred             CCChh
Confidence            99874

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.02  E-value=2.6e-09  Score=105.02  Aligned_cols=113  Identities=24%  Similarity=0.330  Sum_probs=79.6

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      |||+|||||++|+++|..|++.    |++|+|||+.. ++              |.....                    
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~----g~~v~lie~~~-~g--------------g~~~~~--------------------   41 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARA----NLKTLIIEGME-PG--------------GQLTTT--------------------   41 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHC----CCCEEEEeccC-CC--------------cceeec--------------------
Confidence            6999999999999999999996    99999999876 31              100000                    


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                         ..+.          .++  ...     ..+...++...+.+.+++.+ +++++ .+|++++.               
T Consensus        42 ---~~~~----------~~~--~~~-----~~~~~~~~~~~l~~~~~~~g-v~~~~-~~v~~v~~---------------   84 (300)
T TIGR01292        42 ---TEVE----------NYP--GFP-----EGISGPELMEKMKEQAVKFG-AEIIY-EEVIKVDL---------------   84 (300)
T ss_pred             ---cccc----------ccC--CCC-----CCCChHHHHHHHHHHHHHcC-CeEEE-EEEEEEEe---------------
Confidence               0000          000  000     01233467788888888887 89988 79999875               


Q ss_pred             ccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200          216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR  249 (515)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~  249 (515)
                           ....+.+...++.++.+|.||.|+|.+..
T Consensus        85 -----~~~~~~v~~~~~~~~~~d~liiAtG~~~~  113 (300)
T TIGR01292        85 -----SDRPFKVKTGDGKEYTAKAVIIATGASAR  113 (300)
T ss_pred             -----cCCeeEEEeCCCCEEEeCEEEECCCCCcc
Confidence                 33557777778888999999999998653

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=99.02  E-value=1.5e-07  Score=98.22  Aligned_cols=70  Identities=21%  Similarity=0.362  Sum_probs=46.1

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCC--CCCCCCCcE---EEeCHhHHHHHHHcCCch
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIK--KEDPPDPRV---STVTPATISFFKEIGAWQ  128 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~--~~~~~~~~~---~~l~~~~~~~l~~lgl~~  128 (515)
                      +|+|||||+|||++|+.|++.|  .+++|+|||+++.++.+....  .+......+   ..-.++..++++++|+.+
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~~G--~~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~   76 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHKKG--PDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLARKPSAPALVKELGLED   76 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHhC--CCCCEEEEEcCCCCcceEEEEeeCCeEEecChHHhcCCcHHHHHHHHHcCCcc
Confidence            6999999999999999999962  138999999999886432100  000000001   112345678888888754

>PRK07804 L-aspartate oxidase; Provisional

Probab=99.00  E-value=6.2e-09  Score=110.51  Aligned_cols=40  Identities=25%  Similarity=0.305  Sum_probs=35.8

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      .+..+||+|||||+|||++|+.+++.    |.+|+|+||....+
T Consensus        13 ~~~~~DVlVIG~G~AGl~AAi~aae~----G~~VilleK~~~~~   52 (541)
T PRK07804         13 WRDAADVVVVGSGVAGLTAALAARRA----GRRVLVVTKAALDD   52 (541)
T ss_pred             cccccCEEEECccHHHHHHHHHHHHc----CCeEEEEEccCCCC
Confidence            34579999999999999999999996    89999999998654

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.98  E-value=3.4e-09  Score=110.99  Aligned_cols=37  Identities=27%  Similarity=0.446  Sum_probs=34.0

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      +.++||||||||++||++|+.|++.    |.+|+|+||.+.
T Consensus         2 ~~~~DVvVVG~G~aGl~AA~~aa~~----G~~V~vlEk~~~   38 (466)
T PRK08274          2 ASMVDVLVIGGGNAALCAALAAREA----GASVLLLEAAPR   38 (466)
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHC----CCeEEEEeCCCC
Confidence            4568999999999999999999996    999999999874

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.98  E-value=3.1e-09  Score=108.19  Aligned_cols=137  Identities=16%  Similarity=0.168  Sum_probs=90.1

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHH----HHHHHc--CCc
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATI----SFFKEI--GAW  127 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~l~~l--gl~  127 (515)
                      ...+|+|||||||||++|..|.+.    |++|+|+||...++.-+             ...+..-    .+.+.+  ++.
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~~----g~~v~vfEr~~~iGGlW-------------~y~~~~~~~~ss~Y~~l~tn~p   67 (448)
T KOG1399|consen    5 MSKDVAVIGAGPAGLAAARELLRE----GHEVVVFERTDDIGGLW-------------KYTENVEVVHSSVYKSLRTNLP   67 (448)
T ss_pred             CCCceEEECcchHHHHHHHHHHHC----CCCceEEEecCCccceE-------------eecCcccccccchhhhhhccCC
Confidence            457899999999999999999996    99999999999884211             1111110    111111  111


Q ss_pred             hhhhhhhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCC-CceEEcCCeeEEEEeCCCCCC
Q 010200          128 QYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTE-FQKTIYPSRLTSMALLPSSSS  206 (515)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g-~v~i~~~~~v~~i~~~~~~~~  206 (515)
                      .+..                  ....++..   .....+..++.++.++|.+.++.-+ ...|.++++|..+..      
T Consensus        68 Ke~~------------------~~~dfpf~---~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~------  120 (448)
T KOG1399|consen   68 KEMM------------------GYSDFPFP---ERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDS------  120 (448)
T ss_pred             hhhh------------------cCCCCCCc---ccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEee------
Confidence            1111                  11112111   1122345667799999999998876 236899999999876      


Q ss_pred             cccCCCCCcccccccC-CeeEEEcCCC----cEEEeeEEEEecCCCc
Q 010200          207 ISVDSTPSATTLFTKG-HLAKLDLSDG----TSLYAKLVVGADGGKS  248 (515)
Q Consensus       207 ~~~~~~~~~~~~~~~~-~~~~v~~~~g----~~~~ad~vV~AdG~~S  248 (515)
                                    .. +.|.|...++    .+.-+|.||.|+|-+.
T Consensus       121 --------------~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~  153 (448)
T KOG1399|consen  121 --------------IDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYV  153 (448)
T ss_pred             --------------ccCCceeEEEecCCcceeEEEeeEEEEcccCcC
Confidence                          22 5688777654    3678999999999983

>TIGR02730 carot_isom carotene isomerase

Probab=98.97  E-value=9.1e-08  Score=100.90  Aligned_cols=65  Identities=23%  Similarity=0.369  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                      ..+.+.|.+.+++.| ++|+++++|++|..                   +++....|.+.+|+++.+|.||.|.|.+..+
T Consensus       229 ~~l~~~L~~~~~~~G-~~i~~~~~V~~I~~-------------------~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~  288 (493)
T TIGR02730       229 GQIAESLVKGLEKHG-GQIRYRARVTKIIL-------------------ENGKAVGVKLADGEKIYAKRIVSNATRWDTF  288 (493)
T ss_pred             HHHHHHHHHHHHHCC-CEEEeCCeeeEEEe-------------------cCCcEEEEEeCCCCEEEcCEEEECCChHHHH
Confidence            578899999999998 99999999999976                   1234566777888889999999999999888


Q ss_pred             hhhcC
Q 010200          251 RELAG  255 (515)
Q Consensus       251 r~~l~  255 (515)
                      ++.+.
T Consensus       289 ~~Ll~  293 (493)
T TIGR02730       289 GKLLK  293 (493)
T ss_pred             HHhCC
Confidence            77763

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.97  E-value=4.2e-09  Score=108.66  Aligned_cols=135  Identities=16%  Similarity=0.175  Sum_probs=81.9

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcE-EEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhh
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLS-VAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYV  130 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~-V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~  130 (515)
                      .+..+||+|||||++|+++|+.|+++    |.+ ++||||+..++...+.       .                      
T Consensus         5 ~~~~~~v~IIGaG~sGlaaa~~L~~~----g~~~~~i~Ek~~~~Gg~W~~-------~----------------------   51 (443)
T COG2072           5 VATHTDVAIIGAGQSGLAAAYALKQA----GVPDFVIFEKRDDVGGTWRY-------N----------------------   51 (443)
T ss_pred             cCCcccEEEECCCHHHHHHHHHHHHc----CCCcEEEEEccCCcCCcchh-------c----------------------
Confidence            45678999999999999999999997    777 9999999987433220       0                      


Q ss_pred             hhhhccccceEEEEeCCCccceeeecccCC--CCcceEEechHHHHHHHHHHHhcCC-CceEEcCCeeEEEEeCCCCCCc
Q 010200          131 QQHRHAYFDKMQVWDYTGLGYTKYNARDVN--KEILGCVVENKVLHSSLLSCMQNTE-FQKTIYPSRLTSMALLPSSSSI  207 (515)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~r~~l~~~L~~~~~~~g-~v~i~~~~~v~~i~~~~~~~~~  207 (515)
                            ....+...  .......++.....  ...    -....+..++.+.+++.+ .-++.++++|..+..       
T Consensus        52 ------ry~~l~~~--~p~~~~~~~~~p~~~~~~~----~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~-------  112 (443)
T COG2072          52 ------RYPGLRLD--SPKWLLGFPFLPFRWDEAF----APFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADW-------  112 (443)
T ss_pred             ------cCCceEEC--CchheeccCCCccCCcccC----CCcccHHHHHHHHHHHcCceeEEEcccceEEEEe-------
Confidence                  00111100  00001111111110  011    111224555555555554 245677777777766       


Q ss_pred             ccCCCCCcccccccCCeeEEEcCCCcE--EEeeEEEEecCCCch
Q 010200          208 SVDSTPSATTLFTKGHLAKLDLSDGTS--LYAKLVVGADGGKSR  249 (515)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~v~~~~g~~--~~ad~vV~AdG~~S~  249 (515)
                                 +++...++|++++|.+  +.+|.||.|+|..|.
T Consensus       113 -----------~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~  145 (443)
T COG2072         113 -----------DEDTKRWTVTTSDGGTGELTADFVVVATGHLSE  145 (443)
T ss_pred             -----------cCCCCeEEEEEcCCCeeeEecCEEEEeecCCCC
Confidence                       2244679999988875  559999999999664

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.97  E-value=4.5e-09  Score=109.28  Aligned_cols=63  Identities=16%  Similarity=0.005  Sum_probs=46.3

Q ss_pred             hHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCc--EEEeeEEEEecCCC
Q 010200          170 NKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT--SLYAKLVVGADGGK  247 (515)
Q Consensus       170 r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~--~~~ad~vV~AdG~~  247 (515)
                      -..+.+.|.+.+++.| ++|+++++|+++..+           +++     ...++.+...+++  .+.+|.||.|+|.+
T Consensus       129 g~~l~~~l~~~~~~~g-v~i~~~~~v~~l~~~-----------~~g-----~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~  191 (439)
T TIGR01813       129 GAEIVQKLYKKAKKEG-IDTRLNSKVEDLIQD-----------DQG-----TVVGVVVKGKGKGIYIKAAKAVVLATGGF  191 (439)
T ss_pred             HHHHHHHHHHHHHHcC-CEEEeCCEeeEeEEC-----------CCC-----cEEEEEEEeCCCeEEEEecceEEEecCCC
Confidence            3578899999999988 999999999999761           111     1123444444454  47899999999998


Q ss_pred             ch
Q 010200          248 SR  249 (515)
Q Consensus       248 S~  249 (515)
                      +.
T Consensus       192 ~~  193 (439)
T TIGR01813       192 GS  193 (439)
T ss_pred             CC
Confidence            87

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>TIGR02734 crtI_fam phytoene desaturase

Probab=98.96  E-value=2.3e-07  Score=98.24  Aligned_cols=64  Identities=17%  Similarity=0.207  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                      ..+.+.|.+.+++.| ++|+++++|++|..                   +++..+.|.+++|+++.+|.||.|.+....+
T Consensus       219 ~~l~~al~~~~~~~G-~~i~~~~~V~~i~~-------------------~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~  278 (502)
T TIGR02734       219 GALVAAMAKLAEDLG-GELRLNAEVIRIET-------------------EGGRATAVHLADGERLDADAVVSNADLHHTY  278 (502)
T ss_pred             HHHHHHHHHHHHHCC-CEEEECCeEEEEEe-------------------eCCEEEEEEECCCCEEECCEEEECCcHHHHH
Confidence            567889999999888 89999999999976                   1223467888888889999999999987766


Q ss_pred             hhhc
Q 010200          251 RELA  254 (515)
Q Consensus       251 r~~l  254 (515)
                      .+.+
T Consensus       279 ~~l~  282 (502)
T TIGR02734       279 RRLL  282 (502)
T ss_pred             HHhc
Confidence            5554

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK07121 hypothetical protein; Validated

Probab=98.95  E-value=1.9e-08  Score=105.96  Aligned_cols=39  Identities=33%  Similarity=0.457  Sum_probs=35.6

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      +..+||||||+|.|||++|+.+++.    |.+|+|+||....+
T Consensus        18 ~~~~DVvVVGaG~AGl~AA~~aae~----G~~VillEK~~~~g   56 (492)
T PRK07121         18 DDEADVVVVGFGAAGACAAIEAAAA----GARVLVLERAAGAG   56 (492)
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHC----CCeEEEEeCCCCCC
Confidence            4579999999999999999999996    99999999998754

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=98.93  E-value=1.3e-08  Score=108.76  Aligned_cols=64  Identities=17%  Similarity=0.145  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeE-EEcCCCc--EEEeeEEEEecCCC
Q 010200          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAK-LDLSDGT--SLYAKLVVGADGGK  247 (515)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~g~--~~~ad~vV~AdG~~  247 (515)
                      ..+...|.+.+.+.++++++.++.++++..+            ++     ...++. +...+|+  .+.|+.||+|||..
T Consensus       133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~------------~g-----~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~  195 (582)
T PRK09231        133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVD------------DG-----HVRGLVAMNMMEGTLVQIRANAVVMATGGA  195 (582)
T ss_pred             HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEe------------CC-----EEEEEEEEEcCCCcEEEEECCEEEECCCCC
Confidence            4688888888877655999999999999760            01     111222 2345664  68999999999999


Q ss_pred             chhh
Q 010200          248 SRVR  251 (515)
Q Consensus       248 S~vr  251 (515)
                      |.+.
T Consensus       196 ~~l~  199 (582)
T PRK09231        196 GRVY  199 (582)
T ss_pred             cCCC
Confidence            9874

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.93  E-value=9.4e-09  Score=108.82  Aligned_cols=115  Identities=27%  Similarity=0.406  Sum_probs=83.4

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhh
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (515)
                      ...+||+||||||||+++|+.|++.    |++|+|+|+.  ++              | .+. .      ..+       
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~la~~----G~~v~li~~~--~G--------------G-~~~-~------~~~-------  253 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYAARK----GIRTGIVAER--FG--------------G-QVL-D------TMG-------  253 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHC----CCcEEEEecC--CC--------------C-eee-c------cCc-------
Confidence            4469999999999999999999996    9999999764  21              1 000 0      000       


Q ss_pred             hhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCC
Q 010200          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (515)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~  212 (515)
                           +.     +.     ..++           .....++.+.|.+.+++.+ ++++.+++|.++..            
T Consensus       254 -----~~-----~~-----~~~~-----------~~~~~~l~~~l~~~~~~~g-v~i~~~~~V~~I~~------------  294 (517)
T PRK15317        254 -----IE-----NF-----ISVP-----------ETEGPKLAAALEEHVKEYD-VDIMNLQRASKLEP------------  294 (517)
T ss_pred             -----cc-----cc-----CCCC-----------CCCHHHHHHHHHHHHHHCC-CEEEcCCEEEEEEe------------
Confidence                 00     00     0000           1234578889999999988 99999999999976            


Q ss_pred             CCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200          213 PSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR  249 (515)
Q Consensus       213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~  249 (515)
                              ....+.+.+.+|.++.+|.||.|+|..+.
T Consensus       295 --------~~~~~~V~~~~g~~i~a~~vViAtG~~~r  323 (517)
T PRK15317        295 --------AAGLIEVELANGAVLKAKTVILATGARWR  323 (517)
T ss_pred             --------cCCeEEEEECCCCEEEcCEEEECCCCCcC
Confidence                    23457777788888999999999999763

>TIGR02731 phytoene_desat phytoene desaturase

Probab=98.93  E-value=6.8e-07  Score=93.37  Aligned_cols=69  Identities=20%  Similarity=0.241  Sum_probs=49.4

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCC--CCCCCCcE----EEeCHhHHHHHHHcCCchh
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKK--EDPPDPRV----STVTPATISFFKEIGAWQY  129 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~--~~~~~~~~----~~l~~~~~~~l~~lgl~~~  129 (515)
                      +|+|||||++||++|+.|++.    |++|+|||+.+.++.+.+...  .+.....|    ....++..++++++|+.+.
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~----G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~   75 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADA----GHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDR   75 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHC----CCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccc
Confidence            589999999999999999996    999999999998865433211  11111112    1224778899999998543

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=98.91  E-value=2.6e-08  Score=106.39  Aligned_cols=64  Identities=17%  Similarity=0.148  Sum_probs=46.0

Q ss_pred             hHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeE-EEcCCCc--EEEeeEEEEecCC
Q 010200          170 NKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAK-LDLSDGT--SLYAKLVVGADGG  246 (515)
Q Consensus       170 r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~g~--~~~ad~vV~AdG~  246 (515)
                      -..+.+.|.+.+.+.++++++.++.++++..+            ++     ...++. +...+|+  .+.|+.||+|||.
T Consensus       131 G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~------------~g-----~v~Gv~~~~~~~g~~~~i~AkaVILATGG  193 (580)
T TIGR01176       131 GFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD------------DG-----RVCGLVAIEMAEGRLVTILADAVVLATGG  193 (580)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEeCeEEEEEEee------------CC-----EEEEEEEEEcCCCcEEEEecCEEEEcCCC
Confidence            35788999988877655999999999999761            01     111222 2334664  6899999999999


Q ss_pred             Cchh
Q 010200          247 KSRV  250 (515)
Q Consensus       247 ~S~v  250 (515)
                      .+.+
T Consensus       194 ~~~~  197 (580)
T TIGR01176       194 AGRV  197 (580)
T ss_pred             Cccc
Confidence            9975

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=1.2e-08  Score=99.19  Aligned_cols=115  Identities=22%  Similarity=0.239  Sum_probs=78.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcE-EEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLS-VAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~-V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (515)
                      +.+||+|||||||||++|+.++|+    +++ ++|+|+.. +               +..+           ..      
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r~----~l~~~li~~~~~-~---------------gg~~-----------~~------   44 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARA----GLKVVLILEGGE-P---------------GGQL-----------TK------   44 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHHc----CCCcEEEEecCC-c---------------CCcc-----------cc------
Confidence            569999999999999999999997    888 66666654 2               1000           00      


Q ss_pred             hhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCC
Q 010200          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (515)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~  212 (515)
                            .. .+.+             ++...  -.+.-.+|.+.+.+.+...+ +++.. ..|..++.            
T Consensus        45 ------~~-~ven-------------ypg~~--~~~~g~~L~~~~~~~a~~~~-~~~~~-~~v~~v~~------------   88 (305)
T COG0492          45 ------TT-DVEN-------------YPGFP--GGILGPELMEQMKEQAEKFG-VEIVE-DEVEKVEL------------   88 (305)
T ss_pred             ------ce-eecC-------------CCCCc--cCCchHHHHHHHHHHHhhcC-eEEEE-EEEEEEee------------
Confidence                  00 0000             00000  12445678888888888777 78777 67777764            


Q ss_pred             CCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200          213 PSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                              .+...+|.++++. ++||.||.|+|....-
T Consensus        89 --------~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~  117 (305)
T COG0492          89 --------EGGPFKVKTDKGT-YEAKAVIIATGAGARK  117 (305)
T ss_pred             --------cCceEEEEECCCe-EEEeEEEECcCCcccC
Confidence                    2226888888887 9999999999987654

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.90  E-value=1.3e-08  Score=106.44  Aligned_cols=158  Identities=16%  Similarity=0.185  Sum_probs=94.2

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC-CCCCCCCCCCCCCCcEEEeCHhHHHHHHHcC-Cchhhhhh
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL-GKSNFIKKEDPPDPRVSTVTPATISFFKEIG-AWQYVQQH  133 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lg-l~~~~~~~  133 (515)
                      |||+|||||+||+.+|..+++.    |.+|+|+|+.... +..+|.     +...|..-. ...+-++.+| ....+.+.
T Consensus         1 yDViVIGaG~AGl~aA~ala~~----G~~v~Lie~~~~~~g~~~c~-----ps~gG~a~g-~l~rEidaLGG~~~~~~d~   70 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARM----GAKTLLLTLNLDTIGKCSCN-----PAIGGPAKG-ILVKEIDALGGLMGKAADK   70 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHC----CCCEEEEecccccccCCCcc-----ccccccccc-hhhhhhhcccchHHHHHHh
Confidence            6999999999999999999996    8999999997542 222331     111111000 1122233332 11222111


Q ss_pred             hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (515)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~  213 (515)
                      ..   ..+..........+         ......+++..+...+.+.+++.++++++.+ .|+++..         +   
T Consensus        71 ~~---i~~r~ln~skgpAV---------~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~---------e---  125 (617)
T TIGR00136        71 AG---LQFRVLNSSKGPAV---------RATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLIL---------E---  125 (617)
T ss_pred             hc---eeheecccCCCCcc---------cccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEE---------e---
Confidence            11   01111111000000         0111367899999999999999976888765 7888764         0   


Q ss_pred             CcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhc
Q 010200          214 SATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELA  254 (515)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l  254 (515)
                            +++....|.+.+|..+.|+.||.|+|.+..-+-++
T Consensus       126 ------~~g~V~GV~t~~G~~I~Ad~VILATGtfL~g~ihi  160 (617)
T TIGR00136       126 ------DNDEIKGVVTQDGLKFRAKAVIITTGTFLRGKIHI  160 (617)
T ss_pred             ------cCCcEEEEEECCCCEEECCEEEEccCcccCCCEEe
Confidence                  02244567778888999999999999997544444

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>TIGR00551 nadB L-aspartate oxidase

Probab=98.90  E-value=2.1e-08  Score=105.42  Aligned_cols=65  Identities=15%  Similarity=0.160  Sum_probs=46.4

Q ss_pred             hHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCC-C--cEEEeeEEEEecCC
Q 010200          170 NKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD-G--TSLYAKLVVGADGG  246 (515)
Q Consensus       170 r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-g--~~~~ad~vV~AdG~  246 (515)
                      -..+...|.+.+.+..+++|++++.|+++..+                   ++....+...+ +  ..+.++.||.|+|.
T Consensus       127 G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~-------------------~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG  187 (488)
T TIGR00551       127 GREVITTLVKKALNHPNIRIIEGENALDLLIE-------------------TGRVVGVWVWNRETVETCHADAVVLATGG  187 (488)
T ss_pred             HHHHHHHHHHHHHhcCCcEEEECeEeeeeecc-------------------CCEEEEEEEEECCcEEEEEcCEEEECCCc
Confidence            35788999999987434999999999999750                   11222233222 2  36899999999999


Q ss_pred             Cchhhhh
Q 010200          247 KSRVREL  253 (515)
Q Consensus       247 ~S~vr~~  253 (515)
                      +|.+...
T Consensus       188 ~~~~~~~  194 (488)
T TIGR00551       188 AGKLYQY  194 (488)
T ss_pred             ccCCCCC
Confidence            9986543

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.86  E-value=3e-08  Score=106.20  Aligned_cols=62  Identities=19%  Similarity=0.211  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeE-EEcCCCc--EEEeeEEEEecCCC
Q 010200          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAK-LDLSDGT--SLYAKLVVGADGGK  247 (515)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~g~--~~~ad~vV~AdG~~  247 (515)
                      ..+...|.+.+.+.+ ++++.++.|+++..+            ++     ...++. +...+|+  .+.|+.||.|+|.+
T Consensus       135 ~~i~~~L~~~~~~~g-i~i~~~t~v~~L~~~------------~g-----~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~  196 (575)
T PRK05945        135 HAILHELVNNLRRYG-VTIYDEWYVMRLILE------------DN-----QAKGVVMYHIADGRLEVVRAKAVMFATGGY  196 (575)
T ss_pred             HHHHHHHHHHHhhCC-CEEEeCcEEEEEEEE------------CC-----EEEEEEEEEcCCCeEEEEECCEEEECCCCC
Confidence            578888999888877 999999999999750            00     111222 2334554  68999999999999


Q ss_pred             chh
Q 010200          248 SRV  250 (515)
Q Consensus       248 S~v  250 (515)
                      +.+
T Consensus       197 ~~~  199 (575)
T PRK05945        197 GRV  199 (575)
T ss_pred             cCC
Confidence            875

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.86  E-value=1.5e-08  Score=104.66  Aligned_cols=63  Identities=21%  Similarity=0.237  Sum_probs=44.1

Q ss_pred             chHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEE-cCCCc--EEEeeEEEEecC
Q 010200          169 ENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLD-LSDGT--SLYAKLVVGADG  245 (515)
Q Consensus       169 ~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~g~--~~~ad~vV~AdG  245 (515)
                      ....+...|.+.+++.| ++|+++++++++..+            ++     ...++.+. ..+|+  ++.|+.||.|+|
T Consensus       139 ~g~~~~~~l~~~~~~~g-v~i~~~~~~~~Li~e------------~g-----~V~Gv~~~~~~~g~~~~i~A~aVIlAtG  200 (417)
T PF00890_consen  139 GGKALIEALAKAAEEAG-VDIRFNTRVTDLITE------------DG-----RVTGVVAENPADGEFVRIKAKAVILATG  200 (417)
T ss_dssp             HHHHHHHHHHHHHHHTT-EEEEESEEEEEEEEE------------TT-----EEEEEEEEETTTCEEEEEEESEEEE---
T ss_pred             cHHHHHHHHHHHHhhcC-eeeeccceeeeEEEe------------CC-----ceeEEEEEECCCCeEEEEeeeEEEeccC
Confidence            45788999999999999 999999999999871            00     22233343 23454  688999999999


Q ss_pred             CCch
Q 010200          246 GKSR  249 (515)
Q Consensus       246 ~~S~  249 (515)
                      ..+.
T Consensus       201 G~~~  204 (417)
T PF00890_consen  201 GFGG  204 (417)
T ss_dssp             -BGG
T ss_pred             cccc
Confidence            9995

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.86  E-value=2e-08  Score=105.53  Aligned_cols=146  Identities=18%  Similarity=0.168  Sum_probs=83.5

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      -+|+|||||++||++|..|.+.    |++|++|||.+..+.-.... +....+.              -.+++.+..   
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~----g~~~~~fE~~~~iGG~W~~~-~~~~~g~--------------~~~y~sl~~---   59 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEE----GLEVTCFEKSDDIGGLWRYT-ENPEDGR--------------SSVYDSLHT---   59 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHT----T-EEEEEESSSSSSGGGCHS-TTCCCSE--------------GGGSTT-B----
T ss_pred             CEEEEECccHHHHHHHHHHHHC----CCCCeEEecCCCCCccCeeC-CcCCCCc--------------cccccceEE---
Confidence            3699999999999999999996    99999999999885222100 0000000              001111111   


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCC-ceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEF-QKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~-v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                                ........|..-..+...+ -..++.++.++|.+.++..+- -.|+++++|++++..         .+. 
T Consensus        60 ----------n~sk~~~~fsdfp~p~~~p-~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~---------~d~-  118 (531)
T PF00743_consen   60 ----------NTSKEMMAFSDFPFPEDYP-DFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERD---------PDF-  118 (531)
T ss_dssp             ----------SS-GGGSCCTTS-HCCCCS-SSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEE---------TTT-
T ss_pred             ----------eeCchHhcCCCcCCCCCCC-CCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeec---------ccc-
Confidence                      0011111111100111111 136789999999999987751 369999999999871         111 


Q ss_pred             cccccccCCeeEEEcCC-Cc--EEEeeEEEEecCCCch
Q 010200          215 ATTLFTKGHLAKLDLSD-GT--SLYAKLVVGADGGKSR  249 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~-g~--~~~ad~vV~AdG~~S~  249 (515)
                           .....|+|++.+ |+  +..+|.||.|+|.++.
T Consensus       119 -----~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~  151 (531)
T PF00743_consen  119 -----SATGKWEVTTENDGKEETEEFDAVVVATGHFSK  151 (531)
T ss_dssp             -----T-ETEEEEEETTTTEEEEEEECEEEEEE-SSSC
T ss_pred             -----CCCceEEEEeecCCeEEEEEeCeEEEcCCCcCC
Confidence                 122467887754 33  4568999999999874

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.86  E-value=3.2e-08  Score=106.13  Aligned_cols=40  Identities=33%  Similarity=0.547  Sum_probs=35.1

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCC---cEEEEEcCCCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKH---LSVAIIDSNPALGK   96 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G---~~V~v~E~~~~~~~   96 (515)
                      ..++||+|||||+|||++|+.+++.    |   .+|+|+||....+.
T Consensus         3 ~~~~DVlVVG~G~AGl~AA~~Aa~~----G~~~~~V~lleK~~~~~~   45 (577)
T PRK06069          3 VLKYDVVIVGSGLAGLRAAVAAAER----SGGKLSVAVVSKTQPMRS   45 (577)
T ss_pred             ceecCEEEECccHHHHHHHHHHHHh----CCCCCcEEEEEcccCCCC
Confidence            3468999999999999999999996    6   89999999986643

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=98.84  E-value=2.7e-08  Score=106.70  Aligned_cols=64  Identities=20%  Similarity=0.112  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEE-EcCCCc--EEEeeEEEEecCCC
Q 010200          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKL-DLSDGT--SLYAKLVVGADGGK  247 (515)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~g~--~~~ad~vV~AdG~~  247 (515)
                      ..+...|.+.+.+.| +++++++.++++..+            ++     ...++.+ ...+|+  .+.|+.||.|+|.+
T Consensus       129 ~~i~~~L~~~~~~~g-v~i~~~~~v~~L~~~------------~g-----~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~  190 (566)
T TIGR01812       129 HALLHTLYEQCLKLG-VSFFNEYFALDLIHD------------DG-----RVRGVVAYDLKTGEIVFFRAKAVVLATGGY  190 (566)
T ss_pred             HHHHHHHHHHHHHcC-CEEEeccEEEEEEEe------------CC-----EEEEEEEEECCCCcEEEEECCeEEECCCcc
Confidence            467888888888887 999999999999760            01     1112222 234564  68999999999999


Q ss_pred             chhhh
Q 010200          248 SRVRE  252 (515)
Q Consensus       248 S~vr~  252 (515)
                      +.+..
T Consensus       191 ~~~~~  195 (566)
T TIGR01812       191 GRIYK  195 (566)
T ss_pred             cCCCC
Confidence            97654

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.84  E-value=2.2e-08  Score=105.87  Aligned_cols=114  Identities=25%  Similarity=0.299  Sum_probs=81.0

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhh
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (515)
                      ...+||+||||||||+++|+.|++.    |++|+|+|..  ++              |....        ..        
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~----G~~v~li~~~--~G--------------G~~~~--------~~--------  253 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARK----GLRTAMVAER--IG--------------GQVKD--------TV--------  253 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHC----CCcEEEEecC--CC--------------Ccccc--------Cc--------
Confidence            4569999999999999999999996    9999999743  21              00000        00        


Q ss_pred             hhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCC
Q 010200          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (515)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~  212 (515)
                          .+..  +        ...       .    .....++...+.+.+++.+ ++++.+++|+++..            
T Consensus       254 ----~~~~--~--------~~~-------~----~~~~~~l~~~l~~~l~~~g-v~i~~~~~V~~I~~------------  295 (515)
T TIGR03140       254 ----GIEN--L--------ISV-------P----YTTGSQLAANLEEHIKQYP-IDLMENQRAKKIET------------  295 (515)
T ss_pred             ----Cccc--c--------ccc-------C----CCCHHHHHHHHHHHHHHhC-CeEEcCCEEEEEEe------------
Confidence                0000  0        000       0    0234567788888888887 99999999999975            


Q ss_pred             CCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCc
Q 010200          213 PSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKS  248 (515)
Q Consensus       213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S  248 (515)
                              ..+.+.+..++|.++.+|.||.|+|...
T Consensus       296 --------~~~~~~v~~~~g~~i~~d~lIlAtGa~~  323 (515)
T TIGR03140       296 --------EDGLIVVTLESGEVLKAKSVIVATGARW  323 (515)
T ss_pred             --------cCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence                    3345677778888899999999999874

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=98.83  E-value=1.2e-07  Score=89.64  Aligned_cols=201  Identities=14%  Similarity=0.114  Sum_probs=105.7

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCC--CCC---CCCCCCcEEEeCHhHHHHHH----Hc
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNF--IKK---EDPPDPRVSTVTPATISFFK----EI  124 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~~~l~----~l  124 (515)
                      .+.||+|||||..|++.|+.|++.-...|++|+|+||+.......-  .++   .......-+.++--+.++|+    .+
T Consensus        85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFSlpEnIqmSLF~a~Flr~a~ehl  164 (509)
T KOG2853|consen   85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFSLPENIQMSLFTAEFLRNAREHL  164 (509)
T ss_pred             cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeecccchhhhhhhHHHHHHHHHHHhh
Confidence            4679999999999999999998643335899999999986532210  000   00011111222222333443    23


Q ss_pred             CCchhhh-hhhccccceEEEEe-------------------------CCCccceeeecccCCCCcce-------EEechH
Q 010200          125 GAWQYVQ-QHRHAYFDKMQVWD-------------------------YTGLGYTKYNARDVNKEILG-------CVVENK  171 (515)
Q Consensus       125 gl~~~~~-~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~-------~~i~r~  171 (515)
                      ++.+.-. ...+.+...+.+-.                         .+. ....|++-.+..-..+       -.++.-
T Consensus       165 ~~~d~~~vdl~f~P~GyL~LA~ee~ae~m~s~~kvQ~e~GAk~eLls~d~-Lt~rfPwlntegVaLa~lG~e~EGwfdpw  243 (509)
T KOG2853|consen  165 GILDSEQVDLNFFPTGYLRLASEEEAEMMRSNSKVQNELGAKVELLSPDE-LTKRFPWLNTEGVALASLGVEKEGWFDPW  243 (509)
T ss_pred             ccccCCCCCcccCCCceEEEcchhhHHHHHHhHHHHHhhcchhcccCHHH-HhhhCCcccccceeeeecccccccccCHH
Confidence            3321100 00111111111110                         000 0011222111111111       135677


Q ss_pred             HHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCc--EEEeeEEEEecCCCch
Q 010200          172 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT--SLYAKLVVGADGGKSR  249 (515)
Q Consensus       172 ~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~--~~~ad~vV~AdG~~S~  249 (515)
                      .|...+++.+..+| +++.-| +|++++...+........+....---+.-.++.|...|+.  +++++++|.|.|+||-
T Consensus       244 ~LLs~~rrk~~~lG-v~f~~G-eV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAGa~s~  321 (509)
T KOG2853|consen  244 ALLSGIRRKAITLG-VQFVKG-EVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAGAWSG  321 (509)
T ss_pred             HHHHHHHHHhhhhc-ceEecc-eEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEeccCccHH
Confidence            88899999999998 888766 9999998555433222222110000012245667766653  7999999999999996


Q ss_pred             h-hhhcCCc
Q 010200          250 V-RELAGFK  257 (515)
Q Consensus       250 v-r~~l~~~  257 (515)
                      . .+..|+.
T Consensus       322 QvArlAgIG  330 (509)
T KOG2853|consen  322 QVARLAGIG  330 (509)
T ss_pred             HHHHHhccC
Confidence            4 4444443

>PLN02268 probable polyamine oxidase

Probab=98.82  E-value=1.1e-06  Score=91.44  Aligned_cols=66  Identities=24%  Similarity=0.386  Sum_probs=46.6

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCC--CCCCCCcEEEe-----CHhHHHHHHHcCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKK--EDPPDPRVSTV-----TPATISFFKEIGA  126 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~--~~~~~~~~~~l-----~~~~~~~l~~lgl  126 (515)
                      +|+|||||++||++|+.|.+.    |++|+|+|+++.++.+.+...  +......+..+     .....++++++|+
T Consensus         2 ~VvVIGaGisGL~aA~~L~~~----g~~v~vlEa~~r~GGri~t~~~~g~~~d~G~~~i~~~~~~~~~~~l~~~lgl   74 (435)
T PLN02268          2 SVIVIGGGIAGIAAARALHDA----SFKVTLLESRDRIGGRVHTDYSFGFPVDMGASWLHGVCNENPLAPLIGRLGL   74 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHhC----CCeEEEEeCCCCCCceeeecCcCCcccCCCCeeEeccCCCchHHHHHHHhCC
Confidence            799999999999999999996    999999999999876654211  11111122222     2224577888887

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=98.82  E-value=1.3e-08  Score=109.49  Aligned_cols=38  Identities=29%  Similarity=0.366  Sum_probs=34.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      ..+||+|||||+|||++|+.+++.    |.+|+|+||....+
T Consensus        49 ~~~DVlVIG~G~AGl~AAl~Aae~----G~~VilveK~~~~~   86 (635)
T PLN00128         49 HTYDAVVVGAGGAGLRAAIGLSEH----GFNTACITKLFPTR   86 (635)
T ss_pred             eecCEEEECccHHHHHHHHHHHhc----CCcEEEEEcCCCCC
Confidence            468999999999999999999996    99999999987654

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.81  E-value=4.8e-08  Score=104.14  Aligned_cols=114  Identities=18%  Similarity=0.335  Sum_probs=76.8

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      +.|||+|||||||||++|+.|++.    |++|+|||+.. .+              |......            .    
T Consensus         3 ~~yDVvIIGgGpAGL~AA~~lar~----g~~V~liE~~~-~G--------------G~~~~~~------------~----   47 (555)
T TIGR03143         3 EIYDLIIIGGGPAGLSAGIYAGRA----KLDTLIIEKDD-FG--------------GQITITS------------E----   47 (555)
T ss_pred             CcCcEEEECCCHHHHHHHHHHHHC----CCCEEEEecCC-CC--------------ceEEecc------------c----
Confidence            459999999999999999999996    99999999864 21              1110000            0    


Q ss_pred             hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (515)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~  213 (515)
                             +  .+..+.                ..+....+.+.+.+.+.+.+ ++++ +++|+.+..             
T Consensus        48 -------i--~~~pg~----------------~~~~~~~l~~~l~~~~~~~g-v~~~-~~~V~~i~~-------------   87 (555)
T TIGR03143        48 -------V--VNYPGI----------------LNTTGPELMQEMRQQAQDFG-VKFL-QAEVLDVDF-------------   87 (555)
T ss_pred             -------c--ccCCCC----------------cCCCHHHHHHHHHHHHHHcC-CEEe-ccEEEEEEe-------------
Confidence                   0  000000                01234567778888888877 8876 678888865             


Q ss_pred             CcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200          214 SATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                             ....+.+...++ ++.++.||.|+|++...
T Consensus        88 -------~~~~~~V~~~~g-~~~a~~lVlATGa~p~~  116 (555)
T TIGR03143        88 -------DGDIKTIKTARG-DYKTLAVLIATGASPRK  116 (555)
T ss_pred             -------cCCEEEEEecCC-EEEEeEEEECCCCccCC
Confidence                   223456666555 58999999999997653

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK08401 L-aspartate oxidase; Provisional

Probab=98.81  E-value=1.2e-08  Score=106.55  Aligned_cols=60  Identities=23%  Similarity=0.163  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                      ..+.+.|.+.+++.| ++++.+ .++.+..                   +++..+.+.. ++..+.++.||.|+|.+|.+
T Consensus       120 ~~i~~~L~~~~~~~g-v~i~~~-~v~~l~~-------------------~~g~v~Gv~~-~g~~i~a~~VVLATGG~~~~  177 (466)
T PRK08401        120 KHIIKILYKHARELG-VNFIRG-FAEELAI-------------------KNGKAYGVFL-DGELLKFDATVIATGGFSGL  177 (466)
T ss_pred             HHHHHHHHHHHHhcC-CEEEEe-EeEEEEe-------------------eCCEEEEEEE-CCEEEEeCeEEECCCcCcCC
Confidence            568899999998887 898876 7888764                   0112233443 56679999999999999987


Q ss_pred             hh
Q 010200          251 RE  252 (515)
Q Consensus       251 r~  252 (515)
                      ..
T Consensus       178 ~~  179 (466)
T PRK08401        178 FK  179 (466)
T ss_pred             CC
Confidence            54

>PLN02576 protoporphyrinogen oxidase

Probab=98.81  E-value=2e-06  Score=90.94  Aligned_cols=41  Identities=37%  Similarity=0.558  Sum_probs=35.8

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS   97 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~   97 (515)
                      .++||+|||||++||++|+.|++.   .|++|+|+|+++.++.+
T Consensus        11 ~~~~v~IIGaGisGL~aA~~L~~~---~g~~v~vlEa~~rvGGr   51 (496)
T PLN02576         11 SSKDVAVVGAGVSGLAAAYALASK---HGVNVLVTEARDRVGGN   51 (496)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHh---cCCCEEEEecCCCCCCc
Confidence            457999999999999999999994   17999999999988644

>PRK06175 L-aspartate oxidase; Provisional

Probab=98.80  E-value=2.8e-08  Score=102.65  Aligned_cols=37  Identities=24%  Similarity=0.349  Sum_probs=32.6

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      ..+||||||+|.|||++|+.+++     |.+|+|+||.+..+
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a~~-----G~~V~lleK~~~~g   39 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNLRK-----DLKILMVSKGKLNE   39 (433)
T ss_pred             ccccEEEECchHHHHHHHHHhcc-----CCCEEEEecCCCCC
Confidence            46899999999999999999853     89999999988653

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=98.80  E-value=5.9e-08  Score=104.32  Aligned_cols=39  Identities=26%  Similarity=0.426  Sum_probs=33.8

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ..+||+|||||+|||++|+.+++.+  +|.+|+|+||....
T Consensus        10 ~~~DVlVIG~G~AGl~AAi~Aae~~--~G~~V~lieK~~~~   48 (608)
T PRK06854         10 VDTDILIIGGGMAGCGAAFEAKEWA--PDLKVLIVEKANIK   48 (608)
T ss_pred             eEeCEEEECcCHHHHHHHHHHHHhC--CCCeEEEEECCCcC
Confidence            4589999999999999999999841  18999999998864

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.80  E-value=4e-08  Score=102.95  Aligned_cols=56  Identities=16%  Similarity=0.172  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCC
Q 010200          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGG  246 (515)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~  246 (515)
                      ..+.++|.+.+++.| ++|+++++|++|..                   +++..+++...+|+.+++|.||.+...
T Consensus       224 ~al~~aL~~~~~~~G-g~I~~~~~V~~I~v-------------------~~g~g~~~~~~~g~~~~ad~vv~~~~~  279 (487)
T COG1233         224 GALVDALAELAREHG-GEIRTGAEVSQILV-------------------EGGKGVGVRTSDGENIEADAVVSNADP  279 (487)
T ss_pred             HHHHHHHHHHHHHcC-CEEECCCceEEEEE-------------------eCCcceEEeccccceeccceeEecCch
Confidence            578899999999998 99999999999987                   133467888888877999999988776

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.80  E-value=7.7e-08  Score=103.17  Aligned_cols=39  Identities=33%  Similarity=0.457  Sum_probs=34.5

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      ...+||+|||||+|||++|+.+++.    |.+|+|+||....+
T Consensus        10 ~~~~DVlVIG~G~AGl~AAi~Aa~~----G~~V~vleK~~~~~   48 (591)
T PRK07057         10 RRKFDVVIVGAGGSGMRASLQLARA----GLSVAVLSKVFPTR   48 (591)
T ss_pred             cccCCEEEECccHHHHHHHHHHHHC----CCcEEEEeccCCCC
Confidence            3568999999999999999999996    89999999986543

>PLN02487 zeta-carotene desaturase

Probab=98.79  E-value=3.2e-06  Score=89.52  Aligned_cols=73  Identities=23%  Similarity=0.307  Sum_probs=51.5

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCC--CCCCCCCCCcEEE----eCHhHHHHHHHcCCch
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNF--IKKEDPPDPRVST----VTPATISFFKEIGAWQ  128 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~--~~~~~~~~~~~~~----l~~~~~~~l~~lgl~~  128 (515)
                      ..+|+|||||++||++|+.|++.    |++|+|||+.+.++....  ....+.....|..    ..++..++++++|+.+
T Consensus        75 ~~~v~iiG~G~~Gl~~a~~L~~~----g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~  150 (569)
T PLN02487         75 KLKVAIIGAGLAGMSTAVELLDQ----GHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADE  150 (569)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhC----CCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCcc
Confidence            46999999999999999999996    999999999998753211  0001111111221    2467889999999876


Q ss_pred             hhh
Q 010200          129 YVQ  131 (515)
Q Consensus       129 ~~~  131 (515)
                      .+.
T Consensus       151 ~~~  153 (569)
T PLN02487        151 NLL  153 (569)
T ss_pred             ccc
Confidence            653

>PLN02815 L-aspartate oxidase

Probab=98.78  E-value=1.1e-07  Score=101.41  Aligned_cols=40  Identities=28%  Similarity=0.496  Sum_probs=35.0

Q ss_pred             CCCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      .....+||+|||+|.|||++|+.+++.    | +|+|+||.+..+
T Consensus        25 ~~~~~~DVlVVG~G~AGl~AAl~Aae~----G-~VvlleK~~~~g   64 (594)
T PLN02815         25 ESTKYFDFLVIGSGIAGLRYALEVAEY----G-TVAIITKDEPHE   64 (594)
T ss_pred             CcccccCEEEECccHHHHHHHHHHhhC----C-CEEEEECCCCCC
Confidence            344568999999999999999999996    8 899999998754

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.78  E-value=4.7e-08  Score=98.15  Aligned_cols=122  Identities=16%  Similarity=0.178  Sum_probs=77.8

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      .||+|||||++|+.+|+.|++.    |++|+|+|+++........  ......+....+..+...+...|++..-...  
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~----Gl~V~LiE~rp~~~s~a~~--~~~~~ervca~Slgs~~ll~a~Gll~~em~~--   74 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKR----GVPVELYEMRPVKKTPAHH--TDGFAELVCSNSFRSDSLTNAVGLLKEEMRR--   74 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhC----CCcEEEEEccCccCccccc--CccccccccchhhhhhhHHhcCCchHHHHHH--
Confidence            5899999999999999999996    9999999988765321100  0001123334555666777888887632221  


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcce-EEechHHHHHHHHHHHhcCCCceEEcCCeeEEE
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILG-CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSM  198 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i  198 (515)
                        ...+.+... .         ....+..+ ..++|..+.+.|.+.+++.++++++ ..+|+++
T Consensus        75 --lgsl~~~aa-d---------~~~vPA~gaLvvdR~~~~~~L~~~L~~~pnI~l~-~~eV~~l  125 (436)
T PRK05335         75 --LGSLIMEAA-D---------AHRVPAGGALAVDREGFSEYVTEALENHPLITVI-REEVTEI  125 (436)
T ss_pred             --hcchheecc-c---------ccCCCCccceecCHHHHHHHHHHHHHcCCCcEEE-ccchhcc
Confidence              111111110 0         00111222 4688999999999999998888988 4577776

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=98.77  E-value=1.1e-07  Score=98.83  Aligned_cols=44  Identities=20%  Similarity=0.274  Sum_probs=36.8

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS   97 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~   97 (515)
                      ...+|+|||||+|||++|+.|++.+-.+|.+|+|||+.+.++.+
T Consensus        21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~   64 (576)
T PRK13977         21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGS   64 (576)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCC
Confidence            45789999999999999999998532247899999999987644

>PRK08275 putative oxidoreductase; Provisional

Probab=98.77  E-value=8.7e-08  Score=102.23  Aligned_cols=39  Identities=23%  Similarity=0.333  Sum_probs=34.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ..+||+|||||+|||++|+.+++.+  .|.+|+|+||.+..
T Consensus         8 ~~~DVlVIG~G~AGl~AAi~aa~~g--~g~~VilveK~~~~   46 (554)
T PRK08275          8 VETDILVIGGGTAGPMAAIKAKERN--PALRVLLLEKANVK   46 (554)
T ss_pred             EecCEEEECcCHHHHHHHHHHHHhC--CCCeEEEEeCCCCC
Confidence            4689999999999999999999852  27899999999864

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.77  E-value=6.5e-08  Score=100.63  Aligned_cols=33  Identities=33%  Similarity=0.427  Sum_probs=31.4

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN   91 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~   91 (515)
                      +|||+||||||+|+++|+.+++.    |++|+|+|+.
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~----G~~V~lie~~   34 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANH----GAKVAIAEEP   34 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhC----CCcEEEEecC
Confidence            59999999999999999999996    9999999985

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK12839 hypothetical protein; Provisional

Probab=98.76  E-value=5.7e-08  Score=103.54  Aligned_cols=42  Identities=29%  Similarity=0.435  Sum_probs=36.9

Q ss_pred             CCCCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           50 TNNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        50 ~~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      ++++..+||+|||+|++|+++|+.|++.    |.+|+|+||....+
T Consensus         3 ~~~~~~~dv~ViG~G~aG~~aa~~~~~~----g~~v~~iek~~~~g   44 (572)
T PRK12839          3 PSMTHTYDVVVVGSGAGGLSAAVAAAYG----GAKVLVVEKASTCG   44 (572)
T ss_pred             CCcCCcCCEEEECcCHHHHHHHHHHHHC----CCcEEEEecCCCCC
Confidence            3455679999999999999999999996    99999999987654

>PLN02568 polyamine oxidase

Probab=98.76  E-value=2.2e-06  Score=90.68  Aligned_cols=46  Identities=15%  Similarity=0.400  Sum_probs=37.3

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCC-CCCcEEEEEcCCCCCCCC
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPL-TKHLSVAIIDSNPALGKS   97 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~-~~G~~V~v~E~~~~~~~~   97 (515)
                      +++..||+|||||++||++|..|++.+. ..|++|+|||++..++.+
T Consensus         2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr   48 (539)
T PLN02568          2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGR   48 (539)
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCe
Confidence            4456899999999999999999998620 124999999999988644

>PLN02676 polyamine oxidase

Probab=98.76  E-value=4.2e-06  Score=87.72  Aligned_cols=40  Identities=25%  Similarity=0.496  Sum_probs=35.4

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPALGKS   97 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~~~~~   97 (515)
                      ..+||+|||||++||++|+.|++.    |+ +|+|+|++..++..
T Consensus        25 ~~~~v~IIGaG~sGL~aa~~L~~~----g~~~v~vlE~~~~~GG~   65 (487)
T PLN02676         25 PSPSVIIVGAGMSGISAAKTLSEA----GIEDILILEATDRIGGR   65 (487)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHc----CCCcEEEecCCCCCCCc
Confidence            357999999999999999999996    87 69999999987644

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.75  E-value=1e-07  Score=101.68  Aligned_cols=38  Identities=34%  Similarity=0.532  Sum_probs=34.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      ..+||+|||||.|||++|+.+++.    |.+|+|+||.+..+
T Consensus         4 ~~~DVvVVG~G~AGl~AAl~Aae~----G~~V~lveK~~~~~   41 (566)
T PRK06452          4 IEYDAVVIGGGLAGLMSAHEIASA----GFKVAVISKVFPTR   41 (566)
T ss_pred             ccCcEEEECccHHHHHHHHHHHHC----CCcEEEEEccCCCC
Confidence            468999999999999999999996    99999999987543

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.75  E-value=5.8e-08  Score=104.79  Aligned_cols=37  Identities=27%  Similarity=0.482  Sum_probs=33.7

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      .++||+|||||.|||++|+.+++.    |.+|+|+||...+
T Consensus        34 ~~~DVlVVG~G~AGl~AAi~Aae~----G~~VilieK~~~~   70 (640)
T PRK07573         34 RKFDVIVVGTGLAGASAAATLGEL----GYNVKVFCYQDSP   70 (640)
T ss_pred             cccCEEEECccHHHHHHHHHHHHc----CCcEEEEecCCCC
Confidence            468999999999999999999996    9999999997655

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=98.75  E-value=4e-06  Score=87.72  Aligned_cols=71  Identities=21%  Similarity=0.245  Sum_probs=48.6

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCC--CCCCCCCCcEE----EeCHhHHHHHHHcCCchhh
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFI--KKEDPPDPRVS----TVTPATISFFKEIGAWQYV  130 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~--~~~~~~~~~~~----~l~~~~~~~l~~lgl~~~~  130 (515)
                      +|+|||||++||++|+.|++.    |++|+|+|+.+.++.+...  ...+.....|.    ...++..++++++|+.+.+
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~----G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~~   76 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDA----GHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDNL   76 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHC----CCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCcccc
Confidence            589999999999999999996    9999999999987543211  01111111111    1246677888888886654


Q ss_pred             h
Q 010200          131 Q  131 (515)
Q Consensus       131 ~  131 (515)
                      .
T Consensus        77 ~   77 (474)
T TIGR02732        77 L   77 (474)
T ss_pred             c
Confidence            3

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.74  E-value=2.1e-07  Score=100.38  Aligned_cols=38  Identities=29%  Similarity=0.364  Sum_probs=34.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      ..+||||||||+|||++|+.+++.    |.+|+|+||....+
T Consensus         7 ~~~DVvVIG~G~AGl~AAl~Aae~----G~~V~lieK~~~~~   44 (626)
T PRK07803          7 HSYDVVVIGAGGAGLRAAIEARER----GLRVAVVCKSLFGK   44 (626)
T ss_pred             eeecEEEECcCHHHHHHHHHHHHC----CCCEEEEeccCCCC
Confidence            468999999999999999999996    99999999987553

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.74  E-value=6.8e-08  Score=101.08  Aligned_cols=38  Identities=24%  Similarity=0.376  Sum_probs=34.1

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      +.+|||+||||||+|+.+|..|++.    |++|+|+|+.+..
T Consensus         2 ~~~~DvvVIG~GpaG~~aA~~aa~~----G~~V~lie~~~~~   39 (471)
T PRK06467          2 EIKTQVVVLGAGPAGYSAAFRAADL----GLETVCVERYSTL   39 (471)
T ss_pred             CccceEEEECCCHHHHHHHHHHHHC----CCcEEEEecCCcc
Confidence            3469999999999999999999996    9999999997644

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.74  E-value=8.4e-08  Score=100.40  Aligned_cols=38  Identities=29%  Similarity=0.421  Sum_probs=34.6

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      +..|||+||||||+|+++|+.|++.    |++|+|+|+...+
T Consensus         3 ~~~yDvvVIGaGpaG~~aA~~la~~----G~~v~liE~~~~~   40 (461)
T PRK05249          3 MYDYDLVVIGSGPAGEGAAMQAAKL----GKRVAVIERYRNV   40 (461)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhC----CCEEEEEeccccc
Confidence            4569999999999999999999996    9999999997655

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.74  E-value=4e-08  Score=105.66  Aligned_cols=38  Identities=29%  Similarity=0.370  Sum_probs=34.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      .++||+|||||.|||++|+.+++.    |.+|+|+||....+
T Consensus        28 ~~~DVlVIG~G~AGl~AAi~Aa~~----G~~V~lveK~~~~~   65 (617)
T PTZ00139         28 HTYDAVVVGAGGAGLRAALGLVEL----GYKTACISKLFPTR   65 (617)
T ss_pred             cccCEEEECccHHHHHHHHHHHHc----CCcEEEEeccCCCC
Confidence            468999999999999999999996    99999999987654

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.73  E-value=2.2e-07  Score=99.06  Aligned_cols=63  Identities=16%  Similarity=0.162  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEc-CCCc--EEEeeEEEEecCCC
Q 010200          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL-SDGT--SLYAKLVVGADGGK  247 (515)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~g~--~~~ad~vV~AdG~~  247 (515)
                      ..+...|.+.+++.| ++|++++.++++..+           +++     ...++.+.. .+|+  .+.|+.||.|+|..
T Consensus       134 ~~i~~~L~~~~~~~g-v~i~~~t~v~~Li~~-----------~~~-----~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~  196 (543)
T PRK06263        134 HEMMMGLMEYLIKER-IKILEEVMAIKLIVD-----------ENR-----EVIGAIFLDLRNGEIFPIYAKATILATGGA  196 (543)
T ss_pred             HHHHHHHHHHHhcCC-CEEEeCeEeeeeEEe-----------CCc-----EEEEEEEEECCCCcEEEEEcCcEEECCCCC
Confidence            567888888888876 999999999999761           000     011222222 4554  68999999999998


Q ss_pred             chh
Q 010200          248 SRV  250 (515)
Q Consensus       248 S~v  250 (515)
                      +.+
T Consensus       197 ~~~  199 (543)
T PRK06263        197 GQL  199 (543)
T ss_pred             CCC
Confidence            853

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.73  E-value=3.5e-07  Score=97.60  Aligned_cols=39  Identities=36%  Similarity=0.581  Sum_probs=35.4

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ...++||+|||+|++|+++|+.|++.    |++|+||||.+.+
T Consensus         4 ~~~~~DvvVvG~G~aG~~aA~~aa~~----G~~v~llEk~~~~   42 (557)
T PRK07843          4 TVQEYDVVVVGSGAAGMVAALTAAHR----GLSTVVVEKAPHY   42 (557)
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHC----CCCEEEEeCCCCC
Confidence            34579999999999999999999996    9999999998765

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.72  E-value=8.5e-08  Score=100.37  Aligned_cols=35  Identities=37%  Similarity=0.535  Sum_probs=32.8

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ..|||+||||||+|+++|+.|+++    |++|+|+|+..
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~----G~~V~liE~~~   37 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQL----GLKVAIVEKEK   37 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHC----CCcEEEEeccc
Confidence            469999999999999999999996    99999999876

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.72  E-value=8.5e-08  Score=102.69  Aligned_cols=38  Identities=24%  Similarity=0.360  Sum_probs=34.1

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      ..+||+|||||.|||++|+.+++.    |.+|+|+||....+
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~Aa~~----G~~V~lleK~~~~~   43 (588)
T PRK08958          6 REFDAVVIGAGGAGMRAALQISQS----GQSCALLSKVFPTR   43 (588)
T ss_pred             cccCEEEECccHHHHHHHHHHHHc----CCcEEEEEccCCCC
Confidence            358999999999999999999996    99999999987653

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.72  E-value=2.9e-08  Score=106.59  Aligned_cols=38  Identities=32%  Similarity=0.413  Sum_probs=34.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      ..+||||||||+|||++|+.+++.    |.+|+|+||....+
T Consensus        11 ~~~DVvVIG~G~AGl~AAl~Aa~~----G~~V~lveK~~~~~   48 (598)
T PRK09078         11 HKYDVVVVGAGGAGLRATLGMAEA----GLKTACITKVFPTR   48 (598)
T ss_pred             cccCEEEECccHHHHHHHHHHHHc----CCcEEEEEccCCCC
Confidence            468999999999999999999996    89999999987543

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=98.72  E-value=5e-08  Score=104.01  Aligned_cols=35  Identities=34%  Similarity=0.506  Sum_probs=33.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      .++||||||+|.|||++|+.+++.    |.+|+|+||.+
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~~----G~~VivlEK~~   37 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELADA----GKRVLLLDQEN   37 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHC----CCeEEEEeCCC
Confidence            568999999999999999999996    99999999998

>PRK08071 L-aspartate oxidase; Provisional

Probab=98.71  E-value=2.9e-07  Score=97.11  Aligned_cols=36  Identities=25%  Similarity=0.447  Sum_probs=32.6

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      .+||+|||+|.|||++|+.+++     |.+|+|+||.+..+
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~-----g~~V~lveK~~~~~   38 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCH-----EYNVIIITKKTKRN   38 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhc-----CCCEEEEeccCCCC
Confidence            5799999999999999999976     78999999998653

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.71  E-value=7.5e-08  Score=100.97  Aligned_cols=35  Identities=26%  Similarity=0.567  Sum_probs=32.6

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN   91 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~   91 (515)
                      ...|||+||||||+|+++|+.|++.    |++|+|+|+.
T Consensus         2 ~~~ydvvVIG~GpaG~~aA~~aa~~----G~~v~lie~~   36 (472)
T PRK05976          2 AKEYDLVIIGGGPGGYVAAIRAGQL----GLKTALVEKG   36 (472)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhC----CCeEEEEEcc
Confidence            3579999999999999999999996    9999999986

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.70  E-value=2.2e-07  Score=99.64  Aligned_cols=66  Identities=21%  Similarity=0.200  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCC-CCcccccccCCeeEE-EcCCCc--EEEeeEEEEecCC
Q 010200          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST-PSATTLFTKGHLAKL-DLSDGT--SLYAKLVVGADGG  246 (515)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v-~~~~g~--~~~ad~vV~AdG~  246 (515)
                      ..+...|.+.+.+.| ++|+.++.|+++..         +++ +++     ...++.+ ...+|+  .+.|+.||.|+|.
T Consensus       140 ~~i~~~L~~~~~~~g-v~i~~~~~v~~Li~---------~~~~~~g-----~v~Gv~~~~~~~g~~~~i~AkaVVLATGG  204 (583)
T PRK08205        140 HMILQTLYQNCVKHG-VEFFNEFYVLDLLL---------TETPSGP-----VAAGVVAYELATGEIHVFHAKAVVFATGG  204 (583)
T ss_pred             HHHHHHHHHHHHhcC-CEEEeCCEEEEEEe---------cCCccCC-----cEEEEEEEEcCCCeEEEEEeCeEEECCCC
Confidence            568889999998887 99999999999975         110 001     1122322 234554  6899999999999


Q ss_pred             Cchhh
Q 010200          247 KSRVR  251 (515)
Q Consensus       247 ~S~vr  251 (515)
                      .+.+-
T Consensus       205 ~~~~~  209 (583)
T PRK08205        205 SGRVY  209 (583)
T ss_pred             CcccC
Confidence            98653

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.69  E-value=1.1e-07  Score=83.69  Aligned_cols=35  Identities=29%  Similarity=0.529  Sum_probs=28.8

Q ss_pred             EEECCCHHHHHHHHHHhcCC-CCCCcEEEEEcCCCC
Q 010200           59 AVVGGGMVGMALACSLASMP-LTKHLSVAIIDSNPA   93 (515)
Q Consensus        59 vIVGgG~aGl~~A~~L~~~~-~~~G~~V~v~E~~~~   93 (515)
                      +||||||+|++++..|.+.. .....+|+|||+.+.
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~   36 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF   36 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence            59999999999999998862 124689999999554

>PRK06116 glutathione reductase; Validated

Probab=98.69  E-value=1.5e-07  Score=98.22  Aligned_cols=34  Identities=38%  Similarity=0.595  Sum_probs=32.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN   91 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~   91 (515)
                      .+|||+||||||+|+++|+.|++.    |++|+|+|+.
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~~a~~----G~~V~liE~~   36 (450)
T PRK06116          3 KDYDLIVIGGGSGGIASANRAAMY----GAKVALIEAK   36 (450)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC----CCeEEEEecc
Confidence            469999999999999999999996    9999999986

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=98.68  E-value=1.5e-07  Score=93.92  Aligned_cols=72  Identities=18%  Similarity=0.202  Sum_probs=54.8

Q ss_pred             EEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCC---C--cEEEeeEE
Q 010200          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD---G--TSLYAKLV  240 (515)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---g--~~~~ad~v  240 (515)
                      ..|+-..|.+.|.+.+.+..+++++++++|++|++                   ..+..|.|...|   |  .++.+++|
T Consensus       176 TDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r-------------------~~dg~W~v~~~~~~~~~~~~v~a~FV  236 (488)
T PF06039_consen  176 TDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKR-------------------NGDGRWEVKVKDLKTGEKREVRAKFV  236 (488)
T ss_pred             ccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEE-------------------CCCCCEEEEEEecCCCCeEEEECCEE
Confidence            45777899999999999885699999999999987                   133447776532   2  37999999


Q ss_pred             EEecCCCch-hhhhcCC
Q 010200          241 VGADGGKSR-VRELAGF  256 (515)
Q Consensus       241 V~AdG~~S~-vr~~l~~  256 (515)
                      +...|+.|- +-+.+|+
T Consensus       237 fvGAGG~aL~LLqksgi  253 (488)
T PF06039_consen  237 FVGAGGGALPLLQKSGI  253 (488)
T ss_pred             EECCchHhHHHHHHcCC
Confidence            999998874 4444554

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.68  E-value=4.5e-07  Score=97.26  Aligned_cols=39  Identities=31%  Similarity=0.543  Sum_probs=35.2

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      .+..+||+|||+|++|+++|+.+++.    |.+|+||||.+..
T Consensus         9 ~~~~~dvvvvG~G~aG~~aa~~~~~~----g~~v~~iek~~~~   47 (581)
T PRK06134          9 PDLECDVLVIGSGAAGLSAAVTAAWH----GLKVIVVEKDPVF   47 (581)
T ss_pred             CCCccCEEEECcCHHHHHHHHHHHHC----CCeEEEEecCCCC
Confidence            44579999999999999999999996    9999999998765

>PRK06370 mercuric reductase; Validated

Probab=98.68  E-value=7.4e-08  Score=100.78  Aligned_cols=37  Identities=32%  Similarity=0.565  Sum_probs=33.9

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ++.+|||+||||||+|+++|+.|++.    |++|+|+|+..
T Consensus         2 ~~~~~DvvVIG~GpaG~~aA~~aa~~----G~~v~lie~~~   38 (463)
T PRK06370          2 PAQRYDAIVIGAGQAGPPLAARAAGL----GMKVALIERGL   38 (463)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhC----CCeEEEEecCc
Confidence            45679999999999999999999996    99999999864

>PRK14694 putative mercuric reductase; Provisional

Probab=98.67  E-value=2e-07  Score=97.63  Aligned_cols=37  Identities=27%  Similarity=0.415  Sum_probs=33.7

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ...+|||+||||||+|+++|+.|+++    |++|+|+|+..
T Consensus         3 ~~~~~dviVIGaG~aG~~aA~~l~~~----g~~v~lie~~~   39 (468)
T PRK14694          3 SDNNLHIAVIGSGGSAMAAALKATER----GARVTLIERGT   39 (468)
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhC----CCcEEEEEccc
Confidence            34679999999999999999999997    99999999864

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.66  E-value=8.9e-08  Score=102.62  Aligned_cols=39  Identities=28%  Similarity=0.572  Sum_probs=35.3

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      +.++||||||+|++||++|+.+++.    |.+|+|+||....+
T Consensus         7 ~~~~DVvVVG~G~aGl~AA~~aa~~----G~~v~llEk~~~~g   45 (574)
T PRK12842          7 ELTCDVLVIGSGAGGLSAAITARKL----GLDVVVLEKEPVFG   45 (574)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHc----CCeEEEEecCCCCC
Confidence            3478999999999999999999996    99999999998764

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.66  E-value=1.8e-07  Score=97.21  Aligned_cols=36  Identities=33%  Similarity=0.562  Sum_probs=33.1

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ++|||+||||||+|+++|+.|+++    |++|+|+|+.+.
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~la~~----g~~V~lie~~~~   37 (441)
T PRK08010          2 NKYQAVIIGFGKAGKTLAVTLAKA----GWRVALIEQSNA   37 (441)
T ss_pred             CcCCEEEECCCHhHHHHHHHHHHC----CCeEEEEcCCCC
Confidence            469999999999999999999996    999999999763

>PRK07395 L-aspartate oxidase; Provisional

Probab=98.65  E-value=3.3e-07  Score=97.35  Aligned_cols=39  Identities=38%  Similarity=0.542  Sum_probs=33.9

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      .+..+||+|||+|.|||++|+.+++     |.+|+|+||.+..+
T Consensus         6 ~~~e~DVlVVG~G~AGl~AAi~A~~-----G~~V~lieK~~~~g   44 (553)
T PRK07395          6 LPSQFDVLVVGSGAAGLYAALCLPS-----HLRVGLITKDTLKT   44 (553)
T ss_pred             ccccCCEEEECccHHHHHHHHHhhc-----CCCEEEEEccCCCC
Confidence            3457899999999999999999964     89999999987653

>PRK09897 hypothetical protein; Provisional

Probab=98.65  E-value=1.2e-07  Score=99.46  Aligned_cols=38  Identities=29%  Similarity=0.439  Sum_probs=32.5

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      .+|+||||||+|+++|..|.+..  ..++|+|||+...++
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~--~~l~V~lfEp~~~~G   39 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQ--TPLSISIFEQADEAG   39 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcC--CCCcEEEEecCCCCC
Confidence            47999999999999999998752  357999999988764

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.65  E-value=5.5e-07  Score=95.82  Aligned_cols=40  Identities=38%  Similarity=0.558  Sum_probs=35.4

Q ss_pred             CCCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      ..+.++||||||+| +|+++|+.+++.    |.+|+|+||.+..+
T Consensus        12 ~~d~e~DvvvvG~G-~G~~aA~~a~~~----G~~v~v~Ek~~~~G   51 (564)
T PRK12845         12 VRDTTVDLLVVGSG-TGMAAALAAHEL----GLSVLIVEKSSYVG   51 (564)
T ss_pred             CCCceeCEEEECCc-HHHHHHHHHHHC----CCcEEEEecCCCCc
Confidence            44568999999999 899999999996    99999999988764

>PRK10262 thioredoxin reductase; Provisional

Probab=98.64  E-value=2.9e-07  Score=91.52  Aligned_cols=114  Identities=17%  Similarity=0.246  Sum_probs=73.4

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhh
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (515)
                      .+.+||+|||||||||++|+.|++.    |++|+++|+.. .+              +....                  
T Consensus         4 ~~~~~vvIIGgGpaGl~aA~~l~~~----g~~~~~ie~~~-~g--------------g~~~~------------------   46 (321)
T PRK10262          4 TKHSKLLILGSGPAGYTAAVYAARA----NLQPVLITGME-KG--------------GQLTT------------------   46 (321)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHC----CCCeEEEEeec-CC--------------Cceec------------------
Confidence            3578999999999999999999996    89999999653 31              10000                  


Q ss_pred             hhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCC
Q 010200          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (515)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~  212 (515)
                           ...  +++..+             ..  ..+....+.+.+.+.+...+ .++..+ +|+.++.            
T Consensus        47 -----~~~--~~~~~~-------------~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~-~v~~v~~------------   90 (321)
T PRK10262         47 -----TTE--VENWPG-------------DP--NDLTGPLLMERMHEHATKFE-TEIIFD-HINKVDL------------   90 (321)
T ss_pred             -----Cce--ECCCCC-------------CC--CCCCHHHHHHHHHHHHHHCC-CEEEee-EEEEEEe------------
Confidence                 000  000000             00  01234456677777777776 677765 6777755            


Q ss_pred             CCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCc
Q 010200          213 PSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKS  248 (515)
Q Consensus       213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S  248 (515)
                              ....+++..+++ .+.+|.||.|+|.+.
T Consensus        91 --------~~~~~~v~~~~~-~~~~d~vilAtG~~~  117 (321)
T PRK10262         91 --------QNRPFRLTGDSG-EYTCDALIIATGASA  117 (321)
T ss_pred             --------cCCeEEEEecCC-EEEECEEEECCCCCC
Confidence                    334556654444 689999999999875

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.64  E-value=2.8e-07  Score=98.82  Aligned_cols=38  Identities=26%  Similarity=0.400  Sum_probs=34.1

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      .+.||+|||||+|||++|+.+++.    |.+|+|+||.+..+
T Consensus         2 ~~~DVlVVG~G~AGl~AAi~Aa~~----G~~V~lieK~~~~~   39 (589)
T PRK08641          2 AKGKVIVVGGGLAGLMATIKAAEA----GVHVDLFSLVPVKR   39 (589)
T ss_pred             CCccEEEECchHHHHHHHHHHHHc----CCcEEEEEccCCCC
Confidence            356999999999999999999996    99999999988653

>PRK09077 L-aspartate oxidase; Provisional

Probab=98.63  E-value=1.7e-07  Score=99.51  Aligned_cols=38  Identities=37%  Similarity=0.641  Sum_probs=33.4

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      +..+||+|||+|+|||++|+.+++     +.+|+|+||....+
T Consensus         6 ~~~~DVlVVG~G~AGl~AA~~aa~-----~~~VilveK~~~~~   43 (536)
T PRK09077          6 EHQCDVLIIGSGAAGLSLALRLAE-----HRRVAVLSKGPLSE   43 (536)
T ss_pred             cccCCEEEECchHHHHHHHHHHHH-----CCCEEEEeccCCCC
Confidence            456899999999999999999988     47999999988653

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.62  E-value=8.5e-08  Score=100.27  Aligned_cols=37  Identities=32%  Similarity=0.572  Sum_probs=33.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ++|||+||||||+|+++|+.|++.    |++|+|+|+...+
T Consensus         2 ~~~DvvVIG~GpaG~~AA~~aa~~----G~~V~liE~~~~~   38 (466)
T PRK06115          2 ASYDVVIIGGGPGGYNAAIRAGQL----GLKVACVEGRSTL   38 (466)
T ss_pred             CcccEEEECCCHHHHHHHHHHHhC----CCeEEEEecCCce
Confidence            359999999999999999999996    9999999986544

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=98.62  E-value=3e-07  Score=99.57  Aligned_cols=38  Identities=26%  Similarity=0.381  Sum_probs=34.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      ..+||+|||||.|||++|+.+++.    |.+|+|+||.+..+
T Consensus         4 ~~~DVlVIG~G~AGl~AAi~Aae~----G~~VivleK~~~~~   41 (657)
T PRK08626          4 IYTDALVIGAGLAGLRVAIAAAQR----GLDTIVLSLVPAKR   41 (657)
T ss_pred             eeccEEEECccHHHHHHHHHHHHc----CCCEEEEeCCCCCC
Confidence            468999999999999999999995    99999999987654

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.61  E-value=3.3e-07  Score=95.19  Aligned_cols=36  Identities=39%  Similarity=0.531  Sum_probs=33.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ++|||+||||||||+++|..|++.    |++|+|+||...
T Consensus         2 ~~~dvvVIG~GpaG~~aA~~l~~~----g~~V~liE~~~~   37 (438)
T PRK07251          2 LTYDLIVIGFGKAGKTLAAKLASA----GKKVALVEESKA   37 (438)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhC----CCEEEEEecCCc
Confidence            469999999999999999999996    999999999864

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.60  E-value=7.1e-07  Score=93.44  Aligned_cols=60  Identities=13%  Similarity=0.186  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCC--cEEEeeEEEEecCCCc
Q 010200          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG--TSLYAKLVVGADGGKS  248 (515)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g--~~~~ad~vV~AdG~~S  248 (515)
                      ..+...+.+.+++.| ++++.+++|++++.                    .++.+.+.+.+|  .++.+|.||.|.|...
T Consensus       211 ~~~~~~~~~~l~~~g-i~i~~~~~v~~i~~--------------------~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p  269 (461)
T TIGR01350       211 AEVSKVVAKALKKKG-VKILTNTKVTAVEK--------------------NDDQVVYENKGGETETLTGEKVLVAVGRKP  269 (461)
T ss_pred             HHHHHHHHHHHHHcC-CEEEeCCEEEEEEE--------------------eCCEEEEEEeCCcEEEEEeCEEEEecCCcc
Confidence            456677778888887 99999999999975                    234566666666  4799999999999877


Q ss_pred             hhh
Q 010200          249 RVR  251 (515)
Q Consensus       249 ~vr  251 (515)
                      ...
T Consensus       270 ~~~  272 (461)
T TIGR01350       270 NTE  272 (461)
T ss_pred             cCC
Confidence            653

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PLN02976 amine oxidase

Probab=98.59  E-value=1.7e-05  Score=89.59  Aligned_cols=68  Identities=15%  Similarity=0.158  Sum_probs=46.3

Q ss_pred             cCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCc-chHHHHHHHHHHhhHHHHHHHHHHH
Q 010200          393 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADI-GEASLLKKYEAERKPANIVMMAVLD  463 (515)
Q Consensus       393 ~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~-~~~~al~~Y~~~r~~~~~~~~~~s~  463 (515)
                      .+++++.|++.+...|-+   +.-|++.+...|+.|...+..+.++ ....+++.|++........+..+.+
T Consensus      1150 ggRLFFAGEATS~~~pGT---VHGAIeSG~RAA~eIL~~L~~G~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 1218 (1713)
T PLN02976       1150 ENCLFFAGEATCKEHPDT---VGGAMMSGLREAVRIIDILNTGNDYTAEVEALETAQRHSESERDEVRDITK 1218 (1713)
T ss_pred             CCcEEEEehhhhCCCcch---HHHHHHHHHHHHHHHHHHHHccCccccHHHHHHHhhhhhhhhHHHHHHHHH
Confidence            467999999988766644   4557889998888888888766543 3467788877654444333333333

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.59  E-value=4e-07  Score=97.51  Aligned_cols=40  Identities=33%  Similarity=0.464  Sum_probs=35.9

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      ...++||||||+|++||++|+.+++.    |.+|+|+||.+..+
T Consensus         8 ~~~~~DVvVVG~G~AGl~AA~~aae~----G~~VivlEk~~~~g   47 (584)
T PRK12835          8 FDREVDVLVVGSGGGGMTAALTAAAR----GLDTLVVEKSAHFG   47 (584)
T ss_pred             ccCcCCEEEECccHHHHHHHHHHHHC----CCcEEEEEcCCCCC
Confidence            44578999999999999999999996    99999999998764

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.59  E-value=1e-06  Score=93.94  Aligned_cols=39  Identities=38%  Similarity=0.575  Sum_probs=35.0

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      +.++||+|||+|++|+++|+.|++.    |.+|+||||....+
T Consensus         4 d~~~DvvIiG~G~aGl~aA~~~a~~----G~~v~liEk~~~~g   42 (557)
T PRK12844          4 DETYDVVVVGSGGGGMCAALAAADS----GLEPLIVEKQDKVG   42 (557)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHC----CCcEEEEecCCCCC
Confidence            3478999999999999999999996    99999999987653

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.59  E-value=3.4e-07  Score=96.75  Aligned_cols=39  Identities=38%  Similarity=0.531  Sum_probs=34.6

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      .+.++||||||+| +||++|+.+++.    |.+|+|+||.+..+
T Consensus         4 ~d~~~DVvVVG~G-aGl~aA~~aa~~----G~~V~vlEk~~~~G   42 (513)
T PRK12837          4 WDEEVDVLVAGSG-GGVAGAYTAARE----GLSVALVEATDKFG   42 (513)
T ss_pred             CCCccCEEEECch-HHHHHHHHHHHC----CCcEEEEecCCCCC
Confidence            3457899999999 999999999996    99999999988653

>PLN02507 glutathione reductase

Probab=98.58  E-value=1.8e-07  Score=98.47  Aligned_cols=34  Identities=26%  Similarity=0.343  Sum_probs=31.8

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDS   90 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~   90 (515)
                      ..+|||+||||||+|+.+|..|+++    |.+|+|+|+
T Consensus        23 ~~~yDvvVIG~GpaG~~aA~~a~~~----G~~V~liE~   56 (499)
T PLN02507         23 HYDFDLFVIGAGSGGVRAARFSANF----GAKVGICEL   56 (499)
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHC----CCeEEEEec
Confidence            4569999999999999999999997    999999997

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.58  E-value=3.6e-07  Score=95.08  Aligned_cols=35  Identities=29%  Similarity=0.470  Sum_probs=32.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ++|||+||||||+|+++|+.|++.    |++|+|+||..
T Consensus         1 ~~yDvvVIG~GpaG~~aA~~aa~~----G~~V~liE~~~   35 (450)
T TIGR01421         1 KHYDYLVIGGGSGGIASARRAAEH----GAKALLVEAKK   35 (450)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC----CCcEEEecccc
Confidence            369999999999999999999996    99999999964

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=98.57  E-value=6e-07  Score=93.09  Aligned_cols=65  Identities=17%  Similarity=0.177  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcC-CCcEEEeeEEEEecCCCch
Q 010200          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS-DGTSLYAKLVVGADGGKSR  249 (515)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~g~~~~ad~vV~AdG~~S~  249 (515)
                      ..+.+.|.+.+++.| ++|+++++|+++..         +++        .+..+.+... ++.++.++.||.|+|..+.
T Consensus       123 ~~l~~~L~~~a~~~G-v~i~~~~~v~~l~~---------~~~--------~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~  184 (432)
T TIGR02485       123 KALTNALYSSAERLG-VEIRYGIAVDRIPP---------EAF--------DGAHDGPLTTVGTHRITTQALVLAAGGLGA  184 (432)
T ss_pred             HHHHHHHHHHHHHcC-CEEEeCCEEEEEEe---------cCC--------CCeEEEEEEcCCcEEEEcCEEEEcCCCccc
Confidence            568899999999988 99999999999976         100        1122334333 3347999999999999876


Q ss_pred             hhhh
Q 010200          250 VREL  253 (515)
Q Consensus       250 vr~~  253 (515)
                      -+..
T Consensus       185 n~~~  188 (432)
T TIGR02485       185 NRDW  188 (432)
T ss_pred             CHHH
Confidence            5443

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=98.57  E-value=3.2e-07  Score=105.56  Aligned_cols=39  Identities=33%  Similarity=0.475  Sum_probs=35.2

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      +.++||||||||.||+++|+.+++.    |.+|+|+||.+..+
T Consensus       407 t~~~DVvVVG~G~AGl~AAi~Aae~----Ga~VivlEK~~~~G  445 (1167)
T PTZ00306        407 SLPARVIVVGGGLAGCSAAIEAASC----GAQVILLEKEAKLG  445 (1167)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHC----CCcEEEEEccCCCC
Confidence            4568999999999999999999996    99999999988653

>PRK07512 L-aspartate oxidase; Provisional

Probab=98.57  E-value=7.6e-07  Score=94.03  Aligned_cols=61  Identities=18%  Similarity=0.212  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCC--eeEEEcCCCc-EEEeeEEEEecCCC
Q 010200          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGH--LAKLDLSDGT-SLYAKLVVGADGGK  247 (515)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~g~-~~~ad~vV~AdG~~  247 (515)
                      ..+...|.+.+.+.++++++.++.++++..                   +++.  ++.+...++. .+.++.||.|+|..
T Consensus       136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~-------------------~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~  196 (513)
T PRK07512        136 AAIMRALIAAVRATPSITVLEGAEARRLLV-------------------DDGAVAGVLAATAGGPVVLPARAVVLATGGI  196 (513)
T ss_pred             HHHHHHHHHHHHhCCCCEEEECcChhheee-------------------cCCEEEEEEEEeCCeEEEEECCEEEEcCCCC
Confidence            568888998888764499999999999865                   0112  2233222232 68999999999998


Q ss_pred             chh
Q 010200          248 SRV  250 (515)
Q Consensus       248 S~v  250 (515)
                      +.+
T Consensus       197 ~~~  199 (513)
T PRK07512        197 GGL  199 (513)
T ss_pred             cCC
Confidence            754

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.57  E-value=1.3e-06  Score=89.76  Aligned_cols=44  Identities=32%  Similarity=0.413  Sum_probs=39.1

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCC
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNF   99 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~   99 (515)
                      |+.++||||||+|++|+.+|..|++.    |.+|+++|++...+...+
T Consensus         1 m~~~~DViViGtGL~e~ilAa~Ls~~----GkkVLhlD~n~~yGG~~a   44 (443)
T PTZ00363          1 MDETYDVIVCGTGLKECILSGLLSVN----GKKVLHMDRNPYYGGESA   44 (443)
T ss_pred             CCCcceEEEECCChHHHHHHhhhhhC----CCEEEEecCCCCcCcccc
Confidence            35679999999999999999999996    999999999998875543

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=98.57  E-value=5.3e-07  Score=91.26  Aligned_cols=123  Identities=15%  Similarity=0.147  Sum_probs=71.0

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      .||+|||||++|+.+|+.|++.    |++|+|||+++........ .. .........+..+..+++..|++..-..   
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~----G~~V~LiE~rp~~~~p~~~-~~-~~~elvcs~Slgg~~l~~a~Gil~~ei~---   71 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQA----GVPVILYEMRPEKLTPAHH-TE-DLAELVCSNSLGAKALDRAAGLLKTEMR---   71 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhC----CCcEEEEeccccccCchhh-hh-hhhhhcccccccchhHHhccCcHHHHHh---
Confidence            3799999999999999999996    9999999998764321100 00 0000111123334455666666543222   


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEE
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSM  198 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i  198 (515)
                       ....+.+.....   ...+      ....+.++|..+.+.+.+.+++.++++++ ...|+++
T Consensus        72 -~lg~l~~~~ad~---~~Ip------agg~~~vDR~lF~~~L~~qLe~~pnItvi-q~eV~dL  123 (433)
T TIGR00137        72 -QLSSLIITAADR---HAVP------AGGALAVDRGIFSRSLTEQVASHPNVTLI-REEVTEI  123 (433)
T ss_pred             -hcCeeeeehhhh---hCCC------CCceEEehHHHHHHHHHHHHHhCCCcEEE-eeeeEEE
Confidence             111122111101   0000      11235789999999999999887766665 4466655

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=98.57  E-value=6.2e-07  Score=91.06  Aligned_cols=73  Identities=18%  Similarity=0.320  Sum_probs=49.7

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCC-CCCCC---CCcEEEeC-HhHHHHHHHcCCchhhh
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIK-KEDPP---DPRVSTVT-PATISFFKEIGAWQYVQ  131 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~-~~~~~---~~~~~~l~-~~~~~~l~~lgl~~~~~  131 (515)
                      .|+|||||++||++|+.|++.+  +...|+|||+++..+..-... .++..   ........ +..++.++++|+.+.+.
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~--p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eLGled~l~   79 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAG--PDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKELGLEDKLL   79 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhC--CCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHhCcHHhhc
Confidence            6999999999999999999972  128999999998775322100 00000   01112222 66778889999988877

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.56  E-value=6.4e-07  Score=93.96  Aligned_cols=33  Identities=39%  Similarity=0.574  Sum_probs=31.4

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDS   90 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~   90 (515)
                      ..|||+||||||+|+++|+.|++.    |.+|+|+|+
T Consensus         3 ~~~DviIIG~G~aG~~aA~~~~~~----g~~v~lie~   35 (475)
T PRK06327          3 KQFDVVVIGAGPGGYVAAIRAAQL----GLKVACIEA   35 (475)
T ss_pred             cceeEEEECCCHHHHHHHHHHHhC----CCeEEEEec
Confidence            469999999999999999999996    999999998

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=98.55  E-value=5.8e-06  Score=85.13  Aligned_cols=68  Identities=16%  Similarity=0.169  Sum_probs=55.1

Q ss_pred             EEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecC
Q 010200          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADG  245 (515)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG  245 (515)
                      -.++...+.++|...+.++| +.|..++.|++|..                   ..+..+.|++.-|. +++..||.|+|
T Consensus       182 G~~DP~~lC~ala~~A~~~G-A~viE~cpV~~i~~-------------------~~~~~~gVeT~~G~-iet~~~VNaaG  240 (856)
T KOG2844|consen  182 GVMDPAGLCQALARAASALG-ALVIENCPVTGLHV-------------------ETDKFGGVETPHGS-IETECVVNAAG  240 (856)
T ss_pred             cccCHHHHHHHHHHHHHhcC-cEEEecCCcceEEe-------------------ecCCccceeccCcc-eecceEEechh
Confidence            35788999999999999999 99999999999976                   12234477777776 99999999999


Q ss_pred             CCchhhhhc
Q 010200          246 GKSRVRELA  254 (515)
Q Consensus       246 ~~S~vr~~l  254 (515)
                      .|..--..|
T Consensus       241 vWAr~Vg~m  249 (856)
T KOG2844|consen  241 VWAREVGAM  249 (856)
T ss_pred             HHHHHhhhh
Confidence            998543333

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.55  E-value=1.6e-06  Score=90.77  Aligned_cols=35  Identities=31%  Similarity=0.504  Sum_probs=32.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      .+|||+||||||+|+++|+.|++.    |.+|+|+|++.
T Consensus         3 ~~~DvvIIG~GpaG~~AA~~aa~~----G~~V~lie~~~   37 (466)
T PRK07818          3 THYDVVVLGAGPGGYVAAIRAAQL----GLKTAVVEKKY   37 (466)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhC----CCeEEEEecCC
Confidence            359999999999999999999996    99999999863

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=98.55  E-value=3.9e-07  Score=90.61  Aligned_cols=43  Identities=26%  Similarity=0.497  Sum_probs=39.5

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNF   99 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~   99 (515)
                      ....||||||+|.+||++|+.|.|+    |++|+|+|.+...+.+.+
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~ka----G~~v~ilEar~r~GGR~~   47 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKA----GYQVQILEARDRVGGRSL   47 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhc----CcEEEEEeccCCcCceeE
Confidence            4678999999999999999999997    999999999999987665

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.54  E-value=9e-08  Score=88.20  Aligned_cols=33  Identities=39%  Similarity=0.663  Sum_probs=30.5

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ||+||||||||+++|..|++.    |++|+|+|+.+.
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~----~~~v~ii~~~~~   33 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARP----GAKVLIIEKSPG   33 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHT----TSEEEEESSSSH
T ss_pred             CEEEEecHHHHHHHHHHHhcC----CCeEEEEecccc
Confidence            799999999999999999985    999999988774

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=98.54  E-value=8.2e-07  Score=95.37  Aligned_cols=33  Identities=33%  Similarity=0.395  Sum_probs=30.5

Q ss_pred             EEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           58 VAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        58 VvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      |+|||+|+|||++|+.+++.    |.+|+|+||.+.+
T Consensus         1 VlVVG~G~AGl~AAl~Aae~----G~~VilleK~~~~   33 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAEL----GYHVKLFSYVDAP   33 (603)
T ss_pred             CEEECccHHHHHHHHHHHHc----CCCEEEEEecCCC
Confidence            79999999999999999996    9999999998844

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.53  E-value=5.2e-07  Score=69.71  Aligned_cols=34  Identities=38%  Similarity=0.694  Sum_probs=31.8

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      +|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~----g~~vtli~~~~~~   34 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAEL----GKEVTLIERSDRL   34 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHT----TSEEEEEESSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHh----CcEEEEEeccchh
Confidence            489999999999999999996    8999999999966

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=98.52  E-value=7e-06  Score=81.44  Aligned_cols=59  Identities=14%  Similarity=0.264  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR  249 (515)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~  249 (515)
                      ..+..-+.+.++++| ++|+++++|.+++.                   .++....+..++|.++.+|.||.|-|..+.
T Consensus       173 ~~vvkni~~~l~~~G-~ei~f~t~VeDi~~-------------------~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~  231 (486)
T COG2509         173 PKVVKNIREYLESLG-GEIRFNTEVEDIEI-------------------EDNEVLGVKLTKGEEIEADYVVLAPGRSGR  231 (486)
T ss_pred             HHHHHHHHHHHHhcC-cEEEeeeEEEEEEe-------------------cCCceEEEEccCCcEEecCEEEEccCcchH
Confidence            567788999999998 99999999999987                   122356788889999999999999998764

>PRK13748 putative mercuric reductase; Provisional

Probab=98.51  E-value=8.3e-07  Score=95.33  Aligned_cols=34  Identities=29%  Similarity=0.378  Sum_probs=32.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN   91 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~   91 (515)
                      .+|||+||||||+|+++|+.|+++    |.+|+|+|++
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~----G~~v~lie~~  130 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQ----GARVTLIERG  130 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhC----CCeEEEEecC
Confidence            469999999999999999999997    9999999987

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=98.50  E-value=3.7e-07  Score=97.83  Aligned_cols=41  Identities=32%  Similarity=0.504  Sum_probs=36.1

Q ss_pred             CCCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      ..+.++||+|||+|++|+++|+.+++.    |++|+|+||....+
T Consensus        12 ~~~~~~dvvvvG~G~aG~~aa~~~~~~----g~~v~l~ek~~~~g   52 (578)
T PRK12843         12 RWDAEFDVIVIGAGAAGMSAALFAAIA----GLKVLLVERTEYVG   52 (578)
T ss_pred             CCCCCCCEEEECcCHHHHHHHHHHHHC----CCcEEEEecCCCCC
Confidence            345578999999999999999999996    99999999987654

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=98.49  E-value=4.5e-07  Score=84.10  Aligned_cols=173  Identities=13%  Similarity=0.144  Sum_probs=91.1

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCC-CCCC-cEEEEEcCCCCCCCCCCCCCCCCCCCc--E---EEeCHhHHHHHHHcCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMP-LTKH-LSVAIIDSNPALGKSNFIKKEDPPDPR--V---STVTPATISFFKEIGA  126 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~-~~~G-~~V~v~E~~~~~~~~~~~~~~~~~~~~--~---~~l~~~~~~~l~~lgl  126 (515)
                      ...+|+|||||+.|.++|+.|++.+ +.+| +.|+|||+....+..+-.. ++.....  .   ..+.+-+..+-+.|  
T Consensus         9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGka-sgfLa~wc~~s~~~~La~lsfkLh~~L--   85 (380)
T KOG2852|consen    9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKA-SGFLAKWCQPSIIQPLATLSFKLHEEL--   85 (380)
T ss_pred             CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccccccc-chhhHhhhCCcccchhhHHHHHHHHHH--
Confidence            3478999999999999999999972 1111 7899999988763221000 0000000  0   11111122222222  


Q ss_pred             chhhh---hhhccccceEEEEeC---CCcccee-----ee------cccCCCCcceEEechHHHHHHHHHHHhcCCCceE
Q 010200          127 WQYVQ---QHRHAYFDKMQVWDY---TGLGYTK-----YN------ARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKT  189 (515)
Q Consensus       127 ~~~~~---~~~~~~~~~~~~~~~---~~~~~~~-----~~------~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i  189 (515)
                      .++++   ...+.....+.+.-.   .......     +.      ....+.....-+++...|.+.+++.+++.|+|++
T Consensus        86 sdeydGvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~V~l  165 (380)
T KOG2852|consen   86 SDEYDGVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGGVKL  165 (380)
T ss_pred             HHhhcCcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcCeEE
Confidence            12211   112212222221111   1100000     00      0011122333578899999999999999998999


Q ss_pred             EcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcC---C-CcEEEeeEEEEecCCCch
Q 010200          190 IYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS---D-GTSLYAKLVVGADGGKSR  249 (515)
Q Consensus       190 ~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~-g~~~~ad~vV~AdG~~S~  249 (515)
                      .+| .|.++..+                   +.....+..+   + ....+.+.+|.+.|.|+.
T Consensus       166 v~G-kv~ev~dE-------------------k~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTs  209 (380)
T KOG2852|consen  166 VFG-KVKEVSDE-------------------KHRINSVPKAEAEDTIIKADVHKIVVSAGPWTS  209 (380)
T ss_pred             EEe-eeEEeecc-------------------cccccccchhhhcCceEEeeeeEEEEecCCCch
Confidence            998 78888531                   1111111111   2 235789999999999986

>PTZ00058 glutathione reductase; Provisional

Probab=98.49  E-value=2e-06  Score=91.26  Aligned_cols=38  Identities=34%  Similarity=0.476  Sum_probs=33.9

Q ss_pred             CCCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      +...+|||+||||||+|.++|+.+++.    |.+|+|+|++.
T Consensus        44 ~~~~~yDvvVIG~G~aG~~aA~~aa~~----G~~ValIEk~~   81 (561)
T PTZ00058         44 KPRMVYDLIVIGGGSGGMAAARRAARN----KAKVALVEKDY   81 (561)
T ss_pred             CCCccccEEEECcCHHHHHHHHHHHHc----CCeEEEEeccc
Confidence            334679999999999999999999997    99999999863

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=98.47  E-value=2.5e-06  Score=85.60  Aligned_cols=162  Identities=18%  Similarity=0.202  Sum_probs=91.0

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhH-H-----HHHHH-cCC---
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPAT-I-----SFFKE-IGA---  126 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-----~~l~~-lgl---  126 (515)
                      ||+|||+|+|||++|+.|.+     .++|+|+-|.+.....+..    ...+-...+.+.- .     +.|.. -|+   
T Consensus         9 dV~IiGsG~AGL~~AL~L~~-----~~~V~vltk~~~~~~sS~~----AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~   79 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAP-----SFRVTVLTKGPLGESSSYW----AQGGIAAALSEDDSPELHVADTLAAGAGLCDE   79 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCC-----CCcEEEEeCCCCCCccchh----hcCceEeeeCCCCCHHHHHHHHHHhcCCCCcH
Confidence            89999999999999999999     4899999998866322110    1111122222211 1     11110 011   


Q ss_pred             -------------chhhhhhhccccceEEEEeCCCccceeeecccCCCCcceEE---echHHHHHHHHHHHhcCCCceEE
Q 010200          127 -------------WQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCV---VENKVLHSSLLSCMQNTEFQKTI  190 (515)
Q Consensus       127 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~r~~l~~~L~~~~~~~g~v~i~  190 (515)
                                   .+.+...+. ++      +.+....+.+..+..+....-..   -.-..+.+.|.+++++.++++|+
T Consensus        80 ~aV~~iv~~~~~ai~~Li~~Gv-~F------Dr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~  152 (518)
T COG0029          80 EAVEFIVSEAPEAIEWLIDLGV-PF------DRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVL  152 (518)
T ss_pred             HHHHHHHHhHHHHHHHHHHcCC-CC------cCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEE
Confidence                         112222222 11      11111112222111111111011   22367889999999998889999


Q ss_pred             cCCeeEEEEeCCCCCCcccCCCCCcccccccCC---eeEEEcCCC--cEEEeeEEEEecCCCchhhhh
Q 010200          191 YPSRLTSMALLPSSSSISVDSTPSATTLFTKGH---LAKLDLSDG--TSLYAKLVVGADGGKSRVREL  253 (515)
Q Consensus       191 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~g--~~~~ad~vV~AdG~~S~vr~~  253 (515)
                      .++.+.++..+                   ++.   ++.+...++  .++.++.||.|+|.-+.+=..
T Consensus       153 e~~~a~~li~~-------------------~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly~~  201 (518)
T COG0029         153 EGAEALDLIIE-------------------DGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGLYAY  201 (518)
T ss_pred             ecchhhhhhhc-------------------CCceEeEEEEecCCCeEEEEecCeEEEecCCCcccccc
Confidence            99999998761                   111   333333333  478999999999998877444

>PRK14727 putative mercuric reductase; Provisional

Probab=98.46  E-value=1.4e-06  Score=91.55  Aligned_cols=39  Identities=28%  Similarity=0.376  Sum_probs=34.8

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      .+.++||+||||||+|+++|+.|++.    |.+|+|+|+...+
T Consensus        13 ~~~~~dvvvIG~G~aG~~~a~~~~~~----g~~v~~ie~~~~~   51 (479)
T PRK14727         13 SKLQLHVAIIGSGSAAFAAAIKAAEH----GARVTIIEGADVI   51 (479)
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhC----CCeEEEEEccCcc
Confidence            34579999999999999999999997    9999999998655

>PLN02546 glutathione reductase

Probab=98.46  E-value=4.9e-07  Score=95.79  Aligned_cols=34  Identities=18%  Similarity=0.291  Sum_probs=31.4

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDS   90 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~   90 (515)
                      ..+|||+||||||+|+.+|..|++.    |.+|+|+|+
T Consensus        77 ~~~yDvvVIG~GpaG~~aA~~aa~~----G~~V~liE~  110 (558)
T PLN02546         77 HYDFDLFTIGAGSGGVRASRFASNF----GASAAVCEL  110 (558)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHC----CCeEEEEec
Confidence            3469999999999999999999996    999999996

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=98.45  E-value=7.7e-05  Score=81.48  Aligned_cols=42  Identities=29%  Similarity=0.465  Sum_probs=37.1

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSN   98 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~   98 (515)
                      ....+|+|||||++||++|+.|++.    |++|+|+|++..++.+.
T Consensus       236 ~~~~~v~IiGaG~aGl~aA~~L~~~----g~~v~v~E~~~r~GGr~  277 (808)
T PLN02328        236 VEPANVVVVGAGLAGLVAARQLLSM----GFKVVVLEGRARPGGRV  277 (808)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHC----CCcEEEEeccccCCCcc
Confidence            3467999999999999999999995    99999999999886553

>TIGR02053 MerA mercuric reductase

Probab=98.45  E-value=2.4e-06  Score=89.50  Aligned_cols=33  Identities=33%  Similarity=0.647  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      |||+||||||+|+++|+.|++.    |++|+|+||..
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~----g~~v~lie~~~   33 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAEL----GASVAMVERGP   33 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHC----CCeEEEEeCCc
Confidence            7999999999999999999996    99999999976

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.44  E-value=1.7e-06  Score=90.51  Aligned_cols=34  Identities=35%  Similarity=0.579  Sum_probs=31.7

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN   91 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~   91 (515)
                      ..|||+||||||+|+++|..|++.    |.+|+|+|++
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~~----g~~v~lie~~   35 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAKL----GKKVALIEKG   35 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHC----CCeEEEEeCC
Confidence            469999999999999999999996    9999999993

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.43  E-value=9.9e-07  Score=91.92  Aligned_cols=36  Identities=19%  Similarity=0.481  Sum_probs=31.6

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      +|+|||||++|+++|..|++.+  ++.+|+|||+.+..
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~--~~~~Vtli~~~~~~   37 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLN--KELEITVYEKTDIV   37 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHC--CCCcEEEEECCCcc
Confidence            6999999999999999999863  35799999998855

>PRK12831 putative oxidoreductase; Provisional

Probab=98.42  E-value=4.8e-07  Score=94.31  Aligned_cols=38  Identities=32%  Similarity=0.420  Sum_probs=34.5

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ....||+|||||||||++|+.|++.    |++|+|||+...+
T Consensus       138 ~~~~~V~IIG~GpAGl~aA~~l~~~----G~~V~v~e~~~~~  175 (464)
T PRK12831        138 KKGKKVAVIGSGPAGLTCAGDLAKM----GYDVTIFEALHEP  175 (464)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhC----CCeEEEEecCCCC
Confidence            4568999999999999999999996    9999999988765

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=98.40  E-value=1.7e-06  Score=92.53  Aligned_cols=34  Identities=26%  Similarity=0.456  Sum_probs=31.0

Q ss_pred             cEEEECCCHHHHHHHHHHh----cCCCCCCcEEEEEcCCCCC
Q 010200           57 DVAVVGGGMVGMALACSLA----SMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~----~~~~~~G~~V~v~E~~~~~   94 (515)
                      ||+|||||.|||++|+.++    +.    |.+|+|+||....
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~----G~~VilieK~~~~   38 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKK----GLKIVLVEKANLE   38 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhC----CCeEEEEEccCCC
Confidence            8999999999999999998    54    8999999998864

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.39  E-value=3.6e-07  Score=67.94  Aligned_cols=32  Identities=34%  Similarity=0.627  Sum_probs=29.3

Q ss_pred             EECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           60 VVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        60 IVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      |||||++||++|+.|++.    |++|+|||+.+.++
T Consensus         1 IiGaG~sGl~aA~~L~~~----g~~v~v~E~~~~~G   32 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKA----GYRVTVFEKNDRLG   32 (68)
T ss_dssp             EES-SHHHHHHHHHHHHT----TSEEEEEESSSSSS
T ss_pred             CEeeCHHHHHHHHHHHHC----CCcEEEEecCcccC
Confidence            899999999999999996    99999999999884

...

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=98.39  E-value=5.6e-06  Score=79.07  Aligned_cols=70  Identities=23%  Similarity=0.327  Sum_probs=48.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEE-------E----eCHhHHHHHH
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVS-------T----VTPATISFFK  122 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~-------~----l~~~~~~~l~  122 (515)
                      ...+|+|||+|++||++|+.|++.     ++|++||.+...+....-.. ....+.+.       .    .-|+..++++
T Consensus         7 ~r~~IAVIGsGisGLSAA~~Ls~r-----hdVTLfEA~~rlGGha~Tv~-~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~   80 (447)
T COG2907           7 PRRKIAVIGSGISGLSAAWLLSRR-----HDVTLFEADRRLGGHANTVA-GNTDGGGVFVDTGFIVYNERTYPNLTRLFK   80 (447)
T ss_pred             CCcceEEEcccchhhhhHHhhhcc-----cceEEEeccccccCccceee-ccccCCceeecceeEEecCCCcchHHHHHH
Confidence            457899999999999999999994     89999999998864432100 01112221       1    1256677888


Q ss_pred             HcCCchh
Q 010200          123 EIGAWQY  129 (515)
Q Consensus       123 ~lgl~~~  129 (515)
                      .+|+...
T Consensus        81 ~iGv~t~   87 (447)
T COG2907          81 TIGVDTK   87 (447)
T ss_pred             HcCCCCc
Confidence            8887443

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.38  E-value=8.6e-07  Score=99.33  Aligned_cols=37  Identities=30%  Similarity=0.348  Sum_probs=34.1

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ...+|+|||||||||++|+.|++.    |++|+|||+.+.+
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~----G~~VtVfE~~~~~  341 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVE----GFPVTVFEAFHDL  341 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC----CCeEEEEeeCCCC
Confidence            467999999999999999999996    9999999998866

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.36  E-value=4e-06  Score=95.23  Aligned_cols=38  Identities=37%  Similarity=0.551  Sum_probs=34.7

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      ..+||+|||||||||++|+.|++.    |++|+|+|+.+.++
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar~----G~~V~liD~~~~~G  199 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAARA----GARVILVDEQPEAG  199 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhC----CCcEEEEecCCCCC
Confidence            468999999999999999999996    99999999988764

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=98.36  E-value=1.5e-06  Score=81.63  Aligned_cols=186  Identities=18%  Similarity=0.131  Sum_probs=105.8

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhc-CCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHH---------H-
Q 010200           53 DDQYDVAVVGGGMVGMALACSLAS-MPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISF---------F-  121 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~-~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------l-  121 (515)
                      ...||+||||||++||+.|.+|.- +   ++++|.|+|+.......... .+....-.|+-..|+++++         + 
T Consensus        46 ~~~~D~VvvGgGiVGlAsARel~lrh---p~l~V~vleke~~la~hqSg-hNSgViHaGIYY~P~SLKAklCV~G~~LlY  121 (453)
T KOG2665|consen   46 KERYDLVVVGGGIVGLASARELSLRH---PSLKVAVLEKEKSLAVHQSG-HNSGVIHAGIYYKPGSLKAKLCVEGRELLY  121 (453)
T ss_pred             cccccEEEECCceeehhhhHHHhhcC---CCceEEeeehhhhhceeecc-cccceeeeeeeeCCcccchhhhhccHHHHH
Confidence            457999999999999999998864 4   48999999999887543210 0111122344444444432         1 


Q ss_pred             ---HHcC-------------------Cchhhhhhhc-cccceEEEEeCCCccceeeecccC--CCCcceEEechHHHHHH
Q 010200          122 ---KEIG-------------------AWQYVQQHRH-AYFDKMQVWDYTGLGYTKYNARDV--NKEILGCVVENKVLHSS  176 (515)
Q Consensus       122 ---~~lg-------------------l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~r~~l~~~  176 (515)
                         ++-+                   ..+.+...+. ..+.++++..+.......-.-+..  -..+..-.++...+...
T Consensus       122 ~yc~e~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls  201 (453)
T KOG2665|consen  122 EYCDEKKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDWGSVTLS  201 (453)
T ss_pred             HHhhhcCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCCCcceeehHHHHHH
Confidence               1111                   1122222211 123444444332221111000000  01222245778888888


Q ss_pred             HHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhc-C
Q 010200          177 LLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELA-G  255 (515)
Q Consensus       177 L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l-~  255 (515)
                      +.+..+..| ..+..+-++..+..         ..+.      .-.-.++|.-..+++++++.||.|+|-.|..-..+ |
T Consensus       202 ~~edF~~~g-g~i~~n~~l~g~~~---------n~~~------~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~aa~sg  265 (453)
T KOG2665|consen  202 FGEDFDFMG-GRIYTNFRLQGIAQ---------NKEA------TFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCAALSG  265 (453)
T ss_pred             HHHHHHHhc-ccccccceeccchh---------ccCC------CCCCceEEecCccceeEEeEEEEeccccHhHHHHHhC
Confidence            888898888 78999999999865         1110      02234555555577999999999999987643333 4


Q ss_pred             Ccc
Q 010200          256 FKT  258 (515)
Q Consensus       256 ~~~  258 (515)
                      ...
T Consensus       266 c~~  268 (453)
T KOG2665|consen  266 CEL  268 (453)
T ss_pred             CCC
Confidence            433

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=98.33  E-value=5.6e-06  Score=83.60  Aligned_cols=59  Identities=17%  Similarity=0.147  Sum_probs=46.8

Q ss_pred             hHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeE-EEcCCC--cEEEeeEEEEecCC
Q 010200          170 NKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAK-LDLSDG--TSLYAKLVVGADGG  246 (515)
Q Consensus       170 r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~g--~~~~ad~vV~AdG~  246 (515)
                      -.+|.+.|.+.+++.| ++++.+++|.++..                    .++.++ +...++  .++.+|.||.|+|+
T Consensus       262 G~RL~~aL~~~~~~~G-g~il~g~~V~~i~~--------------------~~~~v~~V~t~~g~~~~l~AD~vVLAaGa  320 (419)
T TIGR03378       262 GIRLEEALKHRFEQLG-GVMLPGDRVLRAEF--------------------EGNRVTRIHTRNHRDIPLRADHFVLASGS  320 (419)
T ss_pred             HHHHHHHHHHHHHHCC-CEEEECcEEEEEEe--------------------eCCeEEEEEecCCccceEECCEEEEccCC
Confidence            3567889999999998 89999999999876                    334344 444555  37999999999999


Q ss_pred             C-ch
Q 010200          247 K-SR  249 (515)
Q Consensus       247 ~-S~  249 (515)
                      | |.
T Consensus       321 w~S~  324 (419)
T TIGR03378       321 FFSN  324 (419)
T ss_pred             CcCH
Confidence            9 76

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.31  E-value=1.2e-06  Score=92.29  Aligned_cols=33  Identities=42%  Similarity=0.553  Sum_probs=31.1

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN   91 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~   91 (515)
                      .|||+||||||+|+++|+.|+++    |.+|+|+|+.
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~~----G~~V~lie~~   37 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAAH----GKKVALFDYV   37 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhC----CCeEEEEecc
Confidence            58999999999999999999996    9999999974

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.31  E-value=4.2e-06  Score=87.54  Aligned_cols=32  Identities=25%  Similarity=0.466  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ||+||||||+|+.+|..|++.    |.+|+|+|+..
T Consensus         3 ~vvviG~G~~G~~~a~~~~~~----g~~v~~~e~~~   34 (466)
T PRK07845          3 RIVIIGGGPGGYEAALVAAQL----GADVTVIERDG   34 (466)
T ss_pred             cEEEECCCHHHHHHHHHHHhC----CCeEEEEEccC
Confidence            799999999999999999996    99999999875

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.30  E-value=6.3e-06  Score=92.87  Aligned_cols=37  Identities=27%  Similarity=0.389  Sum_probs=33.8

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ...+||+|||||.|||++|+.+++.    |.+|+|+||...
T Consensus        11 ~~~~DVlVVG~G~AGl~AAl~Aa~~----G~~V~lleK~~~   47 (897)
T PRK13800         11 RLDCDVLVIGGGTAGTMAALTAAEH----GANVLLLEKAHV   47 (897)
T ss_pred             eeecCEEEECcCHHHHHHHHHHHHC----CCeEEEEecccc
Confidence            3468999999999999999999996    999999999885

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.29  E-value=3.5e-06  Score=87.50  Aligned_cols=36  Identities=19%  Similarity=0.345  Sum_probs=32.1

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      +|+|||||++|+.+|..|++.+  ++.+|+|+|+.+..
T Consensus         3 ~VVIIGgG~aG~~aA~~l~~~~--~~~~I~li~~~~~~   38 (438)
T PRK13512          3 KIIVVGAVAGGATCASQIRRLD--KESDIIIFEKDRDM   38 (438)
T ss_pred             eEEEECCcHHHHHHHHHHHhhC--CCCCEEEEECCCCc
Confidence            7999999999999999998853  47899999999865

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.29  E-value=2.7e-06  Score=87.14  Aligned_cols=38  Identities=21%  Similarity=0.287  Sum_probs=31.7

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      +.+|+|||||+||+.+|..|++.+  ...+|+|+++.+..
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~~~--~~~~I~li~~e~~~   40 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQG--FTGELHLFSDERHL   40 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHhhC--CCCCEEEeCCCCCC
Confidence            457999999999999999999963  23489999988754

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.29  E-value=6.7e-06  Score=85.91  Aligned_cols=33  Identities=30%  Similarity=0.452  Sum_probs=30.8

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      +|+||||||+|+++|..|++.    |.+|+|+||+..
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~----g~~V~lie~~~~   34 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQN----GKNVTLIDEADL   34 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhC----CCcEEEEECCcc
Confidence            799999999999999999996    999999999753

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=98.28  E-value=2.1e-05  Score=73.72  Aligned_cols=44  Identities=20%  Similarity=0.357  Sum_probs=33.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCC---CCCCcEEEEEcCCCCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMP---LTKHLSVAIIDSNPALGKS   97 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~---~~~G~~V~v~E~~~~~~~~   97 (515)
                      +..+|+|||+|..||++|+.+.+..   ..+-.+|+|++-+..+.+.
T Consensus         2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T~   48 (342)
T KOG3923|consen    2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDTT   48 (342)
T ss_pred             CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccccc
Confidence            4578999999999999998877731   1134789999887766433

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.24  E-value=5.4e-06  Score=91.97  Aligned_cols=37  Identities=30%  Similarity=0.415  Sum_probs=33.9

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ...+|+||||||||+++|+.|++.    |++|+|||+.+.+
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~----G~~VtV~Ek~~~~  574 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARA----GHPVTVFEREENA  574 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHc----CCeEEEEeccccc
Confidence            457899999999999999999996    9999999998865

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.24  E-value=9e-06  Score=82.76  Aligned_cols=106  Identities=24%  Similarity=0.341  Sum_probs=79.5

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      .+|+|||||+.|+-+|..|++.    |.+|+++|+.+.+.                   +             ..     
T Consensus       142 ~~vvViGgG~~g~e~A~~L~~~----g~~Vtlv~~~~~~l-------------------~-------------~~-----  180 (377)
T PRK04965        142 QRVLVVGGGLIGTELAMDLCRA----GKAVTLVDNAASLL-------------------A-------------SL-----  180 (377)
T ss_pred             CeEEEECCCHHHHHHHHHHHhc----CCeEEEEecCCccc-------------------c-------------hh-----
Confidence            5799999999999999999995    89999999877430                   0             00     


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                                        +               ...+...+.+.+++.| +++++++++++++.               
T Consensus       181 ------------------~---------------~~~~~~~l~~~l~~~g-V~i~~~~~v~~i~~---------------  211 (377)
T PRK04965        181 ------------------M---------------PPEVSSRLQHRLTEMG-VHLLLKSQLQGLEK---------------  211 (377)
T ss_pred             ------------------C---------------CHHHHHHHHHHHHhCC-CEEEECCeEEEEEc---------------
Confidence                              0               0123345666677777 99999999999975               


Q ss_pred             ccccccCCeeEEEcCCCcEEEeeEEEEecCCCch--hhhhcCC
Q 010200          216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR--VRELAGF  256 (515)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~--vr~~l~~  256 (515)
                           +...+.+.+.+|+++.+|+||.|+|..+.  +.+..+.
T Consensus       212 -----~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~gl  249 (377)
T PRK04965        212 -----TDSGIRATLDSGRSIEVDAVIAAAGLRPNTALARRAGL  249 (377)
T ss_pred             -----cCCEEEEEEcCCcEEECCEEEECcCCCcchHHHHHCCC
Confidence                 23456788889999999999999998654  4444444

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=98.24  E-value=2.1e-06  Score=85.50  Aligned_cols=155  Identities=20%  Similarity=0.244  Sum_probs=77.1

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhH--HHHHHHcCCchhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPAT--ISFFKEIGAWQYVQQ  132 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~l~~lgl~~~~~~  132 (515)
                      .+|+|+||.||++|++|++|...   ...++..|||.+...-..           |..+....  ..+|+.|--.     
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~---~~~~~~f~e~~~~f~Wh~-----------gmll~~~~~q~~fl~Dlvt~-----   62 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEH---GDLKALFLERRPSFSWHP-----------GMLLPGARMQVSFLKDLVTL-----   62 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHH---H---EEEEES-SS--TTG-----------GG--SS-B-SS-TTSSSSTT-----
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhc---CCCCEEEEecCCCCCcCC-----------ccCCCCCccccccccccCcC-----
Confidence            48999999999999999999997   258999999988652111           11111000  1122221100     


Q ss_pred             hhccccceEEEE---eCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCccc
Q 010200          133 HRHAYFDKMQVW---DYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISV  209 (515)
Q Consensus       133 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~  209 (515)
                       .. +.....+.   ...+. ...+-.      ...+...|.++.++|.-.+.+.+ -.++++.+|++|+..        
T Consensus        63 -~~-P~s~~sflnYL~~~~r-l~~f~~------~~~~~p~R~ef~dYl~Wva~~~~-~~v~~~~~V~~I~~~--------  124 (341)
T PF13434_consen   63 -RD-PTSPFSFLNYLHEHGR-LYEFYN------RGYFFPSRREFNDYLRWVAEQLD-NQVRYGSEVTSIEPD--------  124 (341)
T ss_dssp             -T--TTSTTSHHHHHHHTT--HHHHHH------H--SS-BHHHHHHHHHHHHCCGT-TTEEESEEEEEEEEE--------
T ss_pred             -cC-CCCcccHHHHHHHcCC-hhhhhh------cCCCCCCHHHHHHHHHHHHHhCC-CceEECCEEEEEEEe--------
Confidence             00 00000000   00000 000000      00134678999999998888887 568999999999871        


Q ss_pred             CCCCCcccccccCCeeEEEcC----CCcEEEeeEEEEecCCCchhhhhc
Q 010200          210 DSTPSATTLFTKGHLAKLDLS----DGTSLYAKLVVGADGGKSRVRELA  254 (515)
Q Consensus       210 ~~~~~~~~~~~~~~~~~v~~~----~g~~~~ad~vV~AdG~~S~vr~~l  254 (515)
                       .+.       ....++|...    +++++.|+.||.|.|..-.+...+
T Consensus       125 -~~~-------~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~iP~~~  165 (341)
T PF13434_consen  125 -DDG-------DEDLFRVTTRDSDGDGETYRARNVVLATGGQPRIPEWF  165 (341)
T ss_dssp             -EET-------TEEEEEEEEEETTS-EEEEEESEEEE----EE---GGG
T ss_pred             -cCC-------CccEEEEEEeecCCCeeEEEeCeEEECcCCCCCCCcch
Confidence             110       1135777763    345899999999999655555544

>PLN03000 amine oxidase

Probab=98.23  E-value=0.0002  Score=78.39  Aligned_cols=42  Identities=24%  Similarity=0.481  Sum_probs=37.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNF   99 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~   99 (515)
                      ...+|+|||||++||++|..|++.    |++|+|||++..++.+.+
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~----G~~V~VlE~~~riGGRi~  224 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRF----GFKVTVLEGRKRPGGRVY  224 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHC----CCcEEEEEccCcCCCCcc
Confidence            457999999999999999999996    999999999998875543

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=98.21  E-value=5.5e-06  Score=85.57  Aligned_cols=55  Identities=13%  Similarity=0.081  Sum_probs=41.1

Q ss_pred             HHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhh
Q 010200          176 SLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVR  251 (515)
Q Consensus       176 ~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr  251 (515)
                      .+...+...| .+|+++++|++|+.                    .++.+++.+.+|+++.||.||.|.......+
T Consensus       214 ~~~~~~~~~g-~~i~l~~~V~~I~~--------------------~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~  268 (450)
T PF01593_consen  214 ALALAAEELG-GEIRLNTPVTRIER--------------------EDGGVTVTTEDGETIEADAVISAVPPSVLKN  268 (450)
T ss_dssp             HHHHHHHHHG-GGEESSEEEEEEEE--------------------ESSEEEEEETTSSEEEESEEEE-S-HHHHHT
T ss_pred             HHHHHHhhcC-ceeecCCcceeccc--------------------cccccccccccceEEecceeeecCchhhhhh
Confidence            3333344345 68999999999987                    5578999999999999999998887655544

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.21  E-value=4.5e-06  Score=85.66  Aligned_cols=38  Identities=34%  Similarity=0.564  Sum_probs=34.2

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      +.+||++||||||+|..+|+.+++.    |.+|.|+|+....
T Consensus         2 ~~~yDvvVIG~GpaG~~aA~raa~~----G~kvalvE~~~~l   39 (454)
T COG1249           2 MKEYDVVVIGAGPAGYVAAIRAAQL----GLKVALVEKGERL   39 (454)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhC----CCCEEEEeecCCc
Confidence            4579999999999999999999997    7889999999644

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.18  E-value=1.4e-06  Score=91.87  Aligned_cols=40  Identities=33%  Similarity=0.534  Sum_probs=36.6

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      +..++||||||||.|||.+|+.++..    |++|+|+||....+
T Consensus         3 ~~~~~DvvVIG~G~AGl~AAi~aa~~----g~~V~l~~K~~~~r   42 (562)
T COG1053           3 TIHEFDVVVIGGGGAGLRAAIEAAEA----GLKVALLSKAPPKR   42 (562)
T ss_pred             ccccCCEEEECCcHHHHHHHHHHHhc----CCcEEEEEccccCC
Confidence            44679999999999999999999996    89999999998776

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.18  E-value=3.2e-06  Score=84.89  Aligned_cols=39  Identities=33%  Similarity=0.757  Sum_probs=32.9

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      ++|+|||||++|+.+|.+|.+.+-..+. |.|||+.+..+
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~-Isi~e~~~~~G   40 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGL-ISIFEPRPNFG   40 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCc-eEEeccccccC
Confidence            6899999999999999999987432333 99999999874

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=98.18  E-value=2.9e-05  Score=83.70  Aligned_cols=34  Identities=32%  Similarity=0.537  Sum_probs=31.8

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN   91 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~   91 (515)
                      .+|||+|||+||+|.++|+.+++.    |.+|+|+|++
T Consensus       115 ~~yDviVIG~G~gG~~aA~~aa~~----G~kV~lie~~  148 (659)
T PTZ00153        115 EEYDVGIIGCGVGGHAAAINAMER----GLKVIIFTGD  148 (659)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHC----CCcEEEEeCC
Confidence            379999999999999999999996    9999999975

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.17  E-value=7.4e-06  Score=91.02  Aligned_cols=39  Identities=21%  Similarity=0.439  Sum_probs=32.2

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      .+|||||||+||+.+|..|.+.....+++|+||++.+.+
T Consensus         4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~   42 (847)
T PRK14989          4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRI   42 (847)
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCC
Confidence            489999999999999999976421136899999999866

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.16  E-value=1.7e-05  Score=83.11  Aligned_cols=101  Identities=15%  Similarity=0.239  Sum_probs=77.8

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      .-+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.               -.+                     
T Consensus       175 ~~~v~IiGgG~~g~E~A~~l~~~----g~~Vtli~~~~~~l---------------~~~---------------------  214 (461)
T PRK05249        175 PRSLIIYGAGVIGCEYASIFAAL----GVKVTLINTRDRLL---------------SFL---------------------  214 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCeEEEEecCCCcC---------------CcC---------------------
Confidence            35799999999999999999996    89999999877440               000                     


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                                                         -.++...|.+.+++.| ++++.+++|++++.              
T Consensus       215 -----------------------------------d~~~~~~l~~~l~~~g-I~v~~~~~v~~i~~--------------  244 (461)
T PRK05249        215 -----------------------------------DDEISDALSYHLRDSG-VTIRHNEEVEKVEG--------------  244 (461)
T ss_pred             -----------------------------------CHHHHHHHHHHHHHcC-CEEEECCEEEEEEE--------------
Confidence                                               0123345666677777 99999999999975              


Q ss_pred             cccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhh
Q 010200          215 ATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVR  251 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr  251 (515)
                            .+..+.+++.+|+++.+|.||.|.|......
T Consensus       245 ------~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  275 (461)
T PRK05249        245 ------GDDGVIVHLKSGKKIKADCLLYANGRTGNTD  275 (461)
T ss_pred             ------eCCeEEEEECCCCEEEeCEEEEeecCCcccc
Confidence                  2245677777888899999999999877653

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.16  E-value=6.9e-06  Score=82.70  Aligned_cols=38  Identities=26%  Similarity=0.545  Sum_probs=34.4

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ..++||+|||||-+|.-+|+-.+-    +|++|.++|++...
T Consensus        65 ~~~fDVLIIGGGAtGaGcALDA~T----RGLktaLVE~~DF~  102 (680)
T KOG0042|consen   65 THEFDVLIIGGGATGAGCALDAAT----RGLKTALVEAGDFA  102 (680)
T ss_pred             CCcccEEEECCCccCcceeehhhc----ccceeEEEeccccc
Confidence            456999999999999999998888    49999999999876

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=98.16  E-value=3.2e-06  Score=85.58  Aligned_cols=154  Identities=16%  Similarity=0.188  Sum_probs=89.9

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC-CCCCCCCCCCCCCCcEEEeCHhHHHHHHHcC-Cchhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL-GKSNFIKKEDPPDPRVSTVTPATISFFKEIG-AWQYVQ  131 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lg-l~~~~~  131 (515)
                      ..|||+|||||-||+-+|++.+|.    |.+++++--+... +.-.|   +..-.+-+-+.-   ++.++.|| +.....
T Consensus         3 ~~~DVIVIGgGHAG~EAA~AaARm----G~ktlLlT~~~dtig~msC---NPaIGG~~KG~l---vrEIDALGG~Mg~~~   72 (621)
T COG0445           3 KEYDVIVIGGGHAGVEAALAAARM----GAKTLLLTLNLDTIGEMSC---NPAIGGPGKGHL---VREIDALGGLMGKAA   72 (621)
T ss_pred             CCCceEEECCCccchHHHHhhhcc----CCeEEEEEcCCCceeeccc---ccccCCccccee---EEeehhccchHHHhh
Confidence            459999999999999999999997    9999998766542 22334   111111111111   11222222 111111


Q ss_pred             hhhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCC
Q 010200          132 QHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDS  211 (515)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~  211 (515)
                      +...   -.+++.+......+         ...-..+++.....++.+.++...+.+++.+ .|+++..           
T Consensus        73 D~~~---IQ~r~LN~sKGPAV---------ra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~-----------  128 (621)
T COG0445          73 DKAG---IQFRMLNSSKGPAV---------RAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIV-----------  128 (621)
T ss_pred             hhcC---CchhhccCCCcchh---------cchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhh-----------
Confidence            1111   00111111110000         0011246677777788888888888888865 7888765           


Q ss_pred             CCCcccccccC-CeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200          212 TPSATTLFTKG-HLAKLDLSDGTSLYAKLVVGADGGKSR  249 (515)
Q Consensus       212 ~~~~~~~~~~~-~~~~v~~~~g~~~~ad~vV~AdG~~S~  249 (515)
                              +++ ..+.|.+.+|..+.|+.||.++|-+=.
T Consensus       129 --------e~~~~v~GV~t~~G~~~~a~aVVlTTGTFL~  159 (621)
T COG0445         129 --------EEGQRVVGVVTADGPEFHAKAVVLTTGTFLR  159 (621)
T ss_pred             --------cCCCeEEEEEeCCCCeeecCEEEEeeccccc
Confidence                    122 356788899999999999999997543

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=98.15  E-value=9.5e-06  Score=82.21  Aligned_cols=37  Identities=19%  Similarity=0.356  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      +|||||||+||+.+|..|++.. .++.+|+|+|+....
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~-~~~~~I~li~~~~~~   37 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKP-LPGVRVTLINPSSTT   37 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcC-CCCCEEEEECCCCCC
Confidence            4899999999999999996531 147899999988754

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.14  E-value=7.8e-06  Score=85.63  Aligned_cols=35  Identities=29%  Similarity=0.526  Sum_probs=31.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN   91 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~   91 (515)
                      +.|||+||||||+|..+|+.+++.   .|.+|+|+|+.
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~---~g~~V~lie~~   36 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATL---YKKRVAVIDVQ   36 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHh---cCCEEEEEecc
Confidence            469999999999999999999993   17999999985

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=98.14  E-value=7.2e-06  Score=72.77  Aligned_cols=148  Identities=21%  Similarity=0.211  Sum_probs=84.6

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      .||+|||+|-+||++|+..++..  +.++|.|+|..-.|+...|.   +........+-..+.-+|+++|+..+      
T Consensus        77 sDvviVGAGSaGLsAAY~I~~~r--PdlkvaIIE~SVaPGGGaWL---GGQLFSAMvvRKPAhLFL~EigvpYe------  145 (328)
T KOG2960|consen   77 SDVVIVGAGSAGLSAAYVIAKNR--PDLKVAIIESSVAPGGGAWL---GGQLFSAMVVRKPAHLFLQEIGVPYE------  145 (328)
T ss_pred             cceEEECCCccccceeeeeeccC--CCceEEEEEeeecCCCcccc---cchhhhhhhhcChHHHHHHHhCCCcc------
Confidence            59999999999999999998532  58999999999888544441   00000011112222334555544110      


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                                .              ...+-..-+..-+......++..+++++++--+.|.++..         .+..+|
T Consensus       146 ----------d--------------egdYVVVKHAALFtSTvmsk~LalPNVKLFNAtavEDLiv---------k~g~~g  192 (328)
T KOG2960|consen  146 ----------D--------------EGDYVVVKHAALFTSTVMSKVLALPNVKLFNATAVEDLIV---------KPGEKG  192 (328)
T ss_pred             ----------c--------------CCCEEEEeeHHHHHHHHHHHHhcCCcceeechhhhhhhhc---------ccCcCC
Confidence                      0              0111112233456666777777788888887777777755         111211


Q ss_pred             ccccccC----CeeEEEc-CCC-------cEEEeeEEEEecCCCchh
Q 010200          216 TTLFTKG----HLAKLDL-SDG-------TSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       216 ~~~~~~~----~~~~v~~-~~g-------~~~~ad~vV~AdG~~S~v  250 (515)
                         +...    ..|++.. ..|       ..+++.+||-++|..++.
T Consensus       193 ---~~rvaGVVTNWtLV~qnHgtQsCMDPNviea~~vvS~tGHDGPF  236 (328)
T KOG2960|consen  193 ---EVRVAGVVTNWTLVTQNHGTQSCMDPNVIEAAVVVSTTGHDGPF  236 (328)
T ss_pred             ---ceEEEEEEeeeEEeeeccCccccCCCCeeeEEEEEEccCCCCCc
Confidence               0000    0122222 222       368999999999988775

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.14  E-value=9.8e-06  Score=82.51  Aligned_cols=37  Identities=14%  Similarity=0.400  Sum_probs=31.9

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      .+|||||||+||+.+|..|++.+  +..+|+|+++++..
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~--~~~~Itvi~~~~~~   39 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQD--AHIPITLITADSGD   39 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhC--cCCCEEEEeCCCCC
Confidence            48999999999999999998853  46799999998854

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.12  E-value=7.2e-06  Score=85.32  Aligned_cols=38  Identities=32%  Similarity=0.410  Sum_probs=34.4

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ...++|+||||||+||++|..|++.    |++|+|||+.+.+
T Consensus       131 ~~~~~V~IIG~G~aGl~aA~~l~~~----G~~V~vie~~~~~  168 (449)
T TIGR01316       131 STHKKVAVIGAGPAGLACASELAKA----GHSVTVFEALHKP  168 (449)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHC----CCcEEEEecCCCC
Confidence            4568999999999999999999996    9999999998755

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=98.12  E-value=4.3e-06  Score=84.80  Aligned_cols=68  Identities=22%  Similarity=0.302  Sum_probs=49.5

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCC--CCCCCCCCCCcEEEeC----HhHHHHHHHcCCc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSN--FIKKEDPPDPRVSTVT----PATISFFKEIGAW  127 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~--~~~~~~~~~~~~~~l~----~~~~~~l~~lgl~  127 (515)
                      ++|+|+|||+|||++|+.|+.+    |++|+|+|+++.++.+.  |.+..+...--|+.+.    ++.+..|++++..
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~----g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y~n~~~ll~~~~~~   74 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADA----GYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCYYNLLTLLKELPIE   74 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhC----CCceEEEeccCccCceeeeeecCCCCeeeeeeEEechhHHHHHHHhhhCCch
Confidence            3799999999999999999997    99999999999998654  3333333333344332    4556677776543

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.12  E-value=3e-05  Score=80.17  Aligned_cols=37  Identities=19%  Similarity=0.387  Sum_probs=32.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ...+|||||||.||+.+|..|.+.    +++|+|+|+++..
T Consensus         9 ~~~~vVIvGgG~aGl~~a~~L~~~----~~~ItlI~~~~~~   45 (424)
T PTZ00318          9 KKPNVVVLGTGWAGAYFVRNLDPK----KYNITVISPRNHM   45 (424)
T ss_pred             CCCeEEEECCCHHHHHHHHHhCcC----CCeEEEEcCCCCc
Confidence            456899999999999999999763    7899999988754

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.12  E-value=1.2e-05  Score=84.29  Aligned_cols=33  Identities=36%  Similarity=0.540  Sum_probs=31.1

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN   91 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~   91 (515)
                      +|||+||||||+|+.+|+.+++.    |.+|+|+|+.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~----G~~v~lie~~   34 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADY----GAKVMLLDFV   34 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHC----CCeEEEEecc
Confidence            58999999999999999999996    9999999974

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=98.10  E-value=8e-06  Score=90.52  Aligned_cols=37  Identities=27%  Similarity=0.461  Sum_probs=33.7

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ...+|+|||||||||++|..|++.    |++|+|||+.+.+
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~----G~~V~v~e~~~~~  466 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKR----GYDVTVFEALHEI  466 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHC----CCeEEEEecCCCC
Confidence            467999999999999999999996    9999999997655

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.10  E-value=2.3e-05  Score=82.04  Aligned_cols=99  Identities=22%  Similarity=0.346  Sum_probs=74.7

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      -+|+|||||++|+-+|..|++.    |.+|+++|+.+.+.          +     .+                      
T Consensus       173 ~~vvVvGgG~~g~E~A~~l~~~----g~~Vtli~~~~~~l----------~-----~~----------------------  211 (462)
T PRK06416        173 KSLVVIGGGYIGVEFASAYASL----GAEVTIVEALPRIL----------P-----GE----------------------  211 (462)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc----CCeEEEEEcCCCcC----------C-----cC----------------------
Confidence            5799999999999999999996    89999999877430          0     00                      


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                                                        ...+...+.+.+++.| ++++.+++|++++.               
T Consensus       212 ----------------------------------~~~~~~~l~~~l~~~g-V~i~~~~~V~~i~~---------------  241 (462)
T PRK06416        212 ----------------------------------DKEISKLAERALKKRG-IKIKTGAKAKKVEQ---------------  241 (462)
T ss_pred             ----------------------------------CHHHHHHHHHHHHHcC-CEEEeCCEEEEEEE---------------
Confidence                                              0123345566666777 99999999999975               


Q ss_pred             ccccccCCeeEEEcCCC---cEEEeeEEEEecCCCchh
Q 010200          216 TTLFTKGHLAKLDLSDG---TSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       216 ~~~~~~~~~~~v~~~~g---~~~~ad~vV~AdG~~S~v  250 (515)
                           +...+.+.+.++   +++.+|.||.|.|.....
T Consensus       242 -----~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~  274 (462)
T PRK06416        242 -----TDDGVTVTLEDGGKEETLEADYVLVAVGRRPNT  274 (462)
T ss_pred             -----eCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCC
Confidence                 223566666555   579999999999987654

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.09  E-value=7.9e-06  Score=90.65  Aligned_cols=36  Identities=19%  Similarity=0.381  Sum_probs=30.4

Q ss_pred             EEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           58 VAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        58 VvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      |||||||+||+.+|..|.+... .+++|+|||+.+.+
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~-~~~~Itvi~~e~~~   36 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNR-HMFEITIFGEEPHP   36 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCC-CCCeEEEEeCCCCC
Confidence            6899999999999999877521 36899999998865

>PRK07846 mycothione reductase; Reviewed

Probab=98.09  E-value=1.3e-05  Score=83.47  Aligned_cols=32  Identities=22%  Similarity=0.392  Sum_probs=27.4

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      +|||+||||||+|.++|..  +.    |.+|+|+|++.
T Consensus         1 ~yD~vVIG~G~~g~~aa~~--~~----G~~V~lie~~~   32 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDER--FA----DKRIAIVEKGT   32 (451)
T ss_pred             CCCEEEECCCHHHHHHHHH--HC----CCeEEEEeCCC
Confidence            3899999999999988865  33    89999999864

>PRK06116 glutathione reductase; Validated

Probab=98.09  E-value=3.4e-05  Score=80.52  Aligned_cols=101  Identities=18%  Similarity=0.184  Sum_probs=76.4

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      .-+|+|||||++|+-+|..|++.    |.+|+++++.+.+.               ..+.                    
T Consensus       167 ~~~vvViGgG~~g~E~A~~l~~~----g~~Vtlv~~~~~~l---------------~~~~--------------------  207 (450)
T PRK06116        167 PKRVAVVGAGYIAVEFAGVLNGL----GSETHLFVRGDAPL---------------RGFD--------------------  207 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCeEEEEecCCCCc---------------cccC--------------------
Confidence            35799999999999999999996    89999999876430               0000                    


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                                                          .++...+.+.+++.| ++++++++|.+++.              
T Consensus       208 ------------------------------------~~~~~~l~~~L~~~G-V~i~~~~~V~~i~~--------------  236 (450)
T PRK06116        208 ------------------------------------PDIRETLVEEMEKKG-IRLHTNAVPKAVEK--------------  236 (450)
T ss_pred             ------------------------------------HHHHHHHHHHHHHCC-cEEECCCEEEEEEE--------------
Confidence                                                123345666677777 99999999999975              


Q ss_pred             cccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200          215 ATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                           +.+..+.+.+.+|+++.+|.||.|.|.....
T Consensus       237 -----~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~  267 (450)
T PRK06116        237 -----NADGSLTLTLEDGETLTVDCLIWAIGREPNT  267 (450)
T ss_pred             -----cCCceEEEEEcCCcEEEeCEEEEeeCCCcCC
Confidence                 0112366777888899999999999986654

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.08  E-value=2.8e-05  Score=79.71  Aligned_cols=98  Identities=21%  Similarity=0.306  Sum_probs=75.3

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      -+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.                          ..      .     
T Consensus       145 ~~vvViGgG~ig~E~A~~l~~~----g~~Vtlv~~~~~~l--------------------------~~------~-----  183 (396)
T PRK09754        145 RSVVIVGAGTIGLELAASATQR----RCKVTVIELAATVM--------------------------GR------N-----  183 (396)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc----CCeEEEEecCCcch--------------------------hh------h-----
Confidence            4799999999999999999996    89999999877440                          00      0     


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                                                       ....+...+.+.+++.| +++++++++++++.               
T Consensus       184 ---------------------------------~~~~~~~~l~~~l~~~G-V~i~~~~~V~~i~~---------------  214 (396)
T PRK09754        184 ---------------------------------APPPVQRYLLQRHQQAG-VRILLNNAIEHVVD---------------  214 (396)
T ss_pred             ---------------------------------cCHHHHHHHHHHHHHCC-CEEEeCCeeEEEEc---------------
Confidence                                             00123355666677777 99999999999853               


Q ss_pred             ccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200          216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR  249 (515)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~  249 (515)
                            +..+.+.+.+|+++.+|+||.|.|....
T Consensus       215 ------~~~~~v~l~~g~~i~aD~Vv~a~G~~pn  242 (396)
T PRK09754        215 ------GEKVELTLQSGETLQADVVIYGIGISAN  242 (396)
T ss_pred             ------CCEEEEEECCCCEEECCEEEECCCCChh
Confidence                  1346677888989999999999998654

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=98.08  E-value=7.2e-06  Score=81.28  Aligned_cols=158  Identities=17%  Similarity=0.209  Sum_probs=88.2

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC-CCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhh
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA-LGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQ  131 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~  131 (515)
                      ...|||||||||-||+-+|.+.+|.    |.+.+++-.+-. .+.-+|+-. -...++|..+  +-+++|.  |+-..+-
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR~----Ga~TlLlT~~ld~Ig~msCNPs-fGGigKg~Lm--rEVDALd--Gl~~rvc   96 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAARL----GARTLLLTHNLDTIGEMSCNPS-FGGIGKGHLM--REVDALD--GLCSRVC   96 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHhc----CCceEEeecccccccccccCcc-cCCcccceee--eeehhhc--chHhhhh
Confidence            4679999999999999999999997    889888876643 444445111 1111222222  1122221  1111111


Q ss_pred             hhhccccceEEEEeCCCccceeeecccCCCC-cceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccC
Q 010200          132 QHRHAYFDKMQVWDYTGLGYTKYNARDVNKE-ILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVD  210 (515)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~  210 (515)
                      +.     ..+++        ..++....+.. ..-..++|..+-..+.+.+....+.+|+.+ .|.++..         +
T Consensus        97 D~-----s~vq~--------k~LNrs~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~ire~-~V~dliv---------~  153 (679)
T KOG2311|consen   97 DQ-----SGVQY--------KVLNRSKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEIREG-AVADLIV---------E  153 (679)
T ss_pred             hh-----hhhhH--------HHhhccCCCcccChHHhhhHHHHHHHHHHHhccCCcchhhhh-hhhheee---------c
Confidence            11     11110        00000000000 000246677777777777766666778866 7777765         2


Q ss_pred             CCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCC
Q 010200          211 STPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGK  247 (515)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~  247 (515)
                      +.+++     ......|...||..+.++-||..+|-+
T Consensus       154 ~~~~~-----~~~~~gV~l~dgt~v~a~~VilTTGTF  185 (679)
T KOG2311|consen  154 DPDDG-----HCVVSGVVLVDGTVVYAESVILTTGTF  185 (679)
T ss_pred             cCCCC-----ceEEEEEEEecCcEeccceEEEeeccc
Confidence            22222     222344677899999999999999974

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.08  E-value=3.6e-06  Score=87.55  Aligned_cols=45  Identities=20%  Similarity=0.474  Sum_probs=39.6

Q ss_pred             CCCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCC
Q 010200           51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNF   99 (515)
Q Consensus        51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~   99 (515)
                      ...++.+|||||||+|||+||..|.+.    |++|+|+|.+..++.+..
T Consensus        11 ~~~~~~~VIVIGAGiaGLsAArqL~~~----G~~V~VLEARdRvGGRI~   55 (501)
T KOG0029|consen   11 EAGKKKKVIVIGAGLAGLSAARQLQDF----GFDVLVLEARDRVGGRIY   55 (501)
T ss_pred             cccCCCcEEEECCcHHHHHHHHHHHHc----CCceEEEeccCCcCceeE
Confidence            344568999999999999999999997    999999999999986543

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.07  E-value=1.8e-05  Score=74.78  Aligned_cols=35  Identities=23%  Similarity=0.521  Sum_probs=31.0

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      .|||||+|.|||+++..+-..    |-.|+++|+....+
T Consensus        11 pvvVIGgGLAGLsasn~iin~----gg~V~llek~~s~G   45 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINK----GGIVILLEKAGSIG   45 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhc----CCeEEEEeccCCcC
Confidence            599999999999999999885    55699999998774

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=98.06  E-value=8e-06  Score=89.57  Aligned_cols=38  Identities=26%  Similarity=0.345  Sum_probs=33.7

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ....+|+|||||||||++|+.|++.    |++|+|||+.+..
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~----Gh~Vtv~E~~~i~  418 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRS----GHNVTAIDGLKIT  418 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhC----CCeEEEEcccccc
Confidence            3567999999999999999999995    9999999987643

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=98.04  E-value=8.9e-06  Score=92.10  Aligned_cols=37  Identities=24%  Similarity=0.384  Sum_probs=33.7

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ...+|+|||||||||++|..|++.    |++|+|||+.+.+
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~----G~~VtV~E~~~~~  465 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKY----GVDVTVYEALHVV  465 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc----CCcEEEEecCCCC
Confidence            357999999999999999999996    9999999998765

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.03  E-value=1.1e-05  Score=84.24  Aligned_cols=38  Identities=29%  Similarity=0.405  Sum_probs=34.2

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ....+|+||||||+|+++|..|++.    |++|+|||+.+.+
T Consensus       138 ~~~~~VvIIGgGpaGl~aA~~l~~~----g~~V~lie~~~~~  175 (457)
T PRK11749        138 KTGKKVAVIGAGPAGLTAAHRLARK----GYDVTIFEARDKA  175 (457)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhC----CCeEEEEccCCCC
Confidence            3457999999999999999999996    9999999998755

>PLN02507 glutathione reductase

Probab=98.01  E-value=5.2e-05  Score=79.89  Aligned_cols=99  Identities=15%  Similarity=0.157  Sum_probs=76.2

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      -+|+|||||+.|+-+|..|++.    |.+|+|+++.+.+.               -.+.                     
T Consensus       204 k~vvVIGgG~ig~E~A~~l~~~----G~~Vtli~~~~~~l---------------~~~d---------------------  243 (499)
T PLN02507        204 KRAVVLGGGYIAVEFASIWRGM----GATVDLFFRKELPL---------------RGFD---------------------  243 (499)
T ss_pred             CeEEEECCcHHHHHHHHHHHHc----CCeEEEEEecCCcC---------------cccC---------------------
Confidence            4799999999999999999996    89999999876430               0000                     


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                                                         .++...+.+.+++.| ++++.+++|++++.               
T Consensus       244 -----------------------------------~~~~~~l~~~l~~~G-I~i~~~~~V~~i~~---------------  272 (499)
T PLN02507        244 -----------------------------------DEMRAVVARNLEGRG-INLHPRTNLTQLTK---------------  272 (499)
T ss_pred             -----------------------------------HHHHHHHHHHHHhCC-CEEEeCCEEEEEEE---------------
Confidence                                               123344566666777 99999999999975               


Q ss_pred             ccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200          216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                           .++.+.+.+.+|+++.+|.||.|.|.....
T Consensus       273 -----~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~  302 (499)
T PLN02507        273 -----TEGGIKVITDHGEEFVADVVLFATGRAPNT  302 (499)
T ss_pred             -----eCCeEEEEECCCcEEEcCEEEEeecCCCCC
Confidence                 224567777788889999999999987665

>TIGR03452 mycothione_red mycothione reductase

Probab=98.00  E-value=1.1e-05  Score=84.03  Aligned_cols=32  Identities=19%  Similarity=0.325  Sum_probs=27.2

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      +|||+||||||+|..+|..  ++    |.+|+|+|++.
T Consensus         2 ~yD~vvIG~G~~g~~aa~~--~~----g~~V~lie~~~   33 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPR--FA----DKRIAIVEKGT   33 (452)
T ss_pred             CcCEEEECCCHHHHHHHHH--HC----CCeEEEEeCCC
Confidence            5999999999999888643  44    89999999865

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.99  E-value=6.1e-05  Score=78.74  Aligned_cols=99  Identities=22%  Similarity=0.327  Sum_probs=72.5

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      -+|+|||||++|+-+|..|++.    |.+|+|+|+.+.+.                                        
T Consensus       171 ~~vvIIGgG~iG~E~A~~l~~~----g~~Vtli~~~~~ll----------------------------------------  206 (458)
T PRK06912        171 SSLLIVGGGVIGCEFASIYSRL----GTKVTIVEMAPQLL----------------------------------------  206 (458)
T ss_pred             CcEEEECCCHHHHHHHHHHHHc----CCeEEEEecCCCcC----------------------------------------
Confidence            4799999999999999999996    89999999876430                                        


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                       +          .                   . -.++.+.+.+.+++.| ++++++++|++++.               
T Consensus       207 -~----------~-------------------~-d~e~~~~l~~~L~~~G-I~i~~~~~V~~i~~---------------  239 (458)
T PRK06912        207 -P----------G-------------------E-DEDIAHILREKLENDG-VKIFTGAALKGLNS---------------  239 (458)
T ss_pred             -c----------c-------------------c-cHHHHHHHHHHHHHCC-CEEEECCEEEEEEE---------------
Confidence             0          0                   0 0123455666777777 99999999999965               


Q ss_pred             ccccccCCeeEEEcCCC-cEEEeeEEEEecCCCchh
Q 010200          216 TTLFTKGHLAKLDLSDG-TSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       216 ~~~~~~~~~~~v~~~~g-~~~~ad~vV~AdG~~S~v  250 (515)
                           ....+.+...++ .++.+|+||.|+|....+
T Consensus       240 -----~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~  270 (458)
T PRK06912        240 -----YKKQALFEYEGSIQEVNAEFVLVSVGRKPRV  270 (458)
T ss_pred             -----cCCEEEEEECCceEEEEeCEEEEecCCccCC
Confidence                 223344443222 369999999999987765

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=97.99  E-value=3.9e-05  Score=76.64  Aligned_cols=41  Identities=22%  Similarity=0.465  Sum_probs=35.3

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSN   98 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~   98 (515)
                      ..+|||||||+|||++|..|.+.+   +.+|+|+|.....+.+.
T Consensus        21 ~~kIvIIGAG~AGLaAA~rLle~g---f~~~~IlEa~dRIGGRI   61 (498)
T KOG0685|consen   21 NAKIVIIGAGIAGLAAATRLLENG---FIDVLILEASDRIGGRI   61 (498)
T ss_pred             CceEEEECCchHHHHHHHHHHHhC---CceEEEEEeccccCceE
Confidence            358999999999999999999763   67999999999886543

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=97.99  E-value=6e-05  Score=78.49  Aligned_cols=99  Identities=19%  Similarity=0.269  Sum_probs=74.9

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      -+|+|||||++|+-+|..|++.    |.+|+|+|+.+.+.               ..+                      
T Consensus       167 ~~vvVIGgG~~g~E~A~~l~~~----G~~Vtli~~~~~~l---------------~~~----------------------  205 (446)
T TIGR01424       167 KSILILGGGYIAVEFAGIWRGL----GVQVTLIYRGELIL---------------RGF----------------------  205 (446)
T ss_pred             CeEEEECCcHHHHHHHHHHHHc----CCeEEEEEeCCCCC---------------ccc----------------------
Confidence            4799999999999999999986    89999999876330               000                      


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                                                        -.++...+.+.+++.| ++++.+++|++++.               
T Consensus       206 ----------------------------------d~~~~~~l~~~l~~~g-V~i~~~~~v~~i~~---------------  235 (446)
T TIGR01424       206 ----------------------------------DDDMRALLARNMEGRG-IRIHPQTSLTSITK---------------  235 (446)
T ss_pred             ----------------------------------CHHHHHHHHHHHHHCC-CEEEeCCEEEEEEE---------------
Confidence                                              0123344556666777 99999999999975               


Q ss_pred             ccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200          216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                           .+..+.+.+.+|+++.+|.||.|.|.....
T Consensus       236 -----~~~~~~v~~~~g~~i~~D~viva~G~~pn~  265 (446)
T TIGR01424       236 -----TDDGLKVTLSHGEEIVADVVLFATGRSPNT  265 (446)
T ss_pred             -----cCCeEEEEEcCCcEeecCEEEEeeCCCcCC
Confidence                 223466777788889999999999986554

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK07208 hypothetical protein; Provisional

Probab=97.99  E-value=6.7e-06  Score=86.57  Aligned_cols=41  Identities=22%  Similarity=0.516  Sum_probs=36.9

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS   97 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~   97 (515)
                      ++..||+|||||++||++|+.|++.    |++|+|+|+.+.++..
T Consensus         2 ~~~~~vvIiGaGisGL~aA~~L~~~----g~~v~v~E~~~~~GG~   42 (479)
T PRK07208          2 TNKKSVVIIGAGPAGLTAAYELLKR----GYPVTVLEADPVVGGI   42 (479)
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHC----CCcEEEEecCCCCCce
Confidence            4668999999999999999999996    9999999999987643

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.98  E-value=5.7e-05  Score=78.55  Aligned_cols=99  Identities=14%  Similarity=0.215  Sum_probs=72.9

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      .-+|+|||||++|+-+|..|++.    |.+|+|+|+.+.+.                             .         
T Consensus       157 ~~~vvIIGgG~~g~e~A~~l~~~----g~~Vtli~~~~~~l-----------------------------~---------  194 (438)
T PRK07251        157 PERLGIIGGGNIGLEFAGLYNKL----GSKVTVLDAASTIL-----------------------------P---------  194 (438)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCeEEEEecCCccC-----------------------------C---------
Confidence            34799999999999999999996    89999999987430                             0         


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                        .                               ....+...+.+.+++.| ++++.+++|++++.              
T Consensus       195 --~-------------------------------~~~~~~~~~~~~l~~~G-I~i~~~~~V~~i~~--------------  226 (438)
T PRK07251        195 --R-------------------------------EEPSVAALAKQYMEEDG-ITFLLNAHTTEVKN--------------  226 (438)
T ss_pred             --C-------------------------------CCHHHHHHHHHHHHHcC-CEEEcCCEEEEEEe--------------
Confidence              0                               00122334556666777 99999999999965              


Q ss_pred             cccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200          215 ATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                            ++..+.+.. +++++.+|.||.|.|.....
T Consensus       227 ------~~~~v~v~~-~g~~i~~D~viva~G~~p~~  255 (438)
T PRK07251        227 ------DGDQVLVVT-EDETYRFDALLYATGRKPNT  255 (438)
T ss_pred             ------cCCEEEEEE-CCeEEEcCEEEEeeCCCCCc
Confidence                  223455543 56689999999999987654

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.98  E-value=6.3e-05  Score=67.54  Aligned_cols=119  Identities=18%  Similarity=0.160  Sum_probs=78.8

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      ..-+|+|||.|||+-++|+.++|+    .++.++||-.-.-+        ..+   |..+.                   
T Consensus         7 h~e~v~IiGSGPAa~tAAiYaara----elkPllfEG~~~~~--------i~p---GGQLt-------------------   52 (322)
T KOG0404|consen    7 HNENVVIIGSGPAAHTAAIYAARA----ELKPLLFEGMMANG--------IAP---GGQLT-------------------   52 (322)
T ss_pred             eeeeEEEEccCchHHHHHHHHhhc----ccCceEEeeeeccC--------cCC---Cceee-------------------
Confidence            345899999999999999999997    78999999544220        000   00000                   


Q ss_pred             hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (515)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~  213 (515)
                                        ...+...++.-+  -.+.-.+|.+.++++.++.| .+|+.. .|.++..             
T Consensus        53 ------------------TTT~veNfPGFP--dgi~G~~l~d~mrkqs~r~G-t~i~tE-tVskv~~-------------   97 (322)
T KOG0404|consen   53 ------------------TTTDVENFPGFP--DGITGPELMDKMRKQSERFG-TEIITE-TVSKVDL-------------   97 (322)
T ss_pred             ------------------eeeccccCCCCC--cccccHHHHHHHHHHHHhhc-ceeeee-ehhhccc-------------
Confidence                              000001111111  12566789999999999998 788775 7777765             


Q ss_pred             CcccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200          214 SATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR  249 (515)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~  249 (515)
                             .....++.. +...+.+|.||.|+|+..+
T Consensus        98 -------sskpF~l~t-d~~~v~~~avI~atGAsAk  125 (322)
T KOG0404|consen   98 -------SSKPFKLWT-DARPVTADAVILATGASAK  125 (322)
T ss_pred             -------cCCCeEEEe-cCCceeeeeEEEeccccee
Confidence                   334566655 4556999999999998543

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.96  E-value=7.9e-05  Score=78.04  Aligned_cols=99  Identities=18%  Similarity=0.226  Sum_probs=76.0

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      -+|+|||||..|+-+|..|++.    |.+|+++|+.+.+..               ...                     
T Consensus       178 ~~vvVIGgG~ig~E~A~~l~~~----g~~Vtli~~~~~~l~---------------~~d---------------------  217 (466)
T PRK07845        178 EHLIVVGSGVTGAEFASAYTEL----GVKVTLVSSRDRVLP---------------GED---------------------  217 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc----CCeEEEEEcCCcCCC---------------CCC---------------------
Confidence            4799999999999999999996    899999998774400               000                     


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                                                         ..+...+.+.+++.| ++++.++++++++.               
T Consensus       218 -----------------------------------~~~~~~l~~~L~~~g-V~i~~~~~v~~v~~---------------  246 (466)
T PRK07845        218 -----------------------------------ADAAEVLEEVFARRG-MTVLKRSRAESVER---------------  246 (466)
T ss_pred             -----------------------------------HHHHHHHHHHHHHCC-cEEEcCCEEEEEEE---------------
Confidence                                               112344566666777 99999999999965               


Q ss_pred             ccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200          216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                           ..+.+.+.+.+|+++.+|.||.|.|.....
T Consensus       247 -----~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~  276 (466)
T PRK07845        247 -----TGDGVVVTLTDGRTVEGSHALMAVGSVPNT  276 (466)
T ss_pred             -----eCCEEEEEECCCcEEEecEEEEeecCCcCC
Confidence                 224467777788899999999999987664

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=97.96  E-value=6.9e-05  Score=78.06  Aligned_cols=100  Identities=14%  Similarity=0.154  Sum_probs=75.3

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      -+|+|||||..|+-+|..|++.    |.+|+|+|+.+.+.               -.+                      
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~----g~~Vtli~~~~~il---------------~~~----------------------  205 (450)
T TIGR01421       167 KRVVIVGAGYIAVELAGVLHGL----GSETHLVIRHERVL---------------RSF----------------------  205 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc----CCcEEEEecCCCCC---------------ccc----------------------
Confidence            5899999999999999999996    89999999887540               000                      


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                                                        -..+...+.+.+++.| ++++.++++++++.               
T Consensus       206 ----------------------------------d~~~~~~~~~~l~~~g-I~i~~~~~v~~i~~---------------  235 (450)
T TIGR01421       206 ----------------------------------DSMISETITEEYEKEG-INVHKLSKPVKVEK---------------  235 (450)
T ss_pred             ----------------------------------CHHHHHHHHHHHHHcC-CEEEcCCEEEEEEE---------------
Confidence                                              0123345666666677 99999999999975               


Q ss_pred             ccccccCCeeEEEcCCC-cEEEeeEEEEecCCCchh
Q 010200          216 TTLFTKGHLAKLDLSDG-TSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       216 ~~~~~~~~~~~v~~~~g-~~~~ad~vV~AdG~~S~v  250 (515)
                          +....+.+++.+| +++.+|.||.|.|.....
T Consensus       236 ----~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~  267 (450)
T TIGR01421       236 ----TVEGKLVIHFEDGKSIDDVDELIWAIGRKPNT  267 (450)
T ss_pred             ----eCCceEEEEECCCcEEEEcCEEEEeeCCCcCc
Confidence                0112356777777 579999999999987665

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.95  E-value=2.3e-05  Score=81.96  Aligned_cols=37  Identities=35%  Similarity=0.521  Sum_probs=33.9

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ...+|+||||||+|+++|..|++.    |++|+|||+.+.+
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~----G~~V~i~e~~~~~  176 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARA----GVQVVVFDRHPEI  176 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHc----CCeEEEEecCCCC
Confidence            457999999999999999999996    9999999998865

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=97.95  E-value=4.8e-05  Score=73.69  Aligned_cols=38  Identities=37%  Similarity=0.618  Sum_probs=35.4

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      ..|||+|||+||.|-.+|+..++.    |++.+++|++..++
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQl----GlkTacvEkr~~LG   75 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQL----GLKTACVEKRGTLG   75 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHh----cceeEEEeccCccC
Confidence            579999999999999999999997    99999999988773

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=1.3e-05  Score=76.48  Aligned_cols=114  Identities=24%  Similarity=0.379  Sum_probs=80.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEE-cCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAII-DSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~-E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (515)
                      ..|||+||||||||.++|+..+|.    |++.-|+ ||-.                 |-.        |+-+++      
T Consensus       210 ~~yDVLvVGgGPAgaaAAiYaARK----GiRTGl~aerfG-----------------GQv--------ldT~~I------  254 (520)
T COG3634         210 DAYDVLVVGGGPAGAAAAIYAARK----GIRTGLVAERFG-----------------GQV--------LDTMGI------  254 (520)
T ss_pred             CCceEEEEcCCcchhHHHHHHHhh----cchhhhhhhhhC-----------------Cee--------ccccch------
Confidence            469999999999999999999995    8876544 3322                 101        111111      


Q ss_pred             hhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCC
Q 010200          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (515)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~  212 (515)
                            ..          .+..+           ..+-.+|...|.++++++. +++....+.+.++.         .  
T Consensus       255 ------EN----------fIsv~-----------~teGpkl~~ale~Hv~~Y~-vDimn~qra~~l~~---------a--  295 (520)
T COG3634         255 ------EN----------FISVP-----------ETEGPKLAAALEAHVKQYD-VDVMNLQRASKLEP---------A--  295 (520)
T ss_pred             ------hh----------eeccc-----------cccchHHHHHHHHHHhhcC-chhhhhhhhhccee---------c--
Confidence                  00          00000           1234578899999999998 89988888888875         1  


Q ss_pred             CCcccccccCCeeEEEcCCCcEEEeeEEEEecCCC
Q 010200          213 PSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGK  247 (515)
Q Consensus       213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~  247 (515)
                            .+.++-.+|++++|-.+.++-||.++|++
T Consensus       296 ------~~~~~l~ev~l~nGavLkaktvIlstGAr  324 (520)
T COG3634         296 ------AVEGGLIEVELANGAVLKARTVILATGAR  324 (520)
T ss_pred             ------CCCCccEEEEecCCceeccceEEEecCcc
Confidence                  11346789999999999999999999984

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=97.93  E-value=9.9e-05  Score=75.89  Aligned_cols=101  Identities=21%  Similarity=0.324  Sum_probs=79.6

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      .+-.++|||||+.|+=.|..+++.    |.+|+|+|+.+.+-                             .   .    
T Consensus       172 lP~~lvIiGgG~IGlE~a~~~~~L----G~~VTiie~~~~iL-----------------------------p---~----  211 (454)
T COG1249         172 LPKSLVIVGGGYIGLEFASVFAAL----GSKVTVVERGDRIL-----------------------------P---G----  211 (454)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc----CCcEEEEecCCCCC-----------------------------C---c----
Confidence            345799999999999999999998    99999999998651                             0   0    


Q ss_pred             hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (515)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~  213 (515)
                                                         .-.++.+.+.+.+++.| ++++.+++++.++.             
T Consensus       212 -----------------------------------~D~ei~~~~~~~l~~~g-v~i~~~~~v~~~~~-------------  242 (454)
T COG1249         212 -----------------------------------EDPEISKELTKQLEKGG-VKILLNTKVTAVEK-------------  242 (454)
T ss_pred             -----------------------------------CCHHHHHHHHHHHHhCC-eEEEccceEEEEEe-------------
Confidence                                               00245566777777744 99999999999976             


Q ss_pred             CcccccccCCeeEEEcCCCc--EEEeeEEEEecCCCchh
Q 010200          214 SATTLFTKGHLAKLDLSDGT--SLYAKLVVGADGGKSRV  250 (515)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~--~~~ad~vV~AdG~~S~v  250 (515)
                             .+..+.+.+++|.  ++.+|.|+.|.|....+
T Consensus       243 -------~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~  274 (454)
T COG1249         243 -------KDDGVLVTLEDGEGGTIEADAVLVAIGRKPNT  274 (454)
T ss_pred             -------cCCeEEEEEecCCCCEEEeeEEEEccCCccCC
Confidence                   3333888888776  78999999999986655

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=97.92  E-value=0.00038  Score=69.47  Aligned_cols=63  Identities=17%  Similarity=0.237  Sum_probs=52.3

Q ss_pred             EEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCee-EEEcCCCcEEEeeEEEEec
Q 010200          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLA-KLDLSDGTSLYAKLVVGAD  244 (515)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~g~~~~ad~vV~Ad  244 (515)
                      ..++...+...|.+.+.+.| ++++.+++|++++.                    .++.+ .|.+.+| ++.||.||.|+
T Consensus       132 g~v~p~~l~~~l~~~~~~~g-~~~~~~~~v~~i~~--------------------~~~~~~~v~~~~g-~~~a~~vV~a~  189 (337)
T TIGR02352       132 AHVDPRALLKALEKALEKLG-VEIIEHTEVQHIEI--------------------RGEKVTAIVTPSG-DVQADQVVLAA  189 (337)
T ss_pred             ceEChHHHHHHHHHHHHHcC-CEEEccceEEEEEe--------------------eCCEEEEEEcCCC-EEECCEEEEcC
Confidence            46788999999999999998 99999999999976                    23333 4666666 79999999999


Q ss_pred             CCCchh
Q 010200          245 GGKSRV  250 (515)
Q Consensus       245 G~~S~v  250 (515)
                      |+++.-
T Consensus       190 G~~~~~  195 (337)
T TIGR02352       190 GAWAGE  195 (337)
T ss_pred             Chhhhh
Confidence            999864

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.91  E-value=6.2e-05  Score=83.64  Aligned_cols=99  Identities=22%  Similarity=0.371  Sum_probs=74.8

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      .+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.                          ..     .+     
T Consensus       141 k~vvVVGgG~~GlE~A~~L~~~----G~~Vtvv~~~~~ll--------------------------~~-----~l-----  180 (785)
T TIGR02374       141 KKAAVIGGGLLGLEAAVGLQNL----GMDVSVIHHAPGLM--------------------------AK-----QL-----  180 (785)
T ss_pred             CeEEEECCCHHHHHHHHHHHhc----CCeEEEEccCCchh--------------------------hh-----hc-----
Confidence            4799999999999999999996    99999999876330                          00     00     


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                                                        -..+...+.+.+++.| ++++++++++++..               
T Consensus       181 ----------------------------------d~~~~~~l~~~l~~~G-V~v~~~~~v~~i~~---------------  210 (785)
T TIGR02374       181 ----------------------------------DQTAGRLLQRELEQKG-LTFLLEKDTVEIVG---------------  210 (785)
T ss_pred             ----------------------------------CHHHHHHHHHHHHHcC-CEEEeCCceEEEEc---------------
Confidence                                              0112344566667777 99999999999864               


Q ss_pred             ccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200          216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR  249 (515)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~  249 (515)
                           ++....+.+.+|+++.+|+||.|.|....
T Consensus       211 -----~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn  239 (785)
T TIGR02374       211 -----ATKADRIRFKDGSSLEADLIVMAAGIRPN  239 (785)
T ss_pred             -----CCceEEEEECCCCEEEcCEEEECCCCCcC
Confidence                 22345677889999999999999997643

>PRK07846 mycothione reductase; Reviewed

Probab=97.91  E-value=0.0001  Score=76.78  Aligned_cols=99  Identities=15%  Similarity=0.279  Sum_probs=72.5

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      .-+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.               -.+.                    
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~----G~~Vtli~~~~~ll---------------~~~d--------------------  206 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVFSAL----GVRVTVVNRSGRLL---------------RHLD--------------------  206 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCeEEEEEcCCccc---------------cccC--------------------
Confidence            35899999999999999999996    89999999877430               0000                    


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                                                          .++.+.+.+. .+.+ ++++.++++++++.              
T Consensus       207 ------------------------------------~~~~~~l~~l-~~~~-v~i~~~~~v~~i~~--------------  234 (451)
T PRK07846        207 ------------------------------------DDISERFTEL-ASKR-WDVRLGRNVVGVSQ--------------  234 (451)
T ss_pred             ------------------------------------HHHHHHHHHH-HhcC-eEEEeCCEEEEEEE--------------
Confidence                                                0111223222 2345 89999999999965              


Q ss_pred             cccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200          215 ATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                            .+..+.+.+.+|+++.+|.||.|.|.....
T Consensus       235 ------~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~  264 (451)
T PRK07846        235 ------DGSGVTLRLDDGSTVEADVLLVATGRVPNG  264 (451)
T ss_pred             ------cCCEEEEEECCCcEeecCEEEEEECCccCc
Confidence                  234567777788899999999999987654

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=97.91  E-value=4.4e-05  Score=72.54  Aligned_cols=37  Identities=35%  Similarity=0.451  Sum_probs=34.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ..+||||||+|.|||.+|..|+.+    |.+|+|+|+...-
T Consensus         4 ~~~dvivvgaglaglvaa~elA~a----G~~V~ildQEgeq   40 (552)
T COG3573           4 LTADVIVVGAGLAGLVAAAELADA----GKRVLILDQEGEQ   40 (552)
T ss_pred             ccccEEEECccHHHHHHHHHHHhc----CceEEEEcccccc
Confidence            468999999999999999999996    9999999998765

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.90  E-value=8.8e-05  Score=77.92  Aligned_cols=99  Identities=15%  Similarity=0.279  Sum_probs=73.3

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      -+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.          .     ..                      
T Consensus       184 ~~vvVvGgG~~g~E~A~~l~~~----g~~Vtli~~~~~~l----------~-----~~----------------------  222 (475)
T PRK06327        184 KKLAVIGAGVIGLELGSVWRRL----GAEVTILEALPAFL----------A-----AA----------------------  222 (475)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc----CCeEEEEeCCCccC----------C-----cC----------------------
Confidence            5899999999999999999996    89999999877430          0     00                      


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                                                        -.++...+.+.+++.| ++++.+++|++++.               
T Consensus       223 ----------------------------------d~~~~~~~~~~l~~~g-i~i~~~~~v~~i~~---------------  252 (475)
T PRK06327        223 ----------------------------------DEQVAKEAAKAFTKQG-LDIHLGVKIGEIKT---------------  252 (475)
T ss_pred             ----------------------------------CHHHHHHHHHHHHHcC-cEEEeCcEEEEEEE---------------
Confidence                                              0123345556666677 99999999999975               


Q ss_pred             ccccccCCeeEEEcCC--C--cEEEeeEEEEecCCCchh
Q 010200          216 TTLFTKGHLAKLDLSD--G--TSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       216 ~~~~~~~~~~~v~~~~--g--~~~~ad~vV~AdG~~S~v  250 (515)
                           ....+.+.+.+  |  +++.+|.||.|.|.....
T Consensus       253 -----~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~  286 (475)
T PRK06327        253 -----GGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNT  286 (475)
T ss_pred             -----cCCEEEEEEEeCCCceeEEEcCEEEEccCCccCC
Confidence                 22345555543  3  369999999999987664

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.89  E-value=8.9e-05  Score=77.00  Aligned_cols=94  Identities=12%  Similarity=0.223  Sum_probs=72.3

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      -+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.               -.+                      
T Consensus       149 ~~vvViGgG~ig~E~A~~l~~~----g~~Vtli~~~~~l~---------------~~~----------------------  187 (438)
T PRK13512        149 DKALVVGAGYISLEVLENLYER----GLHPTLIHRSDKIN---------------KLM----------------------  187 (438)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC----CCcEEEEecccccc---------------hhc----------------------
Confidence            4799999999999999999996    89999999877430               000                      


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                                                        -.++...+.+.+++.| ++++++++|++++.               
T Consensus       188 ----------------------------------d~~~~~~l~~~l~~~g-I~i~~~~~v~~i~~---------------  217 (438)
T PRK13512        188 ----------------------------------DADMNQPILDELDKRE-IPYRLNEEIDAING---------------  217 (438)
T ss_pred             ----------------------------------CHHHHHHHHHHHHhcC-CEEEECCeEEEEeC---------------
Confidence                                              0123345666677777 99999999999853               


Q ss_pred             ccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200          216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR  249 (515)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~  249 (515)
                             .  .+++++|+++.+|.||.|.|....
T Consensus       218 -------~--~v~~~~g~~~~~D~vl~a~G~~pn  242 (438)
T PRK13512        218 -------N--EVTFKSGKVEHYDMIIEGVGTHPN  242 (438)
T ss_pred             -------C--EEEECCCCEEEeCEEEECcCCCcC
Confidence                   2  455667888999999999998654

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=97.89  E-value=0.0001  Score=77.36  Aligned_cols=102  Identities=18%  Similarity=0.337  Sum_probs=72.9

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      .-+|+|||||++|+-+|..|++.    |.+|+|+|+.+.+.                                       
T Consensus       180 ~~~vvIIGgG~~G~E~A~~l~~~----g~~Vtli~~~~~il---------------------------------------  216 (472)
T PRK05976        180 PKSLVIVGGGVIGLEWASMLADF----GVEVTVVEAADRIL---------------------------------------  216 (472)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc----CCeEEEEEecCccC---------------------------------------
Confidence            35899999999999999999996    89999999887430                                       


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                        +.                              .-..+...+.+.+++.| ++++.+++|++++.         ++   
T Consensus       217 --~~------------------------------~~~~~~~~l~~~l~~~g-I~i~~~~~v~~i~~---------~~---  251 (472)
T PRK05976        217 --PT------------------------------EDAELSKEVARLLKKLG-VRVVTGAKVLGLTL---------KK---  251 (472)
T ss_pred             --Cc------------------------------CCHHHHHHHHHHHHhcC-CEEEeCcEEEEEEE---------ec---
Confidence              00                              00123345566677777 99999999999963         00   


Q ss_pred             cccccccCCeeEEEcCCCc--EEEeeEEEEecCCCchh
Q 010200          215 ATTLFTKGHLAKLDLSDGT--SLYAKLVVGADGGKSRV  250 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~--~~~ad~vV~AdG~~S~v  250 (515)
                            .+....+.+.+|+  ++.+|.||.|.|.....
T Consensus       252 ------~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~  283 (472)
T PRK05976        252 ------DGGVLIVAEHNGEEKTLEADKVLVSVGRRPNT  283 (472)
T ss_pred             ------CCCEEEEEEeCCceEEEEeCEEEEeeCCccCC
Confidence                  1122233445563  69999999999987654

>PRK06370 mercuric reductase; Validated

Probab=97.88  E-value=0.00011  Score=76.86  Aligned_cols=100  Identities=14%  Similarity=0.245  Sum_probs=72.2

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      .-+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.               ...                     
T Consensus       171 ~~~vvVIGgG~~g~E~A~~l~~~----G~~Vtli~~~~~~l---------------~~~---------------------  210 (463)
T PRK06370        171 PEHLVIIGGGYIGLEFAQMFRRF----GSEVTVIERGPRLL---------------PRE---------------------  210 (463)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc----CCeEEEEEcCCCCC---------------ccc---------------------
Confidence            35899999999999999999996    89999999877430               000                     


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                                                         -.++...+.+.+++.| ++++++++|.+++.              
T Consensus       211 -----------------------------------~~~~~~~l~~~l~~~G-V~i~~~~~V~~i~~--------------  240 (463)
T PRK06370        211 -----------------------------------DEDVAAAVREILEREG-IDVRLNAECIRVER--------------  240 (463)
T ss_pred             -----------------------------------CHHHHHHHHHHHHhCC-CEEEeCCEEEEEEE--------------
Confidence                                               0123345566666777 99999999999975              


Q ss_pred             cccccccCCeeE--EEcCC-CcEEEeeEEEEecCCCchh
Q 010200          215 ATTLFTKGHLAK--LDLSD-GTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       215 ~~~~~~~~~~~~--v~~~~-g~~~~ad~vV~AdG~~S~v  250 (515)
                            .+..+.  +...+ +.++.+|.||.|.|.....
T Consensus       241 ------~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~  273 (463)
T PRK06370        241 ------DGDGIAVGLDCNGGAPEITGSHILVAVGRVPNT  273 (463)
T ss_pred             ------cCCEEEEEEEeCCCceEEEeCEEEECcCCCcCC
Confidence                  222233  33333 4579999999999976554

>PLN02852 ferredoxin-NADP+ reductase

Probab=97.87  E-value=2e-05  Score=81.81  Aligned_cols=40  Identities=30%  Similarity=0.374  Sum_probs=34.3

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ....+|+||||||||+.+|..|++..  +|++|+|||+.+.+
T Consensus        24 ~~~~~VaIVGaGPAGl~AA~~L~~~~--~g~~Vtv~E~~p~p   63 (491)
T PLN02852         24 SEPLHVCVVGSGPAGFYTADKLLKAH--DGARVDIIERLPTP   63 (491)
T ss_pred             CCCCcEEEECccHHHHHHHHHHHhhC--CCCeEEEEecCCCC
Confidence            34578999999999999999998521  39999999999977

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.87  E-value=9.1e-05  Score=82.46  Aligned_cols=102  Identities=18%  Similarity=0.258  Sum_probs=76.3

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      -.++|||||+.|+-+|..|++.    |.+|+|+|+.+.+.                   +.            .+.    
T Consensus       146 k~vvVIGgG~iGlE~A~~L~~~----G~~VtvVe~~~~ll-------------------~~------------~ld----  186 (847)
T PRK14989        146 KRGAVVGGGLLGLEAAGALKNL----GVETHVIEFAPMLM-------------------AE------------QLD----  186 (847)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc----CCeEEEEeccccch-------------------hh------------hcC----
Confidence            4699999999999999999996    89999999876430                   00            000    


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                                                         ......+.+.+++.| ++++.+++++++..           +   
T Consensus       187 -----------------------------------~~~~~~l~~~L~~~G-V~v~~~~~v~~I~~-----------~---  216 (847)
T PRK14989        187 -----------------------------------QMGGEQLRRKIESMG-VRVHTSKNTLEIVQ-----------E---  216 (847)
T ss_pred             -----------------------------------HHHHHHHHHHHHHCC-CEEEcCCeEEEEEe-----------c---
Confidence                                               122355667777778 99999999999964           0   


Q ss_pred             ccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200          216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                          .......+.+.+|+++.+|+||.|.|.....
T Consensus       217 ----~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~  247 (847)
T PRK14989        217 ----GVEARKTMRFADGSELEVDFIVFSTGIRPQD  247 (847)
T ss_pred             ----CCCceEEEEECCCCEEEcCEEEECCCcccCc
Confidence                0123456788899999999999999986553

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.83  E-value=0.00013  Score=76.34  Aligned_cols=100  Identities=18%  Similarity=0.267  Sum_probs=72.1

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      .-+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.          +     .+                     
T Consensus       174 ~~~vvIIGgG~ig~E~A~~l~~~----G~~Vtlie~~~~il----------~-----~~---------------------  213 (466)
T PRK06115        174 PKHLVVIGAGVIGLELGSVWRRL----GAQVTVVEYLDRIC----------P-----GT---------------------  213 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCeEEEEeCCCCCC----------C-----CC---------------------
Confidence            45799999999999999999996    89999999876430          0     00                     


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                                                         -.++...+.+.+++.| ++++.+++|++++.              
T Consensus       214 -----------------------------------d~~~~~~l~~~l~~~g-V~i~~~~~V~~i~~--------------  243 (466)
T PRK06115        214 -----------------------------------DTETAKTLQKALTKQG-MKFKLGSKVTGATA--------------  243 (466)
T ss_pred             -----------------------------------CHHHHHHHHHHHHhcC-CEEEECcEEEEEEE--------------
Confidence                                               0123345666667777 99999999999975              


Q ss_pred             cccccccCCeeEEEcC---C--CcEEEeeEEEEecCCCchh
Q 010200          215 ATTLFTKGHLAKLDLS---D--GTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~---~--g~~~~ad~vV~AdG~~S~v  250 (515)
                            .++.+.+.+.   +  ++++.+|.||.|.|.....
T Consensus       244 ------~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~  278 (466)
T PRK06115        244 ------GADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYT  278 (466)
T ss_pred             ------cCCeEEEEEEEcCCCceeEEEeCEEEEccCCcccc
Confidence                  2233444332   2  3479999999999987554

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=97.83  E-value=9.7e-05  Score=74.21  Aligned_cols=38  Identities=21%  Similarity=0.427  Sum_probs=33.1

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ..+|||||||.+|+.+|..|.+.+ . +.+|+++|++...
T Consensus         3 ~~~iVIlGgGfgGl~~a~~l~~~~-~-~~~itLVd~~~~h   40 (405)
T COG1252           3 KKRIVILGGGFGGLSAAKRLARKL-P-DVEITLVDRRDYH   40 (405)
T ss_pred             CceEEEECCcHHHHHHHHHhhhcC-C-CCcEEEEeCCCcc
Confidence            457999999999999999999973 2 6899999999854

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.83  E-value=3.7e-05  Score=83.58  Aligned_cols=37  Identities=32%  Similarity=0.511  Sum_probs=34.1

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ...+|+||||||+||++|..|++.    |++|+|||+.+.+
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~----G~~Vtv~e~~~~~  345 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARA----GVQVDVFDRHPEI  345 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHc----CCcEEEEeCCCCC
Confidence            467899999999999999999996    9999999999866

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=97.81  E-value=0.00055  Score=69.62  Aligned_cols=41  Identities=20%  Similarity=0.232  Sum_probs=35.2

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK   96 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~   96 (515)
                      .++=|||+|+|+|++|..|-|-+-.+|-+|+|||+.+.++.
T Consensus         3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GG   43 (500)
T PF06100_consen    3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGG   43 (500)
T ss_pred             ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCC
Confidence            46789999999999999998865457889999999987753

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.81  E-value=0.00019  Score=74.76  Aligned_cols=98  Identities=12%  Similarity=0.260  Sum_probs=73.9

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      -+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.                                        
T Consensus       159 ~~v~ViGgG~~g~E~A~~l~~~----g~~Vtli~~~~~~l----------------------------------------  194 (441)
T PRK08010        159 GHLGILGGGYIGVEFASMFANF----GSKVTILEAASLFL----------------------------------------  194 (441)
T ss_pred             CeEEEECCCHHHHHHHHHHHHC----CCeEEEEecCCCCC----------------------------------------
Confidence            4899999999999999999996    89999999876430                                        


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                       +.                             . -..+...+.+.+++.| ++++++++|++++.               
T Consensus       195 -~~-----------------------------~-~~~~~~~l~~~l~~~g-V~v~~~~~v~~i~~---------------  227 (441)
T PRK08010        195 -PR-----------------------------E-DRDIADNIATILRDQG-VDIILNAHVERISH---------------  227 (441)
T ss_pred             -CC-----------------------------c-CHHHHHHHHHHHHhCC-CEEEeCCEEEEEEE---------------
Confidence             00                             0 0123345666777777 99999999999975               


Q ss_pred             ccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200          216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                           ++..+.+..+++ ++.+|.||.|.|.....
T Consensus       228 -----~~~~v~v~~~~g-~i~~D~vl~a~G~~pn~  256 (441)
T PRK08010        228 -----HENQVQVHSEHA-QLAVDALLIASGRQPAT  256 (441)
T ss_pred             -----cCCEEEEEEcCC-eEEeCEEEEeecCCcCC
Confidence                 224466666555 48999999999987654

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=97.80  E-value=0.00019  Score=74.45  Aligned_cols=97  Identities=18%  Similarity=0.275  Sum_probs=72.6

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      -+|+|||||++|+-+|..|++.    |.+|+++++.+.+.                  .                 .   
T Consensus       138 ~~vvViGgG~~g~e~A~~l~~~----g~~Vtli~~~~~~~------------------~-----------------~---  175 (427)
T TIGR03385       138 ENVVIIGGGYIGIEMAEALRER----GKNVTLIHRSERIL------------------N-----------------K---  175 (427)
T ss_pred             CeEEEECCCHHHHHHHHHHHhC----CCcEEEEECCcccC------------------c-----------------c---
Confidence            5799999999999999999996    89999999876330                  0                 0   


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                       .                              . ...+...+.+.+++.| ++++++++|.++..               
T Consensus       176 -~------------------------------~-~~~~~~~~~~~l~~~g-V~v~~~~~v~~i~~---------------  207 (427)
T TIGR03385       176 -L------------------------------F-DEEMNQIVEEELKKHE-INLRLNEEVDSIEG---------------  207 (427)
T ss_pred             -c------------------------------c-CHHHHHHHHHHHHHcC-CEEEeCCEEEEEec---------------
Confidence             0                              0 0123455666677777 99999999999964               


Q ss_pred             ccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200          216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR  249 (515)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~  249 (515)
                           ++. + +.+.+|+++.+|.||.|.|....
T Consensus       208 -----~~~-~-v~~~~g~~i~~D~vi~a~G~~p~  234 (427)
T TIGR03385       208 -----EER-V-KVFTSGGVYQADMVILATGIKPN  234 (427)
T ss_pred             -----CCC-E-EEEcCCCEEEeCEEEECCCccCC
Confidence                 112 2 45567888999999999998754

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.78  E-value=5.6e-05  Score=79.39  Aligned_cols=37  Identities=30%  Similarity=0.371  Sum_probs=33.6

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ...+|+||||||+|+++|..|++.    |++|+|||+.+.+
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~----g~~V~v~e~~~~~  178 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRA----GHTVTVFEREDRC  178 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHc----CCeEEEEecCCCC
Confidence            347999999999999999999996    9999999998865

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=97.76  E-value=2.6e-05  Score=82.40  Aligned_cols=37  Identities=27%  Similarity=0.494  Sum_probs=34.2

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK   96 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~   96 (515)
                      .||||||||++||++|..|++.    |++|+|+|++..++.
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~----G~~v~vlE~~~~~GG   38 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKR----GYRVTLLEQHAQPGG   38 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHC----CCeEEEEecCCCCCC
Confidence            4899999999999999999996    999999999998853

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=97.75  E-value=9.1e-05  Score=72.96  Aligned_cols=77  Identities=25%  Similarity=0.390  Sum_probs=49.1

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCC--------CCCCCCCCcEEE-eCHhHHHHHHHc
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFI--------KKEDPPDPRVST-VTPATISFFKEI  124 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~--------~~~~~~~~~~~~-l~~~~~~~l~~l  124 (515)
                      ...+|+|||||++||++|+.|++.+  +...|+|||+.++.+.....        .-+++...+... ...+.+.++.++
T Consensus        10 ~~~~vaVvGGGiSGL~aay~L~r~~--p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dL   87 (491)
T KOG1276|consen   10 SGMTVAVVGGGISGLCAAYYLARLG--PDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDL   87 (491)
T ss_pred             ecceEEEECCchhHHHHHHHHHhcC--CCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHc
Confidence            3578999999999999999999973  23446779999877432111        111111111111 122467788899


Q ss_pred             CCchhhhh
Q 010200          125 GAWQYVQQ  132 (515)
Q Consensus       125 gl~~~~~~  132 (515)
                      |+.+++..
T Consensus        88 Gl~~e~~~   95 (491)
T KOG1276|consen   88 GLEDELQP   95 (491)
T ss_pred             Cccceeee
Confidence            99776655

>TIGR03452 mycothione_red mycothione reductase

Probab=97.74  E-value=0.00031  Score=73.21  Aligned_cols=98  Identities=17%  Similarity=0.292  Sum_probs=70.7

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      -+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.               ..+.                     
T Consensus       170 k~vvVIGgG~ig~E~A~~l~~~----G~~Vtli~~~~~ll---------------~~~d---------------------  209 (452)
T TIGR03452       170 ESLVIVGGGYIAAEFAHVFSAL----GTRVTIVNRSTKLL---------------RHLD---------------------  209 (452)
T ss_pred             CcEEEECCCHHHHHHHHHHHhC----CCcEEEEEccCccc---------------cccC---------------------
Confidence            5799999999999999999996    89999999876430               0000                     


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                                                         .++...+.+.. +.+ ++++.+++|++++.               
T Consensus       210 -----------------------------------~~~~~~l~~~~-~~g-I~i~~~~~V~~i~~---------------  237 (452)
T TIGR03452       210 -----------------------------------EDISDRFTEIA-KKK-WDIRLGRNVTAVEQ---------------  237 (452)
T ss_pred             -----------------------------------HHHHHHHHHHH-hcC-CEEEeCCEEEEEEE---------------
Confidence                                               01112222222 335 89999999999975               


Q ss_pred             ccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200          216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                           .+..+.+.+.+|+++.+|.||.|.|.....
T Consensus       238 -----~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~  267 (452)
T TIGR03452       238 -----DGDGVTLTLDDGSTVTADVLLVATGRVPNG  267 (452)
T ss_pred             -----cCCeEEEEEcCCCEEEcCEEEEeeccCcCC
Confidence                 223467777788889999999999976543

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.74  E-value=0.00033  Score=73.53  Aligned_cols=104  Identities=16%  Similarity=0.221  Sum_probs=74.4

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      .-+|+|||||+.|+-+|..++... ..|.+|+|+|+.+.+.               -.+                     
T Consensus       187 ~~~vvIIGgG~iG~E~A~~~~~l~-~~G~~Vtli~~~~~il---------------~~~---------------------  229 (486)
T TIGR01423       187 PRRVLTVGGGFISVEFAGIFNAYK-PRGGKVTLCYRNNMIL---------------RGF---------------------  229 (486)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHhc-cCCCeEEEEecCCccc---------------ccc---------------------
Confidence            357999999999999997664320 0288999999887430               000                     


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                                                         -.++.+.+.+.+++.| +++++++++++++.              
T Consensus       230 -----------------------------------d~~~~~~l~~~L~~~G-I~i~~~~~v~~i~~--------------  259 (486)
T TIGR01423       230 -----------------------------------DSTLRKELTKQLRANG-INIMTNENPAKVTL--------------  259 (486)
T ss_pred             -----------------------------------CHHHHHHHHHHHHHcC-CEEEcCCEEEEEEE--------------
Confidence                                               0234456667777777 99999999999975              


Q ss_pred             cccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200          215 ATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                           +.+....+.+.+|+++.+|.||.|.|.....
T Consensus       260 -----~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~  290 (486)
T TIGR01423       260 -----NADGSKHVTFESGKTLDVDVVMMAIGRVPRT  290 (486)
T ss_pred             -----cCCceEEEEEcCCCEEEcCEEEEeeCCCcCc
Confidence                 0112355666778889999999999987665

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.74  E-value=0.00028  Score=74.50  Aligned_cols=98  Identities=17%  Similarity=0.195  Sum_probs=73.7

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      -+|+|||||+.|+-+|..|++.    |.+|+|+++.....                .+                      
T Consensus       183 ~~vvIIGgG~iG~E~A~~l~~~----G~~Vtli~~~~~l~----------------~~----------------------  220 (499)
T PTZ00052        183 GKTLIVGASYIGLETAGFLNEL----GFDVTVAVRSIPLR----------------GF----------------------  220 (499)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc----CCcEEEEEcCcccc----------------cC----------------------
Confidence            3799999999999999999996    89999998632110                00                      


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                                                        -.++.+.+.+.+++.| ++++.++++.+++.               
T Consensus       221 ----------------------------------d~~~~~~l~~~l~~~G-V~i~~~~~v~~v~~---------------  250 (499)
T PTZ00052        221 ----------------------------------DRQCSEKVVEYMKEQG-TLFLEGVVPINIEK---------------  250 (499)
T ss_pred             ----------------------------------CHHHHHHHHHHHHHcC-CEEEcCCeEEEEEE---------------
Confidence                                              0113345666677777 99999999999865               


Q ss_pred             ccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200          216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                           ....+.+.+.+|+++.+|.||.|.|.....
T Consensus       251 -----~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~  280 (499)
T PTZ00052        251 -----MDDKIKVLFSDGTTELFDTVLYATGRKPDI  280 (499)
T ss_pred             -----cCCeEEEEECCCCEEEcCEEEEeeCCCCCc
Confidence                 223456777788889999999999987665

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=97.73  E-value=3.6e-05  Score=85.95  Aligned_cols=37  Identities=24%  Similarity=0.361  Sum_probs=34.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ...+|+|||||||||++|+.|++.    |++|+|||+.+.+
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~----G~~VTV~Ek~~~l  572 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARA----GHPVTVFEKKEKP  572 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHC----CCeEEEEeccccc
Confidence            457999999999999999999996    9999999998866

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK14694 putative mercuric reductase; Provisional

Probab=97.72  E-value=0.00034  Score=73.39  Aligned_cols=97  Identities=16%  Similarity=0.292  Sum_probs=71.8

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      -+|+|||||++|+-+|..|++.    |.+|+|+++...+.                                        
T Consensus       179 ~~vvViG~G~~G~E~A~~l~~~----g~~Vtlv~~~~~l~----------------------------------------  214 (468)
T PRK14694        179 ERLLVIGASVVALELAQAFARL----GSRVTVLARSRVLS----------------------------------------  214 (468)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc----CCeEEEEECCCCCC----------------------------------------
Confidence            5799999999999999999996    89999998642110                                        


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                       .                               ...++...+.+.+++.| ++++.++++.+++.               
T Consensus       215 -~-------------------------------~~~~~~~~l~~~l~~~G-I~v~~~~~v~~i~~---------------  246 (468)
T PRK14694        215 -Q-------------------------------EDPAVGEAIEAAFRREG-IEVLKQTQASEVDY---------------  246 (468)
T ss_pred             -C-------------------------------CCHHHHHHHHHHHHhCC-CEEEeCCEEEEEEE---------------
Confidence             0                               00123345666677777 99999999999965               


Q ss_pred             ccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200          216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                           ++..+.+.+.++ ++.+|.||.|.|.....
T Consensus       247 -----~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~  275 (468)
T PRK14694        247 -----NGREFILETNAG-TLRAEQLLVATGRTPNT  275 (468)
T ss_pred             -----cCCEEEEEECCC-EEEeCEEEEccCCCCCc
Confidence                 223455655444 69999999999987765

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=97.71  E-value=3.7e-05  Score=77.32  Aligned_cols=37  Identities=30%  Similarity=0.616  Sum_probs=33.5

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK   96 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~   96 (515)
                      +||+|||||++|+++|..|++.    |.+|+|+|++...+.
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~----G~~V~viEk~~~iGG   38 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQL----NKRVLVVEKRNHIGG   38 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhC----CCeEEEEecCCCCCC
Confidence            6999999999999999999985    899999999876643

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=97.70  E-value=0.0003  Score=72.80  Aligned_cols=51  Identities=16%  Similarity=0.097  Sum_probs=40.1

Q ss_pred             HHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCc
Q 010200          173 LHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKS  248 (515)
Q Consensus       173 l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S  248 (515)
                      +.+.+.+.+++.| ++++.+++|+++..                      +  .+.+++|+++.+|+||.|.|...
T Consensus       230 ~~~~~~~~L~~~g-V~v~~~~~v~~v~~----------------------~--~v~~~~g~~i~~d~vi~~~G~~~  280 (424)
T PTZ00318        230 LRKYGQRRLRRLG-VDIRTKTAVKEVLD----------------------K--EVVLKDGEVIPTGLVVWSTGVGP  280 (424)
T ss_pred             HHHHHHHHHHHCC-CEEEeCCeEEEEeC----------------------C--EEEECCCCEEEccEEEEccCCCC
Confidence            4455667777777 99999999999853                      2  35567888999999999999644

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=97.68  E-value=0.00034  Score=71.94  Aligned_cols=100  Identities=22%  Similarity=0.314  Sum_probs=77.6

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      ..+|+|||||++|+.+|..|++.    |++|+++|+.+.+...               +.                    
T Consensus       136 ~~~v~vvG~G~~gle~A~~~~~~----G~~v~l~e~~~~~~~~---------------~~--------------------  176 (415)
T COG0446         136 PKDVVVVGAGPIGLEAAEAAAKR----GKKVTLIEAADRLGGQ---------------LL--------------------  176 (415)
T ss_pred             cCeEEEECCcHHHHHHHHHHHHc----CCeEEEEEcccccchh---------------hh--------------------
Confidence            46899999999999999999996    9999999999866100               00                    


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                                                        . ..+...+.+.+++.| ++++.+.++.+++.              
T Consensus       177 ----------------------------------~-~~~~~~~~~~l~~~g-i~~~~~~~~~~i~~--------------  206 (415)
T COG0446         177 ----------------------------------D-PEVAEELAELLEKYG-VELLLGTKVVGVEG--------------  206 (415)
T ss_pred             ----------------------------------h-HHHHHHHHHHHHHCC-cEEEeCCceEEEEc--------------
Confidence                                              0 234466777788888 99999999999975              


Q ss_pred             cccccccCCeeE---EEcCCCcEEEeeEEEEecCCCch
Q 010200          215 ATTLFTKGHLAK---LDLSDGTSLYAKLVVGADGGKSR  249 (515)
Q Consensus       215 ~~~~~~~~~~~~---v~~~~g~~~~ad~vV~AdG~~S~  249 (515)
                            ......   +...++..+.+|+++.+.|....
T Consensus       207 ------~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~  238 (415)
T COG0446         207 ------KGNTLVVERVVGIDGEEIKADLVIIGPGERPN  238 (415)
T ss_pred             ------ccCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence                  222222   56678888999999999998764

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.68  E-value=4.3e-05  Score=72.61  Aligned_cols=36  Identities=28%  Similarity=0.602  Sum_probs=33.0

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ++||+|||||+||+++|+.|+++    |.++.|+-++...
T Consensus         2 ~fDv~IIGGGLAGltc~l~l~~~----Gk~c~iv~~gQsA   37 (421)
T COG3075           2 NFDVAIIGGGLAGLTCGLALQQA----GKRCAIVNRGQSA   37 (421)
T ss_pred             cccEEEEcCcHHHHHHHHHHHhc----CCcEEEEeCChhh
Confidence            68999999999999999999997    9999999887654

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=97.68  E-value=0.00018  Score=72.33  Aligned_cols=58  Identities=19%  Similarity=0.158  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCc-EEEeeEEEEecCCC-c
Q 010200          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT-SLYAKLVVGADGGK-S  248 (515)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~ad~vV~AdG~~-S  248 (515)
                      .++..+..+.++++| |+|+.++.|++++.                      +.+++  .+|. ++.++.+|-|.|.. |
T Consensus       209 ~~l~~~a~~~L~~~G-V~v~l~~~Vt~v~~----------------------~~v~~--~~g~~~I~~~tvvWaaGv~a~  263 (405)
T COG1252         209 PKLSKYAERALEKLG-VEVLLGTPVTEVTP----------------------DGVTL--KDGEEEIPADTVVWAAGVRAS  263 (405)
T ss_pred             HHHHHHHHHHHHHCC-CEEEcCCceEEECC----------------------CcEEE--ccCCeeEecCEEEEcCCCcCC
Confidence            345566777788888 99999999999964                      44554  4555 59999999999975 3


Q ss_pred             hhhhh
Q 010200          249 RVREL  253 (515)
Q Consensus       249 ~vr~~  253 (515)
                      ++-+.
T Consensus       264 ~~~~~  268 (405)
T COG1252         264 PLLKD  268 (405)
T ss_pred             hhhhh
Confidence            44444

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=97.68  E-value=0.00036  Score=72.76  Aligned_cols=98  Identities=14%  Similarity=0.216  Sum_probs=71.5

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      .+|+|||||++|+-+|..|++.    |.+|+++++.+.+.                   +.                   
T Consensus       150 ~~vvVvGgG~~g~e~A~~l~~~----g~~Vtli~~~~~~l-------------------~~-------------------  187 (444)
T PRK09564        150 KNIVIIGAGFIGLEAVEAAKHL----GKNVRIIQLEDRIL-------------------PD-------------------  187 (444)
T ss_pred             CEEEEECCCHHHHHHHHHHHhc----CCcEEEEeCCcccC-------------------ch-------------------
Confidence            5799999999999999999996    89999998766330                   00                   


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                                       .              . ...+.+.+.+.+++.| ++++++++|+++..               
T Consensus       188 -----------------~--------------~-~~~~~~~l~~~l~~~g-I~v~~~~~v~~i~~---------------  219 (444)
T PRK09564        188 -----------------S--------------F-DKEITDVMEEELRENG-VELHLNEFVKSLIG---------------  219 (444)
T ss_pred             -----------------h--------------c-CHHHHHHHHHHHHHCC-CEEEcCCEEEEEec---------------
Confidence                             0              0 0234456777777777 99999999999953               


Q ss_pred             ccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200          216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR  249 (515)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~  249 (515)
                           ++....+..+ +.++.+|.||.|.|....
T Consensus       220 -----~~~~~~v~~~-~~~i~~d~vi~a~G~~p~  247 (444)
T PRK09564        220 -----EDKVEGVVTD-KGEYEADVVIVATGVKPN  247 (444)
T ss_pred             -----CCcEEEEEeC-CCEEEcCEEEECcCCCcC
Confidence                 2222334444 447999999999998653

>PRK14727 putative mercuric reductase; Provisional

Probab=97.65  E-value=0.00048  Score=72.45  Aligned_cols=97  Identities=16%  Similarity=0.247  Sum_probs=72.7

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      -+|+|||||+.|+-+|..|++.    |.+|+|+++.....                .+.                     
T Consensus       189 k~vvVIGgG~iG~E~A~~l~~~----G~~Vtlv~~~~~l~----------------~~d---------------------  227 (479)
T PRK14727        189 ASLTVIGSSVVAAEIAQAYARL----GSRVTILARSTLLF----------------RED---------------------  227 (479)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc----CCEEEEEEcCCCCC----------------cch---------------------
Confidence            5799999999999999999986    89999998743110                000                     


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                                                         ..+...+.+.+++.| ++++++++|++++.               
T Consensus       228 -----------------------------------~~~~~~l~~~L~~~G-V~i~~~~~V~~i~~---------------  256 (479)
T PRK14727        228 -----------------------------------PLLGETLTACFEKEG-IEVLNNTQASLVEH---------------  256 (479)
T ss_pred             -----------------------------------HHHHHHHHHHHHhCC-CEEEcCcEEEEEEE---------------
Confidence                                               123345666677777 99999999999975               


Q ss_pred             ccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200          216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                           .+..+.+...++ ++.+|.||.|.|.....
T Consensus       257 -----~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~  285 (479)
T PRK14727        257 -----DDNGFVLTTGHG-ELRAEKLLISTGRHANT  285 (479)
T ss_pred             -----eCCEEEEEEcCC-eEEeCEEEEccCCCCCc
Confidence                 224466666555 58999999999998765

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.64  E-value=0.00027  Score=69.48  Aligned_cols=157  Identities=11%  Similarity=0.083  Sum_probs=94.6

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHH--HHHHHcCCchh
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATI--SFFKEIGAWQY  129 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~l~~lgl~~~  129 (515)
                      ++..+|+|.||-||.-|++|+.|..+   .++++..+||.+...-..           |..+....+  .++++|-    
T Consensus         2 ~~~~~DliGIG~GPfNL~LA~ll~e~---~~~~~lFLerkp~F~WHp-----------GmllegstlQv~FlkDLV----   63 (436)
T COG3486           2 MAEVLDLIGIGIGPFNLSLAALLEEH---SGLKSLFLERKPDFSWHP-----------GMLLEGSTLQVPFLKDLV----   63 (436)
T ss_pred             CCcceeeEEEccCchHHHHHHHhccc---cCcceEEEecCCCCCcCC-----------CcccCCccccccchhhhc----
Confidence            45679999999999999999999998   368999999999874221           222222211  2333331    


Q ss_pred             hhhhhccccceEEEEe---CCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCC
Q 010200          130 VQQHRHAYFDKMQVWD---YTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSS  206 (515)
Q Consensus       130 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~  206 (515)
                        .... +-....+.+   ..+. ...|-      ....+.+.|.++.+++.=.+...+  .+++|.+|++|..      
T Consensus        64 --Tl~~-PTs~ySFLNYL~~h~R-Ly~Fl------~~e~f~i~R~Ey~dY~~Waa~~l~--~~rfg~~V~~i~~------  125 (436)
T COG3486          64 --TLVD-PTSPYSFLNYLHEHGR-LYEFL------NYETFHIPRREYNDYCQWAASQLP--SLRFGEEVTDISS------  125 (436)
T ss_pred             --cccC-CCCchHHHHHHHHcch-Hhhhh------hhhcccccHHHHHHHHHHHHhhCC--ccccCCeeccccc------
Confidence              0000 111111100   0000 00000      111246788888888887777664  6899999998732      


Q ss_pred             cccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhc
Q 010200          207 ISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELA  254 (515)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l  254 (515)
                          .+.|      ......+...++..+.|+-||...|..-.+-.++
T Consensus       126 ----~~~d------~~~~~~~~t~~~~~y~ar~lVlg~G~~P~IP~~f  163 (436)
T COG3486         126 ----LDGD------AVVRLFVVTANGTVYRARNLVLGVGTQPYIPPCF  163 (436)
T ss_pred             ----cCCc------ceeEEEEEcCCCcEEEeeeEEEccCCCcCCChHH
Confidence                1111      1122236667777899999999999877765554

>PTZ00058 glutathione reductase; Provisional

Probab=97.63  E-value=0.00043  Score=73.61  Aligned_cols=101  Identities=15%  Similarity=0.182  Sum_probs=72.8

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      .-+|+|||||..|+-+|..|++.    |.+|+|+|+.+.+.               -.                      
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~----G~~Vtli~~~~~il---------------~~----------------------  275 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRL----GAESYIFARGNRLL---------------RK----------------------  275 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHc----CCcEEEEEeccccc---------------cc----------------------
Confidence            45799999999999999999996    89999999876430               00                      


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                                                       ++ .++.+.+.+.+++.| ++++++++|.+++.              
T Consensus       276 ---------------------------------~d-~~i~~~l~~~L~~~G-V~i~~~~~V~~I~~--------------  306 (561)
T PTZ00058        276 ---------------------------------FD-ETIINELENDMKKNN-INIITHANVEEIEK--------------  306 (561)
T ss_pred             ---------------------------------CC-HHHHHHHHHHHHHCC-CEEEeCCEEEEEEe--------------
Confidence                                             00 123344566667777 99999999999965              


Q ss_pred             cccccccCCeeEEEcCCC-cEEEeeEEEEecCCCchh
Q 010200          215 ATTLFTKGHLAKLDLSDG-TSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g-~~~~ad~vV~AdG~~S~v  250 (515)
                           +....+.+.+.++ +++.+|.||.|.|....+
T Consensus       307 -----~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~  338 (561)
T PTZ00058        307 -----VKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNT  338 (561)
T ss_pred             -----cCCCcEEEEECCCCEEEECCEEEECcCCCCCc
Confidence                 0112355554444 479999999999976543

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=97.63  E-value=0.00014  Score=74.14  Aligned_cols=62  Identities=21%  Similarity=0.202  Sum_probs=53.4

Q ss_pred             EEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecC
Q 010200          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADG  245 (515)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG  245 (515)
                      ..++...+...|.+.+.+ | ++++++++|++++.                    .+..+.+.+.+|.++.||.||.|+|
T Consensus       130 g~idp~~~~~~l~~~~~~-G-~~i~~~~~V~~i~~--------------------~~~~~~v~t~~g~~~~a~~vV~a~G  187 (381)
T TIGR03197       130 GWLSPPQLCRALLAHAGI-R-LTLHFNTEITSLER--------------------DGEGWQLLDANGEVIAASVVVLANG  187 (381)
T ss_pred             cccChHHHHHHHHhccCC-C-cEEEeCCEEEEEEE--------------------cCCeEEEEeCCCCEEEcCEEEEcCC
Confidence            356789999999999988 7 99999999999976                    3345788888888799999999999


Q ss_pred             CCch
Q 010200          246 GKSR  249 (515)
Q Consensus       246 ~~S~  249 (515)
                      .++.
T Consensus       188 ~~~~  191 (381)
T TIGR03197       188 AQAG  191 (381)
T ss_pred             cccc
Confidence            9985

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=97.62  E-value=5.5e-05  Score=74.27  Aligned_cols=37  Identities=27%  Similarity=0.510  Sum_probs=31.1

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      ||+||||+|++|+.+|..|++.   .+.+|+|+|+++...
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~---~~~~VlvlEaG~~~~   37 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEA---GNKKVLVLEAGPRYP   37 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTS---TTS-EEEEESSBSCT
T ss_pred             CCEEEECcCHHHHHHHHHHhhC---CCCcEEEEEccccCc
Confidence            7999999999999999999997   247999999998754

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PTZ00188 adrenodoxin reductase; Provisional

Probab=97.62  E-value=6.9e-05  Score=76.89  Aligned_cols=38  Identities=18%  Similarity=0.366  Sum_probs=32.9

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ...+|+||||||||+.+|..|++.   .|++|+||||.+.+
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~---~g~~VtlfEk~p~p   75 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKH---ERVKVDIFEKLPNP   75 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHh---cCCeEEEEecCCCC
Confidence            456899999999999999976543   39999999999988

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.61  E-value=0.00047  Score=72.28  Aligned_cols=35  Identities=17%  Similarity=0.446  Sum_probs=31.6

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      -+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+
T Consensus       175 ~~vvIiGgG~iG~E~A~~l~~~----G~~Vtlv~~~~~i  209 (471)
T PRK06467        175 KRLLVMGGGIIGLEMGTVYHRL----GSEVDVVEMFDQV  209 (471)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc----CCCEEEEecCCCC
Confidence            5799999999999999999996    8999999988743

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.61  E-value=0.0005  Score=72.22  Aligned_cols=98  Identities=17%  Similarity=0.081  Sum_probs=70.9

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      -+|+|||||+.|+-+|..|++.    |.+|+|+++...+.                .+                      
T Consensus       181 ~~vvIIGgG~iG~E~A~~l~~~----G~~Vtli~~~~~l~----------------~~----------------------  218 (484)
T TIGR01438       181 GKTLVVGASYVALECAGFLAGI----GLDVTVMVRSILLR----------------GF----------------------  218 (484)
T ss_pred             CCEEEECCCHHHHHHHHHHHHh----CCcEEEEEeccccc----------------cc----------------------
Confidence            4799999999999999999996    89999998632110                00                      


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                                                        -.++.+.+.+.+++.| +++++++.+++++.               
T Consensus       219 ----------------------------------d~~~~~~l~~~L~~~g-V~i~~~~~v~~v~~---------------  248 (484)
T TIGR01438       219 ----------------------------------DQDCANKVGEHMEEHG-VKFKRQFVPIKVEQ---------------  248 (484)
T ss_pred             ----------------------------------CHHHHHHHHHHHHHcC-CEEEeCceEEEEEE---------------
Confidence                                              0123345666677777 99999999998865               


Q ss_pred             ccccccCCeeEEEcCCC---cEEEeeEEEEecCCCchh
Q 010200          216 TTLFTKGHLAKLDLSDG---TSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       216 ~~~~~~~~~~~v~~~~g---~~~~ad~vV~AdG~~S~v  250 (515)
                           .+..+.+++.++   +++.+|.||.|.|.....
T Consensus       249 -----~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~  281 (484)
T TIGR01438       249 -----IEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACT  281 (484)
T ss_pred             -----cCCeEEEEEecCCcceEEEeCEEEEEecCCcCC
Confidence                 223455665554   379999999999976543

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=97.60  E-value=6.4e-05  Score=75.02  Aligned_cols=37  Identities=35%  Similarity=0.714  Sum_probs=34.5

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      .-+|+|||||+||+++|+.|++.    |++|.++||.+..+
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~----G~~v~LVEKepsiG  160 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADM----GFKVYLVEKEPSIG  160 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHc----CCeEEEEecCCccc
Confidence            45799999999999999999997    99999999999885

>PRK13748 putative mercuric reductase; Provisional

Probab=97.56  E-value=0.00072  Score=72.71  Aligned_cols=97  Identities=16%  Similarity=0.205  Sum_probs=71.6

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      -+|+|||||+.|+-+|..|++.    |.+|+|+++...+.                ...                     
T Consensus       271 ~~vvViGgG~ig~E~A~~l~~~----g~~Vtli~~~~~l~----------------~~d---------------------  309 (561)
T PRK13748        271 ERLAVIGSSVVALELAQAFARL----GSKVTILARSTLFF----------------RED---------------------  309 (561)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc----CCEEEEEecCcccc----------------ccC---------------------
Confidence            5799999999999999999996    89999999743210                000                     


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                                                         .++...+.+.+++.| ++++.++++++++.               
T Consensus       310 -----------------------------------~~~~~~l~~~l~~~g-I~i~~~~~v~~i~~---------------  338 (561)
T PRK13748        310 -----------------------------------PAIGEAVTAAFRAEG-IEVLEHTQASQVAH---------------  338 (561)
T ss_pred             -----------------------------------HHHHHHHHHHHHHCC-CEEEcCCEEEEEEe---------------
Confidence                                               112244556666677 99999999999965               


Q ss_pred             ccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200          216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                           .+..+.+.+.++ ++.+|.||.|.|.....
T Consensus       339 -----~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~  367 (561)
T PRK13748        339 -----VDGEFVLTTGHG-ELRADKLLVATGRAPNT  367 (561)
T ss_pred             -----cCCEEEEEecCC-eEEeCEEEEccCCCcCC
Confidence                 223456666555 59999999999986654

>PLN02546 glutathione reductase

Probab=97.54  E-value=0.00079  Score=71.65  Aligned_cols=101  Identities=15%  Similarity=0.135  Sum_probs=73.3

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      .-+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.               -.+                     
T Consensus       252 ~k~V~VIGgG~iGvE~A~~L~~~----g~~Vtlv~~~~~il---------------~~~---------------------  291 (558)
T PLN02546        252 PEKIAIVGGGYIALEFAGIFNGL----KSDVHVFIRQKKVL---------------RGF---------------------  291 (558)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhc----CCeEEEEEeccccc---------------ccc---------------------
Confidence            35899999999999999999986    89999999876430               000                     


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                                                         -..+...+.+.+++.| ++++.++++++++.              
T Consensus       292 -----------------------------------d~~~~~~l~~~L~~~G-V~i~~~~~v~~i~~--------------  321 (558)
T PLN02546        292 -----------------------------------DEEVRDFVAEQMSLRG-IEFHTEESPQAIIK--------------  321 (558)
T ss_pred             -----------------------------------CHHHHHHHHHHHHHCC-cEEEeCCEEEEEEE--------------
Confidence                                               0123355666677777 99999999999964              


Q ss_pred             cccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200          215 ATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                           +.+..+.+...+++...+|.||.|.|.....
T Consensus       322 -----~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt  352 (558)
T PLN02546        322 -----SADGSLSLKTNKGTVEGFSHVMFATGRKPNT  352 (558)
T ss_pred             -----cCCCEEEEEECCeEEEecCEEEEeeccccCC
Confidence                 0123355655555545589999999987765

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.48  E-value=0.00013  Score=79.64  Aligned_cols=37  Identities=32%  Similarity=0.531  Sum_probs=34.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ...+|+|||||||||++|..|++.    |++|+|||+.+.+
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~----G~~V~V~E~~~~~  362 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARN----GVAVTVYDRHPEI  362 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC----CCeEEEEecCCCC
Confidence            457999999999999999999996    9999999998766

>TIGR02462 pyranose_ox pyranose oxidase

Probab=97.48  E-value=0.00017  Score=75.74  Aligned_cols=36  Identities=31%  Similarity=0.449  Sum_probs=33.9

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      |||+|||+||+|+++|..|++.    |++|+|+|++...+
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~----g~~v~~~e~~~~~~   36 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDA----GLKVAMVEIGAADS   36 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHC----CCeEEEEeccCccC
Confidence            6999999999999999999996    89999999999875

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PRK02106 choline dehydrogenase; Validated

Probab=97.47  E-value=0.00012  Score=78.52  Aligned_cols=39  Identities=26%  Similarity=0.474  Sum_probs=34.5

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      +...+|+||||||++|+.+|..|++.   +|++|+|||+++.
T Consensus         2 ~~~~~D~iIVG~G~aG~vvA~rLae~---~g~~VlvlEaG~~   40 (560)
T PRK02106          2 TTMEYDYIIIGAGSAGCVLANRLSED---PDVSVLLLEAGGP   40 (560)
T ss_pred             CCCcCcEEEECCcHHHHHHHHHHHhC---CCCeEEEecCCCc
Confidence            34569999999999999999999994   3999999999963

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.46  E-value=0.00015  Score=76.04  Aligned_cols=38  Identities=32%  Similarity=0.397  Sum_probs=34.4

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ....+|+||||||+|+++|..|++.    |++|+|||+.+.+
T Consensus       141 ~~~~~VvIIGaGpAGl~aA~~l~~~----G~~V~vie~~~~~  178 (471)
T PRK12810        141 RTGKKVAVVGSGPAGLAAADQLARA----GHKVTVFERADRI  178 (471)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhC----CCcEEEEecCCCC
Confidence            3457999999999999999999996    9999999998866

>PLN02529 lysine-specific histone demethylase 1

Probab=97.45  E-value=0.00015  Score=78.85  Aligned_cols=41  Identities=27%  Similarity=0.461  Sum_probs=36.4

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS   97 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~   97 (515)
                      ....+|+|||||++||++|..|+++    |++|+|+|++..++.+
T Consensus       158 ~~~~~v~viGaG~aGl~aA~~l~~~----g~~v~v~E~~~~~GG~  198 (738)
T PLN02529        158 GTEGSVIIVGAGLAGLAAARQLLSF----GFKVVVLEGRNRPGGR  198 (738)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHc----CCcEEEEecCccCcCc
Confidence            3567999999999999999999996    9999999999877543

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=97.45  E-value=0.0004  Score=69.70  Aligned_cols=59  Identities=20%  Similarity=0.175  Sum_probs=47.7

Q ss_pred             EechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCC-cEEEeeEEEEecC
Q 010200          167 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG-TSLYAKLVVGADG  245 (515)
Q Consensus       167 ~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~ad~vV~AdG  245 (515)
                      .-.-..+.++|.+++++.| |+|+++++|++++.                      ..+.+.+.++ .++.||.||.|+|
T Consensus        82 S~~A~sVv~~L~~~l~~~g-V~i~~~~~V~~i~~----------------------~~~~v~~~~~~~~~~a~~vIlAtG  138 (376)
T TIGR03862        82 EMKAAPLLRAWLKRLAEQG-VQFHTRHRWIGWQG----------------------GTLRFETPDGQSTIEADAVVLALG  138 (376)
T ss_pred             CCCHHHHHHHHHHHHHHCC-CEEEeCCEEEEEeC----------------------CcEEEEECCCceEEecCEEEEcCC
Confidence            3456789999999999998 99999999999932                      2355665433 4699999999999


Q ss_pred             CCc
Q 010200          246 GKS  248 (515)
Q Consensus       246 ~~S  248 (515)
                      ..|
T Consensus       139 G~s  141 (376)
T TIGR03862       139 GAS  141 (376)
T ss_pred             Ccc
Confidence            976

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.44  E-value=0.0013  Score=68.97  Aligned_cols=36  Identities=25%  Similarity=0.618  Sum_probs=32.1

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      .-+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+
T Consensus       169 ~k~v~VIGgG~~g~E~A~~l~~~----g~~Vtli~~~~~~  204 (460)
T PRK06292        169 PKSLAVIGGGVIGLELGQALSRL----GVKVTVFERGDRI  204 (460)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCcEEEEecCCCc
Confidence            35799999999999999999996    8999999987744

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=97.44  E-value=0.0026  Score=67.56  Aligned_cols=70  Identities=19%  Similarity=0.232  Sum_probs=52.5

Q ss_pred             EEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCee-EEEc---CCC--cEEEeeE
Q 010200          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLA-KLDL---SDG--TSLYAKL  239 (515)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~---~~g--~~~~ad~  239 (515)
                      ..++...+...|.+.+.+.| ++|+.+++|++++.                    .++.+ .|++   .+|  .++.|+.
T Consensus       123 g~vdp~~l~~al~~~A~~~G-a~i~~~t~V~~i~~--------------------~~~~v~gv~v~~~~~g~~~~i~a~~  181 (516)
T TIGR03377       123 GTVDPFRLVAANVLDAQEHG-ARIFTYTKVTGLIR--------------------EGGRVTGVKVEDHKTGEEERIEAQV  181 (516)
T ss_pred             cEECHHHHHHHHHHHHHHcC-CEEEcCcEEEEEEE--------------------ECCEEEEEEEEEcCCCcEEEEEcCE
Confidence            35788999999999999998 99999999999976                    22222 2333   234  2799999


Q ss_pred             EEEecCCCch-hhhhcCC
Q 010200          240 VVGADGGKSR-VRELAGF  256 (515)
Q Consensus       240 vV~AdG~~S~-vr~~l~~  256 (515)
                      ||.|+|.|+. +.+.++.
T Consensus       182 VVnAaG~wa~~l~~~~g~  199 (516)
T TIGR03377       182 VINAAGIWAGRIAEYAGL  199 (516)
T ss_pred             EEECCCcchHHHHHhcCC
Confidence            9999999986 3444454

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=97.38  E-value=0.00017  Score=73.82  Aligned_cols=34  Identities=32%  Similarity=0.610  Sum_probs=31.8

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ++||+|||||++|+++|+.|++.    |.+|+|+|+..
T Consensus         2 ~~DviIIG~G~aGl~aA~~la~~----g~~v~vi~~~~   35 (422)
T PRK05329          2 KFDVLVIGGGLAGLTAALAAAEA----GKRVALVAKGQ   35 (422)
T ss_pred             CCCEEEECccHHHHHHHHHHHHC----CCcEEEEECCC
Confidence            58999999999999999999996    99999999875

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.31  E-value=0.0022  Score=69.43  Aligned_cols=35  Identities=20%  Similarity=0.405  Sum_probs=31.6

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      -+|+|||||..|+-+|..|++.    |.+|+|+|+.+.+
T Consensus       313 k~VvIVGgG~iGvE~A~~l~~~----G~eVTLIe~~~~l  347 (659)
T PTZ00153        313 NYMGIVGMGIIGLEFMDIYTAL----GSEVVSFEYSPQL  347 (659)
T ss_pred             CceEEECCCHHHHHHHHHHHhC----CCeEEEEeccCcc
Confidence            4799999999999999999996    8999999998744

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=97.30  E-value=0.00029  Score=67.03  Aligned_cols=36  Identities=28%  Similarity=0.531  Sum_probs=33.9

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      +|++|||+|++|+.+|..|+++    |.+|.|+||++-.+
T Consensus         2 fd~lIVGaGlsG~V~A~~a~~~----gk~VLIvekR~HIG   37 (374)
T COG0562           2 FDYLIVGAGLSGAVIAEVAAQL----GKRVLIVEKRNHIG   37 (374)
T ss_pred             CcEEEECCchhHHHHHHHHHHc----CCEEEEEeccccCC
Confidence            7999999999999999999997    99999999999875

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.25  E-value=0.00036  Score=76.06  Aligned_cols=37  Identities=30%  Similarity=0.408  Sum_probs=33.9

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ...+|+||||||+||++|+.|++.    |++|+|||+.+.+
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~----G~~Vtv~e~~~~~  228 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRK----GHDVTIFDANEQA  228 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC----CCcEEEEecCCCC
Confidence            457999999999999999999996    9999999998866

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=97.22  E-value=0.0019  Score=64.22  Aligned_cols=64  Identities=17%  Similarity=0.245  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                      ..+..++.+.+++.| .+|++...|.+|..                   +.+..+.|..+||+++.++.||-=.+.|-..
T Consensus       264 Gavs~aia~~~~~~G-aeI~tka~Vq~Ill-------------------d~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf  323 (561)
T KOG4254|consen  264 GAVSFAIAEGAKRAG-AEIFTKATVQSILL-------------------DSGKAVGVRLADGTEVRSKIVVSNATPWDTF  323 (561)
T ss_pred             hHHHHHHHHHHHhcc-ceeeehhhhhheec-------------------cCCeEEEEEecCCcEEEeeeeecCCchHHHH
Confidence            456688899999998 89999999999987                   2346677889999999999999888877766


Q ss_pred             hhhc
Q 010200          251 RELA  254 (515)
Q Consensus       251 r~~l  254 (515)
                      -+.+
T Consensus       324 ~kLl  327 (561)
T KOG4254|consen  324 EKLL  327 (561)
T ss_pred             HHhC
Confidence            5555

>PRK10262 thioredoxin reductase; Provisional

Probab=97.21  E-value=0.0028  Score=62.92  Aligned_cols=34  Identities=29%  Similarity=0.420  Sum_probs=30.7

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ..+|+|||+|..|+-+|..|++.    |.+|+++++.+
T Consensus       146 g~~vvVvGgG~~g~e~A~~l~~~----~~~Vtlv~~~~  179 (321)
T PRK10262        146 NQKVAVIGGGNTAVEEALYLSNI----ASEVHLIHRRD  179 (321)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhh----CCEEEEEEECC
Confidence            35899999999999999999996    89999999875

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.14  E-value=0.0031  Score=66.91  Aligned_cols=34  Identities=35%  Similarity=0.529  Sum_probs=30.4

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ..+|+|||||+.|+-+|..|++.    |.+|+|+|+.+
T Consensus       352 ~k~VvViGgG~~g~E~A~~L~~~----g~~Vtli~~~~  385 (515)
T TIGR03140       352 GKDVAVIGGGNSGIEAAIDLAGI----VRHVTVLEFAD  385 (515)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhc----CcEEEEEEeCC
Confidence            35899999999999999999986    88999998765

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=97.13  E-value=0.0014  Score=65.42  Aligned_cols=144  Identities=17%  Similarity=0.143  Sum_probs=73.9

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhh
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQ  131 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~  131 (515)
                      ......|+|||||.++.-++..|.+.+  +..+|+++=|++......      ........+.|..++.+..+..  +..
T Consensus       187 ~~~~~~V~VVGgGQSAAEi~~~L~~~~--~~~~V~~i~R~~~~~~~d------~s~f~ne~f~P~~v~~f~~l~~--~~R  256 (341)
T PF13434_consen  187 SLAGKRVAVVGGGQSAAEIFLDLLRRG--PEAKVTWISRSPGFFPMD------DSPFVNEIFSPEYVDYFYSLPD--EER  256 (341)
T ss_dssp             ----EEEEEE-SSHHHHHHHHHHHHH---TTEEEEEEESSSS-EB----------CCHHGGGSHHHHHHHHTS-H--HHH
T ss_pred             ccCCCeEEEECCcHhHHHHHHHHHhCC--CCcEEEEEECCCccCCCc------cccchhhhcCchhhhhhhcCCH--HHH
Confidence            445689999999999999999998862  236899998887652110      1111112455666665554432  111


Q ss_pred             hhhccccceEEEEeCCCccceeeecccCCCCcceEEechHHH---HHHH-HHHHhcCCCceEEcCCeeEEEEeCCCCCCc
Q 010200          132 QHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVL---HSSL-LSCMQNTEFQKTIYPSRLTSMALLPSSSSI  207 (515)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l---~~~L-~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~  207 (515)
                      ........                  ..  ..  -.|+...+   .+.| .+.+...+.++++.+++|++++.       
T Consensus       257 ~~~l~~~~------------------~~--ny--~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~-------  307 (341)
T PF13434_consen  257 RELLREQR------------------HT--NY--GGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQ-------  307 (341)
T ss_dssp             HHHHHHTG------------------GG--TS--SEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEE-------
T ss_pred             HHHHHHhH------------------hh--cC--CCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEE-------
Confidence            11110000                  00  00  12332222   2222 23344444589999999999987       


Q ss_pred             ccCCCCCcccccccCCeeEEEcCC---C--cEEEeeEEEEecCC
Q 010200          208 SVDSTPSATTLFTKGHLAKLDLSD---G--TSLYAKLVVGADGG  246 (515)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~v~~~~---g--~~~~ad~vV~AdG~  246 (515)
                                  +..+.+.+.+.+   +  .++.+|+||.|||.
T Consensus       308 ------------~~~~~~~l~~~~~~~~~~~~~~~D~VilATGy  339 (341)
T PF13434_consen  308 ------------DGDGGVRLTLRHRQTGEEETLEVDAVILATGY  339 (341)
T ss_dssp             ------------ES-SSEEEEEEETTT--EEEEEESEEEE---E
T ss_pred             ------------CCCCEEEEEEEECCCCCeEEEecCEEEEcCCc
Confidence                        121367777765   2  37899999999995

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=97.12  E-value=0.00056  Score=66.49  Aligned_cols=37  Identities=27%  Similarity=0.320  Sum_probs=32.8

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ..|+|||+||||+.+|.+|.+..  .+++|.|+|+.+.|
T Consensus        21 p~vcIVGsGPAGfYtA~~LLk~~--~~~~Vdi~Ek~PvP   57 (468)
T KOG1800|consen   21 PRVCIVGSGPAGFYTAQHLLKRH--PNAHVDIFEKLPVP   57 (468)
T ss_pred             ceEEEECCCchHHHHHHHHHhcC--CCCeeEeeecCCcc
Confidence            37999999999999999998842  37999999999987

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=97.09  E-value=0.0045  Score=60.58  Aligned_cols=34  Identities=29%  Similarity=0.420  Sum_probs=30.3

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ..+|+|||+|++|+-+|..|++.    +.+|+++++.+
T Consensus       141 ~~~v~ViG~G~~~~e~a~~l~~~----~~~V~~v~~~~  174 (300)
T TIGR01292       141 NKEVAVVGGGDSAIEEALYLTRI----AKKVTLVHRRD  174 (300)
T ss_pred             CCEEEEECCChHHHHHHHHHHhh----cCEEEEEEeCc
Confidence            35899999999999999999985    88999998865

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=97.09  E-value=0.00058  Score=72.58  Aligned_cols=38  Identities=32%  Similarity=0.530  Sum_probs=34.2

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      +..++|+||||+|.+|.++|..|+.    +|++|+|+|++..
T Consensus         4 ~~~~~D~vIVGsG~aG~~lA~rLs~----~g~~VllLEaG~~   41 (542)
T COG2303           4 MKMEYDYVIVGSGSAGSVLAARLSD----AGLSVLVLEAGGP   41 (542)
T ss_pred             ccCCCCEEEECCCchhHHHHHHhcC----CCCeEEEEeCCCC
Confidence            4567999999999999999999996    4999999999963

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.07  E-value=0.0007  Score=68.21  Aligned_cols=37  Identities=32%  Similarity=0.452  Sum_probs=33.6

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ...+|+|||||++|+.+|..|++.    |++|+|+|+.+.+
T Consensus        17 ~~~~VvIIG~G~aGl~aA~~l~~~----g~~v~lie~~~~~   53 (352)
T PRK12770         17 TGKKVAIIGAGPAGLAAAGYLACL----GYEVHVYDKLPEP   53 (352)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHC----CCcEEEEeCCCCC
Confidence            346899999999999999999996    9999999998866

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.05  E-value=0.00055  Score=70.56  Aligned_cols=37  Identities=30%  Similarity=0.388  Sum_probs=34.3

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      ..+|+|||||||||++|..|+++    |++|+|+|+.+.++
T Consensus       123 g~~VaviGaGPAGl~~a~~L~~~----G~~Vtv~e~~~~~G  159 (457)
T COG0493         123 GKKVAVIGAGPAGLAAADDLSRA----GHDVTVFERVALDG  159 (457)
T ss_pred             CCEEEEECCCchHhhhHHHHHhC----CCeEEEeCCcCCCc
Confidence            37899999999999999999997    99999999999873

>PLN02785 Protein HOTHEAD

Probab=97.04  E-value=0.00076  Score=72.25  Aligned_cols=37  Identities=38%  Similarity=0.664  Sum_probs=33.2

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ...||+||||||.||+.+|..|++     +.+|+|||++..+
T Consensus        53 ~~~yD~IIVG~G~aG~~lA~~Ls~-----~~~VLllE~G~~~   89 (587)
T PLN02785         53 DSAYDYIVVGGGTAGCPLAATLSQ-----NFSVLLLERGGVP   89 (587)
T ss_pred             cccCCEEEECcCHHHHHHHHHHhc-----CCcEEEEecCCCC
Confidence            456999999999999999999999     4899999999753

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=97.04  E-value=0.0052  Score=62.21  Aligned_cols=49  Identities=20%  Similarity=0.182  Sum_probs=38.5

Q ss_pred             HHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCc
Q 010200          175 SSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKS  248 (515)
Q Consensus       175 ~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S  248 (515)
                      ..+.+.+++.| ++++.+++++++..                      .  .+.+.+|+++.+|.||.|.|...
T Consensus       195 ~~~~~~l~~~g-V~v~~~~~v~~i~~----------------------~--~v~~~~g~~i~~D~vi~a~G~~p  243 (364)
T TIGR03169       195 RLVLRLLARRG-IEVHEGAPVTRGPD----------------------G--ALILADGRTLPADAILWATGARA  243 (364)
T ss_pred             HHHHHHHHHCC-CEEEeCCeeEEEcC----------------------C--eEEeCCCCEEecCEEEEccCCCh
Confidence            45566667777 99999999998843                      2  45667888999999999999754

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.01  E-value=0.0019  Score=61.66  Aligned_cols=120  Identities=15%  Similarity=0.220  Sum_probs=65.7

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHH---HHHHHcCCchh-h
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATI---SFFKEIGAWQY-V  130 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~l~~lgl~~~-~  130 (515)
                      ...|.|||||.||.-+|+.+++.    |++|.++|=++.-.+...     ....-...+..+++   ..-...|+... +
T Consensus         3 ~~~i~VIGaGLAGSEAAwqiA~~----Gv~V~L~EMRp~k~TpaH-----~td~fAELVCSNSlr~~~~~navGlLk~EM   73 (439)
T COG1206           3 QQPINVIGAGLAGSEAAWQIAKR----GVPVILYEMRPVKGTPAH-----KTDNFAELVCSNSLRSDALTNAVGLLKAEM   73 (439)
T ss_pred             CCceEEEcccccccHHHHHHHHc----CCcEEEEEcccccCCCcc-----cccchhhheeccccccchhhhhhHHHHHHH
Confidence            34699999999999999999995    999999998765322110     00000111111111   11111222111 1


Q ss_pred             hhhhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEE
Q 010200          131 QQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSM  198 (515)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i  198 (515)
                      ...+.     +-+...+   ..     .. .--..+.++|..+-+.+-+.++..+.++|+.+ +|+++
T Consensus        74 R~lgS-----lii~~Ad---~~-----~V-PAGgALAVDR~~Fs~~vT~~l~~hpli~vire-Evt~i  126 (439)
T COG1206          74 RLLGS-----LIIEAAD---KH-----RV-PAGGALAVDRDGFSQAVTEKLENHPLIEVIRE-EVTEI  126 (439)
T ss_pred             HHhhh-----HHhhhhh---hc-----cC-CCCceeeecHhHHHHHHHHHHhcCCCEEEEcc-ccccC
Confidence            11110     0000000   00     00 01123679999999999999998887877765 66655

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.00  E-value=0.00093  Score=71.78  Aligned_cols=37  Identities=38%  Similarity=0.605  Sum_probs=33.8

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ...+|+||||||+||++|+.|++.    |++|+|+|+.+.+
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~----G~~V~v~e~~~~~  172 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRM----GHAVTIFEAGPKL  172 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC----CCeEEEEecCCCC
Confidence            456899999999999999999996    8999999999876

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=96.98  E-value=0.0076  Score=60.76  Aligned_cols=103  Identities=27%  Similarity=0.327  Sum_probs=79.9

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      .-.|+|||||..|+-+|..|.-.    +++|+++++.+.+-                                ..+    
T Consensus       213 ~~~vV~vG~G~ig~Evaa~l~~~----~~~VT~V~~e~~~~--------------------------------~~l----  252 (478)
T KOG1336|consen  213 GGKVVCVGGGFIGMEVAAALVSK----AKSVTVVFPEPWLL--------------------------------PRL----  252 (478)
T ss_pred             CceEEEECchHHHHHHHHHHHhc----CceEEEEccCccch--------------------------------hhh----
Confidence            56799999999999999999884    89999999888550                                000    


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                                                        --..+.+.+.+.+++.| ++++.++.+.+++.           .+ 
T Consensus       253 ----------------------------------f~~~i~~~~~~y~e~kg-Vk~~~~t~~s~l~~-----------~~-  285 (478)
T KOG1336|consen  253 ----------------------------------FGPSIGQFYEDYYENKG-VKFYLGTVVSSLEG-----------NS-  285 (478)
T ss_pred             ----------------------------------hhHHHHHHHHHHHHhcC-eEEEEecceeeccc-----------CC-
Confidence                                              00123455666677777 99999999999965           22 


Q ss_pred             cccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200          215 ATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                            .++...|...+|+++.||+||...|+.+..
T Consensus       286 ------~Gev~~V~l~dg~~l~adlvv~GiG~~p~t  315 (478)
T KOG1336|consen  286 ------DGEVSEVKLKDGKTLEADLVVVGIGIKPNT  315 (478)
T ss_pred             ------CCcEEEEEeccCCEeccCeEEEeecccccc
Confidence                  247788999999999999999999986654

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=96.96  E-value=0.0017  Score=68.70  Aligned_cols=97  Identities=22%  Similarity=0.384  Sum_probs=73.3

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhcc
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHA  136 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~  136 (515)
                      .-+|||||.-||=+|..|.+.    |.+|+|++=.+.+                       ++        ..++..   
T Consensus       147 ~avVIGGGLLGlEaA~~L~~~----Gm~~~Vvh~~~~l-----------------------Me--------rQLD~~---  188 (793)
T COG1251         147 KAVVIGGGLLGLEAARGLKDL----GMEVTVVHIAPTL-----------------------ME--------RQLDRT---  188 (793)
T ss_pred             CcEEEccchhhhHHHHHHHhC----CCceEEEeecchH-----------------------HH--------HhhhhH---
Confidence            469999999999999999996    9999999755422                       10        011111   


Q ss_pred             ccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcc
Q 010200          137 YFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSAT  216 (515)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~  216 (515)
                                                          --..|...+++.| ++++.++...++..                
T Consensus       189 ------------------------------------ag~lL~~~le~~G-i~~~l~~~t~ei~g----------------  215 (793)
T COG1251         189 ------------------------------------AGRLLRRKLEDLG-IKVLLEKNTEEIVG----------------  215 (793)
T ss_pred             ------------------------------------HHHHHHHHHHhhc-ceeecccchhhhhc----------------
Confidence                                                1145667777788 99999888887753                


Q ss_pred             cccccCCeeEEEcCCCcEEEeeEEEEecCCCc
Q 010200          217 TLFTKGHLAKLDLSDGTSLYAKLVVGADGGKS  248 (515)
Q Consensus       217 ~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S  248 (515)
                          ......+.|+||..+.+|+||.|+|.+-
T Consensus       216 ----~~~~~~vr~~DG~~i~ad~VV~a~GIrP  243 (793)
T COG1251         216 ----EDKVEGVRFADGTEIPADLVVMAVGIRP  243 (793)
T ss_pred             ----CcceeeEeecCCCcccceeEEEeccccc
Confidence                3456779999999999999999999754

>TIGR01810 betA choline dehydrogenase

Probab=96.83  E-value=0.0011  Score=70.78  Aligned_cols=34  Identities=29%  Similarity=0.476  Sum_probs=30.7

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      |+||||||.+|+.+|..|++.   .+++|+|+|+++.
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~---~~~~VlvlEaG~~   34 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSED---VSNSVLVLEAGGS   34 (532)
T ss_pred             CEEEECCCchHHHHHHHhccC---CCCeEEEEecCCC
Confidence            899999999999999999997   2379999999864

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=96.82  E-value=0.0069  Score=64.38  Aligned_cols=34  Identities=35%  Similarity=0.563  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      -+|+|||||..|+-+|..|+..    +.+|+|+++++.
T Consensus       352 k~VvVVGgG~~g~e~A~~L~~~----~~~Vtlv~~~~~  385 (517)
T PRK15317        352 KRVAVIGGGNSGVEAAIDLAGI----VKHVTVLEFAPE  385 (517)
T ss_pred             CEEEEECCCHHHHHHHHHHHhc----CCEEEEEEECcc
Confidence            4899999999999999999996    899999987763

>PRK13984 putative oxidoreductase; Provisional

Probab=96.80  E-value=0.0016  Score=70.65  Aligned_cols=38  Identities=32%  Similarity=0.432  Sum_probs=34.4

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ....+|+|||+|++|+++|..|++.    |++|+|||+.+.+
T Consensus       281 ~~~~~v~IIGaG~aGl~aA~~L~~~----G~~v~vie~~~~~  318 (604)
T PRK13984        281 KKNKKVAIVGSGPAGLSAAYFLATM----GYEVTVYESLSKP  318 (604)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHC----CCeEEEEecCCCC
Confidence            3467899999999999999999996    9999999998866

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.79  E-value=0.031  Score=53.86  Aligned_cols=35  Identities=37%  Similarity=0.495  Sum_probs=32.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ..||.||||||-+||++|-..++.    |.+|.++|--.
T Consensus        18 ydyDLIviGgGSgGLacaKeAa~~----G~kV~~lDfV~   52 (503)
T KOG4716|consen   18 YDYDLIVIGGGSGGLACAKEAADL----GAKVACLDFVK   52 (503)
T ss_pred             CCccEEEEcCCcchhhHHHHHHhc----CCcEEEEeecc
Confidence            579999999999999999999997    99999999743

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=96.68  E-value=0.002  Score=70.50  Aligned_cols=42  Identities=24%  Similarity=0.354  Sum_probs=36.6

Q ss_pred             CCCCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           50 TNNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        50 ~~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      +....-.+|+|||.|||||++|-.|-++    |+-|+||||...++
T Consensus      1780 p~~rtg~~vaiigsgpaglaaadqlnk~----gh~v~vyer~dr~g 1821 (2142)
T KOG0399|consen 1780 PAFRTGKRVAIIGSGPAGLAAADQLNKA----GHTVTVYERSDRVG 1821 (2142)
T ss_pred             cccccCcEEEEEccCchhhhHHHHHhhc----CcEEEEEEecCCcC
Confidence            3333457899999999999999999997    99999999999873

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=96.66  E-value=0.014  Score=60.74  Aligned_cols=33  Identities=21%  Similarity=0.273  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      -+|+|||||..|+-+|..|.+.    |.+|+|++++.
T Consensus       273 k~VvVIGgG~~a~d~A~~l~~~----G~~Vtlv~~~~  305 (449)
T TIGR01316       273 KSVVVIGGGNTAVDSARTALRL----GAEVHCLYRRT  305 (449)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc----CCEEEEEeecC
Confidence            4799999999999999999997    88999998875

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=96.63  E-value=0.013  Score=59.03  Aligned_cols=33  Identities=21%  Similarity=0.251  Sum_probs=28.8

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcE-EEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLS-VAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~-V~v~E~~~   92 (515)
                      -.|+|||+|+.|+-+|..|.+.    |.+ |+|+++..
T Consensus       173 ~~vvViG~G~~g~e~A~~l~~~----g~~~Vtvi~~~~  206 (352)
T PRK12770        173 KKVVVVGAGLTAVDAALEAVLL----GAEKVYLAYRRT  206 (352)
T ss_pred             CEEEEECCCHHHHHHHHHHHHc----CCCeEEEEeecc
Confidence            4799999999999999999885    776 99998764

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=96.56  E-value=0.0075  Score=60.80  Aligned_cols=45  Identities=20%  Similarity=0.211  Sum_probs=37.7

Q ss_pred             hcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200          182 QNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       182 ~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                      ++.+ +++++++.|+.+..                      ..-++.+.+|+++.++.+|+|+|. |+.
T Consensus       138 ke~g-Ie~~~~t~v~~~D~----------------------~~K~l~~~~Ge~~kys~LilATGs-~~~  182 (478)
T KOG1336|consen  138 KEKG-IELILGTSVVKADL----------------------ASKTLVLGNGETLKYSKLIIATGS-SAK  182 (478)
T ss_pred             hhcC-ceEEEcceeEEeec----------------------cccEEEeCCCceeecceEEEeecC-ccc
Confidence            3446 99999999999976                      556788899999999999999999 443

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=96.50  E-value=0.0032  Score=65.95  Aligned_cols=40  Identities=35%  Similarity=0.539  Sum_probs=36.6

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ....||.||||||-||+.+|..|++.   +..+|+|+|++..+
T Consensus        54 ~~~~yDyIVVGgGtAGcvlAarLSEn---~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   54 LDSSYDYIVVGGGTAGCVLAARLSEN---PNWSVLLLEAGGDP   93 (623)
T ss_pred             cccCCCEEEECCCchhHHHHHhhccC---CCceEEEEecCCCC
Confidence            45679999999999999999999997   47999999999887

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=96.45  E-value=0.024  Score=59.30  Aligned_cols=34  Identities=29%  Similarity=0.360  Sum_probs=30.1

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~   92 (515)
                      .-+|+|||||..|+-+|..|++.    |. +|++++++.
T Consensus       273 g~~VvViGgG~~g~e~A~~l~~~----G~~~Vtlv~~~~  307 (457)
T PRK11749        273 GKRVVVIGGGNTAMDAARTAKRL----GAESVTIVYRRG  307 (457)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCCeEEEeeecC
Confidence            45899999999999999999986    76 899998765

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=96.35  E-value=0.015  Score=57.79  Aligned_cols=60  Identities=13%  Similarity=0.071  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCc--EEEeeEEEEecCCCc-
Q 010200          172 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT--SLYAKLVVGADGGKS-  248 (515)
Q Consensus       172 ~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~--~~~ad~vV~AdG~~S-  248 (515)
                      .+..+-.+...+.+ +.+..++.|..+..                      ..+.+...+|+  ++.+-++|.++|... 
T Consensus       274 rl~~yae~~f~~~~-I~~~~~t~Vk~V~~----------------------~~I~~~~~~g~~~~iPYG~lVWatG~~~r  330 (491)
T KOG2495|consen  274 RLVEYAENQFVRDG-IDLDTGTMVKKVTE----------------------KTIHAKTKDGEIEEIPYGLLVWATGNGPR  330 (491)
T ss_pred             HHHHHHHHHhhhcc-ceeecccEEEeecC----------------------cEEEEEcCCCceeeecceEEEecCCCCCc
Confidence            35555666666667 99999999999843                      66777777775  789999999999643 


Q ss_pred             -hhhhhc
Q 010200          249 -RVRELA  254 (515)
Q Consensus       249 -~vr~~l  254 (515)
                       .++..+
T Consensus       331 p~~k~lm  337 (491)
T KOG2495|consen  331 PVIKDLM  337 (491)
T ss_pred             hhhhhHh
Confidence             344444

>PRK12831 putative oxidoreductase; Provisional

Probab=96.23  E-value=0.023  Score=59.41  Aligned_cols=34  Identities=35%  Similarity=0.405  Sum_probs=30.6

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      .-+|+|||||.+|+-+|..|.+.    |.+|+|++++.
T Consensus       281 gk~VvVIGgG~va~d~A~~l~r~----Ga~Vtlv~r~~  314 (464)
T PRK12831        281 GKKVAVVGGGNVAMDAARTALRL----GAEVHIVYRRS  314 (464)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHc----CCEEEEEeecC
Confidence            35899999999999999999997    88999998765

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.08  E-value=0.32  Score=47.35  Aligned_cols=38  Identities=34%  Similarity=0.384  Sum_probs=33.9

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ...||.+|||||-.|+++|...+.+    |.+|.|+|..-..
T Consensus        18 ~k~fDylvIGgGSGGvasARrAa~~----GAkv~l~E~~f~l   55 (478)
T KOG0405|consen   18 VKDFDYLVIGGGSGGVASARRAASH----GAKVALCELPFGL   55 (478)
T ss_pred             ccccceEEEcCCcchhHHhHHHHhc----CceEEEEecCCCc
Confidence            3579999999999999999999997    9999999987444

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=95.91  E-value=0.048  Score=57.25  Aligned_cols=34  Identities=32%  Similarity=0.357  Sum_probs=27.3

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCC-cEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G-~~V~v~E~~~   92 (515)
                      .-+|+|||||..|+-+|..+.+.    | .+|++++...
T Consensus       281 gk~VvVIGgG~~g~e~A~~~~~~----ga~~Vt~~~~~~  315 (471)
T PRK12810        281 GKHVVVIGGGDTGMDCVGTAIRQ----GAKSVTQRDIMP  315 (471)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHc----CCCeEEEccccC
Confidence            34799999999999999888876    5 4788776554

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.84  E-value=0.05  Score=58.43  Aligned_cols=64  Identities=14%  Similarity=0.093  Sum_probs=46.6

Q ss_pred             hHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEE-EcCCCc--EEEeeEEEEecCC
Q 010200          170 NKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKL-DLSDGT--SLYAKLVVGADGG  246 (515)
Q Consensus       170 r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~g~--~~~ad~vV~AdG~  246 (515)
                      -..+...|.+.+.+.| ++|+.++.++++..         +  +++     ...++.+ ...+|+  .+.++.||.|+|.
T Consensus       125 G~~i~~~L~~~~~~~g-i~i~~~~~~~~Li~---------~--~~g-----~v~Gv~~~~~~~g~~~~i~AkaVVLATGG  187 (570)
T PRK05675        125 GHALLHTLYQGNLKNG-TTFLNEWYAVDLVK---------N--QDG-----AVVGVIAICIETGETVYIKSKATVLATGG  187 (570)
T ss_pred             HHHHHHHHHHHHhccC-CEEEECcEEEEEEE---------c--CCC-----eEEEEEEEEcCCCcEEEEecCeEEECCCC
Confidence            3578899999998877 99999999999976         1  111     1222332 234565  6889999999999


Q ss_pred             Cchh
Q 010200          247 KSRV  250 (515)
Q Consensus       247 ~S~v  250 (515)
                      .+.+
T Consensus       188 ~~~~  191 (570)
T PRK05675        188 AGRI  191 (570)
T ss_pred             cccc
Confidence            8865

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=95.69  E-value=0.015  Score=55.57  Aligned_cols=40  Identities=28%  Similarity=0.431  Sum_probs=31.7

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ..+++.|+|||||-+|++.|..+.+.-  ..-+|.|+|....
T Consensus        36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl--~~g~vgIvep~e~   75 (446)
T KOG3851|consen   36 ARKHFKVLVVGGGSGGIGMAAKFYRKL--GSGSVGIVEPAED   75 (446)
T ss_pred             cccceEEEEEcCCcchhHHHHHHHhhc--CCCceEEecchhh
Confidence            346799999999999999999887741  2347999997664

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=95.64  E-value=0.036  Score=54.83  Aligned_cols=62  Identities=26%  Similarity=0.250  Sum_probs=47.7

Q ss_pred             HHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCC--Cchh
Q 010200          173 LHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGG--KSRV  250 (515)
Q Consensus       173 l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~--~S~v  250 (515)
                      |-++-.+.+++.| |.|+.+..|.++..                    ....+.+.+.||.++..|+||.|.|.  +|-+
T Consensus       395 ls~wt~ekir~~G-V~V~pna~v~sv~~--------------------~~~nl~lkL~dG~~l~tD~vVvavG~ePN~el  453 (659)
T KOG1346|consen  395 LSQWTIEKIRKGG-VDVRPNAKVESVRK--------------------CCKNLVLKLSDGSELRTDLVVVAVGEEPNSEL  453 (659)
T ss_pred             HHHHHHHHHHhcC-ceeccchhhhhhhh--------------------hccceEEEecCCCeeeeeeEEEEecCCCchhh
Confidence            4455566677766 99999999999865                    44568889999999999999999995  5555


Q ss_pred             hhhcC
Q 010200          251 RELAG  255 (515)
Q Consensus       251 r~~l~  255 (515)
                      .+.-|
T Consensus       454 a~~sg  458 (659)
T KOG1346|consen  454 AEASG  458 (659)
T ss_pred             ccccc
Confidence            44433

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=95.63  E-value=0.086  Score=56.53  Aligned_cols=34  Identities=32%  Similarity=0.463  Sum_probs=30.9

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      .-+|+|||||++|+-+|..|++.    |.+|+++++.+
T Consensus       143 g~~VvVIGgG~~g~E~A~~L~~~----g~~Vtli~~~~  176 (555)
T TIGR03143       143 GMDVFVIGGGFAAAEEAVFLTRY----ASKVTVIVREP  176 (555)
T ss_pred             CCEEEEECCCHHHHHHHHHHHcc----CCEEEEEEeCC
Confidence            35899999999999999999996    89999999876

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=95.49  E-value=0.065  Score=52.63  Aligned_cols=35  Identities=14%  Similarity=0.424  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      -..+|||||..||-++---.+.    |-+|+++|-.+..
T Consensus       212 k~~~viG~G~IGLE~gsV~~rL----GseVT~VEf~~~i  246 (506)
T KOG1335|consen  212 KKLTVIGAGYIGLEMGSVWSRL----GSEVTVVEFLDQI  246 (506)
T ss_pred             ceEEEEcCceeeeehhhHHHhc----CCeEEEEEehhhh
Confidence            5799999999999999999997    8999999977755

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=95.44  E-value=0.065  Score=59.72  Aligned_cols=33  Identities=33%  Similarity=0.406  Sum_probs=29.6

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcE-EEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLS-VAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~-V~v~E~~~   92 (515)
                      -+|+|||||.+|+-+|..|.+.    |.+ |+|++++.
T Consensus       571 k~VvVIGgG~~a~d~A~~~~r~----Ga~~Vtlv~r~~  604 (752)
T PRK12778        571 KKVAVVGGGNTAMDSARTAKRL----GAERVTIVYRRS  604 (752)
T ss_pred             CcEEEECCcHHHHHHHHHHHHc----CCCeEEEeeecC
Confidence            5799999999999999999997    776 99998775

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=95.43  E-value=0.76  Score=47.16  Aligned_cols=53  Identities=17%  Similarity=0.092  Sum_probs=38.0

Q ss_pred             HHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEc-CCCcEEEeeEEEEecCCC
Q 010200          174 HSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL-SDGTSLYAKLVVGADGGK  247 (515)
Q Consensus       174 ~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~g~~~~ad~vV~AdG~~  247 (515)
                      .+.|.+.+++.| ++|+++++|++|+.                    .++.+++.. .+|+++.||.||.|.-..
T Consensus       200 ~~~l~~~l~~~g-~~i~~~~~V~~i~~--------------------~~~~~~~~~~~~g~~~~~d~vi~a~p~~  253 (419)
T TIGR03467       200 PEPARRWLDSRG-GEVRLGTRVRSIEA--------------------NAGGIRALVLSGGETLPADAVVLAVPPR  253 (419)
T ss_pred             HHHHHHHHHHcC-CEEEcCCeeeEEEE--------------------cCCcceEEEecCCccccCCEEEEcCCHH
Confidence            344666777777 89999999999987                    223344333 367789999999986654

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=95.38  E-value=0.022  Score=50.10  Aligned_cols=32  Identities=34%  Similarity=0.447  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      +|.|+|||-.|.++|..|++.    |++|.++.++.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~----g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADN----GHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHC----TEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHc----CCEEEEEeccH
Confidence            589999999999999999996    99999999875

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=95.28  E-value=1.3  Score=46.90  Aligned_cols=59  Identities=17%  Similarity=0.163  Sum_probs=42.6

Q ss_pred             hHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCC-----cEEEeeEEEEec
Q 010200          170 NKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG-----TSLYAKLVVGAD  244 (515)
Q Consensus       170 r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-----~~~~ad~vV~Ad  244 (515)
                      -..|.+.|.+.+++.| ++|+++++|++|..+                   ++....+...++     +++.+|.||.+.
T Consensus       231 ~~~l~~aL~~~~~~~G-~~i~~~~~V~~I~~~-------------------~~~~~gv~~~~~~~~~~~~~~ad~VI~~~  290 (492)
T TIGR02733       231 MQTLSDRLVEALKRDG-GNLLTGQRVTAIHTK-------------------GGRAGWVVVVDSRKQEDLNVKADDVVANL  290 (492)
T ss_pred             HHHHHHHHHHHHHhcC-CEEeCCceEEEEEEe-------------------CCeEEEEEEecCCCCceEEEECCEEEECC
Confidence            4678999999999888 899999999999761                   111122223233     578999999888


Q ss_pred             CCCc
Q 010200          245 GGKS  248 (515)
Q Consensus       245 G~~S  248 (515)
                      -.+-
T Consensus       291 ~~~~  294 (492)
T TIGR02733       291 PPQS  294 (492)
T ss_pred             CHHH
Confidence            7643

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=95.21  E-value=0.1  Score=51.71  Aligned_cols=137  Identities=19%  Similarity=0.251  Sum_probs=81.8

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhh
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (515)
                      +.+..-+|||||-+-.+++...+...  .+.+|.++--.+....           .+    .|-+.+      ||-.-..
T Consensus       176 p~hvp~liigggtaAfaa~rai~s~d--a~A~vl~iseepelPY-----------mR----PPLSKE------LW~~~dp  232 (659)
T KOG1346|consen  176 PKHVPYLIIGGGTAAFAAFRAIKSND--ATAKVLMISEEPELPY-----------MR----PPLSKE------LWWYGDP  232 (659)
T ss_pred             cccCceeEEcCCchhhhcccccccCC--CCceEEeeccCccCcc-----------cC----CCcchh------ceecCCC
Confidence            45678999999988877776665432  4778888876665410           00    000000      1100001


Q ss_pred             hhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCC
Q 010200          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (515)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~  212 (515)
                      .   ....+.+....+.....|-      .+.++.++..+|....      .|++-+..|.+|+.+..            
T Consensus       233 n---~~k~lrfkqwsGkeRsiff------epd~FfvspeDLp~~~------nGGvAvl~G~kvvkid~------------  285 (659)
T KOG1346|consen  233 N---SAKKLRFKQWSGKERSIFF------EPDGFFVSPEDLPKAV------NGGVAVLRGRKVVKIDE------------  285 (659)
T ss_pred             C---hhhheeecccCCccceeEe------cCCcceeChhHCcccc------cCceEEEeccceEEeec------------
Confidence            0   1223333333333222221      2345678887775532      35699999999999964            


Q ss_pred             CCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200          213 PSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR  249 (515)
Q Consensus       213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~  249 (515)
                                ..-.|.++||.+|.+|-..+|+|..-+
T Consensus       286 ----------~d~~V~LnDG~~I~YdkcLIATG~~Pk  312 (659)
T KOG1346|consen  286 ----------EDKKVILNDGTTIGYDKCLIATGVRPK  312 (659)
T ss_pred             ----------ccCeEEecCCcEeehhheeeecCcCcc
Confidence                      334667789999999999999998654

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.15  E-value=0.021  Score=53.42  Aligned_cols=65  Identities=22%  Similarity=0.288  Sum_probs=46.4

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAW  127 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~  127 (515)
                      ++++|||+|..|.++|..|.+.    |++|+++|+++..-..-.   ........+..+....+.|+++|+.
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~----g~~Vv~Id~d~~~~~~~~---~~~~~~~~v~gd~t~~~~L~~agi~   65 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEE----GHNVVLIDRDEERVEEFL---ADELDTHVVIGDATDEDVLEEAGID   65 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhC----CCceEEEEcCHHHHHHHh---hhhcceEEEEecCCCHHHHHhcCCC
Confidence            3699999999999999999996    999999999886421100   0012233455556667788888763

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=94.92  E-value=0.23  Score=54.50  Aligned_cols=34  Identities=21%  Similarity=0.229  Sum_probs=28.7

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~   93 (515)
                      .+|+|||||..|+-+|..+.+.    |. +|+++.++..
T Consensus       469 k~VvVIGgG~~a~d~A~~a~r~----ga~~Vt~i~~~~~  503 (654)
T PRK12769        469 LNVVVLGGGDTAMDCVRTALRH----GASNVTCAYRRDE  503 (654)
T ss_pred             CeEEEECCcHHHHHHHHHHHHc----CCCeEEEeEecCC
Confidence            4799999999999999988886    65 7999887653

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=94.92  E-value=0.23  Score=52.07  Aligned_cols=35  Identities=23%  Similarity=0.225  Sum_probs=29.9

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~   93 (515)
                      .-+|+|||||..|+-+|..+.+.    |. +|+|+++++.
T Consensus       282 gk~VvVIGgG~~a~d~A~~a~~~----Ga~~Vtvv~r~~~  317 (467)
T TIGR01318       282 GKRVVVLGGGDTAMDCVRTAIRL----GAASVTCAYRRDE  317 (467)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHc----CCCeEEEEEecCc
Confidence            35799999999999999998886    74 7999998763

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=94.70  E-value=0.033  Score=50.16  Aligned_cols=33  Identities=33%  Similarity=0.585  Sum_probs=28.5

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      +|.|||+|.-|...|..++++    |++|+++|.++.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~----G~~V~l~d~~~~   33 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARA----GYEVTLYDRSPE   33 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHT----TSEEEEE-SSHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhC----CCcEEEEECChH
Confidence            489999999999999999996    999999999774

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=94.54  E-value=0.16  Score=55.49  Aligned_cols=34  Identities=26%  Similarity=0.356  Sum_probs=29.5

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~   92 (515)
                      .-+|+|||||..|+-+|..|.+.    |. +|+|++++.
T Consensus       323 gk~VvVIGgG~~a~e~A~~l~~~----Ga~~Vtlv~r~~  357 (652)
T PRK12814        323 GKKVVVIGGGNTAIDAARTALRL----GAESVTILYRRT  357 (652)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCCeEEEeeecC
Confidence            45899999999999999999986    64 699998776

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=94.53  E-value=0.044  Score=56.18  Aligned_cols=41  Identities=34%  Similarity=0.503  Sum_probs=31.4

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCC
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK   96 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~   96 (515)
                      |+.+|||||+|-|+.-+.+|.+|++.    |.+|+.+|+++..+.
T Consensus         1 m~~~yDviI~GTGl~esila~als~~----GkkVLhiD~n~yYGg   41 (438)
T PF00996_consen    1 MDEEYDVIILGTGLTESILAAALSRS----GKKVLHIDRNDYYGG   41 (438)
T ss_dssp             --SBESEEEE--SHHHHHHHHHHHHT----T--EEEE-SSSSSCG
T ss_pred             CCccceEEEECCCcHHHHHHHHHHhc----CCEEEecCCCCCcCC
Confidence            45689999999999999999999996    999999999998753

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=94.44  E-value=0.039  Score=49.88  Aligned_cols=34  Identities=35%  Similarity=0.490  Sum_probs=27.1

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ++|.|||.|-.||.+|..|++.    |++|+.+|.++.
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~----G~~V~g~D~~~~   34 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEK----GHQVIGVDIDEE   34 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHT----TSEEEEE-S-HH
T ss_pred             CEEEEECCCcchHHHHHHHHhC----CCEEEEEeCChH
Confidence            4799999999999999999996    999999998874

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=94.42  E-value=0.12  Score=52.82  Aligned_cols=35  Identities=26%  Similarity=0.571  Sum_probs=28.8

Q ss_pred             EEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           58 VAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        58 VvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ++|||+|++|+.+|..|.+..  .+.+++++.+....
T Consensus         1 ivivG~g~aG~~aa~~l~~~~--~~~~i~i~~~~~~~   35 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLL--LAAEITLIGREPKY   35 (415)
T ss_pred             CEEECCcHHHHHHHHHHHhcC--CCCCEEEEeCCCCC
Confidence            589999999999999888854  36788888877655

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=94.24  E-value=0.3  Score=55.25  Aligned_cols=35  Identities=26%  Similarity=0.303  Sum_probs=29.7

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCC-cEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G-~~V~v~E~~~   92 (515)
                      .-+|+|||||.+|+-+|..+.+.   .| .+|+|+.++.
T Consensus       668 GKrVVVIGGGnVAmD~Ar~a~Rl---gGakeVTLVyRr~  703 (1019)
T PRK09853        668 GKHVVVVGGGNTAMDAARAALRV---PGVEKVTVVYRRT  703 (1019)
T ss_pred             CCEEEEECCChHHHHHHHHHHhc---CCCceEEEEEccC
Confidence            35799999999999999988886   25 4899999876

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.23  E-value=0.051  Score=56.88  Aligned_cols=34  Identities=29%  Similarity=0.291  Sum_probs=31.1

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      .|+|||.|++|+++|..|++.    |++|+++|+...+
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~----G~~V~~~D~~~~~   35 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQ----GWEVVVSDRNDSP   35 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHC----CCEEEEECCCCch
Confidence            589999999999999999996    9999999988755

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=94.13  E-value=0.32  Score=55.36  Aligned_cols=34  Identities=26%  Similarity=0.339  Sum_probs=30.2

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      .-+|+|||||.+|+=+|..+.+.    |.+|+++.++.
T Consensus       447 Gk~VvVIGGG~tA~D~A~ta~R~----Ga~Vtlv~rr~  480 (944)
T PRK12779        447 GKEVFVIGGGNTAMDAARTAKRL----GGNVTIVYRRT  480 (944)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc----CCEEEEEEecC
Confidence            35799999999999999999997    88999998764

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.02  E-value=0.06  Score=56.72  Aligned_cols=33  Identities=30%  Similarity=0.444  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      .+|+|||+|++|+.+|..|++.    |++|+++|+.+
T Consensus        17 ~~v~viG~G~~G~~~A~~L~~~----G~~V~~~d~~~   49 (480)
T PRK01438         17 LRVVVAGLGVSGFAAADALLEL----GARVTVVDDGD   49 (480)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC----CCEEEEEeCCc
Confidence            4799999999999999999985    99999999765

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=93.80  E-value=0.11  Score=54.20  Aligned_cols=34  Identities=21%  Similarity=0.231  Sum_probs=30.3

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      .-+|+|||+|.+|+=.|..|++.    +.+|+++.|..
T Consensus       204 gk~VvVVG~G~Sg~diA~~L~~~----a~~V~l~~r~~  237 (461)
T PLN02172        204 NEVVVVIGNFASGADISRDIAKV----AKEVHIASRAS  237 (461)
T ss_pred             CCEEEEECCCcCHHHHHHHHHHh----CCeEEEEEeec
Confidence            35799999999999999999996    78999998765

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=93.68  E-value=0.099  Score=42.23  Aligned_cols=34  Identities=32%  Similarity=0.343  Sum_probs=29.8

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN   91 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~   91 (515)
                      +...|+|||||..|..-+..|.+.    |.+|+|+.+.
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~----gA~v~vis~~   39 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEA----GAKVTVISPE   39 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCC----TBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC----CCEEEEECCc
Confidence            346899999999999999999996    8999999765

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=93.67  E-value=0.094  Score=51.83  Aligned_cols=35  Identities=17%  Similarity=0.316  Sum_probs=31.4

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ..++|+|||+|-.|.++|..|+++    |++|+++.|+.
T Consensus         4 ~~m~I~IiG~GaiG~~lA~~L~~~----g~~V~~~~r~~   38 (313)
T PRK06249          4 ETPRIGIIGTGAIGGFYGAMLARA----GFDVHFLLRSD   38 (313)
T ss_pred             cCcEEEEECCCHHHHHHHHHHHHC----CCeEEEEEeCC
Confidence            346899999999999999999996    99999998865

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=93.42  E-value=0.24  Score=52.61  Aligned_cols=35  Identities=31%  Similarity=0.382  Sum_probs=28.4

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      .-+|+|||+|.+|.=.|..|++.    ..+|.+.=|...
T Consensus       183 gKrVlVVG~g~Sg~DIa~el~~~----a~~v~~s~R~~~  217 (531)
T PF00743_consen  183 GKRVLVVGGGNSGADIAVELSRV----AKKVYLSTRRGA  217 (531)
T ss_dssp             TSEEEEESSSHHHHHHHHHHTTT----SCCEEEECC---
T ss_pred             CCEEEEEeCCHhHHHHHHHHHHh----cCCeEEEEeccc
Confidence            45899999999999999999996    678888877653

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=93.41  E-value=0.085  Score=55.25  Aligned_cols=36  Identities=25%  Similarity=0.546  Sum_probs=32.6

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ..+|+|||||++|+-+|..|++.    |.+|+|+|+.+.+
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~----g~~Vtli~~~~~~  205 (461)
T TIGR01350       170 PESLVIIGGGVIGIEFASIFASL----GSKVTVIEMLDRI  205 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCcEEEEEcCCCC
Confidence            35899999999999999999996    8999999998765

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>TIGR02053 MerA mercuric reductase

Probab=93.31  E-value=0.13  Score=53.92  Aligned_cols=35  Identities=34%  Similarity=0.599  Sum_probs=32.1

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      -+|+|||||++|+-+|..|++.    |.+|+|+|+.+.+
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~----g~~Vtli~~~~~~  201 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARL----GSEVTILQRSDRL  201 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc----CCcEEEEEcCCcC
Confidence            5899999999999999999996    8999999998755

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=93.29  E-value=0.088  Score=51.89  Aligned_cols=33  Identities=36%  Similarity=0.619  Sum_probs=30.7

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      +|.|||+|.-|...|..|++.    |++|+++|+.+.
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~----G~~V~v~d~~~~   36 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARA----GHEVRLWDADPA   36 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHC----CCeeEEEeCCHH
Confidence            699999999999999999996    999999999874

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=93.07  E-value=0.13  Score=44.69  Aligned_cols=31  Identities=26%  Similarity=0.567  Sum_probs=28.8

Q ss_pred             EEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           58 VAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        58 VvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      |+|+|+|-.|+..|..|++.    |++|.++.|..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~----g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQA----GHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHT----TCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHC----CCceEEEEccc
Confidence            78999999999999999996    99999998876

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>COG4716 Myosin-crossreactive antigen [Function unknown]

Probab=92.99  E-value=0.097  Score=51.22  Aligned_cols=43  Identities=28%  Similarity=0.372  Sum_probs=36.6

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      ..+..+-|||||+|||++|..|-|-+-..|-++.|+|--+..+
T Consensus        20 VdqKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~G   62 (587)
T COG4716          20 VDQKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAG   62 (587)
T ss_pred             cccceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccC
Confidence            3456789999999999999999987666789999999888764

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=92.97  E-value=0.14  Score=45.47  Aligned_cols=35  Identities=29%  Similarity=0.365  Sum_probs=29.9

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      .+..|+|+|+|.+|..+|..|...    |.+|+++|...
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~l----Ga~v~~~d~~~   53 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGL----GAEVVVPDERP   53 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHT----T-EEEEEESSH
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHC----CCEEEeccCCH
Confidence            457899999999999999999998    99999999875

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=92.79  E-value=0.18  Score=52.88  Aligned_cols=35  Identities=23%  Similarity=0.433  Sum_probs=31.8

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      -+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+
T Consensus       173 ~~vvVIGgG~ig~E~A~~l~~~----G~~Vtlv~~~~~~  207 (466)
T PRK07818        173 KSIVIAGAGAIGMEFAYVLKNY----GVDVTIVEFLDRA  207 (466)
T ss_pred             CeEEEECCcHHHHHHHHHHHHc----CCeEEEEecCCCc
Confidence            5899999999999999999996    8999999987754

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=92.76  E-value=0.82  Score=49.12  Aligned_cols=46  Identities=7%  Similarity=0.047  Sum_probs=38.1

Q ss_pred             hcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200          182 QNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       182 ~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                      ++.+ ++++.+.+|+.+..                      ..-.|..+.|.++.+|-+|.|+|..-.+
T Consensus        70 ~~~~-i~L~~~~~v~~idr----------------------~~k~V~t~~g~~~~YDkLilATGS~pfi  115 (793)
T COG1251          70 EENG-ITLYTGEKVIQIDR----------------------ANKVVTTDAGRTVSYDKLIIATGSYPFI  115 (793)
T ss_pred             HHcC-cEEEcCCeeEEecc----------------------CcceEEccCCcEeecceeEEecCccccc
Confidence            4456 99999999999965                      4456777889999999999999987665

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=92.66  E-value=0.13  Score=50.50  Aligned_cols=34  Identities=29%  Similarity=0.470  Sum_probs=31.0

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      .++|+|||+|..|...|..|++.    |.+|+++.|..
T Consensus         2 ~m~I~IiGaGaiG~~~a~~L~~~----G~~V~lv~r~~   35 (305)
T PRK05708          2 SMTWHILGAGSLGSLWACRLARA----GLPVRLILRDR   35 (305)
T ss_pred             CceEEEECCCHHHHHHHHHHHhC----CCCeEEEEech
Confidence            46799999999999999999996    89999999864

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=92.65  E-value=0.17  Score=46.56  Aligned_cols=33  Identities=30%  Similarity=0.329  Sum_probs=29.8

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ..|+|||||.+|..-+..|.+.    |.+|+|+....
T Consensus        10 k~vlVvGgG~va~rk~~~Ll~~----ga~VtVvsp~~   42 (205)
T TIGR01470        10 RAVLVVGGGDVALRKARLLLKA----GAQLRVIAEEL   42 (205)
T ss_pred             CeEEEECcCHHHHHHHHHHHHC----CCEEEEEcCCC
Confidence            4799999999999999999996    89999998654

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=92.63  E-value=0.2  Score=43.95  Aligned_cols=31  Identities=23%  Similarity=0.390  Sum_probs=28.1

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEc
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIID   89 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E   89 (515)
                      ...|+|||||..|...|..|.+.    |.+|+|+.
T Consensus        13 ~~~vlVvGGG~va~rka~~Ll~~----ga~V~VIs   43 (157)
T PRK06719         13 NKVVVIIGGGKIAYRKASGLKDT----GAFVTVVS   43 (157)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC----CCEEEEEc
Confidence            45799999999999999999986    99999995

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.55  E-value=0.15  Score=49.76  Aligned_cols=34  Identities=26%  Similarity=0.344  Sum_probs=31.0

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      .+|.|||+|.-|...|..|++.    |++|+++|+++.
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~----G~~V~l~d~~~~   38 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALA----GYDVLLNDVSAD   38 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHC----CCeEEEEeCCHH
Confidence            4699999999999999999996    999999998763

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=92.50  E-value=1.1  Score=51.00  Aligned_cols=35  Identities=26%  Similarity=0.347  Sum_probs=29.7

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~   92 (515)
                      .-+|+|||||.+|+-+|..+.+.   .|. +|+|++++.
T Consensus       666 GK~VVVIGGGnvAmD~Ar~a~Rl---~Ga~kVtLVyRr~  701 (1012)
T TIGR03315       666 GKHVVVVGGGNTAMDAARAALRV---PGVEKVTVVYRRT  701 (1012)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHh---CCCceEEEEEccC
Confidence            45799999999999999998875   364 799999876

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.40  E-value=0.17  Score=49.20  Aligned_cols=34  Identities=29%  Similarity=0.469  Sum_probs=31.4

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      .|.|||+|.-|...|..|++.    |++|+++|+.+..
T Consensus         7 ~V~ViGaG~mG~~iA~~~a~~----G~~V~l~d~~~~~   40 (286)
T PRK07819          7 RVGVVGAGQMGAGIAEVCARA----GVDVLVFETTEEL   40 (286)
T ss_pred             EEEEEcccHHHHHHHHHHHhC----CCEEEEEECCHHH
Confidence            799999999999999999996    9999999988754

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=92.25  E-value=0.16  Score=43.27  Aligned_cols=32  Identities=31%  Similarity=0.518  Sum_probs=27.9

Q ss_pred             EEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           58 VAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        58 VvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ++|+|+|+.+.++|..++..    |++|+|+|.++.
T Consensus         1 L~I~GaG~va~al~~la~~l----g~~v~v~d~r~e   32 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALL----GFRVTVVDPRPE   32 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHC----TEEEEEEES-CC
T ss_pred             CEEEeCcHHHHHHHHHHHhC----CCEEEEEcCCcc
Confidence            58999999999999999997    999999999865

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.16  E-value=0.17  Score=49.39  Aligned_cols=34  Identities=29%  Similarity=0.421  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ..|.|||+|..|...|..|++.    |++|+++|+++.
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~----G~~V~l~d~~~~   37 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFH----GFDVTIYDISDE   37 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhc----CCeEEEEeCCHH
Confidence            4699999999999999999996    999999998763

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.08  E-value=0.23  Score=48.98  Aligned_cols=35  Identities=23%  Similarity=0.386  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ..|.|||+|.-|...|..++.+    |++|+++|..+..
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~a----G~~V~l~D~~~~~   42 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAH----GLDVVAWDPAPGA   42 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhC----CCeEEEEeCCHHH
Confidence            4699999999999999999996    9999999988743

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.07  E-value=0.21  Score=52.05  Aligned_cols=34  Identities=35%  Similarity=0.465  Sum_probs=31.1

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ..+|+|||+|.+|+.+|..|++.    |++|+++|+..
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~~----G~~V~~~d~~~   38 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKKL----GAKVILTDEKE   38 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC----CCEEEEEeCCc
Confidence            46799999999999999999996    99999999875

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.83  E-value=0.17  Score=49.42  Aligned_cols=33  Identities=24%  Similarity=0.486  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      +|.|||+|.-|...|..|++.    |++|+++|+++.
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~----G~~V~~~d~~~~   35 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVS----GFQTTLVDIKQE   35 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhC----CCcEEEEeCCHH
Confidence            599999999999999999996    999999998864

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=91.82  E-value=0.17  Score=52.98  Aligned_cols=36  Identities=28%  Similarity=0.440  Sum_probs=31.9

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ...+|+|+|+|++|+.++..++..    |.+|.++|.++.
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~l----GA~V~a~D~~~~  199 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSL----GAIVRAFDTRPE  199 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHC----CCEEEEEeCCHH
Confidence            357899999999999999999987    889999998774

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=91.78  E-value=0.12  Score=48.13  Aligned_cols=35  Identities=29%  Similarity=0.511  Sum_probs=28.7

Q ss_pred             EEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           58 VAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        58 VvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      .+|||||+||.++|-.|+++-  +..+|+++-..+..
T Consensus         2 fivvgggiagvscaeqla~~~--psa~illitass~v   36 (334)
T KOG2755|consen    2 FIVVGGGIAGVSCAEQLAQLE--PSAEILLITASSFV   36 (334)
T ss_pred             eEEEcCccccccHHHHHHhhC--CCCcEEEEeccHHH
Confidence            589999999999999999863  46788888766644

>TIGR00518 alaDH alanine dehydrogenase

Probab=91.77  E-value=0.2  Score=50.57  Aligned_cols=35  Identities=34%  Similarity=0.538  Sum_probs=31.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ...+|+|||+|.+|+.+|..|++.    |.+|+++|++.
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~l----Ga~V~v~d~~~  200 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGL----GATVTILDINI  200 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHC----CCeEEEEECCH
Confidence            346799999999999999999997    88999999875

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=91.70  E-value=0.29  Score=42.01  Aligned_cols=35  Identities=40%  Similarity=0.528  Sum_probs=30.4

Q ss_pred             ccEEEECC-CHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGG-GMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGg-G~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ++|+|||+ |..|.++|+.|...+.  +-++.++|...
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l--~~ei~L~D~~~   36 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGL--ADEIVLIDINE   36 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTT--SSEEEEEESSH
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC--CCceEEeccCc
Confidence            47999999 9999999999999753  45799999886

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=91.66  E-value=0.26  Score=45.04  Aligned_cols=34  Identities=35%  Similarity=0.528  Sum_probs=28.5

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      .-+|+|||+|.++.-+|..|++.    |.+|+++=|.+
T Consensus       167 ~k~V~VVG~G~SA~d~a~~l~~~----g~~V~~~~R~~  200 (203)
T PF13738_consen  167 GKRVVVVGGGNSAVDIAYALAKA----GKSVTLVTRSP  200 (203)
T ss_dssp             TSEEEEE--SHHHHHHHHHHTTT----CSEEEEEESS-
T ss_pred             CCcEEEEcChHHHHHHHHHHHhh----CCEEEEEecCC
Confidence            46899999999999999999997    89999998876

...

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=91.60  E-value=0.19  Score=49.30  Aligned_cols=30  Identities=30%  Similarity=0.405  Sum_probs=28.4

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDS   90 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~   90 (515)
                      +|+|||+|..|.++|..|++.    |++|++++|
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~----g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEA----GRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHC----CCceEEEec
Confidence            699999999999999999996    899999998

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=91.57  E-value=0.22  Score=48.91  Aligned_cols=32  Identities=22%  Similarity=0.461  Sum_probs=29.5

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      +|+|||+|-.|.++|..|++.    |++|++++|+.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~----g~~V~~~~r~~   33 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQA----GHDVTLVARRG   33 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhC----CCeEEEEECCh
Confidence            599999999999999999996    89999999854

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=91.49  E-value=0.3  Score=44.84  Aligned_cols=33  Identities=27%  Similarity=0.396  Sum_probs=29.3

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN   91 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~   91 (515)
                      ...|+|||||-.|...|..|.+.    |.+|+|+++.
T Consensus        10 ~k~vLVIGgG~va~~ka~~Ll~~----ga~V~VIs~~   42 (202)
T PRK06718         10 NKRVVIVGGGKVAGRRAITLLKY----GAHIVVISPE   42 (202)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC----CCeEEEEcCC
Confidence            45799999999999999999996    8999999754

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=91.47  E-value=0.21  Score=49.72  Aligned_cols=34  Identities=26%  Similarity=0.516  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ++|.|||.|-.||..|..|++.    |++|+.+|.++.
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~----GHeVv~vDid~~   34 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAEL----GHEVVCVDIDES   34 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHc----CCeEEEEeCCHH
Confidence            4799999999999999999997    999999998873

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=91.37  E-value=0.25  Score=48.62  Aligned_cols=34  Identities=35%  Similarity=0.512  Sum_probs=29.9

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCC--cEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKH--LSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G--~~V~v~E~~~~   93 (515)
                      ++|.|||+|..|.++|+.|++.    |  ..|.++|++..
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~----g~~~ev~l~D~~~~   36 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLR----GLASEIVLVDINKA   36 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHc----CCCCEEEEEECCch
Confidence            3699999999999999999996    6  58999998764

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=91.36  E-value=1.3  Score=50.98  Aligned_cols=34  Identities=18%  Similarity=0.197  Sum_probs=28.2

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~   92 (515)
                      .-+|+|||||.+|+=+|..+.+.    |. .|+++.++.
T Consensus       571 Gk~VvVIGgG~tA~D~A~~a~rl----Ga~~Vtiv~rr~  605 (1006)
T PRK12775        571 GKSVVVIGAGNTAMDCLRVAKRL----GAPTVRCVYRRS  605 (1006)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHc----CCCEEEEEeecC
Confidence            45899999999999999999997    65 577777654

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=91.29  E-value=0.25  Score=50.42  Aligned_cols=35  Identities=29%  Similarity=0.283  Sum_probs=31.2

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      .-.|+|+|+|+.|+.+|..|+..    |.+|+++|.++.
T Consensus       202 GktVvViG~G~IG~~va~~ak~~----Ga~ViV~d~d~~  236 (413)
T cd00401         202 GKVAVVAGYGDVGKGCAQSLRGQ----GARVIVTEVDPI  236 (413)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC----CCEEEEEECChh
Confidence            45799999999999999999986    889999998763

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=91.19  E-value=0.23  Score=48.51  Aligned_cols=34  Identities=29%  Similarity=0.472  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ..|.|||+|.-|...|..|++.    |++|+++|+++.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~----G~~V~l~d~~~~   37 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFART----GYDVTIVDVSEE   37 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhc----CCeEEEEeCCHH
Confidence            3599999999999999999996    999999998764

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=91.09  E-value=2.2  Score=41.88  Aligned_cols=35  Identities=26%  Similarity=0.414  Sum_probs=31.2

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      .+|+|||||-+.+--|+.|++.    +-+|+++=|++..
T Consensus       144 k~v~ViGgG~sAve~Al~L~~~----a~~Vtlv~r~~~~  178 (305)
T COG0492         144 KDVVVIGGGDSAVEEALYLSKI----AKKVTLVHRRDEF  178 (305)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHh----cCeEEEEecCccc
Confidence            4999999999999999999997    7789999887754

>PLN02852 ferredoxin-NADP+ reductase

Probab=90.93  E-value=2.5  Score=44.37  Aligned_cols=23  Identities=26%  Similarity=0.238  Sum_probs=20.2

Q ss_pred             CccEEEECCCHHHHHHHHHHhcC
Q 010200           55 QYDVAVVGGGMVGMALACSLASM   77 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~   77 (515)
                      .-+|+|||+|..|+-+|..|.+.
T Consensus       166 gk~VvVIGgGnvAlD~Ar~L~~~  188 (491)
T PLN02852        166 SDTAVVLGQGNVALDCARILLRP  188 (491)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC
Confidence            35799999999999999998873

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=90.85  E-value=0.3  Score=48.60  Aligned_cols=34  Identities=38%  Similarity=0.458  Sum_probs=30.8

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      .++|.|||+|.-|.+.|..|++.    |++|++++|.+
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~----G~~V~~~~r~~   37 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASK----GVPVRLWARRP   37 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHC----CCeEEEEeCCH
Confidence            35799999999999999999996    99999999865

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=90.63  E-value=2.1  Score=46.88  Aligned_cols=35  Identities=23%  Similarity=0.213  Sum_probs=28.9

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCC-cEEEEEcCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPA   93 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G-~~V~v~E~~~~   93 (515)
                      .-+|+|||||..|+-+|..+.+.    | .+|++++++..
T Consensus       451 gk~vvViGgG~~a~d~a~~~~~~----Ga~~Vt~v~rr~~  486 (639)
T PRK12809        451 GKRVVVLGGGDTTMDCLRTSIRL----NAASVTCAYRRDE  486 (639)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHc----CCCeEEEeeecCc
Confidence            35899999999999999887775    6 47999988753

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.54  E-value=0.26  Score=47.88  Aligned_cols=33  Identities=27%  Similarity=0.455  Sum_probs=30.4

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      +|.|||+|..|...|..|++.    |++|+++|.++.
T Consensus         5 kI~VIG~G~mG~~ia~~la~~----g~~V~~~d~~~~   37 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVA----GYDVVMVDISDA   37 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHC----CCceEEEeCCHH
Confidence            699999999999999999996    899999998764

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=90.53  E-value=0.8  Score=51.45  Aligned_cols=35  Identities=23%  Similarity=0.290  Sum_probs=25.0

Q ss_pred             ccEEEECCCHHHHHHHHHHhcC-CCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASM-PLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~-~~~~G~~V~v~E~~~   92 (515)
                      ..|||||||.+|+=+|....++ .  -+..+.+.+...
T Consensus       551 k~VVVIGGGnTAmD~ArtAlr~~~--l~ve~~l~~~~~  586 (1028)
T PRK06567        551 MPIAVIGGGLTSLDAATESLYYYK--KQVEEFAKDYIE  586 (1028)
T ss_pred             CCEEEEcCcHHHHHHHHHHHhhcc--chhhHHHHhhhh
Confidence            5799999999999999865541 1  156666666543

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=90.49  E-value=0.32  Score=39.98  Aligned_cols=32  Identities=31%  Similarity=0.570  Sum_probs=28.5

Q ss_pred             EEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           58 VAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        58 VvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      |+|||.|..|..++..|.+.    +.+|+++|+++.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~----~~~vvvid~d~~   32 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEG----GIDVVVIDRDPE   32 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHT----TSEEEEEESSHH
T ss_pred             eEEEcCCHHHHHHHHHHHhC----CCEEEEEECCcH
Confidence            79999999999999999995    789999999874

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=90.48  E-value=0.39  Score=43.97  Aligned_cols=35  Identities=29%  Similarity=0.423  Sum_probs=31.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~   92 (515)
                      ...+|+|||+|-.|...|..|++.    |+ +++|+|.+.
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~----Gvg~i~lvD~D~   55 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARA----GIGKLILVDFDV   55 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHc----CCCEEEEECCCE
Confidence            346899999999999999999997    77 699999885

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=90.36  E-value=0.32  Score=50.02  Aligned_cols=34  Identities=29%  Similarity=0.425  Sum_probs=31.2

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      .+|.|||.|-.|+.+|..|++.    |++|+++|+++.
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~----G~~V~~~D~~~~   37 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASR----QKQVIGVDINQH   37 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhC----CCEEEEEeCCHH
Confidence            5799999999999999999996    999999998764

>PRK13984 putative oxidoreductase; Provisional

Probab=90.27  E-value=1.6  Score=47.46  Aligned_cols=35  Identities=17%  Similarity=0.070  Sum_probs=27.8

Q ss_pred             cCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHh
Q 010200          393 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIA  433 (515)
Q Consensus       393 ~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~  433 (515)
                      .++|+.+||+++..      .+-.|+.++..+|..|.+.+.
T Consensus       568 ~~gVfAaGD~~~~~------~~v~Ai~~G~~AA~~I~~~L~  602 (604)
T PRK13984        568 IPWLFAGGDIVHGP------DIIHGVADGYWAAEGIDMYLR  602 (604)
T ss_pred             CCCEEEecCcCCch------HHHHHHHHHHHHHHHHHHHhc
Confidence            35799999998633      356799999999999988764

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=90.02  E-value=0.38  Score=50.16  Aligned_cols=36  Identities=19%  Similarity=0.347  Sum_probs=31.0

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ++|+|||.|-.|+.+|..|++.|  .|++|+.+|.++.
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g--~g~~V~gvD~~~~   37 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKC--PDIEVVVVDISVP   37 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcC--CCCeEEEEECCHH
Confidence            46999999999999999999863  2688999998764

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=89.94  E-value=0.53  Score=44.60  Aligned_cols=36  Identities=36%  Similarity=0.456  Sum_probs=32.8

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ....++|+|||+.+..+|..++..    |++|+|+|.++.
T Consensus        99 p~~~L~IfGaG~va~~la~la~~l----Gf~V~v~D~R~~  134 (246)
T TIGR02964        99 PAPHVVLFGAGHVGRALVRALAPL----PCRVTWVDSREA  134 (246)
T ss_pred             CCCEEEEECCcHHHHHHHHHHhcC----CCEEEEEeCCcc
Confidence            457899999999999999999997    999999998765

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=89.94  E-value=0.38  Score=48.16  Aligned_cols=33  Identities=27%  Similarity=0.422  Sum_probs=29.9

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      .+|.|||+|..|...|..|++.    |++|+++++..
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~----G~~V~~~~r~~   35 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAA----GADVTLIGRAR   35 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhc----CCcEEEEecHH
Confidence            4699999999999999999996    89999999753

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=89.83  E-value=0.48  Score=46.68  Aligned_cols=35  Identities=20%  Similarity=0.264  Sum_probs=31.5

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      .++|.|||+|--|.++|..|++.    |++|.+++|...
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~----G~~V~~~~r~~~   38 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASAN----GHRVRVWSRRSG   38 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHC----CCEEEEEeCCCC
Confidence            45799999999999999999996    999999998763

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=89.69  E-value=0.41  Score=47.56  Aligned_cols=32  Identities=31%  Similarity=0.561  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      +|.|||+|--|.++|..|++.    |++|.++.|+.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~----g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSK----KISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHC----CCeEEEEecCH
Confidence            599999999999999999996    89999999865

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=89.66  E-value=0.48  Score=46.53  Aligned_cols=34  Identities=29%  Similarity=0.525  Sum_probs=29.6

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~   93 (515)
                      .+|.|||+|..|+..|+.|+..    |+ +|+++|....
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~----g~~~VvlvDi~~~   36 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEK----ELADLVLLDVVEG   36 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHc----CCCeEEEEeCCCC
Confidence            4799999999999999999986    55 8999998553

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=89.59  E-value=2.7  Score=42.15  Aligned_cols=147  Identities=14%  Similarity=0.146  Sum_probs=76.1

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhcc
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHA  136 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~  136 (515)
                      .|.|||+|-++.-+-+.|....+....++..+-|.....      +.......-..+.|.-.+.+-  ++.+...+... 
T Consensus       189 ~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~------p~d~Skf~~e~F~P~y~dyfy--~l~~~~r~~ll-  259 (436)
T COG3486         189 SVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFL------PMDYSKFGLEYFSPEYTDYFY--GLPPEARDELL-  259 (436)
T ss_pred             eEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCC------ccccchhhhhhcCchhHHHHh--cCCHHHHHHHH-
Confidence            399999999999888888764322233455566655431      011111112233333333322  22222222111 


Q ss_pred             ccceEEEEeCCCccceeeecccCCCCcceEEech---HHHHHHHHHHHhc--CCCceEEcCCeeEEEEeCCCCCCcccCC
Q 010200          137 YFDKMQVWDYTGLGYTKYNARDVNKEILGCVVEN---KVLHSSLLSCMQN--TEFQKTIYPSRLTSMALLPSSSSISVDS  211 (515)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r---~~l~~~L~~~~~~--~g~v~i~~~~~v~~i~~~~~~~~~~~~~  211 (515)
                      .... -.++                     .|+-   .++-+.|.++-..  ...+.++.+++|..++.           
T Consensus       260 ~~~~-~~Yk---------------------gI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~-----------  306 (436)
T COG3486         260 RKQR-LLYK---------------------GISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEP-----------  306 (436)
T ss_pred             hhcC-cccc---------------------ccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeec-----------
Confidence            0010 0000                     1221   2344445544221  23488999999999975           


Q ss_pred             CCCcccccccC-CeeEEEcCC---C--cEEEeeEEEEecCCCchhhhhc
Q 010200          212 TPSATTLFTKG-HLAKLDLSD---G--TSLYAKLVVGADGGKSRVRELA  254 (515)
Q Consensus       212 ~~~~~~~~~~~-~~~~v~~~~---g--~~~~ad~vV~AdG~~S~vr~~l  254 (515)
                               .+ +.+.+.+..   |  ++++.|.||.|+|.+-.+-..+
T Consensus       307 ---------~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL  346 (436)
T COG3486         307 ---------AGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFL  346 (436)
T ss_pred             ---------CCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhh
Confidence                     22 225555432   2  3899999999999986555444

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=89.56  E-value=0.47  Score=46.80  Aligned_cols=33  Identities=30%  Similarity=0.524  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      .+|.|||+|.-|...|..|++.    |++|+++|++.
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~----g~~V~~~d~~~   37 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARK----GLQVVLIDVME   37 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhC----CCeEEEEECCH
Confidence            4699999999999999999996    89999999866

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=89.54  E-value=0.34  Score=49.84  Aligned_cols=33  Identities=36%  Similarity=0.537  Sum_probs=30.5

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      +|.|||.|..|+.+|..|++.    |++|+++|+++.
T Consensus         2 kI~vIGlG~~G~~lA~~La~~----G~~V~~~d~~~~   34 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADL----GHEVTGVDIDQE   34 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhc----CCeEEEEECCHH
Confidence            699999999999999999996    999999998764

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=89.32  E-value=0.37  Score=40.99  Aligned_cols=35  Identities=26%  Similarity=0.454  Sum_probs=30.3

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~   93 (515)
                      +.+|+|||+|-.|..+|..|++.    |. +++|+|.+..
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~----Gv~~i~lvD~d~v   37 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARS----GVGKITLVDDDIV   37 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHH----TTSEEEEEESSBB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHh----CCCceeecCCcce
Confidence            35799999999999999999997    66 7999998764

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=89.26  E-value=0.38  Score=46.13  Aligned_cols=36  Identities=33%  Similarity=0.378  Sum_probs=32.4

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ..+.+|+|||||.+|.-+|..+...    |.+|+|+|.+.
T Consensus       166 V~~~kv~iiGGGvvgtnaAkiA~gl----gA~Vtild~n~  201 (371)
T COG0686         166 VLPAKVVVLGGGVVGTNAAKIAIGL----GADVTILDLNI  201 (371)
T ss_pred             CCCccEEEECCccccchHHHHHhcc----CCeeEEEecCH
Confidence            3567899999999999999999997    89999999885

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=89.23  E-value=0.5  Score=46.19  Aligned_cols=34  Identities=38%  Similarity=0.567  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ..|.|||+|.-|...|..|++.    |++|.++|+.+.
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~----G~~V~~~d~~~~   38 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAA----GMDVWLLDSDPA   38 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhc----CCeEEEEeCCHH
Confidence            3599999999999999999996    999999998764

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=89.00  E-value=0.6  Score=39.75  Aligned_cols=35  Identities=29%  Similarity=0.494  Sum_probs=30.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcE-EEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLS-VAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~-V~v~E~~~   92 (515)
                      ....|+|||+|-+|-+++..|+..    |.+ |+|+-|..
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~----g~~~i~i~nRt~   46 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAAL----GAKEITIVNRTP   46 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHT----TSSEEEEEESSH
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEEECCH
Confidence            346899999999999999999997    765 99998765

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>TIGR00936 ahcY adenosylhomocysteinase

Probab=88.98  E-value=0.52  Score=47.92  Aligned_cols=36  Identities=25%  Similarity=0.349  Sum_probs=31.9

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ..-.|+|||.|+.|..+|..|+..    |.+|+++|.++.
T Consensus       194 ~Gk~VvViG~G~IG~~vA~~ak~~----Ga~ViV~d~dp~  229 (406)
T TIGR00936       194 AGKTVVVAGYGWCGKGIAMRARGM----GARVIVTEVDPI  229 (406)
T ss_pred             CcCEEEEECCCHHHHHHHHHHhhC----cCEEEEEeCChh
Confidence            345899999999999999999986    899999998773

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=88.95  E-value=0.69  Score=40.97  Aligned_cols=36  Identities=31%  Similarity=0.315  Sum_probs=30.4

Q ss_pred             CCCccEEEECCCH-HHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           53 DDQYDVAVVGGGM-VGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        53 ~~~~dVvIVGgG~-aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      -...+|+|||+|- +|..+|..|.+.    |.+|+++.|..
T Consensus        42 l~gk~vlViG~G~~~G~~~a~~L~~~----g~~V~v~~r~~   78 (168)
T cd01080          42 LAGKKVVVVGRSNIVGKPLAALLLNR----NATVTVCHSKT   78 (168)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHhhC----CCEEEEEECCc
Confidence            3457899999995 799999999985    88999998763

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=88.91  E-value=1.6  Score=45.23  Aligned_cols=37  Identities=14%  Similarity=0.016  Sum_probs=27.4

Q ss_pred             cCcEEEEcccccccCCccccc-----hhhcHHHHHHHHHHHH
Q 010200          393 SKRVVLIGDAAHTVHPLAGQG-----VNLGFGDASTLSRIIA  429 (515)
Q Consensus       393 ~~~v~lvGDAAh~~~P~~G~G-----~n~al~da~~La~~l~  429 (515)
                      .++|+.+||++....+..|+.     ...|...+..+++.|.
T Consensus       261 ~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~  302 (427)
T TIGR03385       261 VPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIA  302 (427)
T ss_pred             CCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhc
Confidence            478999999998877665532     3567777777777775

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=88.90  E-value=5.7  Score=40.18  Aligned_cols=41  Identities=20%  Similarity=0.318  Sum_probs=33.5

Q ss_pred             CCCCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           50 TNNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        50 ~~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      +...++.+|||+|.|-+|.++.-.|-..    -++|+|+..+...
T Consensus        50 ~~~~kKk~vVVLGsGW~a~S~lk~ldts----~YdV~vVSPRnyF   90 (491)
T KOG2495|consen   50 KNGGKKKRVVVLGSGWGAISLLKKLDTS----LYDVTVVSPRNYF   90 (491)
T ss_pred             CCCCCCceEEEEcCchHHHHHHHhcccc----ccceEEeccccce
Confidence            3455678999999999999998888874    7999999877643

>PRK04148 hypothetical protein; Provisional

Probab=88.74  E-value=0.4  Score=40.48  Aligned_cols=33  Identities=24%  Similarity=0.284  Sum_probs=29.6

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      .+|++||.| .|...|..|++.    |++|+.+|.++.
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~----G~~ViaIDi~~~   50 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKES----GFDVIVIDINEK   50 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHC----CCEEEEEECCHH
Confidence            579999999 999999999996    999999998773

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=88.61  E-value=0.44  Score=48.47  Aligned_cols=33  Identities=24%  Similarity=0.433  Sum_probs=29.4

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      +|.|||.|..|+.+|..|+.     |++|+++|++...
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-----G~~VigvD~d~~k   34 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-----NHEVVALDILPSR   34 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-----CCcEEEEECCHHH
Confidence            59999999999999988885     8999999998753

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=88.58  E-value=0.6  Score=46.50  Aligned_cols=35  Identities=29%  Similarity=0.414  Sum_probs=31.4

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~   93 (515)
                      ...|+|||+|-.|..+|..|+++    |+ +++|+|++..
T Consensus        24 ~~~VlIiG~GglGs~va~~La~a----Gvg~i~lvD~D~v   59 (338)
T PRK12475         24 EKHVLIVGAGALGAANAEALVRA----GIGKLTIADRDYV   59 (338)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHc----CCCEEEEEcCCcc
Confidence            46799999999999999999997    76 8999999874

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=88.45  E-value=0.67  Score=44.35  Aligned_cols=38  Identities=29%  Similarity=0.318  Sum_probs=31.9

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ....|+|||+|-.|..+|..|++.|+   -+++|+|.+...
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GV---g~itLiD~D~V~   66 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGI---GAITLIDMDDVC   66 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCC---CEEEEEeCCEec
Confidence            35689999999999999999999732   489999987643

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=88.26  E-value=0.49  Score=45.89  Aligned_cols=32  Identities=25%  Similarity=0.413  Sum_probs=29.4

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      +|.|||.|.-|.++|..|++.    |++|.++++++
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~----g~~V~~~d~~~   33 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSL----GHTVYGVSRRE   33 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHC----CCEEEEEECCH
Confidence            599999999999999999996    89999999865

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=88.25  E-value=0.57  Score=49.03  Aligned_cols=34  Identities=29%  Similarity=0.465  Sum_probs=30.9

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ..+|+|+|+|++|++++..++..    |.+|.++|+++
T Consensus       164 ~akVlViGaG~iGl~Aa~~ak~l----GA~V~v~d~~~  197 (511)
T TIGR00561       164 PAKVLVIGAGVAGLAAIGAANSL----GAIVRAFDTRP  197 (511)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC----CCEEEEEeCCH
Confidence            46899999999999999999997    88999999876

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=88.19  E-value=0.55  Score=46.53  Aligned_cols=32  Identities=38%  Similarity=0.512  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      +|.|||+|..|...|..|++.    |++|+++++.+
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~----g~~V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARN----GHDVTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhC----CCEEEEEECCH
Confidence            699999999999999999996    89999999865

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=87.98  E-value=0.5  Score=46.03  Aligned_cols=37  Identities=35%  Similarity=0.540  Sum_probs=32.1

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      +..||+|||||-+|.-+|+-|+-.    -..|+++|-.+..
T Consensus       353 ~gK~VAVIGGGNSGvEAAIDLAGi----v~hVtllEF~~eL  389 (520)
T COG3634         353 KGKRVAVIGGGNSGVEAAIDLAGI----VEHVTLLEFAPEL  389 (520)
T ss_pred             CCceEEEECCCcchHHHHHhHHhh----hheeeeeecchhh
Confidence            457999999999999999999875    4579999988866

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=87.95  E-value=0.87  Score=45.05  Aligned_cols=37  Identities=19%  Similarity=0.407  Sum_probs=31.7

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~~   94 (515)
                      +..+|+|||+|-.|.++|+.|+..    |+ ++.++|.++..
T Consensus         5 ~~~KI~IIGaG~vG~~ia~~la~~----gl~~i~LvDi~~~~   42 (321)
T PTZ00082          5 KRRKISLIGSGNIGGVMAYLIVLK----NLGDVVLFDIVKNI   42 (321)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC----CCCeEEEEeCCCch
Confidence            346899999999999999999885    65 89999988754

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=87.89  E-value=0.66  Score=48.95  Aligned_cols=35  Identities=29%  Similarity=0.558  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      .+|.|||+|.-|...|..|+++    |++|+|+|+.+..
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~----G~~V~v~D~~~~~   39 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLA----GIDVAVFDPHPEA   39 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhC----CCeEEEEeCCHHH
Confidence            3699999999999999999996    9999999987643

>PLN02256 arogenate dehydrogenase

Probab=87.73  E-value=0.92  Score=44.50  Aligned_cols=37  Identities=19%  Similarity=0.255  Sum_probs=31.6

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      .+...+|.|||.|..|-+.|..|++.    |.+|.++++..
T Consensus        33 ~~~~~kI~IIG~G~mG~slA~~L~~~----G~~V~~~d~~~   69 (304)
T PLN02256         33 KSRKLKIGIVGFGNFGQFLAKTFVKQ----GHTVLATSRSD   69 (304)
T ss_pred             cCCCCEEEEEeeCHHHHHHHHHHHhC----CCEEEEEECcc
Confidence            34557899999999999999999986    88999998764

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=87.68  E-value=0.72  Score=45.09  Aligned_cols=35  Identities=29%  Similarity=0.379  Sum_probs=31.8

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ...+|+|||.|.+|..++..|++.    |.+|+++++++
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~----Ga~V~v~~r~~  185 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKAL----GANVTVGARKS  185 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHC----CCEEEEEECCH
Confidence            356899999999999999999996    89999999886

>PRK06223 malate dehydrogenase; Reviewed

Probab=87.52  E-value=0.79  Score=45.11  Aligned_cols=34  Identities=32%  Similarity=0.481  Sum_probs=29.7

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~   93 (515)
                      .+|+|||+|..|.++|..|+..    |+ +|.++|....
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~----~~~ev~L~D~~~~   37 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALK----ELGDVVLFDIVEG   37 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC----CCeEEEEEECCCc
Confidence            4799999999999999999986    54 9999998653

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=87.50  E-value=0.85  Score=41.82  Aligned_cols=36  Identities=25%  Similarity=0.405  Sum_probs=31.6

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~   93 (515)
                      ....|+|||.|-.|..+|..|++.    |. +++|+|.+..
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~----Gv~~i~lvD~d~v   56 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGA----GVGTIVIVDDDHV   56 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHc----CCCeEEEecCCEE
Confidence            456899999999999999999997    65 8999998763

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=87.40  E-value=1  Score=44.42  Aligned_cols=36  Identities=33%  Similarity=0.527  Sum_probs=30.8

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCc--EEEEEcCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNPA   93 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~--~V~v~E~~~~   93 (515)
                      ...+|+|||+|-.|.++|+.|+..    |+  .+.++|....
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l~~~----~~~~el~L~D~~~~   42 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYALVNQ----GIADELVIIDINKE   42 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhc----CCCCEEEEEeCCCc
Confidence            346899999999999999999986    55  7999998654

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=87.19  E-value=0.83  Score=45.56  Aligned_cols=36  Identities=28%  Similarity=0.416  Sum_probs=31.7

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~   93 (515)
                      ...+|+|||+|-.|..+|..|++.    |. +++|+|.+..
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~a----Gvg~i~lvD~D~V   59 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRA----GVGKVTIVDRDYV   59 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHc----CCCeEEEEeCCcc
Confidence            346899999999999999999997    66 8999998753

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=87.13  E-value=0.71  Score=40.34  Aligned_cols=34  Identities=29%  Similarity=0.477  Sum_probs=27.6

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      -..|+|+|-|..|-.+|..|+..    |.+|+|.|.+|
T Consensus        23 Gk~vvV~GYG~vG~g~A~~lr~~----Ga~V~V~e~DP   56 (162)
T PF00670_consen   23 GKRVVVIGYGKVGKGIARALRGL----GARVTVTEIDP   56 (162)
T ss_dssp             TSEEEEE--SHHHHHHHHHHHHT----T-EEEEE-SSH
T ss_pred             CCEEEEeCCCcccHHHHHHHhhC----CCEEEEEECCh
Confidence            45799999999999999999997    99999999987

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=86.94  E-value=0.82  Score=46.81  Aligned_cols=36  Identities=28%  Similarity=0.315  Sum_probs=31.9

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ....|+|+|.|..|..+|..|+..    |.+|+++|+++.
T Consensus       211 ~Gk~VlViG~G~IG~~vA~~lr~~----Ga~ViV~d~dp~  246 (425)
T PRK05476        211 AGKVVVVAGYGDVGKGCAQRLRGL----GARVIVTEVDPI  246 (425)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC----CCEEEEEcCCch
Confidence            345799999999999999999996    899999998764

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=86.90  E-value=0.87  Score=44.81  Aligned_cols=34  Identities=32%  Similarity=0.491  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCC--cEEEEEcCCCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKH--LSVAIIDSNPAL   94 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G--~~V~v~E~~~~~   94 (515)
                      +|+|||+|-+|.++|+.|+..    |  ..+.++|+....
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~----g~~~ei~l~D~~~~~   37 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQ----GIADELVLIDINEEK   37 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhc----CCCCEEEEEeCCcch
Confidence            599999999999999999986    6  589999997643

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.87  E-value=0.91  Score=45.21  Aligned_cols=42  Identities=31%  Similarity=0.418  Sum_probs=37.3

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCC
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS   97 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~   97 (515)
                      .+..+||||||-|..-..+|.+++|.    |.+|+=+|+++..+..
T Consensus         5 lP~~fDvVViGTGlpESilAAAcSrs----G~sVLHlDsn~yYGg~   46 (547)
T KOG4405|consen    5 LPEEFDVVVIGTGLPESILAAACSRS----GSSVLHLDSNEYYGGN   46 (547)
T ss_pred             CchhccEEEEcCCCcHHHHHHHhhhc----CCceEeccCccccCCc
Confidence            34679999999999999999999996    9999999999987543

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=86.83  E-value=0.85  Score=44.31  Aligned_cols=34  Identities=29%  Similarity=0.491  Sum_probs=30.1

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~   92 (515)
                      ..+|+|||+|-+|-++|..|++.    |. +|+|++|..
T Consensus       127 ~k~vlIlGaGGaaraia~aL~~~----G~~~I~I~nR~~  161 (284)
T PRK12549        127 LERVVQLGAGGAGAAVAHALLTL----GVERLTIFDVDP  161 (284)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHc----CCCEEEEECCCH
Confidence            35799999999999999999996    76 799999875

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=86.68  E-value=0.78  Score=46.08  Aligned_cols=33  Identities=27%  Similarity=0.463  Sum_probs=27.0

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCC-cEEEEEcCCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPA   93 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G-~~V~v~E~~~~   93 (515)
                      .|+|+|+||.||.++..++..    | .+|+++|+.+.
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~----Ga~~Viv~d~~~~  204 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLL----GASVVIVVDRSPE  204 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHc----CCceEEEeCCCHH
Confidence            699999999999998877776    5 56777777663

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=86.59  E-value=6  Score=42.62  Aligned_cols=34  Identities=26%  Similarity=0.340  Sum_probs=27.5

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCC-cEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G-~~V~v~E~~~   92 (515)
                      .-.|+|||||..|+-.|..+.+.    | .+|+|+.+.+
T Consensus       267 gk~v~ViGgg~~a~d~a~~a~~l----ga~~v~ii~r~~  301 (564)
T PRK12771        267 GKRVVVIGGGNTAMDAARTARRL----GAEEVTIVYRRT  301 (564)
T ss_pred             CCCEEEECChHHHHHHHHHHHHc----CCCEEEEEEecC
Confidence            45799999999999999888886    5 5688887765

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=86.52  E-value=0.92  Score=42.19  Aligned_cols=32  Identities=31%  Similarity=0.342  Sum_probs=28.6

Q ss_pred             cEEEEC-CCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           57 DVAVVG-GGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        57 dVvIVG-gG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      +|.||| +|..|.++|..|++.    |++|.++.|++
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~----G~~V~v~~r~~   34 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKA----GNKIIIGSRDL   34 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhC----CCEEEEEEcCH
Confidence            699997 699999999999996    89999998765

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=86.48  E-value=1.2  Score=43.82  Aligned_cols=37  Identities=35%  Similarity=0.421  Sum_probs=30.4

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      +.+|+|||+|-.|.++|+.|+..+.  .-.+.|+|....
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~--~~el~LiD~~~~   39 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGL--ADELVLVDVVED   39 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCC--CCEEEEEeCCcc
Confidence            4689999999999999999988632  347999998663

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=86.32  E-value=0.49  Score=39.72  Aligned_cols=35  Identities=31%  Similarity=0.432  Sum_probs=28.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ..++|.|||+|-.|.++|..|.+.    |+.|.-+..+.
T Consensus         9 ~~l~I~iIGaGrVG~~La~aL~~a----g~~v~~v~srs   43 (127)
T PF10727_consen    9 ARLKIGIIGAGRVGTALARALARA----GHEVVGVYSRS   43 (127)
T ss_dssp             ---EEEEECTSCCCCHHHHHHHHT----TSEEEEESSCH
T ss_pred             CccEEEEECCCHHHHHHHHHHHHC----CCeEEEEEeCC
Confidence            468999999999999999999996    89988775443

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=86.27  E-value=1.2  Score=43.88  Aligned_cols=38  Identities=32%  Similarity=0.419  Sum_probs=35.3

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK   96 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~   96 (515)
                      .|||+|+|-|+.=+.++..|+..    |.+|+.+|+++..+.
T Consensus         6 ~yDvii~GTgl~esils~~Ls~~----~k~VlhiD~Nd~YG~   43 (434)
T COG5044           6 LYDVIILGTGLRESILSAALSWD----GKNVLHIDKNDYYGS   43 (434)
T ss_pred             cccEEEecccHHHHHHHHHhhhc----CceEEEEeCCCccCc
Confidence            69999999999999999999996    999999999998764

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=86.10  E-value=0.84  Score=48.15  Aligned_cols=33  Identities=27%  Similarity=0.472  Sum_probs=29.3

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      -.|+|+|.|++|++++..|.+.    |.+|++.|..+
T Consensus        13 ~~v~V~G~G~sG~aa~~~L~~~----G~~v~~~D~~~   45 (488)
T PRK03369         13 APVLVAGAGVTGRAVLAALTRF----GARPTVCDDDP   45 (488)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHC----CCEEEEEcCCH
Confidence            4699999999999999999885    99999999653

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=86.02  E-value=2.7  Score=43.31  Aligned_cols=57  Identities=14%  Similarity=0.098  Sum_probs=43.3

Q ss_pred             hHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEE-EcCCCc--EEEeeEEEEecCC
Q 010200          170 NKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKL-DLSDGT--SLYAKLVVGADGG  246 (515)
Q Consensus       170 r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~g~--~~~ad~vV~AdG~  246 (515)
                      ..++.+.|.+.+++.| ++++.+++|++++.                    .+..+.. ...+|.  ++.+|.||.|+|.
T Consensus       258 G~rL~~aL~~~l~~~G-v~I~~g~~V~~v~~--------------------~~~~V~~v~~~~g~~~~i~AD~VVLAtGr  316 (422)
T PRK05329        258 GLRLQNALRRAFERLG-GRIMPGDEVLGAEF--------------------EGGRVTAVWTRNHGDIPLRARHFVLATGS  316 (422)
T ss_pred             hHHHHHHHHHHHHhCC-CEEEeCCEEEEEEE--------------------eCCEEEEEEeeCCceEEEECCEEEEeCCC
Confidence            3478899999998888 99999999999976                    2233433 333443  6899999999997


Q ss_pred             C
Q 010200          247 K  247 (515)
Q Consensus       247 ~  247 (515)
                      .
T Consensus       317 f  317 (422)
T PRK05329        317 F  317 (422)
T ss_pred             c
Confidence            4

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=85.91  E-value=0.81  Score=48.26  Aligned_cols=35  Identities=31%  Similarity=0.384  Sum_probs=31.7

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ..|.|||+|.-|...|..|+++    |++|+++|+.+..
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~a----G~~V~l~d~~~e~   40 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASA----GHQVLLYDIRAEA   40 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhC----CCeEEEEeCCHHH
Confidence            4699999999999999999996    9999999998754

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=85.88  E-value=0.93  Score=47.40  Aligned_cols=34  Identities=29%  Similarity=0.352  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      .+|+|+|.|.+|+++|..|++.    |++|++.|+.+.
T Consensus        15 ~~i~v~G~G~sG~a~a~~L~~~----G~~V~~~D~~~~   48 (458)
T PRK01710         15 KKVAVVGIGVSNIPLIKFLVKL----GAKVTAFDKKSE   48 (458)
T ss_pred             CeEEEEcccHHHHHHHHHHHHC----CCEEEEECCCCC
Confidence            3699999999999999999996    999999998753

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=85.69  E-value=0.83  Score=41.74  Aligned_cols=37  Identities=32%  Similarity=0.479  Sum_probs=32.6

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ....|.|||||.-|.-.|.-.+..    |++|.++|++...
T Consensus        10 ~~~~V~ivGaG~MGSGIAQv~a~s----g~~V~l~d~~~~a   46 (298)
T KOG2304|consen   10 EIKNVAIVGAGQMGSGIAQVAATS----GLNVWLVDANEDA   46 (298)
T ss_pred             cccceEEEcccccchhHHHHHHhc----CCceEEecCCHHH
Confidence            345799999999999999999996    9999999988753

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=85.56  E-value=1.2  Score=39.31  Aligned_cols=34  Identities=29%  Similarity=0.499  Sum_probs=28.8

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      .+|.|||-|--|...|..|.+.    |++|.+|++.+.
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~----g~~v~~~d~~~~   35 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKA----GYEVTVYDRSPE   35 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHT----TTEEEEEESSHH
T ss_pred             CEEEEEchHHHHHHHHHHHHhc----CCeEEeeccchh
Confidence            4699999999999999999996    999999998853

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=85.50  E-value=1.3  Score=38.00  Aligned_cols=34  Identities=29%  Similarity=0.406  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPAL   94 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~~   94 (515)
                      .|+|||.|-.|..+|..|++.    |. +++|+|.+..-
T Consensus         1 ~VliiG~GglGs~ia~~L~~~----Gv~~i~ivD~d~v~   35 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARS----GVGKITLIDFDTVE   35 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHC----CCCEEEEEcCCCcC
Confidence            489999999999999999997    65 79999987643

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=85.45  E-value=1  Score=44.25  Aligned_cols=33  Identities=24%  Similarity=0.371  Sum_probs=29.0

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCC--cEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKH--LSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G--~~V~v~E~~~   92 (515)
                      .+|+|||+|..|.++|..|++.    |  .+|.++++.+
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~----g~~~~V~~~dr~~   41 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRL----GLAGEIVGADRSA   41 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhc----CCCcEEEEEECCH
Confidence            4799999999999999999986    6  4899998865

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=85.45  E-value=1.2  Score=42.04  Aligned_cols=38  Identities=24%  Similarity=0.276  Sum_probs=31.7

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ...+|+|||+|-.|..+|..|++.|+   -+++|+|.+..-
T Consensus        23 ~~~~VlvvG~GglGs~va~~La~~Gv---g~i~lvD~D~ve   60 (240)
T TIGR02355        23 KASRVLIVGLGGLGCAASQYLAAAGV---GNLTLLDFDTVS   60 (240)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCC---CEEEEEeCCccc
Confidence            34689999999999999999999843   379999987643

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=85.22  E-value=1.1  Score=39.95  Aligned_cols=33  Identities=24%  Similarity=0.439  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~   93 (515)
                      +|+|||+|-.|...|..|++.    |. +++++|.+..
T Consensus         1 ~VlViG~GglGs~ia~~La~~----Gvg~i~lvD~D~v   34 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARS----GVGNLKLVDFDVV   34 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHc----CCCeEEEEeCCEE
Confidence            489999999999999999997    66 5999998763

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PTZ00117 malate dehydrogenase; Provisional

Probab=85.03  E-value=1.4  Score=43.69  Aligned_cols=37  Identities=16%  Similarity=0.338  Sum_probs=31.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCC-cEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G-~~V~v~E~~~~~   94 (515)
                      +..+|+|||+|-.|.++|+.|+..    | ..+.++|.+...
T Consensus         4 ~~~KI~IIGaG~vG~~ia~~l~~~----~~~~l~L~Di~~~~   41 (319)
T PTZ00117          4 KRKKISMIGAGQIGSTVALLILQK----NLGDVVLYDVIKGV   41 (319)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHC----CCCeEEEEECCCcc
Confidence            456899999999999999999986    5 579999987643

>PLN02529 lysine-specific histone demethylase 1

Probab=84.89  E-value=43  Score=37.18  Aligned_cols=38  Identities=18%  Similarity=0.163  Sum_probs=29.3

Q ss_pred             cCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHh
Q 010200          393 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIA  433 (515)
Q Consensus       393 ~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~  433 (515)
                      .+++.+.||+.+...|-+   +.-|++++...|+.|.+.++
T Consensus       562 ~grL~FAGEaTs~~~pgt---VeGAi~SG~RAA~eIl~~l~  599 (738)
T PLN02529        562 SGRLFFAGEATTRQYPAT---MHGAFLSGLREASRILHVAR  599 (738)
T ss_pred             CCCEEEEEHHHhCCCCeE---eHHHHHHHHHHHHHHHHHHh
Confidence            479999999988877755   44578888888877777654

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=84.84  E-value=1.2  Score=43.30  Aligned_cols=35  Identities=23%  Similarity=0.331  Sum_probs=31.4

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ....|+|||.|-.|.++|..|+..    |.+|++++|..
T Consensus       150 ~gk~v~IiG~G~iG~avA~~L~~~----G~~V~v~~R~~  184 (287)
T TIGR02853       150 HGSNVMVLGFGRTGMTIARTFSAL----GARVFVGARSS  184 (287)
T ss_pred             CCCEEEEEcChHHHHHHHHHHHHC----CCEEEEEeCCH
Confidence            346899999999999999999986    89999999876

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=84.82  E-value=1.3  Score=46.14  Aligned_cols=34  Identities=29%  Similarity=0.306  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ..|+|+|+|.+|+++|..|++.    |.+|.+.|+...
T Consensus         6 k~v~v~G~g~~G~s~a~~l~~~----G~~V~~~d~~~~   39 (447)
T PRK02472          6 KKVLVLGLAKSGYAAAKLLHKL----GANVTVNDGKPF   39 (447)
T ss_pred             CEEEEEeeCHHHHHHHHHHHHC----CCEEEEEcCCCc
Confidence            4699999999999999999996    999999997653

>PLN02494 adenosylhomocysteinase

Probab=84.73  E-value=1.2  Score=45.87  Aligned_cols=36  Identities=19%  Similarity=0.278  Sum_probs=31.8

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ..-.|+|+|.|..|..+|..|+..    |.+|+++|+++.
T Consensus       253 aGKtVvViGyG~IGr~vA~~aka~----Ga~VIV~e~dp~  288 (477)
T PLN02494        253 AGKVAVICGYGDVGKGCAAAMKAA----GARVIVTEIDPI  288 (477)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC----CCEEEEEeCCch
Confidence            346799999999999999999876    899999998874

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=84.72  E-value=1.3  Score=41.03  Aligned_cols=36  Identities=22%  Similarity=0.431  Sum_probs=31.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~   93 (515)
                      ....|+|||+|-.|..+|..|++.    |. +++|+|.+..
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~----Gvg~i~lvD~D~v   63 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARS----GVGNLKLVDFDVV   63 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHc----CCCeEEEEeCCEe
Confidence            346899999999999999999997    55 5999998763

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=84.71  E-value=1.4  Score=41.47  Aligned_cols=40  Identities=25%  Similarity=0.386  Sum_probs=32.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCC-----C--CCcEEEEEcCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPL-----T--KHLSVAIIDSNPA   93 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~-----~--~G~~V~v~E~~~~   93 (515)
                      .+.+|+|||+|-.|..++..|++.|.     .  .|.+++|+|.+..
T Consensus        10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~V   56 (244)
T TIGR03736        10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTV   56 (244)
T ss_pred             CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEE
Confidence            56789999999999999999999731     1  1448999998764

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=84.62  E-value=1.2  Score=41.66  Aligned_cols=34  Identities=24%  Similarity=0.469  Sum_probs=30.1

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCc---EEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHL---SVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~---~V~v~E~~~   92 (515)
                      ..+|+|+|+|-+|...|..|.+.    |.   ++.|++|..
T Consensus        25 ~~rvlvlGAGgAg~aiA~~L~~~----G~~~~~i~ivdr~g   61 (226)
T cd05311          25 EVKIVINGAGAAGIAIARLLLAA----GAKPENIVVVDSKG   61 (226)
T ss_pred             CCEEEEECchHHHHHHHHHHHHc----CcCcceEEEEeCCC
Confidence            35799999999999999999997    65   599999985

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=84.61  E-value=1.5  Score=45.57  Aligned_cols=35  Identities=23%  Similarity=0.238  Sum_probs=31.0

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ..|+|+|.|.+|+++|..|++.    |+.|+++|....+
T Consensus         6 ~~~~v~G~g~~G~~~a~~l~~~----g~~v~~~d~~~~~   40 (445)
T PRK04308          6 KKILVAGLGGTGISMIAYLRKN----GAEVAAYDAELKP   40 (445)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC----CCEEEEEeCCCCc
Confidence            4699999999999999999996    9999999976643

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=84.61  E-value=1.5  Score=40.72  Aligned_cols=33  Identities=18%  Similarity=0.312  Sum_probs=28.9

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN   91 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~   91 (515)
                      ...|+|||||.+++-=+..|.+.    |.+|+|+-..
T Consensus        25 ~~~VLVVGGG~VA~RK~~~Ll~~----gA~VtVVap~   57 (223)
T PRK05562         25 KIKVLIIGGGKAAFIKGKTFLKK----GCYVYILSKK   57 (223)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC----CCEEEEEcCC
Confidence            45799999999999999999996    8999999544

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=84.57  E-value=1.4  Score=41.74  Aligned_cols=36  Identities=28%  Similarity=0.361  Sum_probs=31.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~   93 (515)
                      ...+|+|||.|..|..+|..|++.    |. +++|+|.+..
T Consensus        31 ~~~~VliiG~GglGs~va~~La~~----Gvg~i~lvD~D~v   67 (245)
T PRK05690         31 KAARVLVVGLGGLGCAASQYLAAA----GVGTLTLVDFDTV   67 (245)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHc----CCCEEEEEcCCEE
Confidence            356899999999999999999998    54 7999998763

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=84.57  E-value=1.1  Score=43.84  Aligned_cols=32  Identities=34%  Similarity=0.535  Sum_probs=28.2

Q ss_pred             EEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCC
Q 010200           58 VAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (515)
Q Consensus        58 VvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~   93 (515)
                      |.|||+|-.|..+|..|+..    |+ +|+++|.++.
T Consensus         1 I~IIGaG~vG~~ia~~la~~----~l~eV~L~Di~e~   33 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALK----ELGDVVLLDIVEG   33 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhC----CCcEEEEEeCCCc
Confidence            68999999999999999986    55 9999998864

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=84.38  E-value=0.96  Score=50.00  Aligned_cols=35  Identities=31%  Similarity=0.407  Sum_probs=31.7

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ..|.|||+|.-|...|+.++++    |++|+++|..+..
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~----G~~V~l~d~~~~~  348 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASK----GVPVIMKDINQKA  348 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhC----CCeEEEEeCCHHH
Confidence            4699999999999999999996    9999999988743

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=84.34  E-value=1  Score=46.92  Aligned_cols=33  Identities=33%  Similarity=0.585  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      +|+|||+|..|..+|..|.+.    |++|+++|+++.
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~----g~~v~vid~~~~   34 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGE----NNDVTVIDTDEE   34 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhC----CCcEEEEECCHH
Confidence            699999999999999999985    899999998764

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=84.20  E-value=1.4  Score=46.58  Aligned_cols=35  Identities=29%  Similarity=0.399  Sum_probs=31.7

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      -.|.|||+|.-|...|..|+++    |++|+++|+.+..
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~a----G~~V~l~D~~~e~   42 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQA----GHTVLLYDARAGA   42 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC----CCeEEEEeCCHHH
Confidence            4699999999999999999996    9999999998754

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=83.84  E-value=1.1  Score=43.64  Aligned_cols=33  Identities=21%  Similarity=0.445  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      +|.|||.|..|..+|..|++.    |++|+++++.+.
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~----G~~V~~~dr~~~   33 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKA----GYQLHVTTIGPE   33 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHC----CCeEEEEcCCHH
Confidence            489999999999999999996    999999998763

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=83.66  E-value=1.8  Score=39.32  Aligned_cols=34  Identities=29%  Similarity=0.372  Sum_probs=29.4

Q ss_pred             CccEEEECC-CHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGG-GMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGg-G~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ...|+|+|| |..|..+|..|++.    |.+|.++.|+.
T Consensus        28 ~~~vlVlGgtG~iG~~~a~~l~~~----g~~V~l~~R~~   62 (194)
T cd01078          28 GKTAVVLGGTGPVGQRAAVLLARE----GARVVLVGRDL   62 (194)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHC----CCEEEEEcCCH
Confidence            357999997 99999999999985    88999997654

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=83.51  E-value=1.2  Score=43.70  Aligned_cols=33  Identities=21%  Similarity=0.420  Sum_probs=29.0

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ++|.|+|+|-.|...|+.|+++    |.+|+++=|..
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~----g~~V~~~~R~~   33 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKA----GHDVTLLVRSR   33 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhC----CCeEEEEecHH
Confidence            3699999999999999999997    77888886665

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=83.50  E-value=1.1  Score=49.46  Aligned_cols=35  Identities=29%  Similarity=0.371  Sum_probs=31.8

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ..|.|||||.-|...|+.++++    |++|+++|..+..
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~----G~~V~l~d~~~~~  348 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASK----GTPIVMKDINQHS  348 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhC----CCeEEEEeCCHHH
Confidence            4699999999999999999996    9999999998754

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PLN02572 UDP-sulfoquinovose synthase

Probab=83.46  E-value=2  Score=44.66  Aligned_cols=35  Identities=37%  Similarity=0.524  Sum_probs=29.9

Q ss_pred             CCCccEEEECC-CHHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 010200           53 DDQYDVAVVGG-GMVGMALACSLASMPLTKHLSVAIIDSN   91 (515)
Q Consensus        53 ~~~~dVvIVGg-G~aGl~~A~~L~~~~~~~G~~V~v~E~~   91 (515)
                      -+...|+|.|| |..|..++..|++.    |++|+++++.
T Consensus        45 ~~~k~VLVTGatGfIGs~Lv~~L~~~----G~~V~~~d~~   80 (442)
T PLN02572         45 SKKKKVMVIGGDGYCGWATALHLSKR----GYEVAIVDNL   80 (442)
T ss_pred             ccCCEEEEECCCcHHHHHHHHHHHHC----CCeEEEEecc
Confidence            34457999997 99999999999995    9999999854

>PRK08328 hypothetical protein; Provisional

Probab=83.40  E-value=1.7  Score=40.82  Aligned_cols=35  Identities=34%  Similarity=0.427  Sum_probs=29.7

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ...|+|||+|-.|..+|..|++.|+   -+++|+|.+.
T Consensus        27 ~~~VlIiG~GGlGs~ia~~La~~Gv---g~i~lvD~D~   61 (231)
T PRK08328         27 KAKVAVVGVGGLGSPVAYYLAAAGV---GRILLIDEQT   61 (231)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC---CEEEEEcCCc
Confidence            4679999999999999999999842   3689998765

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=83.39  E-value=2.2  Score=39.01  Aligned_cols=34  Identities=35%  Similarity=0.321  Sum_probs=30.2

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ...|+|+|.|-.|..+|..|.+.    |.+|+++|++.
T Consensus        28 gk~v~I~G~G~vG~~~A~~L~~~----G~~Vvv~D~~~   61 (200)
T cd01075          28 GKTVAVQGLGKVGYKLAEHLLEE----GAKLIVADINE   61 (200)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC----CCEEEEEcCCH
Confidence            45799999999999999999996    99999998654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=83.27  E-value=2.8  Score=32.34  Aligned_cols=33  Identities=33%  Similarity=0.373  Sum_probs=28.9

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDS   90 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~   90 (515)
                      ..+++|+|.|-.|..+|..|.+.   .+.+|.++++
T Consensus        23 ~~~v~i~G~G~~g~~~a~~l~~~---~~~~v~v~~r   55 (86)
T cd05191          23 GKTVVVLGAGEVGKGIAKLLADE---GGKKVVLCDR   55 (86)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc---CCCEEEEEcC
Confidence            35799999999999999999996   2678999998

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	515
2r0c_A	549	Structure Of The Substrate-Free Form Of The Rebecca		4e-08
4eip_A	549	Native And K252c Bound Rebc-10x Length = 549		4e-08
2qa2_A	499	Crystal Structure Of Cabe, An Aromatic Hydroxylase		1e-07
3all_A	379	Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-C		8e-07
3fmw_A	570	The Crystal Structure Of Mtmoiv, A Baeyer-Villiger		9e-07
3alk_A	379	Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-C		1e-06
3alh_A	379	Higher Resolution And Native Structure Of 2-Methyl-		1e-06
3gmc_A	415	Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-C		2e-06
3gmb_A	415	Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-C		2e-05
3v3n_A	378	Crystal Structure Of Tetx2 T280a: An Adaptive Mutan		7e-05
2y6r_A	398	Structure Of The Tetx Monooxygenase In Complex With		7e-05
4a6n_A	398	Structure Of The Tetracycline Degrading Monooxygena		7e-05
2xdo_A	398	Structure Of The Tetracycline Degrading Monooxygena		7e-05
1pn0_A	665	Phenol Hydroxylase From Trichosporon Cutaneum Lengt		1e-04
2x3n_A	399	Crystal Structure Of Pqsl, A Probable Fad-Dependent		1e-04
3p9u_A	378	Crystal Structure Of Tetx2 From Bacteroides Thetaio		3e-04
2xyo_A	399	Structural Basis For A New Tetracycline Resistance		4e-04
2qa1_A	500	Crystal Structure Of Pgae, An Aromatic Hydroxylase		4e-04
1bgn_A	394	P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cy		6e-04

>pdb|2R0C|A Chain A, Structure Of The Substrate-Free Form Of The Rebeccamycin Biosynthetic Enzyme Rebc Length = 549

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 356 DATLSAKECFEVPPRVVKLASERMVFPLSLKH-----ANNYVSKRVVLIGDAAHTVHPLA 410
           DA+ S  + FE+  R V   +E  V   S  H     A+++ + RV L GDAAHT+ P  
Sbjct: 266 DASKSTMDSFELVRRAVAFDTEIEVLSDSEWHLTHRVADSFSAGRVFLTGDAAHTLSPSG 325
Query: 411 GQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMM 459
           G G+N G G A+ L   +A  +   A  G   LL  YE ER+P  I  +
Sbjct: 326 GFGMNTGIGSAADLGWKLAATLRGWAGPG---LLATYEEERRPVAITSL 371

>pdb|4EIP|A Chain A, Native And K252c Bound Rebc-10x Length = 549

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 356 DATLSAKECFEVPPRVVKLASERMVFPLSLKH-----ANNYVSKRVVLIGDAAHTVHPLA 410
           DA+ S  + FE+  R V   +E  V   S  H     A+++ + RV L GDAAHT+ P  
Sbjct: 266 DASKSTMDSFELVRRAVAFDTEIEVLSDSEWHLTHRVADSFSAGRVFLTGDAAHTLSPSG 325
Query: 411 GQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMM 459
           G G+N G G A+ L   +A  +   A  G   LL  YE ER+P  I  +
Sbjct: 326 GFGMNTGIGSAADLGWKLAATLRGWAGPG---LLATYEEERRPVAITSL 371

>pdb|2QA2|A Chain A, Crystal Structure Of Cabe, An Aromatic Hydroxylase From Angucycline Biosynthesis, Determined To 2.7 A Resolution Length = 499

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 86/223 (38%), Gaps = 39/223 (17%)
Query: 234 SLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIAL 293
           SL  + VVG DGG+S VR+ AGF   G S S+   +  +   +         +P G +  
Sbjct: 152 SLTTRYVVGCDGGRSTVRKAAGFDFPGTSASREMFLADIRGCEITPRPIGETVPLGMVMS 211
Query: 294 LPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHP-KSISSGSVDMFSW 352
            P+GD    I+       A                       GP P + +++      +W
Sbjct: 212 APLGDGVDRIIVCERGAPARRRT-------------------GPPPYQEVAA------AW 246
Query: 353 FRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQ 412
            R    L+ ++     P  V        F    +  + Y   RV+L GD+AH   P  GQ
Sbjct: 247 QR----LTGQDISHGEPVWVS------AFGDPARQVSAYRRGRVLLAGDSAHVHLPAGGQ 296
Query: 413 GVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPAN 455
           G+N+   D+  L   +A   AV +    A LL  Y  ER P  
Sbjct: 297 GMNVSVQDSVNLGWKLA---AVVSGRAPAGLLDTYHEERHPVG 336

>pdb|3ALL|A Chain A, Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase, Mutant Y270a Length = 379

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 113/276 (40%), Gaps = 42/276 (15%)
Query: 224 LAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN--YCA 281
           + +L L  G  L A L+VGADG  S+VR+  GFK   W      I   V   K+   +  
Sbjct: 136 VGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLIVPRMKKELGHGE 195
Query: 282 WQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKS-MNEDD-FVKILNHALDYGYGPHP 339
           W               DN  ++ W   P+      S  NE++ ++ ++  A D      P
Sbjct: 196 W---------------DNTIDM-WNFWPRVQRILYSPCNENELYLGLMAPAAD------P 233
Query: 340 KSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLI 399
           +  SS  +D+  W      L  + C        KL + R     + K  +++   +V L+
Sbjct: 234 RG-SSVPIDLEVWVEMFPFL--EPCL---IEAAKLKTARYDKAETTK-LDSWTRGKVALV 286
Query: 400 GDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMM 459
           GDAAH + P   QG      +A +LS+ + EG +V         L  +E   +P      
Sbjct: 287 GDAAHAMCPALAQGAGCAMVNAFSLSQDLEEGSSV------EDALVAWETRIRPITDRCQ 340
Query: 460 AVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKR 495
           A+   +    S+  G  N+   AA   A+Y  PL+R
Sbjct: 341 ALSGDYAANRSLSKG--NMFTPAALEAARY-DPLRR 373

>pdb|3FMW|A Chain A, The Crystal Structure Of Mtmoiv, A Baeyer-Villiger Monooxygenase From The Mithramycin Biosynthetic Pathway In Streptomyces Argillaceus. Length = 570

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 82/223 (36%), Gaps = 42/223 (18%)
Query: 235 LYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEH-NKENYCAWQRFLPAGPIAL 293
           + A+  VG DGG+S VR LA  +  G   +  A+I  V    +E    W+R         
Sbjct: 194 VRARYGVGCDGGRSTVRRLAADRFPGTEATVRALIGYVTTPEREVPRRWER--------- 244
Query: 294 LPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSG---SVDMF 350
                                       D + +L    + G GP   S S+G   + D  
Sbjct: 245 --------------------------TPDGILVLAFPPEGGLGPGWSSSSTGHSPAADEG 278
Query: 351 SWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLA 410
                D   +       P  + +  S    F  + + A  Y S RV+L GDAAH   P+ 
Sbjct: 279 PVTLEDLGAAVARVRGTPLTLTEPVSWLSRFGDASRQAKRYRSGRVLLAGDAAHVHFPIG 338
Query: 411 GQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKP 453
           GQG+N G  DA  L   +A  +      G   LL  Y  ER P
Sbjct: 339 GQGLNTGLQDAVNLGWKLAARV---RGWGSEELLDTYHDERHP 378

>pdb|3ALK|A Chain A, Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase, Mutant Y270f Length = 379

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 113/279 (40%), Gaps = 48/279 (17%)
Query: 224 LAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN--YCA 281
           + +L L  G  L A L+VGADG  S+VR+  GFK   W      I   V   K+   +  
Sbjct: 136 VGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLIVPRMKKELGHGE 195
Query: 282 WQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKS-MNEDD-FVKILNHALDYGYGPHP 339
           W               DN  ++ W   P+      S  NE++ ++ ++  A D      P
Sbjct: 196 W---------------DNTIDM-WNFWPRVQRILYSPCNENELYLGLMAPAAD------P 233
Query: 340 KSISSGSVDMFSWFRGDATLSAKECFE-VPPRVVKLASERMVF--PLSLKHANNYVSKRV 396
           +  SS  +D+  W          E F  + P +++ A  +            +++   +V
Sbjct: 234 RG-SSVPIDLEVWV---------EMFPFLEPCLIEAAKLKTARYDKFETTKLDSWTRGKV 283
Query: 397 VLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANI 456
            L+GDAAH + P   QG      +A +LS+ + EG +V         L  +E   +P   
Sbjct: 284 ALVGDAAHAMCPALAQGAGCAMVNAFSLSQDLEEGSSV------EDALVAWETRIRPITD 337
Query: 457 VMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKR 495
              A+   +    S+  G  N+   AA   A+Y  PL+R
Sbjct: 338 RCQALSGDYAANRSLSKG--NMFTPAALEAARY-DPLRR 373

>pdb|3ALH|A Chain A, Higher Resolution And Native Structure Of 2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase Length = 379

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 113/276 (40%), Gaps = 42/276 (15%)
Query: 224 LAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN--YCA 281
           + +L L  G  L A L+VGADG  S+VR+  GFK   W      I   V   K+   +  
Sbjct: 136 VGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLIVPRMKKELGHGE 195
Query: 282 WQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKS-MNEDD-FVKILNHALDYGYGPHP 339
           W               DN  ++ W   P+      S  NE++ ++ ++  A D      P
Sbjct: 196 W---------------DNTIDM-WNFWPRVQRILYSPCNENELYLGLMAPAAD------P 233
Query: 340 KSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLI 399
           +  SS  +D+  W      L  + C        KL + R     + K  +++   +V L+
Sbjct: 234 RG-SSVPIDLEVWVEMFPFL--EPCL---IEAAKLKTARYDKYETTK-LDSWTRGKVALV 286
Query: 400 GDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMM 459
           GDAAH + P   QG      +A +LS+ + EG +V         L  +E   +P      
Sbjct: 287 GDAAHAMCPALAQGAGCAMVNAFSLSQDLEEGSSV------EDALVAWETRIRPITDRCQ 340
Query: 460 AVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKR 495
           A+   +    S+  G  N+   AA   A+Y  PL+R
Sbjct: 341 ALSGDYAANRSLSKG--NMFTPAALEAARY-DPLRR 373

>pdb|3GMC|A Chain A, Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase With Substrate Bound Length = 415

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 113/276 (40%), Gaps = 42/276 (15%)
Query: 224 LAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN--YCA 281
           + +L L  G  L A L+VGADG  S+VR+  GFK   W      I   V   K+   +  
Sbjct: 172 VGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLIVPRMKKELGHGE 231
Query: 282 WQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKS-MNEDD-FVKILNHALDYGYGPHP 339
           W               DN  ++ W   P+      S  NE++ ++ ++  A D      P
Sbjct: 232 W---------------DNTIDM-WNFWPRVQRILYSPCNENELYLGLMAPAAD------P 269
Query: 340 KSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLI 399
           +  SS  +D+  W      L  + C        KL + R     + K  +++   +V L+
Sbjct: 270 RG-SSVPIDLEVWVEMFPFL--EPCL---IEAAKLKTARYDKYETTK-LDSWTRGKVALV 322
Query: 400 GDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMM 459
           GDAAH + P   QG      +A +LS+ + EG +V         L  +E   +P      
Sbjct: 323 GDAAHAMCPALAQGAGCAMVNAFSLSQDLEEGSSV------EDALVAWETRIRPITDRCQ 376
Query: 460 AVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKR 495
           A+   +    S+  G  N+   AA   A+Y  PL+R
Sbjct: 377 ALSGDYAANRSLSKG--NMFTPAALEAARY-DPLRR 409

>pdb|3GMB|A Chain A, Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase Length = 415

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 109/276 (39%), Gaps = 42/276 (15%)
Query: 224 LAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN--YCA 281
           + +L L  G  L A L+VGADG  S+VR+  GFK   W      I   V   K+   +  
Sbjct: 172 VGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLIVPRXKKELGHGE 231
Query: 282 WQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKS-MNEDD-FVKILNHALDYGYGPHP 339
           W               DN  +  W   P+      S  NE++ ++ +   A D      P
Sbjct: 232 W---------------DNTID-XWNFWPRVQRILYSPCNENELYLGLXAPAAD------P 269
Query: 340 KSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLI 399
           +  SS  +D+  W      L  + C        KL + R     + K  +++   +V L+
Sbjct: 270 RG-SSVPIDLEVWVEXFPFL--EPCL---IEAAKLKTARYDKYETTK-LDSWTRGKVALV 322
Query: 400 GDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMM 459
           GDAAH   P   QG      +A +LS+ + EG +V         L  +E   +P      
Sbjct: 323 GDAAHAXCPALAQGAGCAXVNAFSLSQDLEEGSSV------EDALVAWETRIRPITDRCQ 376
Query: 460 AVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKR 495
           A+   +    S+  G  N    AA   A+Y  PL+R
Sbjct: 377 ALSGDYAANRSLSKG--NXFTPAALEAARY-DPLRR 409

>pdb|3V3N|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In Complex With Minocycline Length = 378

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 362 KECFEVPPRVVKLASERMVFPLSLKHANNYVSKR---VVLIGDAAHTVHPLAGQGVNLGF 418
           KE        V LA+   +FPL       + SKR   + +IGDAAH + P AGQGVN G 
Sbjct: 265 KELIHATLSFVGLATR--IFPLE----KPWKSKRPLPITMIGDAAHLMPPFAGQGVNSGL 318
Query: 419 GDASTLSRIIAEG 431
            DA  LS  +A+G
Sbjct: 319 VDALILSDNLADG 331

>pdb|2Y6R|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The Substrate 7-Chlortetracycline Length = 398

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 362 KECFEVPPRVVKLASERMVFPLSLKHANNYVSKR---VVLIGDAAHTVHPLAGQGVNLGF 418
           KE        V LA+   +FPL       + SKR   + +IGDAAH + P AGQGVN G 
Sbjct: 285 KELIHTTLSFVGLATR--IFPLEKP----WKSKRPLPITMIGDAAHLMPPFAGQGVNSGL 338
Query: 419 GDASTLSRIIAEG 431
            DA  LS  +A+G
Sbjct: 339 VDALILSDNLADG 351

>pdb|4A6N|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx In Complex With Tigecycline Length = 398

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 362 KECFEVPPRVVKLASERMVFPLSLKHANNYVSKR---VVLIGDAAHTVHPLAGQGVNLGF 418
           KE        V LA+   +FPL       + SKR   + +IGDAAH + P AGQGVN G 
Sbjct: 285 KELIHTTLSFVGLATR--IFPLEKP----WKSKRPLPITMIGDAAHLMPPFAGQGVNSGL 338
Query: 419 GDASTLSRIIAEG 431
            DA  LS  +A+G
Sbjct: 339 VDALILSDNLADG 351

>pdb|2XDO|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx2 From Bacteroides Thetaiotaomicron Length = 398

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 362 KECFEVPPRVVKLASERMVFPLSLKHANNYVSKR---VVLIGDAAHTVHPLAGQGVNLGF 418
           KE        V LA+   +FPL       + SKR   + +IGDAAH + P AGQGVN G 
Sbjct: 285 KELIHTTLSFVGLATR--IFPLEKP----WKSKRPLPITMIGDAAHLMPPFAGQGVNSGL 338
Query: 419 GDASTLSRIIAEG 431
            DA  LS  +A+G
Sbjct: 339 VDALILSDNLADG 351

>pdb|1PN0|A Chain A, Phenol Hydroxylase From Trichosporon Cutaneum Length = 665

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 96/246 (39%), Gaps = 46/246 (18%)
Query: 234 SLYAKLVVGADGGKSRVRELAGFKTTG------WSYSQNAIICTVEHNKENYCAWQRFLP 287
           +++ K V+G DGG S VR   GF+  G      W    +A+  +   +  + CA      
Sbjct: 216 TVHCKYVIGCDGGHSWVRRTLGFEMIGEQTDYIWGV-LDAVPASNFPDIRSRCAIHS-AE 273
Query: 288 AGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDF---VKILNHALDYGYGPHPKSISS 344
           +G I ++P  +N       +  + A     ++   F   V I N    +    HP +   
Sbjct: 274 SGSIMIIPRENNLVRFYVQLQAR-AEKGGRVDRTKFTPEVVIANAKKIF----HPYTFDV 328
Query: 345 GSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAH 404
             +D F+             + +  RV +  S+                +RV + GDA H
Sbjct: 329 QQLDWFT------------AYHIGQRVTEKFSK---------------DERVFIAGDACH 361
Query: 405 TVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDG 464
           T  P AGQG+N    D   L   +  G+ +     +  +LK YE ER+P    ++     
Sbjct: 362 THSPKAGQGMNTSMMDTYNLGWKL--GLVLTGR-AKRDILKTYEEERQPFAQALIDFDHQ 418
Query: 465 FQKAYS 470
           F + +S
Sbjct: 419 FSRLFS 424

>pdb|2X3N|A Chain A, Crystal Structure Of Pqsl, A Probable Fad-Dependent Monooxygenase From Pseudomonas Aeruginosa Length = 399

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 96/238 (40%), Gaps = 44/238 (18%)
Query: 226 KLDLSDGTSLYAKLVVGADGGKSRVRE-LAGFKTTGWSYSQNAII-------CTVEHNKE 277
           ++ L+DG  L  ++VVGADG  S VR  L         Y    ++       C  E N+ 
Sbjct: 144 QVRLNDGRVLRPRVVVGADGIASYVRRRLLDIDVERRPYPSPMLVGTFALAPCVAERNR- 202
Query: 278 NYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGP 337
            Y   Q     G     PIG + + +V +  P++  + + +  D   + L   L    G 
Sbjct: 203 LYVDSQ----GGLAYFYPIGFDRARLVVSF-PRE--EARELMADTRGESLRRRLQRFVGD 255
Query: 338 HPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVV 397
                +  +V   S F+G                          P+   + + Y +  V 
Sbjct: 256 ESAE-AIAAVTGTSRFKG-------------------------IPIGYLNLDRYWADNVA 289
Query: 398 LIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPAN 455
           ++GDA H VHP+ GQG+NL   DAS L+  +   +     + +A  L  Y+AER P N
Sbjct: 290 MLGDAIHNVHPITGQGMNLAIEDASALADALDLALRDACALEDA--LAGYQAERFPVN 345

>pdb|3P9U|A Chain A, Crystal Structure Of Tetx2 From Bacteroides Thetaiotaomicron With Substrate Analogue Length = 378

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 362 KECFEVPPRVVKLASERMVFPLSLKHANNYVSKR---VVLIGDAAHTVHPLAGQGVNLGF 418
           KE        V LA+   +FPL       + SKR   +  IGDAAH   P AGQGVN G 
Sbjct: 265 KELIHTTLSFVGLATR--IFPLEKP----WKSKRPLPITXIGDAAHLXPPFAGQGVNSGL 318
Query: 419 GDASTLSRIIAEG 431
            DA  LS  +A+G
Sbjct: 319 VDALILSDNLADG 331

>pdb|2XYO|A Chain A, Structural Basis For A New Tetracycline Resistance Mechanism Relying On The Tetx Monooxygenase Length = 399

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 362 KECFEVPPRVVKLASERMVFPLSLKHANNYVSKR---VVLIGDAAHTVHPLAGQGVNLGF 418
           KE        V LA+   +FPL       + SKR   +  IGDAAH   P AGQGVN G 
Sbjct: 286 KELIHTTLSFVGLATR--IFPLEKP----WKSKRPLPITXIGDAAHLXPPFAGQGVNSGL 339
Query: 419 GDASTLSRIIAEG 431
            DA  LS  +A+G
Sbjct: 340 VDALILSDNLADG 352

>pdb|2QA1|A Chain A, Crystal Structure Of Pgae, An Aromatic Hydroxylase Involved In Angucycline Biosynthesis Length = 500

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 84/222 (37%), Gaps = 45/222 (20%)
Query: 234 SLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIAL 293
           +L A  +VG DGG+S VR+ AGF   G + +    +  ++  +         LP G + +
Sbjct: 151 TLRAAYLVGCDGGRSSVRKAAGFDFPGTAATMEMYLADIKGVELQPRMIGETLPGGMVMV 210
Query: 294 LPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMF-SW 352
            P+    + I+                           + G  P  +       ++  +W
Sbjct: 211 GPLPGGITRII-------------------------VCERGTPPQRRETPPSWHEVADAW 245
Query: 353 FRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQ 412
            R    L+  +     P  V        F  + +    Y   RV+L GD+AH   P  GQ
Sbjct: 246 KR----LTGDDIAHAEPVWVS------AFGNATRQVTEYRRGRVILAGDSAHIHLPAGGQ 295
Query: 413 GVNLGFGDASTLSRIIAEGIAVGADI-GEAS--LLKKYEAER 451
           G+N    DA  L      G  +GA + G A+  LL  Y +ER
Sbjct: 296 GMNTSIQDAVNL------GWKLGAVVNGTATEELLDSYHSER 331

>pdb|1BGN|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116 Replaced By Ser (C116s) And Arg 269 Replaced By Thr (R269t), In Complex With Fad And 4-Hydroxybenzoic Acid Length = 394

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 74/175 (42%), Gaps = 18/175 (10%)
Query: 277 ENYCAWQRFLPAGPIALLPIGDNFSN-IVWTMNPKDASDCKSMNEDDFVKILNHALDYGY 335
           E    ++R  P G + LL      S+ +++  +P+  + C   +          +  Y  
Sbjct: 172 ERLKVFERVYPFGWLGLLADTPPVSHELIYANHPRGFALCSQRSA-------TRSRYYVQ 224
Query: 336 GPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLAS-ERMVFPLSLKHANNYVSK 394
            P  + +   S + F W    A L A    EV  ++V   S E+ + PL+          
Sbjct: 225 VPLTEKVEDWSDERF-WTELKARLPA----EVAEKLVTGPSLEKSIAPLTSFVVEPMQHG 279
Query: 395 RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA 449
           R+ L GDAAH V P   +G+NL   D STL R++ +        G   LL++Y A
Sbjct: 280 RLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYRE----GRGELLERYSA 330

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	515
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	1e-110
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	5e-29
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	1e-26
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	3e-04
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	2e-26
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	5e-04
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	4e-24
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	6e-22
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	1e-20
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	8e-04
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	4e-20
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	1e-04
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	4e-20
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	7e-19
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	2e-18
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	1e-04
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	4e-18
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	2e-17
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	7e-15
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	5e-14
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	8e-14
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	1e-06
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	2e-13
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	2e-11
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	2e-05
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	2e-07
3atr_A	453	Conserved archaeal protein; saturating double bond	2e-07
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	2e-07
3dme_A	369	Conserved exported protein; structural genomics, P	2e-04
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	4e-04
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	5e-04
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	6e-04
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	9e-04

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Length = 399

 Score =  332 bits (854), Expect = e-110
 Identities = 81/463 (17%), Positives = 150/463 (32%), Gaps = 70/463 (15%)

Query: 52  NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVS 111
            D+  DV + G G+ G  LA  L      +   V +++              +       
Sbjct: 3   TDNHIDVLINGCGIGGAMLAYLLGR----QGHRVVVVEQAR----------RERAINGAD 48

Query: 112 TVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENK 171
            + PA I   +  G    V +       +++V+   G     +N   V+      ++  +
Sbjct: 49  LLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYH-DGELLRYFNYSSVDARGYFILMPCE 107

Query: 172 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD 231
            L   +L  +      + ++ +R+ ++                         + ++ L+D
Sbjct: 108 SLRRLVLEKIDGEATVEMLFETRIEAVQRDER------------------HAIDQVRLND 149

Query: 232 GTSLYAKLVVGADGGKSRVRE-LAGFKTTGWSYSQNAIICTVEHNKE-NYCAWQRFLPAG 289
           G  L  ++VVGADG  S VR  L         Y    ++ T                  G
Sbjct: 150 GRVLRPRVVVGADGIASYVRRRLLDIDVERRPYPSPMLVGTFALAPCVAERNRLYVDSQG 209

Query: 290 PIA-LLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVD 348
            +A   PIG + + +V +   ++A +  +    + ++                       
Sbjct: 210 GLAYFYPIGFDRARLVVSFPREEARELMADTRGESLRRRLQRF----------------- 252

Query: 349 MFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHP 408
                         +        V   S     P+   + + Y +  V ++GDA H VHP
Sbjct: 253 ------------VGDESAEAIAAVTGTSRFKGIPIGYLNLDRYWADNVAMLGDAIHNVHP 300

Query: 409 LAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKA 468
           + GQG+NL   DAS L+  +   +     +     L  Y+AER P N  +++       +
Sbjct: 301 ITGQGMNLAIEDASALADALDLALRDACALE--DALAGYQAERFPVNQAIVSYGHALATS 358

Query: 469 YSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQRLPLPL 511
                     +   A  G+           SY     R P PL
Sbjct: 359 LEDR-QRFAGVFDTALQGSSRTPEALGGERSYQPV--RSPAPL 398

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* Length = 665

 Score =  120 bits (301), Expect = 5e-29
 Identities = 77/450 (17%), Positives = 131/450 (29%), Gaps = 89/450 (19%)

Query: 50  TNNDDQYDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNP-------ALG------ 95
             ++   DV +VG G  G+  A  L+     K  L V IID          A G      
Sbjct: 3   KYSESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTL 62

Query: 96  --------------------KSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH 135
                                      ++    R +   P T+            Q    
Sbjct: 63  ESLKNLGLADKILSEANDMSTIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIE 122

Query: 136 AYF-DKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSR 194
               D +     T +   +        EI     E+   +   ++    +E + T     
Sbjct: 123 RRILDSIAEISDTRIKV-ERPLIPEKMEIDSSKAEDPEAYPVTMTLRYMSEDESTPLQFG 181

Query: 195 LTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELA 254
             +   L  S+  + +   +   L         +  +  +++ K V+G DGG S VR   
Sbjct: 182 HKTENGLFRSNLQTQEEEDANYRLPEGK-----EAGEIETVHCKYVIGCDGGHSWVRRTL 236

Query: 255 GFKTTGWSYSQNAIICTVEHNKE-----NYCAWQRFLPAGPIALLPIGDNFSNIVWTMNP 309
           GF+  G        +             + CA      +G I ++P  +N       +  
Sbjct: 237 GFEMIGEQTDYIWGVLDAVPASNFPDIRSRCAIHSA-ESGSIMIIPRENNLVRFYVQLQA 295

Query: 310 KD----ASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECF 365
           +       D      +  +             HP +     +D F+ +            
Sbjct: 296 RAEKGGRVDRTKFTPEVVIANAKKIF------HPYTFDVQQLDWFTAYH----------- 338

Query: 366 EVPPRVVKLASERMVFPLSLKHANNY-VSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTL 424
                      +R+           +   +RV + GDA HT  P AGQG+N    D   L
Sbjct: 339 ---------IGQRV--------TEKFSKDERVFIAGDACHTHSPKAGQGMNTSMMDTYNL 381

Query: 425 SRIIAEGIAVGADIGEASLLKKYEAERKPA 454
              +   +   A      +LK YE ER+P 
Sbjct: 382 GWKLGLVLTGRAK---RDILKTYEEERQPF 408

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} Length = 499

 Score =  112 bits (281), Expect = 1e-26
 Identities = 64/297 (21%), Positives = 93/297 (31%), Gaps = 52/297 (17%)

Query: 225 AKLDLSDGT-SLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQ 283
            +++  DG  SL  + VVG DGG+S VR+ AGF   G S S+   +  +   +       
Sbjct: 142 VEVEGPDGPRSLTTRYVVGCDGGRSTVRKAAGFDFPGTSASREMFLADIRGCEITPRPIG 201

Query: 284 RFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKS-MNEDDFVKILNHALDYGYGPHPKSI 342
             +P G +   P+GD    I+       A          +                    
Sbjct: 202 ETVPLGMVMSAPLGDGVDRIIVCERGAPARRRTGPPPYQEVAAAWQRLTGQDISHG---- 257

Query: 343 SSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDA 402
                   S F                        R          + Y   RV+L GD+
Sbjct: 258 ---EPVWVSAFG--------------------DPARQ--------VSAYRRGRVLLAGDS 286

Query: 403 AHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKP--ANIVMMA 460
           AH   P  GQG+N+   D+  L   +A   AV +    A LL  Y  ER P    ++M  
Sbjct: 287 AHVHLPAGGQGMNVSVQDSVNLGWKLA---AVVSGRAPAGLLDTYHEERHPVGRRLLMNT 343

Query: 461 VLDGFQKAYSVDFGPLN--ILRAAAFHGAQY-----ISPLKRNIISYASGEQRLPLP 510
              G       +  PL   +     +          +S L    I Y       PL 
Sbjct: 344 QAQGMLFLSGDEMQPLRDVLSELIRYDEVSRHLAGMVSGLD---IRYEVDGGDHPLL 397

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} Length = 499

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 9/30 (30%), Positives = 12/30 (40%)

Query: 46 KQSFTNNDDQYDVAVVGGGMVGMALACSLA 75
               ++     V VVG G  G+ LA  L 
Sbjct: 3  HHHHHHHRSDASVIVVGAGPAGLMLAGELR 32

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} Length = 500

 Score =  111 bits (280), Expect = 2e-26
 Identities = 57/297 (19%), Positives = 94/297 (31%), Gaps = 52/297 (17%)

Query: 225 AKLDLSDGT-SLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQ 283
            ++   +G  +L A  +VG DGG+S VR+ AGF   G + +    +  ++  +       
Sbjct: 141 VEVRGPEGKHTLRAAYLVGCDGGRSSVRKAAGFDFPGTAATMEMYLADIKGVELQPRMIG 200

Query: 284 RFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKS-MNEDDFVKILNHALDYGYGPHPKSI 342
             LP G + + P+    + I+           ++  +  +                    
Sbjct: 201 ETLPGGMVMVGPLPGGITRIIVCERGTPPQRRETPPSWHEVADAWKRLTGDDIAHA---- 256

Query: 343 SSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDA 402
                   S F                      + R            Y   RV+L GD+
Sbjct: 257 ---EPVWVSAFG--------------------NATRQ--------VTEYRRGRVILAGDS 285

Query: 403 AHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKP--ANIV--- 457
           AH   P  GQG+N    DA  L   +    AV        LL  Y +ER      ++   
Sbjct: 286 AHIHLPAGGQGMNTSIQDAVNLGWKLG---AVVNGTATEELLDSYHSERHAVGKRLLMNT 342

Query: 458 ----MMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQRLPLP 510
               ++ +     +        L      A H A  +S L+   I+Y  G    PL 
Sbjct: 343 QAQGLLFLSGPEVQPLRDVLTELIQYGEVARHLAGMVSGLE---ITYDVGTGSHPLL 396

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} Length = 500

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 10/30 (33%), Positives = 12/30 (40%)

Query: 46 KQSFTNNDDQYDVAVVGGGMVGMALACSLA 75
               ++     V VVG G  GM LA  L 
Sbjct: 2  HHHHHHHRSDAAVIVVGAGPAGMMLAGELR 31

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} Length = 570

 Score =  105 bits (263), Expect = 4e-24
 Identities = 81/432 (18%), Positives = 119/432 (27%), Gaps = 99/432 (22%)

Query: 38  QPSSESEVKQSFTNNDDQYDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPALGK 96
            P        +  +     DV VVGGG VG+ LA       L    +   +++       
Sbjct: 32  DPGRRMMHNSNADDAALTTDVVVVGGGPVGLMLAGE-----LRAGGVGALVLEKLVEPV- 85

Query: 97  SNFIKKEDPPDPRVSTVTPATISFF------KEIGAWQYVQQHRHAYFDKMQVWDYTGLG 150
                       R   +   T+                 V +         Q  D+  + 
Sbjct: 86  ---------GHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGIFTQGLDFGLVD 136

Query: 151 YTKYNARDVNKEILGC---VVENKVLHSSLLSCMQNTEFQKTI-YPSRLTSMALLPSSSS 206
            T++                 E  +L           E    I     +T          
Sbjct: 137 -TRHPY------TGLVPQSRTE-ALLAEHA------REAGAEIPRGHEVTR--------- 173

Query: 207 ISVDSTPSATTLFTKGHLAKLDLSDGT-SLYAKLVVGADGGKSRVRELAGFKTTGWSYSQ 265
             +     A           +    G   + A+  VG DGG+S VR LA  +  G   + 
Sbjct: 174 --LRQDAEAVE-------VTVAGPSGPYPVRARYGVGCDGGRSTVRRLAADRFPGTEATV 224

Query: 266 NAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKD---ASDCKSMNEDD 322
            A+I  V   +          P G + L    +      W+ +      A+D   +  +D
Sbjct: 225 RALIGYVTTPEREVPRRWERTPDGILVLAFPPEGGLGPGWSSSSTGHSPAADEGPVTLED 284

Query: 323 FVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFP 382
               +                   V   S F                      + R    
Sbjct: 285 LGAAVARVRGTPLTLTEP------VSWLSRFG--------------------DASRQ--- 315

Query: 383 LSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEAS 442
                A  Y S RV+L GDAAH   P+ GQG+N G  DA  L   +A   A     G   
Sbjct: 316 -----AKRYRSGRVLLAGDAAHVHFPIGGQGLNTGLQDAVNLGWKLA---ARVRGWGSEE 367

Query: 443 LLKKYEAERKPA 454
           LL  Y  ER P 
Sbjct: 368 LLDTYHDERHPV 379

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Length = 397

 Score = 97.0 bits (242), Expect = 6e-22
 Identities = 65/427 (15%), Positives = 111/427 (25%), Gaps = 113/427 (26%)

Query: 58  VAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPAT 117
           +AVVGG + G+  A  L        + V + + +P                         
Sbjct: 8   IAVVGGSISGLTAALMLRD----AGVDVDVYERSP------------------------- 38

Query: 118 ISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLG-------------YTKYNARDVNKEIL 164
                  G    +          +      G+                      V     
Sbjct: 39  -QPLSGFGTG--IVVQPEL----VHYLLEQGVELDSISVPSSSMEYVDALTGERVGSVPA 91

Query: 165 GCVVEN-KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGH 223
                +   ++  L                         S   + +        +     
Sbjct: 92  DWRFTSYDSIYGGLY--------------ELFGPERYHTSKCLVGLSQDSETVQMRF--- 134

Query: 224 LAKLDLSDGTSLYAKLVVGADGGKSRVRE-LAGFKTTGWSYSQNAIICTVEHNKENYCAW 282
                 SDGT   A  V+GADGG S VR+ L G + T   Y+              Y  W
Sbjct: 135 ------SDGTKAEANWVIGADGGASVVRKRLLGIEPT---YA-------------GYVTW 172

Query: 283 QRFL-PAGPIALLPIGDNFSNIVWTMNPK-----------DASDCKSMNEDDFVKILNHA 330
            R +   G +A            + +              + ++   +N   +  +    
Sbjct: 173 -RGVLQPGEVADDVWNYFNDKFTYGLLDDGHLIAYPIPGRENAESPRLNFQWYWNVAEGP 231

Query: 331 LDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFE-VPPRVVKL---ASERMVFPLSLK 386
                    + I   +    +              E +      L   AS   V  ++  
Sbjct: 232 DLDELMTDVRGIRLPTSVHNNSLNPHNLRQFHSKGESLFKPFRDLVLNASSPFVTVVADA 291

Query: 387 HANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKK 446
             +  V  RV+LIGDAA T  P A  G      DA TL+ +  +      D+  +  L+ 
Sbjct: 292 TVDRMVHGRVLLIGDAAVTPRPHAAAGGAKASDDARTLAEVFTK----NHDLRGS--LQS 345

Query: 447 YEAERKP 453
           +E  +  
Sbjct: 346 WETRQLQ 352

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* Length = 639

 Score = 94.2 bits (234), Expect = 1e-20
 Identities = 45/241 (18%), Positives = 81/241 (33%), Gaps = 36/241 (14%)

Query: 223 HLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKE----- 277
                      ++ A+ VVG DG +S VR   G +  G S +Q   +  V    +     
Sbjct: 186 RCDAAHAGQIETVQARYVVGCDGARSNVRRAIGRQLVGDSANQAWGVMDVLAVTDFPDVR 245

Query: 278 NYCAWQRFLPAGPIALLPIGDNFSNIVW----TMNPKDASDCKSMNEDDFVKILNHALDY 333
              A Q     G + ++P         +     ++  +    +++  +  +      L  
Sbjct: 246 YKVAIQS--EQGNVLIIPREGGHLVRFYVEMDKLDADERVASRNITVEQLIATAQRVL-- 301

Query: 334 GYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVS 393
               HP  +   +V  +S +             +  R+      +    +      +   
Sbjct: 302 ----HPYKLEVKNVPWWSVYE------------IGQRIC----AKYDDVVDAVATPDSPL 341

Query: 394 KRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKP 453
            RV + GDA HT  P AGQG+N    D+  L   +A  +          LL  Y +ER+ 
Sbjct: 342 PRVFIAGDACHTHSPKAGQGMNFSMQDSFNLGWKLAAVLRKQCA---PELLHTYSSERQV 398

Query: 454 A 454
            
Sbjct: 399 V 399

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* Length = 639

 Score = 41.1 bits (96), Expect = 8e-04
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 3/41 (7%)

Query: 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93
            Q DV +VG G  G+ LA  LA+ P    +   I++    
Sbjct: 30 PSQVDVLIVGCGPAGLTLAAQLAAFP---DIRTCIVEQKEG 67

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} Length = 535

 Score = 92.4 bits (230), Expect = 4e-20
 Identities = 50/239 (20%), Positives = 72/239 (30%), Gaps = 48/239 (20%)

Query: 225 AKLDLSDGT-SLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVE--------HN 275
           A+L   DG   L A  +VGADG +S VRE  G    G     + +    +          
Sbjct: 159 ARLAGPDGEYDLRAGYLVGADGNRSLVRESLGIGRYGHGTLTHMVGVIFDADLSGIMEPG 218

Query: 276 KENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGY 335
              +         G        D  + +    +P +    +       V+++  ALD   
Sbjct: 219 TTGWYYLHHPEFKGTFGPTDRPDRHT-LFVEYDPDEGERPEDFTPQRCVELIGLALDAPE 277

Query: 336 GPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKR 395
                      +     +                      + R+        A  +   R
Sbjct: 278 VKP-------ELVDIQGWE--------------------MAARI--------AERWREGR 302

Query: 396 VVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPA 454
           V L GDAA    P  G   N    D   L+  +A   AV      A LL  YE ERK A
Sbjct: 303 VFLAGDAAKVTPPTGGMSGNAAVADGFDLAWKLA---AVLQGQAGAGLLDTYEDERKVA 358

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} Length = 535

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 16/75 (21%)

Query: 52  NDDQYDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPALGKSNFIKKEDPPDPRV 110
           ND + DV VVG G+ G++ A  LA     +  + V +++  P L           P PR 
Sbjct: 2   NDHEVDVLVVGAGLGGLSTAMFLA-----RQGVRVLVVERRPGL----------SPYPRA 46

Query: 111 STVTPATISFFKEIG 125
           +   P T+   +  G
Sbjct: 47  AGQNPRTMELLRIGG 61

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Length = 398

 Score = 91.3 bits (227), Expect = 4e-20
 Identities = 51/262 (19%), Positives = 81/262 (30%), Gaps = 39/262 (14%)

Query: 225 AKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQR 284
             L   +  S  A LV+ A+GG S+VR+     T         I   +   + N   + +
Sbjct: 159 WTLTFENKPSETADLVILANGGMSKVRKFV-TDTEVEETGTFNIQADIHQPEINCPGFFQ 217

Query: 285 FLPAGP---------IALLPIGDN-FSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYG 334
                          +   P  +      +    P +  +   ++  +   +++  L   
Sbjct: 218 LCNGNRLMASHQGNLLFANPNNNGALHFGISFKTPDEWKNQTQVDFQNRNSVVDFLLKE- 276

Query: 335 YGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSK 394
                             F        KE        V LA+         K        
Sbjct: 277 ------------------FSDWDER-YKELIHTTLSFVGLATRIFPLEKPWKS---KRPL 314

Query: 395 RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKP- 453
            + +IGDAAH + P AGQGVN G  DA  LS  +A+       I EA  +K YE +    
Sbjct: 315 PITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLAD--GKFNSIEEA--VKNYEQQMFIY 370

Query: 454 ANIVMMAVLDGFQKAYSVDFGP 475
                        + +  DF  
Sbjct: 371 GKEAQEESTQNEIEMFKPDFTF 392

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591

 Score = 88.9 bits (220), Expect = 7e-19
 Identities = 67/450 (14%), Positives = 131/450 (29%), Gaps = 88/450 (19%)

Query: 33  SSNSGQPSSESEVKQSFTNNDDQYDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSN 91
           SS+     S   V +   ++  +  VA++GGG  G     +L      K    V I +  
Sbjct: 3   SSHHHHHHSSGLVPRG--SHMTRSKVAIIGGGPAGSVAGLTLH-----KLGHDVTIYE-- 53

Query: 92  PALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGY 151
               +S F     P      ++ P T+S    +G  + +    +    K       G   
Sbjct: 54  ----RSAF-----PRYRVGESLLPGTMSILNRLGLQEKIDAQNYVK--KPSATFLWGQDQ 102

Query: 152 TKYNARDVNKEILGC------VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSS 205
             +       ++          V+ +     LL   ++         + +T + L     
Sbjct: 103 APWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGIT-VHEETPVTDVDLSDPDR 161

Query: 206 SISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTG----- 260
            +        +                 ++ +  V+ A G    +    G +        
Sbjct: 162 VVLTVRRGGESV----------------TVESDFVIDAGGSGGPISRKLGVRQYDEFYRN 205

Query: 261 ---WSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKS 317
              WSY +       E + +    +      G + ++PI D+  ++   ++   +++ + 
Sbjct: 206 FAVWSYFKLK--DPFEGDLKGT-TYSITFEDGWVWMIPIKDDLYSVGLVVDRSKSAEVRE 262

Query: 318 MNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASE 377
              D F    +  L                       G A            R+V+    
Sbjct: 263 QGADAF---YSSTLA-------------KCAKAMDILGGAEQVD------EVRIVQ---- 296

Query: 378 RMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGAD 437
                 S      + + R  L GDAA    PL  QGV+L    A + +  I      G +
Sbjct: 297 ----DWSY-DTEVFSADRFFLCGDAACFTDPLFSQGVHLASQSAVSAAAAIDRITRHGDE 351

Query: 438 IGEASLLKKYEAERKPANIVMMAVLDGFQK 467
             + ++   Y    + A       L  F  
Sbjct: 352 --KDAVHAWYNRTYREAYEQYHQFLASFYT 379

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* Length = 549

 Score = 87.5 bits (217), Expect = 2e-18
 Identities = 56/280 (20%), Positives = 87/280 (31%), Gaps = 54/280 (19%)

Query: 237 AKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVE-----HNKENYCAWQRFLPAGPI 291
           A+ +V  DG  S  R+  G        +Q                    A   FL     
Sbjct: 185 ARYLVACDGASSPTRKALGIDAPPRHRTQVFRNILFRAPELRSLLGERAALFFFLMLSSS 244

Query: 292 ALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFS 351
              P+       ++ +      D  S +  D  +++  A+ +       S S        
Sbjct: 245 LRFPLRALDGRGLYRLTV--GVDDASKSTMDSFELVRRAVAFDTEIEVLSDSE------- 295

Query: 352 WFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAG 411
            +                      + R+        A+++ + RV L GDAAHT+ P  G
Sbjct: 296 -WH--------------------LTHRV--------ADSFSAGRVFLTGDAAHTLSPSGG 326

Query: 412 QGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKP--------ANIVMMAVLD 463
            G+N G G A+ L   +A   A         LL  YE ER+P        AN+ +   +D
Sbjct: 327 FGMNTGIGSAADLGWKLA---ATLRGWAGPGLLATYEEERRPVAITSLEEANVNLRRTMD 383

Query: 464 GFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASG 503
                   D GP      AA       S  +R   +    
Sbjct: 384 RELPPGLHDDGPRGERIRAAVAEKLERSGARREFDAPGIH 423

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* Length = 549

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 16/96 (16%)

Query: 31  ASSSNSGQPSSESEVKQSFTNNDDQYDVAVVGGGMVGMALACSLASMPLTKH-LSVAIID 89
            SS +    SS    + S  N   + DV ++GGG VGMALA  LA        +   +++
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMNAPIETDVLILGGGPVGMALALDLAH-----RQVGHLVVE 56

Query: 90  SNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIG 125
                             PRV T+ P ++  F+  G
Sbjct: 57  QTDGT----------ITHPRVGTIGPRSMELFRRWG 82

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* Length = 379

 Score = 85.4 bits (212), Expect = 4e-18
 Identities = 50/265 (18%), Positives = 87/265 (32%), Gaps = 71/265 (26%)

Query: 203 SSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKT---- 258
           +S +++ D     T            L  G  L A L+VGADG  S+VR+  GFK     
Sbjct: 127 NSEAVAADPVGRLT------------LQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWV 174

Query: 259 TGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSM 318
           +                       +  +P     L     + +  +W   P+        
Sbjct: 175 SK------------------DGLIRLIVPRMKKELGHGEWDNTIDMWNFWPRVQ------ 210

Query: 319 NEDDFVK--ILNHALDYGYGPHPKSISSGSV------DMFSWFRGDATLSAKECFEVPPR 370
                +     N    Y     P +   GS            F             + P 
Sbjct: 211 ----RILYSPCNENELYLGLMAPAADPRGSSVPIDLEVWVEMFPF-----------LEPC 255

Query: 371 VVKLASER-MVFPL-SLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRII 428
           +++ A  +   +        +++   +V L+GDAAH + P   QG      +A +LS+ +
Sbjct: 256 LIEAAKLKTARYDKYETTKLDSWTRGKVALVGDAAHAMCPALAQGAGCAMVNAFSLSQDL 315

Query: 429 AEGIAVGADIGEASLLKKYEAERKP 453
            E    G+ + +A  L  +E   +P
Sbjct: 316 EE----GSSVEDA--LVAWETRIRP 334

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... Length = 394

 Score = 83.2 bits (206), Expect = 2e-17
 Identities = 40/229 (17%), Positives = 64/229 (27%), Gaps = 42/229 (18%)

Query: 230 SDGTS--LYAKLVVGADGGKSRVRELAGFKTTGW---SYSQNAIICTVEHNKENYCAWQR 284
            DG    L    + G DG     R+    +        Y    +    +    ++     
Sbjct: 143 RDGERLRLDCDYIAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADTPPVSHELIYA 202

Query: 285 FLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISS 344
             P G           S   + +    +   +  +++ F   L   L             
Sbjct: 203 NHPRGFALCSQRSATRS--QYYVQVPLSEKVEDWSDERFWTELKARLPSEVAEKLV---- 256

Query: 345 GSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAH 404
                                  P        E+ + PL           R+ L GDAAH
Sbjct: 257 ---------------------TGPSL------EKSIAPLRSFVVEPMQHGRLFLAGDAAH 289

Query: 405 TVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKP 453
            V P   +G+NL   D STL R++ +    G       LL++Y A    
Sbjct: 290 IVPPTGAKGLNLAASDVSTLYRLLLKAYREGRG----ELLERYSAICLR 334

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Length = 407

 Score = 75.4 bits (186), Expect = 7e-15
 Identities = 71/446 (15%), Positives = 142/446 (31%), Gaps = 103/446 (23%)

Query: 57  DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVS---TV 113
              V+G G+ G++ A +L        +   + ++   +               V    +V
Sbjct: 25  KAIVIGAGIGGLSAAVALKQ----SGIDCDVYEAVKEIK-------------PVGAAISV 67

Query: 114 TPATISFFKEIGAWQYVQQHRHAYFDKMQVWDY-TGLGYTKYNARDVNKEILG--CVVEN 170
            P  +     +G    ++        +M   D+ +G   T+++   + +      C V  
Sbjct: 68  WPNGVKCMAHLGMGDIMET-FGGPLRRMAYRDFRSGENMTQFSLAPLIERTGSRPCPVSR 126

Query: 171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS 230
             L   +L                    ++         +      T++          +
Sbjct: 127 AELQREML--------------DYWGRDSVQFGKRVTRCEEDADGVTVW---------FT 163

Query: 231 DGTSLYAKLVVGADGGKSRVRE-LAGFKT----TGWS-YSQNAIICTVEHNKENYCAWQR 284
           DG+S    L++ ADG  S +R  + GF       G+  +  N ++  ++        W  
Sbjct: 164 DGSSASGDLLIAADGSHSALRPWVLGFTPQRRYAGYVNW--NGLV-EIDEALAPGDQWTT 220

Query: 285 FLPAGP---IALLPIGDN-FSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPK 340
           F+  G    ++L+P+    F        P   ++ +     D  +        G+ P  +
Sbjct: 221 FV--GEGKQVSLMPVSAGRFYFFFDVPLPAGLAEDRDTLRADLSRYFA-----GWAPPVQ 273

Query: 341 SISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIG 400
            + + ++D  +  R +         ++ P                   +  V  RV L+G
Sbjct: 274 KLIA-ALDPQTTNRIEI-------HDIEP------------------FSRLVRGRVALLG 307

Query: 401 DAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKP--ANIVM 458
           DA H+  P  GQG      DA  L  +  +      DI  A  L++YEA+R     ++V+
Sbjct: 308 DAGHSTTPDIGQGGCAAMEDAVVLGAVFRQ----TRDIAAA--LREYEAQRCDRVRDLVL 361

Query: 459 MAVLDGFQKAYSVDFGPLNILRAAAF 484
            A               L        
Sbjct: 362 KARKRC--DITHGKDMQLTEAWYQEL 385

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} Length = 381

 Score = 72.5 bits (177), Expect = 5e-14
 Identities = 31/233 (13%), Positives = 61/233 (26%), Gaps = 47/233 (20%)

Query: 228 DLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAII-CTVEHNKENYCAWQRFL 286
           +  +       LVV A+G   +             Y +N  I        +      R  
Sbjct: 123 EHGELPLADYDLVVLANGVNHKTAHFTEALVPQVDYGRNKYIWYGTSQLFDQMNLVFRTH 182

Query: 287 PAGPIAL--LPIGDNFSNIVWTMNPK--DASDCKSMNEDDFVKILNHALDYGYGPHPKSI 342
                        D  S  +   + +    +    M+E+   + +               
Sbjct: 183 GKDIFIAHAYKYSDTMSTFIVECSEETYARARLGEMSEEASAEYV--------------- 227

Query: 343 SSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKH--ANNYVSKRVVLIG 400
                     F+ +                 L S+  +   +      +     ++VL+G
Sbjct: 228 -------AKVFQAE------------LGGHGLVSQPGLGWRNFMTLSHDRCHDGKLVLLG 268

Query: 401 DAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKP 453
           DA  + H   G G  +    A  L + +         +  A  LK++E    P
Sbjct: 269 DALQSGHFSIGHGTTMAVVVAQLLVKALCT----EDGVPAA--LKRFEERALP 315

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 72.5 bits (178), Expect = 8e-14
 Identities = 22/230 (9%), Positives = 62/230 (26%), Gaps = 44/230 (19%)

Query: 231 DGTSLYAKLVVGADGGKSRVRELAGFKTTG--------WSYSQNAIICTVEHNKENYCAW 282
           +   + A+ ++ A G    +  + G             +++ ++         + N    
Sbjct: 149 NKREIEARFIIDASGYGRVIPRMFGLDKPSGFESRRTLFTHIKDVKRPVAAEMEGNRITA 208

Query: 283 QRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSI 342
               P   I ++P  +  +++ +   P    +     E+    ++ +             
Sbjct: 209 VVHKPKVWIWVIPFSNGNTSVGFVGEPSYFDEYTGTPEERMRAMIAN--------EG--- 257

Query: 343 SSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDA 402
                   +                 PR ++          ++  A+       VL G+A
Sbjct: 258 ------HIAERFKSEEFLF------EPRTIE--------GYAI-SASKLYGDGFVLTGNA 296

Query: 403 AHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERK 452
              + P+   G        S   ++  + +       E +  K +     
Sbjct: 297 TEFLDPIFSSGATFAMESGSKGGKLAVQFLKG----EEVNWEKDFVEHMM 342

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 23/88 (26%)

Query: 52  NDDQYDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPALGKSNFIKKEDPPDPRV 110
             ++ DV V+G G  G   A  +      K    V I++      K  F        PR 
Sbjct: 2   QREKVDVLVIGAGPAGTVAASLVN-----KSGFKVKIVE------KQKF--------PRF 42

Query: 111 S---TVTPATISFFKEIGAWQYVQQHRH 135
               ++ P  +    E G    V+    
Sbjct: 43  VIGESLLPRCMEHLDEAGFLDAVKAQGF 70

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* Length = 410

 Score = 71.2 bits (175), Expect = 2e-13
 Identities = 52/290 (17%), Positives = 95/290 (32%), Gaps = 54/290 (18%)

Query: 210 DSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRE-LAGFKTTGWSYSQNAI 268
           +           GH          +L A ++VGADG  S VR  L           Q  +
Sbjct: 137 ERDGRVLIGARDGH------GKPQALGADVLVGADGIHSAVRAHLHP--------DQRPL 182

Query: 269 ICTVEHNKENYCAWQRFL------PAGPIALLPIGDNFSNIVW--TMNPKDASDCKSMNE 320
                        W R +        G   ++   +++S +V         A     +N 
Sbjct: 183 SHG------GITMW-RGVTEFDRFLDGKTMIVANDEHWSRLVAYPISARHAAEGKSLVN- 234

Query: 321 DDFVKILNHALDYGYGPHPKSISSGSV-DMFSWFRG--DATLSAKECFEVPPRVVKLA-S 376
             +V ++  A              G + D+  +F          ++       +++    
Sbjct: 235 --WVCMVPSAAVGQLDNEADWNRDGRLEDVLPFFADWDLGWFDIRDLLTRNQLILQYPMV 292

Query: 377 ERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGA 436
           +R   P       ++   R+ L+GDAAH ++P+   G +    D   L+  +A      A
Sbjct: 293 DRDPLP-------HWGRGRITLLGDAAHLMYPMGANGASQAILDGIELAAALAR----NA 341

Query: 437 DIGEASLLKKYEAERKP--ANIVMMAVLDGFQKAYSVDFGPLNILRAAAF 484
           D+  A  L++YE  R+P    I++        K            ++AA 
Sbjct: 342 DVAAA--LREYEEARRPTANKIILANRERE--KEEWAAASRPKTEKSAAL 387

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512

 Score = 65.3 bits (159), Expect = 2e-11
 Identities = 42/297 (14%), Positives = 95/297 (31%), Gaps = 42/297 (14%)

Query: 221 KGHLAKLDLSDGT--SLYAKLVVGADGGKSRVRELAGFKTTG--------WSYSQNAIIC 270
           +    +   ++G     +A+ +V A G ++RV +  G +           + Y +N    
Sbjct: 143 RAVGVRYRNTEGVELMAHARFIVDASGNRTRVSQAVGERVYSRFFQNVALYGYFENGK-- 200

Query: 271 TVEHNKENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHA 330
            +   ++           G    +P+ D  +++   ++ + A   K  +E   ++ ++  
Sbjct: 201 RLPAPRQGN-ILSAAFQDGWFWYIPLSDTLTSVGAVVSREAAEAIKDGHEAALLRYIDRC 259

Query: 331 LDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANN 390
                 P               +   AT      +    R+ K       +         
Sbjct: 260 ------PI-----------IKEYLAPATRVTTGDYG-EIRIRK------DYSYCNTS--- 292

Query: 391 YVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAE 450
           +    + L+GDAA  V P+   GV+L    A  ++R I   +A   ++ E    +++E  
Sbjct: 293 FWKNGMALVGDAACFVDPVFSSGVHLATYSALLVARAINTCLA--GEMSEQRCFEEFERR 350

Query: 451 RKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQRL 507
            +         L  F              R       +      R I   ++ ++ +
Sbjct: 351 YRREYGNFYQFLVAFYDMNQDTDSYFWSARKIINTEERANEAFVRLIAGRSNLDEPV 407

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 20/89 (22%)

Query: 50  TNNDDQYDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPALGKSNFIKKEDPPDP 108
           +   + +D+ V+GGG  G  LA  +A          V +++            +E  P  
Sbjct: 2   STRPEVFDLIVIGGGPGGSTLASFVA-----MRGHRVLLLE------------REAFPRH 44

Query: 109 RV--STVTPATISFFKEIGAWQYVQQHRH 135
           ++  S +          +G    +++   
Sbjct: 45  QIGESLLPATVHGICAMLGLTDEMKRAGF 73

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} Length = 430

 Score = 52.6 bits (125), Expect = 2e-07
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 394 KRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKP 453
           K ++ +GD   TV P+ GQG N+    A  L   I         + +    +  E  R+ 
Sbjct: 308 KTIIGLGDIQATVDPVLGQGANMASYAAWILGEEILA-----HSVYDLRFSEHLERRRQD 362

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 40/252 (15%), Positives = 71/252 (28%), Gaps = 54/252 (21%)

Query: 231 DGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQN--------AIICTVEHNKENYCAW 282
           +  ++Y+K+VV A G     R     +        +         ++ T E  +++    
Sbjct: 145 EELTVYSKVVVEATGYSRSFRSKLPPELPITEDLDDKDADVAYREVLLTKEDIEDHDYLR 204

Query: 283 ----QRFLPAGPIALLPIGDNFSNI-VWTMNPKDASDCKSMNEDDFVKILNHALDYGYGP 337
               Q   P G     P G N  N+ +             M      +     LD     
Sbjct: 205 IFIDQETSPGGYWWYFPKGKNKVNVGLGIQ--------GGMGYPSIHEYYKKYLD----- 251

Query: 338 HPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVV 397
                       ++     + L  K    VP    +     M +              ++
Sbjct: 252 -----------KYAPDVDKSKLLVKGGALVP---TRRPLYTMAWN------------GII 285

Query: 398 LIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIV 457
           +IGD+  TV+P+ G G           ++ I      G D   +  L             
Sbjct: 286 VIGDSGFTVNPVHGGGKGSAMISGYCAAKAILSAFETG-DFSASG-LWDMNICYVNEYGA 343

Query: 458 MMAVLDGFQKAY 469
             A LD F++  
Sbjct: 344 KQASLDIFRRFL 355

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} Length = 369

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 4/42 (9%)

Query: 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95
             D  V+G G+VG+A+A +LA+        V + ++   +G
Sbjct: 3  TDIDCIVIGAGVVGLAIARALAA----GGHEVLVAEAAEGIG 40

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Length = 566

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 7/74 (9%)

Query: 22  SFCSSVAEKASSSNSGQPSSESEVKQSFTNNDDQYDVAVVGGGMVGMALACSLASMPLTK 81
            F  +  +K+      Q   +  +        +   V VVG G  G   + +        
Sbjct: 91  PFSDAKKKKSWDDGWDQDKIQKAIAAGP---SETTQVLVVGAGSAGFNASLAAKK----A 143

Query: 82  HLSVAIIDSNPALG 95
             +V ++D  P  G
Sbjct: 144 GANVILVDKAPFSG 157

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* Length = 510

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 8/75 (10%)

Query: 21 RSFCSSVAEKASSSNSGQPSSESEVKQSFTNNDDQYDVAVVGGGMVGMALACSLASMPLT 80
           S           +   +P S + V +     D + DV V G G+ G+A +   A     
Sbjct: 11 SSGLVPRGSHMVDATPIRPRSATTVTEW----DYEADVVVAGYGIAGVAASIEAAR---- 62

Query: 81 KHLSVAIIDSNPALG 95
              V +++     G
Sbjct: 63 AGADVLVLERTSGWG 77

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Length = 572

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 7/77 (9%)

Query: 19  LQRSFCSSVAEKASSSNSGQPSSESEVKQSFTNNDDQYDVAVVGGGMVGMALACSLASMP 78
               F      K    ++ + + +  +        +  DV ++G G  G+A A S     
Sbjct: 93  FDMPFGGKWERKFVPVDADKAAQDKAIAAGV---KETTDVVIIGSGGAGLAAAVSARD-- 147

Query: 79  LTKHLSVAIIDSNPALG 95
                 V +++  P  G
Sbjct: 148 --AGAKVILLEKEPIPG 162

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* Length = 448

 Score = 40.9 bits (96), Expect = 9e-04
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95
           ++D  VVG G+VG+A A  L         SV ++D+  A G
Sbjct: 22 PRFDYVVVGAGVVGLAAAYYLKVWS---GGSVLVVDAGHAPG 60

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	515
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	100.0
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	100.0
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	100.0
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	100.0
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	100.0
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	100.0
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	100.0
4hb9_A	412	Similarities with probable monooxygenase; flavin,	100.0
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	100.0
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	100.0
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	100.0
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	100.0
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	100.0
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	100.0
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	100.0
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	100.0
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	100.0
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	100.0
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	100.0
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	100.0
3atr_A	453	Conserved archaeal protein; saturating double bond	100.0
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	100.0
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	100.0
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	100.0
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	100.0
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	99.98
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	99.98
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	99.96
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.9
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.86
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.65
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.61
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.59
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.58
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.56
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.54
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.54
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.53
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	99.53
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.53
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.46
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.46
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.43
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.43
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.41
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.41
3dme_A	369	Conserved exported protein; structural genomics, P	99.41
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.4
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.39
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.37
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.37
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	99.36
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	99.36
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.34
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	99.32
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	99.32
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.31
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	99.29
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.28
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.28
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.28
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.27
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.27
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.26
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	99.26
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.25
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	99.25
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.24
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	99.24
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.24
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	99.21
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	99.2
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	99.18
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.17
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.16
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.14
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.13
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	99.13
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	99.13
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.12
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.12
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	99.12
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	99.11
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.11
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.11
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	99.1
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.1
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	99.1
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.08
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	99.07
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.06
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	99.05
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	99.05
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	99.05
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	99.04
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	99.02
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	99.02
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	99.01
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.01
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.98
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.96
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.95
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	98.95
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	98.95
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	98.93
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.92
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.89
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.88
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.86
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	98.86
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	98.85
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.84
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.83
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.83
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.81
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.77
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.76
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.75
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.75
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.73
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.72
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	98.7
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.69
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	98.67
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	98.66
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.65
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.63
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.63
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	98.62
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.62
4dna_A	463	Probable glutathione reductase; structural genomic	98.6
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.6
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.58
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.58
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	98.58
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.56
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.56
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.55
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.54
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	98.54
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.53
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.52
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.52
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.5
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.49
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.49
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.49
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.49
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.48
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.47
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.46
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.46
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.46
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.45
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.45
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.44
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.43
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.43
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.42
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.42
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.41
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.41
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.4
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	98.39
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.38
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.37
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.37
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.36
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.36
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.36
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.35
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.34
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	98.33
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.33
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	98.32
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.31
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.31
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.31
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.3
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.29
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.25
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.24
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.23
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.18
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.16
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.13
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.12
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.12
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.12
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.12
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.1
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.1
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.1
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	98.09
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.09
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.09
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	98.08
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.07
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.06
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.06
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.06
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.05
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.0
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	97.99
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.99
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.99
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.99
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.99
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.98
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	97.98
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.98
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.98
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.98
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.97
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	97.97
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.96
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.95
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	97.95
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	97.94
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.93
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.93
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.92
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.92
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.91
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.89
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.86
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	97.84
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	97.8
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	97.8
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	97.77
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.76
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	97.74
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.74
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	97.74
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	97.74
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	97.73
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.72
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.7
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	97.68
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	97.66
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	97.65
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	97.61
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	97.57
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	97.56
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	97.53
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.53
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	97.51
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.51
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.5
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.48
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	97.47
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.47
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.46
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.44
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	97.44
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	97.43
3r9u_A	315	Thioredoxin reductase; structural genomics, center	97.39
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	97.36
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.35
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	97.3
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.28
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	97.27
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	97.26
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.24
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	97.24
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	97.23
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	97.22
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	97.21
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.19
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	97.18
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.17
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.17
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	97.11
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	97.07
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	97.01
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	97.0
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	96.99
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	96.92
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	96.87
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	96.8
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	96.63
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	96.62
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	96.61
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	96.56
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	96.55
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	96.55
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	96.53
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	96.26
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	95.9
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	95.81
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	95.74
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	95.74
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	95.66
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	95.46
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	95.19
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.18
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	94.87
1id1_A	153	Putative potassium channel protein; RCK domain, E.	94.87
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	94.87
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	94.83
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	94.62
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	94.52
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	94.38
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	94.24
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	94.22
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	94.0
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	93.79
4g65_A	461	TRK system potassium uptake protein TRKA; structur	93.57
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	93.41
4fk1_A	304	Putative thioredoxin reductase; structural genomic	93.34
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	93.34
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	93.26
3c85_A	183	Putative glutathione-regulated potassium-efflux S	93.23
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	92.93
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	92.85
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	92.6
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	92.36
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	92.29
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	92.29
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	92.2
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	92.13
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	92.06
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	92.05
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	92.02
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	92.01
3qha_A	296	Putative oxidoreductase; seattle structural genomi	91.97
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	91.94
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	91.86
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	91.85
3tl2_A	315	Malate dehydrogenase; center for structural genomi	91.84
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	91.84
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	91.76
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	91.72
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	91.64
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	91.49
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	91.49
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	91.42
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	91.29
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	91.27
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	91.26
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	91.23
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	91.23
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	91.14
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	91.13
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	91.02
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	90.8
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	90.79
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	90.71
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	90.7
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	90.67
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	90.52
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	90.49
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	90.49
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	90.35
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	90.24
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	90.17
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	90.15
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	90.15
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	90.14
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	90.14
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	90.11
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	90.06
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	90.01
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	89.98
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	89.88
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	89.74
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	89.7
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	89.65
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	89.61
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	89.55
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	89.53
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	89.47
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	89.46
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	89.42
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	89.14
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	89.13
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	88.95
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	88.83
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	88.82
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	88.78
4ezb_A	317	Uncharacterized conserved protein; structural geno	88.74
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	88.61
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	88.25
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	88.19
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	88.14
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	88.03
4dna_A	463	Probable glutathione reductase; structural genomic	87.97
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	87.97
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	87.97
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	87.96
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	87.85
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	87.65
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	87.57
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	87.5
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	87.39
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	87.38
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	87.36
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	87.35
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	87.26
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	87.24
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	87.22
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	87.19
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	87.18
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	87.14
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	87.01
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	86.93
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	86.92
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	86.91
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	86.91
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	86.83
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	86.83
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	86.75
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	86.74
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	86.71
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	86.68
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	86.54
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	86.51
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	86.48
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	86.38
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	86.26
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	86.18
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	86.05
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	85.97
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	85.97
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	85.94
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	85.89
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	85.81
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	85.78
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	85.78
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	85.77
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	85.71
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	85.65
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	85.51
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	85.45
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	85.39
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	85.34
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	85.32
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	85.23
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	85.23
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	85.06
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	85.0
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	84.95
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	84.83
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	84.65
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	84.53
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	84.44
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	84.44
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	84.28
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	84.25
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	84.23
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	84.21
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	83.73
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	83.57
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	83.52
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	83.46
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	83.44
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	83.42
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	83.4
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	83.38
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	83.3
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	83.29
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	83.25
4g65_A	461	TRK system potassium uptake protein TRKA; structur	83.22
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	83.17
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	83.15
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	83.07
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	83.05
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	83.03
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	82.93
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	82.9
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	82.87
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	82.64
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	82.64
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	82.62
3on5_A	362	BH1974 protein; structural genomics, joint center	82.53
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	82.53
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	82.45
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	82.37
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	82.25
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	82.17
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	81.93
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	81.79
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	81.79
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	81.69
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	81.64
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	81.49
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	81.37
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	81.24
1kjq_A	391	GART 2, phosphoribosylglycinamide formyltransferas	81.21
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	81.15
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	81.14
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	80.98
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	80.97
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	80.84
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	80.81
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	80.8
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	80.78
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	80.64
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	80.4

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=100.00  E-value=1.3e-43  Score=371.39  Aligned_cols=374  Identities=18%  Similarity=0.201  Sum_probs=285.9

Q ss_pred             CCCCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchh
Q 010200           50 TNNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQY  129 (515)
Q Consensus        50 ~~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~  129 (515)
                      ..+++.+||+||||||+||++|+.|++.    |++|+||||.+.+.          ..+++..++++++++|+.+|+++.
T Consensus         6 ~~~~~~~dVlIVGaGpaGl~~A~~La~~----G~~v~vlE~~~~~~----------~~~r~~~l~~~~~~~l~~lGl~~~   71 (500)
T 2qa1_A            6 HHHRSDAAVIVVGAGPAGMMLAGELRLA----GVEVVVLERLVERT----------GESRGLGFTARTMEVFDQRGILPR   71 (500)
T ss_dssp             --CCSBCSEEEECCSHHHHHHHHHHHHT----TCCEEEEESCCC-C----------CCCCSEEECHHHHHHHHTTTCGGG
T ss_pred             CCccCCCCEEEECcCHHHHHHHHHHHHC----CCCEEEEeCCCCCC----------CCCCcceECHHHHHHHHHCCCHHH
Confidence            3455679999999999999999999996    99999999998763          335689999999999999999988


Q ss_pred             hhhhhccccceEEEEeCCCccceeeecccCC-CCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcc
Q 010200          130 VQQHRHAYFDKMQVWDYTGLGYTKYNARDVN-KEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSIS  208 (515)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~  208 (515)
                      +.+. . ...... +.  +   ..+...... ..+..+.+++..+.+.|.+.+.+.| ++|+++++|++++.        
T Consensus        72 ~~~~-~-~~~~~~-~~--~---~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~g-v~v~~~~~v~~i~~--------  134 (500)
T 2qa1_A           72 FGEV-E-TSTQGH-FG--G---LPIDFGVLEGAWQAAKTVPQSVTETHLEQWATGLG-ADIRRGHEVLSLTD--------  134 (500)
T ss_dssp             GCSC-C-BCCEEE-ET--T---EEEEGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTT-CEEEETCEEEEEEE--------
T ss_pred             HHhc-c-cccccc-cc--c---eecccccCCCCCCceeecCHHHHHHHHHHHHHHCC-CEEECCcEEEEEEE--------
Confidence            8765 2 222221 11  1   122222221 2234688999999999999999987 99999999999987        


Q ss_pred             cCCCCCcccccccCCeeEEEcCCCc---EEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCCceEEEEe
Q 010200          209 VDSTPSATTLFTKGHLAKLDLSDGT---SLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRF  285 (515)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~v~~~~g~---~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (515)
                                  +++.+++++.++.   ++++|+||+|||.+|.||+.+|.......+...++.+.+............+
T Consensus       135 ------------~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S~VR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (500)
T 2qa1_A          135 ------------DGAGVTVEVRGPEGKHTLRAAYLVGCDGGRSSVRKAAGFDFPGTAATMEMYLADIKGVELQPRMIGET  202 (500)
T ss_dssp             ------------ETTEEEEEEEETTEEEEEEESEEEECCCTTCHHHHHTTCCCCEECCCCEEEEEEEESCCCCCEEEEEE
T ss_pred             ------------cCCeEEEEEEcCCCCEEEEeCEEEECCCcchHHHHHcCCCcCCCccceEEEEEEEEeCCCCCceEEEE
Confidence                        3456788887764   7999999999999999999999887777777778887777654333344556


Q ss_pred             cCCCcEEEEecCCCceEEEEEcCCCC-hHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCcccccccc
Q 010200          286 LPAGPIALLPIGDNFSNIVWTMNPKD-ASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKEC  364 (515)
Q Consensus       286 ~~~g~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (515)
                      .++++++++|++++.+++++...... .......+.+++.+.+.+.+.....                            
T Consensus       203 ~~~g~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------------------  254 (500)
T 2qa1_A          203 LPGGMVMVGPLPGGITRIIVCERGTPPQRRETPPSWHEVADAWKRLTGDDIA----------------------------  254 (500)
T ss_dssp             ETTEEEEEEEETTTEEEEEEEETTCCC-----CCCHHHHHHHHHHHHSCCCT----------------------------
T ss_pred             CCCcEEEEEEcCCCEEEEEEEcCCCCCccccCCCCHHHHHHHHHHhcCCCCC----------------------------
Confidence            78899999999998877777653322 2223446778888888775541000                            


Q ss_pred             ccCCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHH
Q 010200          365 FEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLL  444 (515)
Q Consensus       365 ~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al  444 (515)
                        +    ... .....|+...+.+++|..|||+|+|||||.++|+.|||+|+||+||.+|+++|...++..   ....+|
T Consensus       255 --~----~~~-~~~~~~~~~~~~a~~~~~grv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~~~g~---~~~~~L  324 (500)
T 2qa1_A          255 --H----AEP-VWVSAFGNATRQVTEYRRGRVILAGDSAHIHLPAGGQGMNTSIQDAVNLGWKLGAVVNGT---ATEELL  324 (500)
T ss_dssp             --T----SEE-EEEEEEECCEEECSCSEETTEEECGGGTEECCCCSSCHHHHHHHHHHHHHHHHHHHHTTS---SCHHHH
T ss_pred             --c----cce-eEEEEeccCcEEccccccCCEEEEEccccCCCCccccchhhhHHHHHHHHHHHHHHHcCC---CChHHH
Confidence              0    000 011236666667888999999999999999999999999999999999999999987532   237899


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhcCCC
Q 010200          445 KKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQR  506 (515)
Q Consensus       445 ~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~~  506 (515)
                      +.|+++|++++..++..++.+..++.. ++....+|+.++.++ ..|.+++.+.+..+|.+.
T Consensus       325 ~~Y~~eR~~~~~~~~~~s~~~~~l~~~-~~~~~~~R~~~~~~~-~~~~~~~~~~~~~~g~~~  384 (500)
T 2qa1_A          325 DSYHSERHAVGKRLLMNTQAQGLLFLS-GPEVQPLRDVLTELI-QYGEVARHLAGMVSGLEI  384 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS-CGGGHHHHHHHHHHH-TSHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHhh-cCHHHHHHHhhhhccCCC
Confidence            999999999999999999999998874 566778999888777 578899999988887653

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=100.00  E-value=1.6e-43  Score=370.64  Aligned_cols=371  Identities=20%  Similarity=0.230  Sum_probs=286.0

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhh
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (515)
                      ...+||+||||||+||++|+.|++.    |++|+||||.+.+.          ..+++..++++++++|+.+|+++.+.+
T Consensus        10 ~~~~dVlIVGaGpaGl~~A~~La~~----G~~v~vlE~~~~~~----------~~~r~~~l~~~~~~~l~~lGl~~~~~~   75 (499)
T 2qa2_A           10 RSDASVIVVGAGPAGLMLAGELRLG----GVDVMVLEQLPQRT----------GESRGLGFTARTMEVFDQRGILPAFGP   75 (499)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHT----TCCEEEEESCSSCC----------CCCCSEEECHHHHHHHHHTTCGGGGCS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHC----CCCEEEEECCCCCC----------CCCceeEECHHHHHHHHHCCCHHHHHh
Confidence            3569999999999999999999996    99999999998763          345689999999999999999988876


Q ss_pred             hhccccceEEEEeCCCccceeeecccCC-CCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCC
Q 010200          133 HRHAYFDKMQVWDYTGLGYTKYNARDVN-KEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDS  211 (515)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~  211 (515)
                      . . ...... +.  +   ..+...... ..+..+.+++..+.+.|.+.+.+.| ++|+++++|++++.           
T Consensus        76 ~-~-~~~~~~-~~--~---~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~g-v~v~~~~~v~~i~~-----------  135 (499)
T 2qa2_A           76 V-E-TSTQGH-FG--G---RPVDFGVLEGAHYGVKAVPQSTTESVLEEWALGRG-AELLRGHTVRALTD-----------  135 (499)
T ss_dssp             C-C-EESEEE-ET--T---EEEEGGGSTTCCCEEEEEEHHHHHHHHHHHHHHTT-CEEEESCEEEEEEE-----------
T ss_pred             c-c-ccccce-ec--c---eecccccCCCCCCceEecCHHHHHHHHHHHHHhCC-CEEEcCCEEEEEEE-----------
Confidence            4 2 222211 11  1   122222222 2234688999999999999999987 99999999999987           


Q ss_pred             CCCcccccccCCeeEEEcCCCc---EEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCCceEEEEecCC
Q 010200          212 TPSATTLFTKGHLAKLDLSDGT---SLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPA  288 (515)
Q Consensus       212 ~~~~~~~~~~~~~~~v~~~~g~---~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (515)
                               +++.+++++.++.   ++++|+||+|||.+|.||+.+|.......+...++.+.+............+.++
T Consensus       136 ---------~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S~VR~~lg~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  206 (499)
T 2qa2_A          136 ---------EGDHVVVEVEGPDGPRSLTTRYVVGCDGGRSTVRKAAGFDFPGTSASREMFLADIRGCEITPRPIGETVPL  206 (499)
T ss_dssp             ---------CSSCEEEEEECSSCEEEEEEEEEEECCCTTCHHHHHTTCCCCEECCCCCEEEEEEESCCCCCEEEEEEETT
T ss_pred             ---------eCCEEEEEEEcCCCcEEEEeCEEEEccCcccHHHHHcCCCCCCCCCccEEEEEEEEECCCCcceEEEECCC
Confidence                     3345778887764   7999999999999999999999887777777777888777654333344556788


Q ss_pred             CcEEEEecCCCceEEEEEcCCCC-hHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccC
Q 010200          289 GPIALLPIGDNFSNIVWTMNPKD-ASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEV  367 (515)
Q Consensus       289 g~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  367 (515)
                      ++++++|++++.+++++...... .......+.+++.+.+.+.+.....                              +
T Consensus       207 g~~~~~P~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------------------------~  256 (499)
T 2qa2_A          207 GMVMSAPLGDGVDRIIVCERGAPARRRTGPPPYQEVAAAWQRLTGQDIS------------------------------H  256 (499)
T ss_dssp             EEEEEEECSSSCEEEEEEETTCCCCCCSSSCCHHHHHHHHHHHHSCCCT------------------------------T
T ss_pred             eEEEEEEcCCCEEEEEEEecCCCCccccCCCCHHHHHHHHHHHhCCCCC------------------------------c
Confidence            99999999988877777653321 1122346778888888775531000                              0


Q ss_pred             CcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHH
Q 010200          368 PPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKY  447 (515)
Q Consensus       368 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y  447 (515)
                          ... .....|++..+.+++|..|||+|+|||||.++|+.|||+|+||+||.+|++.|...++..   ....+|+.|
T Consensus       257 ----~~~-~~~~~~~~~~~~a~~~~~grv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g~---~~~~~L~~Y  328 (499)
T 2qa2_A          257 ----GEP-VWVSAFGDPARQVSAYRRGRVLLAGDSAHVHLPAGGQGMNVSVQDSVNLGWKLAAVVSGR---APAGLLDTY  328 (499)
T ss_dssp             ----CEE-EEEEEECCCEEECSCSEETTEEECGGGTEEECCCSSCHHHHHHHHHHHHHHHHHHHHTTS---SCTHHHHHH
T ss_pred             ----cce-eEEEEEeCCcEEcccccCCCEEEEecccccCCCccccchhhhHHHHHHHHHHHHHHHcCC---CChHHHHHH
Confidence                000 011236666667888999999999999999999999999999999999999999987532   237899999


Q ss_pred             HHHhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhcCCC
Q 010200          448 EAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQR  506 (515)
Q Consensus       448 ~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~~  506 (515)
                      +++|++++..++..++.+..++.. ++....+|+.++.++ ..|.+++.+....+|.+.
T Consensus       329 e~eR~~~~~~~~~~s~~~~~l~~~-~~~~~~~R~~~~~~~-~~~~~~~~~~~~~~~~~~  385 (499)
T 2qa2_A          329 HEERHPVGRRLLMNTQAQGMLFLS-GDEMQPLRDVLSELI-RYDEVSRHLAGMVSGLDI  385 (499)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHC-CGGGHHHHHHHHHHH-TSSHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHhh-cCHHHHHHHHHHHhCCCC
Confidence            999999999999999999998874 567778999888777 578899999888887654

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=100.00  E-value=1.8e-44  Score=382.64  Aligned_cols=376  Identities=21%  Similarity=0.223  Sum_probs=284.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      +++||+||||||+||++|+.|++.    |++|+||||.+.+.          ..+++..++++++++|+.+|+++.+.+.
T Consensus        48 ~~~DVvIVGaG~aGL~~A~~La~~----G~~V~VlEr~~~~~----------~~~r~~~l~~~s~~~l~~lGl~~~l~~~  113 (570)
T 3fmw_A           48 LTTDVVVVGGGPVGLMLAGELRAG----GVGALVLEKLVEPV----------GHDRAGALHIRTVETLDLRGLLDRFLEG  113 (570)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHT----TCCEEEEBSCSSCC----------CSSSCCCBCHHHHHHHHTTTCHHHHTTS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC----CCCEEEEcCCCCCC----------CCceEEEECHHHHHHHHHcCChHHHHhc
Confidence            468999999999999999999996    99999999998763          3455889999999999999999998876


Q ss_pred             hccccceEEEEeCCCccceeeecccCC-CCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCC
Q 010200          134 RHAYFDKMQVWDYTGLGYTKYNARDVN-KEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (515)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~  212 (515)
                      .......  .+.  +.....+...... ....++.+++..+.+.|.+.+.+.| ++|+++++|++++.            
T Consensus       114 ~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~g-v~i~~~~~v~~l~~------------  176 (570)
T 3fmw_A          114 TQVAKGL--PFA--GIFTQGLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAG-AEIPRGHEVTRLRQ------------  176 (570)
T ss_dssp             CCBCSBC--CBT--TBCTTCCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHT-EECCBSCEEEECCB------------
T ss_pred             CcccCCc--eeC--CcccccccccccCCCCCeeEEeCHHHHHHHHHHHHHhCC-CEEEeCCEEEEEEE------------
Confidence            5532211  011  1100012211111 2234577999999999999999887 99999999999976            


Q ss_pred             CCcccccccCCeeEEEc--CCC-cEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCCceEEE-EecCC
Q 010200          213 PSATTLFTKGHLAKLDL--SDG-TSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQ-RFLPA  288 (515)
Q Consensus       213 ~~~~~~~~~~~~~~v~~--~~g-~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  288 (515)
                              +++.++|++  .+| .+++||+||+|||.+|.||+.+|+......+...++.+.+....+. ..+. .+.+.
T Consensus       177 --------~~~~v~v~~~~~~G~~~~~a~~vV~ADG~~S~vR~~lGi~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~  247 (570)
T 3fmw_A          177 --------DAEAVEVTVAGPSGPYPVRARYGVGCDGGRSTVRRLAADRFPGTEATVRALIGYVTTPERE-VPRRWERTPD  247 (570)
T ss_dssp             --------CSSCEEEEEEETTEEEEEEESEEEECSCSSCHHHHHTTCCCCCCCCCEEEEEEECCCCSCS-SCCCCCCCCS
T ss_pred             --------cCCeEEEEEEeCCCcEEEEeCEEEEcCCCCchHHHHcCCCCccceeeeEEEEEEEEecCCC-cceEEEecCC
Confidence                    334577776  678 6899999999999999999999988888888888888877766544 1222 35577


Q ss_pred             CcEEE-EecCCCce-EEEEEcCCCC-hHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccc
Q 010200          289 GPIAL-LPIGDNFS-NIVWTMNPKD-ASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECF  365 (515)
Q Consensus       289 g~~~~-~p~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (515)
                      |++++ +|++++.. +++|...... .......+.+++.+.+.+.+.    ..               ++          
T Consensus       248 G~~~~~~P~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~---------------~~----------  298 (570)
T 3fmw_A          248 GILVLAFPPEGGLGPGWSSSSTGHSPAADEGPVTLEDLGAAVARVRG----TP---------------LT----------  298 (570)
T ss_dssp             SCEEECCCC------CEEEEEESCC-----CCCCHHHHHHHTTSSSS----CC---------------CC----------
T ss_pred             EEEEEEeecCCCeEEEEEEEeCCCCccccccCCCHHHHHHHHHHHhh----cc---------------cc----------
Confidence            88887 89998887 7777765333 223345667777776655332    00               00          


Q ss_pred             cCCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHH
Q 010200          366 EVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLK  445 (515)
Q Consensus       366 ~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~  445 (515)
                           ..........|++..+..++|..++|+|+|||||.++|+.|||+|+||+||.+|+++|...++..   ....+|+
T Consensus       299 -----~~~~~~~~~~~~~~~~~a~~~~~grv~LvGDAAH~~~P~~GqG~n~gl~DA~~La~~La~~~~g~---~~~~lL~  370 (570)
T 3fmw_A          299 -----LTEPVSWLSRFGDASRQAKRYRSGRVLLAGDAAHVHFPIGGQGLNTGLQDAVNLGWKLAARVRGW---GSEELLD  370 (570)
T ss_dssp             -----CCSCCEEEEEECCCCEECSCSEETTEEECGGGTEECCCCSSCHHHHHHHHHHHHHHHHHHHHHSC---CCHHHHH
T ss_pred             -----cceeeeeeEEeecccccccccccCCEEEEEecceecCCCcCcCHhHHHHHHHHHHHHHHHHHcCC---CcHHHHH
Confidence                 00111123357887778899999999999999999999999999999999999999999987642   3488999


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhcCCCC
Q 010200          446 KYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQRL  507 (515)
Q Consensus       446 ~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~~~  507 (515)
                      .|+++|++++..++..++.+..+|+....+...+|+.++.++ .+|.+++.+++..+|+...
T Consensus       371 ~Ye~eR~~~~~~~~~~s~~~~~l~~~~~~~~~~lR~~~~~l~-~~~~~~~~~~~~~~g~~~~  431 (570)
T 3fmw_A          371 TYHDERHPVAERVLLNTRAQLALMRPDEQHTTPLRGFVEELL-GTDEVNRYFTGMITGTDVR  431 (570)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCSCTTTHHHHHHHHHHHT-TSHHHHHHHHHHHHSTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh-cCHHHHHHHHHHHhCCCcc
Confidence            999999999999999999999999987666899999999999 7899999999999987643

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=100.00  E-value=1.9e-43  Score=362.09  Aligned_cols=374  Identities=17%  Similarity=0.217  Sum_probs=276.8

Q ss_pred             CCCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhh
Q 010200           51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYV  130 (515)
Q Consensus        51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~  130 (515)
                      ...+++||+||||||+||++|+.|++.    |++|+||||.+.+.          ..++++.++++++++|+.+|+++.+
T Consensus        19 ~~~~~~dV~IVGaG~aGl~~A~~La~~----G~~V~v~E~~~~~~----------~~~~~~~l~~~~~~~l~~lg~~~~~   84 (407)
T 3rp8_A           19 YFQGHMKAIVIGAGIGGLSAAVALKQS----GIDCDVYEAVKEIK----------PVGAAISVWPNGVKCMAHLGMGDIM   84 (407)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSSCC--------------CEEEECHHHHHHHHHTTCHHHH
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHhC----CCCEEEEeCCCCCC----------CcCeeEEECHHHHHHHHHCCCHHHH
Confidence            344679999999999999999999996    99999999998763          3456899999999999999999999


Q ss_pred             hhhhccccceEEEEeCC-CccceeeecccC--CCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCc
Q 010200          131 QQHRHAYFDKMQVWDYT-GLGYTKYNARDV--NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSI  207 (515)
Q Consensus       131 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~  207 (515)
                      .+... +...+.+++.. +.....++....  .....++.++|..|.+.|.+.+.+   ++|+++++|++++.       
T Consensus        85 ~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~---~~i~~~~~v~~i~~-------  153 (407)
T 3rp8_A           85 ETFGG-PLRRMAYRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR---DSVQFGKRVTRCEE-------  153 (407)
T ss_dssp             HHHSC-CCCEEEEEETTTCCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG---GGEEESCCEEEEEE-------
T ss_pred             HhhcC-CCcceEEEECCCCCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc---CEEEECCEEEEEEe-------
Confidence            88766 67788888766 444444442211  112445889999999999999976   68999999999987       


Q ss_pred             ccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhc-CCccccccCCceEEEEEEEeecC--CceEE-E
Q 010200          208 SVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELA-GFKTTGWSYSQNAIICTVEHNKE--NYCAW-Q  283 (515)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~  283 (515)
                                   .++.+++++.+|+++.+|+||+|||.+|.+|+.+ +........+...+.+.++....  ....+ .
T Consensus       154 -------------~~~~v~v~~~~g~~~~a~~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (407)
T 3rp8_A          154 -------------DADGVTVWFTDGSSASGDLLIAADGSHSALRPWVLGFTPQRRYAGYVNWNGLVEIDEALAPGDQWTT  220 (407)
T ss_dssp             -------------ETTEEEEEETTSCEEEESEEEECCCTTCSSHHHHHSSCCCCEEEEEEEEEEEEECCTTTCCTTEEEE
T ss_pred             -------------cCCcEEEEEcCCCEEeeCEEEECCCcChHHHHHhcCCCCCCcccCcEEEEEEEecccccCCCCceEE
Confidence                         4467899999999999999999999999999999 65544444455555566554422  22333 3


Q ss_pred             EecCCCcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccc
Q 010200          284 RFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKE  363 (515)
Q Consensus       284 ~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (515)
                      .+.++++++++|++++...+++....+..   ...+.+.+.+.+.+.+. .|.+.       ..+.+..    ...    
T Consensus       221 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~-~~~~~-------~~~~~~~----~~~----  281 (407)
T 3rp8_A          221 FVGEGKQVSLMPVSAGRFYFFFDVPLPAG---LAEDRDTLRADLSRYFA-GWAPP-------VQKLIAA----LDP----  281 (407)
T ss_dssp             EEETTEEEEEEEETTTEEEEEEEEECCTT---CSCCTTTHHHHHHHHTT-TCCHH-------HHHHHHH----SCG----
T ss_pred             EECCCcEEEEEEcCCCeEEEEEEeCCCcC---CCCCchhHHHHHHHHhc-CCChH-------HHHHHHc----CCc----
Confidence            44788999999999998888777653321   12344566677777665 33322       1111111    000    


Q ss_pred             cccCCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHH
Q 010200          364 CFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASL  443 (515)
Q Consensus       364 ~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~a  443 (515)
                           ..+    .....+++.  ..++|..++|+|||||||.++|++|||+|+||+||..|+++|...   +   ....+
T Consensus       282 -----~~~----~~~~~~~~~--~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~al~da~~La~~L~~~---~---~~~~~  344 (407)
T 3rp8_A          282 -----QTT----NRIEIHDIE--PFSRLVRGRVALLGDAGHSTTPDIGQGGCAAMEDAVVLGAVFRQT---R---DIAAA  344 (407)
T ss_dssp             -----GGC----EEEEEEECC--CCSCCEETTEEECGGGTCCCCGGGSCHHHHHHHHHHHHHHHHHSC---C---CHHHH
T ss_pred             -----cce----eEEeeEecC--CCCceecCCEEEEEcccccCCcchhhhHHHHHHHHHHHHHHHhcC---C---CHHHH
Confidence                 000    001123332  237888999999999999999999999999999999999999853   2   34889


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHH
Q 010200          444 LKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIIS  499 (515)
Q Consensus       444 l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~  499 (515)
                      |+.|+++|++++..++..++.+.++++..+++..+.|+..++.... +.+.+.+..
T Consensus       345 l~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~R~~~l~~~~~-~~~~~~~~~  399 (407)
T 3rp8_A          345 LREYEAQRCDRVRDLVLKARKRCDITHGKDMQLTEAWYQELREETG-ERIINGMCD  399 (407)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHSCCS-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHhhccH-HHHHHhhhh
Confidence            9999999999999999999999999999999999999999987764 334444433

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=100.00  E-value=5.9e-44  Score=364.98  Aligned_cols=375  Identities=19%  Similarity=0.220  Sum_probs=267.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      .++||+||||||+|+++|+.|++.    |++|+||||.+.+.          ..+++..+.+++.++|+.+|+++.+...
T Consensus         5 ~~~dVvIVGaG~aGl~~A~~L~~~----G~~V~viE~~~~~~----------~~~~~~~l~~~~~~~l~~~g~~~~~~~~   70 (399)
T 2x3n_A            5 NHIDVLINGCGIGGAMLAYLLGRQ----GHRVVVVEQARRER----------AINGADLLKPAGIRVVEAAGLLAEVTRR   70 (399)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT----TCCEEEECSSCCC-------------CCCCEECHHHHHHHHHTTCHHHHHHT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhC----CCcEEEEeCCCCCC----------ccCceeeECchHHHHHHHcCcHHHHHHh
Confidence            358999999999999999999996    99999999997652          3345789999999999999999988765


Q ss_pred             hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (515)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~  213 (515)
                      .. ....+.+++..+.....++.........++.++|..|.+.|.+.+.+.++++|+++++|++++.             
T Consensus        71 ~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~-------------  136 (399)
T 2x3n_A           71 GG-RVRHELEVYHDGELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQR-------------  136 (399)
T ss_dssp             TC-EEECEEEEEETTEEEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEE-------------
T ss_pred             CC-CcceeEEEeCCCCEEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEE-------------
Confidence            44 5566666665554344444333333455788999999999999999983399999999999986             


Q ss_pred             CcccccccCCee--EEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccc--cCCc--eEEEEEEEeecCCceEEEEecC
Q 010200          214 SATTLFTKGHLA--KLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGW--SYSQ--NAIICTVEHNKENYCAWQRFLP  287 (515)
Q Consensus       214 ~~~~~~~~~~~~--~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~  287 (515)
                             +++.+  .+++.+|+++.+|+||+|||.+|.+|+.++......  .++.  .++.+.++...+.. . ..+.+
T Consensus       137 -------~~~~v~g~v~~~~g~~~~ad~vV~AdG~~s~vr~~lg~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~-~~~~~  207 (399)
T 2x3n_A          137 -------DERHAIDQVRLNDGRVLRPRVVVGADGIASYVRRRLLDIDVERRPYPSPMLVGTFALAPCVAERN-R-LYVDS  207 (399)
T ss_dssp             -------CTTSCEEEEEETTSCEEEEEEEEECCCTTCHHHHHTSCCCCCCCCCSSCEEEEEEECCHHHHHCE-E-EEECT
T ss_pred             -------cCCceEEEEEECCCCEEECCEEEECCCCChHHHHHhCCCccccCCCCCCceEEEEEEecCCCCCc-c-EEEcC
Confidence                   33456  788889989999999999999999999998765555  5666  66666555432222 3 66778


Q ss_pred             -CCcEEEEecCCCceEEEEEcCCCChHHhhc-CCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccc
Q 010200          288 -AGPIALLPIGDNFSNIVWTMNPKDASDCKS-MNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECF  365 (515)
Q Consensus       288 -~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (515)
                       +++++++|++++...+....+.+....... .+.+.+.+.+.     .|.+...      ...++.             
T Consensus       208 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~------~~~~~~-------------  263 (399)
T 2x3n_A          208 QGGLAYFYPIGFDRARLVVSFPREEARELMADTRGESLRRRLQ-----RFVGDES------AEAIAA-------------  263 (399)
T ss_dssp             TSCEEEEEEETTTEEEEEEECCHHHHHHHHHSTTSHHHHHHHH-----TTCCGGG------HHHHHT-------------
T ss_pred             CCcEEEEEEcCCCEEEEEEEeCccccccccccCCHHHHHHHHh-----hcCCcch------hhHHhc-------------
Confidence             899999999885544444334332222211 34455555443     2222100      000100             


Q ss_pred             cCCcceEEeccceeeecccc-ccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHH
Q 010200          366 EVPPRVVKLASERMVFPLSL-KHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLL  444 (515)
Q Consensus       366 ~i~~~~~~~~~~~~~~p~~~-~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al  444 (515)
                       +     . ......+|+.. ...++|..++|+|+|||||.++|++|||+|+||+||..|++.|...++.+.++  ..+|
T Consensus       264 -~-----~-~~~~~~~~~~~~~~~~~~~~~rv~lvGDAAh~~~P~~GqG~~~al~da~~La~~L~~~~~~~~~~--~~~l  334 (399)
T 2x3n_A          264 -V-----T-GTSRFKGIPIGYLNLDRYWADNVAMLGDAIHNVHPITGQGMNLAIEDASALADALDLALRDACAL--EDAL  334 (399)
T ss_dssp             -C-----C-CSTTCEECCCCCEECSCSEETTEEECGGGTEECCGGGCCHHHHHHHHHHHHHHHHHHHHTTSSCH--HHHH
T ss_pred             -C-----C-ccceEEechhhcccccccccCcEEEEechhccCCCcccccHHHHHHHHHHHHHHHHhhhcccchH--HHHH
Confidence             0     0 00223467766 56788999999999999999999999999999999999999999987644444  7899


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHH
Q 010200          445 KKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIIS  499 (515)
Q Consensus       445 ~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~  499 (515)
                      +.|+++|++++..++..++.+.++++..+++..++ +.+++++...|.+......
T Consensus       335 ~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~  388 (399)
T 2x3n_A          335 AGYQAERFPVNQAIVSYGHALATSLEDRQRFAGVF-DTALQGSSRTPEALGGERS  388 (399)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HC-----------------
T ss_pred             HHHHHHhccHHHHHHHHHHHhhhhhcccCchHHHH-HHHHhhhcCCCcccCCccc
Confidence            99999999999999999999999999988888889 9999988887765444333

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=100.00  E-value=2e-41  Score=345.64  Aligned_cols=377  Identities=15%  Similarity=0.119  Sum_probs=268.7

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      ++||+||||||+||++|+.|++.    |++|+||||.+.+..        ....++..++++++++|+.+|+++.+.+..
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~----G~~v~v~E~~~~~~~--------~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~   69 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKA----GIDNVILERQTPDYV--------LGRIRAGVLEQGMVDLLREAGVDRRMARDG   69 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHH----TCCEEEECSSCHHHH--------HTCCCCCEECHHHHHHHHHTTCCHHHHHHC
T ss_pred             CccEEEECCCHHHHHHHHHHHHC----CCCEEEEeCCCCCcc--------cCCCceEeECHHHHHHHHHcCCcHHHHhcC
Confidence            47999999999999999999996    999999999875200        001123358999999999999999988765


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                      . +...+.++.....  ..++.........++.+.+..+.+.|.+.+.+.| ++|+++++|++++.              
T Consensus        70 ~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g-~~i~~~~~v~~i~~--------------  131 (394)
T 1k0i_A           70 L-VHEGVEIAFAGQR--RRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACG-ATTVYQAAEVRLHD--------------  131 (394)
T ss_dssp             E-EESCEEEEETTEE--EEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTT-CEEESSCEEEEEEC--------------
T ss_pred             C-ccceEEEEECCce--EEeccccccCCCceEEechHHHHHHHHHHHHhcC-CeEEeceeEEEEEE--------------
Confidence            5 5566666654322  2222111111334677899999999999998887 99999999999975              


Q ss_pred             cccccccCCeeEEEc-CCCc--EEEeeEEEEecCCCchhhhhcCCccccccCCc---eEEEEEEEe-ecCCceEEEEecC
Q 010200          215 ATTLFTKGHLAKLDL-SDGT--SLYAKLVVGADGGKSRVRELAGFKTTGWSYSQ---NAIICTVEH-NKENYCAWQRFLP  287 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~-~~g~--~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~  287 (515)
                           ++++.+.|++ .+|+  ++++|+||+|||.+|.+|+.++..... .+..   ..+...+.. .......+....+
T Consensus       132 -----~~~~~~~v~~~~~g~~~~~~a~~vV~AdG~~S~vr~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (394)
T 1k0i_A          132 -----LQGERPYVTFERDGERLRLDCDYIAGCDGFHGISRQSIPAERLK-VFERVYPFGWLGLLADTPPVSHELIYANHP  205 (394)
T ss_dssp             -----TTSSSCEEEEEETTEEEEEECSEEEECCCTTCSTGGGSCGGGCE-EEEEEEEEEEEEEEESSCCSCSSCEEECCT
T ss_pred             -----ecCCceEEEEecCCcEEEEEeCEEEECCCCCcHHHHhcCccccc-cccccccceeEEEecCCCCCccceEEEEcC
Confidence                 0123466776 6786  799999999999999999999654221 1111   112222221 1111222223346


Q ss_pred             CCcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccC
Q 010200          288 AGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEV  367 (515)
Q Consensus       288 ~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  367 (515)
                      .+++++.|..++..++++......  .....+.+.+.+.+.+.|. .|              ..+.+..           
T Consensus       206 ~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-~~--------------~~~~~~~-----------  257 (394)
T 1k0i_A          206 RGFALCSQRSATRSQYYVQVPLSE--KVEDWSDERFWTELKARLP-SE--------------VAEKLVT-----------  257 (394)
T ss_dssp             TCCEEEEEEETTEEEEEEEECTTC--CGGGCCHHHHHHHHHHTSC-HH--------------HHHHCCC-----------
T ss_pred             CceEEEEecCCCcEEEEEEeCCCC--CccccCHHHHHHHHHHhhC-cc--------------ccccccc-----------
Confidence            677777676667777777665432  1233566777777776543 00              0010000           


Q ss_pred             CcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHH
Q 010200          368 PPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKY  447 (515)
Q Consensus       368 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y  447 (515)
                       ....    ....+|+.....++|..+||+|||||||.++|+.|||+|+||+||..|++.|...++.+.    ..+|+.|
T Consensus       258 -~~~~----~~~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~GqG~~~ai~da~~La~~L~~~~~~~~----~~~L~~Y  328 (394)
T 1k0i_A          258 -GPSL----EKSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGR----GELLERY  328 (394)
T ss_dssp             -CCEE----EEEEEEEEEEEEECSEETTEEECGGGTEECCGGGTCHHHHHHHHHHHHHHHHHHHHHHCC----GGGGGGH
T ss_pred             -Ccce----eeEEEEhhhhhccccccCCEEEEechhhcCCCcccchHHHHHHHHHHHHHHHHHHhccCc----hHHHHHH
Confidence             0000    112356555566778899999999999999999999999999999999999998765432    5689999


Q ss_pred             HHHhhHHHHHHHHHHHHHHHhhc---CCCChHHHHHHHHHHhcccChhHHHHHHHHhhcC
Q 010200          448 EAERKPANIVMMAVLDGFQKAYS---VDFGPLNILRAAAFHGAQYISPLKRNIISYASGE  504 (515)
Q Consensus       448 ~~~r~~~~~~~~~~s~~~~~~~~---~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~  504 (515)
                      +++|++++..++..++.+..+++   ..++++.++|+..|..+...|.+++.+++.++|.
T Consensus       329 ~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~g~  388 (394)
T 1k0i_A          329 SAICLRRIWKAERFSWWMTSVLHRFPDTDAFSQRIQQTELEYYLGSEAGLATIAENYVGL  388 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHhhcCCHHHHHHHHHHhcCC
Confidence            99999999999999998887765   3457888999999999999999999999999997

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=100.00  E-value=8.9e-41  Score=360.55  Aligned_cols=354  Identities=19%  Similarity=0.262  Sum_probs=258.1

Q ss_pred             CccEEEECCCHHHHHHHHHHhc-----CCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchh
Q 010200           55 QYDVAVVGGGMVGMALACSLAS-----MPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQY  129 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~-----~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~  129 (515)
                      ++||+||||||+||++|+.|++     .    |++|+||||.+.+          ...+++..++++++++|+.+|+++.
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~----Gi~v~viE~~~~~----------~~~gra~~l~~~tle~l~~lGl~~~   73 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKP----DLKVRIIDKRSTK----------VYNGQADGLQCRTLESLKNLGLADK   73 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHST----TCCEEEECSSSSC----------CCSCSCCEECHHHHHHHHTTTCHHH
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccC----CCCEEEEeCCCCC----------CCCCceeEEChHHHHHHHHCCCHHH
Confidence            5899999999999999999999     8    8999999998765          2346688999999999999999999


Q ss_pred             hhhhhccccceEEEEeCCCcccee----eeccc-CCCCcceEEechHHHHHHHHHHHhcCC--CceEEcCCeeEEEEeCC
Q 010200          130 VQQHRHAYFDKMQVWDYTGLGYTK----YNARD-VNKEILGCVVENKVLHSSLLSCMQNTE--FQKTIYPSRLTSMALLP  202 (515)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~i~r~~l~~~L~~~~~~~g--~v~i~~~~~v~~i~~~~  202 (515)
                      +.+... +...+.+|+......+.    ++... .......+.++|..+++.|.+.+.+.|  +++|+++++|++++.+.
T Consensus        74 l~~~~~-~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~l~q~~le~~L~~~~~~~g~~~v~v~~g~~v~~~~~d~  152 (665)
T 1pn0_A           74 ILSEAN-DMSTIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEISDTRIKVERPLIPEKMEIDS  152 (665)
T ss_dssp             HHTTCB-CCCEEEEEEECTTSCEEEEEEEESSCTTSCSSCCEECCHHHHHHHHHHHHHHHHTTSSCEECSEEEEEEEECG
T ss_pred             HHHhcc-ccceEEEEeCCCCcceEeecccCcccCCCCCCeeEEeeHHHHHHHHHHHHHhcCCCceEEEeCCEEEEEEecC
Confidence            987665 67778888754322221    21111 112334477999999999999998875  58999999999998721


Q ss_pred             CCCCcccCCCCCcccccccCCeeEEEcC------------------------------------------CC--cEEEee
Q 010200          203 SSSSISVDSTPSATTLFTKGHLAKLDLS------------------------------------------DG--TSLYAK  238 (515)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~------------------------------------------~g--~~~~ad  238 (515)
                      .     ...+.       +...+++++.                                          +|  ++++||
T Consensus       153 ~-----~~~~~-------~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~G~~~~i~A~  220 (665)
T 1pn0_A          153 S-----KAEDP-------EAYPVTMTLRYMSEDESTPLQFGHKTENGLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCK  220 (665)
T ss_dssp             G-----GTTCT-------TCCCEEEEEEECCGGGSCCCTTCCCCCSSSCCCHHHHHHHHHTSCCCSTTCCTTCEEEEEEE
T ss_pred             c-----ccccC-------CCCCEEEEEEecccccccccccccccccccccccccccccccccccccccCCCCceEEEEeC
Confidence            0     00000       1123555442                                          45  479999


Q ss_pred             EEEEecCCCchhhhhcCCccccccCCceEEEEEEEee--cCC-ceEEEEe-cCCCcEEEEecCCCceEEEEEcCCCCh--
Q 010200          239 LVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHN--KEN-YCAWQRF-LPAGPIALLPIGDNFSNIVWTMNPKDA--  312 (515)
Q Consensus       239 ~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~-~~~g~~~~~p~~~~~~~~~~~~~~~~~--  312 (515)
                      +||+|||++|.||++++....+..+...+....+...  .+. ......+ .+.++++++|.+++.+++++.......  
T Consensus       221 ~VVGADG~~S~VR~~lg~~~~g~~~~~~~~v~d~~~~~~~p~~~~~~~~~~~~~g~~~~~P~~~~~~r~~~~~~~~~~~~  300 (665)
T 1pn0_A          221 YVIGCDGGHSWVRRTLGFEMIGEQTDYIWGVLDAVPASNFPDIRSRCAIHSAESGSIMIIPRENNLVRFYVQLQARAEKG  300 (665)
T ss_dssp             EEEECCCTTCHHHHHHTCCCEEEEEEEEEEEEEEEEECCCTTTTSEEEEECSSSCEEEEEECSTTCEEEEEEECC-----
T ss_pred             EEEeccCCCCHHHHhcCCCCCCCCccEEEEEEEEEECCCCCCcceEEEEEeCCCceEEEEEcCCCEEEEEEEeCCccccc
Confidence            9999999999999999887766655544333333222  121 1122222 368999999999998888887765431  


Q ss_pred             --HHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCcceEEeccceeeeccccccccc
Q 010200          313 --SDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANN  390 (515)
Q Consensus       313 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~~~  390 (515)
                        ......+.+.+.+.+++.+. .|..                                .+ .....+..|++..+.+++
T Consensus       301 ~~~~~~~~t~e~~~~~~~~~~~-~~~~--------------------------------~~-~~~~~~~~~~~~~r~a~~  346 (665)
T 1pn0_A          301 GRVDRTKFTPEVVIANAKKIFH-PYTF--------------------------------DV-QQLDWFTAYHIGQRVTEK  346 (665)
T ss_dssp             -----CCCCHHHHHHHHHHHHT-TSCC--------------------------------EE-EEEEEEEEEEEEEEECSC
T ss_pred             cccCcCCCCHHHHHHHHHHHhC-cccC--------------------------------ce-eeEEEEEeeeccceehhh
Confidence              12344677888888877553 1100                                01 111223357777777889


Q ss_pred             cc-cCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q 010200          391 YV-SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAY  469 (515)
Q Consensus       391 ~~-~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~  469 (515)
                      |. .+||+|+|||||.++|+.|||+|+||+||.+|++.|...++..   ....+|+.|+++|++++..++..++.+.++|
T Consensus       347 ~~~~gRV~L~GDAAH~~~P~~GqG~N~gi~DA~nLawkLa~vl~g~---a~~~lL~tYe~eR~p~a~~~i~~s~~~~~l~  423 (665)
T 1pn0_A          347 FSKDERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKLGLVLTGR---AKRDILKTYEEERQPFAQALIDFDHQFSRLF  423 (665)
T ss_dssp             SEETTTEEECGGGTEECCSTTCCHHHHHHHHHHHHHHHHHHHHTTC---BCGGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEECccccCCCcccCCcchhHHHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            98 7999999999999999999999999999999999999988632   3367999999999999999999999999998


Q ss_pred             cCC
Q 010200          470 SVD  472 (515)
Q Consensus       470 ~~~  472 (515)
                      +..
T Consensus       424 ~~~  426 (665)
T 1pn0_A          424 SGR  426 (665)
T ss_dssp             HSC
T ss_pred             cCC
Confidence            764

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=100.00  E-value=8.3e-41  Score=342.58  Aligned_cols=364  Identities=15%  Similarity=0.179  Sum_probs=231.8

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh-
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR-  134 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~-  134 (515)
                      ++|+||||||+||++|+.|+++    |++|+||||.+.+...        ..+.++.++++++++|+++|+.+.+.... 
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~----G~~v~v~Er~~~~~~~--------~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~   69 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKH----GIKVTIYERNSAASSI--------LPGYGIHINSFGKQALQECLPAENWLAFEE   69 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSCSSCSS--------CCCCEEEECHHHHHHHHHHSCHHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhC----CCCEEEEecCCCCCcC--------CCceEEeeCHHHHHHHHHcCChHHHHHhhh
Confidence            6899999999999999999996    9999999999877322        23568899999999999999977664421 


Q ss_pred             --ccccceEEEEeCCCccceeee----cccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcc
Q 010200          135 --HAYFDKMQVWDYTGLGYTKYN----ARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSIS  208 (515)
Q Consensus       135 --~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~  208 (515)
                        ........+++..........    ..........+.++|..|.+.|.+.+   + .+|+++++|++++.        
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~---~-~~v~~~~~v~~~~~--------  137 (412)
T 4hb9_A           70 ASRYIGGQSRFYNERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKGL---A-NTIQWNKTFVRYEH--------  137 (412)
T ss_dssp             HCEEECCCCEEECTTSCEEEC--------------CEEEEEHHHHHHHHHTTC---T-TTEECSCCEEEEEE--------
T ss_pred             hhcccCcceeEecCCcceecccCCccccccccccccceEeeHHHHHHHHHhhc---c-ceEEEEEEEEeeeE--------
Confidence              111122223322221111100    00011122336789999999998765   3 56899999999976        


Q ss_pred             cCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC---------c
Q 010200          209 VDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN---------Y  279 (515)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~  279 (515)
                                 .++..++++++||+++++|+||+|||.+|.||+.++.......++..++.+........         .
T Consensus       138 -----------~~~~~v~v~~~dG~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (412)
T 4hb9_A          138 -----------IENGGIKIFFADGSHENVDVLVGADGSNSKVRKQYLPFIERFDVGVSMIIGRARLTPALTALLPQNFRD  206 (412)
T ss_dssp             -----------CTTSCEEEEETTSCEEEESEEEECCCTTCHHHHHHSTTCCCEEEEEEEEEEEEECCHHHHHHSCGGGTS
T ss_pred             -----------cCCCeEEEEECCCCEEEeeEEEECCCCCcchHHHhCCCccccccceeEEEEEEecchhhhcchhhhhcc
Confidence                       12356899999999999999999999999999999877776667777777766654211         1


Q ss_pred             eEEEEecCCCc--E----EEEe--------cCCCceEEEEEc---CCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCC
Q 010200          280 CAWQRFLPAGP--I----ALLP--------IGDNFSNIVWTM---NPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSI  342 (515)
Q Consensus       280 ~~~~~~~~~g~--~----~~~p--------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (515)
                      .....+.+...  .    +..|        .......+.|..   ...........+.+.+.+.+.+.+. +|.+.    
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~----  281 (412)
T 4hb9_A          207 GTPNSIVPKSPDWLFISMWRAPVNIHVEASLAEIDNFIVWVYVAATDSLPDNITDFSAEALCDLVQSRMI-SWDPS----  281 (412)
T ss_dssp             SCCEEECCSSSEEEEEEEEEEESCTTSCGGGCCEEEEEEEEEEEEGGGSCTTGGGCCHHHHHHHHHHHTT-TSCHH----
T ss_pred             CCcceEeecCCCcceeeeeecCCceeEEEeccCCCceEEEEEecccccccccccccchHHHHHHHHHHhc-cCChH----
Confidence            11111112111  0    1111        111111222221   1222223345667778888887776 55433    


Q ss_pred             CCCcccchhccccCccccccccccCCcceEEeccceeeecccc-ccccccccCcEEEEcccccccCCccccchhhcHHHH
Q 010200          343 SSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSL-KHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDA  421 (515)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~-~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da  421 (515)
                         ..+.+..    .+.                .....+++.. ....+|..|+|+|||||||+|+|+.|||+|+||+||
T Consensus       282 ---~~~li~~----~~~----------------~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~DA  338 (412)
T 4hb9_A          282 ---LHTLVQQ----SDM----------------ENISPLHLRSMPHLLPWKSSTVTLLGDAIHNMTPMTGSGANTALRDA  338 (412)
T ss_dssp             ---HHHHHHT----SCT----------------TCCEEEEEEECCCCCCCCCCSEEECTHHHHCSSCCSSSHHHHHHHHH
T ss_pred             ---HHHHHHh----ccc----------------ceeccchhccccccccccccCEEEEEcccccCCCchhhHHHHHHHHH
Confidence               1111111    000                0000122211 135678999999999999999999999999999999


Q ss_pred             HHHHHHHHHhHhcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHH--hhcCCCChHHHHHHHHHH
Q 010200          422 STLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQK--AYSVDFGPLNILRAAAFH  485 (515)
Q Consensus       422 ~~La~~l~~~~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~--~~~~~~~~~~~~r~~~~~  485 (515)
                      .+|+++|........++  ..+|+.|+++|++++..++..+.....  +++...+.. ..|+..++
T Consensus       339 ~~La~~L~~~~~~~~~~--~~aL~~Ye~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~-~~r~~~~~  401 (412)
T 4hb9_A          339 LLLTQKLASVASGHEEL--VKAISDYEQQMRAYANEIVGISLRSAQNAVIHFSIPPL-KQRHLSIR  401 (412)
T ss_dssp             HHHHHHHHHHHTTSSCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------------
T ss_pred             HHHHHHHHHHhcCCcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchH-HHHHHHHh
Confidence            99999999988765544  789999999999999999999887654  344444333 34554443

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=100.00  E-value=9.2e-40  Score=346.34  Aligned_cols=344  Identities=22%  Similarity=0.258  Sum_probs=256.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      .++||+||||||+||++|+.|++.    |++|+||||.+.+.          ..+++..++++++++|+++|+++.+.+.
T Consensus         4 ~~~dVlIVGaG~aGl~~A~~La~~----G~~v~viEr~~~~~----------~~~~~~~l~~~~~~~l~~lGl~~~~~~~   69 (535)
T 3ihg_A            4 HEVDVLVVGAGLGGLSTAMFLARQ----GVRVLVVERRPGLS----------PYPRAAGQNPRTMELLRIGGVADEVVRA   69 (535)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTT----TCCEEEECSSSSCC----------CCCCSCCBCHHHHHHHHHTTCHHHHHHS
T ss_pred             ccCcEEEECcCHHHHHHHHHHHHC----CCCEEEEeCCCCCC----------CCCccceECHHHHHHHHHcCCHHHHHhh
Confidence            568999999999999999999996    99999999998763          3455778999999999999999999886


Q ss_pred             hccccc--eEE--EE-eCCCccce----eeecc----cCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEe
Q 010200          134 RHAYFD--KMQ--VW-DYTGLGYT----KYNAR----DVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMAL  200 (515)
Q Consensus       134 ~~~~~~--~~~--~~-~~~~~~~~----~~~~~----~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~  200 (515)
                      ......  .+.  .. ...+....    .++..    ....+...+.+++..|...|.+.+.+.| ++|+++++|++++.
T Consensus        70 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~g-v~i~~~~~v~~i~~  148 (535)
T 3ihg_A           70 DDIRGTQGDFVIRLAESVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHG-GAIRFGTRLLSFRQ  148 (535)
T ss_dssp             CCSSCTTSCCEEEEESSSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTT-CEEESSCEEEEEEE
T ss_pred             CCCcccccceeeeEEeccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCC-CEEEeCCEEEEEEE
Confidence            652211  111  21 11221111    11100    0011223567899999999999999987 99999999999987


Q ss_pred             CCCCCCcccCCCCCcccccccCC----eeEEEcCCC---cEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEE
Q 010200          201 LPSSSSISVDSTPSATTLFTKGH----LAKLDLSDG---TSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVE  273 (515)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~g---~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~  273 (515)
                                          +++    .+++++.++   .+++||+||+|||.+|.+|+.+|+......+....+...+.
T Consensus       149 --------------------~~~~~~~~v~v~~~~~~~~~~i~a~~vV~AdG~~S~vR~~lgi~~~~~~~~~~~~~~~~~  208 (535)
T 3ihg_A          149 --------------------HDDDAGAGVTARLAGPDGEYDLRAGYLVGADGNRSLVRESLGIGRYGHGTLTHMVGVIFD  208 (535)
T ss_dssp             --------------------ECGGGCSEEEEEEEETTEEEEEEEEEEEECCCTTCHHHHHTTCCEEEEEEEEEEEEEEEE
T ss_pred             --------------------CCCCccccEEEEEEcCCCeEEEEeCEEEECCCCcchHHHHcCCCcCCCCccceEEEEEEe
Confidence                                223    688887776   68999999999999999999998877666654444444444


Q ss_pred             eecCC------ceEEEEecCCCcEEEEecCC-CceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCc
Q 010200          274 HNKEN------YCAWQRFLPAGPIALLPIGD-NFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGS  346 (515)
Q Consensus       274 ~~~~~------~~~~~~~~~~g~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (515)
                      ...+.      ...+..+.++++.+++|..+ +.+.+.|...++........+.+.+.+.+++.+.. ..          
T Consensus       209 ~~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~-~~----------  277 (535)
T 3ihg_A          209 ADLSGIMEPGTTGWYYLHHPEFKGTFGPTDRPDRHTLFVEYDPDEGERPEDFTPQRCVELIGLALDA-PE----------  277 (535)
T ss_dssp             CCGGGTSCTTCCEEEEEECSSCEEEEEECSSTTEEEEEEEECTTTTCCGGGCCHHHHHHHHHHHHTC-SS----------
T ss_pred             ccChhhccCCceEEEEEECCCceEEEEEecCCCEEEEEEeeCccccCccccCCHHHHHHHHHHHhCC-CC----------
Confidence            33211      12344456888889999987 56677776665543444567788888888886641 00          


Q ss_pred             ccchhccccCccccccccccCCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHH
Q 010200          347 VDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSR  426 (515)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~  426 (515)
                                          .+.++.    ....|++.....++|..+||+|+|||||.++|+.|||+|+||+||.+|++
T Consensus       278 --------------------~~~~~~----~~~~~~~~~~~a~~~~~grv~LvGDAAH~~~P~~GqG~n~ai~DA~~La~  333 (535)
T 3ihg_A          278 --------------------VKPELV----DIQGWEMAARIAERWREGRVFLAGDAAKVTPPTGGMSGNAAVADGFDLAW  333 (535)
T ss_dssp             --------------------CCCEEE----EEEEEEEEEEEESCSEETTEEECTTTTEECCSTTSCHHHHHHHHHHHHHH
T ss_pred             --------------------CceeEE----EeeEeeeeEEEECccccCCEEEEecccccCCCccCCccccccccHHHHHH
Confidence                                000111    12347777777899999999999999999999999999999999999999


Q ss_pred             HHHHhHhcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Q 010200          427 IIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYS  470 (515)
Q Consensus       427 ~l~~~~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~  470 (515)
                      +|...++..   ....+|+.|+++|++++..++..+......+.
T Consensus       334 ~La~~l~g~---~~~~lL~~Ye~eR~p~a~~~~~~s~~~~~~~~  374 (535)
T 3ihg_A          334 KLAAVLQGQ---AGAGLLDTYEDERKVAAELVVAEALAIYAQRM  374 (535)
T ss_dssp             HHHHHHTTS---SCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhcCC---CcHHHHHhhHHHHHHHHHHHHHHHHHhhHhhc
Confidence            999987643   23678999999999999999999988876654

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=100.00  E-value=2.5e-38  Score=340.96  Aligned_cols=352  Identities=21%  Similarity=0.299  Sum_probs=248.0

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhc-CCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhh
Q 010200           53 DDQYDVAVVGGGMVGMALACSLAS-MPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQ  131 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~-~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~  131 (515)
                      +.++||+||||||+||++|+.|++ .    |++|+||||.+.+.          ..+++..++++++++|+.+|+.+.+.
T Consensus        30 ~~~~dVlIVGaGpaGL~~A~~La~~~----G~~V~viEr~~~~~----------~~g~a~~l~~~t~e~l~~lGl~~~~~   95 (639)
T 2dkh_A           30 PSQVDVLIVGCGPAGLTLAAQLAAFP----DIRTCIVEQKEGPM----------ELGQADGIACRTMEMFEAFEFADSIL   95 (639)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHTTCT----TSCEEEECSSSSCC----------SSCSCCEECHHHHHHHHHTTCHHHHH
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHhC----CCCEEEEeCCCCCC----------CCCceeeeCHHHHHHHHHcCcHHHHH
Confidence            356899999999999999999999 8    99999999998763          34568899999999999999999988


Q ss_pred             hhhccccceEEEEeCCC--ccce----eeeccc-CCCCcceEEechHHHHHHHHHHHhcCC-CceEEcCCeeEEEEeCCC
Q 010200          132 QHRHAYFDKMQVWDYTG--LGYT----KYNARD-VNKEILGCVVENKVLHSSLLSCMQNTE-FQKTIYPSRLTSMALLPS  203 (515)
Q Consensus       132 ~~~~~~~~~~~~~~~~~--~~~~----~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~~~~g-~v~i~~~~~v~~i~~~~~  203 (515)
                      +... ....+.+|....  ...+    .++... .......+.+++..+.+.|.+.+.+.| +++|+++++|++++.   
T Consensus        96 ~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~---  171 (639)
T 2dkh_A           96 KEAC-WINDVTFWKPDPGQPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKV---  171 (639)
T ss_dssp             HHSE-EECEEEEEEECTTSTTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEE---
T ss_pred             Hhcc-cccceEEECCCCCCCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEE---
Confidence            7665 556677776321  1111    111111 112334578999999999999999998 349999999999987   


Q ss_pred             CCCcccCCCCCcccccccCCeeEEEcC------CC--cEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEe-
Q 010200          204 SSSISVDSTPSATTLFTKGHLAKLDLS------DG--TSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEH-  274 (515)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~v~~~------~g--~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~-  274 (515)
                            +++.       .+..+++++.      +|  .+++||+||+|||.+|.||+.+|....+..+...+....+.. 
T Consensus       172 ------~~~~-------~~~~v~v~~~~~~~~~~G~~~~i~a~~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~~~~~~~  238 (639)
T 2dkh_A          172 ------DHGA-------ADYPVTVTLERCDAAHAGQIETVQARYVVGCDGARSNVRRAIGRQLVGDSANQAWGVMDVLAV  238 (639)
T ss_dssp             ------CTTC-------SSCCEEEEEEECSGGGTTCEEEEEEEEEEECCCTTCHHHHHTTCCCEECSCSCCEEEEEEEEE
T ss_pred             ------CCCC-------CcCCEEEEEEeccccCCCCeEEEEeCEEEECCCcchHHHHHhCCCCCCCCccceEEEEEEEEc
Confidence                  1110       1134666654      45  479999999999999999999988776655554433333221 


Q ss_pred             -ecCC-ceEEEEecCCCcEEEEecCCC-ceEEEEEcCC--CC-hHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCccc
Q 010200          275 -NKEN-YCAWQRFLPAGPIALLPIGDN-FSNIVWTMNP--KD-ASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVD  348 (515)
Q Consensus       275 -~~~~-~~~~~~~~~~g~~~~~p~~~~-~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (515)
                       ..+. ........+.++++++|.+++ ..++++....  +. .......+.+.+.+.+++.+. .|..           
T Consensus       239 ~~~p~~~~~~~~~~~~g~~~~~P~~~~~~~r~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~-~~~~-----------  306 (639)
T 2dkh_A          239 TDFPDVRYKVAIQSEQGNVLIIPREGGHLVRFYVEMDKLDADERVASRNITVEQLIATAQRVLH-PYKL-----------  306 (639)
T ss_dssp             ECCTTTTSEEEEEETTEEEEEEECTTSSCEEEEEECC-----------CCCHHHHHHHHHHHHT-TSCE-----------
T ss_pred             cCCCccceeEEEEcCCceEEEEEcCCCcEEEEEEECCCcCcccccccCCCCHHHHHHHHHHHhC-cccC-----------
Confidence             1121 111211227889999999888 7777777654  11 112334667778777766543 1100           


Q ss_pred             chhccccCccccccccccCCcceEEeccceeeeccccccccccc------------cCcEEEEcccccccCCccccchhh
Q 010200          349 MFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYV------------SKRVVLIGDAAHTVHPLAGQGVNL  416 (515)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~~~~~------------~~~v~lvGDAAh~~~P~~G~G~n~  416 (515)
                                           .+ .....+..|++..+.+++|.            .+||+|+|||||.++|+.|||+|+
T Consensus       307 ---------------------~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~gRV~L~GDAAH~~~P~~GqG~n~  364 (639)
T 2dkh_A          307 ---------------------EV-KNVPWWSVYEIGQRICAKYDDVVDAVATPDSPLPRVFIAGDACHTHSPKAGQGMNF  364 (639)
T ss_dssp             ---------------------EE-EEEEEEEEECCCCEECSCSBSCCCSSCCTTSCCCCEEECGGGTEECCGGGCCTTHH
T ss_pred             ---------------------cc-eeeeEEEecccccchhhhhhccccccccccCccCcEEEEecccccCCCcccccchh
Confidence                                 00 11112223555555566676            899999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCC
Q 010200          417 GFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVD  472 (515)
Q Consensus       417 al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~  472 (515)
                      ||+||.+|++.|...++..   ....+|+.|+++|++++..++..++.+.++++..
T Consensus       365 ai~DA~nLawkLa~vl~g~---a~~~lL~~Ye~eR~~~a~~~~~~s~~~~~~~~~~  417 (639)
T 2dkh_A          365 SMQDSFNLGWKLAAVLRKQ---CAPELLHTYSSERQVVAQQLIDFDREWAKMFSDP  417 (639)
T ss_dssp             HHHHHHHHHHHHHHHHTTS---BCGGGGHHHHHHHHHHHHHHHHHHHHSCC-----
T ss_pred             hHHHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999999988632   2367899999999999999999999998888664

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=100.00  E-value=1.6e-38  Score=336.98  Aligned_cols=353  Identities=22%  Similarity=0.256  Sum_probs=244.8

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      ..+||+||||||+||++|+.|++.    |++|+||||.+.+.          ..+++..++++++++|+.+|+.+.+.+.
T Consensus        25 ~~~dVlIVGaGpaGl~~A~~La~~----G~~V~vlEr~~~~~----------~~~~~~~l~~~~~~~l~~lGl~~~~~~~   90 (549)
T 2r0c_A           25 IETDVLILGGGPVGMALALDLAHR----QVGHLVVEQTDGTI----------THPRVGTIGPRSMELFRRWGVAKQIRTA   90 (549)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT----TCCEEEECSSCSCC----------SSCCCCEECHHHHHHHHHTTCHHHHHTS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC----CCCEEEEeCCCCCC----------CCCceeeeCHHHHHHHHHcCChHHHHhh
Confidence            458999999999999999999996    99999999998763          3345789999999999999999998876


Q ss_pred             hccccc--eEEEEe-CCCccceeeecccC-------CCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCC
Q 010200          134 RHAYFD--KMQVWD-YTGLGYTKYNARDV-------NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPS  203 (515)
Q Consensus       134 ~~~~~~--~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~  203 (515)
                      ......  ...++. ..+.....++....       ......+.+++..+.+.|.+.+.+.    |+++++|++++.   
T Consensus        91 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~----v~~~~~v~~~~~---  163 (549)
T 2r0c_A           91 GWPGDHPLDAAWVTRVGGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER----LRTRSRLDSFEQ---  163 (549)
T ss_dssp             SCCTTSBCCEEEESSBTSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG----EECSEEEEEEEE---
T ss_pred             cCCcccccceEEeccCCCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh----cccCcEEEEEEE---
Confidence            552211  122222 12221122221110       1223457899999999999999865    899999999987   


Q ss_pred             CCCcccCCCCCcccccccCCeeEEEcCC---C--cEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecC-
Q 010200          204 SSSISVDSTPSATTLFTKGHLAKLDLSD---G--TSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKE-  277 (515)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~---g--~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~-  277 (515)
                                       +++.+++++.+   |  .+++||+||+|||.+|.||+.+|.......+...++...++.+.. 
T Consensus       164 -----------------~~~~v~v~~~~~~~G~~~~i~a~~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~~~~~~~~~~  226 (549)
T 2r0c_A          164 -----------------RDDHVRATITDLRTGATRAVHARYLVACDGASSPTRKALGIDAPPRHRTQVFRNILFRAPELR  226 (549)
T ss_dssp             -----------------CSSCEEEEEEETTTCCEEEEEEEEEEECCCTTCHHHHHHTCCCCBSSCCEEEEEEEEECTTHH
T ss_pred             -----------------eCCEEEEEEEECCCCCEEEEEeCEEEECCCCCcHHHHHcCCCCCCCcccceEEEEEEECCchH
Confidence                             33457777654   6  379999999999999999999988777766666666666664311 


Q ss_pred             -----Cc-eEEEEecCC-CcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccch
Q 010200          278 -----NY-CAWQRFLPA-GPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMF  350 (515)
Q Consensus       278 -----~~-~~~~~~~~~-g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (515)
                           .. ..+..+.++ ++++++|++++. .+.+..+. ...   ..+.+.+.+.+++.+..   +             
T Consensus       227 ~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~-~~~~~~~~-~~~---~~~~~~~~~~l~~~~~~---~-------------  285 (549)
T 2r0c_A          227 SLLGERAALFFFLMLSSSLRFPLRALDGRG-LYRLTVGV-DDA---SKSTMDSFELVRRAVAF---D-------------  285 (549)
T ss_dssp             HHHGGGCCSEEEEEEETTEEEEEEESSSSS-EEEEEEEC-STT---CCSCCCHHHHHHHHBCS---C-------------
T ss_pred             HhcCCCCceEEEEECCCCcEEEEEEECCCc-EEEEEecC-CCC---CCCHHHHHHHHHHHhCC---C-------------
Confidence                 11 223334566 678899986643 22333221 111   14556666666665431   0             


Q ss_pred             hccccCccccccccccCCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHH
Q 010200          351 SWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAE  430 (515)
Q Consensus       351 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~  430 (515)
                                      ++-++..    ...|++..+.+++|..|||+|+|||||.++|+.|||+|+||+||.+|+++|..
T Consensus       286 ----------------~~~~~~~----~~~~~~~~~~a~~~~~grv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~  345 (549)
T 2r0c_A          286 ----------------TEIEVLS----DSEWHLTHRVADSFSAGRVFLTGDAAHTLSPSGGFGMNTGIGSAADLGWKLAA  345 (549)
T ss_dssp             ----------------CCCEEEE----EEEEEECCEECSCSEETTEEECGGGTEECCCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------CceeEEE----EecchhHhhhHHhhcCCcEEEEccccccCCCccCCccccccHHHHHHHHHHHH
Confidence                            0001111    12366666678899999999999999999999999999999999999999999


Q ss_pred             hHhcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCC---------CChHHHHHHHHHHhcc
Q 010200          431 GIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVD---------FGPLNILRAAAFHGAQ  488 (515)
Q Consensus       431 ~~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~---------~~~~~~~r~~~~~~~~  488 (515)
                      .++..   ....+|+.|+++|++++..++..+..+..++...         ++....+|+.+...+.
T Consensus       346 ~l~g~---a~~~lL~~Y~~eR~~~a~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~  409 (549)
T 2r0c_A          346 TLRGW---AGPGLLATYEEERRPVAITSLEEANVNLRRTMDRELPPGLHDDGPRGERIRAAVAEKLE  409 (549)
T ss_dssp             HHHTC---SCTTTTHHHHHHHHHHHHHHHHC----------CCCCTTTTCCSHHHHHHHHHHHHHHH
T ss_pred             HHcCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCcchHHHHHHHHHHHH
Confidence            87643   2367899999999999999999999988877642         4556678887776664

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=100.00  E-value=5.9e-38  Score=320.20  Aligned_cols=335  Identities=21%  Similarity=0.226  Sum_probs=234.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      .++||+||||||+||++|+.|++.    |++|+||||.+.+.         ...++++.+++++.++|+.+|+++  ...
T Consensus         4 ~~~~V~IVGaG~aGl~~A~~L~~~----G~~v~v~E~~~~~~---------~~~~~g~~l~~~~~~~l~~~g~~~--~~~   68 (397)
T 2vou_A            4 TTDRIAVVGGSISGLTAALMLRDA----GVDVDVYERSPQPL---------SGFGTGIVVQPELVHYLLEQGVEL--DSI   68 (397)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSSC---------CCCSCEEECCHHHHHHHHHTTCCG--GGT
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhC----CCCEEEEecCCCCC---------CccccccccChhHHHHHHHcCCcc--ccc
Confidence            468999999999999999999996    99999999987641         123568899999999999999987  333


Q ss_pred             hccccceEEEEeC-CCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCC
Q 010200          134 RHAYFDKMQVWDY-TGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (515)
Q Consensus       134 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~  212 (515)
                      .. +...+.+++. .+......+.     .  ...+.+..+.+.|.+.+.  + ++|+++++|++++.            
T Consensus        69 ~~-~~~~~~~~~~~~g~~~~~~~~-----~--~~~~~~~~l~~~L~~~~~--~-~~i~~~~~v~~i~~------------  125 (397)
T 2vou_A           69 SV-PSSSMEYVDALTGERVGSVPA-----D--WRFTSYDSIYGGLYELFG--P-ERYHTSKCLVGLSQ------------  125 (397)
T ss_dssp             CB-CCCEEEEEETTTCCEEEEEEC-----C--CCEEEHHHHHHHHHHHHC--S-TTEETTCCEEEEEE------------
T ss_pred             cc-cccceEEEecCCCCccccccC-----c--ccccCHHHHHHHHHHhCC--C-cEEEcCCEEEEEEe------------
Confidence            33 5666777665 4432222221     1  124778899999998873  4 89999999999986            


Q ss_pred             CCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC--------ceEEEE
Q 010200          213 PSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN--------YCAWQR  284 (515)
Q Consensus       213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~  284 (515)
                              .++.+++++.+|+++.+|+||+|||.+|.+|+.++ .......+...+.+.++.....        ......
T Consensus       126 --------~~~~v~v~~~~g~~~~ad~vV~AdG~~S~vr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (397)
T 2vou_A          126 --------DSETVQMRFSDGTKAEANWVIGADGGASVVRKRLL-GIEPTYAGYVTWRGVLQPGEVADDVWNYFNDKFTYG  196 (397)
T ss_dssp             --------CSSCEEEEETTSCEEEESEEEECCCTTCHHHHHHH-CCCCEEEEEEEEEEEECTTSSCHHHHHHHTTEEEEE
T ss_pred             --------cCCEEEEEECCCCEEECCEEEECCCcchhHHHHhc-cCCCCccceEEEEEEeeccccChhhhhhhcCceeEE
Confidence                    34568899999989999999999999999999997 4322222233344444422111        112223


Q ss_pred             ecCCCcEEEEecCCC------ceEEEEEcCCCChHHhhc------------------CCHHHHHHHHHHhhcCCCCCCCC
Q 010200          285 FLPAGPIALLPIGDN------FSNIVWTMNPKDASDCKS------------------MNEDDFVKILNHALDYGYGPHPK  340 (515)
Q Consensus       285 ~~~~g~~~~~p~~~~------~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~  340 (515)
                      +.+++++.++|++++      ..+++|+.+.+.......                  .+.+. ...+.+.+...|.+   
T Consensus       197 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---  272 (397)
T 2vou_A          197 LLDDGHLIAYPIPGRENAESPRLNFQWYWNVAEGPDLDELMTDVRGIRLPTSVHNNSLNPHN-LRQFHSKGESLFKP---  272 (397)
T ss_dssp             EETTEEEEEEEECCSSTTSCCEEEEEEEEECCTTHHHHHHTBCTTSCBCSSEECGGGCCHHH-HHHHHHHHTTSCHH---
T ss_pred             ecCCCEEEEEECCCCCCccceeEEEEEEecCCCccchhhhccCCCCcccccccCcccCCHHH-HHHHHHHHHhhChH---
Confidence            456677888888763      567777765443111100                  02222 23333322111111   


Q ss_pred             CCCCCcccchhccccCccccccccccCCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHH
Q 010200          341 SISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGD  420 (515)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~d  420 (515)
                               +...                  +........+|+.....++|..|||+|||||||.|+|+.|||+|+||+|
T Consensus       273 ---------~~~~------------------~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~D  325 (397)
T 2vou_A          273 ---------FRDL------------------VLNASSPFVTVVADATVDRMVHGRVLLIGDAAVTPRPHAAAGGAKASDD  325 (397)
T ss_dssp             ---------HHHH------------------HHHCSSCEEEEEEEBCCSCSEETTEEECGGGTSBCCGGGSCHHHHHHHH
T ss_pred             ---------HHHH------------------HhccCCcceeeeeeecCCceecCcEEEEeccccccCCcchhhHHHHHHH
Confidence                     1110                  0111112245666666788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHhcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCC
Q 010200          421 ASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVD  472 (515)
Q Consensus       421 a~~La~~l~~~~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~  472 (515)
                      |..|++.|..    ..+.  ..+|+.|+++|++++..++..++.+..+++..
T Consensus       326 A~~La~~L~~----~~~~--~~~L~~Ye~~R~~~~~~~~~~s~~~~~~~~~~  371 (397)
T 2vou_A          326 ARTLAEVFTK----NHDL--RGSLQSWETRQLQQGHAYLNKVKKMASRLQHG  371 (397)
T ss_dssp             HHHHHHHHHH----CSCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHhc----CCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999975    2233  78999999999999999999999999988764

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=100.00  E-value=2.5e-38  Score=321.00  Aligned_cols=324  Identities=20%  Similarity=0.213  Sum_probs=231.7

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      ..+||+||||||+|+++|+.|++.    |++|+||||.+.++.          .+++..+++++.++|+.+|+++.+...
T Consensus        10 ~~~dVvIVGaG~aGl~~A~~L~~~----G~~v~viE~~~~~~~----------~~~~~~l~~~~~~~l~~~g~~~~~~~~   75 (379)
T 3alj_A           10 KTRRAEVAGGGFAGLTAAIALKQN----GWDVRLHEKSSELRA----------FGAGIYLWHNGLRVLEGLGALDDVLQG   75 (379)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSCCC----------CSSEEEEEHHHHHHHHHTTCHHHHHTT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC----CCCEEEEecCCCCCC----------CCceEEeCccHHHHHHHcCCHHHHHhh
Confidence            468999999999999999999996    999999999987632          355899999999999999999998876


Q ss_pred             hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (515)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~  213 (515)
                      .. ....+.+++. +.....++..    ....+.++|..|.+.|.+.+.+.| ++|+++++|++++.             
T Consensus        76 ~~-~~~~~~~~~~-g~~~~~~~~~----~~~~~~~~r~~l~~~L~~~~~~~g-v~i~~~~~v~~i~~-------------  135 (379)
T 3alj_A           76 SH-TPPTYETWMH-NKSVSKETFN----GLPWRIMTRSHLHDALVNRARALG-VDISVNSEAVAADP-------------  135 (379)
T ss_dssp             CB-CCSCEEEEET-TEEEEEECGG----GCCEEEEEHHHHHHHHHHHHHHTT-CEEESSCCEEEEET-------------
T ss_pred             CC-CccceEEEeC-CceeeeccCC----CCceEEECHHHHHHHHHHHHHhcC-CEEEeCCEEEEEEe-------------
Confidence            55 6677777776 4332223221    223588999999999999999887 99999999999963             


Q ss_pred             CcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEee-----cC-CceEEE---E
Q 010200          214 SATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHN-----KE-NYCAWQ---R  284 (515)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~---~  284 (515)
                               +. +|++.+|+++.+|+||+|||.+|.+|+.++........+..++.+.++..     .. .....+   .
T Consensus       136 ---------~~-~v~~~~g~~~~ad~vV~AdG~~s~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (379)
T 3alj_A          136 ---------VG-RLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLIVPRMKKELGHGEWDNTIDMWNF  205 (379)
T ss_dssp             ---------TT-EEEETTSCEEECSEEEECCCTTCHHHHHHCCCEEEEEEEEEEEEEEEECCHHHHCSSCTTSEEEEECC
T ss_pred             ---------CC-EEEECCCCEEEcCEEEECCCccHHHHHHhcCCCCcCcCCcEEEEEEechhhccCCcCCcccccccceE
Confidence                     22 67778888999999999999999999999764333333444455555552     11 122333   4


Q ss_pred             ecCCCcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCcccccccc
Q 010200          285 FLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKEC  364 (515)
Q Consensus       285 ~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (515)
                      +.++++++++|++++..++++.....+..      ++.+.+.+.....    +.+.     ..+.+...    .      
T Consensus       206 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~----~~~~-----~~~~l~~~----~------  260 (379)
T 3alj_A          206 WPRVQRILYSPCNENELYLGLMAPAADPR------GSSVPIDLEVWVE----MFPF-----LEPCLIEA----A------  260 (379)
T ss_dssp             SSSCCEEEEEECSSSEEEEEEEECTTCTT------TTCSSCCHHHHHH----HCGG-----GHHHHHHH----H------
T ss_pred             ECCCCEEEEEECCCCcEEEEEEecCCCCC------HHHHHHHHhcCCc----hhcc-----HHHHHhhC----C------
Confidence            56889999999999887777766542110      0000000000000    0000     00001000    0      


Q ss_pred             ccCCcceEEeccceeeeccccc-cccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHH
Q 010200          365 FEVPPRVVKLASERMVFPLSLK-HANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASL  443 (515)
Q Consensus       365 ~~i~~~~~~~~~~~~~~p~~~~-~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~a  443 (515)
                                ......+++... ..++|..++|+|||||||.++|+.|||+|+||+||..|++.|...    .+.  ..+
T Consensus       261 ----------~~~~~~~~~~~~~~~~~~~~~rv~lvGDAAh~~~P~~GqG~~~ai~da~~La~~L~~~----~~~--~~~  324 (379)
T 3alj_A          261 ----------KLKTARYDKYETTKLDSWTRGKVALVGDAAHAMCPALAQGAGCAMVNAFSLSQDLEEG----SSV--EDA  324 (379)
T ss_dssp             ----------TCTTCCEEEEEEEEESCSEETTEEECTHHHHCCCGGGSCHHHHHHHHHHHHHHHTTSS----SCH--HHH
T ss_pred             ----------ccceEEecccccCCCCCcccCcEEEEEcccCCCCcchhhhHHHHHHHHHHHHHHhccc----cCH--HHH
Confidence                      001112444442 367888999999999999999999999999999999999999752    233  789


Q ss_pred             HHHHHHHhhHHHHHHHHHH
Q 010200          444 LKKYEAERKPANIVMMAVL  462 (515)
Q Consensus       444 l~~Y~~~r~~~~~~~~~~s  462 (515)
                      |+.|+++|++++..++..+
T Consensus       325 l~~Y~~~r~~~~~~~~~~s  343 (379)
T 3alj_A          325 LVAWETRIRPITDRCQALS  343 (379)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999888

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=100.00  E-value=2.5e-37  Score=316.88  Aligned_cols=338  Identities=18%  Similarity=0.201  Sum_probs=228.4

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcE-EEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhh
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLS-VAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQ  131 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~-V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~  131 (515)
                      +.++||+||||||+||++|+.|++.    |++ |+||||.+.++          ..++++.++++++++|+.+|+++.+.
T Consensus         2 ~~~~dVvIVGaG~aGl~~A~~L~~~----G~~~v~v~E~~~~~~----------~~g~g~~l~~~~~~~l~~lg~~~~l~   67 (410)
T 3c96_A            2 SEPIDILIAGAGIGGLSCALALHQA----GIGKVTLLESSSEIR----------PLGVGINIQPAAVEALAELGLGPALA   67 (410)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHT----TCSEEEEEESSSSCC----------CCSCEEEECHHHHHHHHHTTCHHHHH
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhC----CCCeEEEEECCCCcc----------cceeEEEEChHHHHHHHHCCChHHHH
Confidence            3468999999999999999999996    999 99999998763          24558999999999999999999988


Q ss_pred             hhhccccceEEEEeCCCccceeeeccc-CCCCcceEEechHHHHHHHHHHHhcC-CCceEEcCCeeEEEEeCCCCCCccc
Q 010200          132 QHRHAYFDKMQVWDYTGLGYTKYNARD-VNKEILGCVVENKVLHSSLLSCMQNT-EFQKTIYPSRLTSMALLPSSSSISV  209 (515)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~~~~-g~v~i~~~~~v~~i~~~~~~~~~~~  209 (515)
                      .... +...+.+++..+......+... .......+.++|..|.+.|.+.+.+. |.++|+++++|++++.         
T Consensus        68 ~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~---------  137 (410)
T 3c96_A           68 ATAI-PTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE---------  137 (410)
T ss_dssp             HHSE-EECEEEEECTTSCEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE---------
T ss_pred             hhCC-CcceEEEEcCCCCEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec---------
Confidence            7655 5566666665443322222111 11223357899999999999999763 6468999999999963         


Q ss_pred             CCCCCcccccccCCeeEEEcCC---C--cEEEeeEEEEecCCCchhhhhcCCccccccCCce-EEEEEEEeecC-CceEE
Q 010200          210 DSTPSATTLFTKGHLAKLDLSD---G--TSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQN-AIICTVEHNKE-NYCAW  282 (515)
Q Consensus       210 ~~~~~~~~~~~~~~~~~v~~~~---g--~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~  282 (515)
                                  ++.+++.+.+   |  .++.||+||+|||.+|.+|+.++.......+... .+.+..+.... .....
T Consensus       138 ------------~~~v~v~~~~~~~g~~~~~~ad~vV~AdG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  205 (410)
T 3c96_A          138 ------------RDGRVLIGARDGHGKPQALGADVLVGADGIHSAVRAHLHPDQRPLSHGGITMWRGVTEFDRFLDGKTM  205 (410)
T ss_dssp             ------------ETTEEEEEEEETTSCEEEEEESEEEECCCTTCHHHHHHCTTCCCCEEEEEEEEEEEEEESCCTTSSEE
T ss_pred             ------------CCccEEEEecCCCCCceEEecCEEEECCCccchhHHHhcCCCCCCCcCCeeEEEeecccccccCCCeE
Confidence                        1346677655   6  4799999999999999999999654332233222 22233333221 12233


Q ss_pred             EEec--CCCcEEEEecCC-----CceEEEEEcCCCChH--------H-hhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCc
Q 010200          283 QRFL--PAGPIALLPIGD-----NFSNIVWTMNPKDAS--------D-CKSMNEDDFVKILNHALDYGYGPHPKSISSGS  346 (515)
Q Consensus       283 ~~~~--~~g~~~~~p~~~-----~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (515)
                      ..+.  ++++++++|+.+     +...+.|........        . ......+.+.    +.|. .|.....    ..
T Consensus       206 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~-~~~~~~~----~~  276 (410)
T 3c96_A          206 IVANDEHWSRLVAYPISARHAAEGKSLVNWVCMVPSAAVGQLDNEADWNRDGRLEDVL----PFFA-DWDLGWF----DI  276 (410)
T ss_dssp             EEEECTTCCEEEEEECCHHHHTTTCEEEEEEEEEEHHHHCCCCSSCCTTCBCCHHHHH----HHHT-TCCBTTB----CH
T ss_pred             EEecCCCCcEEEEEecCCcccCCCCcEEEEEEEecCcccccCCCccccCCCCCHHHHH----HHhc-CCCCchh----HH
Confidence            3343  467889999863     445555554322111        0 0112223333    3333 2321100    00


Q ss_pred             ccchhccccCccccccccccCCcceEEeccceeeeccccc-cccccccCcEEEEcccccccCCccccchhhcHHHHHHHH
Q 010200          347 VDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLK-HANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLS  425 (515)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~-~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La  425 (515)
                      .+.+.                      .......+|+... ..++|..+||+|||||||.|+|+.|||+|+||+||..|+
T Consensus       277 ~~~i~----------------------~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~GqG~n~ai~Da~~La  334 (410)
T 3c96_A          277 RDLLT----------------------RNQLILQYPMVDRDPLPHWGRGRITLLGDAAHLMYPMGANGASQAILDGIELA  334 (410)
T ss_dssp             HHHHH----------------------TCSEEEEEEEEECCCCSCCCBTTEEECTHHHHCCCSSTTCTHHHHHHHHHHHH
T ss_pred             HHHHh----------------------cCcccceeecccCCCccccccCCEEEEecccCCCCCccchhHHHHHHHHHHHH
Confidence            00111                      1111223555443 357899999999999999999999999999999999999


Q ss_pred             HHHHHhHhcCCCcchHHHHHHHHHHhhHHHHHHHHHHH
Q 010200          426 RIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLD  463 (515)
Q Consensus       426 ~~l~~~~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~  463 (515)
                      +.|...   + +  ...+|+.|+++|++++..++..++
T Consensus       335 ~~L~~~---~-~--~~~~L~~Ye~~r~~~~~~~~~~s~  366 (410)
T 3c96_A          335 AALARN---A-D--VAAALREYEEARRPTANKIILANR  366 (410)
T ss_dssp             HHHHHC---S-S--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcc---C-C--HHHHHHHHHHHHHHHHHHHHHHhH
Confidence            999873   2 2  378999999999999999988877

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=100.00  E-value=1.2e-36  Score=323.13  Aligned_cols=353  Identities=15%  Similarity=0.160  Sum_probs=251.8

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhh
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQ  131 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~  131 (515)
                      ++.++||+||||||+|+++|+.|++.    |++|+|||+.+.+.           ...+..+.+.+..+++.+|+++.+.
T Consensus        20 ~M~~~DVvIVGgG~AGl~aA~~Lar~----G~~V~LiEr~~~~~-----------~~~G~~l~p~~~~~l~~lGl~~~l~   84 (591)
T 3i3l_A           20 HMTRSKVAIIGGGPAGSVAGLTLHKL----GHDVTIYERSAFPR-----------YRVGESLLPGTMSILNRLGLQEKID   84 (591)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSCSSC-----------CCCCCBCCHHHHHHHHHTTCHHHHH
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHcC----CCCEEEEcCCCCCC-----------CceeeeECHHHHHHHHHcCCcHHHH
Confidence            34579999999999999999999996    99999999997652           1236788999999999999999887


Q ss_pred             hhhccccceEEEEeCCCccceeeecccCC----CCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCc
Q 010200          132 QHRHAYFDKMQVWDYTGLGYTKYNARDVN----KEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSI  207 (515)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~  207 (515)
                      ...........+..........+......    ....++.++|..+...|.+.+++.| ++++++++|++++.       
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~G-v~i~~g~~V~~v~~-------  156 (591)
T 3i3l_A           85 AQNYVKKPSATFLWGQDQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRG-ITVHEETPVTDVDL-------  156 (591)
T ss_dssp             HHCCEEECEEEEECSSSCCCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTT-CEEETTCCEEEEEC-------
T ss_pred             hcCCcccCCcEEEecCCCccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCC-CEEEeCCEEEEEEE-------
Confidence            76543333333332222222222211111    2345688999999999999999987 99999999999976       


Q ss_pred             ccCCCCCcccccccCCeeEEEcC-CC--cEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeec-----CCc
Q 010200          208 SVDSTPSATTLFTKGHLAKLDLS-DG--TSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK-----ENY  279 (515)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~v~~~-~g--~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~  279 (515)
                                  +++..+.|.+. +|  .++.||+||+|||.+|.+|+.++.......+....++..+....     ...
T Consensus       157 ------------~~g~~~~V~~~~~G~~~~i~AdlVV~AdG~~S~lr~~lg~~~~~~~~~~~av~~~~~~~~~~~~~~~~  224 (591)
T 3i3l_A          157 ------------SDPDRVVLTVRRGGESVTVESDFVIDAGGSGGPISRKLGVRQYDEFYRNFAVWSYFKLKDPFEGDLKG  224 (591)
T ss_dssp             ------------CSTTCEEEEEEETTEEEEEEESEEEECCGGGCHHHHHHTCEEEEEEEEEEEEEEEEECCCSCCSTTTT
T ss_pred             ------------cCCCEEEEEEecCCceEEEEcCEEEECCCCcchhHHHcCCCCCCccccceEEEEEEecCccccCCCCC
Confidence                        12345667766 66  47999999999999999999998765444444455555554321     124


Q ss_pred             eEEEEecCCCcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccc
Q 010200          280 CAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATL  359 (515)
Q Consensus       280 ~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (515)
                      ..+..+.+.|++|++|+.++..++.|....+........+.+.+.+.+...++                .+...+.... 
T Consensus       225 ~~~~~~~~~G~~w~iPl~~~~~sv~~~~~~~~~~~l~~~~~~~~~~~l~~~~p----------------~l~~~l~~~~-  287 (591)
T 3i3l_A          225 TTYSITFEDGWVWMIPIKDDLYSVGLVVDRSKSAEVREQGADAFYSSTLAKCA----------------KAMDILGGAE-  287 (591)
T ss_dssp             CEEEEEETTEEEEEEECSSSEEEEEEEEEGGGHHHHHHHCHHHHHHHHHTTCH----------------HHHHHHTTCE-
T ss_pred             ceEEEEcCCcEEEEEECCCCeEEEEEEcCHHHHhhhccCCHHHHHHHHHHhCH----------------HHHHHHhcCc-
Confidence            56667779999999999999888888876655444334455666665554222                1111111100 


Q ss_pred             cccccccCCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcc
Q 010200          360 SAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIG  439 (515)
Q Consensus       360 ~~~~~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~  439 (515)
                                    .......++.......+|..+++++||||||+++|+.|||+|+|++||..|+++|...+..+.  .
T Consensus       288 --------------~~~~~~~~~~~~~~~~~~~~~rvvLIGDAAh~~~Pl~GqGinlAl~dA~~LA~~L~~~l~~~~--~  351 (591)
T 3i3l_A          288 --------------QVDEVRIVQDWSYDTEVFSADRFFLCGDAACFTDPLFSQGVHLASQSAVSAAAAIDRITRHGD--E  351 (591)
T ss_dssp             --------------ECSCCEEEEEEEEEESCSEETTEEECGGGTCBCCGGGCCHHHHHHHHHHHHHHHHHHHHHCGG--G
T ss_pred             --------------cccCceEecccccchhhcccCCEEEEccccccCCCcccccHHHHHHHHHHHHHHHHHHHhCCc--h
Confidence                          001111122222245678889999999999999999999999999999999999999876542  2


Q ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHHH--HhhcCC
Q 010200          440 EASLLKKYEAERKPANIVMMAVLDGFQ--KAYSVD  472 (515)
Q Consensus       440 ~~~al~~Y~~~r~~~~~~~~~~s~~~~--~~~~~~  472 (515)
                      ...+++.|++.|+++...+.++...++  ......
T Consensus       352 ~~~al~~Y~~~~~~~~~~i~~~~~~~Y~~~~~~r~  386 (591)
T 3i3l_A          352 KDAVHAWYNRTYREAYEQYHQFLASFYTFASFTEP  386 (591)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            367899999999999999999999888  444443

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=100.00  E-value=4.8e-36  Score=315.72  Aligned_cols=385  Identities=15%  Similarity=0.122  Sum_probs=258.9

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHH-HHHHcCCchhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATIS-FFKEIGAWQYVQQ  132 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~l~~lgl~~~~~~  132 (515)
                      .++||+||||||+||++|+.|++.    |++|+||||.+.+..           ..+..+.+.... +++.+|+++.+..
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~----G~~V~liE~~~~~~~-----------~~g~~~~~~~~~~~l~~lgl~~~~~~   70 (512)
T 3e1t_A            6 EVFDLIVIGGGPGGSTLASFVAMR----GHRVLLLEREAFPRH-----------QIGESLLPATVHGICAMLGLTDEMKR   70 (512)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTT----TCCEEEECSSCSSCC-----------CSCCBCCHHHHTTHHHHTTCHHHHHT
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhC----CCCEEEEccCCCCCC-----------CCCcccCcchHHHHHHHhCcHHHHHH
Confidence            468999999999999999999996    999999999985521           224566777665 8999999988877


Q ss_pred             hhccccceEEEEeCCCccc--eeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccC
Q 010200          133 HRHAYFDKMQVWDYTGLGY--TKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVD  210 (515)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~  210 (515)
                      ..........+........  ..+..........++.++|..|...|.+.+++.| ++|+++++|++++.          
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~G-v~i~~~~~V~~v~~----------  139 (512)
T 3e1t_A           71 AGFPIKRGGTFRWGKEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKG-VDVRERHEVIDVLF----------  139 (512)
T ss_dssp             TTCCEECEEEEECSSCSSCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTT-CEEESSCEEEEEEE----------
T ss_pred             cCCccccCceEEecCCccccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCC-CEEEcCCEEEEEEE----------
Confidence            6553333222222222111  1222222233455788999999999999999987 99999999999986          


Q ss_pred             CCCCcccccccCC---eeEEEcCCCc--EEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEee----cCC-ce
Q 010200          211 STPSATTLFTKGH---LAKLDLSDGT--SLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHN----KEN-YC  280 (515)
Q Consensus       211 ~~~~~~~~~~~~~---~~~v~~~~g~--~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~----~~~-~~  280 (515)
                                .++   .+++...+|+  ++.||+||+|||.+|.+|+.++.......+...++++.+...    .+. ..
T Consensus       140 ----------~~~~v~gv~~~~~dG~~~~i~ad~VI~AdG~~S~vr~~lg~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  209 (512)
T 3e1t_A          140 ----------EGERAVGVRYRNTEGVELMAHARFIVDASGNRTRVSQAVGERVYSRFFQNVALYGYFENGKRLPAPRQGN  209 (512)
T ss_dssp             ----------ETTEEEEEEEECSSSCEEEEEEEEEEECCCTTCSSGGGTCCEEECSTTCEEEEEEEEESCCCCSTTCTTS
T ss_pred             ----------ECCEEEEEEEEeCCCCEEEEEcCEEEECCCcchHHHHHcCCCccCchhcceEEEEEecCCccCCCCCcCc
Confidence                      222   3666677785  799999999999999999999765555555666777666532    111 34


Q ss_pred             EEEEecCCCcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCcccc
Q 010200          281 AWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLS  360 (515)
Q Consensus       281 ~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (515)
                      .+..+.+.|++|++|+.++..++.|....+..... ..+.++....+....+                .+..++..... 
T Consensus       210 ~~~~~~~~G~~~~~Pl~~~~~~vg~~~~~~~~~~~-~~~~~~~~~~~l~~~p----------------~~~~~l~~~~~-  271 (512)
T 3e1t_A          210 ILSAAFQDGWFWYIPLSDTLTSVGAVVSREAAEAI-KDGHEAALLRYIDRCP----------------IIKEYLAPATR-  271 (512)
T ss_dssp             EEEEEETTEEEEEEECSSSEEEEEEEEEHHHHTTT-SSCHHHHHHHHHHTSH----------------HHHHHHTTCEE-
T ss_pred             eEEEEeCCceEEEEEeCCCeEEEEEEecHHHhhhh-cCCHHHHHHHHHHhCc----------------hHHHHHhcCcc-
Confidence            56667789999999999998888888754332221 1223333333322111                11111110000 


Q ss_pred             ccccccCCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcch
Q 010200          361 AKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGE  440 (515)
Q Consensus       361 ~~~~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~  440 (515)
                         .....-      ......+......++|..++|+|||||||+++|+.|||+|+|++||..|++.|...+....  ..
T Consensus       272 ---~~~~~~------~~i~~~~~~~~~~~~~~~~~vvlvGDAAh~~~P~~GqG~~~Al~dA~~La~~L~~~l~~~~--~~  340 (512)
T 3e1t_A          272 ---VTTGDY------GEIRIRKDYSYCNTSFWKNGMALVGDAACFVDPVFSSGVHLATYSALLVARAINTCLAGEM--SE  340 (512)
T ss_dssp             ---CCSSTT------SSCEEEESCCEEESCSBCSSEEECGGGTEECCSTTCCHHHHHHHHHHHHHHHHHHHTTTCS--CH
T ss_pred             ---cccccc------ccceeeccccccccccccCCEEEEechhhcCCCccccCHHHHHHHHHHHHHHHHHHHcCCc--cH
Confidence               000000      0000011111135677789999999999999999999999999999999999999876443  34


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhhcCCCC
Q 010200          441 ASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQRL  507 (515)
Q Consensus       441 ~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~~~  507 (515)
                      ..+|+.|++.|+++...+..+...++.+....+.+...    ..+.+...+...+.++..+.|.-..
T Consensus       341 ~~aL~~Ye~~~~~~~~~~~~~~~~~y~~~~r~ds~fW~----~~~~~~~~~~~~~~f~~~~~g~~~~  403 (512)
T 3e1t_A          341 QRCFEEFERRYRREYGNFYQFLVAFYDMNQDTDSYFWS----ARKIINTEERANEAFVRLIAGRSNL  403 (512)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTCHHHH----TSSCCCSHHHHHHHHHHHHTTCCCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHH----HHhhhccCcHHHHHHHHHHcCCCCh
Confidence            78999999999999999999999888877644332211    1122333456667777777666543

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=100.00  E-value=7.9e-36  Score=303.73  Aligned_cols=338  Identities=17%  Similarity=0.162  Sum_probs=224.1

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      ++|||+|||||||||++|+.|+++    |++|+||||.+.++..         ...|..+.+.   +++.+++.......
T Consensus         3 e~yDViIVGaGpaGl~~A~~La~~----G~~V~v~Er~~~~~~~---------~~~g~~l~~~---~l~~l~~~~~~~~~   66 (397)
T 3oz2_A            3 ETYDVLVVGGGPGGSTAARYAAKY----GLKTLMIEKRPEIGSP---------VRCGEGLSKG---ILNEADIKADRSFI   66 (397)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSTTCS---------CCSCCEEETH---HHHHTTCCCCTTTE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC----CCcEEEEeCCCCCCCC---------CceecccCHH---HHHHcCCCchhhhh
Confidence            469999999999999999999996    9999999998876321         1124455543   56677764432222


Q ss_pred             hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (515)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~  213 (515)
                      .. .+....++...+.....+.. .......++.++|..+...|.+.+.+.| ++++++++|+++..             
T Consensus        67 ~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~R~~~~~~L~~~a~~~G-~~~~~~~~v~~~~~-------------  130 (397)
T 3oz2_A           67 AN-EVKGARIYGPSEKRPIILQS-EKAGNEVGYVLERDKFDKHLAALAAKAG-ADVWVKSPALGVIK-------------  130 (397)
T ss_dssp             EE-EESEEEEECTTCSSCEEEEC-SSSSCCCEEEECHHHHHHHHHHHHHHHT-CEEESSCCEEEEEE-------------
T ss_pred             hc-ccceEEEEeCCCceEeeccc-cccCCceeEEEEHHHHHHHHHHHHHhcC-cEEeeeeeeeeeee-------------
Confidence            22 45666777665544444332 2234556789999999999999999998 99999999999876             


Q ss_pred             CcccccccCCee-EEEc-CCC--cEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecC---CceEEEEe-
Q 010200          214 SATTLFTKGHLA-KLDL-SDG--TSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKE---NYCAWQRF-  285 (515)
Q Consensus       214 ~~~~~~~~~~~~-~v~~-~~g--~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-  285 (515)
                             ++..+ .+.. .++  .+++||+||+|||.+|.+|+.++.......+........+.....   .+.....+ 
T Consensus       131 -------~~~~~~~v~~~~~~~~~~~~a~~vIgAdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (397)
T 3oz2_A          131 -------ENGKVAGAKIRHNNEIVDVRAKMVIAADGFESEFGRWAGLKSVILARNDIISALQYRMINVDVDPDYTDFYLG  203 (397)
T ss_dssp             -------ETTEEEEEEEEETTEEEEEEEEEEEECCCTTCHHHHHHTCGGGCCCGGGEEEEEEEEEESCCCCTTEEEEECS
T ss_pred             -------ccceeeeeeecccccceEEEEeEEEeCCccccHHHHHcCCCcccccceeeeeeEEEEeeccccCcccceeeee
Confidence                   22222 2222 233  379999999999999999999987766655555554444443322   12222222 


Q ss_pred             --cCCCcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccc
Q 010200          286 --LPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKE  363 (515)
Q Consensus       286 --~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (515)
                        .+.++.|++|.+++..++.+........     ........+.+.+. .            .+.+..           
T Consensus       204 ~~~~~g~~~~~~~~~~~~~vg~~~~~~~~~-----~~~~~~~~l~~~~~-~------------~~~l~~-----------  254 (397)
T 3oz2_A          204 SIAPAGYIWVFPKGEGMANVGIGSSINWIH-----NRFELKNYLDRFIE-N------------HPGLKK-----------  254 (397)
T ss_dssp             TTSTTEEEEEEEEETTEEEEEEEEETTTSC-----SHHHHHHHHHHHHH-T------------CHHHHT-----------
T ss_pred             ccCCCceEEEeecccceeEEEEeeccchhh-----hhhhHHHHHHHHHH-h------------Cccccc-----------
Confidence              3678899999999888887765443221     12222222222111 0            000000           


Q ss_pred             cccCCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHH
Q 010200          364 CFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASL  443 (515)
Q Consensus       364 ~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~a  443 (515)
                           ........  ...|+. ....+|..++|+|+|||||.++|++|||+|+||+||..||+.|.++++.++.  ...+
T Consensus       255 -----~~~~~~~~--~~~~~~-~~~~~~~~~~v~lvGDAA~~~~P~~G~Gi~~A~~~g~~~A~~i~~~l~~~~~--~~~~  324 (397)
T 3oz2_A          255 -----GQDIQLVT--GGVSVS-KVKMPITMPGLMLVGDAARLIDPITGGGIANAIVSGMYAAQVTKEAIESNDY--SPQM  324 (397)
T ss_dssp             -----SEEEEEEE--EEEECC-CCCSCCEETTEEECGGGGTCSCTTTCCCHHHHHHHHHHHHHHHHHHHHHTCC--SHHH
T ss_pred             -----cceeeeee--cccccc-CcccceeeeeEEEcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHcCCc--cHHH
Confidence                 00011110  012221 1234567899999999999999999999999999999999999999987742  3789


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHhh
Q 010200          444 LKKYEAERKPANIVMMAVLDGFQKAY  469 (515)
Q Consensus       444 l~~Y~~~r~~~~~~~~~~s~~~~~~~  469 (515)
                      |+.|++.++++..+...........+
T Consensus       325 L~~Ye~~~~~~~~~~~~~~~~~~~~~  350 (397)
T 3oz2_A          325 MQKYEKLIKERFERKHLRNWVAKEKL  350 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999888776665555444443

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=100.00  E-value=9.1e-37  Score=311.52  Aligned_cols=351  Identities=19%  Similarity=0.190  Sum_probs=233.8

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCH-hHHHHHHHcCCchhhh
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTP-ATISFFKEIGAWQYVQ  131 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~l~~lgl~~~~~  131 (515)
                      +.++||+||||||+||++|+.|++.    |++|+||||.+.+..+        ..+.++.+.+ .+.++|+.+|+++.+.
T Consensus        24 ~~~~dV~IVGaG~aGl~~A~~L~~~----G~~v~v~E~~~~~~~~--------~~g~~~~~~~~~~~~~l~~~gl~~~~~   91 (398)
T 2xdo_A           24 LSDKNVAIIGGGPVGLTMAKLLQQN----GIDVSVYERDNDREAR--------IFGGTLDLHKGSGQEAMKKAGLLQTYY   91 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTT----TCEEEEEECSSSTTCC--------CCSCCEECCTTTHHHHHHHTTCHHHHH
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHC----CCCEEEEeCCCCcccc--------ccCCeeeeCCccHHHHHHhcChHHHHH
Confidence            4568999999999999999999996    9999999999866322        2234556654 5688999999999988


Q ss_pred             hhhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCC
Q 010200          132 QHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDS  211 (515)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~  211 (515)
                      .... +... .+++..+........... .......++|..|.+.|.+.+.+   ++|+++++|++++.           
T Consensus        92 ~~~~-~~~~-~~~~~~g~~~~~~~~~~~-~~~~~~~i~r~~l~~~L~~~~~~---~~i~~~~~v~~i~~-----------  154 (398)
T 2xdo_A           92 DLAL-PMGV-NIADEKGNILSTKNVKPE-NRFDNPEINRNDLRAILLNSLEN---DTVIWDRKLVMLEP-----------  154 (398)
T ss_dssp             HHCB-CCCE-EEECSSSEEEEECCCGGG-TTSSCCEECHHHHHHHHHHTSCT---TSEEESCCEEEEEE-----------
T ss_pred             Hhhc-ccce-EEECCCCCchhhcccccc-CCCCCceECHHHHHHHHHhhcCC---CEEEECCEEEEEEE-----------
Confidence            7654 3333 555544432222200110 11122468999999999988753   57899999999986           


Q ss_pred             CCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeec---C------CceEE
Q 010200          212 TPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK---E------NYCAW  282 (515)
Q Consensus       212 ~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~---~------~~~~~  282 (515)
                               +++.++|++.+|+++.+|+||+|||.+|.+|+.++... ....+..++.+.++...   +      ....+
T Consensus       155 ---------~~~~v~v~~~~g~~~~ad~vV~AdG~~S~vR~~l~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~  224 (398)
T 2xdo_A          155 ---------GKKKWTLTFENKPSETADLVILANGGMSKVRKFVTDTE-VEETGTFNIQADIHQPEINCPGFFQLCNGNRL  224 (398)
T ss_dssp             ---------CSSSEEEEETTSCCEEESEEEECSCTTCSCCTTTCCCC-CEEEEEEEEEEEESSHHHHSHHHHHHHTTSEE
T ss_pred             ---------CCCEEEEEECCCcEEecCEEEECCCcchhHHhhccCCC-ceEcceEEEEEEeCchhccCchhHhhcCCceE
Confidence                     33568899999988999999999999999999986321 11112333444443210   0      11222


Q ss_pred             EEecCCCcEEEEecCCCceEEEEEcCCCC-hHH---hhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCcc
Q 010200          283 QRFLPAGPIALLPIGDNFSNIVWTMNPKD-ASD---CKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDAT  358 (515)
Q Consensus       283 ~~~~~~g~~~~~p~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (515)
                      ..+.++..+.++|.+++..++++....+. ...   ....+.+.+.+.+.+.|. .|.+.       ..+.+..      
T Consensus       225 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~-------~~~~~~~------  290 (398)
T 2xdo_A          225 MASHQGNLLFANPNNNGALHFGISFKTPDEWKNQTQVDFQNRNSVVDFLLKEFS-DWDER-------YKELIHT------  290 (398)
T ss_dssp             EEEETTEEEEEEEEETTEEEEEEEEECCTTC---CCSCTTCHHHHHHHHHHHTT-TSCHH-------HHHHHHH------
T ss_pred             EEecCCCeEEEEeCCCCcEEEEEEEecCcccccccccCcCCHHHHHHHHHHHHc-CCChH-------HHHHHhC------
Confidence            33456666777888888777776653322 111   112356777777777665 34322       1111111      


Q ss_pred             ccccccccCCcceEEeccceeeecccccc-cccccc-C--cEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhc
Q 010200          359 LSAKECFEVPPRVVKLASERMVFPLSLKH-ANNYVS-K--RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAV  434 (515)
Q Consensus       359 ~~~~~~~~i~~~~~~~~~~~~~~p~~~~~-~~~~~~-~--~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~  434 (515)
                                      ......+++...+ ..+|.. +  ||+|+|||||.++|+.|||+|+||+||..|+++|...   
T Consensus       291 ----------------~~~~~~~~~~~~~~~~~~~~~~~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~~---  351 (398)
T 2xdo_A          291 ----------------TLSFVGLATRIFPLEKPWKSKRPLPITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADG---  351 (398)
T ss_dssp             ----------------CSCCEEEEEEECCCCSCCCSCCSSCEEECTHHHHCCCCTTSCSHHHHHHHHHHHHHHHHSC---
T ss_pred             ----------------cccceeeeeEeccCCCCcccCCCccEEEEeehhccCCCccCccHHHHHHHHHHHHHHHHhc---
Confidence                            0001112222222 246654 5  8999999999999999999999999999999999874   


Q ss_pred             CCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHH-hhcCCCChH
Q 010200          435 GADIGEASLLKKYEAERKPANIVMMAVLDGFQK-AYSVDFGPL  476 (515)
Q Consensus       435 ~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~-~~~~~~~~~  476 (515)
                      ..+. ...+|+.|+++|++++..++..+..... ++..+.++.
T Consensus       352 ~~~~-~~~~L~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~  393 (398)
T 2xdo_A          352 KFNS-IEEAVKNYEQQMFIYGKEAQEESTQNEIEMFKPDFTFQ  393 (398)
T ss_dssp             CSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCC-
T ss_pred             cCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence            2231 3789999999999999999998877664 566555443

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=100.00  E-value=2.6e-35  Score=303.08  Aligned_cols=338  Identities=12%  Similarity=0.110  Sum_probs=239.4

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      .++||+||||||+|+++|+.|++.    |++|+|+||.+.++           ...|..+.+.+..+++.+|+++.+.+.
T Consensus         4 ~~~dVvIIGgG~aGl~~A~~La~~----G~~V~v~E~~~~~~-----------~~~g~~~~~~~~~~l~~~g~~~~~~~~   68 (421)
T 3nix_A            4 EKVDVLVIGAGPAGTVAASLVNKS----GFKVKIVEKQKFPR-----------FVIGESLLPRCMEHLDEAGFLDAVKAQ   68 (421)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTT----TCCEEEECSSCSSC-----------CCSCCBCCGGGHHHHHHTTCHHHHHHT
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhC----CCCEEEEeCCCCCC-----------CcccCcccHhHHHHHHHcCChHHHHHc
Confidence            458999999999999999999996    99999999998663           133667889999999999999998887


Q ss_pred             hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (515)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~  213 (515)
                      .......+.+..........+..........++.++|..+...|.+.+.+.| ++|+++++|++++..            
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~g-v~i~~~~~v~~i~~~------------  135 (421)
T 3nix_A           69 GFQQKFGAKFVRGKEIADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQG-VDVEYEVGVTDIKFF------------  135 (421)
T ss_dssp             TCEEECEEEEEETTEEEEEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHT-CEEECSEEEEEEEEE------------
T ss_pred             CCcccCCcEEEeCCeeEEEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCC-CEEEcCCEEEEEEEe------------
Confidence            6544555555444333233332222233455789999999999999999887 999999999999860            


Q ss_pred             CcccccccCCeeEEEcCCCc--EEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCC-----c-eEE--E
Q 010200          214 SATTLFTKGHLAKLDLSDGT--SLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-----Y-CAW--Q  283 (515)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~--~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~--~  283 (515)
                            ++...+.+.+.+|+  ++.||+||+|||.+|.+|+.++.......+....++..+......     . ..+  .
T Consensus       136 ------~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~s~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (421)
T 3nix_A          136 ------GTDSVTTIEDINGNKREIEARFIIDASGYGRVIPRMFGLDKPSGFESRRTLFTHIKDVKRPVAAEMEGNRITAV  209 (421)
T ss_dssp             ------TTEEEEEEEETTSCEEEEEEEEEEECCGGGCHHHHHTTCEECCSSCCCEEEEEEEECTTCCC----CCSEEEEE
T ss_pred             ------CCEEEEEEEcCCCCEEEEEcCEEEECCCCchhhHHhcCCCCCCcCCCcEEEEEEECCCcCCCccCCCCeEEEEE
Confidence                  11233566678887  799999999999999999999887766666667777666543221     1 111  1


Q ss_pred             EecCCCcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccc
Q 010200          284 RFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKE  363 (515)
Q Consensus       284 ~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (515)
                      ...+.+++|++|.+++..++.+....+..... ..+.+++...+...++                .+...+....     
T Consensus       210 ~~~~~g~~~~~P~~~~~~~vg~~~~~~~~~~~-~~~~~~~l~~~~~~~p----------------~~~~~l~~~~-----  267 (421)
T 3nix_A          210 VHKPKVWIWVIPFSNGNTSVGFVGEPSYFDEY-TGTPEERMRAMIANEG----------------HIAERFKSEE-----  267 (421)
T ss_dssp             EEETTEEEEEEECTTSEEEEEEEECHHHHTTS-CSCHHHHHHHHHHTCT----------------TTHHHHTTCC-----
T ss_pred             eCCCCEEEEEEEECCCCEEEEEEecHHHhhhc-CCCHHHHHHHHHHhCc----------------HHHHHHhcCc-----
Confidence            22377899999999999888888755332211 2245555555544221                1111111100     


Q ss_pred             cccCCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHH
Q 010200          364 CFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASL  443 (515)
Q Consensus       364 ~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~a  443 (515)
                                .......++.......+|..+++++||||||.++|+.|||+|+|++||..|++.|.+.+..+.    ...
T Consensus       268 ----------~~~~~~~~~~~~~~~~~~~~~~v~lvGDAa~~~~P~~G~G~~~A~~~a~~la~~l~~~~~~~~----~~~  333 (421)
T 3nix_A          268 ----------FLFEPRTIEGYAISASKLYGDGFVLTGNATEFLDPIFSSGATFAMESGSKGGKLAVQFLKGEE----VNW  333 (421)
T ss_dssp             ----------BSSCCEEEECCCBEESCSEETTEEECGGGTCBCCSTTCCHHHHHHHHHHHHHHHHHHHHTTCC----CCH
T ss_pred             ----------cccCceeecccceeeeeeccCCEEEecccccccCCcccccHHHHHHHHHHHHHHHHHHhcCCc----hhH
Confidence                      001122344444456778889999999999999999999999999999999999999876542    235


Q ss_pred             HHHHHHHhhHHHHHHHHH
Q 010200          444 LKKYEAERKPANIVMMAV  461 (515)
Q Consensus       444 l~~Y~~~r~~~~~~~~~~  461 (515)
                      ++.|.+.++.........
T Consensus       334 ~~~y~~~~~~~~~~~~~~  351 (421)
T 3nix_A          334 EKDFVEHMMQGIDTFRSF  351 (421)
T ss_dssp             HHHTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            678888876655544443

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=100.00  E-value=1.7e-34  Score=299.64  Aligned_cols=335  Identities=17%  Similarity=0.160  Sum_probs=225.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      .++||+||||||+|+++|+.|++.    |++|+||||.+.+...        ....+..+   +.+.++.+|+.+.....
T Consensus         5 ~~~dVvIVGaG~aGl~aA~~La~~----G~~V~vlE~~~~~~~g--------~~~~g~~l---~~~~l~~lg~~~~~~~~   69 (453)
T 3atr_A            5 LKYDVLIIGGGFAGSSAAYQLSRR----GLKILLVDSKPWNRIG--------DKPCGDAV---SKAHFDKLGMPYPKGEE   69 (453)
T ss_dssp             EECSEEEECCSHHHHHHHHHHSSS----SCCEEEECSSCGGGTT--------CSCCCCEE---EHHHHHHTTCCCCCGGG
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHC----CCCEEEEECCCCCCCC--------cccccccc---cHHHHHHhcCCCCchHH
Confidence            468999999999999999999996    9999999998865211        01112333   46788888876543322


Q ss_pred             hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (515)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~  213 (515)
                      .......+.++...+.....+       ...++.++|..|.+.|.+.+.+.| ++|+++++|++++.             
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~r~~l~~~L~~~a~~~g-v~i~~~~~v~~i~~-------------  128 (453)
T 3atr_A           70 LENKINGIKLYSPDMQTVWTV-------NGEGFELNAPLYNQRVLKEAQDRG-VEIWDLTTAMKPIF-------------  128 (453)
T ss_dssp             EEEEEEEEEEECTTSSCEEEE-------EEEEEEECHHHHHHHHHHHHHHTT-CEEESSEEEEEEEE-------------
T ss_pred             HHhhhcceEEECCCCceEEeE-------CCCcEEEcHHHHHHHHHHHHHHcC-CEEEeCcEEEEEEE-------------
Confidence            222334455554433222221       123578999999999999999887 99999999999976             


Q ss_pred             CcccccccCCeeE-EEcC---CCc--EEEeeEEEEecCCCchhhhhcCCccc--cccC---CceEEEEEEEeecCC--ce
Q 010200          214 SATTLFTKGHLAK-LDLS---DGT--SLYAKLVVGADGGKSRVRELAGFKTT--GWSY---SQNAIICTVEHNKEN--YC  280 (515)
Q Consensus       214 ~~~~~~~~~~~~~-v~~~---~g~--~~~ad~vV~AdG~~S~vr~~l~~~~~--~~~~---~~~~~~~~~~~~~~~--~~  280 (515)
                             +++.+. |.+.   +|+  ++.||+||+|||.+|.+|+.++...+  ...+   ...++...+....+.  ..
T Consensus       129 -------~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (453)
T 3atr_A          129 -------EDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRSFRSKLPPELPITEDLDDKDADVAYREVLLTKEDIEDHD  201 (453)
T ss_dssp             -------ETTEEEEEEEEETTTTEEEEEECSEEEECCGGGCTTGGGSCTTSGGGCCCCGGGEEEEEEEEEEESSCCTTTT
T ss_pred             -------ECCEEEEEEEEEcCCCceEEEEcCEEEECcCCchhhHHhcCCCCCcccCCCcccceeeeEEEEecCCCccCCC
Confidence                   223332 4333   665  79999999999999999999976532  1111   123344444444322  22


Q ss_pred             EEEEe-----cCCCcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhcccc
Q 010200          281 AWQRF-----LPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRG  355 (515)
Q Consensus       281 ~~~~~-----~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (515)
                      ....+     .+++++|++|..++..++.+........   ....+.+.+.+.+..+ .|..              +   
T Consensus       202 ~~~~~~~~~~~~~g~~~~~P~~~~~~~vg~~~~~~~~~---~~~~~~~~~~l~~~~~-~~~~--------------~---  260 (453)
T 3atr_A          202 YLRIFIDQETSPGGYWWYFPKGKNKVNVGLGIQGGMGY---PSIHEYYKKYLDKYAP-DVDK--------------S---  260 (453)
T ss_dssp             EEEEECCTTTSTTSCEEEEEEETTEEEEEEEEESSSCC---CCHHHHHHHHHHHHCT-TEEE--------------E---
T ss_pred             eEEEEECCCCCCCcEEEEEECCCCeEEEEEEecCCCCC---CCHHHHHHHHHHhhhh-hcCC--------------C---
Confidence            22233     2678999999999888887776433210   0112344444433111 1100              0   


Q ss_pred             CccccccccccCCcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcC
Q 010200          356 DATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVG  435 (515)
Q Consensus       356 ~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~  435 (515)
                                    .+....  ....|. ....++|..++++|+|||||.++|++|||+|+||+||..|+++|.+.+..+
T Consensus       261 --------------~~~~~~--~~~~p~-~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~~~Ai~da~~la~~l~~~l~~~  323 (453)
T 3atr_A          261 --------------KLLVKG--GALVPT-RRPLYTMAWNGIIVIGDSGFTVNPVHGGGKGSAMISGYCAAKAILSAFETG  323 (453)
T ss_dssp             --------------EEEEEE--EEEEEC-SSCCSCSEETTEEECGGGGTCSCTTTCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             --------------eEEecc--ceeccC-CCCCCceecCCEEEEeCcccCCCCCccccHHHHHHHHHHHHHHHHHHHHcC
Confidence                          011111  112333 235678888999999999999999999999999999999999999887654


Q ss_pred             CCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC
Q 010200          436 ADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSV  471 (515)
Q Consensus       436 ~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~  471 (515)
                      . . ...+|+.|+++|++++...+..++.+.+++..
T Consensus       324 ~-~-~~~~L~~Y~~~r~~~~~~~~~~~~~~~~~~~~  357 (453)
T 3atr_A          324 D-F-SASGLWDMNICYVNEYGAKQASLDIFRRFLQK  357 (453)
T ss_dssp             C-C-STTTTTHHHHHHHHHTHHHHHHHHHHHHHHTT
T ss_pred             C-c-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2 2 25689999999999999999999888887654

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=100.00  E-value=5.3e-35  Score=296.68  Aligned_cols=337  Identities=13%  Similarity=0.097  Sum_probs=216.8

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCc-hh-hhhh
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAW-QY-VQQH  133 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~-~~-~~~~  133 (515)
                      +||+||||||+||++|+.|++..  +|++|+||||.+.+.          ..++++.+++++++.+...+++ +. +...
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~--~G~~V~v~E~~~~~~----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQAR--PLWAIDIVEKNDEQE----------VLGWGVVLPGRPGQHPANPLSYLDAPERLN   68 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHC--TTSEEEEECSSCTTC----------CCCSEEEEESCTTTCTTCGGGGSSCGGGGC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcC--CCCCEEEEECCCCCC----------cceeEEEeCcHHHHhhcCcchhhhhhHHHh
Confidence            48999999999999999999941  289999999998763          2345788888776622222233 33 3222


Q ss_pred             hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (515)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~  213 (515)
                      .. ....+.++.. +. .+  ..   ......+.++|..|.+.|.+.+.+.| ++|+++++|++++.             
T Consensus        69 ~~-~~~~~~~~~~-g~-~~--~~---~~~~~~~~~~r~~l~~~L~~~~~~~g-v~i~~~~~v~~i~~-------------  126 (381)
T 3c4a_A           69 PQ-FLEDFKLVHH-NE-PS--LM---STGVLLCGVERRGLVHALRDKCRSQG-IAIRFESPLLEHGE-------------  126 (381)
T ss_dssp             CE-EECCEEEEES-SS-EE--EC---CCCSCEEEEEHHHHHHHHHHHHHHTT-CEEETTCCCCSGGG-------------
T ss_pred             hc-cccceEEEeC-Ce-eE--Ee---cCCCceeeecHHHHHHHHHHHHHHCC-CEEEeCCEeccchh-------------
Confidence            22 3445555552 21 11  11   11223468999999999999999887 99999999998853             


Q ss_pred             CcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcC----CccccccCCceEEEEEEEeecCCceEEEEecCCC
Q 010200          214 SATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAG----FKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAG  289 (515)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  289 (515)
                             .           .++.+|+||+|||.+|. |+.+.    ...... +....+.+.... .+....+..+.+.|
T Consensus       127 -------~-----------~~~~ad~vV~AdG~~S~-R~~l~~~~g~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~g  185 (381)
T 3c4a_A          127 -------L-----------PLADYDLVVLANGVNHK-TAHFTEALVPQVDYG-RNKYIWYGTSQL-FDQMNLVFRTHGKD  185 (381)
T ss_dssp             -------C-----------CGGGCSEEEECCGGGGG-TCCSSGGGCCCCEEE-EEEEEEEEESSC-CSSEEEEEEEETTE
T ss_pred             -------c-----------ccccCCEEEECCCCCch-HHhhhhhcCCCcccC-CccEEEEecCCC-CCcceeeEeeCCCc
Confidence                   1           12579999999999999 99873    221110 112222222111 11212222334666


Q ss_pred             cEE--EEecCCCceEEEEEcCCCCh--HHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccc
Q 010200          290 PIA--LLPIGDNFSNIVWTMNPKDA--SDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECF  365 (515)
Q Consensus       290 ~~~--~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (515)
                      +++  ++|++++...+.+....+..  ......+.+.+.+.+.+.|. .|.+...                         
T Consensus       186 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~-------------------------  239 (381)
T 3c4a_A          186 IFIAHAYKYSDTMSTFIVECSEETYARARLGEMSEEASAEYVAKVFQ-AELGGHG-------------------------  239 (381)
T ss_dssp             EEEEEEEECSSSCEEEEEEECHHHHHHTTSSSSCHHHHHHHHHHHTH-HHHTTCC-------------------------
T ss_pred             EEEEEEEEecCCeEEEEEECCccccccCCcccCChHHHHHHHHHHhc-ccCCCch-------------------------
Confidence            654  68998877544444322111  01123456677777777665 2221100                         


Q ss_pred             cCCcceEEeccceeeecccc-ccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHH
Q 010200          366 EVPPRVVKLASERMVFPLSL-KHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLL  444 (515)
Q Consensus       366 ~i~~~~~~~~~~~~~~p~~~-~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al  444 (515)
                           ++....  ..|++.. ...++|..++|+|||||||+++|+.|||+|+||+||..|+++|...    .+  ...+|
T Consensus       240 -----l~~~~~--~~~~~~~~~~~~~~~~grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~----~~--~~~aL  306 (381)
T 3c4a_A          240 -----LVSQPG--LGWRNFMTLSHDRCHDGKLVLLGDALQSGHFSIGHGTTMAVVVAQLLVKALCTE----DG--VPAAL  306 (381)
T ss_dssp             -----CBCCTT--TCSEEEEECCCSCSEETTEEECGGGTCCCCGGGCCHHHHHHHHHHHHHHHHHHS----SS--HHHHH
T ss_pred             -----hhcCCC--cceeeeccccCCCcccCCEEEEEccccccCCCccccHHHHHHHHHHHHHHHhcc----cc--HHHHH
Confidence                 000000  0133322 3467899999999999999999999999999999999999999874    23  37899


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHhhcCC-----CChHHHHHHHHHHh
Q 010200          445 KKYEAERKPANIVMMAVLDGFQKAYSVD-----FGPLNILRAAAFHG  486 (515)
Q Consensus       445 ~~Y~~~r~~~~~~~~~~s~~~~~~~~~~-----~~~~~~~r~~~~~~  486 (515)
                      +.|+++|++++..++..++.+..++...     .++....|+..++.
T Consensus       307 ~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  353 (381)
T 3c4a_A          307 KRFEERALPLVQLFRGHADNSRVWFETVEERMHLSSAEFVQSFDARR  353 (381)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCSCC------CHHHHGGGTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhchhhhhcCCHHHHHHHHhhcc
Confidence            9999999999999999999988544331     24556678877766

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=100.00  E-value=7.2e-31  Score=276.62  Aligned_cols=363  Identities=12%  Similarity=0.090  Sum_probs=231.5

Q ss_pred             CccEEEECCCHHHHHHHHHHhc---CCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchh--
Q 010200           55 QYDVAVVGGGMVGMALACSLAS---MPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQY--  129 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~---~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~--  129 (515)
                      .+||||||||++|+++|+.|++   .    |++|+|||+...+.           .+.+..+.+....+++.+|+.+.  
T Consensus         2 ~~dVvIVGgG~aGl~~A~~La~~~~~----G~~V~lvE~~~~~~-----------~~~g~~~~~~~~~~l~~lgi~~~~~   66 (511)
T 2weu_A            2 IRSVVIVGGGTAGWMTASYLKAAFDD----RIDVTLVESGNVRR-----------IGVGEATFSTVRHFFDYLGLDEREW   66 (511)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHGG----GSEEEEEEC------------------CCEECCTTHHHHHHHHTCCHHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHhhcCC----CCEEEEEecCCCCc-----------eeeccccCcchHHHHHHcCCCHHHH
Confidence            3799999999999999999999   7    89999999986441           22367788888999999999875  


Q ss_pred             hhhhhccccceEEEEeCCC--c------c------ceee------------e----------------------cccC--
Q 010200          130 VQQHRHAYFDKMQVWDYTG--L------G------YTKY------------N----------------------ARDV--  159 (515)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~--~------~------~~~~------------~----------------------~~~~--  159 (515)
                      +..........+.+.+...  .      .      ...+            .                      ....  
T Consensus        67 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (511)
T 2weu_A           67 LPRCAGGYKLGIRFENWSEPGEYFYHPFERLRVVDGFNMAEWWLAVGDRRTSFSEACYLTHRLCEAKRAPRMLDGSLFAS  146 (511)
T ss_dssp             HHHTTCEEECEEEEESSSSTTCEEEEESCCCCEETTEEHHHHHHHHC----CHHHHHCHHHHHHHTTBCSBCTTSCBCC-
T ss_pred             HHHcCCeEeccceecCCCCCCCceEcCCCCCCCCCCCchHHHHHhccccccCcccccccccCHHHhhhhHHhHhcCCccc
Confidence            4433221111222211100  0      0      0000            0                      0000  


Q ss_pred             --C-----------C--CcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCe
Q 010200          160 --N-----------K--EILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL  224 (515)
Q Consensus       160 --~-----------~--~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (515)
                        .           .  ...++.++|..+...|.+.+.+.| ++++++ +|++++.           +       +++..
T Consensus       147 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~a~~~g-v~~~~~-~v~~i~~-----------~-------~~~~~  206 (511)
T 2weu_A          147 QVDESLGRSTLAEQRAQFPYAYHFDADEVARYLSEYAIARG-VRHVVD-DVQHVGQ-----------D-------ERGWI  206 (511)
T ss_dssp             -----CCSCCGGGCCSCCSCEEEECHHHHHHHHHHHHHHTT-CEEEEC-CEEEEEE-----------C-------TTSCE
T ss_pred             cccccccccccccCcCCCCeeEEEcHHHHHHHHHHHHHHCC-CEEEEC-eEeEEEE-----------c-------CCCCE
Confidence              0           1  345688999999999999999887 999999 9999976           0       12234


Q ss_pred             eEEEcCCCcEEEeeEEEEecCCCchhhh-hcCCccccc---cCCceEEEEEEEeecC---CceEEEEecCCCcEEEEecC
Q 010200          225 AKLDLSDGTSLYAKLVVGADGGKSRVRE-LAGFKTTGW---SYSQNAIICTVEHNKE---NYCAWQRFLPAGPIALLPIG  297 (515)
Q Consensus       225 ~~v~~~~g~~~~ad~vV~AdG~~S~vr~-~l~~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~p~~  297 (515)
                      +.|.+.+|+++.+|+||+|||.+|.+++ .++.....+   ......+...+....+   .........+.+++|++|+.
T Consensus       207 ~~v~~~~g~~~~ad~vV~A~G~~S~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~  286 (511)
T 2weu_A          207 SGVHTKQHGEISGDLFVDCTGFRGLLINQTLGGRFQSFSDVLPNNRAVALRVPRENDEDMRPYTTATAMSAGWMWTIPLF  286 (511)
T ss_dssp             EEEEESSSCEEECSEEEECCGGGCCCCCCCTCCCEEECTTTCCCCEEEEEEEECSSGGGCCSSEEEEEETTEEEEEEECS
T ss_pred             EEEEECCCCEEEcCEEEECCCcchHHHHHHhCCCCccccccCcccceEEEEeccCCCCCCCcceeceecCCCcEEEEECC
Confidence            6788888888999999999999999965 456543221   2223344444443322   22234456688999999998


Q ss_pred             CCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCcceEEeccc
Q 010200          298 DNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASE  377 (515)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  377 (515)
                      + ...+.+.....      ..+.++..+.+.+.+.  +.+..                                    ..
T Consensus       287 ~-~~~~g~~~~~~------~~~~~~~~~~l~~~~~--~~~~~------------------------------------~~  321 (511)
T 2weu_A          287 K-RDGNGYVYSDE------FISPEEAERELRSTVA--PGRDD------------------------------------LE  321 (511)
T ss_dssp             S-EEEEEEEECTT------TSCHHHHHHHHHHHHC--TTCTT------------------------------------SC
T ss_pred             C-ceEEEEEECCC------CCCHHHHHHHHHHHhC--ccccc------------------------------------cc
Confidence            7 34444433321      1345566666666552  11110                                    00


Q ss_pred             eeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHHHhhHHHHH
Q 010200          378 RMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIV  457 (515)
Q Consensus       378 ~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~~r~~~~~~  457 (515)
                      ...+++.....+++..+|++|||||||.++|+.|||+|+|++||..|+++|..    +.+  ...+|+.|++.|+++...
T Consensus       322 ~~~~~~~~~~~~~~~~~rv~liGDAAh~~~P~~g~G~~~a~~da~~La~~l~~----~~~--~~~~l~~Y~~~~~~~~~~  395 (511)
T 2weu_A          322 ANHIQMRIGRNERTWINNCVAVGLSAAFVEPLESTGIFFIQHAIEQLVKHFPG----ERW--DPVLISAYNERMAHMVDG  395 (511)
T ss_dssp             CEEEECCCEEESCSEETTEEECGGGTEECCGGGCCHHHHHHHHHHHHHHTCCC----TTC--CHHHHHHHHHHHHHHHHH
T ss_pred             ceeEEeeccccccccCCCEEEEechhhccCccccccHHHHHHHHHHHHHHhcc----CCC--CHHHHHHHHHHHHHHHHH
Confidence            00122222234566679999999999999999999999999999999999874    122  267999999999999999


Q ss_pred             HHHHHHHHHHhhcCC-CChHHHHHHHHHHhcccChhHHHHHHHHhhcCCCCC
Q 010200          458 MMAVLDGFQKAYSVD-FGPLNILRAAAFHGAQYISPLKRNIISYASGEQRLP  508 (515)
Q Consensus       458 ~~~~s~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~~~~  508 (515)
                      +.........+.... .+++...+     .+..-+.++..+-....+....+
T Consensus       396 ~~~~~~~~y~~~~r~~~~fw~~~~-----~~~~p~~l~~~~~~~~~~~~~~~  442 (511)
T 2weu_A          396 VKEFLVLHYKGAQREDTPYWKAAK-----TRAMPDGLARKLELSASHLLDEQ  442 (511)
T ss_dssp             HHHHHHHHHHHCCCCCSHHHHHHH-----HSCCCTTHHHHHHHHTTSCCCTT
T ss_pred             HHHHHHHHhhhcCCCCcHHHHhcc-----cCCCCHHHHHHHHHHHhCCCccc
Confidence            988887777765543 33444333     12222345555555544444433

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=100.00  E-value=2.3e-31  Score=280.94  Aligned_cols=336  Identities=15%  Similarity=0.128  Sum_probs=222.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHhc------------CCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHH
Q 010200           54 DQYDVAVVGGGMVGMALACSLAS------------MPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFF  121 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~------------~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l  121 (515)
                      ..+||+||||||||+++|+.|++            .    |++|+|||+...+.           .+.|..+.+++.++|
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~----G~~V~liE~~~~~~-----------~g~g~~~~p~~~~~l   70 (526)
T 2pyx_A            6 PITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSP----KLNITLIESPDVAT-----------IGVGEGTWPSMRSTL   70 (526)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSC----SCEEEEEECSSCCC-----------CCSCEECCTHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhhccccccccCCC----CCeEEEEeCCCCCC-----------cceeeechHhHHHHH
Confidence            45899999999999999999999            6    89999999976542           222788999999999


Q ss_pred             HHcCCchh--hhhhhccccceEEEEeCCC-------cc------------ceeeec------------------------
Q 010200          122 KEIGAWQY--VQQHRHAYFDKMQVWDYTG-------LG------------YTKYNA------------------------  156 (515)
Q Consensus       122 ~~lgl~~~--~~~~~~~~~~~~~~~~~~~-------~~------------~~~~~~------------------------  156 (515)
                      +.+|+.+.  +.+........+.+.+...       ..            ...+..                        
T Consensus        71 ~~lGi~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~v~~q~~~~~~  150 (526)
T 2pyx_A           71 SKIGIDENDFIRQCDASFKQGSRFINWCKDPQSNVADSYLHPFSLPHGHQELDLCPYWLPHAEQVSFAEAVCSQQVLTQL  150 (526)
T ss_dssp             HHHTCCHHHHHHHTTCEEECEEEEESCSSCCBTTBCCEEEEESSCCTTTTTCCCHHHHGGGTTTSCHHHHHCSHHHHHHT
T ss_pred             HHcCCCHHHHHHHcCCEEECCCcccCCCccccCCCCCceecCCCCCCCCCCCChhHHHHhhhhccCchhhcccccchhhh
Confidence            99999886  5544332233333332111       00            000000                        


Q ss_pred             ---------ccC-CCCcceEEechHHHHHHHHHHHhc-CCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCee
Q 010200          157 ---------RDV-NKEILGCVVENKVLHSSLLSCMQN-TEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLA  225 (515)
Q Consensus       157 ---------~~~-~~~~~~~~i~r~~l~~~L~~~~~~-~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (515)
                               ... .....++.++|..|...|.+.+++ .| ++++++ +|++++.           +       +++..+
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~a~~~~G-v~i~~~-~v~~i~~-----------~-------~~g~~~  210 (526)
T 2pyx_A          151 GLAPKSIVTAQYHFQNNYGYHLNAAKFSQLLTEHCTQKLG-VTHIRD-HVSQIIN-----------N-------QHGDIE  210 (526)
T ss_dssp             TBCSSCTTSCTTCCSSCCEEEECHHHHHHHHHHHHHHTSC-CEEEEC-CEEEEEE-----------C-------TTSCEE
T ss_pred             ccchhhhhccccCCCCCeeEEEcHHHHHHHHHHHHHhcCC-CEEEEe-EEEEEEe-----------c-------CCCcEE
Confidence                     000 112346889999999999999998 77 999999 6999976           0       112345


Q ss_pred             EEEcCCCcEEEeeEEEEecCCCchh-hhhcCCcccccc---CCceEEEEEEEeec----CCceEEEEecCCCcEEEEecC
Q 010200          226 KLDLSDGTSLYAKLVVGADGGKSRV-RELAGFKTTGWS---YSQNAIICTVEHNK----ENYCAWQRFLPAGPIALLPIG  297 (515)
Q Consensus       226 ~v~~~~g~~~~ad~vV~AdG~~S~v-r~~l~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~p~~  297 (515)
                      .|.+.+|.++.+|+||+|||.+|.+ ++.++.......   ....++...+....    ........+.+.|++|++|+.
T Consensus       211 ~v~~~~g~~i~ad~vV~AdG~~S~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~pl~  290 (526)
T 2pyx_A          211 KLITKQNGEISGQLFIDCTGAKSLLLGEHLQVPFLSQKSVLFNDRALAIQVPYSDANSPIASCTHSTAQPNGWIWDIGLP  290 (526)
T ss_dssp             EEEESSSCEEECSEEEECSGGGCCCCCCCTCCCEEECHHHHCCCEEEEEEEECSSTTCCCCSSEEEEEETTEEEEEEECS
T ss_pred             EEEECCCCEEEcCEEEECCCcchHHHHHHhCCCcccccccccCccEEEEEeeccCCCCCCCCceeEEecCCCeEEEeeCC
Confidence            6777887789999999999999999 666765543221   12234444444331    112223345678899999998


Q ss_pred             CCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCcceEEeccc
Q 010200          298 DNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASE  377 (515)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  377 (515)
                      ++.. +.+......      .+.+...+.+.+.+. .+.           +.+..                       ..
T Consensus       291 ~~~~-~~~v~~~~~------~~~~~~~~~l~~~l~-~~~-----------~~l~~-----------------------~~  328 (526)
T 2pyx_A          291 TRKG-VGYVYSSSH------TNDIDAQKTLFNYLG-VDG-----------AAADK-----------------------LE  328 (526)
T ss_dssp             SEEE-EEEEECTTT------CCHHHHHHHHHHHHT-CCH-----------HHHHH-----------------------CC
T ss_pred             CceE-EEEEecCCC------CChHHHHHHHHHHHH-hcC-----------ccccc-----------------------CC
Confidence            7533 334333221      233445555555443 110           00100                       00


Q ss_pred             eeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHHHhhHHHHH
Q 010200          378 RMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIV  457 (515)
Q Consensus       378 ~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~~r~~~~~~  457 (515)
                      ...+++.....++|..+||+|||||||.++|+.|||+|+|++||..|+++|.....     ....+++.|+++|+++...
T Consensus       329 ~~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~GqGi~~ai~da~~La~~L~~~~~-----~~~~~l~~Y~~~~~~~~~~  403 (526)
T 2pyx_A          329 PRQLAINPGYRAKCWQNNCIAIGMAAGFIEPLEASALALIEWTASTLAQQLPPNRM-----VMDTISARVNERYQQHWQQ  403 (526)
T ss_dssp             CEEEECCCEEESCSEETTEEECGGGTEECCCTTCHHHHHHHHHHHHHHHTCCSCHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEecccCccccccCCCEEEEEhhhcccCccccccHHHHHHHHHHHHHHhhhcCC-----cCHHHHHHHHHHHHHHHHH
Confidence            11233333345667789999999999999999999999999999999998863111     1267899999999999998


Q ss_pred             HHHHHHHHHHhhcC
Q 010200          458 MMAVLDGFQKAYSV  471 (515)
Q Consensus       458 ~~~~s~~~~~~~~~  471 (515)
                      +.++....+.+...
T Consensus       404 ~~~~~~~~y~~~~r  417 (526)
T 2pyx_A          404 IIDFLKLHYVISQR  417 (526)
T ss_dssp             HHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHhcCC
Confidence            88877776665443

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=100.00  E-value=6.1e-31  Score=280.08  Aligned_cols=346  Identities=11%  Similarity=0.089  Sum_probs=213.0

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcC----CCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCch
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASM----PLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQ  128 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~----~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~  128 (515)
                      .+++||+||||||+||++|+.|++.    +  +|++|+||||.+.++..         ...+..+.+++++.|  ++.  
T Consensus        33 ~~~~DVvIVGaG~aGlaaA~~La~~~~~~~--~G~~V~vlEk~~~~g~~---------~~~g~~l~~~~l~~l--l~~--   97 (584)
T 2gmh_A           33 AEEADVVIVGAGPAGLSAATRLKQLAAQHE--KDLRVCLVEKAAHIGAH---------TLSGACLDPRAFEEL--FPD--   97 (584)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHHHHTT--CCCCEEEECSSSSTTTT---------CCCCCEECTHHHHHH--CTT--
T ss_pred             ccCCCEEEECcCHHHHHHHHHHHhcccccC--CCCcEEEEeCCCCCCCc---------cccccccCHHHHHHH--HHH--
Confidence            3468999999999999999999983    1  18999999999876422         123456788777655  322  


Q ss_pred             hhhhhhcccc------ceEEEEeCCCccceeeec-cc-CCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEe
Q 010200          129 YVQQHRHAYF------DKMQVWDYTGLGYTKYNA-RD-VNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMAL  200 (515)
Q Consensus       129 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~  200 (515)
                       +.+... ++      ..+.+.....  ...++. .. .......+.++|..|.++|.+.+++.| ++|+++++|+++..
T Consensus        98 -~~~~g~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~G-v~i~~g~~v~~l~~  172 (584)
T 2gmh_A           98 -WKEKGA-PLNTPVTEDRFGILTEKY--RIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALG-VEVYPGYAAAEILF  172 (584)
T ss_dssp             -HHHHTC-CCCEECCEEEEEEECSSC--EEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTT-CEEETTCCEEEEEE
T ss_pred             -HHhcCC-ceeeeechhheeeeccCC--CccccccCccccccCCCEEEeHHHHHHHHHHHHHHcC-CEEEcCCEEEEEEE
Confidence             222222 11      1233333221  122221 01 011223578999999999999999987 99999999999986


Q ss_pred             CCCCCCcccCCCCCcccccccCCeeEEEcC---------------CCcEEEeeEEEEecCCCchhhhhc----CCccccc
Q 010200          201 LPSSSSISVDSTPSATTLFTKGHLAKLDLS---------------DGTSLYAKLVVGADGGKSRVRELA----GFKTTGW  261 (515)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---------------~g~~~~ad~vV~AdG~~S~vr~~l----~~~~~~~  261 (515)
                      ++                  ++..+.|.+.               +|.+++||+||+|||.+|.+|+.+    ++.... 
T Consensus       173 ~~------------------~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~vr~~l~~~~gl~~~~-  233 (584)
T 2gmh_A          173 HE------------------DGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANC-  233 (584)
T ss_dssp             CT------------------TSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHHHHHTTTTTTS-
T ss_pred             cC------------------CCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCchHHHHHHHHhCCCCCC-
Confidence            11                  1112224443               246899999999999999999987    443211 


Q ss_pred             cCCce--EEEEEEEeec--CC-ceEEEEe------cCCCcEEEEecC--CCceEEEEEcCCCChHHhhcCCHHHHHHHHH
Q 010200          262 SYSQN--AIICTVEHNK--EN-YCAWQRF------LPAGPIALLPIG--DNFSNIVWTMNPKDASDCKSMNEDDFVKILN  328 (515)
Q Consensus       262 ~~~~~--~~~~~~~~~~--~~-~~~~~~~------~~~g~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (515)
                      .....  .+...+..+.  .. ......+      ...+..+++|..  ++..++.|....+....  ..++.   +.+.
T Consensus       234 ~p~~~g~g~~~~~~v~~~~~~~~~~~~~~g~~~~~~~~gg~~~~~~~~~~~~~~vg~~~~~~~~~~--~~~~~---~~l~  308 (584)
T 2gmh_A          234 EPQTYGIGLKELWVIDEKKWKPGRVDHTVGWPLDRHTYGGSFLYHLNEGEPLLALGFVVGLDYQNP--YLSPF---REFQ  308 (584)
T ss_dssp             CCCCEEEEEEEEEECCGGGCCTTEEEEEEETTSCTTSCEEEEEEECCSSSCEEEEEEEEETTCCCT--TCCHH---HHHH
T ss_pred             CchhHHhhhhhheecCcccccCCeEEEEEeccccCCcCCceEEEEecCCCCeEEEEEEEecCcccc--cCChH---HHHH
Confidence            11111  2222222222  11 2222222      112346778887  78888888765433211  11221   1222


Q ss_pred             HhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCcceEEeccceeeeccccccccccccCcEEEEcccccccCC
Q 010200          329 HALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHP  408 (515)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P  408 (515)
                      +.+.     ++         .+..++...            ++.. ...+..++......++|..++++|||||||+++|
T Consensus       309 ~~~~-----~p---------~i~~~l~~~------------~~~~-~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P  361 (584)
T 2gmh_A          309 RWKH-----HP---------SIKPTLEGG------------KRIA-YGARALNEGGFQSIPKLTFPGGLLIGCSPGFMNV  361 (584)
T ss_dssp             HHTT-----ST---------TTHHHHTTC------------EEEE-EEEEEEECCGGGGCCCCEETTEEECTTTTCCCBT
T ss_pred             HHHh-----Ch---------HHHHHhCCC------------eEEE-ecceEccCCCcccCCccccCCEEEEcccccccCc
Confidence            2111     00         111111100            0111 0111123444445678889999999999999999


Q ss_pred             ccccchhhcHHHHHHHHHHHHHhHhcCC-CcchHHH---HHHHHHHhhHH-HHHHHHHHHHHHHhhcC
Q 010200          409 LAGQGVNLGFGDASTLSRIIAEGIAVGA-DIGEASL---LKKYEAERKPA-NIVMMAVLDGFQKAYSV  471 (515)
Q Consensus       409 ~~G~G~n~al~da~~La~~l~~~~~~~~-~~~~~~a---l~~Y~~~r~~~-~~~~~~~s~~~~~~~~~  471 (515)
                      +.|||+|+||+||..||+.|..+++.+. +.  ..+   |+.|+++|+++ +.+.+..++.+..+|+.
T Consensus       362 ~~GqG~~~Ai~da~~LA~~L~~~~~~g~~~~--~~a~~~L~~Ye~~r~~~~v~~~l~~~r~~~~~~~~  427 (584)
T 2gmh_A          362 PKIKGTHTAMKSGTLAAESIFNQLTSENLQS--KTIGLHVTEYEDNLKNSWVWKELYSVRNIRPSCHG  427 (584)
T ss_dssp             TTTBCHHHHHHHHHHHHHHHHHHHTCCCCCC--SSSSCCCTHHHHHHHTSHHHHHHHHTTTTTGGGGS
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHcCCcch--hhhhhhHHHHHHHHHHhHHHHHHHHHhChhHHHHH
Confidence            9999999999999999999999876442 12  343   89999999988 68888888888777754

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=99.98  E-value=6.6e-30  Score=270.70  Aligned_cols=330  Identities=13%  Similarity=0.124  Sum_probs=216.8

Q ss_pred             CCccEEEECCCHHHHHHHHHHhc---CCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHH-HHHHcCCchh
Q 010200           54 DQYDVAVVGGGMVGMALACSLAS---MPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATIS-FFKEIGAWQY  129 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~---~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~l~~lgl~~~  129 (515)
                      ..+||+|||||++|+++|+.|++   .    |++|+|||+...+.           .+.+..+.+.... +++.+|+.+.
T Consensus         4 ~~~dVvIVGgG~aGl~aA~~La~~~~~----G~~V~liE~~~~~~-----------~~~g~~~~~~~~~~~l~~lG~~~~   68 (538)
T 2aqj_A            4 PIKNIVIVGGGTAGWMAASYLVRALQQ----QANITLIESAAIPR-----------IGVGEATIPSLQKVFFDFLGIPER   68 (538)
T ss_dssp             BCCEEEEECCSHHHHHHHHHHHHHCCS----SCEEEEEECSSSCC-----------CCSCEECCTHHHHHTHHHHTCCHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhcCC----CCEEEEECCCCCCC-----------cCCCcccchhHHHHHHHHhCCCHH
Confidence            45899999999999999999999   7    89999999976441           1226778889999 9999998765


Q ss_pred             --hhhhhccccceEEEEeCC---------------Ccc----ceeee-----cc----cCC-------------------
Q 010200          130 --VQQHRHAYFDKMQVWDYT---------------GLG----YTKYN-----AR----DVN-------------------  160 (515)
Q Consensus       130 --~~~~~~~~~~~~~~~~~~---------------~~~----~~~~~-----~~----~~~-------------------  160 (515)
                        +..........+.+....               +..    ...+.     ..    ...                   
T Consensus        69 ~~~~~~~~~~~~g~~~~~w~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  148 (538)
T 2aqj_A           69 EWMPQVNGAFKAAIKFVNWRKSPDPSRDDHFYHLFGNVPNCDGVPLTHYWLRKREQGFQQPMEYACYPQPGALDGKLAPC  148 (538)
T ss_dssp             HHGGGGTCEEECEEEEESCSSSCCTTSCCEEEEESSCCCEETTEEHHHHHHHHHHTTCCSCHHHHHCSCHHHHHTTBCSB
T ss_pred             HHHHhcCchhhCCccccCcCcccccCCCCceECCCCccCccccCchhHHHHHhcccccccCccccccccccHhhhccchH
Confidence              333221111122221111               100    00000     00    000                   


Q ss_pred             ------CCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcE
Q 010200          161 ------KEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTS  234 (515)
Q Consensus       161 ------~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~  234 (515)
                            ....++.+++..+...|.+.+.+.| ++++++ +|++++.           +       +++..+.|.+.+|++
T Consensus       149 ~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~g-v~~~~~-~v~~i~~-----------~-------~~g~~~~v~~~~g~~  208 (538)
T 2aqj_A          149 LSDGTRQMSHAWHFDAHLVADFLKRWAVERG-VNRVVD-EVVDVRL-----------N-------NRGYISNLLTKEGRT  208 (538)
T ss_dssp             CTTCCBCSCCEEEECHHHHHHHHHHHHHHTT-CEEEEC-CEEEEEE-----------C-------TTSCEEEEEETTSCE
T ss_pred             hhcCCcCCCccEEEeHHHHHHHHHHHHHHCC-CEEEEe-eEeEEEE-----------c-------CCCcEEEEEECCCcE
Confidence                  1234688999999999999999887 999999 8999976           0       122346788888888


Q ss_pred             EEeeEEEEecCCCchhhhh-cCCcccccc---CCceEEEEEEEeec----CCceEEEEecCCCcEEEEecCCCceEEEEE
Q 010200          235 LYAKLVVGADGGKSRVREL-AGFKTTGWS---YSQNAIICTVEHNK----ENYCAWQRFLPAGPIALLPIGDNFSNIVWT  306 (515)
Q Consensus       235 ~~ad~vV~AdG~~S~vr~~-l~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~  306 (515)
                      +.+|+||+|||.+|.+|+. ++.....+.   ....++...+....    ........+.+.|++|++|+.++ ..+.+.
T Consensus       209 i~ad~vV~A~G~~s~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~-~~~g~v  287 (538)
T 2aqj_A          209 LEADLFIDCSGMRGLLINQALKEPFIDMSDYLLCDSAVASAVPNDDARDGVEPYTSSIAMNSGWTWKIPMLGR-FGSGYV  287 (538)
T ss_dssp             ECCSEEEECCGGGCCCCCCCTCCCEEECTTTCCCCEEEEEEEECCHHHHCCCSSEEEEECSSEEEEEEEETTE-EEEEEE
T ss_pred             EEeCEEEECCCCchhhHHHHhCCCccccccccccceEEEEecccCCcccCCCCceeeeecCCceEEEecCCCc-eEEEEE
Confidence            9999999999999999654 455432222   12233433443321    11222334568889999999874 333443


Q ss_pred             cCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCcceEEeccceeeeccccc
Q 010200          307 MNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLK  386 (515)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~  386 (515)
                      ....      ..+++...+.+.+.+. .  +. .                          .         ....+++...
T Consensus       288 ~~~~------~~~~~~~~~~l~~~~~-~--~~-~--------------------------~---------~~~~~~~~~~  322 (538)
T 2aqj_A          288 FSSH------FTSRDQATADFLKLWG-L--SD-N--------------------------Q---------PLNQIKFRVG  322 (538)
T ss_dssp             ECTT------TSCHHHHHHHHHHHHT-C--CT-T--------------------------C---------CCEEEECCCE
T ss_pred             EcCC------CCChHHHHHHHHHHhc-C--CC-C--------------------------C---------CceEEeeccc
Confidence            3221      1245566666766554 1  00 0                          0         0001233333


Q ss_pred             cccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 010200          387 HANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQ  466 (515)
Q Consensus       387 ~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~~r~~~~~~~~~~s~~~~  466 (515)
                      ..++|..++|+|||||||+++|+.|||+|+|++||..|+++|..    +..  ...+|+.|++.|+++...+.......+
T Consensus       323 ~~~~~~~grvvliGDAAh~~~P~~gqG~~~a~~da~~La~~L~~----~~~--~~~~l~~Y~~~~~~~~~~~~~~~~~~y  396 (538)
T 2aqj_A          323 RNKRAWVNNCVSIGLSSCFLEPLESTGIYFIYAALYQLVKHFPD----TSF--DPRLSDAFNAEIVHMFDDCRDFVQAHY  396 (538)
T ss_dssp             EESCSEETTEEECGGGTEECCGGGSCHHHHHHHHHHHHHHTCCB----TTC--CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccCCEEEEcccccccCcchhccHHHHHHHHHHHHHHhhc----cCC--CHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            35567789999999999999999999999999999999988763    222  267899999999999888887766666


Q ss_pred             Hhhc
Q 010200          467 KAYS  470 (515)
Q Consensus       467 ~~~~  470 (515)
                      ..-.
T Consensus       397 ~~~~  400 (538)
T 2aqj_A          397 FTTS  400 (538)
T ss_dssp             HTCC
T ss_pred             cccC
Confidence            5433

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=99.98  E-value=1.5e-29  Score=268.34  Aligned_cols=360  Identities=12%  Similarity=0.127  Sum_probs=230.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHhc---CCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHH-HHHHcCCchh
Q 010200           54 DQYDVAVVGGGMVGMALACSLAS---MPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATIS-FFKEIGAWQY  129 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~---~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~l~~lgl~~~  129 (515)
                      ..+||||||||++|+++|+.|++   .    |++|+|||+.+.+.           .+.|..+.+.+.+ +++.+|+.+.
T Consensus        24 ~~~dVvIVGgG~aGl~aA~~La~~~~~----G~~V~liE~~~~~~-----------~~~g~~~~p~~~~~~l~~lGi~~~   88 (550)
T 2e4g_A           24 KIDKILIVGGGTAGWMAASYLGKALQG----TADITLLQAPDIPT-----------LGVGEATIPNLQTAFFDFLGIPED   88 (550)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTTT----SSEEEEEECCCCCC-----------CCCCEECCTHHHHHTHHHHTCCHH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCC----CCcEEEEeCCCCCc-----------cceeeeechhHHHHHHHHhCCChH
Confidence            46899999999999999999999   6    89999999976541           2236788899999 9999999876


Q ss_pred             --hhhhhccccceEEEEeCCCc-------------c-ce--eee-----------------------c------------
Q 010200          130 --VQQHRHAYFDKMQVWDYTGL-------------G-YT--KYN-----------------------A------------  156 (515)
Q Consensus       130 --~~~~~~~~~~~~~~~~~~~~-------------~-~~--~~~-----------------------~------------  156 (515)
                        +..........+.+......             . ..  .+.                       .            
T Consensus        89 ~~~~~~~~~~~~g~~~~~w~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~  168 (550)
T 2e4g_A           89 EWMRECNASYKVAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPV  168 (550)
T ss_dssp             HHHHHTTCEEECEEEEESSSSCCCCCSSCCEETTEESEEEEESSCCCEETTEEHHHHHHHHHHTTSCCCCHHHHHCSHHH
T ss_pred             HHHHhcCCeEEEeeeEeecccccccccccccccCCCCeeEecCCccCCCCcccHHHHHHhhcccccccccccccccchhh
Confidence              44332211122222211110             0 00  000                       0            


Q ss_pred             -ccC-------C---CCcceEEechHHHHHHHHHHHhcC-CCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCe
Q 010200          157 -RDV-------N---KEILGCVVENKVLHSSLLSCMQNT-EFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL  224 (515)
Q Consensus       157 -~~~-------~---~~~~~~~i~r~~l~~~L~~~~~~~-g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (515)
                       ...       .   ....++.+++..+...|.+.+++. | ++++++ +|++++..                  +++..
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~G-v~i~~~-~V~~i~~~------------------~~g~~  228 (550)
T 2e4g_A          169 ILDANRSPRRLDGSKVTNYAWHFDAHLVADFLRRFATEKLG-VRHVED-RVEHVQRD------------------ANGNI  228 (550)
T ss_dssp             HHHTTBCSBCTTSCBCSCCEEEECHHHHHHHHHHHHHHHSC-CEEEEC-CEEEEEEC------------------TTSCE
T ss_pred             HHHhhhhhHhhcCCCCCCcceEEcHHHHHHHHHHHHHhcCC-cEEEEC-eEeEEEEc------------------CCCCE
Confidence             000       0   123467899999999999999988 7 999999 99999760                  12234


Q ss_pred             eEEEcCCCcEEEeeEEEEecCCCchh-hhhcCCcccccc---CCceEEEEEEEeec----CCceEEEEecCCCcEEEEec
Q 010200          225 AKLDLSDGTSLYAKLVVGADGGKSRV-RELAGFKTTGWS---YSQNAIICTVEHNK----ENYCAWQRFLPAGPIALLPI  296 (515)
Q Consensus       225 ~~v~~~~g~~~~ad~vV~AdG~~S~v-r~~l~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~p~  296 (515)
                      +.|.+.+|+++.||+||+|||.+|.+ ++.++.....+.   .....+...+....    ..........+.+++|++|+
T Consensus       229 ~~v~~~~G~~i~ad~vI~A~G~~S~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ipl  308 (550)
T 2e4g_A          229 ESVRTATGRVFDADLFVDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQVPHDDDANGVEPFTSAIAMKSGWTWKIPM  308 (550)
T ss_dssp             EEEEETTSCEEECSEEEECCGGGCCCCCCCTCCCEEECTTTCCCCEEEEEEEECCHHHHCCCSSEEEEECSSEEEEEEEC
T ss_pred             EEEEECCCCEEECCEEEECCCCchhhHHHHhCCCcccccccccccceEEEeecccCCcccCCCceeeeecCCceEEEccC
Confidence            67888888889999999999999999 555665432221   12223333333221    11222333457889999998


Q ss_pred             CCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCcceEEecc
Q 010200          297 GDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLAS  376 (515)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  376 (515)
                      ++. ..+.+.....      ..+.++..+.+.+.+. .   .+.         +..                ..      
T Consensus       309 ~~~-~~~g~v~~~~------~~~~~~~~~~l~~~~~-~---~p~---------l~~----------------~~------  346 (550)
T 2e4g_A          309 LGR-FGTGYVYSSR------FATEDEAVREFCEMWH-L---DPE---------TQP----------------LN------  346 (550)
T ss_dssp             SSE-EEEEEEECTT------TSCHHHHHHHHHHHTT-C---CTT---------TSC----------------CE------
T ss_pred             CCc-cceEEEEecC------CCChHHHHHHHHHhhC-c---Ccc---------cCC----------------Cc------
Confidence            773 3333333221      1245566666666543 1   100         000                00      


Q ss_pred             ceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHHHhhHHHH
Q 010200          377 ERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANI  456 (515)
Q Consensus       377 ~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~~r~~~~~  456 (515)
                         .+++.....+++..+++++||||||+++|+.|||+|+|++||..|+++|..    +..  ...+++.|++.|+++..
T Consensus       347 ---~i~~~~~~~~~~~~~rvvliGDAAh~~~P~~GqGi~~a~~da~~La~~L~~----~~~--~~~~l~~Y~~~~~~~~~  417 (550)
T 2e4g_A          347 ---RIRFRVGRNRRAWVGNCVSIGTSSCFVEPLESTGIYFVYAALYQLVKHFPD----KSL--NPVLTARFNREIETMFD  417 (550)
T ss_dssp             ---EEECCCEEESCSEETTEEECSTTTEECCGGGSCHHHHHHHHHHHHHHTCCC----TTC--CHHHHHHHHHHHHHHHH
T ss_pred             ---eEEecCCCccccccCCEEEEehhhcccCccchhhHHHHHHHHHHHHHhccc----cCC--CHHHHHHHHHHHHHHHH
Confidence               112222234556678999999999999999999999999999999988763    212  37899999999999999


Q ss_pred             HHHHHHHHHHHhhcCC-CChHHHHHHHHHHhcccChhHHHHHHHHhhcC
Q 010200          457 VMMAVLDGFQKAYSVD-FGPLNILRAAAFHGAQYISPLKRNIISYASGE  504 (515)
Q Consensus       457 ~~~~~s~~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~  504 (515)
                      .+..+....+.+-... .+++...+     .+..-+.+++.+.....+.
T Consensus       418 ~i~~~~~~~y~~~~r~~~~fw~~~~-----~~~~p~~l~~~~~~~~~~~  461 (550)
T 2e4g_A          418 DTRDFIQAHFYFSPRTDTPFWRANK-----ELRLADGMQEKIDMYRAGM  461 (550)
T ss_dssp             HHHHHHHHHHHTCCCCSSHHHHHHT-----TSCCCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhcCCCChHHHHHhh-----cCCCCHHHHHHHHHHHhcC
Confidence            9999888887765443 33433322     1222234555555444443

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=99.96  E-value=1.5e-28  Score=252.88  Aligned_cols=369  Identities=12%  Similarity=0.074  Sum_probs=213.4

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCC--chhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGA--WQYVQ  131 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl--~~~~~  131 (515)
                      +.+||+||||||+||++|+.|++.    |++|+||||.+.+....     + ....+..+...++..++.+|+  |... 
T Consensus        21 m~~~ViIVGaGpaGl~~A~~La~~----G~~V~viE~~~~~~~~~-----g-~~~~~~~~~~~~~~~~~~lg~~~~~~~-   89 (430)
T 3ihm_A           21 MKKRIGIVGAGTAGLHLGLFLRQH----DVDVTVYTDRKPDEYSG-----L-RLLNTVAHNAVTVQREVALDVNEWPSE-   89 (430)
T ss_dssp             --CEEEEECCHHHHHHHHHHHHHT----TCEEEEEESCCGGGSTT-----S-CCCCCCCBCHHHHHHHHHTTCCCSCHH-
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHC----CCeEEEEcCCChHhhcc-----c-ccccchhccchhhhhhhhcChhhhhhh-
Confidence            457999999999999999999996    99999999987432111     0 111123456677778888865  3221 


Q ss_pred             hhhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCC-eeEEEEeCCCCCCcccC
Q 010200          132 QHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPS-RLTSMALLPSSSSISVD  210 (515)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~-~v~~i~~~~~~~~~~~~  210 (515)
                         ...+..+.++..... ...+...   ....++.+++..+...|.+.+.+.| ++++++. .+.+++.          
T Consensus        90 ---~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~v~~~~l~~~L~~~~~~~G-v~v~~~~v~~~~l~~----------  151 (430)
T 3ihm_A           90 ---EFGYFGHYYYVGGPQ-PMRFYGD---LKAPSRAVDYRLYQPMLMRALEARG-GKFCYDAVSAEDLEG----------  151 (430)
T ss_dssp             ---HHCEEEEEEEECSSS-CEEEEEE---EEEEEBEECHHHHHHHHHHHHHHTT-CEEEECCCCGGGHHH----------
T ss_pred             ---cccccceeEEECCCC-ccccchh---cCCcceeecHHHHHHHHHHHHHHcC-CEEEEEecchhhhhh----------
Confidence               124455555544332 2222211   1234577899999999999999988 8887632 1122211          


Q ss_pred             CCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcC-CccccccCCceEEE-EEEEe---ecCCceEEEEe
Q 010200          211 STPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAG-FKTTGWSYSQNAII-CTVEH---NKENYCAWQRF  285 (515)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~-~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~  285 (515)
                                    .        ...+|+||+|||.+|.+|.... .......+...... ..+..   +......+..+
T Consensus       152 --------------~--------~~~ad~VV~AdG~~S~~~~~~~~~~~~~~~~p~r~~~~~~~~g~~~~~~~~~~~~~~  209 (430)
T 3ihm_A          152 --------------L--------SEQYDLLVVCTGKYALGKVFEKQSENSPFEKPQRALCVGLFKGIKEAPIRAVTMSFS  209 (430)
T ss_dssp             --------------H--------HTTSSEEEECCCCTTGGGGSCBCGGGCCCSSCSSEEEEEEEESBCCCSSCCEEEEEE
T ss_pred             --------------h--------cccCCEEEECCCCcchHHhccCCCCCCcccCCCeeEEEEEEccCCCCCcCeeeeeec
Confidence                          0        1248999999999999875431 11122222322222 22211   11123455556


Q ss_pred             cCCCcEEEEecC--CCceE--EEEEcCCCChHHhhcC----CHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCc
Q 010200          286 LPAGPIALLPIG--DNFSN--IVWTMNPKDASDCKSM----NEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDA  357 (515)
Q Consensus       286 ~~~g~~~~~p~~--~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (515)
                      ...|.++++|..  ++..+  ++|..+..........    +++++++.+.+.|. .|.+.           +...+...
T Consensus       210 ~~~G~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----------~~~~~~~~  277 (430)
T 3ihm_A          210 PGHGELIEIPTLSFNGMSTALVLENHIGSDLEVLAHTKYDDDPRAFLDLMLEKLG-KHHPS-----------VAERIDPA  277 (430)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEEEECTTSSSGGGGTSCTTTCHHHHHHHHHHHHH-HHCHH-----------HHTTBCTT
T ss_pred             CCCcceEEecccCCCcceEEEEEEecCCCcHHHhccccCCCCHHHHHHHHHHHHH-HhCcc-----------HHHHHhhc
Confidence            666888888863  23333  3444443333333333    67777777666554 22211           11111100


Q ss_pred             cccccccccCCcceEEeccceeeeccccccccccccCcEEE-EcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCC
Q 010200          358 TLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVL-IGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGA  436 (515)
Q Consensus       358 ~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~l-vGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~  436 (515)
                      .+..   ...+..+..    ...+|+...+..+|..++++| +|||||+++|+.|||+|+||+||..|+++|...   + 
T Consensus       278 ~~~~---~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~ll~GDAah~~~p~~g~G~~~a~~da~~l~~~l~~~---~-  346 (430)
T 3ihm_A          278 EFDL---ANSSLDILQ----GGVVPAFRDGHATLNNGKTIIGLGDIQATVDPVLGQGANMASYAAWILGEEILAH---S-  346 (430)
T ss_dssp             TCEE---SSSTTSEEE----ECCCCEEBCSEEECTTSCEEEECGGGTEECCGGGCCHHHHHHHHHHHHHHHHHHC---S-
T ss_pred             hhcc---ccCccceee----cceeecccccccccCCCCEEEEecCccccCCCchhhhHHHHHHHHHHHHHHHHhc---C-
Confidence            0000   000000000    012454455667888899998 999999999999999999999999999999984   2 


Q ss_pred             CcchHHHHHHHHHHhh-HHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHHhh
Q 010200          437 DIGEASLLKKYEAERK-PANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYAS  502 (515)
Q Consensus       437 ~~~~~~al~~Y~~~r~-~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~  502 (515)
                      +.  ..+|..|+.+|+ +++....+.++.+..-...+...   + ..++..+...|.+.+.+...++
T Consensus       347 ~~--~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~  407 (430)
T 3ihm_A          347 VY--DLRFSEHLERRRQDRVLCATRWTNFTLSALSALPPE---F-LAFLQILSQSREMADEFTDNFN  407 (430)
T ss_dssp             CC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH---H-HHHHHHHHHCHHHHHHHHHGGG
T ss_pred             CH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHH---H-HHHHHHHhhCHHHHHHHHHhCC
Confidence            33  789999999988 66777766666654321112211   1 2233334445666666665544

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.90  E-value=1.4e-22  Score=211.77  Aligned_cols=314  Identities=18%  Similarity=0.171  Sum_probs=183.8

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhh
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (515)
                      ...+||+||||||+||++|+.|++.    |++|+|||+.+.++           ..+...+.+.+.+.|..+|+++....
T Consensus        90 ~~~~dVvIVGgG~aGl~aA~~La~~----G~~V~liEk~~~~g-----------~~~~~~~~~~~~~~l~~~g~~~~~~~  154 (497)
T 2bry_A           90 CTNTKCLVVGAGPCGLRAAVELALL----GARVVLVEKRIKFS-----------RHNVLHLWPFTIHDLRALGAKKFYGR  154 (497)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHT----TCEEEEEESCSSCC-----------CCCEEECCHHHHHHHHTTTHHHHCTT
T ss_pred             cCCCCEEEECccHHHHHHHHHHHHC----CCeEEEEEeccccC-----------CCCcccCChhHHHHHHHcCCcccccc
Confidence            4568999999999999999999996    99999999998662           12456788899999988887543110


Q ss_pred             hhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCC
Q 010200          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (515)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~  212 (515)
                           +.                .    ..  ...+++..+...|.+.+++.| ++|+++++|++++.         ++ 
T Consensus       155 -----~~----------------~----~~--~~~~~~~~l~~~L~~~~~~~g-v~v~~~~~v~~i~~---------~~-  196 (497)
T 2bry_A          155 -----FC----------------T----GT--LDHISIRQLQLLLLKVALLLG-VEIHWGVKFTGLQP---------PP-  196 (497)
T ss_dssp             -----TT----------------C----TT--CCEEEHHHHHHHHHHHHHHTT-CEEEESCEEEEEEC---------CC-
T ss_pred             -----cc----------------c----cc--cccCCHHHHHHHHHHHHHhCC-CEEEeCCEEEEEEE---------ec-
Confidence                 00                0    00  124678899999999999887 99999999999975         10 


Q ss_pred             CCcccccccCCeeEEEc--C-CC--cEEEeeEEEEecCCCchhhhhcCCcccccc-CCceEEEEEE-Eeec----C-Cce
Q 010200          213 PSATTLFTKGHLAKLDL--S-DG--TSLYAKLVVGADGGKSRVRELAGFKTTGWS-YSQNAIICTV-EHNK----E-NYC  280 (515)
Q Consensus       213 ~~~~~~~~~~~~~~v~~--~-~g--~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~-~~~~~~~~~~-~~~~----~-~~~  280 (515)
                      .       ++..+.|.+  . +|  .++.+|+||+|||.+|.+|+..+....+.. +........+ ....    + ...
T Consensus       197 ~-------~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~r~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~G~  269 (497)
T 2bry_A          197 R-------KGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVPEGFTIREMRGKLAIGITANFVNGRTVEETQVPEISGV  269 (497)
T ss_dssp             S-------TTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCCTTCEEEEEECSCCEEEEEEEECCCCHHHHTSCCBCC-
T ss_pred             C-------CCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcccccccchhhcCceeEeeeeeeeeeccccccchhhcCce
Confidence            0       123455655  4 56  479999999999999999987755443332 1222111111 0000    0 011


Q ss_pred             EEE---EecC-----CC-cE-EEEecCCCceEEEEEc-------------CCCChHHhh---cCCHHHHHHHH--HHhhc
Q 010200          281 AWQ---RFLP-----AG-PI-ALLPIGDNFSNIVWTM-------------NPKDASDCK---SMNEDDFVKIL--NHALD  332 (515)
Q Consensus       281 ~~~---~~~~-----~g-~~-~~~p~~~~~~~~~~~~-------------~~~~~~~~~---~~~~~~~~~~~--~~~~~  332 (515)
                      .+.   .+.+     .| .. .++|.+++...++...             .........   ..+...+....  ...|.
T Consensus       270 ~~~~~~~~f~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  349 (497)
T 2bry_A          270 ARIYNQKFFQSLLKATGIDLENIVYYKDETHYFVMTAKKQCLLRLGVLRQDLSETDQLLGKANVVPEALQRFARAAADFA  349 (497)
T ss_dssp             ---CCSSHHHHHHHHHCCCEEEEEEEESSEEEEEEEECHHHHHHTTSBSSCCSSHHHHTSTTTBCHHHHHHHHHHHHHHH
T ss_pred             EEecChhhhHhHHhhcCCCcccccccCCCeEEEEeccccccccccceeeccccchHhhhhhccCCHHHHHHhhccccccc
Confidence            110   0000     11 11 1344444433222211             111111111   11223332111  11111


Q ss_pred             CCCCCCCCCCCCCcccchh---ccccCccccccccccCCcceEEe--ccceeeeccccccccccccCc-EEEEccccc-c
Q 010200          333 YGYGPHPKSISSGSVDMFS---WFRGDATLSAKECFEVPPRVVKL--ASERMVFPLSLKHANNYVSKR-VVLIGDAAH-T  405 (515)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~p~~~~~~~~~~~~~-v~lvGDAAh-~  405 (515)
                      ....          .+.+.   ..++             +....+  ......|++..+.+.+|..|+ ++|+||||| .
T Consensus       350 ~~~~----------~~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~~~~r~a~~~~~gRr~~l~Gda~~~~  406 (497)
T 2bry_A          350 THGK----------LGKLEFAQDARG-------------RPDVAAFDFTSMMRAESSARVQEKHGARLLLGLVGDCLVEP  406 (497)
T ss_dssp             TTTT----------TCSCCBCBCTTS-------------SBCEEEEECSEEEEESCSEEEEEETTEEEEEEECGGGTBCC
T ss_pred             hhhc----------cccchhhhhccC-------------CCCCceeeeEEEEecchhhHHHHhcCCcccceEeccccccC
Confidence            0000          00011   1111             101111  223445888888899999998 999999999 4


Q ss_pred             cCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHHHhhHHHHH
Q 010200          406 VHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIV  457 (515)
Q Consensus       406 ~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~~r~~~~~~  457 (515)
                      +.| .|||+|++|+||..|++.|...++.. .  ..+.|    .+|++.++.
T Consensus       407 ~~p-~g~G~n~g~~~a~~l~~~l~~~~~g~-~--~~~~l----~~r~~~~~~  450 (497)
T 2bry_A          407 FWP-LGTGVARGFLAAFDAAWMVKRWAEGA-G--PLEVL----AERESLYQL  450 (497)
T ss_dssp             CGG-GCCHHHHHHHHHHHHHHHHHHHHTTC-C--HHHHH----HHHHHHHTT
T ss_pred             cCc-cccchhhHHHHHHHHHHHHHHHhCCC-C--ccchh----hhHHHHhhh
Confidence            555 99999999999999999999985432 2  24455    566654443

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.65  E-value=1.3e-15  Score=153.82  Aligned_cols=193  Identities=13%  Similarity=0.071  Sum_probs=111.1

Q ss_pred             EEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecC
Q 010200          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADG  245 (515)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG  245 (515)
                      ..++...+...|.+.+++.| ++++++++|++++.                    +++.+.|.+.+| ++.+|.||.|+|
T Consensus       159 ~~~~~~~~~~~l~~~~~~~g-~~i~~~~~v~~i~~--------------------~~~~~~v~~~~g-~~~a~~vV~A~G  216 (382)
T 1ryi_A          159 VHVEPYFVCKAYVKAAKMLG-AEIFEHTPVLHVER--------------------DGEALFIKTPSG-DVWANHVVVASG  216 (382)
T ss_dssp             CBCCHHHHHHHHHHHHHHTT-CEEETTCCCCEEEC--------------------SSSSEEEEETTE-EEEEEEEEECCG
T ss_pred             eEEcHHHHHHHHHHHHHHCC-CEEEcCCcEEEEEE--------------------ECCEEEEEcCCc-eEEcCEEEECCC
Confidence            34667899999999999988 99999999999976                    234467777777 799999999999


Q ss_pred             CCch-hhhhcCCccccccCCceEEEEEEEeecCC-ceEEEEecCCCcEEEEecCCCceEEEEEcCCCChHHhhcCCH---
Q 010200          246 GKSR-VRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNE---  320 (515)
Q Consensus       246 ~~S~-vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~---  320 (515)
                      .+|. +.+.++......  ........+...... ...  .+  ....+++|..++...+........  .....+.   
T Consensus       217 ~~s~~l~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~--~~--~~~~~~~p~~~g~~~vG~~~~~~~--~~~~~~~~~~  288 (382)
T 1ryi_A          217 VWSGMFFKQLGLNNAFL--PVKGECLSVWNDDIPLTKT--LY--HDHCYIVPRKSGRLVVGATMKPGD--WSETPDLGGL  288 (382)
T ss_dssp             GGTHHHHHHTTCCCCCE--EEEEEEEEEECCSSCCCSE--EE--ETTEEEEECTTSEEEEECCCEETC--CCCSCCHHHH
T ss_pred             hhHHHHHHhcCCCCcee--ccceEEEEECCCCCCccce--EE--cCCEEEEEcCCCeEEEeecccccC--CCCCCCHHHH
Confidence            9987 777765432211  112222223222111 111  12  236788888776544433211111  0011222   


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCcceEEeccceeeeccccccccccccCcEEEEc
Q 010200          321 DDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIG  400 (515)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvG  400 (515)
                      +.+.+.+.+.++ .               +..                   ..+...+..       ...+..++..++|
T Consensus       289 ~~l~~~~~~~~p-~---------------l~~-------------------~~~~~~w~g-------~~~~t~d~~p~ig  326 (382)
T 1ryi_A          289 ESVMKKAKTMLP-A---------------IQN-------------------MKVDRFWAG-------LRPGTKDGKPYIG  326 (382)
T ss_dssp             HHHHHHHHHHCG-G---------------GGG-------------------SEEEEEEEE-------EEEECSSSCCEEE
T ss_pred             HHHHHHHHHhCC-C---------------cCC-------------------CceeeEEEE-------ecccCCCCCcEec
Confidence            233334444332 0               000                   000000000       0112234566677


Q ss_pred             ccc-----cccCCccccchhhcHHHHHHHHHHHHH
Q 010200          401 DAA-----HTVHPLAGQGVNLGFGDASTLSRIIAE  430 (515)
Q Consensus       401 DAA-----h~~~P~~G~G~n~al~da~~La~~l~~  430 (515)
                      ++.     ....++.|.|+.+|...|..|++.|..
T Consensus       327 ~~~~~~~l~~~~G~~g~G~~~a~~~g~~la~~i~~  361 (382)
T 1ryi_A          327 RHPEDSRILFAAGHFRNGILLAPATGALISDLIMN  361 (382)
T ss_dssp             EETTEEEEEEEECCSSCTTTTHHHHHHHHHHHHTT
T ss_pred             cCCCcCCEEEEEcCCcchHHHhHHHHHHHHHHHhC
Confidence            653     446778999999999999999988865

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.61  E-value=4.9e-14  Score=143.33  Aligned_cols=117  Identities=12%  Similarity=0.055  Sum_probs=76.8

Q ss_pred             EechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCC
Q 010200          167 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGG  246 (515)
Q Consensus       167 ~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~  246 (515)
                      .++...+...|.+.+++.| ++++++++|++++.                   +.+..+.|.+.+| ++.+|.||.|+|.
T Consensus       170 ~~~~~~~~~~l~~~~~~~g-~~i~~~~~v~~i~~-------------------~~~~~~~v~~~~g-~~~a~~vV~a~G~  228 (405)
T 2gag_B          170 IAKHDHVAWAFARKANEMG-VDIIQNCEVTGFIK-------------------DGEKVTGVKTTRG-TIHAGKVALAGAG  228 (405)
T ss_dssp             BCCHHHHHHHHHHHHHHTT-CEEECSCCEEEEEE-------------------SSSBEEEEEETTC-CEEEEEEEECCGG
T ss_pred             cCCHHHHHHHHHHHHHHCC-CEEEcCCeEEEEEE-------------------eCCEEEEEEeCCc-eEECCEEEECCch
Confidence            4566789999999999988 99999999999976                   1223456777777 6999999999999


Q ss_pred             Cc-hhhhhcCCccccccCCceEEEEEEEeecCCceEEEEecCCCcEEEEecCCCceEEEEEc
Q 010200          247 KS-RVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNFSNIVWTM  307 (515)
Q Consensus       247 ~S-~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~  307 (515)
                      +| .+++.++...+...+....+... +........+  +.....+++.|..++...+....
T Consensus       229 ~s~~l~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~y~~p~~~g~~~ig~~~  287 (405)
T 2gag_B          229 HSSVLAEMAGFELPIQSHPLQALVSE-LFEPVHPTVV--MSNHIHVYVSQAHKGELVMGAGI  287 (405)
T ss_dssp             GHHHHHHHHTCCCCEEEEEEEEEEEE-EBCSCCCSEE--EETTTTEEEEECTTSEEEEEEEE
T ss_pred             hHHHHHHHcCCCCCccccceeEEEec-CCccccCceE--EeCCCcEEEEEcCCCcEEEEecc
Confidence            98 67777765543322222222111 1111111121  23456788888877766665443

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.59  E-value=8.5e-14  Score=141.29  Aligned_cols=69  Identities=16%  Similarity=0.087  Sum_probs=56.4

Q ss_pred             EEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecC
Q 010200          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADG  245 (515)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG  245 (515)
                      ..++...+...|.+.+.+.| ++|+++++|++++.                    +++.++|.+.+| ++.||.||+|+|
T Consensus       148 g~~~~~~~~~~l~~~a~~~G-v~i~~~~~V~~i~~--------------------~~~~v~v~t~~g-~i~a~~VV~A~G  205 (397)
T 2oln_A          148 GTIDVRGTLAALFTLAQAAG-ATLRAGETVTELVP--------------------DADGVSVTTDRG-TYRAGKVVLACG  205 (397)
T ss_dssp             EEEEHHHHHHHHHHHHHHTT-CEEEESCCEEEEEE--------------------ETTEEEEEESSC-EEEEEEEEECCG
T ss_pred             CEEcHHHHHHHHHHHHHHcC-CEEECCCEEEEEEE--------------------cCCeEEEEECCC-EEEcCEEEEcCC
Confidence            35677889999999999888 99999999999976                    334577777665 699999999999


Q ss_pred             CC-chhhhhcCC
Q 010200          246 GK-SRVRELAGF  256 (515)
Q Consensus       246 ~~-S~vr~~l~~  256 (515)
                      .+ +.+++.++.
T Consensus       206 ~~s~~l~~~~g~  217 (397)
T 2oln_A          206 PYTNDLLEPLGA  217 (397)
T ss_dssp             GGHHHHHGGGTC
T ss_pred             cChHHHhhhcCC
Confidence            99 457777764

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.58  E-value=9.6e-14  Score=140.07  Aligned_cols=69  Identities=13%  Similarity=0.176  Sum_probs=56.8

Q ss_pred             EechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeE-EEcCCCcEEEeeEEEEecC
Q 010200          167 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAK-LDLSDGTSLYAKLVVGADG  245 (515)
Q Consensus       167 ~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~g~~~~ad~vV~AdG  245 (515)
                      .++...+...|.+.+++.| ++|+++++|++++.                    +++.+. |.+.+| ++.||.||.|+|
T Consensus       145 ~~~~~~l~~~l~~~~~~~G-v~i~~~~~v~~i~~--------------------~~~~v~gv~~~~g-~i~a~~VV~A~G  202 (382)
T 1y56_B          145 KADPFEATTAFAVKAKEYG-AKLLEYTEVKGFLI--------------------ENNEIKGVKTNKG-IIKTGIVVNATN  202 (382)
T ss_dssp             EECHHHHHHHHHHHHHHTT-CEEECSCCEEEEEE--------------------SSSBEEEEEETTE-EEECSEEEECCG
T ss_pred             eECHHHHHHHHHHHHHHCC-CEEECCceEEEEEE--------------------ECCEEEEEEECCc-EEECCEEEECcc
Confidence            4678899999999999988 99999999999986                    334455 777777 799999999999


Q ss_pred             CCc-hhhhhcCCc
Q 010200          246 GKS-RVRELAGFK  257 (515)
Q Consensus       246 ~~S-~vr~~l~~~  257 (515)
                      .+| .+.+.++..
T Consensus       203 ~~s~~l~~~~g~~  215 (382)
T 1y56_B          203 AWANLINAMAGIK  215 (382)
T ss_dssp             GGHHHHHHHHTCC
T ss_pred             hhHHHHHHHcCCC
Confidence            998 466666543

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.56  E-value=2.2e-13  Score=137.64  Aligned_cols=115  Identities=10%  Similarity=0.084  Sum_probs=73.0

Q ss_pred             EEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecC
Q 010200          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADG  245 (515)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG  245 (515)
                      ..++...+...|.+.+++.| ++++++++|++++.                    .++.+.+.+.+| ++.||.||.|+|
T Consensus       145 ~~~~~~~~~~~l~~~~~~~G-v~i~~~~~v~~i~~--------------------~~~~~~v~~~~g-~~~a~~vV~A~G  202 (389)
T 2gf3_A          145 GVLFSENCIRAYRELAEARG-AKVLTHTRVEDFDI--------------------SPDSVKIETANG-SYTADKLIVSMG  202 (389)
T ss_dssp             EEEEHHHHHHHHHHHHHHTT-CEEECSCCEEEEEE--------------------CSSCEEEEETTE-EEEEEEEEECCG
T ss_pred             cEEeHHHHHHHHHHHHHHCC-CEEEcCcEEEEEEe--------------------cCCeEEEEeCCC-EEEeCEEEEecC
Confidence            35677899999999999998 99999999999986                    334477777666 699999999999


Q ss_pred             CCch-hhhhcCCccccccCCceEEEEEEEeec------CCceEEEEecCCCcEEEEecCCC-ceEEE
Q 010200          246 GKSR-VRELAGFKTTGWSYSQNAIICTVEHNK------ENYCAWQRFLPAGPIALLPIGDN-FSNIV  304 (515)
Q Consensus       246 ~~S~-vr~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~p~~~~-~~~~~  304 (515)
                      .+|. +.+.++...+.  .........++...      .....+....+.+.++++|..++ ...+.
T Consensus       203 ~~~~~l~~~~g~~~pl--~~~rg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~y~~p~~~g~~~~iG  267 (389)
T 2gf3_A          203 AWNSKLLSKLNLDIPL--QPYRQVVGFFESDESKYSNDIDFPGFMVEVPNGIYYGFPSFGGCGLKLG  267 (389)
T ss_dssp             GGHHHHGGGGTEECCC--EEEEEEEEEECCCHHHHBGGGTCCEEEEEETTEEEEEECBSTTCCEEEE
T ss_pred             ccHHHHhhhhccCCce--EEEEEEEEEEecCcccccccccCCEEEEeCCCCcEEEcCCCCCCcEEEE
Confidence            9975 44444422211  11222222222221      01112222223446788888776 55554

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.54  E-value=1.5e-13  Score=149.03  Aligned_cols=63  Identities=17%  Similarity=0.155  Sum_probs=55.8

Q ss_pred             EEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecC
Q 010200          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADG  245 (515)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG  245 (515)
                      ..++...+...|.+.+++.| ++|+++++|++++.                    +++.+.|.+.+|.++.||.||.|+|
T Consensus       412 g~v~p~~l~~aL~~~a~~~G-v~i~~~t~V~~l~~--------------------~~~~v~V~t~~G~~i~Ad~VVlAtG  470 (676)
T 3ps9_A          412 GWLCPAELTRNVLELAQQQG-LQIYYQYQLQNFSR--------------------KDDCWLLNFAGDQQATHSVVVLANG  470 (676)
T ss_dssp             EEECHHHHHHHHHHHHHHTT-CEEEESCCEEEEEE--------------------ETTEEEEEETTSCEEEESEEEECCG
T ss_pred             eeeCHHHHHHHHHHHHHhCC-CEEEeCCeeeEEEE--------------------eCCeEEEEECCCCEEECCEEEECCC
Confidence            45778899999999999998 99999999999987                    3455888888888899999999999


Q ss_pred             CCch
Q 010200          246 GKSR  249 (515)
Q Consensus       246 ~~S~  249 (515)
                      .+|.
T Consensus       471 ~~s~  474 (676)
T 3ps9_A          471 HQIS  474 (676)
T ss_dssp             GGGG
T ss_pred             cchh
Confidence            9986

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.54  E-value=4.7e-14  Score=142.10  Aligned_cols=70  Identities=17%  Similarity=0.268  Sum_probs=58.8

Q ss_pred             EEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecC
Q 010200          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADG  245 (515)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG  245 (515)
                      ..++...+...|.+.+++.| ++|+++++|++++.                    +++.+.|++.+| ++.||.||.|+|
T Consensus       149 ~~~~~~~~~~~l~~~a~~~G-v~i~~~~~V~~i~~--------------------~~~~~~V~t~~g-~i~a~~VV~A~G  206 (381)
T 3nyc_A          149 ADIDTDALHQGYLRGIRRNQ-GQVLCNHEALEIRR--------------------VDGAWEVRCDAG-SYRAAVLVNAAG  206 (381)
T ss_dssp             EEECHHHHHHHHHHHHHHTT-CEEESSCCCCEEEE--------------------ETTEEEEECSSE-EEEESEEEECCG
T ss_pred             ceECHHHHHHHHHHHHHHCC-CEEEcCCEEEEEEE--------------------eCCeEEEEeCCC-EEEcCEEEECCC
Confidence            45788999999999999998 99999999999986                    334588888887 799999999999


Q ss_pred             CCch-hhhhcCCc
Q 010200          246 GKSR-VRELAGFK  257 (515)
Q Consensus       246 ~~S~-vr~~l~~~  257 (515)
                      .+|. +.+.++..
T Consensus       207 ~~s~~l~~~~g~~  219 (381)
T 3nyc_A          207 AWCDAIAGLAGVR  219 (381)
T ss_dssp             GGHHHHHHHHTCC
T ss_pred             hhHHHHHHHhCCC
Confidence            9984 56666643

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.53  E-value=4.4e-13  Score=127.99  Aligned_cols=37  Identities=24%  Similarity=0.479  Sum_probs=34.6

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      ++||+|||||||||++|+.|+++    |++|+||||.+.++
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~----G~~V~v~Ek~~~~G   38 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAA----GHQVHLFDKSRGSG   38 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC----CCCEEEEECCCCCC
Confidence            58999999999999999999996    99999999998774

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=99.53  E-value=5.2e-13  Score=139.66  Aligned_cols=116  Identities=16%  Similarity=0.073  Sum_probs=73.7

Q ss_pred             EEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEc---CCCc--EEEeeEE
Q 010200          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---SDGT--SLYAKLV  240 (515)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~g~--~~~ad~v  240 (515)
                      ..++...+...|.+.+.+.| ++|+.+++|++++.                    ++..+.|.+   .+|+  ++.||.|
T Consensus       144 g~v~~~~l~~~l~~~a~~~G-v~i~~~~~V~~l~~--------------------~~~~~~V~~~d~~~G~~~~i~A~~V  202 (501)
T 2qcu_A          144 CWVDDARLVLANAQMVVRKG-GEVLTRTRATSARR--------------------ENGLWIVEAEDIDTGKKYSWQARGL  202 (501)
T ss_dssp             EEECHHHHHHHHHHHHHHTT-CEEECSEEEEEEEE--------------------ETTEEEEEEEETTTCCEEEEEESCE
T ss_pred             CEEcHHHHHHHHHHHHHHcC-CEEEcCcEEEEEEE--------------------eCCEEEEEEEECCCCCEEEEECCEE
Confidence            34788999999999999998 99999999999976                    224455655   3565  7999999


Q ss_pred             EEecCCCch-hhhh-cCCccccccCCceEEEEEEEeecCCceEEEEec-CCCcEEEEecCCCceE
Q 010200          241 VGADGGKSR-VREL-AGFKTTGWSYSQNAIICTVEHNKENYCAWQRFL-PAGPIALLPIGDNFSN  302 (515)
Q Consensus       241 V~AdG~~S~-vr~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~p~~~~~~~  302 (515)
                      |.|+|.+|. +++. ++......-.........++...+....+.... ++..++++|..++...
T Consensus       203 V~AtG~~s~~l~~~~l~~~~~~~i~p~rG~~~~~~~~~~~~~~~~~~~~dg~~~~~~P~~~g~~~  267 (501)
T 2qcu_A          203 VNATGPWVKQFFDDGMHLPSPYGIRLIKGSHIVVPRVHTQKQAYILQNEDKRIVFVIPWMDEFSI  267 (501)
T ss_dssp             EECCGGGHHHHHHHHTCCCCSSCBCCEEEEEEEEECSSSCSCEEEEECTTSCEEEEEEETTTEEE
T ss_pred             EECCChhHHHHHHHhccCCcccccccceeEEEEECCCCCCceEEEeecCCCCEEEEEEcCCCcEE
Confidence            999999986 4553 543211112233333333332222222221113 3346788998766533

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.53  E-value=4.4e-13  Score=145.61  Aligned_cols=63  Identities=14%  Similarity=0.082  Sum_probs=54.1

Q ss_pred             EEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCc-EEEeeEEEEec
Q 010200          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT-SLYAKLVVGAD  244 (515)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~ad~vV~Ad  244 (515)
                      ..++...+...|.+.+++.| ++|+++++|++++.                    +++.+.|.+.+|. ++.||.||.|+
T Consensus       407 g~v~p~~l~~aL~~~a~~~G-v~i~~~t~V~~l~~--------------------~~~~v~V~t~~G~~~i~Ad~VVlAt  465 (689)
T 3pvc_A          407 GWLCPSDLTHALMMLAQQNG-MTCHYQHELQRLKR--------------------IDSQWQLTFGQSQAAKHHATVILAT  465 (689)
T ss_dssp             EEECHHHHHHHHHHHHHHTT-CEEEESCCEEEEEE--------------------CSSSEEEEEC-CCCCEEESEEEECC
T ss_pred             eEECHHHHHHHHHHHHHhCC-CEEEeCCeEeEEEE--------------------eCCeEEEEeCCCcEEEECCEEEECC
Confidence            45678899999999999998 99999999999987                    3345888888887 89999999999


Q ss_pred             CCCch
Q 010200          245 GGKSR  249 (515)
Q Consensus       245 G~~S~  249 (515)
                      |.+|.
T Consensus       466 G~~s~  470 (689)
T 3pvc_A          466 GHRLP  470 (689)
T ss_dssp             GGGTT
T ss_pred             Ccchh
Confidence            99986

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.46  E-value=1e-11  Score=124.62  Aligned_cols=62  Identities=10%  Similarity=0.176  Sum_probs=52.4

Q ss_pred             EEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecC
Q 010200          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADG  245 (515)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG  245 (515)
                      ..++...+...|.+.+.+.| ++++++++|++++.                    +++.+.+++.+|+ +.||.||.|+|
T Consensus       144 g~~~~~~l~~~l~~~~~~~G-~~i~~~~~V~~i~~--------------------~~~~~~v~~~~g~-~~a~~vV~a~G  201 (372)
T 2uzz_A          144 GFLRSELAIKTWIQLAKEAG-CAQLFNCPVTAIRH--------------------DDDGVTIETADGE-YQAKKAIVCAG  201 (372)
T ss_dssp             EEEEHHHHHHHHHHHHHHTT-CEEECSCCEEEEEE--------------------CSSSEEEEESSCE-EEEEEEEECCG
T ss_pred             cEEcHHHHHHHHHHHHHHCC-CEEEcCCEEEEEEE--------------------cCCEEEEEECCCe-EEcCEEEEcCC
Confidence            45678899999999999988 99999999999976                    2344778877774 99999999999


Q ss_pred             CCch
Q 010200          246 GKSR  249 (515)
Q Consensus       246 ~~S~  249 (515)
                      .+|.
T Consensus       202 ~~s~  205 (372)
T 2uzz_A          202 TWVK  205 (372)
T ss_dssp             GGGG
T ss_pred             ccHH
Confidence            9874

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.46  E-value=1.2e-13  Score=140.55  Aligned_cols=156  Identities=20%  Similarity=0.185  Sum_probs=93.7

Q ss_pred             CCCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCC-------CCCCCCCCCC-cEEEeCH-hHHHHH
Q 010200           51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSN-------FIKKEDPPDP-RVSTVTP-ATISFF  121 (515)
Q Consensus        51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~-------~~~~~~~~~~-~~~~l~~-~~~~~l  121 (515)
                      +++.++||+|||||++|+++|+.|++.    |++|+|||+.+.++.+.       |......... .-..-.+ .....+
T Consensus        23 M~~~~~dViIIGgG~AGl~aA~~La~~----G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l   98 (417)
T 3v76_A           23 MVAEKQDVVIIGAGAAGMMCAIEAGKR----GRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSAL   98 (417)
T ss_dssp             -----CCEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHH
T ss_pred             ccCCCCCEEEECcCHHHHHHHHHHHHC----CCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHH
Confidence            345679999999999999999999996    99999999998764321       1000000000 0000011 112233


Q ss_pred             HHcCCchhhhhhhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeC
Q 010200          122 KEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALL  201 (515)
Q Consensus       122 ~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~  201 (515)
                      ..+...+.+.-...   .++.+.....             ........+..+.+.|.+.+++.| ++|+++++|++++. 
T Consensus        99 ~~~~~~~~~~~~~~---~Gi~~~~~~~-------------g~~~~~~~~~~l~~~L~~~l~~~G-v~i~~~~~V~~i~~-  160 (417)
T 3v76_A           99 ARYRPQDFVALVER---HGIGWHEKTL-------------GQLFCDHSAKDIIRMLMAEMKEAG-VQLRLETSIGEVER-  160 (417)
T ss_dssp             HHSCHHHHHHHHHH---TTCCEEECST-------------TEEEESSCHHHHHHHHHHHHHHHT-CEEECSCCEEEEEE-
T ss_pred             HhcCHHHHHHHHHH---cCCCcEEeeC-------------CEEeeCCCHHHHHHHHHHHHHHCC-CEEEECCEEEEEEE-
Confidence            33332211111000   0001111100             000012456789999999999888 99999999999976 


Q ss_pred             CCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCc
Q 010200          202 PSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKS  248 (515)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S  248 (515)
                                         +++.+.|.+.+| ++.||.||+|+|.+|
T Consensus       161 -------------------~~~~~~V~~~~g-~i~ad~VIlAtG~~S  187 (417)
T 3v76_A          161 -------------------TASGFRVTTSAG-TVDAASLVVASGGKS  187 (417)
T ss_dssp             -------------------ETTEEEEEETTE-EEEESEEEECCCCSS
T ss_pred             -------------------eCCEEEEEECCc-EEEeeEEEECCCCcc
Confidence                               345688888888 799999999999999

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.43  E-value=1.2e-12  Score=138.39  Aligned_cols=113  Identities=16%  Similarity=0.101  Sum_probs=72.4

Q ss_pred             EEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCe-eEEEcCC---C--cEEEeeE
Q 010200          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL-AKLDLSD---G--TSLYAKL  239 (515)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~---g--~~~~ad~  239 (515)
                      ..++...+...|.+.+.+.| ++|+.+++|+++..                    .++. +.|.+.+   |  .++.||.
T Consensus       165 g~vd~~~l~~~L~~~a~~~G-~~i~~~~~V~~l~~--------------------~~g~v~gV~~~d~~tg~~~~i~A~~  223 (561)
T 3da1_A          165 YRTDDARLTLEIMKEAVARG-AVALNYMKVESFIY--------------------DQGKVVGVVAKDRLTDTTHTIYAKK  223 (561)
T ss_dssp             EECCHHHHHHHHHHHHHHTT-CEEEESEEEEEEEE--------------------ETTEEEEEEEEETTTCCEEEEEEEE
T ss_pred             ceEcHHHHHHHHHHHHHHcC-CEEEcCCEEEEEEE--------------------cCCeEEEEEEEEcCCCceEEEECCE
Confidence            35778899999999999998 99999999999986                    2232 3354432   3  3799999


Q ss_pred             EEEecCCCc-hhhhhcCCccccccCCceEEEEEEEeecCC-ceEEEEec-CCC-cEEEEecCCCc
Q 010200          240 VVGADGGKS-RVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFL-PAG-PIALLPIGDNF  300 (515)
Q Consensus       240 vV~AdG~~S-~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~g-~~~~~p~~~~~  300 (515)
                      ||.|+|.|| .+++.++......-....+....++..... ........ +++ .++++|. ++.
T Consensus       224 VV~AaG~~s~~l~~~~g~~~~~~v~p~kG~~lvl~~~~~~~~~~~~~~~~~dgr~v~~iP~-~g~  287 (561)
T 3da1_A          224 VVNAAGPWVDTLREKDRSKHGKYLKLSKGVHLVVDQSRFPLRQAVYFDTESDGRMIFAIPR-EGK  287 (561)
T ss_dssp             EEECCGGGHHHHHHTTTCCCSSEEEEEEEEEEEEEGGGSCCSSEEEECCSSSCCCEEEEEE-TTE
T ss_pred             EEECCCcchHHHHHhcCCCCCceEEeccEEEEEECCccCCCceEEEeccCCCCcEEEEEec-CCC
Confidence            999999999 667776654222223333444444433222 22221111 344 5678898 444

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.43  E-value=5.5e-12  Score=130.71  Aligned_cols=72  Identities=18%  Similarity=0.340  Sum_probs=50.6

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCC------cEEEEEcCCCCCCCCCCCCCC-CC--CCC--cEEEeCHhHHHHHHH
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKH------LSVAIIDSNPALGKSNFIKKE-DP--PDP--RVSTVTPATISFFKE  123 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G------~~V~v~E~~~~~~~~~~~~~~-~~--~~~--~~~~l~~~~~~~l~~  123 (515)
                      .+||+|||||++||++|+.|++.    |      ++|+|||+.+.++.+...... +.  ..+  ......+...+++++
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~----G~~~~~~~~V~vlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~~   80 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKE----IKEKNLPLELTLVEASPRVGGKIQTVKKDGYIIERGPDSFLERKKSAPQLVKD   80 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHH----HTTTTCSEEEEEECSSSSSCTTCCEECCTTCCEESSCCCEETTCTHHHHHHHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHh----ccccCCCCCEEEEECCCCCCceEEEeccCCEEeccChhhhhhCCHHHHHHHHH
Confidence            58999999999999999999996    7      999999999877543221000 00  000  112235677889999


Q ss_pred             cCCchhh
Q 010200          124 IGAWQYV  130 (515)
Q Consensus       124 lgl~~~~  130 (515)
                      +|+...+
T Consensus        81 lgl~~~~   87 (470)
T 3i6d_A           81 LGLEHLL   87 (470)
T ss_dssp             TTCCTTE
T ss_pred             cCCccee
Confidence            9986554

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.41  E-value=1.7e-13  Score=141.18  Aligned_cols=170  Identities=23%  Similarity=0.278  Sum_probs=98.9

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      .++||+|||||++|+++|+.|++.    |.+|+||||.+.++.+......+....  .... ...+++..++....+...
T Consensus        25 ~~~dVvIIGgG~aGl~aA~~la~~----G~~V~llEk~~~~g~~~~~sg~g~~~~--~~~~-~~~~~~~~~~~~~~~~~~   97 (447)
T 2i0z_A           25 MHYDVIVIGGGPSGLMAAIGAAEE----GANVLLLDKGNKLGRKLAISGGGRCNV--TNRL-PLDEIVKHIPGNGRFLYS   97 (447)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSSCHHHHHTGGGTCCC--EECS-CHHHHHHTCTBTGGGGHH
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHC----CCCEEEEECCCCCCceeEEeCCCceec--cCcc-cHHHHHHHhccChHHHHH
Confidence            458999999999999999999996    899999999887642211000000000  0000 001222222211111000


Q ss_pred             hccccc---eEEEEeCCCccceeeecccCCCCcceEEe----chHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCC
Q 010200          134 RHAYFD---KMQVWDYTGLGYTKYNARDVNKEILGCVV----ENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSS  206 (515)
Q Consensus       134 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i----~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~  206 (515)
                      ....+.   .+.++...+.   .+..     ...+..+    ....+.+.|.+.+++.| ++|+++++|+++..      
T Consensus        98 ~~~~~~~~~~~~~~~~~G~---~~~~-----~~~g~~~p~~~~~~~l~~~L~~~~~~~G-V~i~~~~~V~~i~~------  162 (447)
T 2i0z_A           98 AFSIFNNEDIITFFENLGV---KLKE-----EDHGRMFPVSNKAQSVVDALLTRLKDLG-VKIRTNTPVETIEY------  162 (447)
T ss_dssp             HHHHSCHHHHHHHHHHTTC---CEEE-----CGGGEEEETTCCHHHHHHHHHHHHHHTT-CEEECSCCEEEEEE------
T ss_pred             HHHhcCHHHHHHHHHhcCC---ceEE-----eeCCEEECCCCCHHHHHHHHHHHHHHCC-CEEEeCcEEEEEEe------
Confidence            000000   0000000000   0000     0011111    35788899999999887 99999999999976      


Q ss_pred             cccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCc-----------hhhhhcCCcc
Q 010200          207 ISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKS-----------RVRELAGFKT  258 (515)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S-----------~vr~~l~~~~  258 (515)
                                   +++..+.|.+.+|+++.||.||+|+|.+|           .+++.+|...
T Consensus       163 -------------~~~~v~~V~~~~G~~i~Ad~VVlAtGg~s~~~~g~tG~g~~la~~~G~~~  212 (447)
T 2i0z_A          163 -------------ENGQTKAVILQTGEVLETNHVVIAVGGKSVPQTGSTGDGYAWAEKAGHTI  212 (447)
T ss_dssp             -------------ETTEEEEEEETTCCEEECSCEEECCCCSSSGGGSCSSHHHHHHHHTTCCE
T ss_pred             -------------cCCcEEEEEECCCCEEECCEEEECCCCCcCCCCCCCcHHHHHHHHCCCCc
Confidence                         12233678888887899999999999999           7888877553

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.41  E-value=3.3e-13  Score=141.16  Aligned_cols=147  Identities=16%  Similarity=0.177  Sum_probs=92.7

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCC---------------CCC----CC--CCCCCcE
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSN---------------FIK----KE--DPPDPRV  110 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~---------------~~~----~~--~~~~~~~  110 (515)
                      ...++||+||||||+||++|+.|++.    |++|+|||+.+.++.+.               +..    .+  ....+.-
T Consensus       104 ~~~~~DVVIVGgGpaGL~aA~~La~~----G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl  179 (549)
T 3nlc_A          104 ENLTERPIVIGFGPCGLFAGLVLAQM----GFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKL  179 (549)
T ss_dssp             TTCCCCCEEECCSHHHHHHHHHHHHT----TCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCC
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHHC----CCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCce
Confidence            34458999999999999999999996    99999999987541100               000    00  0000000


Q ss_pred             ---E----EeCHhHHHHHHHcCCchhhhhhhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhc
Q 010200          111 ---S----TVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQN  183 (515)
Q Consensus       111 ---~----~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~  183 (515)
                         .    .......+.+...|....+...                           ..+.........+...|.+.+++
T Consensus       180 ~~~i~~~~~~~~~v~~~~~~~G~~~~i~~~---------------------------~~p~~G~~~~~~l~~~L~~~l~~  232 (549)
T 3nlc_A          180 YSQVKDPNFYGRKVITEFVEAGAPEEILYV---------------------------SKPHIGTFKLVTMIEKMRATIIE  232 (549)
T ss_dssp             CCCSCCTTCHHHHHHHHHHHTTCCGGGGTB---------------------------SSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEeccccccHHHHHHHHHHcCCCceEeec---------------------------cccccccchHHHHHHHHHHHHHh
Confidence               0    0001222223333322111100                           00111123457788999999998


Q ss_pred             CCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200          184 TEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR  249 (515)
Q Consensus       184 ~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~  249 (515)
                      .| ++|+++++|++++.                   +++..+.|.+.+|+++.||+||+|+|.+|.
T Consensus       233 ~G-v~I~~~t~V~~I~~-------------------~~~~v~gV~l~~G~~i~Ad~VVlA~G~~s~  278 (549)
T 3nlc_A          233 LG-GEIRFSTRVDDLHM-------------------EDGQITGVTLSNGEEIKSRHVVLAVGHSAR  278 (549)
T ss_dssp             TT-CEEESSCCEEEEEE-------------------SSSBEEEEEETTSCEEECSCEEECCCTTCH
T ss_pred             cC-CEEEeCCEEEEEEE-------------------eCCEEEEEEECCCCEEECCEEEECCCCChh
Confidence            87 99999999999986                   122345588889989999999999999995

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.41  E-value=5.2e-12  Score=126.37  Aligned_cols=72  Identities=13%  Similarity=0.206  Sum_probs=58.6

Q ss_pred             EEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCC--cEEEeeEEEEe
Q 010200          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG--TSLYAKLVVGA  243 (515)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g--~~~~ad~vV~A  243 (515)
                      ..++...+...|.+.+++.| ++|+++++|++++.                   +.+..+.|.+.+|  .++.||.||.|
T Consensus       145 ~~~~~~~~~~~l~~~~~~~G-v~i~~~~~v~~i~~-------------------~~~~~~~v~~~~g~~~~~~a~~VV~A  204 (369)
T 3dme_A          145 GIVDSHALMLAYQGDAESDG-AQLVFHTPLIAGRV-------------------RPEGGFELDFGGAEPMTLSCRVLINA  204 (369)
T ss_dssp             EEECHHHHHHHHHHHHHHTT-CEEECSCCEEEEEE-------------------CTTSSEEEEECTTSCEEEEEEEEEEC
T ss_pred             EEECHHHHHHHHHHHHHHCC-CEEECCCEEEEEEE-------------------cCCceEEEEECCCceeEEEeCEEEEC
Confidence            45778899999999999998 99999999999986                   1123377888887  37999999999


Q ss_pred             cCCCc-hhhhhc-CCc
Q 010200          244 DGGKS-RVRELA-GFK  257 (515)
Q Consensus       244 dG~~S-~vr~~l-~~~  257 (515)
                      +|.+| .+.+.+ |.+
T Consensus       205 ~G~~s~~l~~~~~g~~  220 (369)
T 3dme_A          205 AGLHAPGLARRIEGIP  220 (369)
T ss_dssp             CGGGHHHHHHTEETSC
T ss_pred             CCcchHHHHHHhcCCC
Confidence            99998 566666 654

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.40  E-value=1.5e-12  Score=133.80  Aligned_cols=63  Identities=13%  Similarity=0.058  Sum_probs=54.6

Q ss_pred             EEechHHHHHHHHHHHhcCCCceEEcCC---eeEEEEeCCCCCCcccCCCCCcccccccCCeeE-EEcCCCcEEEeeEEE
Q 010200          166 CVVENKVLHSSLLSCMQNTEFQKTIYPS---RLTSMALLPSSSSISVDSTPSATTLFTKGHLAK-LDLSDGTSLYAKLVV  241 (515)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~i~~~~---~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~g~~~~ad~vV  241 (515)
                      ..++...+...|.+.+++.| ++|++++   +|++++.                    .++.++ |.+.+|+++.||.||
T Consensus       156 g~~~~~~~~~~L~~~a~~~G-v~i~~~t~~~~V~~i~~--------------------~~~~v~gV~t~~G~~i~Ad~VV  214 (438)
T 3dje_A          156 GWAHARNALVAAAREAQRMG-VKFVTGTPQGRVVTLIF--------------------ENNDVKGAVTADGKIWRAERTF  214 (438)
T ss_dssp             EEECHHHHHHHHHHHHHHTT-CEEEESTTTTCEEEEEE--------------------ETTEEEEEEETTTEEEECSEEE
T ss_pred             EEecHHHHHHHHHHHHHhcC-CEEEeCCcCceEEEEEe--------------------cCCeEEEEEECCCCEEECCEEE
Confidence            45667899999999999998 9999999   9999986                    334566 888899889999999


Q ss_pred             EecCCCch
Q 010200          242 GADGGKSR  249 (515)
Q Consensus       242 ~AdG~~S~  249 (515)
                      .|+|.+|.
T Consensus       215 ~AtG~~s~  222 (438)
T 3dje_A          215 LCAGASAG  222 (438)
T ss_dssp             ECCGGGGG
T ss_pred             ECCCCChh
Confidence            99999986

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.39  E-value=9e-13  Score=133.58  Aligned_cols=154  Identities=16%  Similarity=0.166  Sum_probs=90.8

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCC-------CCCCCCCCCCC-cEEEeCHh-HHHHHHHc
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS-------NFIKKEDPPDP-RVSTVTPA-TISFFKEI  124 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~-------~~~~~~~~~~~-~~~~l~~~-~~~~l~~l  124 (515)
                      .++||+|||||++|+++|+.|++.    |.+|+||||.+.++.+       .|......... .-+.-.+. ....+..+
T Consensus         3 ~~~dViIIGgG~aGl~aA~~la~~----G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~   78 (401)
T 2gqf_A            3 QYSENIIIGAGAAGLFCAAQLAKL----GKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARY   78 (401)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhC----CCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhC
Confidence            468999999999999999999996    9999999999876421       11100000000 00000000 01112222


Q ss_pred             CCch---hhhhhhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeC
Q 010200          125 GAWQ---YVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALL  201 (515)
Q Consensus       125 gl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~  201 (515)
                      ...+   .+...+.      .+.....  ...++          .. ....+.+.|.+.+++.| ++|+++++|+++.. 
T Consensus        79 ~~~~~~~~~~~~Gi------~~~~~~~--g~~~p----------~~-~~~~l~~~L~~~~~~~G-v~i~~~~~v~~i~~-  137 (401)
T 2gqf_A           79 TNWDFISLVAEQGI------TYHEKEL--GQLFC----------DE-GAEQIVEMLKSECDKYG-AKILLRSEVSQVER-  137 (401)
T ss_dssp             CHHHHHHHHHHTTC------CEEECST--TEEEE----------TT-CTHHHHHHHHHHHHHHT-CEEECSCCEEEEEE-
T ss_pred             CHHHHHHHHHhCCC------ceEECcC--CEEcc----------CC-CHHHHHHHHHHHHHHCC-CEEEeCCEEEEEEc-
Confidence            1111   1111111      0100000  00011          01 56788899999998888 99999999999976 


Q ss_pred             CCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCc
Q 010200          202 PSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKS  248 (515)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S  248 (515)
                              +++  +     ....+.|++.+| ++.||.||+|+|.+|
T Consensus       138 --------~~~--g-----~~~~~~v~~~~g-~i~ad~VVlAtG~~s  168 (401)
T 2gqf_A          138 --------IQN--D-----EKVRFVLQVNST-QWQCKNLIVATGGLS  168 (401)
T ss_dssp             --------CCS--C-----SSCCEEEEETTE-EEEESEEEECCCCSS
T ss_pred             --------ccC--c-----CCCeEEEEECCC-EEECCEEEECCCCcc
Confidence                    100  0     024477877776 799999999999999

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.37  E-value=8.2e-12  Score=120.54  Aligned_cols=145  Identities=21%  Similarity=0.273  Sum_probs=95.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      ..+||+|||||++|+++|+.|++.   +|++|+|+||.+.++...+....   ......+.....++++++|+.      
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~---~G~~V~viEk~~~~gg~~~~~~~---~~~~~~~~~~~~~~l~~~G~~------  105 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKN---PNVQVAIIEQSVSPGGGAWLGGQ---LFSAMIVRKPAHLFLDEIGVA------  105 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTS---TTSCEEEEESSSSCCTTTTCCST---TCCCEEEETTTHHHHHHHTCC------
T ss_pred             cccCEEEECccHHHHHHHHHHHHc---CCCeEEEEECCCCCCCceecCCc---chHHHHcCcHHHHHHHHcCCC------
Confidence            458999999999999999999994   28999999999877432221110   111233334455566655541      


Q ss_pred             hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (515)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~  213 (515)
                          +..     . +              .+....+...+...|.+.+.+..+++++++++|+++..             
T Consensus       106 ----~~~-----~-~--------------~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~-------------  148 (284)
T 1rp0_A          106 ----YDE-----Q-D--------------TYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIV-------------  148 (284)
T ss_dssp             ----CEE-----C-S--------------SEEEESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEE-------------
T ss_pred             ----ccc-----C-C--------------CEEEecCHHHHHHHHHHHHHhcCCCEEEcCcEEEEEEe-------------
Confidence                110     0 0              00012256788888998887643399999999999976             


Q ss_pred             CcccccccCC---eeEEEc-----C--CC-----cEEEeeEEEEecCCCchhhhhc
Q 010200          214 SATTLFTKGH---LAKLDL-----S--DG-----TSLYAKLVVGADGGKSRVRELA  254 (515)
Q Consensus       214 ~~~~~~~~~~---~~~v~~-----~--~g-----~~~~ad~vV~AdG~~S~vr~~l  254 (515)
                             +..   .+.+..     .  +|     .++.+|.||+|+|.+|.++...
T Consensus       149 -------~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~  197 (284)
T 1rp0_A          149 -------KGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATG  197 (284)
T ss_dssp             -------ETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHH
T ss_pred             -------cCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHHHH
Confidence                   112   233321     1  22     4799999999999999987764

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.37  E-value=3e-11  Score=119.91  Aligned_cols=146  Identities=18%  Similarity=0.140  Sum_probs=81.5

Q ss_pred             ccEEEECCCHHHHHHHHHHhc---CCCCCCcEEEEEcCCCCCCCCCCCCCCCCC-------CCcEEEeCHh----HHHHH
Q 010200           56 YDVAVVGGGMVGMALACSLAS---MPLTKHLSVAIIDSNPALGKSNFIKKEDPP-------DPRVSTVTPA----TISFF  121 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~---~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~-------~~~~~~l~~~----~~~~l  121 (515)
                      +||+|||||++||++|+.|++   .    |++|+||||...++.+.........       ........+.    ..+.+
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~----G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~   77 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSG----PLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFY   77 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-C----CEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHH
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccC----CceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHH
Confidence            589999999999999999999   7    8999999998766432110000000       0001111111    11222


Q ss_pred             HHcCCchhhhhhhccccceEEEEeCCCccceeeecccCCCCcceEEe--chHHHHHHHHHHHhcCCCceEEcCCeeEEEE
Q 010200          122 KEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVV--ENKVLHSSLLSCMQNTEFQKTIYPSRLTSMA  199 (515)
Q Consensus       122 ~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~  199 (515)
                      +.+      ...+.     +..|..........      .....+..  .-..+.+.|.+.+   | ++|+++++|++++
T Consensus        78 ~~~------~~~g~-----~~~~~~~~~~~~~~------~~~~~~~~~~g~~~l~~~l~~~~---g-~~i~~~~~V~~i~  136 (342)
T 3qj4_A           78 DEL------LAYGV-----LRPLSSPIEGMVMK------EGDCNFVAPQGISSIIKHYLKES---G-AEVYFRHRVTQIN  136 (342)
T ss_dssp             HHH------HHTTS-----CEECCSCEETCCC--------CCEEEECTTCTTHHHHHHHHHH---T-CEEESSCCEEEEE
T ss_pred             HHH------HhCCC-----eecCchhhcceecc------CCccceecCCCHHHHHHHHHHhc---C-CEEEeCCEEEEEE
Confidence            211      11110     00111000000000      00001111  1234555555554   5 8999999999998


Q ss_pred             eCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCC
Q 010200          200 LLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGG  246 (515)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~  246 (515)
                      .                    .++.++|.+.+|+++.+|.||.|...
T Consensus       137 ~--------------------~~~~~~v~~~~g~~~~ad~vV~A~p~  163 (342)
T 3qj4_A          137 L--------------------RDDKWEVSKQTGSPEQFDLIVLTMPV  163 (342)
T ss_dssp             E--------------------CSSSEEEEESSSCCEEESEEEECSCH
T ss_pred             E--------------------cCCEEEEEECCCCEEEcCEEEECCCH
Confidence            7                    44568899988888999999999874

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=99.36  E-value=4e-12  Score=124.24  Aligned_cols=164  Identities=16%  Similarity=0.220  Sum_probs=98.6

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      ..+||+||||||+||++|+.|++..  +|++|+|+|+...++...+..   ........+.+...++|+++|+.      
T Consensus        78 ~~~DVvIVGgG~AGL~aA~~La~~~--~G~~V~LiEk~~~~GGg~~~~---g~~~~~~~~~~~~~~~L~~~Gv~------  146 (344)
T 3jsk_A           78 AETDIVIVGAGSCGLSAAYVLSTLR--PDLRITIVEAGVAPGGGAWLG---GQLFSAMVMRKPADVFLDEVGVP------  146 (344)
T ss_dssp             HBCSEEEECCSHHHHHHHHHHHHHC--TTSCEEEEESSSSCCTTTTCC---BTTCCCEEEETTTHHHHHHHTCC------
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcC--CCCEEEEEeCCCccCCccccC---CccchhhhcchHHHHHHHHcCCc------
Confidence            3589999999999999999999831  289999999998775333311   11122333446667777777762      


Q ss_pred             hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCC-CcccCCC
Q 010200          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSS-SISVDST  212 (515)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~-~~~~~~~  212 (515)
                          +..      .+  ..            ....+..++.+.|.+.+.+..+++++++++|+++..+.+.. .....++
T Consensus       147 ----~~~------~G--~~------------~~~~~~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~  202 (344)
T 3jsk_A          147 ----YED------EG--DY------------VVVKHAALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDD  202 (344)
T ss_dssp             ----CEE------CS--SE------------EEESCHHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------
T ss_pred             ----ccc------cC--Ce------------EEEecHHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccc
Confidence                110      00  00            01123567789999999886449999999999997622100 0000000


Q ss_pred             CCcccccc---cCCeeEEEc----C--------CCcEEEeeEEEEecCCCchhhhhc
Q 010200          213 PSATTLFT---KGHLAKLDL----S--------DGTSLYAKLVVGADGGKSRVRELA  254 (515)
Q Consensus       213 ~~~~~~~~---~~~~~~v~~----~--------~g~~~~ad~vV~AdG~~S~vr~~l  254 (515)
                      ...  +..   ...++.+.+    .        ++.+++|++||+|||..|++++.+
T Consensus       203 g~~--~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i~Ak~VV~ATG~~s~v~~~~  257 (344)
T 3jsk_A          203 GEA--EDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTINAPVIISTTGHDGPFGAFS  257 (344)
T ss_dssp             --------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEEECSEEEECCCSSSSSSCHH
T ss_pred             ccc--ccCCCceEeEEEeeeeeeeccCCcccccCceEEEcCEEEECCCCCchhhHHH
Confidence            000  000   111222221    1        224799999999999999976665

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=99.36  E-value=1.2e-12  Score=133.30  Aligned_cols=70  Identities=10%  Similarity=0.052  Sum_probs=53.4

Q ss_pred             EEechHHHHHHHHHHHhcCCCceEEcCCeeE---------EEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEE
Q 010200          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLT---------SMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLY  236 (515)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~---------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~  236 (515)
                      ..++...+...|.+.+.+.| ++++++++|+         +++.                    +++.+.|.+.+| ++.
T Consensus       167 g~v~~~~l~~~L~~~~~~~G-v~i~~~~~v~~~~g~~~~~~i~~--------------------~~~~v~v~~~~g-~i~  224 (405)
T 3c4n_A          167 LTYRPGSLALLAAQQAIGQG-AGLLLNTRAELVPGGVRLHRLTV--------------------TNTHQIVVHETR-QIR  224 (405)
T ss_dssp             EEECHHHHHHHHHHHHHTTT-CEEECSCEEEEETTEEEEECBCC---------------------------CBCCE-EEE
T ss_pred             EEEcHHHHHHHHHHHHHHCC-CEEEcCCEEEeccccccccceEe--------------------eCCeEEEEECCc-EEE
Confidence            45778899999999999988 9999999999         7754                    223356666666 799


Q ss_pred             eeEEEEecCCCc-hhhh-hcCCc
Q 010200          237 AKLVVGADGGKS-RVRE-LAGFK  257 (515)
Q Consensus       237 ad~vV~AdG~~S-~vr~-~l~~~  257 (515)
                      ||.||+|+|.+| .+++ .++..
T Consensus       225 a~~VV~A~G~~s~~l~~~~~g~~  247 (405)
T 3c4n_A          225 AGVIIVAAGAAGPALVEQGLGLH  247 (405)
T ss_dssp             EEEEEECCGGGHHHHHHHHHCCC
T ss_pred             CCEEEECCCccHHHHHHHhcCCC
Confidence            999999999999 6777 77654

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.34  E-value=9.3e-13  Score=139.80  Aligned_cols=160  Identities=18%  Similarity=0.140  Sum_probs=95.7

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhh-
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYV-  130 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~-  130 (515)
                      ...++||||||||++||++|+.|++.    |++|+||||.+.++.....      .+.++...  .....+.+++.+.+ 
T Consensus       118 ~~~~~DVvVVG~G~aGl~aA~~la~~----G~~V~vlEk~~~~gg~s~~------s~gg~~~~--~~~~~~~~g~~ds~~  185 (566)
T 1qo8_A          118 PSETTQVLVVGAGSAGFNASLAAKKA----GANVILVDKAPFSGGNSMI------SAGGMNAV--GTKQQTAHGVEDKVE  185 (566)
T ss_dssp             CSEEEEEEEECCSHHHHHHHHHHHHH----TCCEEEECSSSSSCTTGGG------CCSCEECS--SCHHHHHTTCCCCHH
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHC----CCcEEEEeCCCCCCCcccc------cCceeEcc--CCHHHHHhCCCCCHH
Confidence            34568999999999999999999996    9999999999877432211      11122111  11112222221111 


Q ss_pred             ---------------------------------hhhhccccceEEEEeCCCccceeeecccCCCCcceE-----EechHH
Q 010200          131 ---------------------------------QQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGC-----VVENKV  172 (515)
Q Consensus       131 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~r~~  172 (515)
                                                       .+.+. ++..+.   ..+.          ......+     .+....
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~Gv-~~~~~~---~~~g----------~~~~r~~~~~~~~~~~~~  251 (566)
T 1qo8_A          186 WFIEDAMKGGRQQNDIKLVTILAEQSADGVQWLESLGA-NLDDLK---RSGG----------ARVDRTHRPHGGKSSGPE  251 (566)
T ss_dssp             HHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTC-CCCEEE---CCTT----------CSSCCEEECSSSSCHHHH
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHhccHHHHHHHHhcCC-cccccc---ccCC----------CCCCceeecCCCCCCHHH
Confidence                                             11111 111100   0000          0000011     134678


Q ss_pred             HHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCc--EEEeeEEEEecCCCchh
Q 010200          173 LHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT--SLYAKLVVGADGGKSRV  250 (515)
Q Consensus       173 l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~--~~~ad~vV~AdG~~S~v  250 (515)
                      +...|.+.+++.| ++|+++++|+++..+           +++     ...++.+...+|+  ++.+|.||+|+|.+|..
T Consensus       252 l~~~L~~~~~~~g-v~i~~~~~v~~l~~~-----------~~g-----~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~~  314 (566)
T 1qo8_A          252 IIDTLRKAAKEQG-IDTRLNSRVVKLVVN-----------DDH-----SVVGAVVHGKHTGYYMIGAKSVVLATGGYGMN  314 (566)
T ss_dssp             HHHHHHHHHHHTT-CCEECSEEEEEEEEC-----------TTS-----BEEEEEEEETTTEEEEEEEEEEEECCCCCTTC
T ss_pred             HHHHHHHHHHhcC-CEEEeCCEEEEEEEC-----------CCC-----cEEEEEEEeCCCcEEEEEcCEEEEecCCcccC
Confidence            9999999999988 999999999999861           000     1113444444675  68999999999999987


Q ss_pred             hhhc
Q 010200          251 RELA  254 (515)
Q Consensus       251 r~~l  254 (515)
                      ++.+
T Consensus       315 ~~~~  318 (566)
T 1qo8_A          315 KEMI  318 (566)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6544

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=99.32  E-value=5e-11  Score=119.26  Aligned_cols=39  Identities=31%  Similarity=0.389  Sum_probs=34.6

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      |..++||+|||||++|+++|+.|++.    |++|+|+||....
T Consensus         3 m~~~~dVvVIG~Gi~Gls~A~~La~~----G~~V~vle~~~~~   41 (363)
T 1c0p_A            3 MHSQKRVVVLGSGVIGLSSALILARK----GYSVHILARDLPE   41 (363)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSCTT
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHhC----CCEEEEEeccCCC
Confidence            34578999999999999999999996    9999999998743

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=99.32  E-value=7.1e-11  Score=122.63  Aligned_cols=73  Identities=16%  Similarity=0.276  Sum_probs=50.4

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCC--cEEEEEcCCCCCCCCCCCCC-CCCC--C--CcEEEeCHhHHHHHHHcCCc
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKH--LSVAIIDSNPALGKSNFIKK-EDPP--D--PRVSTVTPATISFFKEIGAW  127 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G--~~V~v~E~~~~~~~~~~~~~-~~~~--~--~~~~~l~~~~~~~l~~lgl~  127 (515)
                      .+||+|||||++||++|+.|++.    |  ++|+|||+.+.++....... .+..  .  .......+...++++++|+.
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~----g~~~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~l~~~lg~~   79 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERA----FPDLNITLLEAGERLGGKVATYREDGFTIERGPDSYVARKHILTDLIEAIGLG   79 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHH----CTTSEEEEECSSSSSBTTCCEECSTTCCEESSCCCEETTSTHHHHHHHHTTCG
T ss_pred             cccEEEECCCHHHHHHHHHHHHh----CCCCCEEEEECCCCCCceeEEEeeCCEEEecCchhhhcccHHHHHHHHHcCCc
Confidence            57999999999999999999996    7  99999999887653221000 0000  0  01122345677899999986


Q ss_pred             hhhh
Q 010200          128 QYVQ  131 (515)
Q Consensus       128 ~~~~  131 (515)
                      ..+.
T Consensus        80 ~~~~   83 (475)
T 3lov_A           80 EKLV   83 (475)
T ss_dssp             GGEE
T ss_pred             ceEe
Confidence            6543

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.31  E-value=1.5e-11  Score=110.07  Aligned_cols=118  Identities=20%  Similarity=0.204  Sum_probs=89.2

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      +||+|||||++|+.+|..|++.    |.+|+|+|+.+.......                             .+.    
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~----g~~v~lie~~~~~~~~~~-----------------------------~~~----   44 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARA----GLKVLVLDGGRSKVKGVS-----------------------------RVP----   44 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT----TCCEEEEECSCCTTTTCS-----------------------------CCC----
T ss_pred             CeEEEECCCHHHHHHHHHHHHC----CCcEEEEeCCCCcccCch-----------------------------hhh----
Confidence            7999999999999999999996    899999999873310000                             000    


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                       .                ++  ...     ..+....+.+.+.+.+++.| ++++++ +|++++.               
T Consensus        45 -~----------------~~--~~~-----~~~~~~~~~~~l~~~~~~~g-v~v~~~-~v~~i~~---------------   83 (180)
T 2ywl_A           45 -N----------------YP--GLL-----DEPSGEELLRRLEAHARRYG-AEVRPG-VVKGVRD---------------   83 (180)
T ss_dssp             -C----------------ST--TCT-----TCCCHHHHHHHHHHHHHHTT-CEEEEC-CCCEEEE---------------
T ss_pred             -c----------------cC--CCc-----CCCCHHHHHHHHHHHHHHcC-CEEEeC-EEEEEEE---------------
Confidence             0                00  000     01345788899999999888 999999 9999976               


Q ss_pred             ccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCc
Q 010200          216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFK  257 (515)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~  257 (515)
                           +++.+.+.+++| ++.+|+||.|+|.++.+++.++.+
T Consensus        84 -----~~~~~~v~~~~g-~i~ad~vI~A~G~~~~~~~~~g~~  119 (180)
T 2ywl_A           84 -----MGGVFEVETEEG-VEKAERLLLCTHKDPTLPSLLGLT  119 (180)
T ss_dssp             -----CSSSEEEECSSC-EEEEEEEEECCTTCCHHHHHHTCC
T ss_pred             -----cCCEEEEEECCC-EEEECEEEECCCCCCCccccCCCC
Confidence                 334478888888 899999999999999887877654

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=99.29  E-value=9.8e-12  Score=128.15  Aligned_cols=85  Identities=16%  Similarity=0.189  Sum_probs=56.7

Q ss_pred             EEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCe-eEEEcCCCcEE--EeeEEEE
Q 010200          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL-AKLDLSDGTSL--YAKLVVG  242 (515)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~g~~~--~ad~vV~  242 (515)
                      ..++...+...|.+.+++.| ++|+++++|++++..+.. ....+..+.    ...+.. +.|.+.+| ++  .||.||.
T Consensus       176 ~~~~~~~l~~~L~~~~~~~G-v~i~~~~~V~~i~~~~~~-~~~~~~~~~----~~~~~~v~~V~t~~g-~i~~~Ad~VV~  248 (448)
T 3axb_A          176 GFLDAEKVVDYYYRRASGAG-VEFIFGRRVVGVELKPRV-ELGIEGEPL----PWQEARASAAVLSDG-TRVEVGEKLVV  248 (448)
T ss_dssp             EECCHHHHHHHHHHHHHHTT-CEEEESCCEEEEEEEESS-CCCCTTSSC----TTSCEEEEEEEETTS-CEEEEEEEEEE
T ss_pred             eEEcHHHHHHHHHHHHHhCC-CEEEcCCeEEEEEecccc-ccccccccc----ccCCCceEEEEeCCC-EEeecCCEEEE
Confidence            45677899999999999998 999999999999751000 000000000    001123 35777777 58  9999999


Q ss_pred             ecCCCch-hhhhcCCc
Q 010200          243 ADGGKSR-VRELAGFK  257 (515)
Q Consensus       243 AdG~~S~-vr~~l~~~  257 (515)
                      |+|.+|. +.+.++..
T Consensus       249 AtG~~s~~l~~~~g~~  264 (448)
T 3axb_A          249 AAGVWSNRLLNPLGID  264 (448)
T ss_dssp             CCGGGHHHHHGGGTCC
T ss_pred             CCCcCHHHHHHHcCCC
Confidence            9999987 66666543

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.28  E-value=3.5e-12  Score=135.56  Aligned_cols=157  Identities=15%  Similarity=0.038  Sum_probs=92.8

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhh--
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYV--  130 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~--  130 (515)
                      ..++||||||||++||++|+.|++.    |++|+||||.+.++.....      .+.++....  ....+++|+.+..  
T Consensus       124 ~~~~DVvVVGaG~aGl~aA~~la~~----G~~V~vlEk~~~~gg~s~~------a~gg~~~~~--~~~~~~~g~~ds~~~  191 (571)
T 1y0p_A          124 HDTVDVVVVGSGGAGFSAAISATDS----GAKVILIEKEPVIGGNAKL------AAGGMNAAW--TDQQKAKKITDSPEL  191 (571)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSSCTTGGG------CCSCEECSS--CHHHHHTTCCCCHHH
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHC----CCcEEEEeCCCCCCCchhh------cCceEEeCC--CHHHHHhCCCCCHHH
Confidence            3468999999999999999999996    9999999999877432211      111222111  1112222221111  


Q ss_pred             --------------------------------hhhhccccceEEEEeCCCccceeeecccCCCCcceEE-----echHHH
Q 010200          131 --------------------------------QQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCV-----VENKVL  173 (515)
Q Consensus       131 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----i~r~~l  173 (515)
                                                      .+.+. ++..+.   ..+          .......+.     .....+
T Consensus       192 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv-~~~~~~---~~~----------g~~~~r~~~~~~g~~~g~~l  257 (571)
T 1y0p_A          192 MFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAMGA-DLTDVG---MMG----------GASVNRAHRPTGGAGVGAHV  257 (571)
T ss_dssp             HHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTC-CCCEEE---CCT----------TCSSCCEEESTTTCCHHHHH
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHccHHHHHHHHhcCC-CCccCc---ccC----------CcCCCeeEecCCCCCCHHHH
Confidence                                            11111 111100   000          000000111     345789


Q ss_pred             HHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCc--EEEeeEEEEecCCCchhh
Q 010200          174 HSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT--SLYAKLVVGADGGKSRVR  251 (515)
Q Consensus       174 ~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~--~~~ad~vV~AdG~~S~vr  251 (515)
                      ...|.+.+++.| ++|+++++|+++..+           +++     ...++.+...+|+  ++.+|.||+|+|.+|..+
T Consensus       258 ~~~L~~~~~~~g-v~i~~~~~v~~l~~~-----------~~g-----~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~~n~  320 (571)
T 1y0p_A          258 VQVLYDNAVKRN-IDLRMNTRGIEVLKD-----------DKG-----TVKGILVKGMYKGYYWVKADAVILATGGFAKNN  320 (571)
T ss_dssp             HHHHHHHHHHTT-CEEESSEEEEEEEEC-----------TTS-----CEEEEEEEETTTEEEEEECSEEEECCCCCTTCH
T ss_pred             HHHHHHHHHhcC-CEEEeCCEeeEeEEc-----------CCC-----eEEEEEEEeCCCcEEEEECCeEEEeCCCcccCH
Confidence            999999999988 999999999999861           001     1112444433665  689999999999999754


Q ss_pred             h
Q 010200          252 E  252 (515)
Q Consensus       252 ~  252 (515)
                      +
T Consensus       321 ~  321 (571)
T 1y0p_A          321 E  321 (571)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.28  E-value=1.2e-11  Score=115.58  Aligned_cols=132  Identities=20%  Similarity=0.218  Sum_probs=89.9

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      +++||+|||||++|+.+|+.|++.    |.+|+|+|+........|.     ....  .+..  ..+++++.        
T Consensus         2 ~~~dVvVVGgG~aGl~aA~~la~~----g~~v~lie~~~~~~G~~~~-----~~~~--~~~~--~~~~~~~~--------   60 (232)
T 2cul_A            2 AAYQVLIVGAGFSGAETAFWLAQK----GVRVGLLTQSLDAVMMPFL-----PPKP--PFPP--GSLLERAY--------   60 (232)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHT----TCCEEEEESCGGGTTCCSS-----CCCS--CCCT--TCHHHHHC--------
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC----CCCEEEEecCCCcCCcccC-----cccc--ccch--hhHHhhhc--------
Confidence            468999999999999999999996    9999999998432111110     0000  0000  00111100        


Q ss_pred             hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (515)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~  213 (515)
                                 +              ...   .  ++..+...|.+.+++.++++++ +++|+++..             
T Consensus        61 -----------d--------------~~g---~--~~~~~~~~l~~~~~~~~gv~i~-~~~v~~i~~-------------   96 (232)
T 2cul_A           61 -----------D--------------PKD---E--RVWAFHARAKYLLEGLRPLHLF-QATATGLLL-------------   96 (232)
T ss_dssp             -----------C--------------TTC---C--CHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEE-------------
T ss_pred             -----------c--------------CCC---C--CHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEE-------------
Confidence                       0              000   0  6788999999999987339988 579999976             


Q ss_pred             CcccccccCCe-eEEEcCCCcEEEeeEEEEecCCCchhhhhcCCc
Q 010200          214 SATTLFTKGHL-AKLDLSDGTSLYAKLVVGADGGKSRVRELAGFK  257 (515)
Q Consensus       214 ~~~~~~~~~~~-~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~  257 (515)
                             +++. +.+.+.+|+++.||+||.|+|.+|..+..+|..
T Consensus        97 -------~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~~~G~~  134 (232)
T 2cul_A           97 -------EGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGV  134 (232)
T ss_dssp             -------ETTEEEEEEETTSCCEECSEEEECCTTCSSCEEEETTE
T ss_pred             -------eCCEEEEEEECCCCEEECCEEEECCCCChhhceecCCc
Confidence                   2233 457778888899999999999999988776543

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.28  E-value=9.4e-11  Score=122.57  Aligned_cols=64  Identities=17%  Similarity=0.302  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCe-eEEEcCCCcEEEeeEEEEecCCCch
Q 010200          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL-AKLDLSDGTSLYAKLVVGADGGKSR  249 (515)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~g~~~~ad~vV~AdG~~S~  249 (515)
                      ..+.+.|.+.+++.| ++|+++++|++|+.                    +++. ..|+++||+++.||.||.+.+.+..
T Consensus       221 ~~l~~aL~~~~~~~G-g~I~~~~~V~~I~~--------------------~~~~~~gV~~~~g~~~~ad~VV~~a~~~~~  279 (501)
T 4dgk_A          221 GALVQGMIKLFQDLG-GEVVLNARVSHMET--------------------TGNKIEAVHLEDGRRFLTQAVASNADVVHT  279 (501)
T ss_dssp             HHHHHHHHHHHHHTT-CEEECSCCEEEEEE--------------------ETTEEEEEEETTSCEEECSCEEECCC----
T ss_pred             cchHHHHHHHHHHhC-CceeeecceeEEEe--------------------eCCeEEEEEecCCcEEEcCEEEECCCHHHH
Confidence            467788999999998 89999999999987                    3344 4588899999999999999988887


Q ss_pred             hhhhcC
Q 010200          250 VRELAG  255 (515)
Q Consensus       250 vr~~l~  255 (515)
                      .++.++
T Consensus       280 ~~~Ll~  285 (501)
T 4dgk_A          280 YRDLLS  285 (501)
T ss_dssp             ------
T ss_pred             HHHhcc
Confidence            776663

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.27  E-value=1.4e-11  Score=123.19  Aligned_cols=126  Identities=20%  Similarity=0.208  Sum_probs=90.5

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhh
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (515)
                      +..+||+||||||+|+++|+.|++.    |++|+|||+.+.++              +      ...         ..  
T Consensus        12 ~~~~dvvIIG~G~aGl~aA~~l~~~----g~~v~lie~~~~~g--------------g------~~~---------~~--   56 (360)
T 3ab1_A           12 HDMRDLTIIGGGPTGIFAAFQCGMN----NISCRIIESMPQLG--------------G------QLA---------AL--   56 (360)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSSC--------------H------HHH---------HT--
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhC----CCCEEEEecCCCCC--------------C------ccc---------cc--
Confidence            4568999999999999999999996    99999999987651              0      000         00  


Q ss_pred             hhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCC
Q 010200          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (515)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~  212 (515)
                        . +..  ..++...             .   ..+.+..+...|.+.+.+.+ ++++++++|+.+..            
T Consensus        57 --~-~~~--~~~~~~~-------------~---~~~~~~~~~~~l~~~~~~~~-~~~~~~~~v~~i~~------------  102 (360)
T 3ab1_A           57 --Y-PEK--HIYDVAG-------------F---PEVPAIDLVESLWAQAERYN-PDVVLNETVTKYTK------------  102 (360)
T ss_dssp             --C-TTS--EECCSTT-------------C---SSEEHHHHHHHHHHHHHTTC-CEEECSCCEEEEEE------------
T ss_pred             --C-CCc--ccccCCC-------------C---CCCCHHHHHHHHHHHHHHhC-CEEEcCCEEEEEEE------------
Confidence              0 000  0010000             0   01457788899999998887 89999999999976            


Q ss_pred             CCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhc
Q 010200          213 PSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELA  254 (515)
Q Consensus       213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l  254 (515)
                             +....+++.+.+|.++.+|.||+|+|.+|..++.+
T Consensus       103 -------~~~~~~~v~~~~g~~~~~~~li~AtG~~~~~~~~~  137 (360)
T 3ab1_A          103 -------LDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKL  137 (360)
T ss_dssp             -------CTTSCEEEEETTSCEEEEEEEEECCTTCSCCBCCC
T ss_pred             -------CCCceEEEEECCCcEEEeeEEEEccCCCcCCCCCC
Confidence                   11135788888888899999999999988665554

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.27  E-value=1.1e-11  Score=122.42  Aligned_cols=125  Identities=23%  Similarity=0.216  Sum_probs=90.0

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhh
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (515)
                      ++++||+||||||+|+++|+.|++.    |++|+|||+.+.++              +      ..  .       ..  
T Consensus         3 ~~~~~vvIIG~G~aGl~aA~~l~~~----g~~v~lie~~~~~g--------------g------~~--~-------~~--   47 (335)
T 2zbw_A            3 ADHTDVLIVGAGPTGLFAGFYVGMR----GLSFRFVDPLPEPG--------------G------QL--T-------AL--   47 (335)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHT----TCCEEEEESSSSSC--------------H------HH--H-------HT--
T ss_pred             CCcCcEEEECCCHHHHHHHHHHHhC----CCCEEEEeCCCCCC--------------C------ee--e-------cc--
Confidence            3568999999999999999999995    89999999987651              0      00  0       00  


Q ss_pred             hhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCC
Q 010200          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (515)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~  212 (515)
                        . +..  .+++...             .   ..+.+..+...|.+.+.+.+ ++++++++|+.++.            
T Consensus        48 --~-~~~--~~~~~~~-------------~---~~~~~~~~~~~l~~~~~~~~-~~~~~~~~v~~i~~------------   93 (335)
T 2zbw_A           48 --Y-PEK--YIYDVAG-------------F---PKVYAKDLVKGLVEQVAPFN-PVYSLGERAETLER------------   93 (335)
T ss_dssp             --C-TTS--EECCSTT-------------C---SSEEHHHHHHHHHHHHGGGC-CEEEESCCEEEEEE------------
T ss_pred             --C-CCc--eeeccCC-------------C---CCCCHHHHHHHHHHHHHHcC-CEEEeCCEEEEEEE------------
Confidence              0 000  0110000             0   01456788888999888887 89999999999976            


Q ss_pred             CCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhc
Q 010200          213 PSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELA  254 (515)
Q Consensus       213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l  254 (515)
                              ..+.+++.+.+|.++.+|.||.|+|.+|...+..
T Consensus        94 --------~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~p~~~  127 (335)
T 2zbw_A           94 --------EGDLFKVTTSQGNAYTAKAVIIAAGVGAFEPRRI  127 (335)
T ss_dssp             --------ETTEEEEEETTSCEEEEEEEEECCTTSEEEECCC
T ss_pred             --------CCCEEEEEECCCCEEEeCEEEECCCCCCCCCCCC
Confidence                    2236778888888899999999999987655544

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.26  E-value=1.5e-10  Score=120.17  Aligned_cols=56  Identities=18%  Similarity=0.167  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCe-eEEEcCCCcEEEeeEEEEecCCCch
Q 010200          172 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL-AKLDLSDGTSLYAKLVVGADGGKSR  249 (515)
Q Consensus       172 ~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~g~~~~ad~vV~AdG~~S~  249 (515)
                      .+.+.|.+.+.+.| ++|+++++|++|+.                    .++. +.|++ ++.++.||.||.|.+.+..
T Consensus       235 ~l~~~l~~~l~~~g-~~i~~~~~V~~i~~--------------------~~~~~~~v~~-~~~~~~ad~vv~a~p~~~~  291 (477)
T 3nks_A          235 MLPQALETHLTSRG-VSVLRGQPVCGLSL--------------------QAEGRWKVSL-RDSSLEADHVISAIPASVL  291 (477)
T ss_dssp             HHHHHHHHHHHHTT-CEEECSCCCCEEEE--------------------CGGGCEEEEC-SSCEEEESEEEECSCHHHH
T ss_pred             HHHHHHHHHHHhcC-CEEEeCCEEEEEEE--------------------cCCceEEEEE-CCeEEEcCEEEECCCHHHH
Confidence            47788888888887 89999999999986                    2233 77776 4457999999999987544

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=99.26  E-value=3.9e-11  Score=126.54  Aligned_cols=157  Identities=15%  Similarity=0.177  Sum_probs=99.1

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC-CCCCCCCCCCCCCCCCcEEEeC-HhHHHHHHHcCC-chhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP-ALGKSNFIKKEDPPDPRVSTVT-PATISFFKEIGA-WQYV  130 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~-~~~~~~~~~~~~~~~~~~~~l~-~~~~~~l~~lgl-~~~~  130 (515)
                      .++||||||||+||+++|+.|++.    |.+|+|+|+.. ..+..+|..       ...++. ....+.+..++- ....
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~----G~kVlLIEk~~~~iG~~~Cnp-------s~ggia~~~lv~ei~algg~~~~~   95 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARM----GQQTLLLTHNIDTLGQMSCNP-------AIGGIGKGHLVKEVDALGGLMAKA   95 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHT----TCCEEEEESCGGGTTCCSSSS-------EEESTTHHHHHHHHHHTTCSHHHH
T ss_pred             CcCCEEEECChHHHHHHHHHHHhC----CCCEEEEeecccccccccccc-------cccchhhHHHHHHHHHhccHHHHH
Confidence            469999999999999999999996    99999999985 343334411       011111 122333444432 2211


Q ss_pred             hhhhccccceEEE--EeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcc
Q 010200          131 QQHRHAYFDKMQV--WDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSIS  208 (515)
Q Consensus       131 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~  208 (515)
                      ...     ..+.+  .......         ........+++..+...|.+.+++..+++|+ +++|+++..        
T Consensus        96 ~d~-----~gi~f~~l~~~kgp---------av~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~--------  152 (651)
T 3ces_A           96 IDQ-----AGIQFRILNASKGP---------AVRATRAQADRVLYRQAVRTALENQPNLMIF-QQAVEDLIV--------  152 (651)
T ss_dssp             HHH-----HEEEEEEESTTSCG---------GGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEE--------
T ss_pred             hhh-----cccchhhhhcccCc---------ccccchhhCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEe--------
Confidence            111     11221  1110000         0011124688889999999999884339984 679999975        


Q ss_pred             cCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcC
Q 010200          209 VDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAG  255 (515)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~  255 (515)
                                 +++..+.|.+.+|.++.||.||+|+|.+|..+...|
T Consensus       153 -----------e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~~~~i~G  188 (651)
T 3ces_A          153 -----------ENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIG  188 (651)
T ss_dssp             -----------SSSBEEEEEETTSEEEEEEEEEECCSTTTCCEEECC
T ss_pred             -----------cCCEEEEEEECCCCEEECCEEEEcCCCCccCccccC
Confidence                       122334677788888999999999999998776654

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.25  E-value=2.4e-11  Score=120.87  Aligned_cols=130  Identities=20%  Similarity=0.291  Sum_probs=88.8

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      .+||+|||||++|+++|+.|++.    |++|+|||+.+.++....                +         .++.+.   
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~----g~~v~vie~~~~~gg~~~----------------~---------~~~~~~---   50 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRS----GLSYVILDAEASPGGAWQ----------------H---------AWHSLH---   50 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHS----SCCEEEECCSSSSSGGGG----------------G---------SCTTCB---
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC----CCCEEEEECCCCCCCccc----------------C---------CCCCcE---
Confidence            58999999999999999999996    999999999986631100                0         000000   


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                              +..  ......++..... ........+..+...|.+.+++.+ ++++++++|+++..              
T Consensus        51 --------~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~v~~i~~--------------  104 (357)
T 4a9w_A           51 --------LFS--PAGWSSIPGWPMP-ASQGPYPARAEVLAYLAQYEQKYA-LPVLRPIRVQRVSH--------------  104 (357)
T ss_dssp             --------CSS--CGGGSCCSSSCCC-CCSSSSCBHHHHHHHHHHHHHHTT-CCEECSCCEEEEEE--------------
T ss_pred             --------ecC--chhhhhCCCCCCC-CCccCCCCHHHHHHHHHHHHHHcC-CEEEcCCEEEEEEE--------------
Confidence                    000  0000000000000 001123467889999999999887 89999999999976              


Q ss_pred             cccccccCCeeE-EEcCCCcEEEeeEEEEecCCCch
Q 010200          215 ATTLFTKGHLAK-LDLSDGTSLYAKLVVGADGGKSR  249 (515)
Q Consensus       215 ~~~~~~~~~~~~-v~~~~g~~~~ad~vV~AdG~~S~  249 (515)
                            ....+. |.+++| ++.+|.||.|+|.+|.
T Consensus       105 ------~~~~~~~v~~~~g-~~~~d~vV~AtG~~~~  133 (357)
T 4a9w_A          105 ------FGERLRVVARDGR-QWLARAVISATGTWGE  133 (357)
T ss_dssp             ------ETTEEEEEETTSC-EEEEEEEEECCCSGGG
T ss_pred             ------CCCcEEEEEeCCC-EEEeCEEEECCCCCCC
Confidence                  445677 888888 7999999999998774

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=99.25  E-value=7.7e-11  Score=124.24  Aligned_cols=158  Identities=15%  Similarity=0.116  Sum_probs=96.1

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC-CCCCCCCCCCCCCCCCcEEEeC-HhHHHHHHHcC-Cch
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP-ALGKSNFIKKEDPPDPRVSTVT-PATISFFKEIG-AWQ  128 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~-~~~~~~~~~~~~~~~~~~~~l~-~~~~~~l~~lg-l~~  128 (515)
                      ....+||+|||||+||+++|+.|++.    |.+|+|+|+.. .++..+|.       ....++. ....+.+..++ +..
T Consensus        18 ~~~~yDVIVIGgG~AGl~AAlaLAr~----G~kVlLIEk~~~~iG~~~c~-------ps~gGia~~~lv~el~al~g~~~   86 (641)
T 3cp8_A           18 GSHMYDVIVVGAGHAGCEAALAVARG----GLHCLLITSDLSAVARMSCN-------PAIGGVAKGQITREIDALGGEMG   86 (641)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHT----TCCEEEEESCGGGTTCCSSC-------SEEECHHHHHHHHHHHHHTCSHH
T ss_pred             ccCcCCEEEECccHHHHHHHHHHHHC----CCcEEEEEecccccCCCccc-------cchhhhhHHHHHHHHHhcccHHH
Confidence            34569999999999999999999996    99999999985 34333331       1111111 11222222222 222


Q ss_pred             hhhhhhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcc
Q 010200          129 YVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSIS  208 (515)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~  208 (515)
                      .....     ..+.+.......       ..........+++..+...|.+.+++..+++++. .+|+++..        
T Consensus        87 ~~~d~-----~gi~f~~l~~~k-------gpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~-~~V~~L~~--------  145 (641)
T 3cp8_A           87 KAIDA-----TGIQFRMLNRSK-------GPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQ-DTVIGVSA--------  145 (641)
T ss_dssp             HHHHH-----HEEEEEEECSSS-------CTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEE-CCEEEEEE--------
T ss_pred             HHHHh-----cCCchhhccccc-------CccccchhhhcCHHHHHHHHHHHHHhCCCCEEEe-eEEEEEEe--------
Confidence            11111     112221100000       0000112246889999999999998864499864 58999875        


Q ss_pred             cCCCCCcccccccCCeeE-EEcCCCcEEEeeEEEEecCCCchhhhh
Q 010200          209 VDSTPSATTLFTKGHLAK-LDLSDGTSLYAKLVVGADGGKSRVREL  253 (515)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~-v~~~~g~~~~ad~vV~AdG~~S~vr~~  253 (515)
                                  +++.+. |.+.+|.++.||.||+|+|.++..+-.
T Consensus       146 ------------d~g~V~GV~t~~G~~i~Ad~VVLATG~~s~~~i~  179 (641)
T 3cp8_A          146 ------------NSGKFSSVTVRSGRAIQAKAAILACGTFLNGLIH  179 (641)
T ss_dssp             ------------ETTEEEEEEETTSCEEEEEEEEECCTTCBTCEEE
T ss_pred             ------------cCCEEEEEEECCCcEEEeCEEEECcCCCCCccce
Confidence                        234444 777888899999999999999875443

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.24  E-value=8.3e-11  Score=120.22  Aligned_cols=59  Identities=15%  Similarity=0.116  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeE-EEcCCCcEEEeeEEEEecCCCch
Q 010200          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAK-LDLSDGTSLYAKLVVGADGGKSR  249 (515)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~g~~~~ad~vV~AdG~~S~  249 (515)
                      ..+.+.|.+.+++.| ++|+++++|++|+.                    +++.++ |.+ +|+++.||.||.|.|.+..
T Consensus       196 ~~l~~~l~~~~~~~G-~~i~~~~~V~~i~~--------------------~~~~~~gv~~-~g~~~~ad~VV~a~~~~~~  253 (425)
T 3ka7_A          196 KGIIDALETVISANG-GKIHTGQEVSKILI--------------------ENGKAAGIIA-DDRIHDADLVISNLGHAAT  253 (425)
T ss_dssp             HHHHHHHHHHHHHTT-CEEECSCCEEEEEE--------------------ETTEEEEEEE-TTEEEECSEEEECSCHHHH
T ss_pred             HHHHHHHHHHHHHcC-CEEEECCceeEEEE--------------------ECCEEEEEEE-CCEEEECCEEEECCCHHHH
Confidence            457888889999888 99999999999987                    334454 655 4778999999999998876


Q ss_pred             hh
Q 010200          250 VR  251 (515)
Q Consensus       250 vr  251 (515)
                      .+
T Consensus       254 ~~  255 (425)
T 3ka7_A          254 AV  255 (425)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=99.24  E-value=8e-11  Score=114.38  Aligned_cols=155  Identities=17%  Similarity=0.177  Sum_probs=97.1

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      ..+||+||||||+||++|+.|++.+  +|++|+|+|+.+.++...+..   ........+.+.....|+++|+.      
T Consensus        64 ~~~dv~IiG~G~aGl~aA~~la~~~--~g~~V~v~e~~~~~ggg~~~~---g~~~~~~~~~~~~~~~L~~~Gv~------  132 (326)
T 2gjc_A           64 AVSDVIIVGAGSSGLSAAYVIAKNR--PDLKVCIIESSVAPGGGSWLG---GQLFSAMVMRKPAHLFLQELEIP------  132 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHC--TTSCEEEECSSSSCCTTTTCC---GGGCCCEEEETTTHHHHHHTTCC------
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcC--CCCeEEEEecCcccccccccc---CcccchhhhhhHHHHHHHhhCcc------
Confidence            4579999999999999999999842  289999999998775333211   11112234445566677766642      


Q ss_pred             hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (515)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~  213 (515)
                          +.     .. +  ..            ....+...+...|.+.+.+.++++++.+++|+++..+         .+.
T Consensus       133 ----~~-----~~-g--~~------------~~~~~~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~---------~~~  179 (326)
T 2gjc_A          133 ----YE-----DE-G--DY------------VVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTR---------PPT  179 (326)
T ss_dssp             ----CE-----EC-S--SE------------EEESCHHHHHHHHHHHHHTSTTEEEETTEEEEEEEEC---------CCC
T ss_pred             ----cc-----cC-C--Ce------------EEEcchHHHHHHHHHHHHHhcCcEEEecceeeeeeec---------ccc
Confidence                11     00 0  00            0112456788999999988745999999999999871         100


Q ss_pred             C-cccccccCCeeEEEc------------CCCcEEEe---------------eEEEEecCCCchhhhhcC
Q 010200          214 S-ATTLFTKGHLAKLDL------------SDGTSLYA---------------KLVVGADGGKSRVRELAG  255 (515)
Q Consensus       214 ~-~~~~~~~~~~~~v~~------------~~g~~~~a---------------d~vV~AdG~~S~vr~~l~  255 (515)
                      + +   .....++.+..            .++.++.|               |+||+|+|..|++.+.+.
T Consensus       180 ~~g---~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~~~~~~~VV~ATG~~~~~~~~~~  246 (326)
T 2gjc_A          180 EKG---EVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFGAFCA  246 (326)
T ss_dssp             --------CEEEEEEEEHHHHTC---CCCCCCEEEEESCCCSSSCCCSSTTCCEEEECCCCC--CCSHHH
T ss_pred             cCC---CcEEEEEEecceeecccccceeccCceEEEEeeccccccccccccCCEEEECcCCCchHHHHHH
Confidence            0 0   00011222221            13457899               999999999999988763

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.24  E-value=3.4e-10  Score=115.60  Aligned_cols=61  Identities=13%  Similarity=0.218  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                      ..+.+.|.+.+++.| ++|+++++|++|+.                    +++.+ |. .+|+++.||.||.|.|.+...
T Consensus       189 ~~l~~~l~~~~~~~G-~~i~~~~~V~~i~~--------------------~~~~v-V~-~~g~~~~ad~Vv~a~~~~~~~  245 (421)
T 3nrn_A          189 KAVIDELERIIMENK-GKILTRKEVVEINI--------------------EEKKV-YT-RDNEEYSFDVAISNVGVRETV  245 (421)
T ss_dssp             HHHHHHHHHHHHTTT-CEEESSCCEEEEET--------------------TTTEE-EE-TTCCEEECSEEEECSCHHHHH
T ss_pred             HHHHHHHHHHHHHCC-CEEEcCCeEEEEEE--------------------ECCEE-EE-eCCcEEEeCEEEECCCHHHHH
Confidence            467788888898888 99999999999976                    33456 54 567789999999999988654


Q ss_pred             hhhcC
Q 010200          251 RELAG  255 (515)
Q Consensus       251 r~~l~  255 (515)
                       +.++
T Consensus       246 -~ll~  249 (421)
T 3nrn_A          246 -KLIG  249 (421)
T ss_dssp             -HHHC
T ss_pred             -HhcC
Confidence             4444

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=99.21  E-value=9.3e-11  Score=123.17  Aligned_cols=156  Identities=16%  Similarity=0.188  Sum_probs=99.1

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC-CCCCCCCCCCCCCCCCcEEEeC-HhHHHHHHHcC-Cchhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP-ALGKSNFIKKEDPPDPRVSTVT-PATISFFKEIG-AWQYV  130 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~-~~~~~~~~~~~~~~~~~~~~l~-~~~~~~l~~lg-l~~~~  130 (515)
                      ..+||+|||||+||+++|+.|++.    |.+|+|+|+.. ..+..+|.       ....++. ....+.++.++ .+...
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~----G~kVlLIEk~~~~iG~~~Cn-------ps~GGia~g~lv~eldalgg~~~~~   94 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARM----GAKTAMFVLNADTIGQMSCN-------PAIGGIAKGIVVREIDALGGEMGKA   94 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHT----TCCEEEEESCGGGTTCCCSC-------SEEECTTHHHHHHHHHHHTCSHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC----CCCEEEEEecccccCCcCcc-------ccccccchHHHHHHHHHhhhHHHHH
Confidence            469999999999999999999996    99999999985 34433341       1111111 12233344443 22222


Q ss_pred             hhhhccccceEEEE--eCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcc
Q 010200          131 QQHRHAYFDKMQVW--DYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSIS  208 (515)
Q Consensus       131 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~  208 (515)
                      ...     ..+.+.  ......         ........+++..+...|.+.+++..+++|+ +++|+++..        
T Consensus        95 ~d~-----~gi~f~~l~~~kGp---------av~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~--------  151 (637)
T 2zxi_A           95 IDQ-----TGIQFKMLNTRKGK---------AVQSPRAQADKKRYREYMKKVCENQENLYIK-QEEVVDIIV--------  151 (637)
T ss_dssp             HHH-----HEEEEEEESTTSCG---------GGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEE--------
T ss_pred             hhh-----cccceeecccccCc---------cccchhhhCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEe--------
Confidence            221     112211  110000         0011224678899999999999885349985 679999976        


Q ss_pred             cCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhc
Q 010200          209 VDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELA  254 (515)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l  254 (515)
                                 +++....|.+.+|.++.||.||+|+|.++..+...
T Consensus       152 -----------e~g~V~GV~t~dG~~i~AdaVVLATG~~s~~~~~~  186 (637)
T 2zxi_A          152 -----------KNNQVVGVRTNLGVEYKTKAVVVTTGTFLNGVIYI  186 (637)
T ss_dssp             -----------SSSBEEEEEETTSCEEECSEEEECCTTCBTCEEEE
T ss_pred             -----------cCCEEEEEEECCCcEEEeCEEEEccCCCccCceec
Confidence                       12233457778888999999999999998876554

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=99.20  E-value=1.2e-09  Score=113.41  Aligned_cols=74  Identities=24%  Similarity=0.273  Sum_probs=49.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCC-CC--CCCcE-E-EeCHhHHHHHHHcCCch
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKE-DP--PDPRV-S-TVTPATISFFKEIGAWQ  128 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~-~~--~~~~~-~-~l~~~~~~~l~~lgl~~  128 (515)
                      ..+||+|||||++||++|+.|++.    |++|+|||+...++.+...... +.  ..+.. + .-.+...++++++|+.+
T Consensus        15 ~~~~v~iiG~G~~Gl~aa~~l~~~----g~~v~v~E~~~~~GGr~~t~~~~g~~~~~g~~~~~~~~~~~~~~~~~~gl~~   90 (478)
T 2ivd_A           15 TGMNVAVVGGGISGLAVAHHLRSR----GTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLDREPATRALAAALNLEG   90 (478)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHTT----TCCEEEECSSSSSBTTCCEEEETTEEEESSCCCEETTCHHHHHHHHHTTCGG
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHC----CCCEEEEEcCCCCCceeeeeccCCeeeecChhhhhhhhHHHHHHHHHcCCcc
Confidence            468999999999999999999996    9999999999887533210000 00  00000 1 11467788999999865


Q ss_pred             hhh
Q 010200          129 YVQ  131 (515)
Q Consensus       129 ~~~  131 (515)
                      .+.
T Consensus        91 ~~~   93 (478)
T 2ivd_A           91 RIR   93 (478)
T ss_dssp             GEE
T ss_pred             eee
Confidence            443

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=99.18  E-value=6.3e-11  Score=125.53  Aligned_cols=110  Identities=13%  Similarity=0.060  Sum_probs=67.1

Q ss_pred             EechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCe-eEEEcC---CCc--EEEeeEE
Q 010200          167 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL-AKLDLS---DGT--SLYAKLV  240 (515)
Q Consensus       167 ~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~---~g~--~~~ad~v  240 (515)
                      .++...+...|.+.+.+.| ++|+.+++|++++.                    +++. +.|.+.   +|+  ++.||.|
T Consensus       184 ~v~~~~l~~~l~~~a~~~G-a~i~~~t~V~~l~~--------------------~~~~v~gV~~~d~~tg~~~~i~A~~V  242 (571)
T 2rgh_A          184 RNNDARLVIDNIKKAAEDG-AYLVSKMKAVGFLY--------------------EGDQIVGVKARDLLTDEVIEIKAKLV  242 (571)
T ss_dssp             ECCHHHHHHHHHHHHHHTT-CEEESSEEEEEEEE--------------------ETTEEEEEEEEETTTCCEEEEEBSCE
T ss_pred             eEchHHHHHHHHHHHHHcC-CeEEeccEEEEEEE--------------------eCCEEEEEEEEEcCCCCEEEEEcCEE
Confidence            3567788899999999988 99999999999986                    2222 334432   233  7999999


Q ss_pred             EEecCCCch-hhhhcCCccc-cccCCceEEEEEEEeecC-C-ceEEEEe--cCCCcEEEEecC
Q 010200          241 VGADGGKSR-VRELAGFKTT-GWSYSQNAIICTVEHNKE-N-YCAWQRF--LPAGPIALLPIG  297 (515)
Q Consensus       241 V~AdG~~S~-vr~~l~~~~~-~~~~~~~~~~~~~~~~~~-~-~~~~~~~--~~~g~~~~~p~~  297 (515)
                      |.|+|.||. +++..+.... ..-.........++.... . ...+...  .++..++++|..
T Consensus       243 V~AaG~ws~~l~~~~g~~~~~~~i~p~rG~~l~~~~~~~~~~~~~~~~~~~~dgr~~~~~P~~  305 (571)
T 2rgh_A          243 INTSGPWVDKVRNLNFTRPVSPKMRPTKGIHLVVDAKKLPVPQPTYFDTGKQDGRMVFAIPRE  305 (571)
T ss_dssp             EECCGGGHHHHHTTCCSSCCCCCBCCEEEEEEEEEGGGSCCSSCEEEECSSSSSCEEEEEEET
T ss_pred             EECCChhHHHHHHhhccCccCceeeccceEEEEeccccCCCCcEEEEeccCCCCcEEEEEEcC
Confidence            999999984 5555443321 122333444444443221 1 1222211  123456788875

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.17  E-value=1.2e-10  Score=113.43  Aligned_cols=115  Identities=18%  Similarity=0.173  Sum_probs=76.2

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhh
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQ  131 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~  131 (515)
                      .|++|||+||||||||+++|+.|+|.    |++|+|||++...               | .                 +.
T Consensus         3 ~M~~yDVvIIGaGpAGlsAA~~lar~----g~~v~lie~~~~g---------------g-~-----------------~~   45 (304)
T 4fk1_A            3 AMKYIDCAVIGAGPAGLNASLVLGRA----RKQIALFDNNTNR---------------N-R-----------------VT   45 (304)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHHHT----TCCEEEEECSCCG---------------G-G-----------------GS
T ss_pred             CCCCcCEEEECCCHHHHHHHHHHHHC----CCCEEEEeCCCCC---------------C-e-----------------ee
Confidence            45789999999999999999999996    9999999987522               1 0                 00


Q ss_pred             hhhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCC
Q 010200          132 QHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDS  211 (515)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~  211 (515)
                      . .+   .        +     +.     ..   -.+...++.....+.+.+.+.+.++. ..++.+..           
T Consensus        46 ~-~~---~--------~-----~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----------   88 (304)
T 4fk1_A           46 Q-NS---H--------G-----FI-----TR---DGIKPEEFKEIGLNEVMKYPSVHYYE-KTVVMITK-----------   88 (304)
T ss_dssp             S-CB---C--------C-----ST-----TC---TTBCHHHHHHHHHHHHTTSTTEEEEE-CCEEEEEE-----------
T ss_pred             e-ec---C--------C-----cc-----CC---CCCCHHHHHHHHHHHHHhcCCEEEEe-eEEEEeee-----------
Confidence            0 00   0        0     00     00   01334566677777777777555554 45666544           


Q ss_pred             CCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCc
Q 010200          212 TPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKS  248 (515)
Q Consensus       212 ~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S  248 (515)
                              ......++...+|+++.+|.||.|+|+..
T Consensus        89 --------~~~~~~~v~~~~g~~~~a~~liiATGs~p  117 (304)
T 4fk1_A           89 --------QSTGLFEIVTKDHTKYLAERVLLATGMQE  117 (304)
T ss_dssp             --------CTTSCEEEEETTCCEEEEEEEEECCCCEE
T ss_pred             --------cCCCcEEEEECCCCEEEeCEEEEccCCcc
Confidence                    12345678888999999999999999853

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.16  E-value=1e-10  Score=122.94  Aligned_cols=139  Identities=17%  Similarity=0.194  Sum_probs=91.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHh-cCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLA-SMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~-~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (515)
                      .++||+|||||++|+++|+.|+ +.    |++|+|||+.+.++.. |                   .....-|+...+..
T Consensus         7 ~~~dVvIIGaG~aGl~aA~~L~~~~----G~~v~viE~~~~~GGt-w-------------------~~~~ypg~~~d~~s   62 (540)
T 3gwf_A            7 HTVDAVVIGAGFGGIYAVHKLHHEL----GLTTVGFDKADGPGGT-W-------------------YWNRYPGALSDTES   62 (540)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTT----CCCEEEEESSSSSCTH-H-------------------HHCCCTTCEEEEEG
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcC----CCCEEEEECCCCCCCc-c-------------------cccCCCCceecCCc
Confidence            4689999999999999999999 75    8999999998866310 0                   00000000000000


Q ss_pred             hhccccceEEEEeCCCccceeeecc-cCCCCcceEEechHHHHHHHHHHHhcCCCc--eEEcCCeeEEEEeCCCCCCccc
Q 010200          133 HRHAYFDKMQVWDYTGLGYTKYNAR-DVNKEILGCVVENKVLHSSLLSCMQNTEFQ--KTIYPSRLTSMALLPSSSSISV  209 (515)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v--~i~~~~~v~~i~~~~~~~~~~~  209 (515)
                      ..+ .              ..+... ............+.++..+|.+.+++.+ +  +++++++|++++.         
T Consensus        63 ~~~-~--------------~~~~~~~~~~~~~~~~~~~~~ei~~~l~~~~~~~g-~~~~i~~~~~V~~i~~---------  117 (540)
T 3gwf_A           63 HLY-R--------------FSFDRDLLQESTWKTTYITQPEILEYLEDVVDRFD-LRRHFKFGTEVTSALY---------  117 (540)
T ss_dssp             GGS-S--------------CCSCHHHHHHCCCSBSEEEHHHHHHHHHHHHHHTT-CGGGEEESCCEEEEEE---------
T ss_pred             cee-e--------------eccccccccCCCCcccCCCHHHHHHHHHHHHHHcC-CcceeEeccEEEEEEE---------
Confidence            000 0              000000 0000011124678899999999998887 6  8999999999987         


Q ss_pred             CCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200          210 DSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       210 ~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                               +++...++|++++|+++.||+||.|+|.+|.-
T Consensus       118 ---------~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p  149 (540)
T 3gwf_A          118 ---------LDDENLWEVTTDHGEVYRAKYVVNAVGLLSAI  149 (540)
T ss_dssp             ---------ETTTTEEEEEETTSCEEEEEEEEECCCSCCSB
T ss_pred             ---------eCCCCEEEEEEcCCCEEEeCEEEECCcccccC
Confidence                     11335789999999999999999999987754

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.14  E-value=1.8e-10  Score=118.67  Aligned_cols=165  Identities=10%  Similarity=0.046  Sum_probs=89.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCc--EEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchh--
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQY--  129 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~--~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~--  129 (515)
                      ..+||+||||||+||++|+.|++.    |+  +|+|||+.+.++..... .....  ....+.... ..+..-.+...  
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~----G~~~~V~v~E~~~~~GG~~~~-~~~~~--~~~~ip~~~-~~~~~~~~~~g~~   76 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAE----KAFDQVTLFERRGSPGGVWNY-TSTLS--NKLPVPSTN-PILTTEPIVGPAA   76 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTT----TCCSEEEEECSSSSSSTTCSC-CSCCC--SCCCSSBCC-TTCCCCCBCCSSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHhc----CCCCCeEEEecCCCCCCeecC-CCCCC--ccccccccc-ccccccccccccc
Confidence            468999999999999999999996    88  99999998766421110 00000  000000000 00000000000  


Q ss_pred             hhhhhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCccc
Q 010200          130 VQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISV  209 (515)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~  209 (515)
                      +..........+.  .........+........ ......+..+.++|.+.+.+.+ ..++++++|++++.         
T Consensus        77 ~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~-~~i~~~t~V~~v~~---------  143 (447)
T 2gv8_A           77 LPVYPSPLYRDLQ--TNTPIELMGYCDQSFKPQ-TLQFPHRHTIQEYQRIYAQPLL-PFIKLATDVLDIEK---------  143 (447)
T ss_dssp             CCBCCCCCCTTCB--CSSCHHHHSCTTCCCCTT-CCSSCBHHHHHHHHHHHHGGGG-GGEECSEEEEEEEE---------
T ss_pred             cCCccCchhhhhc--cCCCHHHhccCCCCCCCC-CCCCCCHHHHHHHHHHHHHHhh-CeEEeCCEEEEEEe---------
Confidence            0000000000000  000000000000000000 1123568899999999988876 78999999999976         


Q ss_pred             CCCCCcccccccCCeeEEEcCC---Cc---EEEeeEEEEecCCCchh
Q 010200          210 DSTPSATTLFTKGHLAKLDLSD---GT---SLYAKLVVGADGGKSRV  250 (515)
Q Consensus       210 ~~~~~~~~~~~~~~~~~v~~~~---g~---~~~ad~vV~AdG~~S~v  250 (515)
                                 ..+.++|++.+   |+   ++.+|.||+|+|.+|.-
T Consensus       144 -----------~~~~~~V~~~~~~~G~~~~~~~~d~VVvAtG~~s~p  179 (447)
T 2gv8_A          144 -----------KDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVP  179 (447)
T ss_dssp             -----------ETTEEEEEEEESSTTCCEEEEEESEEEECCCSSSSB
T ss_pred             -----------CCCeEEEEEeecCCCCeeEEEEeCEEEECCCCCCCC
Confidence                       33456776655   66   79999999999998754

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.13  E-value=2.9e-10  Score=118.98  Aligned_cols=40  Identities=28%  Similarity=0.414  Sum_probs=36.3

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK   96 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~   96 (515)
                      +.++||||||||++||++|+.|++.    |++|+|+||.+.++.
T Consensus        39 ~~~~DVvVVGaG~AGl~AA~~aa~~----G~~V~vlEk~~~~GG   78 (510)
T 4at0_A           39 DYEADVVVAGYGIAGVAASIEAARA----GADVLVLERTSGWGG   78 (510)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSSCT
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHC----CCcEEEEeCCCCCCC
Confidence            4679999999999999999999996    999999999987753

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=99.13  E-value=1.7e-10  Score=114.83  Aligned_cols=52  Identities=15%  Similarity=0.098  Sum_probs=42.8

Q ss_pred             eEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEec
Q 010200          165 GCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGAD  244 (515)
Q Consensus       165 ~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~Ad  244 (515)
                      +..++...+...|.+.+++.| ++|+. ++|++++.                    ..           .+.||.||.|+
T Consensus       136 ~~~v~p~~~~~~l~~~~~~~G-v~i~~-~~V~~i~~--------------------~~-----------~~~a~~VV~A~  182 (351)
T 3g3e_A          136 SLILEGKNYLQWLTERLTERG-VKFFQ-RKVESFEE--------------------VA-----------REGADVIVNCT  182 (351)
T ss_dssp             EEEECHHHHHHHHHHHHHHTT-CEEEE-CCCCCHHH--------------------HH-----------HTTCSEEEECC
T ss_pred             ceEEcHHHHHHHHHHHHHHCC-CEEEE-EEeCCHHH--------------------hh-----------cCCCCEEEECC
Confidence            356889999999999999998 89988 88888753                    10           15699999999


Q ss_pred             CCCch
Q 010200          245 GGKSR  249 (515)
Q Consensus       245 G~~S~  249 (515)
                      |.+|.
T Consensus       183 G~~s~  187 (351)
T 3g3e_A          183 GVWAG  187 (351)
T ss_dssp             GGGGG
T ss_pred             CcChH
Confidence            99985

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=99.13  E-value=1.3e-10  Score=113.56  Aligned_cols=115  Identities=17%  Similarity=0.216  Sum_probs=83.5

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      +||+||||||+|+++|+.|++.    |+ +|+|||+.. ++ ..|             ..                 .. 
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~----g~~~v~lie~~~-~g-g~~-------------~~-----------------~~-   44 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRG----GVKNAVLFEKGM-PG-GQI-------------TG-----------------SS-   44 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT----TCSSEEEECSSS-TT-CGG-------------GG-----------------CS-
T ss_pred             ceEEEECccHHHHHHHHHHHHC----CCCcEEEEcCCC-CC-ccc-------------cc-----------------cc-
Confidence            7999999999999999999996    89 999999953 21 000             00                 00 


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                        ...             .++  .     ....+++..+...|.+.+.+.+ ++++. ++|+++..              
T Consensus        45 --~~~-------------~~~--~-----~~~~~~~~~~~~~l~~~~~~~~-v~~~~-~~v~~i~~--------------   86 (311)
T 2q0l_A           45 --EIE-------------NYP--G-----VKEVVSGLDFMQPWQEQCFRFG-LKHEM-TAVQRVSK--------------   86 (311)
T ss_dssp             --CBC-------------CST--T-----CCSCBCHHHHHHHHHHHHHTTS-CEEEC-SCEEEEEE--------------
T ss_pred             --ccc-------------cCC--C-----CcccCCHHHHHHHHHHHHHHcC-CEEEE-EEEEEEEE--------------
Confidence              000             000  0     0013567888999999998887 89988 79999976              


Q ss_pred             cccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhh
Q 010200          215 ATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVR  251 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr  251 (515)
                            ....+++.+.+|.++.+|.||+|+|.++.+.
T Consensus        87 ------~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~  117 (311)
T 2q0l_A           87 ------KDSHFVILAEDGKTFEAKSVIIATGGSPKRT  117 (311)
T ss_dssp             ------ETTEEEEEETTSCEEEEEEEEECCCEEECCC
T ss_pred             ------cCCEEEEEEcCCCEEECCEEEECCCCCCCCC
Confidence                  3345777778888999999999999877654

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.12  E-value=1.6e-10  Score=121.84  Aligned_cols=142  Identities=17%  Similarity=0.189  Sum_probs=88.9

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhh
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (515)
                      +.++||+|||||++|+++|+.|++.    |++|+|||+.+.++.. |... ..+                  ++.-....
T Consensus        14 ~~~~dVvIIGaG~aGl~aA~~L~~~----G~~v~iiE~~~~~GG~-w~~~-~~p------------------g~~~d~~~   69 (542)
T 1w4x_A           14 PEEVDVLVVGAGFSGLYALYRLREL----GRSVHVIETAGDVGGV-WYWN-RYP------------------GARCDIES   69 (542)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSSCTH-HHHC-CCT------------------TCBCSSCT
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhC----CCCEEEEeCCCCCCCc-cccc-CCC------------------ceeecccc
Confidence            3468999999999999999999996    8999999999876310 0000 000                  00000000


Q ss_pred             hhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCC-CceEEcCCeeEEEEeCCCCCCcccCC
Q 010200          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTE-FQKTIYPSRLTSMALLPSSSSISVDS  211 (515)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g-~v~i~~~~~v~~i~~~~~~~~~~~~~  211 (515)
                      ..+    ...+   .......+.       .......+.++.++|.+.+++.+ ..+++++++|++++.           
T Consensus        70 ~~~----~~~f---~~~~~~~~~-------~~~~~~~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~-----------  124 (542)
T 1w4x_A           70 IEY----CYSF---SEEVLQEWN-------WTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAF-----------  124 (542)
T ss_dssp             TTS----SCCS---CHHHHHHCC-------CCBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEE-----------
T ss_pred             ccc----cccc---ChhhhhccC-------cccccCCHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEE-----------
Confidence            000    0000   000000000       00012457788888888777664 267999999999986           


Q ss_pred             CCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200          212 TPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       212 ~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                             +++...++|++++|+++.||+||+|+|.+|.-
T Consensus       125 -------~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p  156 (542)
T 1w4x_A          125 -------DEATNTWTVDTNHGDRIRARYLIMASGQLSVP  156 (542)
T ss_dssp             -------ETTTTEEEEEETTCCEEEEEEEEECCCSCCCC
T ss_pred             -------cCCCCeEEEEECCCCEEEeCEEEECcCCCCCC
Confidence                   11235688888899899999999999998754

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.12  E-value=5.7e-10  Score=114.22  Aligned_cols=36  Identities=36%  Similarity=0.646  Sum_probs=33.6

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      +||||||||++|+++|+.|++.    |++|+|||+++.++
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~----G~~V~vlE~~~~~G   37 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNA----GKKVLLLEGGERLG   37 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHT----TCCEEEECSSSSSB
T ss_pred             CCEEEECCcHHHHHHHHHHHHc----CCeEEEEecCCCcc
Confidence            7999999999999999999996    99999999987764

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=99.12  E-value=8.8e-11  Score=115.84  Aligned_cols=120  Identities=14%  Similarity=0.104  Sum_probs=82.1

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      ..+||+||||||+|+++|+.|++.    |++|+|||+......        ...+.                    +.. 
T Consensus         7 ~~~~vvIIG~G~aGl~~A~~l~~~----g~~v~lie~~~~~~~--------~~gg~--------------------~~~-   53 (333)
T 1vdc_A            7 HNTRLCIVGSGPAAHTAAIYAARA----ELKPLLFEGWMANDI--------APGGQ--------------------LTT-   53 (333)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT----TCCCEEECCSSBTTB--------CTTCG--------------------GGG-
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC----CCeEEEEeccCcccc--------CCCce--------------------eee-
Confidence            458999999999999999999996    999999998211100        00000                    000 


Q ss_pred             hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (515)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~  213 (515)
                          ...+  ..        ++  .   ..  ..+.+..+...|.+.+.+.+ ++++.++ |+++..             
T Consensus        54 ----~~~~--~~--------~~--~---~~--~~~~~~~~~~~l~~~~~~~g-v~~~~~~-v~~i~~-------------   97 (333)
T 1vdc_A           54 ----TTDV--EN--------FP--G---FP--EGILGVELTDKFRKQSERFG-TTIFTET-VTKVDF-------------   97 (333)
T ss_dssp             ----CSEE--CC--------ST--T---CT--TCEEHHHHHHHHHHHHHHTT-CEEECCC-CCEEEC-------------
T ss_pred             ----cccc--cc--------CC--C---Cc--cCCCHHHHHHHHHHHHHHCC-CEEEEeE-EEEEEE-------------
Confidence                0000  00        00  0   00  12567788899999888887 9999986 888865             


Q ss_pred             CcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200          214 SATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                             ....+++.+ +|.++.+|.||+|+|.++..
T Consensus        98 -------~~~~~~v~~-~~~~~~~~~vv~A~G~~~~~  126 (333)
T 1vdc_A           98 -------SSKPFKLFT-DSKAILADAVILAIGAVAKR  126 (333)
T ss_dssp             -------SSSSEEEEC-SSEEEEEEEEEECCCEEECC
T ss_pred             -------cCCEEEEEE-CCcEEEcCEEEECCCCCcCC
Confidence                   334577777 77789999999999998654

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=99.11  E-value=2.2e-10  Score=112.71  Aligned_cols=119  Identities=18%  Similarity=0.245  Sum_probs=81.8

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhh
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (515)
                      ...+||+||||||+|+++|+.|++.    |++|+|||+. .++. .|              .                 .
T Consensus         6 ~~~~dvvIIG~G~aGl~aA~~l~~~----g~~v~lie~~-~~gg-~~--------------~-----------------~   48 (325)
T 2q7v_A            6 AHDYDVVIIGGGPAGLTAAIYTGRA----QLSTLILEKG-MPGG-QI--------------A-----------------W   48 (325)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHT----TCCEEEEESS-CTTG-GG--------------G-----------------G
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHc----CCcEEEEeCC-CCCc-cc--------------c-----------------c
Confidence            3468999999999999999999996    8999999998 3310 00              0                 0


Q ss_pred             hhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCC
Q 010200          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (515)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~  212 (515)
                      . . ...             .++  ...     ..+.+..+...|.+.+++.+ ++++. .+|+++..         +. 
T Consensus        49 ~-~-~~~-------------~~~--~~~-----~~~~~~~~~~~l~~~~~~~g-v~~~~-~~v~~i~~---------~~-   94 (325)
T 2q7v_A           49 S-E-EVE-------------NFP--GFP-----EPIAGMELAQRMHQQAEKFG-AKVEM-DEVQGVQH---------DA-   94 (325)
T ss_dssp             C-S-CBC-------------CST--TCS-----SCBCHHHHHHHHHHHHHHTT-CEEEE-CCEEEEEE---------CT-
T ss_pred             c-c-ccc-------------cCC--CCC-----CCCCHHHHHHHHHHHHHHcC-CEEEe-eeEEEEEe---------cc-
Confidence            0 0 000             000  000     12456788888998888887 89887 58998876         00 


Q ss_pred             CCcccccccCC-eeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200          213 PSATTLFTKGH-LAKLDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       213 ~~~~~~~~~~~-~~~v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                              .+. .+++...+|.++.+|.||.|+|.++..
T Consensus        95 --------~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~  125 (325)
T 2q7v_A           95 --------TSHPYPFTVRGYNGEYRAKAVILATGADPRK  125 (325)
T ss_dssp             --------TSSSCCEEEEESSCEEEEEEEEECCCEEECC
T ss_pred             --------CCCceEEEEECCCCEEEeCEEEECcCCCcCC
Confidence                    012 266666788889999999999986543

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.11  E-value=1.9e-10  Score=113.56  Aligned_cols=123  Identities=13%  Similarity=0.115  Sum_probs=84.3

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhh
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQ  131 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~  131 (515)
                      ..+.+||+|||||++||++|+.|++.    |++|+|||+.+....        ...  |               .+.   
T Consensus        19 ~~~~~~vvIIG~G~aGl~aA~~l~~~----g~~v~vie~~~~~~~--------~~g--g---------------~~~---   66 (338)
T 3itj_A           19 SHVHNKVTIIGSGPAAHTAAIYLARA----EIKPILYEGMMANGI--------AAG--G---------------QLT---   66 (338)
T ss_dssp             --CEEEEEEECCSHHHHHHHHHHHHT----TCCCEEECCSSBTTB--------CTT--C---------------GGG---
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHHHC----CCCEEEEecCCCCCC--------CcC--c---------------ccc---
Confidence            34568999999999999999999996    999999999762100        000  0               000   


Q ss_pred             hhhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCC
Q 010200          132 QHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDS  211 (515)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~  211 (515)
                      .     ...  +.        .++     ..  ...+.+..+...|.+.+.+.+ +++++++ |+++..           
T Consensus        67 ~-----~~~--~~--------~~~-----~~--~~~~~~~~~~~~~~~~~~~~g-v~i~~~~-v~~i~~-----------  111 (338)
T 3itj_A           67 T-----TTE--IE--------NFP-----GF--PDGLTGSELMDRMREQSTKFG-TEIITET-VSKVDL-----------  111 (338)
T ss_dssp             G-----SSE--EC--------CST-----TC--TTCEEHHHHHHHHHHHHHHTT-CEEECSC-EEEEEC-----------
T ss_pred             c-----chh--hc--------ccC-----CC--cccCCHHHHHHHHHHHHHHcC-CEEEEeE-EEEEEE-----------
Confidence            0     000  00        000     00  012567889999999999987 9999997 999875           


Q ss_pred             CCCcccccccCCeeEEEc---CCCcEEEeeEEEEecCCCchh
Q 010200          212 TPSATTLFTKGHLAKLDL---SDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       212 ~~~~~~~~~~~~~~~v~~---~~g~~~~ad~vV~AdG~~S~v  250 (515)
                               ....+.+.+   .++.++.+|.||.|+|..+..
T Consensus       112 ---------~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~~  144 (338)
T 3itj_A          112 ---------SSKPFKLWTEFNEDAEPVTTDAIILATGASAKR  144 (338)
T ss_dssp             ---------SSSSEEEEETTCSSSCCEEEEEEEECCCEEECC
T ss_pred             ---------cCCEEEEEEEecCCCcEEEeCEEEECcCCCcCC
Confidence                     345577776   366789999999999996543

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.11  E-value=9e-11  Score=123.61  Aligned_cols=140  Identities=19%  Similarity=0.226  Sum_probs=90.1

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhh
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (515)
                      ...+||+|||||++|+++|+.|++.    |++|+|||+.+.++.. |                   ..-..-|+..++..
T Consensus        19 ~~~~dVvIIGaG~aGl~aA~~L~~~----G~~v~iiE~~~~~GGt-w-------------------~~~~ypg~~~dv~s   74 (549)
T 4ap3_A           19 TTSYDVVVVGAGIAGLYAIHRFRSQ----GLTVRAFEAASGVGGV-W-------------------YWNRYPGARCDVES   74 (549)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSSCTH-H-------------------HHCCCTTCBCSSCT
T ss_pred             CCCCCEEEECchHHHHHHHHHHHhC----CCCEEEEeCCCCCCCc-c-------------------ccCCCCCceeCCCc
Confidence            3568999999999999999999996    8999999998866310 0                   00000011000000


Q ss_pred             hhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCc--eEEcCCeeEEEEeCCCCCCcccC
Q 010200          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQ--KTIYPSRLTSMALLPSSSSISVD  210 (515)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v--~i~~~~~v~~i~~~~~~~~~~~~  210 (515)
                      ..+ ...      ...  .. ..    ..........+.++..+|.+.+++.+ +  +++++++|+++..          
T Consensus        75 ~~y-~~~------f~~--~~-~~----~~~~~~~~~~~~ei~~yl~~~~~~~g-~~~~i~~~~~V~~i~~----------  129 (549)
T 4ap3_A           75 IDY-SYS------FSP--EL-EQ----EWNWSEKYATQPEILAYLEHVADRFD-LRRDIRFDTRVTSAVL----------  129 (549)
T ss_dssp             TTS-SCC------SCH--HH-HH----HCCCSSSSCBHHHHHHHHHHHHHHTT-CGGGEECSCCEEEEEE----------
T ss_pred             hhc-ccc------ccc--cc-cc----CCCCccCCCCHHHHHHHHHHHHHHcC-CCccEEECCEEEEEEE----------
Confidence            000 000      000  00 00    00000123567889999999998887 5  8999999999987          


Q ss_pred             CCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200          211 STPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR  249 (515)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~  249 (515)
                              ++....++|++++|+++.||+||.|+|..|.
T Consensus       130 --------~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~  160 (549)
T 4ap3_A          130 --------DEEGLRWTVRTDRGDEVSARFLVVAAGPLSN  160 (549)
T ss_dssp             --------ETTTTEEEEEETTCCEEEEEEEEECCCSEEE
T ss_pred             --------cCCCCEEEEEECCCCEEEeCEEEECcCCCCC
Confidence                    1233578999999999999999999997664

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=99.10  E-value=3.5e-10  Score=109.35  Aligned_cols=114  Identities=13%  Similarity=0.138  Sum_probs=83.6

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      .+||+||||||+|+++|+.|++.    |++|+|||+......                                      
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~----g~~v~lie~~~~~~~--------------------------------------   39 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRA----RKNILLVDAGERRNR--------------------------------------   39 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT----TCCEEEEECCCCGGG--------------------------------------
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC----CCCEEEEeCCCcccc--------------------------------------
Confidence            38999999999999999999996    899999998763310                                      


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                      ....         .   ..++     ..   .......+...+.+.+.+.++++++. .+|+++..              
T Consensus        40 ~~~~---------~---~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~--------------   84 (297)
T 3fbs_A           40 FASH---------S---HGFL-----GQ---DGKAPGEIIAEARRQIERYPTIHWVE-GRVTDAKG--------------   84 (297)
T ss_dssp             GCSC---------C---CSST-----TC---TTCCHHHHHHHHHHHHTTCTTEEEEE-SCEEEEEE--------------
T ss_pred             cchh---------h---cCCc-----CC---CCCCHHHHHHHHHHHHHhcCCeEEEE-eEEEEEEE--------------
Confidence            0000         0   0000     00   02446788889999998875577765 49999976              


Q ss_pred             cccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhh
Q 010200          215 ATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVR  251 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr  251 (515)
                            ....+.+.+.+|+++.+|.||.|+|..+...
T Consensus        85 ------~~~~~~v~~~~g~~~~~d~vviAtG~~~~~~  115 (297)
T 3fbs_A           85 ------SFGEFIVEIDGGRRETAGRLILAMGVTDELP  115 (297)
T ss_dssp             ------ETTEEEEEETTSCEEEEEEEEECCCCEEECC
T ss_pred             ------cCCeEEEEECCCCEEEcCEEEECCCCCCCCC
Confidence                  3356888888998999999999999976543

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.10  E-value=5.7e-10  Score=109.22  Aligned_cols=113  Identities=19%  Similarity=0.186  Sum_probs=83.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      +.+||+|||||++|+++|+.|++.    |++|+|||+.  ++.. +              ..                  
T Consensus        14 ~~~~vvIIG~G~aGl~aA~~l~~~----g~~v~lie~~--~gg~-~--------------~~------------------   54 (323)
T 3f8d_A           14 EKFDVIIVGLGPAAYGAALYSARY----MLKTLVIGET--PGGQ-L--------------TE------------------   54 (323)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT----TCCEEEEESS--TTGG-G--------------GG------------------
T ss_pred             CccCEEEECccHHHHHHHHHHHHC----CCcEEEEecc--CCCe-e--------------cc------------------
Confidence            358999999999999999999996    8999999998  3100 0              00                  


Q ss_pred             hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (515)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~  213 (515)
                       .   .  ..+        .++     ...   .+....+...|.+.+.+.+ +++++ ++|+++..             
T Consensus        55 -~---~--~~~--------~~~-----~~~---~~~~~~~~~~~~~~~~~~~-v~~~~-~~v~~i~~-------------   97 (323)
T 3f8d_A           55 -A---G--IVD--------DYL-----GLI---EIQASDMIKVFNKHIEKYE-VPVLL-DIVEKIEN-------------   97 (323)
T ss_dssp             -C---C--EEC--------CST-----TST---TEEHHHHHHHHHHHHHTTT-CCEEE-SCEEEEEE-------------
T ss_pred             -c---c--ccc--------ccC-----CCC---CCCHHHHHHHHHHHHHHcC-CEEEE-EEEEEEEe-------------
Confidence             0   0  000        000     000   1556788899999999887 89998 89999976             


Q ss_pred             CcccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200          214 SATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR  249 (515)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~  249 (515)
                             ....+.+..++|.++.+|.||.|+|....
T Consensus        98 -------~~~~~~v~~~~g~~~~~d~lvlAtG~~~~  126 (323)
T 3f8d_A           98 -------RGDEFVVKTKRKGEFKADSVILGIGVKRR  126 (323)
T ss_dssp             -------C--CEEEEESSSCEEEEEEEEECCCCEEC
T ss_pred             -------cCCEEEEEECCCCEEEcCEEEECcCCCCc
Confidence                   34567888888889999999999999843

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=99.10  E-value=4.4e-10  Score=119.20  Aligned_cols=68  Identities=18%  Similarity=0.021  Sum_probs=49.8

Q ss_pred             chHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCc--EEEeeEEEEecCC
Q 010200          169 ENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT--SLYAKLVVGADGG  246 (515)
Q Consensus       169 ~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~--~~~ad~vV~AdG~  246 (515)
                      ....+...|.+.+++.| ++|+++++|+++..+           +++     ...++.+...+|+  ++.+|.||+|+|.
T Consensus       253 ~g~~l~~~L~~~~~~~g-v~i~~~t~v~~l~~~-----------~~g-----~v~GV~~~~~~G~~~~i~A~~VVlAtGg  315 (572)
T 1d4d_A          253 VGAHVAQVLWDNAVKRG-TDIRLNSRVVRILED-----------ASG-----KVTGVLVKGEYTGYYVIKADAVVIAAGG  315 (572)
T ss_dssp             HHHHHHHHHHHHHHHTT-CEEESSEEEEEEEEC-------------C-----CEEEEEEEETTTEEEEEECSEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHcC-CeEEecCEEEEEEEC-----------CCC-----eEEEEEEEeCCCcEEEEEcCEEEEeCCC
Confidence            35688999999999988 999999999999761           000     1113444433664  6899999999999


Q ss_pred             Cchhhhh
Q 010200          247 KSRVREL  253 (515)
Q Consensus       247 ~S~vr~~  253 (515)
                      +|..++.
T Consensus       316 ~~~~~~~  322 (572)
T 1d4d_A          316 FAKNNER  322 (572)
T ss_dssp             CTTCHHH
T ss_pred             CccCHHH
Confidence            9976443

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.08  E-value=2.5e-10  Score=120.14  Aligned_cols=141  Identities=13%  Similarity=0.156  Sum_probs=90.1

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhh
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (515)
                      +..+||+|||||++|+++|+.|++.    |++|+|||+.+.++.. |.. ...+ +.  .           +.....+..
T Consensus         7 ~~~~dVvIIGaG~aGl~aA~~L~~~----g~~v~iiE~~~~~GGt-w~~-~~yP-g~--~-----------~d~~~~~y~   66 (545)
T 3uox_A            7 SPALDAVVIGAGVTGIYQAFLINQA----GMKVLGIEAGEDVGGT-WYW-NRYP-GC--R-----------LDTESYAYG   66 (545)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSSCTH-HHH-CCCT-TC--B-----------CSSCHHHHC
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhC----CCCEEEEeCCCCCCCc-ccc-CCCC-ce--e-----------ecCchhhcc
Confidence            3468999999999999999999996    8999999999876311 000 0000 00  0           000000000


Q ss_pred             hhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCc--eEEcCCeeEEEEeCCCCCCcccC
Q 010200          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQ--KTIYPSRLTSMALLPSSSSISVD  210 (515)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v--~i~~~~~v~~i~~~~~~~~~~~~  210 (515)
                      ...         ......         ..........+.++..+|.+.+++.+ +  .++++++|++++.          
T Consensus        67 ~~f---------~~~~~~---------~~~~~~~~~~~~ei~~yl~~~~~~~~-l~~~i~~~~~V~~~~~----------  117 (545)
T 3uox_A           67 YFA---------LKGIIP---------EWEWSENFASQPEMLRYVNRAADAMD-VRKHYRFNTRVTAARY----------  117 (545)
T ss_dssp             HHH---------HTTSST---------TCCCSBSSCBHHHHHHHHHHHHHHHT-CGGGEECSCCEEEEEE----------
T ss_pred             ccc---------Cccccc---------CCCccccCCCHHHHHHHHHHHHHHcC-CcCcEEECCEEEEEEE----------
Confidence            000         000000         00001123567888888888888776 5  7999999999986          


Q ss_pred             CCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200          211 STPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                              ++....++|++++|+++.||+||.|+|..|.-
T Consensus       118 --------~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p  149 (545)
T 3uox_A          118 --------VENDRLWEVTLDNEEVVTCRFLISATGPLSAS  149 (545)
T ss_dssp             --------EGGGTEEEEEETTTEEEEEEEEEECCCSCBC-
T ss_pred             --------eCCCCEEEEEECCCCEEEeCEEEECcCCCCCC
Confidence                    12345789999999899999999999987653

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=99.07  E-value=3.2e-10  Score=125.73  Aligned_cols=69  Identities=14%  Similarity=0.146  Sum_probs=55.0

Q ss_pred             EEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCe-eEEEcCCCcEEEeeEEEEec
Q 010200          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL-AKLDLSDGTSLYAKLVVGAD  244 (515)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~g~~~~ad~vV~Ad  244 (515)
                      ..++...+...|.+.+++.| ++|+.+++|++++.                    .++. +.|.+.+| ++.||.||.|+
T Consensus       146 g~v~p~~l~~~L~~~a~~~G-v~i~~~t~V~~i~~--------------------~~~~v~~V~t~~G-~i~Ad~VV~Aa  203 (830)
T 1pj5_A          146 GLASAARAVQLLIKRTESAG-VTYRGSTTVTGIEQ--------------------SGGRVTGVQTADG-VIPADIVVSCA  203 (830)
T ss_dssp             EEECHHHHHHHHHHHHHHTT-CEEECSCCEEEEEE--------------------ETTEEEEEEETTE-EEECSEEEECC
T ss_pred             ceEcHHHHHHHHHHHHHHcC-CEEECCceEEEEEE--------------------eCCEEEEEEECCc-EEECCEEEECC
Confidence            45688899999999999998 99999999999976                    2233 35777777 79999999999


Q ss_pred             CCCchh-hhhcCC
Q 010200          245 GGKSRV-RELAGF  256 (515)
Q Consensus       245 G~~S~v-r~~l~~  256 (515)
                      |.+|.. .+.++.
T Consensus       204 G~~s~~l~~~~g~  216 (830)
T 1pj5_A          204 GFWGAKIGAMIGM  216 (830)
T ss_dssp             GGGHHHHHHTTTC
T ss_pred             ccchHHHHHHhCC
Confidence            999964 333443

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.06  E-value=4.3e-10  Score=110.63  Aligned_cols=118  Identities=26%  Similarity=0.299  Sum_probs=85.9

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      .+||+|||||++|+++|+.|++.    |++|+|||+.+.++              |      .+.         .    .
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~----g~~v~lie~~~~~g--------------G------~~~---------~----~   49 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMR----QASVKIIESLPQLG--------------G------QLS---------A----L   49 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSSC--------------H------HHH---------H----H
T ss_pred             cceEEEECCCHHHHHHHHHHHHC----CCCEEEEEcCCCCC--------------c------eeh---------h----c
Confidence            48999999999999999999996    99999999998651              0      000         0    0


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                      . +...  +++..+             .   ..+.+..+...|.+.+.+.+ ++++++++|+++..              
T Consensus        50 ~-~~~~--~~~~~~-------------~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~i~~--------------   95 (332)
T 3lzw_A           50 Y-PEKY--IYDVAG-------------F---PKIRAQELINNLKEQMAKFD-QTICLEQAVESVEK--------------   95 (332)
T ss_dssp             C-TTSE--ECCSTT-------------C---SSEEHHHHHHHHHHHHTTSC-CEEECSCCEEEEEE--------------
T ss_pred             C-CCce--EeccCC-------------C---CCCCHHHHHHHHHHHHHHhC-CcEEccCEEEEEEE--------------
Confidence            0 0000  000000             0   01457889999999999887 99999999999976              


Q ss_pred             cccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200          215 ATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR  249 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~  249 (515)
                           +....+.+.+.+|+ +.+|.||.|+|.++.
T Consensus        96 -----~~~~~~~v~~~~g~-~~~d~vVlAtG~~~~  124 (332)
T 3lzw_A           96 -----QADGVFKLVTNEET-HYSKTVIITAGNGAF  124 (332)
T ss_dssp             -----CTTSCEEEEESSEE-EEEEEEEECCTTSCC
T ss_pred             -----CCCCcEEEEECCCE-EEeCEEEECCCCCcC
Confidence                 11236788888886 999999999999654

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=99.05  E-value=7.1e-10  Score=108.66  Aligned_cols=116  Identities=19%  Similarity=0.220  Sum_probs=80.4

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhh
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQ  131 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~  131 (515)
                      +...+||+||||||+|+++|+.|++.    |++|+|||+.. ++. .+              .           .     
T Consensus        13 m~~~~dvvIIG~G~aGl~aA~~l~~~----g~~v~lie~~~-~gg-~~--------------~-----------~-----   56 (319)
T 3cty_A           13 KERDFDVVIVGAGAAGFSAAVYAARS----GFSVAILDKAV-AGG-LT--------------A-----------E-----   56 (319)
T ss_dssp             -CCEEEEEEECCSHHHHHHHHHHHHT----TCCEEEEESSS-TTG-GG--------------G-----------G-----
T ss_pred             ccCCCcEEEECcCHHHHHHHHHHHhC----CCcEEEEeCCC-CCc-cc--------------c-----------c-----
Confidence            44568999999999999999999996    89999999943 210 00              0           0     


Q ss_pred             hhhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCC
Q 010200          132 QHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDS  211 (515)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~  211 (515)
                      .  . ...             .++  ..      ..+.+..+...+.+.+.+.+ +++++ .+|+++..           
T Consensus        57 ~--~-~~~-------------~~~--~~------~~~~~~~~~~~~~~~~~~~~-v~~~~-~~v~~i~~-----------   99 (319)
T 3cty_A           57 A--P-LVE-------------NYL--GF------KSIVGSELAKLFADHAANYA-KIREG-VEVRSIKK-----------   99 (319)
T ss_dssp             C--S-CBC-------------CBT--TB------SSBCHHHHHHHHHHHHHTTS-EEEET-CCEEEEEE-----------
T ss_pred             c--c-hhh-------------hcC--CC------cccCHHHHHHHHHHHHHHcC-CEEEE-eeEEEEEE-----------
Confidence            0  0 000             000  00      02455678888888888887 89988 68999875           


Q ss_pred             CCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200          212 TPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       212 ~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                               ....+++.. ++.++.+|.||+|+|.++..
T Consensus       100 ---------~~~~~~v~~-~~~~~~~~~li~AtG~~~~~  128 (319)
T 3cty_A          100 ---------TQGGFDIET-NDDTYHAKYVIITTGTTHKH  128 (319)
T ss_dssp             ---------ETTEEEEEE-SSSEEEEEEEEECCCEEECC
T ss_pred             ---------eCCEEEEEE-CCCEEEeCEEEECCCCCccc
Confidence                     334466666 56689999999999986543

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=99.05  E-value=6.3e-10  Score=111.31  Aligned_cols=141  Identities=16%  Similarity=0.257  Sum_probs=84.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (515)
                      +++||+|||||++|+++|+.|++.    |+ +|+|||+.+ ++. .|...  ....  ..+.+             ....
T Consensus         3 ~~~~vvIIGaG~aGl~aA~~l~~~----g~~~v~lie~~~-~Gg-~~~~~--~~~~--~~~~~-------------~~~~   59 (369)
T 3d1c_A            3 QHHKVAIIGAGAAGIGMAITLKDF----GITDVIILEKGT-VGH-SFKHW--PKST--RTITP-------------SFTS   59 (369)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT----TCCCEEEECSSS-TTH-HHHTS--CTTC--BCSSC-------------CCCC
T ss_pred             ccCcEEEECcCHHHHHHHHHHHHc----CCCcEEEEecCC-CCC-ccccC--cccc--cccCc-------------chhc
Confidence            358999999999999999999996    88 999999987 421 00000  0000  00000             0000


Q ss_pred             hhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCC
Q 010200          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (515)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~  212 (515)
                      ... .+.     +.........+.  .  ......+.+..+..+|.+.+++.| ++++++++|+++..            
T Consensus        60 ~~~-g~~-----~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~l~~~~~~~g-v~i~~~~~v~~i~~------------  116 (369)
T 3d1c_A           60 NGF-GMP-----DMNAISMDTSPA--F--TFNEEHISGETYAEYLQVVANHYE-LNIFENTVVTNISA------------  116 (369)
T ss_dssp             GGG-TCC-----CTTCSSTTCCHH--H--HHCCSSCBHHHHHHHHHHHHHHTT-CEEECSCCEEEEEE------------
T ss_pred             ccC-Cch-----hhhhcccccccc--c--cccccCCCHHHHHHHHHHHHHHcC-CeEEeCCEEEEEEE------------
Confidence            000 000     000000000000  0  000012456778888888888887 99999999999976            


Q ss_pred             CCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200          213 PSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR  249 (515)
Q Consensus       213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~  249 (515)
                              .++.+.|...++ ++.+|.||.|+|.++.
T Consensus       117 --------~~~~~~v~~~~g-~~~~d~vVlAtG~~~~  144 (369)
T 3d1c_A          117 --------DDAYYTIATTTE-TYHADYIFVATGDYNF  144 (369)
T ss_dssp             --------CSSSEEEEESSC-CEEEEEEEECCCSTTS
T ss_pred             --------CCCeEEEEeCCC-EEEeCEEEECCCCCCc
Confidence                    234577777777 5999999999999864

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=99.05  E-value=5.4e-10  Score=110.37  Aligned_cols=117  Identities=19%  Similarity=0.207  Sum_probs=81.0

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhh
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQ  131 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~  131 (515)
                      ++..+||+||||||+|+++|+.|++.    |++|+|||+.. ++              +. +                 .
T Consensus        11 ~~~~~~vvIIG~G~aGl~aA~~l~~~----g~~v~lie~~~-~g--------------g~-~-----------------~   53 (335)
T 2a87_A           11 HHPVRDVIVIGSGPAGYTAALYAARA----QLAPLVFEGTS-FG--------------GA-L-----------------M   53 (335)
T ss_dssp             CCCCEEEEEECCHHHHHHHHHHHHHT----TCCCEEECCSS-CS--------------CG-G-----------------G
T ss_pred             cCCcCCEEEECCCHHHHHHHHHHHhC----CCeEEEEecCC-CC--------------Cc-e-----------------e
Confidence            34568999999999999999999996    99999999752 21              00 0                 0


Q ss_pred             hhhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCC
Q 010200          132 QHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDS  211 (515)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~  211 (515)
                      . .. ...             .++  .     ....+.+..+...|.+.+.+.+ ++++.++ |+++..           
T Consensus        54 ~-~~-~~~-------------~~~--~-----~~~~~~~~~~~~~l~~~~~~~~-v~~~~~~-v~~i~~-----------   98 (335)
T 2a87_A           54 T-TT-DVE-------------NYP--G-----FRNGITGPELMDEMREQALRFG-ADLRMED-VESVSL-----------   98 (335)
T ss_dssp             S-CS-CBC-------------CST--T-----CTTCBCHHHHHHHHHHHHHHTT-CEEECCC-EEEEEC-----------
T ss_pred             c-cc-hhh-------------hcC--C-----CCCCCCHHHHHHHHHHHHHHcC-CEEEEee-EEEEEe-----------
Confidence            0 00 000             000  0     0012456788888888888887 9999986 888753           


Q ss_pred             CCCcccccccCCeeEE-EcCCCcEEEeeEEEEecCCCchh
Q 010200          212 TPSATTLFTKGHLAKL-DLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       212 ~~~~~~~~~~~~~~~v-~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                                ...+++ .+++|+++.+|.||+|+|.++..
T Consensus        99 ----------~~~~~v~~~~~g~~~~~d~lviAtG~~~~~  128 (335)
T 2a87_A           99 ----------HGPLKSVVTADGQTHRARAVILAMGAAARY  128 (335)
T ss_dssp             ----------SSSSEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             ----------CCcEEEEEeCCCCEEEeCEEEECCCCCccC
Confidence                      133566 67788889999999999987643

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=99.04  E-value=8.4e-10  Score=117.43  Aligned_cols=66  Identities=20%  Similarity=0.186  Sum_probs=51.2

Q ss_pred             hHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCC--eeEEE-cCCCc--EEEeeEEEEec
Q 010200          170 NKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGH--LAKLD-LSDGT--SLYAKLVVGAD  244 (515)
Q Consensus       170 r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~-~~~g~--~~~ad~vV~Ad  244 (515)
                      ...+...|.+.+.+.|+++|+++++|+++..                   +++.  ++.+. ..+|+  ++.++.||+|+
T Consensus       133 g~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~-------------------~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAt  193 (602)
T 1kf6_A          133 GFHMLHTLFQTSLQFPQIQRFDEHFVLDILV-------------------DDGHVRGLVAMNMMEGTLVQIRANAVVMAT  193 (602)
T ss_dssp             HHHHHHHHHHHHTTCTTEEEEETEEEEEEEE-------------------ETTEEEEEEEEETTTTEEEEEECSCEEECC
T ss_pred             HHHHHHHHHHHHHhCCCcEEEeCCEEEEEEE-------------------eCCEEEEEEEEEcCCCcEEEEEcCeEEECC
Confidence            3578899999998887799999999999976                   1111  23332 36676  79999999999


Q ss_pred             CCCchhhhhc
Q 010200          245 GGKSRVRELA  254 (515)
Q Consensus       245 G~~S~vr~~l  254 (515)
                      |.+|.++...
T Consensus       194 Gg~s~~~~~~  203 (602)
T 1kf6_A          194 GGAGRVYRYN  203 (602)
T ss_dssp             CCCGGGSSSB
T ss_pred             CCCcccccCc
Confidence            9999987654

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=99.02  E-value=7.3e-10  Score=108.05  Aligned_cols=117  Identities=21%  Similarity=0.251  Sum_probs=82.5

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      ++||+||||||+|+++|+.|++.    |++|+|+|+....   .|      .                         .  
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~----g~~v~li~~~~gG---~~------~-------------------------~--   40 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARK----GIRTGLMGERFGG---QI------L-------------------------D--   40 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTT----TCCEEEECSSTTG---GG------G-------------------------G--
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC----CCcEEEEeCCCCc---ee------c-------------------------c--
Confidence            37999999999999999999996    9999999864210   00      0                         0  


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                        . ..+  .        .+.     ..   ....+..+...|.+.+.+.+ ++++.+++|+.+..         +.+  
T Consensus        41 --~-~~~--~--------~~~-----~~---~~~~~~~~~~~~~~~~~~~~-v~~~~~~~v~~i~~---------~~~--   87 (310)
T 1fl2_A           41 --T-VDI--E--------NYI-----SV---PKTEGQKLAGALKVHVDEYD-VDVIDSQSASKLIP---------AAV--   87 (310)
T ss_dssp             --C-CEE--C--------CBT-----TB---SSEEHHHHHHHHHHHHHTSC-EEEECSCCEEEEEC---------CSS--
T ss_pred             --c-ccc--c--------ccc-----Cc---CCCCHHHHHHHHHHHHHHcC-CeEEccCEEEEEEe---------ccc--
Confidence              0 000  0        000     00   01356778888888888887 99999999999965         100  


Q ss_pred             cccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200          215 ATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                            .+..+.+.+++|+++.+|.||.|+|.++..
T Consensus        88 ------~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~  117 (310)
T 1fl2_A           88 ------EGGLHQIETASGAVLKARSIIVATGAKWRN  117 (310)
T ss_dssp             ------TTCCEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             ------CCceEEEEECCCCEEEeCEEEECcCCCcCC
Confidence                  123578888888889999999999987643

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=99.02  E-value=4.6e-10  Score=109.97  Aligned_cols=115  Identities=15%  Similarity=0.211  Sum_probs=79.9

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      +.+||+||||||+|+++|+.|++.    |++|+|||+.. ++              +. +                ... 
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~~----g~~v~lie~~~-~g--------------g~-~----------------~~~-   46 (320)
T 1trb_A            4 KHSKLLILGSGPAGYTAAVYAARA----NLQPVLITGME-KG--------------GQ-L----------------TTT-   46 (320)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTT----TCCCEEECCSS-TT--------------GG-G----------------GGC-
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHC----CCcEEEEccCC-CC--------------ce-E----------------ecc-
Confidence            468999999999999999999996    89999999652 21              00 0                000 


Q ss_pred             hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (515)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~  213 (515)
                       . ...             .++  .     ....+.+..+...+.+.+.+.+ ++++.++ |+.+..             
T Consensus        47 -~-~~~-------------~~~--~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-v~~i~~-------------   89 (320)
T 1trb_A           47 -T-EVE-------------NWP--G-----DPNDLTGPLLMERMHEHATKFE-TEIIFDH-INKVDL-------------   89 (320)
T ss_dssp             -S-BCC-------------CST--T-----CCSSCBHHHHHHHHHHHHHHTT-CEEECCC-EEEEEC-------------
T ss_pred             -h-hhh-------------hCC--C-----CCCCCCHHHHHHHHHHHHHHCC-CEEEEee-eeEEEe-------------
Confidence             0 000             000  0     0012456778888888888887 8999985 888865             


Q ss_pred             CcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200          214 SATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                             ....+++ ..++.++.+|.||.|+|.++..
T Consensus        90 -------~~~~~~v-~~~~~~~~~~~lv~AtG~~~~~  118 (320)
T 1trb_A           90 -------QNRPFRL-NGDNGEYTCDALIIATGASARY  118 (320)
T ss_dssp             -------SSSSEEE-EESSCEEEEEEEEECCCEEECC
T ss_pred             -------cCCEEEE-EeCCCEEEcCEEEECCCCCcCC
Confidence                   3345666 5677789999999999987543

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=99.01  E-value=1.1e-09  Score=115.27  Aligned_cols=38  Identities=29%  Similarity=0.576  Sum_probs=34.0

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      ..++||+|||||++||++|+.|++     |.+|+|+||.+..+
T Consensus         6 ~~~~DVvVVG~G~AGl~aAl~la~-----G~~V~vlEk~~~~~   43 (540)
T 1chu_A            6 EHSCDVLIIGSGAAGLSLALRLAD-----QHQVIVLSKGPVTE   43 (540)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTT-----TSCEEEECSSCTTC
T ss_pred             CCCCCEEEECccHHHHHHHHHHhc-----CCcEEEEECCCCCC
Confidence            346899999999999999999998     68999999998654

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.01  E-value=5.2e-10  Score=115.58  Aligned_cols=151  Identities=13%  Similarity=0.109  Sum_probs=87.0

Q ss_pred             ccEEEECCCHHHHHHHHHHhc---CCCCCCcE---EEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchh
Q 010200           56 YDVAVVGGGMVGMALACSLAS---MPLTKHLS---VAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQY  129 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~---~~~~~G~~---V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~  129 (515)
                      +||+||||||+|+++|..|++   .    |++   |+|||+.+.++........   .    +..+        +|+.  
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~----G~~~~~V~v~E~~~~~GG~w~~~~~---~----g~~~--------~g~~--   61 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEK----GAEIPELVCFEKQADWGGQWNYTWR---T----GLDE--------NGEP--   61 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHT----TCCCCEEEEECSSSSSCGGGSCCSC---C----SBCT--------TSSB--
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhc----CCCCCcEEEEEcCCCCCCEeecCCC---C----Cccc--------cCCC--
Confidence            699999999999999999998   7    888   9999999876321110000   0    0000        0100  


Q ss_pred             hhhhhccccceEEEEeCCCcccee---eecccCCCCcceEEechHHHHHHHHHHHhcCCCce--EEcCCeeEEEEeCCCC
Q 010200          130 VQQHRHAYFDKMQVWDYTGLGYTK---YNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQK--TIYPSRLTSMALLPSS  204 (515)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~--i~~~~~v~~i~~~~~~  204 (515)
                      +...   ....+.  .........   ++............+++..+.++|.+.+++.+ ++  ++++++|+.++..   
T Consensus        62 ~~~~---~y~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g-v~~~i~~~~~V~~v~~~---  132 (464)
T 2xve_A           62 VHSS---MYRYLW--SNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAG-VRKYIRFNTAVRHVEFN---  132 (464)
T ss_dssp             CCCC---CCTTCB--CSSCGGGTCBTTBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHT-CGGGEECSEEEEEEEEE---
T ss_pred             CcCc---cccchh--hcCChhhcccCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcC-CcceEEeCCEEEEEEEc---
Confidence            0000   000000  000000000   00000000000123578899999999988877 77  9999999999761   


Q ss_pred             CCcccCCCCCcccccccCCeeEEEcCC---C--cEEEeeEEEEecCCCchhh
Q 010200          205 SSISVDSTPSATTLFTKGHLAKLDLSD---G--TSLYAKLVVGADGGKSRVR  251 (515)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~v~~~~---g--~~~~ad~vV~AdG~~S~vr  251 (515)
                                     +....++|++.+   |  .++.+|.||+|+|.+|.-+
T Consensus       133 ---------------~~~~~~~V~~~~~~~g~~~~~~~d~VVvAtG~~s~p~  169 (464)
T 2xve_A          133 ---------------EDSQTFTVTVQDHTTDTIYSEEFDYVVCCTGHFSTPY  169 (464)
T ss_dssp             ---------------TTTTEEEEEEEETTTTEEEEEEESEEEECCCSSSSBC
T ss_pred             ---------------CCCCcEEEEEEEcCCCceEEEEcCEEEECCCCCCCCc
Confidence                           112356666654   4  4789999999999876544

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.98  E-value=2.1e-09  Score=104.94  Aligned_cols=119  Identities=16%  Similarity=0.163  Sum_probs=78.4

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      +.|||+||||||||+++|+.|++.    |++|+|||+....+  .|      ..+                    .+.. 
T Consensus         3 ~~yDvvIIG~GpAGl~AA~~la~~----g~~v~liE~~~~gg--~~------~~G--------------------~~~~-   49 (314)
T 4a5l_A            3 NIHDVVIIGSGPAAHTAAIYLGRS----SLKPVMYEGFMAGG--VA------AGG--------------------QLTT-   49 (314)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHT----TCCCEEECCSSGGG--CC------TTC--------------------GGGG-
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHC----CCCEEEEecCCCCC--cc------cCC--------------------CcCC-
Confidence            459999999999999999999996    99999999976431  00      000                    0000 


Q ss_pred             hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (515)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~  213 (515)
                          ...  +.+..+             .+  ..+...++...+.+.+.+.+ .++..+ .+.....             
T Consensus        50 ----~~~--i~~~~g-------------~~--~~i~~~~l~~~~~~~~~~~~-~~~~~~-~v~~~~~-------------   93 (314)
T 4a5l_A           50 ----TTI--IENFPG-------------FP--NGIDGNELMMNMRTQSEKYG-TTIITE-TIDHVDF-------------   93 (314)
T ss_dssp             ----SSE--ECCSTT-------------CT--TCEEHHHHHHHHHHHHHHTT-CEEECC-CEEEEEC-------------
T ss_pred             ----hHH--hhhccC-------------Cc--ccCCHHHHHHHHHHHHhhcC-cEEEEe-EEEEeec-------------
Confidence                000  000000             00  12456678888888888887 777755 5555543             


Q ss_pred             CcccccccCCeeEEEcCCCcEEEeeEEEEecCCCc
Q 010200          214 SATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKS  248 (515)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S  248 (515)
                             ......+...++.++.+|.||.|+|+..
T Consensus        94 -------~~~~~~~~~~~~~~~~~~~liiATG~~~  121 (314)
T 4a5l_A           94 -------STQPFKLFTEEGKEVLTKSVIIATGATA  121 (314)
T ss_dssp             -------SSSSEEEEETTCCEEEEEEEEECCCEEE
T ss_pred             -------CCCceEEEECCCeEEEEeEEEEcccccc
Confidence                   3344566667888999999999999754

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.96  E-value=2.2e-09  Score=113.93  Aligned_cols=63  Identities=14%  Similarity=0.096  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEE-cCCCc--EEEeeEEEEecCCC
Q 010200          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLD-LSDGT--SLYAKLVVGADGGK  247 (515)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~g~--~~~ad~vV~AdG~~  247 (515)
                      ..+...|.+.+.+.| ++|+++++|+++..         +  +++     ...++.+. ..+|+  ++.|+.||.|+|.+
T Consensus       143 ~~l~~~L~~~~~~~g-v~i~~~~~v~~L~~---------~--~~g-----~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~  205 (588)
T 2wdq_A          143 HALLHTLYQQNLKNH-TTIFSEWYALDLVK---------N--QDG-----AVVGCTALCIETGEVVYFKARATVLATGGA  205 (588)
T ss_dssp             HHHHHHHHHHHHHTT-CEEEETEEEEEEEE---------C--TTS-----CEEEEEEEETTTCCEEEEEEEEEEECCCCC
T ss_pred             HHHHHHHHHHHHhCC-CEEEeCcEEEEEEE---------C--CCC-----EEEEEEEEEcCCCeEEEEEcCEEEECCCCC
Confidence            678899999998887 99999999999976         0  001     11223333 24565  68999999999999


Q ss_pred             chh
Q 010200          248 SRV  250 (515)
Q Consensus       248 S~v  250 (515)
                      |.+
T Consensus       206 ~~~  208 (588)
T 2wdq_A          206 GRI  208 (588)
T ss_dssp             GGG
T ss_pred             ccc
Confidence            875

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.95  E-value=1.3e-09  Score=112.76  Aligned_cols=155  Identities=14%  Similarity=0.142  Sum_probs=86.4

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCC-----cEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCch
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKH-----LSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQ  128 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G-----~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~  128 (515)
                      ..+||+||||||+|+++|+.|++.    |     ++|+|||+.+.++....   ... .  +..++.   .+++.+..  
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~----g~~~~~~~v~liE~~~~~g~~~~---~~~-~--~~~~~~---~~~~~l~~--   93 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQER----AQAQGALEVLFLDKQGDYRWHGN---TLV-S--QSELQI---SFLKDLVS--   93 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHH----HHHHCCCCEEEEESCSSCCSSGG---GCC-S--SCBCSS---CTTSSSST--
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhc----ccccCcccEEEEecCCCCCCcCC---CCC-C--CCcCCc---chhhcccc--
Confidence            458999999999999999999996    8     89999999987631100   000 0  000000   00000000  


Q ss_pred             hhhhhhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcc
Q 010200          129 YVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSIS  208 (515)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~  208 (515)
                       +..... .+.-..+....+ ....+.      ........+..+..+|...+.+.+ ++++++++|++++..       
T Consensus        94 -~~~p~~-~~~~~~~l~~~~-~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~-~~i~~~~~V~~i~~~-------  156 (463)
T 3s5w_A           94 -LRNPTS-PYSFVNYLHKHD-RLVDFI------NLGTFYPCRMEFNDYLRWVASHFQ-EQSRYGEEVLRIEPM-------  156 (463)
T ss_dssp             -TTCTTC-TTSHHHHHHHTT-CHHHHH------HHCCSCCBHHHHHHHHHHHHTTCT-TTEEESEEEEEEEEE-------
T ss_pred             -ccCCCC-CCChhHhhhhcC-ceeecc------cccCCCCCHHHHHHHHHHHHHHcC-CeEEeCCEEEEEEEe-------
Confidence             000000 000000000000 000000      000123467888899988888887 899999999999760       


Q ss_pred             cCCCCCcccccccCC--eeEEEcCCCc----EEEeeEEEEecCCCchh
Q 010200          209 VDSTPSATTLFTKGH--LAKLDLSDGT----SLYAKLVVGADGGKSRV  250 (515)
Q Consensus       209 ~~~~~~~~~~~~~~~--~~~v~~~~g~----~~~ad~vV~AdG~~S~v  250 (515)
                        .        +...  .++|...+|.    ++.+|.||+|+|....+
T Consensus       157 --~--------~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG~~p~~  194 (463)
T 3s5w_A          157 --L--------SAGQVEALRVISRNADGEELVRTTRALVVSPGGTPRI  194 (463)
T ss_dssp             --E--------ETTEEEEEEEEEEETTSCEEEEEESEEEECCCCEECC
T ss_pred             --c--------CCCceEEEEEEEecCCCceEEEEeCEEEECCCCCCCC
Confidence              0        0122  2467666665    89999999999985443

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=98.95  E-value=3.3e-09  Score=109.68  Aligned_cols=62  Identities=16%  Similarity=0.074  Sum_probs=45.9

Q ss_pred             chHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCee---EEEcCCCcEEEeeEEEEecC
Q 010200          169 ENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLA---KLDLSDGTSLYAKLVVGADG  245 (515)
Q Consensus       169 ~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~g~~~~ad~vV~AdG  245 (515)
                      ....+...|.+.+++.| ++++.+++| ++..                    +++.+   .+...+| ++.+|.||+|+|
T Consensus       117 ~g~~l~~~L~~~~~~~g-v~i~~~~~v-~l~~--------------------~~~~v~Gv~v~~~~g-~~~a~~VVlAtG  173 (472)
T 2e5v_A          117 TGREIFNFLLKLAREEG-IPIIEDRLV-EIRV--------------------KDGKVTGFVTEKRGL-VEDVDKLVLATG  173 (472)
T ss_dssp             HHHHHHHHHHHHHHHTT-CCEECCCEE-EEEE--------------------ETTEEEEEEETTTEE-ECCCSEEEECCC
T ss_pred             CHHHHHHHHHHHHHhCC-CEEEECcEE-EEEE--------------------eCCEEEEEEEEeCCC-eEEeeeEEECCC
Confidence            35678889999887776 999999999 9975                    22222   3322333 477999999999


Q ss_pred             CCchhhhh
Q 010200          246 GKSRVREL  253 (515)
Q Consensus       246 ~~S~vr~~  253 (515)
                      .+|.++..
T Consensus       174 g~~~~~~~  181 (472)
T 2e5v_A          174 GYSYLYEY  181 (472)
T ss_dssp             CCGGGSSS
T ss_pred             CCcccCcc
Confidence            99988664

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=98.95  E-value=9.4e-09  Score=107.15  Aligned_cols=59  Identities=15%  Similarity=0.086  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR  249 (515)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~  249 (515)
                      ..+.+.|.+.+.+.|+++|+++++|++|+.                    .++.++|++.+|+++.||.||.|.|....
T Consensus       255 ~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~--------------------~~~~v~v~~~~g~~~~ad~vI~a~~~~~l  313 (495)
T 2vvm_A          255 SAFARRFWEEAAGTGRLGYVFGCPVRSVVN--------------------ERDAARVTARDGREFVAKRVVCTIPLNVL  313 (495)
T ss_dssp             HHHHHHHHHHHHTTTCEEEESSCCEEEEEE--------------------CSSSEEEEETTCCEEEEEEEEECCCGGGG
T ss_pred             HHHHHHHHHHhhhcCceEEEeCCEEEEEEE--------------------cCCEEEEEECCCCEEEcCEEEECCCHHHH
Confidence            356677778887775588999999999986                    33458888888888999999999997543

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=98.93  E-value=1e-09  Score=114.92  Aligned_cols=42  Identities=36%  Similarity=0.429  Sum_probs=37.0

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS   97 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~   97 (515)
                      +.++||||||||++||++|+.|+++   .|++|+|||+++.++..
T Consensus         8 ~~~~DVvIIGaGisGLsaA~~L~k~---~G~~V~VlE~~~~~GG~   49 (513)
T 4gde_A            8 DISVDVLVIGAGPTGLGAAKRLNQI---DGPSWMIVDSNETPGGL   49 (513)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHH---CCSCEEEEESSSSCCGG
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhh---CCCCEEEEECCCCCcCC
Confidence            4569999999999999999999874   39999999999988643

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.92  E-value=5.3e-09  Score=111.27  Aligned_cols=63  Identities=19%  Similarity=0.097  Sum_probs=47.1

Q ss_pred             hHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEc-CCCc--EEEeeEEEEecCC
Q 010200          170 NKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL-SDGT--SLYAKLVVGADGG  246 (515)
Q Consensus       170 r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~g~--~~~ad~vV~AdG~  246 (515)
                      ...+...|.+.+.+.| ++|+.++.|+++..+            ++     ...++.+.. .+|+  ++.|+.||.|+|.
T Consensus       154 G~~l~~~L~~~~~~~g-v~i~~~~~v~~Li~~------------~g-----~v~Gv~~~~~~~G~~~~i~A~~VVlATGG  215 (621)
T 2h88_A          154 GHSLLHTLYGRSLRYD-TSYFVEYFALDLLME------------NG-----ECRGVIALCIEDGTIHRFRAKNTVIATGG  215 (621)
T ss_dssp             HHHHHHHHHHHHTTSC-CEEEETEEEEEEEEE------------TT-----EEEEEEEEETTTCCEEEEEEEEEEECCCC
T ss_pred             HHHHHHHHHHHHHhCC-CEEEEceEEEEEEEE------------CC-----EEEEEEEEEcCCCcEEEEEcCeEEECCCc
Confidence            3578899999998887 999999999999760            00     112233332 4665  6899999999999


Q ss_pred             Cchh
Q 010200          247 KSRV  250 (515)
Q Consensus       247 ~S~v  250 (515)
                      ++.+
T Consensus       216 ~~~~  219 (621)
T 2h88_A          216 YGRT  219 (621)
T ss_dssp             CGGG
T ss_pred             cccc
Confidence            9976

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.89  E-value=4e-09  Score=110.56  Aligned_cols=118  Identities=23%  Similarity=0.325  Sum_probs=83.8

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhh
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (515)
                      ...+||+||||||+|+++|+.|++.    |++|+|+|+....   .|      ..               ..++      
T Consensus       210 ~~~~dVvIIGgG~AGl~aA~~la~~----G~~v~lie~~~GG---~~------~~---------------~~~~------  255 (521)
T 1hyu_A          210 RDAYDVLIVGSGPAGAAAAVYSARK----GIRTGLMGERFGG---QV------LD---------------TVDI------  255 (521)
T ss_dssp             SCCEEEEEECCSHHHHHHHHHHHHT----TCCEEEECSSTTG---GG------TT---------------CSCB------
T ss_pred             cCcccEEEECCcHHHHHHHHHHHhC----CCeEEEEECCCCC---cc------cc---------------cccc------
Confidence            3468999999999999999999996    9999999863210   00      00               0000      


Q ss_pred             hhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCC
Q 010200          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (515)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~  212 (515)
                            .             .+.  .   .   ....+..+...|.+.+.+.| ++++.+++|+.+..         +. 
T Consensus       256 ------~-------------~~~--~---~---~~~~~~~l~~~l~~~~~~~g-v~v~~~~~v~~i~~---------~~-  297 (521)
T 1hyu_A          256 ------E-------------NYI--S---V---PKTEGQKLAGALKAHVSDYD-VDVIDSQSASKLVP---------AA-  297 (521)
T ss_dssp             ------C-------------CBT--T---B---SSBCHHHHHHHHHHHHHTSC-EEEECSCCEEEEEC---------CS-
T ss_pred             ------c-------------ccC--C---C---CCCCHHHHHHHHHHHHHHcC-CEEEcCCEEEEEEe---------cc-
Confidence                  0             000  0   0   01346678888999998887 99999999999964         00 


Q ss_pred             CCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200          213 PSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR  249 (515)
Q Consensus       213 ~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~  249 (515)
                             +.+..++|.+++|.++.+|.||.|+|.++.
T Consensus       298 -------~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~  327 (521)
T 1hyu_A          298 -------TEGGLHQIETASGAVLKARSIIIATGAKWR  327 (521)
T ss_dssp             -------STTSCEEEEETTSCEEEEEEEEECCCEEEC
T ss_pred             -------CCCceEEEEECCCCEEEcCEEEECCCCCcC
Confidence                   012457888888889999999999998654

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.88  E-value=7.2e-09  Score=111.03  Aligned_cols=62  Identities=16%  Similarity=0.071  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEE-cCCCc--EEEeeEEEEecCCC
Q 010200          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLD-LSDGT--SLYAKLVVGADGGK  247 (515)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~g~--~~~ad~vV~AdG~~  247 (515)
                      ..+...|.+.+.+.| ++|+.++.|+++..+            ++     ...++.+. ..+|+  .+.||.||.|+|.+
T Consensus       158 ~~l~~~L~~~a~~~g-v~i~~~~~v~~L~~~------------~g-----~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~  219 (660)
T 2bs2_A          158 HTMLFAVANECLKLG-VSIQDRKEAIALIHQ------------DG-----KCYGAVVRDLVTGDIIAYVAKGTLIATGGY  219 (660)
T ss_dssp             HHHHHHHHHHHHHHT-CEEECSEEEEEEEEE------------TT-----EEEEEEEEETTTCCEEEEECSEEEECCCCC
T ss_pred             HHHHHHHHHHHHhCC-CEEEECcEEEEEEec------------CC-----EEEEEEEEECCCCcEEEEEcCEEEEccCcc
Confidence            478899999988887 999999999999750            00     11233332 25665  58999999999999


Q ss_pred             chh
Q 010200          248 SRV  250 (515)
Q Consensus       248 S~v  250 (515)
                      +.+
T Consensus       220 ~~~  222 (660)
T 2bs2_A          220 GRI  222 (660)
T ss_dssp             GGG
T ss_pred             hhh
Confidence            976

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.86  E-value=1.1e-08  Score=99.68  Aligned_cols=35  Identities=26%  Similarity=0.496  Sum_probs=32.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ..|||+||||||||+++|+.|++.    |++|+||||..
T Consensus         5 ~~yDvvIIG~GpAGl~aA~~l~~~----g~~V~liE~~~   39 (312)
T 4gcm_A            5 IDFDIAIIGAGPAGMTAAVYASRA----NLKTVMIERGI   39 (312)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHT----TCCEEEEESSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC----CCCEEEEecCC
Confidence            479999999999999999999996    99999999864

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=98.86  E-value=1.9e-08  Score=105.61  Aligned_cols=70  Identities=30%  Similarity=0.409  Sum_probs=48.1

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCC--C-CCCCcEEEe---CHhHHHHHHHcCCc
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKE--D-PPDPRVSTV---TPATISFFKEIGAW  127 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~--~-~~~~~~~~l---~~~~~~~l~~lgl~  127 (515)
                      ..+||+|||||++||++|+.|++.    |++|+|||+++.++.+.+....  + .....+..+   .+...++++++|+.
T Consensus         3 ~~~~vvIIGaG~aGL~aA~~L~~~----G~~V~vlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~   78 (520)
T 1s3e_A            3 NKCDVVVVGGGISGMAAAKLLHDS----GLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELGLE   78 (520)
T ss_dssp             CBCSEEEECCBHHHHHHHHHHHHT----TCCEEEECSSSSSBTTCCEECCTTTSCEESSCCEECTTCHHHHHHHHHTTCC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHC----CCCEEEEeCCCCCCCceeecccCCCcccccCceEecCCcHHHHHHHHHcCCc
Confidence            457999999999999999999996    9999999999887544321110  0 001111122   34566788888874

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=98.85  E-value=6e-08  Score=105.66  Aligned_cols=39  Identities=23%  Similarity=0.508  Sum_probs=35.6

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK   96 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~   96 (515)
                      ..+||+|||||++|+++|+.|++.    |++|+|+|+...++.
T Consensus       335 ~~~~v~viG~G~~Gl~aA~~l~~~----g~~v~v~E~~~~~gg  373 (776)
T 4gut_A          335 HNKSVIIIGAGPAGLAAARQLHNF----GIKVTVLEAKDRIGG  373 (776)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHH----TCEEEEECSSSSSCT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC----CCcEEEEecccceec
Confidence            468999999999999999999996    999999999887754

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.84  E-value=3.4e-09  Score=109.60  Aligned_cols=143  Identities=17%  Similarity=0.157  Sum_probs=83.1

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeC---HhHHHHHHHcCCchhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVT---PATISFFKEIGAWQYVQ  131 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~l~~lgl~~~~~  131 (515)
                      ++||+||||||+|+++|+.|++.    |++|+|+|+.. .+              |..++   ..+..++...++++.+.
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~----G~~V~liE~~~-~g--------------G~~~~~g~~psk~ll~~~~~~~~~~   63 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQL----GLSTAIVEPKY-WG--------------GVCLNVGCIPSKALLRNAELVHIFT   63 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT----TCCEEEECSSC-TT--------------HHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC----CCeEEEEeCCC-CC--------------CcccccCchhhHHHHHHHHHHHHHH
Confidence            58999999999999999999996    99999999983 31              11111   11223344334444433


Q ss_pred             hhhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCC
Q 010200          132 QHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDS  211 (515)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~  211 (515)
                      .... . ..+.  ..   ....+.  ...... .  -....+...+.+.+.+.+ ++++.++.+. +             
T Consensus        64 ~~~~-~-~g~~--~~---~~~~~~--~~~~~~-~--~~~~~l~~~l~~~~~~~g-v~~~~g~~~~-i-------------  116 (464)
T 2a8x_A           64 KDAK-A-FGIS--GE---VTFDYG--IAYDRS-R--KVAEGRVAGVHFLMKKNK-ITEIHGYGTF-A-------------  116 (464)
T ss_dssp             HHTT-T-TTEE--EC---CEECHH--HHHHHH-H--HHHHHHHHHHHHHHHHTT-CEEECEEEEE-S-------------
T ss_pred             HHHH-h-cCCC--CC---CccCHH--HHHHHH-H--HHHHHHHHHHHHHHHhCC-CEEEEeEEEE-e-------------
Confidence            1111 1 1121  10   001100  000000 0  001345555666777666 9999887543 2             


Q ss_pred             CCCcccccccCCeeEEEcCCC--cEEEeeEEEEecCCCchhhh
Q 010200          212 TPSATTLFTKGHLAKLDLSDG--TSLYAKLVVGADGGKSRVRE  252 (515)
Q Consensus       212 ~~~~~~~~~~~~~~~v~~~~g--~~~~ad~vV~AdG~~S~vr~  252 (515)
                               +...+++.+.+|  .++.+|.||+|+|.++.+..
T Consensus       117 ---------d~~~v~V~~~~G~~~~~~~d~lViAtG~~~~~~~  150 (464)
T 2a8x_A          117 ---------DANTLLVDLNDGGTESVTFDNAIIATGSSTRLVP  150 (464)
T ss_dssp             ---------SSSEEEEEETTSCCEEEEEEEEEECCCEEECCCT
T ss_pred             ---------cCCeEEEEeCCCceEEEEcCEEEECCCCCCCCCC
Confidence                     225577877777  68999999999999876543

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.83  E-value=9.3e-09  Score=106.87  Aligned_cols=59  Identities=19%  Similarity=0.211  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                      ..+...|.+.+++.| ++++.+++|++++.                    .+..+.+.+.+|+++.+|.||.|+|..+..
T Consensus       232 ~~~~~~l~~~l~~~G-v~i~~~~~V~~i~~--------------------~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~~  290 (484)
T 3o0h_A          232 YDLRQLLNDAMVAKG-ISIIYEATVSQVQS--------------------TENCYNVVLTNGQTICADRVMLATGRVPNT  290 (484)
T ss_dssp             HHHHHHHHHHHHHHT-CEEESSCCEEEEEE--------------------CSSSEEEEETTSCEEEESEEEECCCEEECC
T ss_pred             HHHHHHHHHHHHHCC-CEEEeCCEEEEEEe--------------------eCCEEEEEECCCcEEEcCEEEEeeCCCcCC
Confidence            356777888888888 99999999999976                    334578888999899999999999986654

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=98.83  E-value=3.1e-08  Score=106.30  Aligned_cols=37  Identities=24%  Similarity=0.431  Sum_probs=33.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHh---c-CCCCCCcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLA---S-MPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~---~-~~~~~G~~V~v~E~~~~~   94 (515)
                      .++||||||||+|||++|+.|+   + .    |.+|+|+||....
T Consensus        21 ~~~DVvVIG~G~AGl~AAl~aa~~~~~~----G~~V~vlEK~~~~   61 (643)
T 1jnr_A           21 VETDILIIGGGFSGCGAAYEAAYWAKLG----GLKVTLVEKAAVE   61 (643)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTTT----TCCEEEECSSCTT
T ss_pred             ccCCEEEECcCHHHHHHHHHHhhhhhhC----CCeEEEEeCcCCC
Confidence            4689999999999999999999   5 5    8999999999864

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.81  E-value=4.9e-09  Score=108.79  Aligned_cols=37  Identities=27%  Similarity=0.472  Sum_probs=33.7

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      .++||+||||||+|+++|+.|++.    |++|+|+|+.+.+
T Consensus         4 ~~~dVvIIGgG~aGl~aA~~l~~~----G~~V~liE~~~~~   40 (478)
T 1v59_A            4 KSHDVVIIGGGPAGYVAAIKAAQL----GFNTACVEKRGKL   40 (478)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT----TCCEEEEESSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC----CCeEEEEecCCCc
Confidence            468999999999999999999996    8999999997655

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=98.77  E-value=4.1e-08  Score=105.10  Aligned_cols=68  Identities=16%  Similarity=0.130  Sum_probs=46.5

Q ss_pred             echHHHHHHHHHHHhcC--CCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEE-EcCCCc--EEEeeEEEE
Q 010200          168 VENKVLHSSLLSCMQNT--EFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKL-DLSDGT--SLYAKLVVG  242 (515)
Q Consensus       168 i~r~~l~~~L~~~~~~~--g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~g~--~~~ad~vV~  242 (515)
                      +....+...|.+.+.+.  + ++|+.++.|+++..+         .+..+     ...++.+ ...+|+  ++.|+.||.
T Consensus       163 ~~G~~i~~~L~~~a~~~~~g-V~i~~~~~v~dLi~~---------~~~~g-----~v~Gv~~~~~~~g~~~~i~Ak~VVL  227 (662)
T 3gyx_A          163 INGESYKVIVAEAAKNALGQ-DRIIERIFIVKLLLD---------KNTPN-----RIAGAVGFNLRANEVHIFKANAMVV  227 (662)
T ss_dssp             EEETSHHHHHHHHHHHHHCT-TTEECSEEECCCEEC---------SSSTT-----BEEEEEEEESSSSCEEEEECSEEEE
T ss_pred             CCHHHHHHHHHHHHHhcCCC-cEEEEceEEEEEEEe---------CCccc-----eEEEEEEEEcCCCcEEEEEeCEEEE
Confidence            45567888888888887  6 999999999998761         10000     1112222 224554  689999999


Q ss_pred             ecCCCchh
Q 010200          243 ADGGKSRV  250 (515)
Q Consensus       243 AdG~~S~v  250 (515)
                      |+|..+.+
T Consensus       228 ATGG~g~~  235 (662)
T 3gyx_A          228 ACGGAVNV  235 (662)
T ss_dssp             CCCCBCSS
T ss_pred             CCCccccc
Confidence            99999864

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.76  E-value=7.6e-09  Score=105.85  Aligned_cols=37  Identities=19%  Similarity=0.455  Sum_probs=32.8

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCc--EEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~--~V~v~E~~~~~   94 (515)
                      +.+||+|||||++|+++|..|++.    |+  +|+|+|+.+..
T Consensus         3 ~~~~vvIIGgG~aGl~aA~~l~~~----g~~~~V~lie~~~~~   41 (431)
T 1q1r_A            3 ANDNVVIVGTGLAGVEVAFGLRAS----GWEGNIRLVGDATVI   41 (431)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHT----TCCSEEEEECSCCSC
T ss_pred             CCCcEEEEcCHHHHHHHHHHHHcc----CcCCCEEEEECCCCC
Confidence            458999999999999999999996    66  89999988743

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.75  E-value=2.1e-08  Score=97.68  Aligned_cols=112  Identities=16%  Similarity=0.174  Sum_probs=76.8

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEE-EcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAI-IDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v-~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (515)
                      ..+||+|||||++|+++|+.|++.    |++|+| +|| ..++.. +                               ..
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~----g~~v~li~e~-~~~gG~-~-------------------------------~~   45 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRG----GLKNVVMFEK-GMPGGQ-I-------------------------------TS   45 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHH----TCSCEEEECS-SSTTGG-G-------------------------------GG
T ss_pred             CCceEEEECCCHHHHHHHHHHHHC----CCCeEEEEeC-CCCCce-e-------------------------------ee
Confidence            458999999999999999999996    899999 999 333100 0                               00


Q ss_pred             hhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCC
Q 010200          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDST  212 (515)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~  212 (515)
                      . . ..             ..++     .  ....+....+...+.+.+.+.+ ++++.+ +|+++ .            
T Consensus        46 ~-~-~~-------------~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~-v~~~~~-~v~~i-~------------   88 (315)
T 3r9u_A           46 S-S-EI-------------ENYP-----G--VAQVMDGISFMAPWSEQCMRFG-LKHEMV-GVEQI-L------------   88 (315)
T ss_dssp             C-S-CB-------------CCST-----T--CCSCBCHHHHHHHHHHHHTTTC-CEEECC-CEEEE-E------------
T ss_pred             e-c-ee-------------ccCC-----C--CCCCCCHHHHHHHHHHHHHHcC-cEEEEE-EEEEE-e------------
Confidence            0 0 00             0000     0  0012456788899999999888 999988 89888 6            


Q ss_pred             CCcccccccC--CeeEE-EcCCCcEEEeeEEEEecCCCc
Q 010200          213 PSATTLFTKG--HLAKL-DLSDGTSLYAKLVVGADGGKS  248 (515)
Q Consensus       213 ~~~~~~~~~~--~~~~v-~~~~g~~~~ad~vV~AdG~~S  248 (515)
                              +.  ..+.+ ...++ ++.+|.||.|+|...
T Consensus        89 --------~~~~~~~~v~~~~~~-~~~~d~lvlAtG~~~  118 (315)
T 3r9u_A           89 --------KNSDGSFTIKLEGGK-TELAKAVIVCTGSAP  118 (315)
T ss_dssp             --------ECTTSCEEEEETTSC-EEEEEEEEECCCEEE
T ss_pred             --------cCCCCcEEEEEecCC-EEEeCEEEEeeCCCC
Confidence                    22  44663 22334 899999999999743

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.75  E-value=1.3e-08  Score=105.49  Aligned_cols=37  Identities=32%  Similarity=0.510  Sum_probs=34.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      .++||+||||||+|+++|+.|++.    |++|+|+|+.+.+
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~~----g~~V~liE~~~~~   41 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQL----GFKTTCIEKRGAL   41 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHH----TCCEEEEECSSSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHC----CCeEEEEeCCCCc
Confidence            468999999999999999999996    8999999998765

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.73  E-value=1.4e-08  Score=104.92  Aligned_cols=37  Identities=35%  Similarity=0.473  Sum_probs=33.9

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      .++||+||||||+|+++|+.|++.    |++|+|+||.+.+
T Consensus         3 ~~~DVvVIGgG~aGl~aA~~l~~~----G~~V~liEk~~~~   39 (466)
T 3l8k_A            3 LKYDVVVIGAGGAGYHGAFRLAKA----KYNVLMADPKGEL   39 (466)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT----TCCEEEECTTSSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHhC----CCeEEEEECCCCC
Confidence            358999999999999999999996    9999999988765

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.72  E-value=6.9e-08  Score=101.12  Aligned_cols=37  Identities=30%  Similarity=0.459  Sum_probs=33.8

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ++.++||+||||||+|+++|+.|++.    |++|+|+|+.+
T Consensus        29 ~~~~~DVvVIGgGpaGl~aA~~la~~----G~~V~liEk~~   65 (519)
T 3qfa_A           29 KSYDYDLIIIGGGSGGLAAAKEAAQY----GKKVMVLDFVT   65 (519)
T ss_dssp             SSCSEEEEEECCSHHHHHHHHHHHHT----TCCEEEECCCC
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHhC----CCeEEEEeccC
Confidence            44579999999999999999999996    99999999975

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=98.70  E-value=8.1e-08  Score=98.33  Aligned_cols=58  Identities=10%  Similarity=0.125  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCC
Q 010200          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGK  247 (515)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~  247 (515)
                      ..|.+.|.+.+++.| ++|+.+++|++|..         +         +++..+.|.+.+|+++.||.||.+.|..
T Consensus       256 ~~L~~aL~r~~~~~G-g~i~l~t~V~~I~~---------d---------~~g~v~gV~~~~G~~i~Ad~VI~a~~~~  313 (475)
T 3p1w_A          256 GGIPEGFSRMCAING-GTFMLNKNVVDFVF---------D---------DDNKVCGIKSSDGEIAYCDKVICDPSYV  313 (475)
T ss_dssp             THHHHHHHHHHHHC---CEESSCCEEEEEE---------C---------TTSCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred             HHHHHHHHHHHHHcC-CEEEeCCeEEEEEE---------e---------cCCeEEEEEECCCcEEECCEEEECCCcc
Confidence            467788889899988 89999999999975         0         1234466888888899999999999987

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.69  E-value=1.2e-08  Score=105.89  Aligned_cols=38  Identities=42%  Similarity=0.621  Sum_probs=34.1

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      +.++||+|||||++|+++|+.|++.    |++|+|+|+.+.+
T Consensus         4 ~~~~dVvIIGaG~aGl~aA~~l~~~----G~~V~liE~~~~~   41 (482)
T 1ojt_A            4 DAEYDVVVLGGGPGGYSAAFAAADE----GLKVAIVERYKTL   41 (482)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHT----TCCEEEEESSSCS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhC----CCeEEEEeCCCCC
Confidence            3468999999999999999999996    9999999997655

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=98.67  E-value=3.4e-07  Score=94.13  Aligned_cols=70  Identities=33%  Similarity=0.400  Sum_probs=47.4

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCC-CC-CCCcEEEe---CHhHHHHHHHcCCc
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKE-DP-PDPRVSTV---TPATISFFKEIGAW  127 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~-~~-~~~~~~~l---~~~~~~~l~~lgl~  127 (515)
                      .++||+|||||++||++|+.|++.    |++|+|||++..++...+.... +. ....+..+   .+...++++++|+.
T Consensus         4 ~~~~v~iiG~G~~Gl~aA~~l~~~----g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~g~~   78 (453)
T 2yg5_A            4 LQRDVAIVGAGPSGLAAATALRKA----GLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVSPDQTALISLLDELGLK   78 (453)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSSCTTCCEEEETTEEEECSCCCBCTTCHHHHHHHHHTTCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC----CCcEEEEECCCCCCCceeccccCCceeccCCeEecCccHHHHHHHHHcCCc
Confidence            458999999999999999999996    9999999999887544321000 00 00000111   35566788888864

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=98.66  E-value=1.4e-07  Score=98.90  Aligned_cols=41  Identities=17%  Similarity=0.382  Sum_probs=36.8

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCC-cEEEEEcCCCCCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPALGKSN   98 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G-~~V~v~E~~~~~~~~~   98 (515)
                      ..+||+|||||++||++|+.|++.    | ++|+|||++..++.+.
T Consensus         7 ~~~~VvIIGaG~aGL~AA~~L~~~----G~~~V~VlEa~~riGGr~   48 (516)
T 1rsg_A            7 AKKKVIIIGAGIAGLKAASTLHQN----GIQDCLVLEARDRVGGRL   48 (516)
T ss_dssp             EEEEEEEECCBHHHHHHHHHHHHT----TCCSEEEECSSSSSBTTC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhc----CCCCEEEEeCCCCCCCce
Confidence            458999999999999999999996    8 9999999999886543

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.65  E-value=1.9e-08  Score=102.41  Aligned_cols=37  Identities=30%  Similarity=0.500  Sum_probs=33.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcE--EEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLS--VAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~--V~v~E~~~~~   94 (515)
                      +.+||+|||||++|+++|..|++.    |++  |+|+|+.+.+
T Consensus         8 ~~~~vvIIGaG~aGl~aA~~L~~~----g~~~~V~lie~~~~~   46 (415)
T 3lxd_A            8 ERADVVIVGAGHGGAQAAIALRQN----GFEGRVLVIGREPEI   46 (415)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT----TCCSCEEEEESSSSC
T ss_pred             CCCcEEEECChHHHHHHHHHHHcc----CcCCCEEEEecCCCC
Confidence            468999999999999999999997    666  9999998854

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.63  E-value=2.4e-08  Score=102.88  Aligned_cols=33  Identities=27%  Similarity=0.386  Sum_probs=31.4

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN   91 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~   91 (515)
                      ++||+|||||++|+++|+.|++.    |++|+|+|+.
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~----g~~V~lie~~   35 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQL----GQKVTIVEKG   35 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHT----TCCEEEEESS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC----CCeEEEEECC
Confidence            58999999999999999999996    8999999998

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.63  E-value=6.6e-08  Score=99.45  Aligned_cols=38  Identities=21%  Similarity=0.448  Sum_probs=33.7

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      .+||+|||||++|+++|+.|++.+  +|++|+|||+.+..
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~--~~~~V~vie~~~~~   40 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLK--PEWDVKVFEATEWV   40 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHC--TTSEEEEECSSSCC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhC--cCCCEEEEECCCcc
Confidence            479999999999999999999853  37899999998855

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=98.62  E-value=2.3e-07  Score=96.64  Aligned_cols=68  Identities=12%  Similarity=0.083  Sum_probs=49.5

Q ss_pred             EechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCC-----cEEEeeEEE
Q 010200          167 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG-----TSLYAKLVV  241 (515)
Q Consensus       167 ~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-----~~~~ad~vV  241 (515)
                      ...|.++.++|...+++.+ ..|+++++|++++..         +++..   ......++|+..++     .++.|+.||
T Consensus       141 ~p~r~E~~~Yl~~~A~~~~-~~vrf~~~V~~v~~~---------~~~~~---~~~~~~~~V~~~~~~~g~~~~~~ar~vV  207 (501)
T 4b63_A          141 LPARLEFEDYMRWCAQQFS-DVVAYGEEVVEVIPG---------KSDPS---SSVVDFFTVRSRNVETGEISARRTRKVV  207 (501)
T ss_dssp             CCBHHHHHHHHHHHHHTTG-GGEEESEEEEEEEEE---------CSSTT---SSCBCEEEEEEEETTTCCEEEEEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHcC-CceEcceEEEeeccc---------ccccc---ccccceEEEEEecCCCceEEEEEeCEEE
Confidence            4678999999999999887 789999999999861         11100   01224577776543     268999999


Q ss_pred             EecCCC
Q 010200          242 GADGGK  247 (515)
Q Consensus       242 ~AdG~~  247 (515)
                      .|+|..
T Consensus       208 latG~~  213 (501)
T 4b63_A          208 IAIGGT  213 (501)
T ss_dssp             ECCCCE
T ss_pred             ECcCCC
Confidence            999964

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.62  E-value=3.9e-08  Score=101.22  Aligned_cols=37  Identities=14%  Similarity=0.381  Sum_probs=33.2

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      +||+|||||++|+++|..|++.+  +|++|+|||+.+.+
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~--~g~~V~vie~~~~~   39 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKY--PQAEISLIDKQATV   39 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHC--SSSEEEEECSSSCC
T ss_pred             CCEEEECCCHHHHHHHHHHHhhC--cCCcEEEEECCCCC
Confidence            69999999999999999999853  38999999999866

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.60  E-value=1.5e-07  Score=97.13  Aligned_cols=59  Identities=14%  Similarity=0.160  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEE-cCCCcEEEeeEEEEecCCCch
Q 010200          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLD-LSDGTSLYAKLVVGADGGKSR  249 (515)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~g~~~~ad~vV~AdG~~S~  249 (515)
                      ..+...+.+.+++.| ++++.+++|++++.                   +.+..+.|. +++|+ +.+|.||.|.|....
T Consensus       211 ~~~~~~l~~~l~~~G-v~i~~~~~v~~i~~-------------------~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~  269 (463)
T 4dna_A          211 QDMRRGLHAAMEEKG-IRILCEDIIQSVSA-------------------DADGRRVATTMKHGE-IVADQVMLALGRMPN  269 (463)
T ss_dssp             HHHHHHHHHHHHHTT-CEEECSCCEEEEEE-------------------CTTSCEEEEESSSCE-EEESEEEECSCEEES
T ss_pred             HHHHHHHHHHHHHCC-CEEECCCEEEEEEE-------------------cCCCEEEEEEcCCCe-EEeCEEEEeeCcccC
Confidence            456778888888888 99999999999976                   112336788 88887 999999999998654


Q ss_pred             h
Q 010200          250 V  250 (515)
Q Consensus       250 v  250 (515)
                      .
T Consensus       270 ~  270 (463)
T 4dna_A          270 T  270 (463)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.60  E-value=8.1e-08  Score=96.55  Aligned_cols=37  Identities=22%  Similarity=0.356  Sum_probs=33.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ++.+|+|||||+||+++|..|++    .+.+|+|||+.+.+
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~----~~~~itlie~~~~~   44 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALG----KCDDITMINSEKYL   44 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTT----TCSCEEEECSSSSC
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhC----CCCEEEEEECCCCC
Confidence            45789999999999999999965    48999999999865

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.58  E-value=3e-08  Score=101.63  Aligned_cols=35  Identities=26%  Similarity=0.400  Sum_probs=31.9

Q ss_pred             ccEEEECCCHHHHHHHHHHhc---CCCCCCcEEEEEcCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLAS---MPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~---~~~~~G~~V~v~E~~~~~   94 (515)
                      .||+|||||++|+++|..|++   .    |++|+|||+.+..
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~----g~~Vtlie~~~~~   42 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGS----GHEVTLISANDYF   42 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGG----GSEEEEECSSSEE
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCC----cCEEEEEeCCCCC
Confidence            689999999999999999998   5    8999999998743

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.58  E-value=1.3e-08  Score=106.00  Aligned_cols=37  Identities=19%  Similarity=0.257  Sum_probs=33.4

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCC---cEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKH---LSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G---~~V~v~E~~~~~   94 (515)
                      +++||+|||||++|+++|..|++.    |   .+|+|||+.+..
T Consensus        34 m~~dvvIIGaG~aGl~aA~~l~~~----g~~~~~V~lie~~~~~   73 (490)
T 2bc0_A           34 WGSKIVVVGANHAGTACIKTMLTN----YGDANEIVVFDQNSNI   73 (490)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHH----HGGGSEEEEECSSSCC
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhc----CCCCCeEEEEECCCCC
Confidence            358999999999999999999996    6   999999998754

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=98.58  E-value=3.2e-07  Score=95.37  Aligned_cols=41  Identities=24%  Similarity=0.434  Sum_probs=36.7

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS   97 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~   97 (515)
                      +..+||+|||||++||++|+.|++.    |++|+|||+.+.++..
T Consensus         9 ~~~~~v~IIGaG~aGl~aA~~L~~~----g~~v~v~E~~~~~GG~   49 (489)
T 2jae_A            9 KGSHSVVVLGGGPAGLCSAFELQKA----GYKVTVLEARTRPGGR   49 (489)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSSCTT
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHC----CCCEEEEeccCCCCCc
Confidence            3568999999999999999999996    9999999999887654

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.56  E-value=4e-08  Score=99.68  Aligned_cols=37  Identities=14%  Similarity=0.314  Sum_probs=32.8

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCc--EEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~--~V~v~E~~~~~   94 (515)
                      .++||+|||||++|+++|..|++.    |.  +|+|+|+.+..
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~----g~~~~V~lie~~~~~   44 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQA----GYQGLITVVGDEAER   44 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHH----TCCSCEEEEESSCSC
T ss_pred             CCCcEEEECChHHHHHHHHHHHcc----CCCCeEEEEECCCCC
Confidence            468999999999999999999996    66  59999998754

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.56  E-value=1.2e-07  Score=98.61  Aligned_cols=39  Identities=26%  Similarity=0.435  Sum_probs=33.0

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      +++++||+||||||+|+++|+.|++.    |++|+|+||.+.+
T Consensus        22 ~m~~~dVvVIGgG~aGl~aA~~la~~----G~~V~liEk~~~~   60 (491)
T 3urh_A           22 SMMAYDLIVIGSGPGGYVCAIKAAQL----GMKVAVVEKRSTY   60 (491)
T ss_dssp             ----CCEEEECCSHHHHHHHHHHHHT----TCCEEEEESSSSS
T ss_pred             hcccCCEEEECCCHHHHHHHHHHHHC----CCeEEEEecCCCC
Confidence            34569999999999999999999996    9999999998765

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.55  E-value=1.1e-07  Score=98.33  Aligned_cols=36  Identities=33%  Similarity=0.554  Sum_probs=33.4

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ++||+|||||++|+++|+.|++.    |++|+|+|+.+.+
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~----g~~V~lie~~~~~   37 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQL----GMKTACVEKRGAL   37 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT----TCCEEEEESSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC----CCeEEEEeCCCCc
Confidence            58999999999999999999996    9999999998755

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.54  E-value=7.2e-08  Score=99.87  Aligned_cols=37  Identities=30%  Similarity=0.391  Sum_probs=33.9

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ..+||+||||||+|+++|+.|++.    |++|+|||+.+.+
T Consensus         5 ~~~dvvIIGgG~aGl~aA~~l~~~----g~~V~liE~~~~~   41 (474)
T 1zmd_A            5 IDADVTVIGSGPGGYVAAIKAAQL----GFKTVCIEKNETL   41 (474)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT----TCCEEEEECSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhC----CCeEEEEeCCCCc
Confidence            458999999999999999999996    8999999998755

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=98.54  E-value=4.1e-07  Score=92.95  Aligned_cols=58  Identities=7%  Similarity=-0.051  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR  249 (515)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~  249 (515)
                      ..+.+.|.+.+++.| ++|+++++|++|..                    .++.+.....+|+++.||.||.|.|.++.
T Consensus       234 ~~l~~~l~~~~~~~G-~~i~~~~~V~~I~~--------------------~~~~v~~v~~~g~~~~ad~VV~a~~~~~~  291 (433)
T 1d5t_A          234 GELPQGFARLSAIYG-GTYMLNKPVDDIIM--------------------ENGKVVGVKSEGEVARCKQLICDPSYVPD  291 (433)
T ss_dssp             THHHHHHHHHHHHHT-CCCBCSCCCCEEEE--------------------ETTEEEEEEETTEEEECSEEEECGGGCGG
T ss_pred             HHHHHHHHHHHHHcC-CEEECCCEEEEEEE--------------------eCCEEEEEEECCeEEECCEEEECCCCCcc
Confidence            477888888888888 89999999999976                    23444433357888999999999999875

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.53  E-value=1.5e-07  Score=96.98  Aligned_cols=36  Identities=31%  Similarity=0.540  Sum_probs=33.1

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ++||+||||||+|+++|+.|++.    |++|+|+|+.+.+
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~----g~~V~lie~~~~~   36 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQL----GMKVGVVEKEKAL   36 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT----TCCEEEEESSSSS
T ss_pred             CCCEEEECCChhHHHHHHHHHHC----CCeEEEEeCCCCC
Confidence            37999999999999999999996    8999999998755

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.52  E-value=1.3e-07  Score=97.82  Aligned_cols=38  Identities=24%  Similarity=0.418  Sum_probs=31.2

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ++||+|||||++|+++|+.|++.+  +|++|+|||+.+.+
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~--~g~~Vtvie~~~~~   40 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLD--PEAHVTMIDQASRI   40 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHC--TTSEEEEECCC---
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhC--cCCCEEEEECCCcc
Confidence            469999999999999999999853  38999999999865

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.52  E-value=3.9e-08  Score=102.06  Aligned_cols=38  Identities=16%  Similarity=0.371  Sum_probs=32.8

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      .+||+|||||++|+++|+.|++.+  +|.+|+|||+.+..
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~--~g~~V~lie~~~~~   73 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRND--ENANVVTLEKGEIY   73 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHC--TTCEEEEECSSSCC
T ss_pred             cceEEEECCCHHHHHHHHHHHhhC--cCCcEEEEECCCCC
Confidence            369999999999999999999842  38999999998755

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.49  E-value=6.4e-08  Score=98.22  Aligned_cols=35  Identities=23%  Similarity=0.311  Sum_probs=31.8

Q ss_pred             ccEEEECCCHHHHHHHHHHhc---CCCCCCcEEEEEcCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLAS---MPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~---~~~~~G~~V~v~E~~~~~   94 (515)
                      .||+|||||++|+++|+.|++   .    |++|+|||+++..
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~----g~~V~vie~~~~~   39 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGS----KADVKVINKSRFS   39 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGG----GSEEEEEESSSEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCC----CCeEEEEeCCCCc
Confidence            379999999999999999998   6    8999999998844

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.49  E-value=4.8e-07  Score=90.91  Aligned_cols=101  Identities=22%  Similarity=0.315  Sum_probs=81.2

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      ..+|+|||||+.|+.+|..|++.    |.+|+|+|+.+.+.          .                            
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~----g~~Vtlv~~~~~~~----------~----------------------------  182 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSG----GYQLDVVAPCEQVM----------P----------------------------  182 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSSSSS----------T----------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhC----CCeEEEEecCcchh----------h----------------------------
Confidence            46899999999999999999996    89999999987541          0                            


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                                   .                   .....+...|.+.+++.| ++++++++|++++.              
T Consensus       183 -------------~-------------------~~~~~~~~~l~~~l~~~g-v~i~~~~~v~~i~~--------------  215 (384)
T 2v3a_A          183 -------------G-------------------LLHPAAAKAVQAGLEGLG-VRFHLGPVLASLKK--------------  215 (384)
T ss_dssp             -------------T-------------------TSCHHHHHHHHHHHHTTT-CEEEESCCEEEEEE--------------
T ss_pred             -------------c-------------------ccCHHHHHHHHHHHHHcC-CEEEeCCEEEEEEe--------------
Confidence                         0                   001245567777888887 99999999999975              


Q ss_pred             cccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200          215 ATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                            .+..+.+.+.+|+++.+|.||.|+|.++..
T Consensus       216 ------~~~~~~v~~~~g~~i~~d~vv~a~G~~p~~  245 (384)
T 2v3a_A          216 ------AGEGLEAHLSDGEVIPCDLVVSAVGLRPRT  245 (384)
T ss_dssp             ------ETTEEEEEETTSCEEEESEEEECSCEEECC
T ss_pred             ------cCCEEEEEECCCCEEECCEEEECcCCCcCH
Confidence                  334578888899899999999999987754

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.49  E-value=1.6e-07  Score=97.36  Aligned_cols=37  Identities=30%  Similarity=0.455  Sum_probs=34.1

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ++|||+||||||+|+++|+.|++.    |++|+|+|+.+.+
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~----G~~V~liEk~~~~   38 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQL----GLKTALIEKYKGK   38 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHH----TCCEEEEECCBCT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhC----CCEEEEEeCCCcc
Confidence            469999999999999999999996    9999999998754

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.49  E-value=1.8e-07  Score=99.63  Aligned_cols=40  Identities=18%  Similarity=0.304  Sum_probs=35.0

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      +...||+|||||++|+++|+.|++.+  +|++|+|||+.+..
T Consensus        34 ~~~~~VvIIGgG~AGl~aA~~L~~~~--~g~~V~vie~~~~~   73 (588)
T 3ics_A           34 WGSRKIVVVGGVAGGASVAARLRRLS--EEDEIIMVERGEYI   73 (588)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHC--SSSEEEEECSSSCS
T ss_pred             ccCCCEEEECCcHHHHHHHHHHHhhC--cCCCEEEEECCCCc
Confidence            44679999999999999999999853  38999999999865

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.48  E-value=9.9e-07  Score=92.24  Aligned_cols=59  Identities=15%  Similarity=0.014  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                      .++...+.+.+++.| ++++.++.+..++.                    .+..+.+.+.++.++.+|.|+.|.|....+
T Consensus       263 ~ei~~~l~~~l~~~g-i~~~~~~~v~~~~~--------------------~~~~~~v~~~~~~~~~~D~vLvAvGR~Pnt  321 (542)
T 4b1b_A          263 QQCAVKVKLYMEEQG-VMFKNGILPKKLTK--------------------MDDKILVEFSDKTSELYDTVLYAIGRKGDI  321 (542)
T ss_dssp             HHHHHHHHHHHHHTT-CEEEETCCEEEEEE--------------------ETTEEEEEETTSCEEEESEEEECSCEEESC
T ss_pred             hhHHHHHHHHHHhhc-ceeecceEEEEEEe--------------------cCCeEEEEEcCCCeEEEEEEEEcccccCCc
Confidence            456778888888888 99999999999976                    556788999999899999999999976554

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.47  E-value=9.3e-08  Score=96.89  Aligned_cols=35  Identities=29%  Similarity=0.489  Sum_probs=31.8

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCc--EEEEEcCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~--~V~v~E~~~~~   94 (515)
                      .||+|||||++|+++|..|++.    |+  +|+|||+.+..
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~----g~~~~V~lie~~~~~   38 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQA----KYPGRIALINDEKHL   38 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT----TCCSCEEEECCSSSS
T ss_pred             CCEEEEcChHHHHHHHHHHHhh----CcCCCEEEEeCCCCC
Confidence            5899999999999999999996    67  89999998854

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.46  E-value=3e-07  Score=91.79  Aligned_cols=35  Identities=34%  Similarity=0.500  Sum_probs=31.4

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ..||+||||||||+++|..|++.    | +|+|+|+.+..
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~~----g-~V~lie~~~~~   42 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQT----Y-EVTVIDKEPVP   42 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTT----S-EEEEECSSSSC
T ss_pred             CCcEEEECCcHHHHHHHHHHhhc----C-CEEEEECCCCC
Confidence            46999999999999999999996    8 99999998754

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.46  E-value=5.4e-08  Score=100.03  Aligned_cols=37  Identities=14%  Similarity=0.191  Sum_probs=32.6

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      +||+|||||++|+++|..|++.+  +|.+|+|+|+.+..
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~--~g~~V~lie~~~~~   37 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLH--PDAEIQWYEKGDFI   37 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHC--TTSEEEEEESSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHhC--cCCeEEEEECCCcc
Confidence            48999999999999999999853  38999999998755

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.46  E-value=2e-07  Score=96.24  Aligned_cols=35  Identities=29%  Similarity=0.362  Sum_probs=32.4

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      .++||+|||||++|+++|+.|++.    |++|+|||++.
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~----g~~V~lie~~~   37 (467)
T 1zk7_A            3 PPVQVAVIGSGGAAMAAALKAVEQ----GAQVTLIERGT   37 (467)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC----CCEEEEEeCCC
Confidence            468999999999999999999996    89999999983

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.45  E-value=3.4e-07  Score=93.49  Aligned_cols=35  Identities=34%  Similarity=0.641  Sum_probs=30.9

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      +|||||||+||+++|..|++.+  ++++|+|+|+++.
T Consensus         4 ~VvIIGgG~aGl~aA~~L~~~~--~~~~VtlI~~~~~   38 (430)
T 3hyw_A            4 HVVVIGGGVGGIATAYNLRNLM--PDLKITLISDRPY   38 (430)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHC--TTCEEEEECSSSE
T ss_pred             cEEEECCCHHHHHHHHHHhccC--cCCeEEEEcCCCC
Confidence            6999999999999999999853  3689999999874

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.45  E-value=5.3e-08  Score=100.23  Aligned_cols=37  Identities=19%  Similarity=0.141  Sum_probs=32.7

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      +||+|||||++|+++|..|++.+  +|.+|+|+|+.+..
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~--~g~~V~lie~~~~~   37 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADH--PDADVTAYEMNDNI   37 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHC--TTCEEEEEESSSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhC--cCCcEEEEECCCCC
Confidence            58999999999999999999842  38999999998754

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.44  E-value=5e-07  Score=92.96  Aligned_cols=100  Identities=19%  Similarity=0.276  Sum_probs=78.9

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      ..+|+|||||++|+.+|..|++.    |.+|+|+|+.+.+.          +.     .                     
T Consensus       167 ~~~vvIiGgG~~g~e~A~~l~~~----g~~V~lv~~~~~~l----------~~-----~---------------------  206 (455)
T 2yqu_A          167 PKRLIVVGGGVIGLELGVVWHRL----GAEVIVLEYMDRIL----------PT-----M---------------------  206 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSSC----------TT-----S---------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCEEEEEecCCccc----------cc-----c---------------------
Confidence            35799999999999999999996    89999999987541          00     0                     


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                                                         ...+.+.|.+.+++.| ++++++++|++++.              
T Consensus       207 -----------------------------------~~~~~~~l~~~l~~~G-v~i~~~~~V~~i~~--------------  236 (455)
T 2yqu_A          207 -----------------------------------DLEVSRAAERVFKKQG-LTIRTGVRVTAVVP--------------  236 (455)
T ss_dssp             -----------------------------------CHHHHHHHHHHHHHHT-CEEECSCCEEEEEE--------------
T ss_pred             -----------------------------------CHHHHHHHHHHHHHCC-CEEEECCEEEEEEE--------------
Confidence                                               0134455666666777 99999999999975              


Q ss_pred             cccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200          215 ATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                            .+..+.+.+++|+++.+|.||.|+|.++..
T Consensus       237 ------~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~  266 (455)
T 2yqu_A          237 ------EAKGARVELEGGEVLEADRVLVAVGRRPYT  266 (455)
T ss_dssp             ------ETTEEEEEETTSCEEEESEEEECSCEEECC
T ss_pred             ------eCCEEEEEECCCeEEEcCEEEECcCCCcCC
Confidence                  334577888888899999999999988765

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.43  E-value=5.3e-07  Score=93.65  Aligned_cols=35  Identities=34%  Similarity=0.498  Sum_probs=32.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      .+|||+||||||+|+++|+.|++.    |++|+|+||.+
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~~----G~~V~liEk~~   39 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQL----GKKVAVADYVE   39 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT----TCCEEEECCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhC----CCeEEEEEecc
Confidence            569999999999999999999996    99999999854

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.43  E-value=3.1e-07  Score=93.22  Aligned_cols=35  Identities=29%  Similarity=0.549  Sum_probs=31.5

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcE--EEEEcCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLS--VAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~--V~v~E~~~~~   94 (515)
                      .+|+|||||+||+++|..|++.    |++  |+|+|+.+.+
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~----g~~~~V~li~~~~~~   39 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAE----GFEGRISLIGDEPHL   39 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCCSEEEEEECSSSS
T ss_pred             CCEEEEcccHHHHHHHHHHHcc----CcCCeEEEEECCCCC
Confidence            4899999999999999999997    665  9999998865

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.42  E-value=2.3e-07  Score=96.19  Aligned_cols=36  Identities=33%  Similarity=0.502  Sum_probs=32.7

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      +..+||+||||||+|+++|+.|++.    |++|+|+|++.
T Consensus        18 ~~~~dVvIIGgG~aGl~aA~~la~~----G~~V~liE~~~   53 (478)
T 3dk9_A           18 VASYDYLVIGGGSGGLASARRAAEL----GARAAVVESHK   53 (478)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHT----TCCEEEEESSC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhC----CCeEEEEecCC
Confidence            3469999999999999999999996    99999999764

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.42  E-value=3.5e-07  Score=89.77  Aligned_cols=68  Identities=25%  Similarity=0.338  Sum_probs=45.8

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGA  126 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl  126 (515)
                      ..+||+|||||||||++|+.|++..  .|++|+||||.+.++..-+.   .........+......+++++|+
T Consensus        64 ~~~DV~IIGaGPAGlsAA~~la~~r--~G~~V~viEk~~~~GG~~~~---~~~~~~~~~l~~~~~~~~~e~Gv  131 (326)
T 3fpz_A           64 AVSDVIIVGAGSSGLSAAYVIAKNR--PDLKVCIIESSVAPGGGSWL---GGQLFSAMVMRKPAHLFLQELEI  131 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHC--TTSCEEEECSSSSCCTTTTC---CSTTCCCEEEETTTHHHHHHTTC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhC--CCCeEEEEECCCCCCceEEe---CCccCCHHHHHHHHHHHHHHcCC
Confidence            4589999999999999999997410  39999999999887533221   11112233455555566666654

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.41  E-value=3.9e-07  Score=95.49  Aligned_cols=40  Identities=33%  Similarity=0.469  Sum_probs=35.6

Q ss_pred             CCCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      .++..+||+|||||++|+++|+.|++.    |++|+|||++..+
T Consensus        39 ~~~~~~dVvIIGgG~aGl~aA~~l~~~----G~~V~liE~~~~~   78 (523)
T 1mo9_A           39 NDPREYDAIFIGGGAAGRFGSAYLRAM----GGRQLIVDRWPFL   78 (523)
T ss_dssp             TCCSCBSEEEECCSHHHHHHHHHHHHT----TCCEEEEESSSSS
T ss_pred             CCCCcCCEEEECCCHHHHHHHHHHHHC----CCCEEEEeCCCCC
Confidence            345679999999999999999999996    8999999998754

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.41  E-value=3.7e-07  Score=94.61  Aligned_cols=36  Identities=31%  Similarity=0.485  Sum_probs=32.6

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      +.++||+|||||++|+++|+.|++.    |++|+|||++.
T Consensus         9 ~~~~dVvVIGgG~aGl~aA~~l~~~----g~~V~liE~~~   44 (479)
T 2hqm_A            9 TKHYDYLVIGGGSGGVASARRAASY----GAKTLLVEAKA   44 (479)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHT----SCCEEEEESSC
T ss_pred             cccCCEEEEcCCHHHHHHHHHHHHC----CCcEEEEeCCC
Confidence            3469999999999999999999996    99999999974

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.40  E-value=1.2e-06  Score=90.42  Aligned_cols=100  Identities=20%  Similarity=0.283  Sum_probs=78.0

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      .-+|+|||||++|+-+|..|++.    |.+|+|+|+.+.+.          ..                           
T Consensus       169 ~~~vvViGgG~~g~e~A~~l~~~----g~~Vtlv~~~~~~l----------~~---------------------------  207 (464)
T 2eq6_A          169 PKRLLVIGGGAVGLELGQVYRRL----GAEVTLIEYMPEIL----------PQ---------------------------  207 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSSS----------TT---------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC----CCeEEEEEcCCccc----------cc---------------------------
Confidence            35899999999999999999996    89999999987541          00                           


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                                                        ...++...|.+.+++.| ++++++++|++++.              
T Consensus       208 ----------------------------------~~~~~~~~l~~~l~~~g-V~i~~~~~v~~i~~--------------  238 (464)
T 2eq6_A          208 ----------------------------------GDPETAALLRRALEKEG-IRVRTKTKAVGYEK--------------  238 (464)
T ss_dssp             ----------------------------------SCHHHHHHHHHHHHHTT-CEEECSEEEEEEEE--------------
T ss_pred             ----------------------------------cCHHHHHHHHHHHHhcC-CEEEcCCEEEEEEE--------------
Confidence                                              01234556777777777 99999999999975              


Q ss_pred             cccccccCCeeEEEcC-C--Cc--EEEeeEEEEecCCCchh
Q 010200          215 ATTLFTKGHLAKLDLS-D--GT--SLYAKLVVGADGGKSRV  250 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~-~--g~--~~~ad~vV~AdG~~S~v  250 (515)
                            .+..+.+.+. +  |+  ++.+|.||.|+|..+..
T Consensus       239 ------~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~  273 (464)
T 2eq6_A          239 ------KKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRT  273 (464)
T ss_dssp             ------ETTEEEEEEEETTCCSCEEEEESEEEECSCEEESC
T ss_pred             ------eCCEEEEEEeecCCCceeEEEcCEEEECCCcccCC
Confidence                  2344667665 5  76  89999999999987655

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=98.39  E-value=1.7e-06  Score=85.08  Aligned_cols=115  Identities=13%  Similarity=0.144  Sum_probs=67.7

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCC---CCC--CCCcEEEeC-HhH--HHHHHHcCCc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKK---EDP--PDPRVSTVT-PAT--ISFFKEIGAW  127 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~---~~~--~~~~~~~l~-~~~--~~~l~~lgl~  127 (515)
                      +||+|||||+||+.+|+.|++.    |++|+|+|+++..........   +-.  +..+|.... ..+  .+-+..+|- 
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~----G~~V~liE~~~~~~tp~h~~d~i~eL~CnpSigG~~~~~akGlL~~EIdaLGg-   76 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRL----GVPVRLFEMRPKRMTPAHGTDRFAEIVCSNSLGGEGETNAKGLLQAEMRRAGS-   76 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT----TCCEEEECCTTTSCCSSCCSSCTTCCCSCCEEEECSTTCHHHHHHHHHHHHTC-
T ss_pred             CCEEEECchHHHHHHHHHHHHC----CCcEEEEeccCCcCCccccCCCccccccCcCCCccccccchhHHHHHHHHcCC-
Confidence            6899999999999999999996    999999999885443321111   111  111121111 111  222233321 


Q ss_pred             hhhhhhhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEE
Q 010200          128 QYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSM  198 (515)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i  198 (515)
                       .+... . ....+             +      ......++|..+...+.+.++..++++++.+ +|+++
T Consensus        77 -~m~~~-a-D~~~i-------------p------Ag~al~vDR~~f~~~~~~~le~~pni~l~q~-eV~~l  124 (443)
T 3g5s_A           77 -LVMEA-A-DLARV-------------P------AGGALAVDREEFSGYITERLTGHPLLEVVRE-EVREI  124 (443)
T ss_dssp             -HHHHH-H-HHSEE-------------C------CTTEEEECHHHHHHHHHHHHHTCTTEEEECS-CCCSC
T ss_pred             -hHhhh-h-hhcCC-------------C------CCccccCCcHHHHHHHHHHHHcCCCeEEEhh-hhhhh
Confidence             11110 0 00111             1      0112469999999999999999988888854 66655

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.38  E-value=3.1e-07  Score=99.53  Aligned_cols=41  Identities=27%  Similarity=0.415  Sum_probs=36.0

Q ss_pred             CCCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      +...++||+||||||+||++|+.|++.    |++|+|||+.+..+
T Consensus       387 ~~~~~~~VvIIGgG~AGl~aA~~La~~----G~~V~liE~~~~~G  427 (690)
T 3k30_A          387 AKESDARVLVVGAGPSGLEAARALGVR----GYDVVLAEAGRDLG  427 (690)
T ss_dssp             CCSSCCEEEEECCSHHHHHHHHHHHHH----TCEEEEECSSSSSC
T ss_pred             cccccceEEEECCCHHHHHHHHHHHHC----CCeEEEEecCCCCC
Confidence            344578999999999999999999996    99999999987663

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.37  E-value=8.7e-07  Score=91.01  Aligned_cols=101  Identities=19%  Similarity=0.233  Sum_probs=77.7

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      .-+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.          .     .+.                    
T Consensus       167 ~~~vvViGgG~~g~e~A~~l~~~----g~~Vtlv~~~~~~l----------~-----~~~--------------------  207 (450)
T 1ges_A          167 PERVAVVGAGYIGVELGGVINGL----GAKTHLFEMFDAPL----------P-----SFD--------------------  207 (450)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSSS----------T-----TSC--------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhc----CCEEEEEEeCCchh----------h-----hhh--------------------
Confidence            35899999999999999999996    89999999887540          0     000                    


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                                                          ..+.+.|.+.+++.| ++++++++|++++.              
T Consensus       208 ------------------------------------~~~~~~l~~~l~~~G-v~i~~~~~v~~i~~--------------  236 (450)
T 1ges_A          208 ------------------------------------PMISETLVEVMNAEG-PQLHTNAIPKAVVK--------------  236 (450)
T ss_dssp             ------------------------------------HHHHHHHHHHHHHHS-CEEECSCCEEEEEE--------------
T ss_pred             ------------------------------------HHHHHHHHHHHHHCC-CEEEeCCEEEEEEE--------------
Confidence                                                013455666666777 99999999999975              


Q ss_pred             cccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200          215 ATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                           +.+..+.+.+.+|+++.+|.||.|+|..+..
T Consensus       237 -----~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~  267 (450)
T 1ges_A          237 -----NTDGSLTLELEDGRSETVDCLIWAIGREPAN  267 (450)
T ss_dssp             -----CTTSCEEEEETTSCEEEESEEEECSCEEESC
T ss_pred             -----eCCcEEEEEECCCcEEEcCEEEECCCCCcCC
Confidence                 0112367888899899999999999987665

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.37  E-value=9.1e-08  Score=99.54  Aligned_cols=41  Identities=24%  Similarity=0.400  Sum_probs=34.6

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ++..+||+|||||+||+++|..|++.+  .|.+|+|||+.+.+
T Consensus         8 ~~~~~~vvIIGgG~AGl~aA~~L~~~~--~g~~V~lie~~~~~   48 (493)
T 1m6i_A            8 APSHVPFLLIGGGTAAFAAARSIRARD--PGARVLIVSEDPEL   48 (493)
T ss_dssp             CCSEEEEEEESCSHHHHHHHHHHHHHS--TTCEEEEEESSSSC
T ss_pred             CCCcCCEEEECChHHHHHHHHHHHhcC--CCCeEEEEeCCCCC
Confidence            345689999999999999999887743  38999999998765

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.36  E-value=2.5e-07  Score=93.06  Aligned_cols=37  Identities=16%  Similarity=0.397  Sum_probs=31.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      .++||+|||||++|+++|+.|++.+  ...+|+|+|++.
T Consensus         3 ~~~dvvIIG~G~aGl~aA~~l~~~g--~~~~V~lie~~~   39 (384)
T 2v3a_A            3 ERAPLVIIGTGLAGYNLAREWRKLD--GETPLLMITADD   39 (384)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHTTC--SSSCEEEECSSC
T ss_pred             CCCcEEEECChHHHHHHHHHHHhhC--CCCCEEEEECCC
Confidence            3589999999999999999999972  126799999876

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.36  E-value=1.8e-06  Score=89.60  Aligned_cols=35  Identities=34%  Similarity=0.441  Sum_probs=32.1

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN   91 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~   91 (515)
                      ..+|||+||||||+|+++|+.|++.    |++|+|+||.
T Consensus         7 ~~~~DvvVIGgG~aGl~aA~~la~~----G~~V~liEk~   41 (483)
T 3dgh_A            7 SYDYDLIVIGGGSAGLACAKEAVLN----GARVACLDFV   41 (483)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHT----TCCEEEECCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHC----CCEEEEEEec
Confidence            3579999999999999999999996    9999999964

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.36  E-value=7.2e-07  Score=92.94  Aligned_cols=36  Identities=25%  Similarity=0.387  Sum_probs=32.1

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCC-CcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTK-HLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~-G~~V~v~E~~~   92 (515)
                      ++||+|||||++|+++|+.|++..  + |++|+|||+..
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~--~~G~~V~liE~~~   38 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSH--PETTQVTVIDCDG   38 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHC--TTTEEEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCC--CCcCEEEEEeCCC
Confidence            489999999999999999999941  1 89999999987

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.35  E-value=4.7e-07  Score=93.40  Aligned_cols=34  Identities=29%  Similarity=0.462  Sum_probs=32.3

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ++||+||||||+|+++|..|++.    |++|+|+|+.+
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~----g~~V~lie~~~   39 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQL----GLKVLAVEAGE   39 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT----TCCEEEEESSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC----CCeEEEEeCCC
Confidence            58999999999999999999996    89999999987

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.34  E-value=1.3e-06  Score=90.11  Aligned_cols=35  Identities=34%  Similarity=0.602  Sum_probs=32.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      +++||+|||||++|+++|..|++.    |++|+|||+..
T Consensus         3 ~~~dVvIIGgG~aGl~aA~~l~~~----g~~V~liE~~~   37 (463)
T 2r9z_A            3 QHFDLIAIGGGSGGLAVAEKAAAF----GKRVALIESKA   37 (463)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHT----TCCEEEEESSC
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhC----CCcEEEEcCCC
Confidence            469999999999999999999996    99999999973

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=98.33  E-value=8.4e-07  Score=91.74  Aligned_cols=40  Identities=28%  Similarity=0.437  Sum_probs=34.4

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPALGKS   97 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~~~~~   97 (515)
                      ..+||+|||||++||++|+.|++.    |+ +|+|+|+.+.++..
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~----g~~~v~~~e~~~~~gg~   43 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEA----GITDLLILEATDHIGGR   43 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHT----TCCCEEEECSSSSSBTT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhc----CCCceEEEeCCCCCCCc
Confidence            458999999999999999999996    88 89999999877543

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.33  E-value=1.5e-06  Score=89.35  Aligned_cols=35  Identities=29%  Similarity=0.451  Sum_probs=32.4

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      .++||+|||||++|+++|+.|++.    |++|+|||++.
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~----g~~V~liE~~~   37 (450)
T 1ges_A            3 KHYDYIAIGGGSGGIASINRAAMY----GQKCALIEAKE   37 (450)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTT----TCCEEEEESSC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhC----CCeEEEEcCCC
Confidence            468999999999999999999996    99999999974

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.32  E-value=9.5e-07  Score=91.81  Aligned_cols=36  Identities=39%  Similarity=0.558  Sum_probs=32.7

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ..+||+|||||++|+++|+.|++    . ++|+|||+.+.+
T Consensus       107 ~~~dVvIIGgG~aGl~aA~~L~~----~-~~V~vie~~~~~  142 (493)
T 1y56_A          107 VVVDVAIIGGGPAGIGAALELQQ----Y-LTVALIEERGWL  142 (493)
T ss_dssp             EEESCCEECCSHHHHHHHHHHTT----T-CCEEEECTTSSS
T ss_pred             ccCCEEEECccHHHHHHHHHHHh----c-CCEEEEeCCCCC
Confidence            35799999999999999999999    5 899999999866

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.31  E-value=1.6e-06  Score=87.54  Aligned_cols=35  Identities=31%  Similarity=0.464  Sum_probs=30.6

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      +|||||||+||+++|..|++.+  .+.+|+|||+++.
T Consensus         4 kVvIIG~G~AG~~aA~~L~~~~--~~~~Vtlie~~~~   38 (401)
T 3vrd_B            4 KVVVVGGGTGGATAAKYIKLAD--PSIEVTLIEPNET   38 (401)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHC--TTSEEEEECSCSS
T ss_pred             EEEEECCcHHHHHHHHHHHhcC--cCCeEEEEeCCCC
Confidence            6999999999999999998863  3579999998874

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.31  E-value=1.4e-07  Score=98.11  Aligned_cols=34  Identities=26%  Similarity=0.412  Sum_probs=32.1

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ++||+||||||+|+++|+.|++.    |++|+|+|++.
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~~----G~~V~liE~~~   41 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKKH----TDKVVLIEGGA   41 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTT----CSCEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC----CCcEEEEeCCC
Confidence            58999999999999999999996    99999999975

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.31  E-value=2e-06  Score=89.35  Aligned_cols=33  Identities=36%  Similarity=0.545  Sum_probs=30.7

Q ss_pred             CCccEEEECCCHHHHHHHHHHhc-CCCCCCcEEEEEcC
Q 010200           54 DQYDVAVVGGGMVGMALACSLAS-MPLTKHLSVAIIDS   90 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~-~~~~~G~~V~v~E~   90 (515)
                      .++||+||||||+|+++|+.|++ .    |++|+|+|+
T Consensus         2 ~~~dvvVIGgG~aGl~aA~~la~~~----G~~V~liE~   35 (490)
T 1fec_A            2 RAYDLVVIGAGSGGLEAGWNAASLH----KKRVAVIDL   35 (490)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHH----CCCEEEEES
T ss_pred             ccccEEEECCCHHHHHHHHHHHHHc----CCEEEEEec
Confidence            36899999999999999999999 7    899999994

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.30  E-value=8.4e-07  Score=93.93  Aligned_cols=37  Identities=11%  Similarity=0.270  Sum_probs=33.0

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      .||+|||||+||+++|..|++.+  .|++|+|||+.+.+
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~--~~~~V~lie~~~~~   38 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLS--ETAEIIMFERGEYV   38 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHC--SSSEEEEECSSSCS
T ss_pred             CcEEEECCCHHHHHHHHHHHhhC--cCCCEEEEECCCCc
Confidence            48999999999999999999853  37999999999865

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.29  E-value=2e-06  Score=88.58  Aligned_cols=100  Identities=22%  Similarity=0.219  Sum_probs=77.2

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      .-+|+|||||.+|+-+|..|++.    |.+|+|+|+.+.+.          .     .+.                    
T Consensus       166 ~~~vvVvGgG~~g~e~A~~l~~~----G~~Vtlv~~~~~~l----------~-----~~~--------------------  206 (463)
T 2r9z_A          166 PKRVAIIGAGYIGIELAGLLRSF----GSEVTVVALEDRLL----------F-----QFD--------------------  206 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSSS----------T-----TSC--------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhc----CCEEEEEEcCCccc----------c-----ccC--------------------
Confidence            35799999999999999999996    89999999887540          0     000                    


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                                                          ..+...+.+.+++.| ++++++++|++++.              
T Consensus       207 ------------------------------------~~~~~~l~~~l~~~g-v~i~~~~~v~~i~~--------------  235 (463)
T 2r9z_A          207 ------------------------------------PLLSATLAENMHAQG-IETHLEFAVAALER--------------  235 (463)
T ss_dssp             ------------------------------------HHHHHHHHHHHHHTT-CEEESSCCEEEEEE--------------
T ss_pred             ------------------------------------HHHHHHHHHHHHHCC-CEEEeCCEEEEEEE--------------
Confidence                                                012244566667777 99999999999975              


Q ss_pred             cccccccCCeeEEEcCCCc-EEEeeEEEEecCCCchh
Q 010200          215 ATTLFTKGHLAKLDLSDGT-SLYAKLVVGADGGKSRV  250 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~-~~~ad~vV~AdG~~S~v  250 (515)
                            ..+.+.+.+.+|+ ++.+|.||.|+|.....
T Consensus       236 ------~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~  266 (463)
T 2r9z_A          236 ------DAQGTTLVAQDGTRLEGFDSVIWAVGRAPNT  266 (463)
T ss_dssp             ------ETTEEEEEETTCCEEEEESEEEECSCEEESC
T ss_pred             ------eCCeEEEEEeCCcEEEEcCEEEECCCCCcCC
Confidence                  2234788888998 89999999999987654

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.25  E-value=5.2e-07  Score=94.01  Aligned_cols=34  Identities=38%  Similarity=0.589  Sum_probs=32.0

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ++||+|||||++|+++|+.|++.    |++|+|||+..
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~----g~~V~liE~~~   35 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARH----NAKVALVEKSR   35 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHT----TCCEEEEESSS
T ss_pred             ccCEEEECCCHHHHHHHHHHHHC----CCcEEEEeCCC
Confidence            48999999999999999999996    99999999985

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.24  E-value=7.5e-06  Score=83.92  Aligned_cols=101  Identities=23%  Similarity=0.248  Sum_probs=76.6

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      ...+|+|||||++|+.+|..|++.    |.+|+|+|+.+.+.          ..                          
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~~----g~~Vtlv~~~~~~l----------~~--------------------------  187 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAKA----GKKVTVIDILDRPL----------GV--------------------------  187 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSSSTT----------TT--------------------------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC----CCeEEEEecCcccc----------cc--------------------------
Confidence            457899999999999999999996    89999999987541          00                          


Q ss_pred             hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (515)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~  213 (515)
                         .                +               ..++...+.+.+++.| ++++++++|++++.             
T Consensus       188 ---~----------------~---------------~~~~~~~l~~~l~~~g-v~i~~~~~v~~i~~-------------  219 (447)
T 1nhp_A          188 ---Y----------------L---------------DKEFTDVLTEEMEANN-ITIATGETVERYEG-------------  219 (447)
T ss_dssp             ---T----------------C---------------CHHHHHHHHHHHHTTT-EEEEESCCEEEEEC-------------
T ss_pred             ---c----------------C---------------CHHHHHHHHHHHHhCC-CEEEcCCEEEEEEc-------------
Confidence               0                0               0245567778888887 99999999999975             


Q ss_pred             CcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200          214 SATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                             ++....+.+ ++.++.+|.||.|+|.....
T Consensus       220 -------~~~v~~v~~-~~~~i~~d~vi~a~G~~p~~  248 (447)
T 1nhp_A          220 -------DGRVQKVVT-DKNAYDADLVVVAVGVRPNT  248 (447)
T ss_dssp             -------SSBCCEEEE-SSCEEECSEEEECSCEEESC
T ss_pred             -------cCcEEEEEE-CCCEEECCEEEECcCCCCCh
Confidence                   212224444 45689999999999986543

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.23  E-value=1.2e-06  Score=91.11  Aligned_cols=33  Identities=27%  Similarity=0.512  Sum_probs=30.9

Q ss_pred             CCccEEEECCCHHHHHHHHHHhc-CCCCCCcEEEEEcC
Q 010200           54 DQYDVAVVGGGMVGMALACSLAS-MPLTKHLSVAIIDS   90 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~-~~~~~G~~V~v~E~   90 (515)
                      .++||+||||||+|+++|+.|++ .    |++|+|||+
T Consensus         6 ~~~dvvVIGgG~aGl~aA~~la~~~----G~~V~liE~   39 (495)
T 2wpf_A            6 KAFDLVVIGAGSGGLEAGWNAATLY----GKRVAVVDV   39 (495)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHH----CCCEEEEES
T ss_pred             cccCEEEECCChhHHHHHHHHHHhc----CCeEEEEec
Confidence            46999999999999999999999 7    899999994

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.18  E-value=2.5e-06  Score=87.82  Aligned_cols=34  Identities=18%  Similarity=0.376  Sum_probs=31.4

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN   91 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~   91 (515)
                      .++||+||||||+|+++|+.|++.    |++|+|+|+.
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~----g~~V~lie~~   37 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQL----GIPTVLVEGQ   37 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHH----TCCEEEECSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC----CCEEEEEccC
Confidence            358999999999999999999996    8999999994

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.16  E-value=8.5e-06  Score=82.50  Aligned_cols=108  Identities=20%  Similarity=0.319  Sum_probs=81.9

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      ..+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.                   +..            +    
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~----g~~Vtvv~~~~~~l-------------------~~~------------~----  183 (410)
T 3ef6_A          143 ATRLLIVGGGLIGCEVATTARKL----GLSVTILEAGDELL-------------------VRV------------L----  183 (410)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSSS-------------------HHH------------H----
T ss_pred             CCeEEEECCCHHHHHHHHHHHhC----CCeEEEEecCCccc-------------------hhh------------c----
Confidence            45799999999999999999996    89999999988550                   000            0    


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                                                         ...+...+.+.+++.| ++++++++|++++.              
T Consensus       184 -----------------------------------~~~~~~~l~~~l~~~G-V~i~~~~~v~~i~~--------------  213 (410)
T 3ef6_A          184 -----------------------------------GRRIGAWLRGLLTELG-VQVELGTGVVGFSG--------------  213 (410)
T ss_dssp             -----------------------------------CHHHHHHHHHHHHHHT-CEEECSCCEEEEEC--------------
T ss_pred             -----------------------------------CHHHHHHHHHHHHHCC-CEEEeCCEEEEEec--------------
Confidence                                               0234456667777777 99999999999975              


Q ss_pred             cccccccCCeeEEEcCCCcEEEeeEEEEecCCCch--hhhhcCCc
Q 010200          215 ATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR--VRELAGFK  257 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~--vr~~l~~~  257 (515)
                            ++....+.+++|+++.||+||.|.|....  +-+.+++.
T Consensus       214 ------~~~~~~v~~~dg~~i~aD~Vv~a~G~~p~~~l~~~~gl~  252 (410)
T 3ef6_A          214 ------EGQLEQVMASDGRSFVADSALICVGAEPADQLARQAGLA  252 (410)
T ss_dssp             ------SSSCCEEEETTSCEEECSEEEECSCEEECCHHHHHTTCC
T ss_pred             ------cCcEEEEEECCCCEEEcCEEEEeeCCeecHHHHHhCCCc
Confidence                  22445788889999999999999998654  33344443

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.13  E-value=1.1e-05  Score=81.80  Aligned_cols=101  Identities=16%  Similarity=0.253  Sum_probs=78.9

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      ..+|+|||||..|+-+|..|++.    |.+|+++|+.+.+...                                     
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~----g~~Vtvv~~~~~~l~~-------------------------------------  190 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKF----GVNVTLLEALPRVLAR-------------------------------------  190 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSSSTTTT-------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhc----CCeEEEEecCCchhhh-------------------------------------
Confidence            45799999999999999999996    8999999998754100                                     


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                                                       .....+...+.+.+++.| ++++++++|++++.              
T Consensus       191 ---------------------------------~~~~~~~~~l~~~l~~~G-V~i~~~~~v~~i~~--------------  222 (415)
T 3lxd_A          191 ---------------------------------VAGEALSEFYQAEHRAHG-VDLRTGAAMDCIEG--------------  222 (415)
T ss_dssp             ---------------------------------TSCHHHHHHHHHHHHHTT-CEEEETCCEEEEEE--------------
T ss_pred             ---------------------------------hcCHHHHHHHHHHHHhCC-CEEEECCEEEEEEe--------------
Confidence                                             001245566777777787 99999999999975              


Q ss_pred             cccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200          215 ATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR  249 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~  249 (515)
                           +++....|.+.+|+++.||.||.|.|....
T Consensus       223 -----~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~  252 (415)
T 3lxd_A          223 -----DGTKVTGVRMQDGSVIPADIVIVGIGIVPC  252 (415)
T ss_dssp             -----SSSBEEEEEESSSCEEECSEEEECSCCEES
T ss_pred             -----cCCcEEEEEeCCCCEEEcCEEEECCCCccC
Confidence                 112334688899999999999999998664

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.12  E-value=8.2e-06  Score=86.90  Aligned_cols=35  Identities=31%  Similarity=0.474  Sum_probs=32.1

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN   91 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~   91 (515)
                      ...+||+||||||||+++|..|++.    |++|+|||+.
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~----g~~v~liE~~  139 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKY----GAKTAVLDYV  139 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHT----TCCEEEECCC
T ss_pred             cccccEEEECCCccHHHHHHHHHhC----CCeEEEEecc
Confidence            3569999999999999999999996    9999999984

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.12  E-value=6.3e-06  Score=84.67  Aligned_cols=100  Identities=13%  Similarity=0.219  Sum_probs=76.1

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      ..+|+|||||++|+-+|..|++.    |.+|+|+|+.+.+.          +                            
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~----g~~Vtlv~~~~~~l----------~----------------------------  207 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYANF----GTKVTILEGAGEIL----------S----------------------------  207 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSSSSS----------T----------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCcEEEEEcCCccc----------c----------------------------
Confidence            46899999999999999999996    89999999987540          0                            


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                        .                               ....+...+.+.+++.| ++++++++|++++.              
T Consensus       208 --~-------------------------------~~~~~~~~l~~~l~~~g-v~i~~~~~v~~i~~--------------  239 (455)
T 1ebd_A          208 --G-------------------------------FEKQMAAIIKKRLKKKG-VEVVTNALAKGAEE--------------  239 (455)
T ss_dssp             --T-------------------------------SCHHHHHHHHHHHHHTT-CEEEESEEEEEEEE--------------
T ss_pred             --c-------------------------------cCHHHHHHHHHHHHHCC-CEEEeCCEEEEEEE--------------
Confidence              0                               00134456667777777 99999999999975              


Q ss_pred             cccccccCCeeEEEcC---CCcEEEeeEEEEecCCCchh
Q 010200          215 ATTLFTKGHLAKLDLS---DGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~---~g~~~~ad~vV~AdG~~S~v  250 (515)
                            +++.+.+.+.   +++++.+|.||.|+|.....
T Consensus       240 ------~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~  272 (455)
T 1ebd_A          240 ------REDGVTVTYEANGETKTIDADYVLVTVGRRPNT  272 (455)
T ss_dssp             ------ETTEEEEEEEETTEEEEEEESEEEECSCEEESC
T ss_pred             ------eCCeEEEEEEeCCceeEEEcCEEEECcCCCccc
Confidence                  2234566554   45679999999999987543

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.12  E-value=1.8e-06  Score=88.69  Aligned_cols=42  Identities=31%  Similarity=0.379  Sum_probs=37.5

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCC
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS   97 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~   97 (515)
                      ++.++||||||||++||++|+.|++.    |++|+|+|+++.++..
T Consensus         8 ~~~~~dvvVIGaG~~GL~aA~~La~~----G~~V~vlE~~~~~GG~   49 (453)
T 2bcg_G            8 IDTDYDVIVLGTGITECILSGLLSVD----GKKVLHIDKQDHYGGE   49 (453)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSSCGG
T ss_pred             ccccCCEEEECcCHHHHHHHHHHHHC----CCeEEEEeCCCCCCcc
Confidence            34578999999999999999999996    9999999999988643

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.12  E-value=8.3e-06  Score=84.38  Aligned_cols=102  Identities=14%  Similarity=0.179  Sum_probs=76.4

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      .-+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.          .     .+.                    
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~----g~~Vtlv~~~~~~l----------~-----~~d--------------------  225 (479)
T 2hqm_A          185 PKKVVVVGAGYIGIELAGVFHGL----GSETHLVIRGETVL----------R-----KFD--------------------  225 (479)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHT----TCEEEEECSSSSSC----------T-----TSC--------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCceEEEEeCCccc----------c-----ccC--------------------
Confidence            35799999999999999999996    89999999987541          0     000                    


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                                                          ..+...+.+.+++.| ++++++++|++++..             
T Consensus       226 ------------------------------------~~~~~~l~~~l~~~G-v~i~~~~~v~~i~~~-------------  255 (479)
T 2hqm_A          226 ------------------------------------ECIQNTITDHYVKEG-INVHKLSKIVKVEKN-------------  255 (479)
T ss_dssp             ------------------------------------HHHHHHHHHHHHHHT-CEEECSCCEEEEEEC-------------
T ss_pred             ------------------------------------HHHHHHHHHHHHhCC-eEEEeCCEEEEEEEc-------------
Confidence                                                112235556666667 999999999999750             


Q ss_pred             cccccccCCeeEEEcCCC-cEEEeeEEEEecCCCchh
Q 010200          215 ATTLFTKGHLAKLDLSDG-TSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g-~~~~ad~vV~AdG~~S~v  250 (515)
                           +++..+.+.+++| +++.+|.||.|.|.....
T Consensus       256 -----~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~  287 (479)
T 2hqm_A          256 -----VETDKLKIHMNDSKSIDDVDELIWTIGRKSHL  287 (479)
T ss_dssp             -----C-CCCEEEEETTSCEEEEESEEEECSCEEECC
T ss_pred             -----CCCcEEEEEECCCcEEEEcCEEEECCCCCCcc
Confidence                 0112367888888 789999999999986654

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.10  E-value=1.5e-05  Score=82.86  Aligned_cols=101  Identities=13%  Similarity=0.175  Sum_probs=77.8

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      .-+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.          .     .+                     
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~----g~~Vtlv~~~~~~l----------~-----~~---------------------  215 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRL----GIDSYIFARGNRIL----------R-----KF---------------------  215 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTT----TCEEEEECSSSSSC----------T-----TS---------------------
T ss_pred             CCeEEEECChHHHHHHHHHHHHc----CCeEEEEecCCccC----------c-----cc---------------------
Confidence            45899999999999999999996    89999999987540          0     00                     


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                                                         -..+...+.+.+++.| ++++++++|++++.              
T Consensus       216 -----------------------------------d~~~~~~l~~~l~~~g-v~i~~~~~v~~i~~--------------  245 (500)
T 1onf_A          216 -----------------------------------DESVINVLENDMKKNN-INIVTFADVVEIKK--------------  245 (500)
T ss_dssp             -----------------------------------CHHHHHHHHHHHHHTT-CEEECSCCEEEEEE--------------
T ss_pred             -----------------------------------chhhHHHHHHHHHhCC-CEEEECCEEEEEEE--------------
Confidence                                               0123345666777777 99999999999975              


Q ss_pred             cccccccCCeeEEEcCCCcE-EEeeEEEEecCCCchh
Q 010200          215 ATTLFTKGHLAKLDLSDGTS-LYAKLVVGADGGKSRV  250 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~-~~ad~vV~AdG~~S~v  250 (515)
                           +.+..+.+.+.+|++ +.+|.||.|.|.....
T Consensus       246 -----~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~  277 (500)
T 1onf_A          246 -----VSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDT  277 (500)
T ss_dssp             -----SSTTCEEEEETTSCEEEEESEEEECCCBCCTT
T ss_pred             -----cCCceEEEEECCCcEEEECCEEEECCCCCcCC
Confidence                 011236788888887 9999999999987654

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.10  E-value=1e-05  Score=84.17  Aligned_cols=100  Identities=15%  Similarity=0.210  Sum_probs=78.9

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      .-+|+|||||+.|+-+|..|++.    |.+|+++|+.+.+.          .     .+                     
T Consensus       182 ~~~vvViGgG~ig~E~A~~l~~~----g~~Vtlv~~~~~~l----------~-----~~---------------------  221 (499)
T 1xdi_A          182 PDHLIVVGSGVTGAEFVDAYTEL----GVPVTVVASQDHVL----------P-----YE---------------------  221 (499)
T ss_dssp             CSSEEEESCSHHHHHHHHHHHHT----TCCEEEECSSSSSS----------C-----CS---------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCeEEEEEcCCccc----------c-----cc---------------------
Confidence            35799999999999999999996    89999999987540          0     00                     


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                                                         -..+...+.+.+++.| ++|+++++|++++.              
T Consensus       222 -----------------------------------d~~~~~~l~~~l~~~G-V~i~~~~~V~~i~~--------------  251 (499)
T 1xdi_A          222 -----------------------------------DADAALVLEESFAERG-VRLFKNARAASVTR--------------  251 (499)
T ss_dssp             -----------------------------------SHHHHHHHHHHHHHTT-CEEETTCCEEEEEE--------------
T ss_pred             -----------------------------------CHHHHHHHHHHHHHCC-CEEEeCCEEEEEEE--------------
Confidence                                               0124456677777777 99999999999975              


Q ss_pred             cccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200          215 ATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                            ++..+.+.+.+|+++.+|.||.|.|.++..
T Consensus       252 ------~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~  281 (499)
T 1xdi_A          252 ------TGAGVLVTMTDGRTVEGSHALMTIGSVPNT  281 (499)
T ss_dssp             ------CSSSEEEEETTSCEEEESEEEECCCEEECC
T ss_pred             ------eCCEEEEEECCCcEEEcCEEEECCCCCcCC
Confidence                  233477888888899999999999987654

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.10  E-value=2.2e-05  Score=79.30  Aligned_cols=108  Identities=23%  Similarity=0.325  Sum_probs=81.1

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      .+|+|||||+.|+-+|..|++.    |.+|+++|+.+.+....                                     
T Consensus       143 ~~vvViGgG~~g~e~A~~l~~~----g~~Vtvv~~~~~~~~~~-------------------------------------  181 (404)
T 3fg2_P          143 KHVVVIGAGFIGLEFAATARAK----GLEVDVVELAPRVMARV-------------------------------------  181 (404)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSTTTTT-------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhC----CCEEEEEeCCCcchhhc-------------------------------------
Confidence            5799999999999999999996    89999999887541000                                     


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                                                       ....+...+.+.+++.| ++++++++|++++.               
T Consensus       182 ---------------------------------~~~~~~~~l~~~l~~~G-V~i~~~~~v~~i~~---------------  212 (404)
T 3fg2_P          182 ---------------------------------VTPEISSYFHDRHSGAG-IRMHYGVRATEIAA---------------  212 (404)
T ss_dssp             ---------------------------------SCHHHHHHHHHHHHHTT-CEEECSCCEEEEEE---------------
T ss_pred             ---------------------------------cCHHHHHHHHHHHHhCC-cEEEECCEEEEEEe---------------
Confidence                                             01235566777777887 99999999999975               


Q ss_pred             ccccccCCeeEEEcCCCcEEEeeEEEEecCCCch--hhhhcCCc
Q 010200          216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR--VRELAGFK  257 (515)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~--vr~~l~~~  257 (515)
                          +++....|.+++|+++.||.||.|.|....  +-+.+++.
T Consensus       213 ----~~~~v~~V~~~dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~  252 (404)
T 3fg2_P          213 ----EGDRVTGVVLSDGNTLPCDLVVVGVGVIPNVEIAAAAGLP  252 (404)
T ss_dssp             ----ETTEEEEEEETTSCEEECSEEEECCCEEECCHHHHHTTCC
T ss_pred             ----cCCcEEEEEeCCCCEEEcCEEEECcCCccCHHHHHhCCCC
Confidence                122334588899999999999999998554  33344443

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=98.09  E-value=6.2e-06  Score=92.44  Aligned_cols=36  Identities=31%  Similarity=0.404  Sum_probs=33.5

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      .+||+||||||||+++|+.|++.    |++|+|||+.+.+
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~----G~~V~lie~~~~~  163 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRS----GARVMLLDERAEA  163 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC----CCcEEEEeCCCCC
Confidence            58999999999999999999996    9999999998866

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.09  E-value=9e-06  Score=84.08  Aligned_cols=102  Identities=12%  Similarity=0.318  Sum_probs=76.9

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      .-+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.. .              +.                    
T Consensus       183 ~~~vvViGgG~~g~e~A~~l~~~----g~~Vtlv~~~~~~l~-~--------------~~--------------------  223 (478)
T 1v59_A          183 PKRLTIIGGGIIGLEMGSVYSRL----GSKVTVVEFQPQIGA-S--------------MD--------------------  223 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSSSS-S--------------SC--------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHc----CCEEEEEEeCCcccc-c--------------cC--------------------
Confidence            45899999999999999999996    899999999886510 0              00                    


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                                                          ..+...+.+.+++.| ++++++++|++++.         +    
T Consensus       224 ------------------------------------~~~~~~l~~~l~~~g-v~i~~~~~v~~i~~---------~----  253 (478)
T 1v59_A          224 ------------------------------------GEVAKATQKFLKKQG-LDFKLSTKVISAKR---------N----  253 (478)
T ss_dssp             ------------------------------------HHHHHHHHHHHHHTT-CEEECSEEEEEEEE---------E----
T ss_pred             ------------------------------------HHHHHHHHHHHHHCC-CEEEeCCEEEEEEE---------e----
Confidence                                                345566777777787 99999999999964         0    


Q ss_pred             cccccccCCeeEEEcC-----CCcEEEeeEEEEecCCCchh
Q 010200          215 ATTLFTKGHLAKLDLS-----DGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~-----~g~~~~ad~vV~AdG~~S~v  250 (515)
                           +++..+.+.+.     +++++.+|.||.|.|.....
T Consensus       254 -----~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~  289 (478)
T 1v59_A          254 -----DDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYI  289 (478)
T ss_dssp             -----TTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECC
T ss_pred             -----cCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCC
Confidence                 01233556554     34579999999999987654

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.09  E-value=9e-06  Score=85.08  Aligned_cols=100  Identities=16%  Similarity=0.174  Sum_probs=78.2

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      -+|+|||||..|+-+|..|++.    |.+|+|+|+.+.+.          .     .+                      
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~----G~~Vtlv~~~~~~l----------~-----~~----------------------  253 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNAT----GRRTVMLVRTEPLK----------L-----IK----------------------  253 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSCTTT----------T-----CC----------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHc----CCeEEEEEecCccc----------c-----cc----------------------
Confidence            6899999999999999999996    89999999987540          0     00                      


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                                                        ...+...|.+.+++.| ++++++++|++++..              
T Consensus       254 ----------------------------------~~~~~~~l~~~l~~~G-V~i~~~~~V~~i~~~--------------  284 (523)
T 1mo9_A          254 ----------------------------------DNETRAYVLDRMKEQG-MEIISGSNVTRIEED--------------  284 (523)
T ss_dssp             ----------------------------------SHHHHHHHHHHHHHTT-CEEESSCEEEEEEEC--------------
T ss_pred             ----------------------------------cHHHHHHHHHHHHhCC-cEEEECCEEEEEEEc--------------
Confidence                                              0133466777777888 999999999999750              


Q ss_pred             ccccccCCe---eEEEcCCCc-EEEeeEEEEecCCCchh
Q 010200          216 TTLFTKGHL---AKLDLSDGT-SLYAKLVVGADGGKSRV  250 (515)
Q Consensus       216 ~~~~~~~~~---~~v~~~~g~-~~~ad~vV~AdG~~S~v  250 (515)
                           .+..   +.|.+.+|+ ++.+|.||.|.|.++..
T Consensus       285 -----~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~  318 (523)
T 1mo9_A          285 -----ANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRS  318 (523)
T ss_dssp             -----TTSBEEEEEEEETTEEEEEECSCEEECCCCEECC
T ss_pred             -----CCCceEEEEEEECCCcEEEEcCEEEECcCCccCC
Confidence                 1122   678888887 89999999999987764

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=98.08  E-value=6.7e-06  Score=85.60  Aligned_cols=73  Identities=19%  Similarity=0.227  Sum_probs=49.7

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCC-CC-CCCcEE---EeCHhHHHHHHHcCCc
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKE-DP-PDPRVS---TVTPATISFFKEIGAW  127 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~-~~-~~~~~~---~l~~~~~~~l~~lgl~  127 (515)
                      ...+||+|||||++||++|+.|++.    |++|+|||+.+.++.+...... +. ......   ...+...++++++|+.
T Consensus        11 ~~~~~v~iiG~G~~Gl~aA~~l~~~----g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~lgl~   86 (504)
T 1sez_A           11 SSAKRVAVIGAGVSGLAAAYKLKIH----GLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGDVTFLIDSLGLR   86 (504)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHTT----SCEEEEECSSSSSCSSCCEEEETTEEEESSCCCBCCCSHHHHHHHHHTTCG
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHC----CCcEEEEEeCCCCCCceeeeccCCeEEecCCcccccCcHHHHHHHHHcCCc
Confidence            3468999999999999999999996    9999999999987543210000 00 000000   1246778899999986


Q ss_pred             hh
Q 010200          128 QY  129 (515)
Q Consensus       128 ~~  129 (515)
                      +.
T Consensus        87 ~~   88 (504)
T 1sez_A           87 EK   88 (504)
T ss_dssp             GG
T ss_pred             cc
Confidence            54

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.07  E-value=7.3e-06  Score=83.73  Aligned_cols=36  Identities=19%  Similarity=0.353  Sum_probs=30.9

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      +||||||||||+++|..|++.+  ...+|+|+|+++..
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g--~~~~V~lie~~~~~   37 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLD--KESDIIIFEKDRDM   37 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHC--SSSCEEEEESSSCS
T ss_pred             eEEEECCCHHHHHHHHHHHhCC--CCCcEEEEeCCCCC
Confidence            6999999999999999999873  24689999998754

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.06  E-value=1.8e-05  Score=81.65  Aligned_cols=100  Identities=17%  Similarity=0.405  Sum_probs=75.1

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      ..+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.          +.     +                     
T Consensus       174 ~~~vvViGgG~~g~E~A~~l~~~----g~~Vtlv~~~~~~l----------~~-----~---------------------  213 (468)
T 2qae_A          174 PKTMVVIGGGVIGLELGSVWARL----GAEVTVVEFAPRCA----------PT-----L---------------------  213 (468)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSSS----------TT-----S---------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHh----CCEEEEEecCCccc----------cc-----C---------------------
Confidence            45899999999999999999996    89999999987541          00     0                     


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHH-hcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCM-QNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~-~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~  213 (515)
                                                         ..++...+.+.+ ++.| ++++++++|++++.             
T Consensus       214 -----------------------------------d~~~~~~l~~~l~~~~g-v~i~~~~~v~~i~~-------------  244 (468)
T 2qae_A          214 -----------------------------------DEDVTNALVGALAKNEK-MKFMTSTKVVGGTN-------------  244 (468)
T ss_dssp             -----------------------------------CHHHHHHHHHHHHHHTC-CEEECSCEEEEEEE-------------
T ss_pred             -----------------------------------CHHHHHHHHHHHhhcCC-cEEEeCCEEEEEEE-------------
Confidence                                               023445667777 7777 99999999999975             


Q ss_pred             CcccccccCCeeEEEcC--CC--cEEEeeEEEEecCCCchh
Q 010200          214 SATTLFTKGHLAKLDLS--DG--TSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       214 ~~~~~~~~~~~~~v~~~--~g--~~~~ad~vV~AdG~~S~v  250 (515)
                             +++.+.+.+.  +|  +++.+|.||.|.|..+..
T Consensus       245 -------~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~  278 (468)
T 2qae_A          245 -------NGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFT  278 (468)
T ss_dssp             -------CSSSEEEEEECC---EEEEEESEEEECSCEEECC
T ss_pred             -------cCCeEEEEEEcCCCceEEEECCEEEECCCcccCC
Confidence                   2233566654  66  579999999999987654

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.06  E-value=3.4e-06  Score=83.81  Aligned_cols=40  Identities=23%  Similarity=0.420  Sum_probs=35.6

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCC-CCCC
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN-PALG   95 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~-~~~~   95 (515)
                      +...+||+|||||++||++|+.|++.    |++|+|||+. ..++
T Consensus        41 ~~~~~~V~IIGAGiaGL~aA~~L~~~----G~~V~VlE~~~~~vG   81 (376)
T 2e1m_A           41 PGPPKRILIVGAGIAGLVAGDLLTRA----GHDVTILEANANRVG   81 (376)
T ss_dssp             CCSCCEEEEECCBHHHHHHHHHHHHT----SCEEEEECSCSSCCB
T ss_pred             CCCCceEEEECCCHHHHHHHHHHHHC----CCcEEEEeccccccC
Confidence            34568999999999999999999996    9999999999 7663

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.06  E-value=8.2e-06  Score=84.49  Aligned_cols=100  Identities=10%  Similarity=0.151  Sum_probs=77.2

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      .-+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.          .     .+                     
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~----G~~Vtlv~~~~~~l----------~-----~~---------------------  224 (482)
T 1ojt_A          185 PGKLLIIGGGIIGLEMGTVYSTL----GSRLDVVEMMDGLM----------Q-----GA---------------------  224 (482)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHH----TCEEEEECSSSSSS----------T-----TS---------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCeEEEEEECCccc----------c-----cc---------------------
Confidence            46899999999999999999996    89999999987541          0     00                     


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                                                         -.++...+.+.+++.| ++++++++|.+++.              
T Consensus       225 -----------------------------------~~~~~~~l~~~l~~~g-V~i~~~~~v~~i~~--------------  254 (482)
T 1ojt_A          225 -----------------------------------DRDLVKVWQKQNEYRF-DNIMVNTKTVAVEP--------------  254 (482)
T ss_dssp             -----------------------------------CHHHHHHHHHHHGGGE-EEEECSCEEEEEEE--------------
T ss_pred             -----------------------------------CHHHHHHHHHHHHhcC-CEEEECCEEEEEEE--------------
Confidence                                               0133455667777777 99999999999975              


Q ss_pred             cccccccCCeeEEEcCC----CcEEEeeEEEEecCCCchh
Q 010200          215 ATTLFTKGHLAKLDLSD----GTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~----g~~~~ad~vV~AdG~~S~v  250 (515)
                            ++..+.+.+.+    |+++.+|.||.|.|.....
T Consensus       255 ------~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~  288 (482)
T 1ojt_A          255 ------KEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNG  288 (482)
T ss_dssp             ------ETTEEEEEEESSSCCSSCEEESCEEECCCEEECG
T ss_pred             ------cCCeEEEEEeccCCCceEEEcCEEEECcCCCcCC
Confidence                  22346666666    6789999999999987654

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.05  E-value=2.8e-05  Score=80.30  Aligned_cols=101  Identities=12%  Similarity=0.198  Sum_probs=76.2

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      .-+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.          .  +  .                      
T Consensus       178 ~~~vvViGgG~~g~E~A~~l~~~----g~~Vtlv~~~~~~l----------~--~--~----------------------  217 (474)
T 1zmd_A          178 PEKMVVIGAGVIGVELGSVWQRL----GADVTAVEFLGHVG----------G--V--G----------------------  217 (474)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSSS----------C--S--S----------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHc----CCEEEEEeccCccC----------C--c--c----------------------
Confidence            35899999999999999999996    89999999987541          0  0  0                      


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                                         +               ..++...+.+.+++.| ++++++++|++++.              
T Consensus       218 -------------------~---------------~~~~~~~l~~~l~~~G-v~i~~~~~v~~i~~--------------  248 (474)
T 1zmd_A          218 -------------------I---------------DMEISKNFQRILQKQG-FKFKLNTKVTGATK--------------  248 (474)
T ss_dssp             -------------------C---------------CHHHHHHHHHHHHHTT-CEEECSEEEEEEEE--------------
T ss_pred             -------------------c---------------CHHHHHHHHHHHHHCC-CEEEeCceEEEEEE--------------
Confidence                               0               1234456777777777 99999999999975              


Q ss_pred             cccccccCCe-eEEEc-----CCCcEEEeeEEEEecCCCchh
Q 010200          215 ATTLFTKGHL-AKLDL-----SDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       215 ~~~~~~~~~~-~~v~~-----~~g~~~~ad~vV~AdG~~S~v  250 (515)
                            ++.. +.+.+     .+++++.+|.||.|.|.....
T Consensus       249 ------~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~  284 (474)
T 1zmd_A          249 ------KSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFT  284 (474)
T ss_dssp             ------CTTSCEEEEEEETTSCCCEEEEESEEEECSCEEECC
T ss_pred             ------cCCceEEEEEEecCCCCceEEEcCEEEECcCCCcCC
Confidence                  2222 55553     456689999999999986543

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.00  E-value=3.3e-05  Score=80.11  Aligned_cols=104  Identities=13%  Similarity=0.118  Sum_probs=78.4

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      .-+|+|||||+.|+-+|..|++.. .+|.+|+|+|+.+.+.          ..     +                     
T Consensus       187 ~~~vvViGgG~ig~E~A~~l~~~~-~~g~~Vtlv~~~~~~l----------~~-----~---------------------  229 (490)
T 1fec_A          187 PKRALCVGGGYISIEFAGIFNAYK-ARGGQVDLAYRGDMIL----------RG-----F---------------------  229 (490)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHS-CTTCEEEEEESSSSSS----------TT-----S---------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhc-cCcCeEEEEEcCCCcc----------cc-----c---------------------
Confidence            358999999999999999998830 0188999999987540          00     0                     


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                                                         -..+...|.+.+++.| ++|+++++|++++.              
T Consensus       230 -----------------------------------d~~~~~~l~~~l~~~G-V~i~~~~~v~~i~~--------------  259 (490)
T 1fec_A          230 -----------------------------------DSELRKQLTEQLRANG-INVRTHENPAKVTK--------------  259 (490)
T ss_dssp             -----------------------------------CHHHHHHHHHHHHHTT-EEEEETCCEEEEEE--------------
T ss_pred             -----------------------------------CHHHHHHHHHHHHhCC-CEEEeCCEEEEEEE--------------
Confidence                                               0134456777777777 99999999999975              


Q ss_pred             cccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200          215 ATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                           +.+..+.+.+.+|+++.+|.||.|.|.....
T Consensus       260 -----~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~  290 (490)
T 1fec_A          260 -----NADGTRHVVFESGAEADYDVVMLAIGRVPRS  290 (490)
T ss_dssp             -----CTTSCEEEEETTSCEEEESEEEECSCEEESC
T ss_pred             -----cCCCEEEEEECCCcEEEcCEEEEccCCCcCc
Confidence                 0113467888888889999999999987654

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=97.99  E-value=4.8e-06  Score=84.66  Aligned_cols=40  Identities=20%  Similarity=0.389  Sum_probs=35.9

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCC-cEEEEEcCCCCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPALGKS   97 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G-~~V~v~E~~~~~~~~   97 (515)
                      +++||+|||||++||++|+.|++.    | ++|+|||+.+.++.+
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~----g~~~v~v~E~~~~~GG~   45 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQA----GFHDYTILERTDHVGGK   45 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHT----TCCCEEEECSSSCSSTT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhC----CCCcEEEEECCCCCCCc
Confidence            468999999999999999999996    8 899999999887543

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.99  E-value=1.3e-05  Score=79.97  Aligned_cols=93  Identities=22%  Similarity=0.276  Sum_probs=73.2

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      .+|+|||||++|+-+|..|++.    |.+|+|+|+.+.+.          .      +.                     
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~----g~~Vtlv~~~~~~l----------~------~~---------------------  182 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEA----GYHVKLIHRGAMFL----------G------LD---------------------  182 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHT----TCEEEEECSSSCCT----------T------CC---------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHhC----CCEEEEEeCCCeec----------c------CC---------------------
Confidence            5799999999999999999996    89999999987541          0      00                     


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                                                         .++.+.+.+.+++.| ++++++++|++++.               
T Consensus       183 -----------------------------------~~~~~~l~~~l~~~g-V~i~~~~~v~~i~~---------------  211 (367)
T 1xhc_A          183 -----------------------------------EELSNMIKDMLEETG-VKFFLNSELLEANE---------------  211 (367)
T ss_dssp             -----------------------------------HHHHHHHHHHHHHTT-EEEECSCCEEEECS---------------
T ss_pred             -----------------------------------HHHHHHHHHHHHHCC-CEEEcCCEEEEEEe---------------
Confidence                                               134456677777777 99999999999842               


Q ss_pred             ccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200          216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                             .  .+.+++|+ +.+|.||.|.|.....
T Consensus       212 -------~--~v~~~~g~-i~~D~vi~a~G~~p~~  236 (367)
T 1xhc_A          212 -------E--GVLTNSGF-IEGKVKICAIGIVPNV  236 (367)
T ss_dssp             -------S--EEEETTEE-EECSCEEEECCEEECC
T ss_pred             -------e--EEEECCCE-EEcCEEEECcCCCcCH
Confidence                   2  35667887 9999999999976543

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.99  E-value=2.9e-05  Score=78.45  Aligned_cols=96  Identities=22%  Similarity=0.305  Sum_probs=74.6

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      ..+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+...                                     
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~~----g~~Vtlv~~~~~~l~~-------------------------------------  183 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATARTA----GVHVSLVETQPRLMSR-------------------------------------  183 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSSSSSTT-------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhC----CCEEEEEEeCCccccc-------------------------------------
Confidence            46899999999999999999996    8999999998754100                                     


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                        .                               ....+...+.+.+++.| ++++.+++|++++.              
T Consensus       184 --~-------------------------------~~~~~~~~l~~~l~~~G-V~i~~~~~v~~i~~--------------  215 (408)
T 2gqw_A          184 --A-------------------------------APATLADFVARYHAAQG-VDLRFERSVTGSVD--------------  215 (408)
T ss_dssp             --T-------------------------------SCHHHHHHHHHHHHHTT-CEEEESCCEEEEET--------------
T ss_pred             --c-------------------------------cCHHHHHHHHHHHHHcC-cEEEeCCEEEEEEC--------------
Confidence              0                               00134456667777777 99999999999842              


Q ss_pred             cccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200          215 ATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR  249 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~  249 (515)
                              +  .+.+.+|+++.+|.||.|.|....
T Consensus       216 --------~--~v~~~~g~~i~~D~vi~a~G~~p~  240 (408)
T 2gqw_A          216 --------G--VVLLDDGTRIAADMVVVGIGVLAN  240 (408)
T ss_dssp             --------T--EEEETTSCEEECSEEEECSCEEEC
T ss_pred             --------C--EEEECCCCEEEcCEEEECcCCCcc
Confidence                    2  566788889999999999997643

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.99  E-value=2.2e-05  Score=80.85  Aligned_cols=100  Identities=20%  Similarity=0.304  Sum_probs=74.6

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      .-+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.          +     .+.                    
T Consensus       171 ~~~vvViGgG~~g~E~A~~l~~~----g~~Vtlv~~~~~~l----------~-----~~~--------------------  211 (464)
T 2a8x_A          171 PKSIIIAGAGAIGMEFGYVLKNY----GVDVTIVEFLPRAL----------P-----NED--------------------  211 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSSS----------T-----TSC--------------------
T ss_pred             CCeEEEECCcHHHHHHHHHHHHc----CCeEEEEEcCCccc----------c-----ccC--------------------
Confidence            35899999999999999999996    89999999987540          0     000                    


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                                                          .++...+.+.+++.| ++++++++|++++.              
T Consensus       212 ------------------------------------~~~~~~l~~~l~~~g-v~i~~~~~v~~i~~--------------  240 (464)
T 2a8x_A          212 ------------------------------------ADVSKEIEKQFKKLG-VTILTATKVESIAD--------------  240 (464)
T ss_dssp             ------------------------------------HHHHHHHHHHHHHHT-CEEECSCEEEEEEE--------------
T ss_pred             ------------------------------------HHHHHHHHHHHHHcC-CEEEeCcEEEEEEE--------------
Confidence                                                123344566666667 99999999999975              


Q ss_pred             cccccccCCeeEEEcC-CC--cEEEeeEEEEecCCCchh
Q 010200          215 ATTLFTKGHLAKLDLS-DG--TSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~-~g--~~~~ad~vV~AdG~~S~v  250 (515)
                            ++..+.+.+. +|  +++.+|.||.|.|.....
T Consensus       241 ------~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~  273 (464)
T 2a8x_A          241 ------GGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNV  273 (464)
T ss_dssp             ------CSSCEEEEEESSSCEEEEEESEEEECSCEEECC
T ss_pred             ------cCCeEEEEEEcCCceEEEEcCEEEECCCCCccC
Confidence                  2233666664 56  579999999999976543

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.99  E-value=1.2e-05  Score=82.62  Aligned_cols=98  Identities=18%  Similarity=0.263  Sum_probs=73.4

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      .-+|+|||||++|+-+|..|++.    |.+|+|+|+.+.+.          +     .+.                    
T Consensus       171 ~~~vvViGgG~~g~e~A~~l~~~----g~~Vtlv~~~~~~l----------~-----~~~--------------------  211 (458)
T 1lvl_A          171 PQHLVVVGGGYIGLELGIAYRKL----GAQVSVVEARERIL----------P-----TYD--------------------  211 (458)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHH----TCEEEEECSSSSSS----------T-----TSC--------------------
T ss_pred             CCeEEEECcCHHHHHHHHHHHHC----CCeEEEEEcCCccc----------c-----ccC--------------------
Confidence            35899999999999999999996    89999999987541          0     000                    


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                                                          ..+...+.+.+++.| ++++++++|++++.              
T Consensus       212 ------------------------------------~~~~~~l~~~l~~~g-v~i~~~~~v~~i~~--------------  240 (458)
T 1lvl_A          212 ------------------------------------SELTAPVAESLKKLG-IALHLGHSVEGYEN--------------  240 (458)
T ss_dssp             ------------------------------------HHHHHHHHHHHHHHT-CEEETTCEEEEEET--------------
T ss_pred             ------------------------------------HHHHHHHHHHHHHCC-CEEEECCEEEEEEe--------------
Confidence                                                123345566666667 99999999999852              


Q ss_pred             cccccccCCeeEEEcCCC--cEEEeeEEEEecCCCchh
Q 010200          215 ATTLFTKGHLAKLDLSDG--TSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g--~~~~ad~vV~AdG~~S~v  250 (515)
                              +.+.+...+|  +++.+|.||.|+|.....
T Consensus       241 --------~~v~v~~~~G~~~~i~~D~vv~a~G~~p~~  270 (458)
T 1lvl_A          241 --------GCLLANDGKGGQLRLEADRVLVAVGRRPRT  270 (458)
T ss_dssp             --------TEEEEECSSSCCCEECCSCEEECCCEEECC
T ss_pred             --------CCEEEEECCCceEEEECCEEEECcCCCcCC
Confidence                    2255654456  589999999999986554

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.98  E-value=3.4e-05  Score=79.62  Aligned_cols=101  Identities=20%  Similarity=0.267  Sum_probs=78.6

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      ..+|+|||||+.|+-+|..|++.   .|.+|+++|+.+.+...         .                           
T Consensus       159 ~~~vvViGgG~~g~e~A~~l~~~---~g~~Vtlv~~~~~~l~~---------~---------------------------  199 (472)
T 3iwa_A          159 VSKAVIVGGGFIGLEMAVSLADM---WGIDTTVVELADQIMPG---------F---------------------------  199 (472)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHH---HCCEEEEECSSSSSSTT---------T---------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHh---cCCcEEEEEccCccccc---------c---------------------------
Confidence            45899999999999999999983   17899999988744100         0                           


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                                                        ....+...|.+.+++.| ++++++++|++++.              
T Consensus       200 ----------------------------------~~~~~~~~l~~~l~~~G-V~i~~~~~v~~i~~--------------  230 (472)
T 3iwa_A          200 ----------------------------------TSKSLSQMLRHDLEKND-VVVHTGEKVVRLEG--------------  230 (472)
T ss_dssp             ----------------------------------SCHHHHHHHHHHHHHTT-CEEECSCCEEEEEE--------------
T ss_pred             ----------------------------------cCHHHHHHHHHHHHhcC-CEEEeCCEEEEEEc--------------
Confidence                                              01245566777777887 99999999999975              


Q ss_pred             cccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200          215 ATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR  249 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~  249 (515)
                            .+..+++.+.+|+++.+|.||.|.|....
T Consensus       231 ------~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~  259 (472)
T 3iwa_A          231 ------ENGKVARVITDKRTLDADLVILAAGVSPN  259 (472)
T ss_dssp             ------SSSBEEEEEESSCEEECSEEEECSCEEEC
T ss_pred             ------cCCeEEEEEeCCCEEEcCEEEECCCCCcC
Confidence                  33557788888989999999999998653

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.98  E-value=1.1e-05  Score=83.21  Aligned_cols=100  Identities=15%  Similarity=0.317  Sum_probs=75.6

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      .-+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.          ..     +                     
T Consensus       177 ~~~vvViGgG~~g~e~A~~l~~~----g~~Vtli~~~~~~l----------~~-----~---------------------  216 (470)
T 1dxl_A          177 PKKLVVIGAGYIGLEMGSVWGRI----GSEVTVVEFASEIV----------PT-----M---------------------  216 (470)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHH----TCEEEEECSSSSSS----------TT-----S---------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCcEEEEEcCCccc----------cc-----c---------------------
Confidence            45899999999999999999996    89999999987541          00     0                     


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                                                         ...+.+.+.+.+++.| ++++++++|++++.              
T Consensus       217 -----------------------------------~~~~~~~l~~~l~~~g-v~i~~~~~v~~i~~--------------  246 (470)
T 1dxl_A          217 -----------------------------------DAEIRKQFQRSLEKQG-MKFKLKTKVVGVDT--------------  246 (470)
T ss_dssp             -----------------------------------CHHHHHHHHHHHHHSS-CCEECSEEEEEEEC--------------
T ss_pred             -----------------------------------cHHHHHHHHHHHHHcC-CEEEeCCEEEEEEE--------------
Confidence                                               0134455677777777 99999999999975              


Q ss_pred             cccccccCCeeEEEcC---CC--cEEEeeEEEEecCCCchh
Q 010200          215 ATTLFTKGHLAKLDLS---DG--TSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~---~g--~~~~ad~vV~AdG~~S~v  250 (515)
                            ++..+.+.+.   +|  +++.+|.||.|.|.....
T Consensus       247 ------~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~  281 (470)
T 1dxl_A          247 ------SGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFT  281 (470)
T ss_dssp             ------SSSSEEEEEEESSSCCCEEEEESEEECCCCEEECC
T ss_pred             ------cCCeEEEEEEecCCCcceEEECCEEEECCCCCcCC
Confidence                  2233555554   44  579999999999987653

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.98  E-value=4.5e-05  Score=78.19  Aligned_cols=99  Identities=17%  Similarity=0.206  Sum_probs=77.0

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      ..+|+|||||..|+-+|..|++.    |.+|+++|+.+.+...                                     
T Consensus       147 ~~~vvViGgG~~g~E~A~~l~~~----g~~Vtlv~~~~~~l~~-------------------------------------  185 (452)
T 3oc4_A          147 SQTVAVIGAGPIGMEAIDFLVKM----KKTVHVFESLENLLPK-------------------------------------  185 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSSSSSTT-------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC----CCeEEEEEccCccccc-------------------------------------
Confidence            35799999999999999999996    8999999998754100                                     


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                        .                +               -..+...+.+.+++.| ++++++++|++++.              
T Consensus       186 --~----------------~---------------d~~~~~~l~~~l~~~G-V~i~~~~~v~~i~~--------------  217 (452)
T 3oc4_A          186 --Y----------------F---------------DKEMVAEVQKSLEKQA-VIFHFEETVLGIEE--------------  217 (452)
T ss_dssp             --T----------------C---------------CHHHHHHHHHHHHTTT-EEEEETCCEEEEEE--------------
T ss_pred             --c----------------C---------------CHHHHHHHHHHHHHcC-CEEEeCCEEEEEEc--------------
Confidence              0                0               0234566777778887 99999999999975              


Q ss_pred             cccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200          215 ATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR  249 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~  249 (515)
                            .++.+.+.+++| ++.+|.||.|.|....
T Consensus       218 ------~~~~v~v~~~~g-~i~aD~Vv~A~G~~p~  245 (452)
T 3oc4_A          218 ------TANGIVLETSEQ-EISCDSGIFALNLHPQ  245 (452)
T ss_dssp             ------CSSCEEEEESSC-EEEESEEEECSCCBCC
T ss_pred             ------cCCeEEEEECCC-EEEeCEEEECcCCCCC
Confidence                  234457777777 8999999999998654

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.98  E-value=4.4e-05  Score=79.28  Aligned_cols=38  Identities=18%  Similarity=0.364  Sum_probs=33.3

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ..++.+|||||||+||+++|..|++.    +++|+|+|+++.
T Consensus        39 ~~~KprVVIIGgG~AGl~~A~~L~~~----~~~VtLId~~~~   76 (502)
T 4g6h_A           39 HSDKPNVLILGSGWGAISFLKHIDTK----KYNVSIISPRSY   76 (502)
T ss_dssp             SCSSCEEEEECSSHHHHHHHHHSCTT----TCEEEEEESSSE
T ss_pred             CCCCCCEEEECCcHHHHHHHHHhhhC----CCcEEEECCCCC
Confidence            34456899999999999999999985    899999999873

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.98  E-value=5.9e-05  Score=77.31  Aligned_cols=100  Identities=17%  Similarity=0.286  Sum_probs=75.5

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      ..+|+|||||..|+-+|..|++.    |.+|+|+|+.+.+...                                     
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~----g~~Vtlv~~~~~~l~~-------------------------------------  187 (452)
T 2cdu_A          149 AKTITIIGSGYIGAELAEAYSNQ----NYNVNLIDGHERVLYK-------------------------------------  187 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTT----TCEEEEEESSSSTTTT-------------------------------------
T ss_pred             CCeEEEECcCHHHHHHHHHHHhc----CCEEEEEEcCCchhhh-------------------------------------
Confidence            35799999999999999999996    8999999998754100                                     


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                        .+                               -..+...+.+.+++.| ++++++++|++++.              
T Consensus       188 --~~-------------------------------~~~~~~~l~~~l~~~G-v~i~~~~~v~~i~~--------------  219 (452)
T 2cdu_A          188 --YF-------------------------------DKEFTDILAKDYEAHG-VNLVLGSKVAAFEE--------------  219 (452)
T ss_dssp             --TS-------------------------------CHHHHHHHHHHHHHTT-CEEEESSCEEEEEE--------------
T ss_pred             --hh-------------------------------hhhHHHHHHHHHHHCC-CEEEcCCeeEEEEc--------------
Confidence              00                               0124456677777787 99999999999964              


Q ss_pred             cccccccCCeeE-EEcCCCcEEEeeEEEEecCCCchh
Q 010200          215 ATTLFTKGHLAK-LDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       215 ~~~~~~~~~~~~-v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                            .++.+. +.+ +|+++.+|.||.|.|.....
T Consensus       220 ------~~~~v~~v~~-~g~~i~~D~vv~a~G~~p~~  249 (452)
T 2cdu_A          220 ------VDDEIITKTL-DGKEIKSDIAILCIGFRPNT  249 (452)
T ss_dssp             ------ETTEEEEEET-TSCEEEESEEEECCCEEECC
T ss_pred             ------CCCeEEEEEe-CCCEEECCEEEECcCCCCCH
Confidence                  223343 444 77889999999999976543

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.97  E-value=2.6e-05  Score=80.94  Aligned_cols=104  Identities=14%  Similarity=0.190  Sum_probs=77.6

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      .-+|+|||||..|+-+|..|++... +|.+|+|+|+.+.+.          .     .+                     
T Consensus       191 ~~~vvViGgG~ig~E~A~~l~~~~~-~g~~Vtlv~~~~~~l----------~-----~~---------------------  233 (495)
T 2wpf_A          191 PRRVLTVGGGFISVEFAGIFNAYKP-PGGKVTLCYRNNLIL----------R-----GF---------------------  233 (495)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCC-TTCEEEEEESSSSSC----------T-----TS---------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCC-CCCeEEEEEcCCccc----------c-----cc---------------------
Confidence            3589999999999999999988300 188999999987540          0     00                     


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                                                         -.++...|.+.+++.| ++++++++|++++.              
T Consensus       234 -----------------------------------d~~~~~~l~~~l~~~G-V~i~~~~~v~~i~~--------------  263 (495)
T 2wpf_A          234 -----------------------------------DETIREEVTKQLTANG-IEIMTNENPAKVSL--------------  263 (495)
T ss_dssp             -----------------------------------CHHHHHHHHHHHHHTT-CEEEESCCEEEEEE--------------
T ss_pred             -----------------------------------CHHHHHHHHHHHHhCC-CEEEeCCEEEEEEE--------------
Confidence                                               0123355666777777 99999999999975              


Q ss_pred             cccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200          215 ATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                           +.+..+.+.+.+|+++.+|.||.|.|.....
T Consensus       264 -----~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~  294 (495)
T 2wpf_A          264 -----NTDGSKHVTFESGKTLDVDVVMMAIGRIPRT  294 (495)
T ss_dssp             -----CTTSCEEEEETTSCEEEESEEEECSCEEECC
T ss_pred             -----cCCceEEEEECCCcEEEcCEEEECCCCcccc
Confidence                 1113467888889899999999999986554

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=97.97  E-value=6.9e-05  Score=72.70  Aligned_cols=98  Identities=21%  Similarity=0.222  Sum_probs=71.5

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      ..+|+|||+|++|+-+|..|++.    |.+|+++++.+.+.          .       .                    
T Consensus       145 ~~~v~ViG~G~~g~e~A~~l~~~----g~~Vtlv~~~~~~~----------~-------~--------------------  183 (320)
T 1trb_A          145 NQKVAVIGGGNTAVEEALYLSNI----ASEVHLIHRRDGFR----------A-------E--------------------  183 (320)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTT----SSEEEEECSSSSCC----------C-------C--------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhc----CCeEEEEEeCCccc----------c-------C--------------------
Confidence            35799999999999999999996    89999999876430          0       0                    


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                                                          ..+.+.+.+.+++.| ++++++++|++++.              
T Consensus       184 ------------------------------------~~~~~~l~~~l~~~g-v~i~~~~~v~~i~~--------------  212 (320)
T 1trb_A          184 ------------------------------------KILIKRLMDKVENGN-IILHTNRTLEEVTG--------------  212 (320)
T ss_dssp             ------------------------------------HHHHHHHHHHHHTSS-EEEECSCEEEEEEE--------------
T ss_pred             ------------------------------------HHHHHHHHHhcccCC-eEEEcCceeEEEEc--------------
Confidence                                                123345666777777 99999999999975              


Q ss_pred             cccccccCCeeEEEcCC----C--cEEEeeEEEEecCCCch
Q 010200          215 ATTLFTKGHLAKLDLSD----G--TSLYAKLVVGADGGKSR  249 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~----g--~~~~ad~vV~AdG~~S~  249 (515)
                           +.+....+.+.+    |  .++.+|.||.|.|....
T Consensus       213 -----~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~  248 (320)
T 1trb_A          213 -----DQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPN  248 (320)
T ss_dssp             -----CSSSEEEEEEECCTTCCCCEEEECSEEEECSCEEES
T ss_pred             -----CCCceEEEEEEeccCCCceEEEEcCEEEEEeCCCCC
Confidence                 011222244433    4  47999999999996543

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.96  E-value=3.7e-05  Score=78.31  Aligned_cols=103  Identities=16%  Similarity=0.252  Sum_probs=76.1

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      .-+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.          .                      .     
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~----G~~Vtlv~~~~~~l----------~----------------------~-----  187 (431)
T 1q1r_A          149 DNRLVVIGGGYIGLEVAATAIKA----NMHVTLLDTAARVL----------E----------------------R-----  187 (431)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSTT----------T----------------------T-----
T ss_pred             CCeEEEECCCHHHHHHHHHHHhC----CCEEEEEEeCCccc----------c----------------------c-----
Confidence            45799999999999999999996    89999999877440          0                      0     


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                        .                               ....+...+.+.+++.| ++++++++|++++.         .  + 
T Consensus       188 --~-------------------------------~~~~~~~~l~~~l~~~G-V~i~~~~~v~~i~~---------~--~-  221 (431)
T 1q1r_A          188 --V-------------------------------TAPPVSAFYEHLHREAG-VDIRTGTQVCGFEM---------S--T-  221 (431)
T ss_dssp             --T-------------------------------SCHHHHHHHHHHHHHHT-CEEECSCCEEEEEE---------C--T-
T ss_pred             --h-------------------------------hhHHHHHHHHHHHHhCC-eEEEeCCEEEEEEe---------c--c-
Confidence              0                               00134455666677777 99999999999863         0  0 


Q ss_pred             cccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200          215 ATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR  249 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~  249 (515)
                           +++....+.+.+|+++.+|.||.|.|....
T Consensus       222 -----~~~~v~~v~~~~G~~i~~D~Vv~a~G~~p~  251 (431)
T 1q1r_A          222 -----DQQKVTAVLCEDGTRLPADLVIAGIGLIPN  251 (431)
T ss_dssp             -----TTCCEEEEEETTSCEEECSEEEECCCEEEC
T ss_pred             -----CCCcEEEEEeCCCCEEEcCEEEECCCCCcC
Confidence                 012233677889989999999999997643

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.95  E-value=2.7e-05  Score=80.26  Aligned_cols=98  Identities=15%  Similarity=0.181  Sum_probs=76.5

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      .-+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.          .      +.                    
T Consensus       176 ~~~vvViGgG~~g~E~A~~l~~~----g~~Vtlv~~~~~~l----------~------~~--------------------  215 (467)
T 1zk7_A          176 PERLAVIGSSVVALELAQAFARL----GSKVTVLARNTLFF----------R------ED--------------------  215 (467)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSCTTT----------T------SC--------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc----CCEEEEEEECCccC----------C------CC--------------------
Confidence            35799999999999999999996    89999999987540          0      00                    


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                                                          ..+...+.+.+++.| ++++.+++|++++.              
T Consensus       216 ------------------------------------~~~~~~l~~~l~~~G-v~i~~~~~v~~i~~--------------  244 (467)
T 1zk7_A          216 ------------------------------------PAIGEAVTAAFRAEG-IEVLEHTQASQVAH--------------  244 (467)
T ss_dssp             ------------------------------------HHHHHHHHHHHHHTT-CEEETTCCEEEEEE--------------
T ss_pred             ------------------------------------HHHHHHHHHHHHhCC-CEEEcCCEEEEEEE--------------
Confidence                                                234456777777777 99999999999975              


Q ss_pred             cccccccCCeeEEEcCCCcEEEeeEEEEecCCCchh
Q 010200          215 ATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                            ++..+.+.++ +.++.+|.||.|.|.++..
T Consensus       245 ------~~~~~~v~~~-~~~i~aD~Vv~a~G~~p~~  273 (467)
T 1zk7_A          245 ------MDGEFVLTTT-HGELRADKLLVATGRTPNT  273 (467)
T ss_dssp             ------ETTEEEEEET-TEEEEESEEEECSCEEESC
T ss_pred             ------eCCEEEEEEC-CcEEEcCEEEECCCCCcCC
Confidence                  3344566665 4579999999999987664

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=97.95  E-value=4.9e-06  Score=83.97  Aligned_cols=42  Identities=26%  Similarity=0.574  Sum_probs=36.3

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS   97 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~   97 (515)
                      ..++||+|||||++||++|+.|++.   .|++|+|+|+++.++..
T Consensus         5 ~~~~~v~IiGaG~~Gl~aA~~L~~~---~g~~v~v~E~~~~~GG~   46 (399)
T 1v0j_A            5 TARFDLFVVGSGFFGLTIAERVATQ---LDKRVLVLERRPHIGGN   46 (399)
T ss_dssp             CCSCSEEEECCSHHHHHHHHHHHHH---SCCCEEEECSSSSSSGG
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHh---CCCCEEEEeCCCCCCCe
Confidence            3468999999999999999999994   28999999999877543

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=97.94  E-value=6.3e-06  Score=82.56  Aligned_cols=40  Identities=38%  Similarity=0.610  Sum_probs=36.1

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      ....+||+|||||++||++|+.|++.    |++|+|+|+++.++
T Consensus        26 ~~~~~dv~IIGaG~aGl~aA~~l~~~----g~~v~v~E~~~~~G   65 (397)
T 3hdq_A           26 ESKGFDYLIVGAGFAGSVLAERLASS----GQRVLIVDRRPHIG   65 (397)
T ss_dssp             CCCCEEEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSSS
T ss_pred             cCCCCCEEEECccHHHHHHHHHHHHC----CCceEEEeccCCCC
Confidence            34579999999999999999999996    99999999988775

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.93  E-value=3.6e-05  Score=81.28  Aligned_cols=117  Identities=16%  Similarity=0.224  Sum_probs=79.5

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      -+|+|||||+.|+-+|..|++.    |.+|+++|+.+.+.          .     .+                      
T Consensus       152 ~~vvViGgG~~g~e~A~~l~~~----g~~Vtlv~~~~~~l----------~-----~~----------------------  190 (565)
T 3ntd_A          152 EHATVVGGGFIGLEMMESLHHL----GIKTTLLELADQVM----------T-----PV----------------------  190 (565)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSSSSC----------T-----TS----------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhc----CCcEEEEEcCCccc----------h-----hc----------------------
Confidence            4799999999999999999996    89999999987541          0     00                      


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                                                        ...+...+.+.+++.| ++++++++|++++................
T Consensus       191 ----------------------------------~~~~~~~l~~~l~~~G-V~i~~~~~v~~i~~~~~~~~~~~~~~~~~  235 (565)
T 3ntd_A          191 ----------------------------------DREMAGFAHQAIRDQG-VDLRLGTALSEVSYQVQTHVASDAAGEDT  235 (565)
T ss_dssp             ----------------------------------CHHHHHHHHHHHHHTT-CEEEETCCEEEEEEECCCCCCCGGGTCCC
T ss_pred             ----------------------------------CHHHHHHHHHHHHHCC-CEEEeCCeEEEEecccccccccccccccc
Confidence                                              0123455666677777 99999999999975211111111000000


Q ss_pred             ccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200          216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR  249 (515)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~  249 (515)
                      . .......+++.+.+|+++.+|.||.|.|....
T Consensus       236 ~-~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  268 (565)
T 3ntd_A          236 A-HQHIKGHLSLTLSNGELLETDLLIMAIGVRPE  268 (565)
T ss_dssp             T-TCCTTCEEEEEETTSCEEEESEEEECSCEEEC
T ss_pred             c-cccCCCcEEEEEcCCCEEEcCEEEECcCCccc
Confidence            0 00023557788888989999999999998654

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.93  E-value=4.6e-05  Score=78.81  Aligned_cols=99  Identities=16%  Similarity=0.290  Sum_probs=74.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      ...+|+|||||++|+-+|..|++.    |.+|+|+|+.+.+.          .     .+                    
T Consensus       185 ~~~~vvViGgG~~g~e~A~~l~~~----g~~Vtlv~~~~~~l----------~-----~~--------------------  225 (480)
T 3cgb_A          185 KVEDVTIIGGGAIGLEMAETFVEL----GKKVRMIERNDHIG----------T-----IY--------------------  225 (480)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHT----TCEEEEECCGGGTT----------S-----SS--------------------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhc----CCeEEEEEeCCchh----------h-----cC--------------------
Confidence            346899999999999999999996    89999999887541          0     00                    


Q ss_pred             hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (515)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~  213 (515)
                                                          ...+...+.+.+++.| ++++++++|++++.             
T Consensus       226 ------------------------------------~~~~~~~l~~~l~~~G-v~i~~~~~v~~i~~-------------  255 (480)
T 3cgb_A          226 ------------------------------------DGDMAEYIYKEADKHH-IEILTNENVKAFKG-------------  255 (480)
T ss_dssp             ------------------------------------CHHHHHHHHHHHHHTT-CEEECSCCEEEEEE-------------
T ss_pred             ------------------------------------CHHHHHHHHHHHHHcC-cEEEcCCEEEEEEc-------------
Confidence                                                0234566777777787 99999999999975             


Q ss_pred             CcccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200          214 SATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR  249 (515)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~  249 (515)
                             ++....+.++ +.++.+|.||.|.|....
T Consensus       256 -------~~~v~~v~~~-~~~i~~D~vi~a~G~~p~  283 (480)
T 3cgb_A          256 -------NERVEAVETD-KGTYKADLVLVSVGVKPN  283 (480)
T ss_dssp             -------SSBEEEEEET-TEEEECSEEEECSCEEES
T ss_pred             -------CCcEEEEEEC-CCEEEcCEEEECcCCCcC
Confidence                   2222234444 457999999999998654

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.92  E-value=4.2e-05  Score=79.31  Aligned_cols=98  Identities=18%  Similarity=0.211  Sum_probs=74.0

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      .-+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.          .     .+.                    
T Consensus       174 ~k~vvViGgG~ig~E~A~~l~~~----g~~Vtlv~~~~~~l----------~-----~~d--------------------  214 (492)
T 3ic9_A          174 PKSVAVFGPGVIGLELGQALSRL----GVIVKVFGRSGSVA----------N-----LQD--------------------  214 (492)
T ss_dssp             CSEEEEESSCHHHHHHHHHHHHT----TCEEEEECCTTCCT----------T-----CCC--------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCeEEEEEECCccc----------c-----cCC--------------------
Confidence            45799999999999999999996    89999999988551          0     000                    


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                                                          ..+.+.+.+.+++.  ++++++++|++++.              
T Consensus       215 ------------------------------------~~~~~~l~~~l~~~--V~i~~~~~v~~i~~--------------  242 (492)
T 3ic9_A          215 ------------------------------------EEMKRYAEKTFNEE--FYFDAKARVISTIE--------------  242 (492)
T ss_dssp             ------------------------------------HHHHHHHHHHHHTT--SEEETTCEEEEEEE--------------
T ss_pred             ------------------------------------HHHHHHHHHHHhhC--cEEEECCEEEEEEE--------------
Confidence                                                03445555655553  89999999999976              


Q ss_pred             cccccccCCeeEEEcC--CC--cEEEeeEEEEecCCCch
Q 010200          215 ATTLFTKGHLAKLDLS--DG--TSLYAKLVVGADGGKSR  249 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~--~g--~~~~ad~vV~AdG~~S~  249 (515)
                            .++.+.+.+.  +|  .++.+|.||.|.|....
T Consensus       243 ------~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~  275 (492)
T 3ic9_A          243 ------KEDAVEVIYFDKSGQKTTESFQYVLAATGRKAN  275 (492)
T ss_dssp             ------CSSSEEEEEECTTCCEEEEEESEEEECSCCEES
T ss_pred             ------cCCEEEEEEEeCCCceEEEECCEEEEeeCCccC
Confidence                  3344666664  67  57999999999998654

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.92  E-value=6.8e-05  Score=77.72  Aligned_cols=99  Identities=23%  Similarity=0.306  Sum_probs=74.2

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      .-+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+...                                     
T Consensus       194 ~~~vvVIGgG~ig~E~A~~l~~~----g~~Vtlv~~~~~~l~~-------------------------------------  232 (490)
T 2bc0_A          194 IKRVAVVGAGYIGVELAEAFQRK----GKEVVLIDVVDTCLAG-------------------------------------  232 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSSSTTTT-------------------------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHC----CCeEEEEEcccchhhh-------------------------------------
Confidence            45799999999999999999996    8999999998754100                                     


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                        .                +               -.++...+.+.+++.| ++++++++|++++.              
T Consensus       233 --~----------------~---------------~~~~~~~l~~~l~~~G-V~i~~~~~v~~i~~--------------  264 (490)
T 2bc0_A          233 --Y----------------Y---------------DRDLTDLMAKNMEEHG-IQLAFGETVKEVAG--------------  264 (490)
T ss_dssp             --T----------------S---------------CHHHHHHHHHHHHTTT-CEEEETCCEEEEEC--------------
T ss_pred             --H----------------H---------------HHHHHHHHHHHHHhCC-eEEEeCCEEEEEEc--------------
Confidence              0                0               0234456777788887 99999999999964              


Q ss_pred             cccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200          215 ATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR  249 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~  249 (515)
                            ++....+.+ +|+++.+|.||.|.|....
T Consensus       265 ------~~~v~~v~~-~g~~i~~D~Vi~a~G~~p~  292 (490)
T 2bc0_A          265 ------NGKVEKIIT-DKNEYDVDMVILAVGFRPN  292 (490)
T ss_dssp             ------SSSCCEEEE-SSCEEECSEEEECCCEEEC
T ss_pred             ------CCcEEEEEE-CCcEEECCEEEECCCCCcC
Confidence                  112223444 6778999999999997654

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.91  E-value=2.9e-05  Score=80.52  Aligned_cols=100  Identities=22%  Similarity=0.305  Sum_probs=75.6

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      .-+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.          .     .+.                    
T Consensus       198 ~~~vvViGgG~~g~E~A~~l~~~----g~~Vtlv~~~~~~l----------~-----~~d--------------------  238 (491)
T 3urh_A          198 PASMIVVGGGVIGLELGSVWARL----GAKVTVVEFLDTIL----------G-----GMD--------------------  238 (491)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHH----TCEEEEECSSSSSS----------S-----SSC--------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCEEEEEecccccc----------c-----cCC--------------------
Confidence            45799999999999999999996    89999999887541          0     000                    


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                                                          ..+.+.+.+.+++.| ++++.+++|++++.              
T Consensus       239 ------------------------------------~~~~~~l~~~l~~~g-V~v~~~~~v~~i~~--------------  267 (491)
T 3urh_A          239 ------------------------------------GEVAKQLQRMLTKQG-IDFKLGAKVTGAVK--------------  267 (491)
T ss_dssp             ------------------------------------HHHHHHHHHHHHHTT-CEEECSEEEEEEEE--------------
T ss_pred             ------------------------------------HHHHHHHHHHHHhCC-CEEEECCeEEEEEE--------------
Confidence                                                234455667777777 99999999999976              


Q ss_pred             cccccccCCeeEEEcCC---C--cEEEeeEEEEecCCCchh
Q 010200          215 ATTLFTKGHLAKLDLSD---G--TSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~---g--~~~~ad~vV~AdG~~S~v  250 (515)
                            .+..+.+.+.+   |  +++.+|.||.|.|.....
T Consensus       268 ------~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  302 (491)
T 3urh_A          268 ------SGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPST  302 (491)
T ss_dssp             ------ETTEEEEEEEETTSCCCEEEEESEEEECCCCEECC
T ss_pred             ------eCCEEEEEEEecCCCceEEEEcCEEEEeeCCccCC
Confidence                  33445565542   4  479999999999986543

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.89  E-value=7.9e-05  Score=77.27  Aligned_cols=103  Identities=17%  Similarity=0.243  Sum_probs=75.6

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      -+|+|||||..|+-+|..|++.+...|.+|+++++.+.+..                                .      
T Consensus       181 ~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~--------------------------------~------  222 (493)
T 1m6i_A          181 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMG--------------------------------K------  222 (493)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTT--------------------------------T------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCccccc--------------------------------c------
Confidence            57999999999999999997621001688999987753200                                0      


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                       .+                               ...+...+.+.+++.| ++++++++|++++.               
T Consensus       223 -~l-------------------------------~~~~~~~~~~~l~~~G-V~v~~~~~V~~i~~---------------  254 (493)
T 1m6i_A          223 -IL-------------------------------PEYLSNWTMEKVRREG-VKVMPNAIVQSVGV---------------  254 (493)
T ss_dssp             -TS-------------------------------CHHHHHHHHHHHHTTT-CEEECSCCEEEEEE---------------
T ss_pred             -cC-------------------------------CHHHHHHHHHHHHhcC-CEEEeCCEEEEEEe---------------
Confidence             00                               0134455667777887 99999999999975               


Q ss_pred             ccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200          216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR  249 (515)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~  249 (515)
                           .+..+.+.+.+|+++.+|+||.|.|....
T Consensus       255 -----~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn  283 (493)
T 1m6i_A          255 -----SSGKLLIKLKDGRKVETDHIVAAVGLEPN  283 (493)
T ss_dssp             -----ETTEEEEEETTSCEEEESEEEECCCEEEC
T ss_pred             -----cCCeEEEEECCCCEEECCEEEECCCCCcc
Confidence                 23456788889999999999999997654

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=97.86  E-value=5.4e-05  Score=78.15  Aligned_cols=100  Identities=17%  Similarity=0.294  Sum_probs=75.7

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      ..+|+|||||+.|+-+|..|++.    |.+|+++|+.+.+.          .     .+                     
T Consensus       180 ~~~v~ViGgG~~g~e~A~~l~~~----g~~Vtlv~~~~~~l----------~-----~~---------------------  219 (476)
T 3lad_A          180 PGKLGVIGAGVIGLELGSVWARL----GAEVTVLEAMDKFL----------P-----AV---------------------  219 (476)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSSSSS----------T-----TS---------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCcEEEEecCCCcC----------c-----cc---------------------
Confidence            45799999999999999999996    89999999987440          0     00                     


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                                                         -..+...+.+.+++.| ++++.+++|++++.              
T Consensus       220 -----------------------------------~~~~~~~l~~~l~~~G-v~v~~~~~v~~i~~--------------  249 (476)
T 3lad_A          220 -----------------------------------DEQVAKEAQKILTKQG-LKILLGARVTGTEV--------------  249 (476)
T ss_dssp             -----------------------------------CHHHHHHHHHHHHHTT-EEEEETCEEEEEEE--------------
T ss_pred             -----------------------------------CHHHHHHHHHHHHhCC-CEEEECCEEEEEEE--------------
Confidence                                               0124456666777777 99999999999976              


Q ss_pred             cccccccCCeeEEEcCCC---cEEEeeEEEEecCCCchh
Q 010200          215 ATTLFTKGHLAKLDLSDG---TSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g---~~~~ad~vV~AdG~~S~v  250 (515)
                            .+..+.+.+.++   +++.+|.||.|.|.....
T Consensus       250 ------~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~~  282 (476)
T 3lad_A          250 ------KNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVT  282 (476)
T ss_dssp             ------CSSCEEEEEESSSEEEEEEESEEEECSCEEECC
T ss_pred             ------cCCEEEEEEEeCCCcEEEECCEEEEeeCCcccC
Confidence                  334456666544   579999999999976543

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=97.84  E-value=0.00012  Score=71.64  Aligned_cols=36  Identities=25%  Similarity=0.408  Sum_probs=32.0

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ..+|+|||||..|+-+|..|++.    |.+|+++++.+.+
T Consensus       152 ~~~v~viG~G~~g~e~a~~l~~~----g~~V~~v~~~~~~  187 (335)
T 2zbw_A          152 GKRVLIVGGGDSAVDWALNLLDT----ARRITLIHRRPQF  187 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTTT----SSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhh----CCEEEEEEcCCcc
Confidence            35899999999999999999996    8999999987743

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=97.80  E-value=1.7e-05  Score=79.48  Aligned_cols=37  Identities=30%  Similarity=0.491  Sum_probs=34.4

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      ++||+|||||++|+++|+.|++.    |++|+|+|+++.++
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~----g~~v~v~E~~~~~G   39 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEK----GHQVHIIDQRDHIG   39 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT----TCEEEEEESSSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC----CCcEEEEEecCCcC
Confidence            47999999999999999999996    89999999998775

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=97.80  E-value=1.4e-05  Score=79.71  Aligned_cols=37  Identities=30%  Similarity=0.574  Sum_probs=33.9

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK   96 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~   96 (515)
                      +||+|||||++||++|+.|++.    |++|+|+|+++.++.
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~----g~~v~v~E~~~~~GG   38 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKL----NKKVLVIEKRNHIGG   38 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGG----TCCEEEECSSSSSSG
T ss_pred             CCEEEECcCHHHHHHHHHHHhC----CCcEEEEecCCCCCc
Confidence            7999999999999999999996    899999999987653

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=97.77  E-value=1.5e-05  Score=85.03  Aligned_cols=39  Identities=33%  Similarity=0.480  Sum_probs=34.4

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      ...+||+|||||++|+++|+.|++.    |++|+|+|+....+
T Consensus        44 ~~~~dvvIIG~G~aGl~aA~~l~~~----G~~V~liE~~~~~g   82 (623)
T 3pl8_A           44 DIKYDVVIVGSGPIGCTYARELVGA----GYKVAMFDIGEIDS   82 (623)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSCCCS
T ss_pred             cccCCEEEECCcHHHHHHHHHHHhC----CCcEEEEeccCCCC
Confidence            3569999999999999999999996    99999999988664

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.76  E-value=7.5e-05  Score=76.15  Aligned_cols=93  Identities=15%  Similarity=0.246  Sum_probs=71.7

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      .+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.                             .          
T Consensus       148 ~~vvViGgG~ig~E~A~~l~~~----g~~Vtlv~~~~~ll-----------------------------~----------  184 (437)
T 4eqs_A          148 DKVLVVGAGYVSLEVLENLYER----GLHPTLIHRSDKIN-----------------------------K----------  184 (437)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH----TCEEEEEESSSCCS-----------------------------T----------
T ss_pred             cEEEEECCccchhhhHHHHHhc----CCcceeeeeecccc-----------------------------c----------
Confidence            4799999999999999999996    99999999987541                             0          


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                       ..+                               .++.+.+.+.+++.| ++++.+++|++++.               
T Consensus       185 -~~d-------------------------------~~~~~~~~~~l~~~g-V~i~~~~~v~~~~~---------------  216 (437)
T 4eqs_A          185 -LMD-------------------------------ADMNQPILDELDKRE-IPYRLNEEINAING---------------  216 (437)
T ss_dssp             -TSC-------------------------------GGGGHHHHHHHHHTT-CCEEESCCEEEEET---------------
T ss_pred             -ccc-------------------------------chhHHHHHHHhhccc-eEEEeccEEEEecC---------------
Confidence             000                               011134566667777 99999999998853               


Q ss_pred             ccccccCCeeEEEcCCCcEEEeeEEEEecCCCc
Q 010200          216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKS  248 (515)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S  248 (515)
                               ..+.+++|+++.+|.||.|.|...
T Consensus       217 ---------~~v~~~~g~~~~~D~vl~a~G~~P  240 (437)
T 4eqs_A          217 ---------NEITFKSGKVEHYDMIIEGVGTHP  240 (437)
T ss_dssp             ---------TEEEETTSCEEECSEEEECCCEEE
T ss_pred             ---------CeeeecCCeEEeeeeEEEEeceec
Confidence                     246678999999999999999643

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=97.74  E-value=8.6e-05  Score=78.80  Aligned_cols=97  Identities=15%  Similarity=0.372  Sum_probs=75.1

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      ..+|+|||||..|+-+|..|++.    |.+|+++|+.+.+.          .     .+                     
T Consensus       187 ~~~vvViGgG~~g~e~A~~l~~~----g~~Vtlv~~~~~~l----------~-----~~---------------------  226 (588)
T 3ics_A          187 PRHATVIGGGFIGVEMVENLRER----GIEVTLVEMANQVM----------P-----PI---------------------  226 (588)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSSC----------T-----TS---------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhC----CCeEEEEecCCccc----------c-----cC---------------------
Confidence            35799999999999999999996    89999999887541          0     00                     


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                                                         -..+...+.+.+++.| ++++.+++|++++.              
T Consensus       227 -----------------------------------~~~~~~~l~~~l~~~G-V~i~~~~~v~~i~~--------------  256 (588)
T 3ics_A          227 -----------------------------------DYEMAAYVHEHMKNHD-VELVFEDGVDALEE--------------  256 (588)
T ss_dssp             -----------------------------------CHHHHHHHHHHHHHTT-CEEECSCCEEEEEG--------------
T ss_pred             -----------------------------------CHHHHHHHHHHHHHcC-CEEEECCeEEEEec--------------
Confidence                                               0123455667777777 99999999999965              


Q ss_pred             cccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200          215 ATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR  249 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~  249 (515)
                            .+.  .+.+.+|+++.+|.||.|.|....
T Consensus       257 ------~~~--~v~~~~g~~i~~D~Vi~a~G~~p~  283 (588)
T 3ics_A          257 ------NGA--VVRLKSGSVIQTDMLILAIGVQPE  283 (588)
T ss_dssp             ------GGT--EEEETTSCEEECSEEEECSCEEEC
T ss_pred             ------CCC--EEEECCCCEEEcCEEEEccCCCCC
Confidence                  222  466778889999999999998654

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.74  E-value=0.00011  Score=75.80  Aligned_cols=101  Identities=10%  Similarity=0.079  Sum_probs=74.2

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      .-+|+|||||..|+-+|..|++.    |.+|+|+++.+.+.          .                  ..        
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~----g~~Vtlv~~~~~~l----------~------------------~~--------  226 (478)
T 3dk9_A          187 PGRSVIVGAGYIAVEMAGILSAL----GSKTSLMIRHDKVL----------R------------------SF--------  226 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSSC----------T------------------TS--------
T ss_pred             CccEEEECCCHHHHHHHHHHHHc----CCeEEEEEeCCccc----------c------------------cc--------
Confidence            35799999999999999999996    89999999887541          0                  00        


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                                                         -..+.+.+.+.+++.| ++++.+++|++++..             
T Consensus       227 -----------------------------------d~~~~~~~~~~l~~~g-v~i~~~~~v~~i~~~-------------  257 (478)
T 3dk9_A          227 -----------------------------------DSMISTNCTEELENAG-VEVLKFSQVKEVKKT-------------  257 (478)
T ss_dssp             -----------------------------------CHHHHHHHHHHHHHTT-CEEETTEEEEEEEEC-------------
T ss_pred             -----------------------------------CHHHHHHHHHHHHHCC-CEEEeCCEEEEEEEc-------------
Confidence                                               0123355666777777 999999999999750             


Q ss_pred             cccccccCCeeEEEcCC---C----cEEEeeEEEEecCCCch
Q 010200          215 ATTLFTKGHLAKLDLSD---G----TSLYAKLVVGADGGKSR  249 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~---g----~~~~ad~vV~AdG~~S~  249 (515)
                           +++..+.+.+.+   |    .++.+|.||.|.|....
T Consensus       258 -----~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~  294 (478)
T 3dk9_A          258 -----LSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPN  294 (478)
T ss_dssp             -----SSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEES
T ss_pred             -----CCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccC
Confidence                 011136676665   2    57899999999997544

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=97.74  E-value=1.9e-05  Score=81.76  Aligned_cols=40  Identities=18%  Similarity=0.288  Sum_probs=35.5

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCC-cEEEEEcCCCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPALGK   96 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G-~~V~v~E~~~~~~~   96 (515)
                      ++.+||+|||||++||++|+.|++.    | .+|+|||+.+.++.
T Consensus         7 ~~~~~v~iiG~G~~Gl~~A~~l~~~----g~~~v~v~E~~~~~GG   47 (484)
T 4dsg_A            7 LLTPKIVIIGAGPTGLGAAVRLTEL----GYKNWHLYECNDTPGG   47 (484)
T ss_dssp             CCSCCEEEECCSHHHHHHHHHHHHT----TCCSEEEEESSSSSSG
T ss_pred             ccCCCEEEECcCHHHHHHHHHHHHc----CCCCEEEEeCCCCCCC
Confidence            3568999999999999999999996    6 79999999987753

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=97.74  E-value=1.9e-05  Score=81.99  Aligned_cols=40  Identities=28%  Similarity=0.491  Sum_probs=35.9

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK   96 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~   96 (515)
                      ...+||+|||||++||++|+.|++.    |++|+|+|+.+.++.
T Consensus        31 ~~~~~v~IiGaG~~Gl~aA~~l~~~----g~~v~vlE~~~~~gg   70 (498)
T 2iid_A           31 SNPKHVVIVGAGMAGLSAAYVLAGA----GHQVTVLEASERPGG   70 (498)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHH----TCEEEEECSSSSSBT
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhC----CCeEEEEECCCCCCC
Confidence            3468999999999999999999996    999999999987754

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=97.73  E-value=0.00011  Score=71.65  Aligned_cols=36  Identities=25%  Similarity=0.243  Sum_probs=32.4

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ..+|+|||+|++|+-+|..|++.    |.+|+++++.+.+
T Consensus       173 ~~~v~vvG~G~~g~e~a~~l~~~----g~~v~~v~~~~~~  208 (338)
T 3itj_A          173 NKPLAVIGGGDSACEEAQFLTKY----GSKVFMLVRKDHL  208 (338)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTT----SSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhc----CCEEEEEEcCCcc
Confidence            45799999999999999999996    8999999988754

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.72  E-value=2.2e-05  Score=80.40  Aligned_cols=38  Identities=26%  Similarity=0.367  Sum_probs=34.5

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ...+||+||||||+||++|+.|++.    |++|+|||+.+.+
T Consensus       120 ~~~~~V~IIGgGpAGl~aA~~L~~~----G~~V~v~e~~~~~  157 (456)
T 2vdc_G          120 ELGLSVGVIGAGPAGLAAAEELRAK----GYEVHVYDRYDRM  157 (456)
T ss_dssp             SCCCCEEEECCSHHHHHHHHHHHHH----TCCEEEECSSSSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC----CCeEEEEeccCCC
Confidence            3568999999999999999999996    9999999998765

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.70  E-value=0.00018  Score=74.36  Aligned_cols=99  Identities=15%  Similarity=0.112  Sum_probs=73.0

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      .-+|+|||||..|+-+|..|++.    |.+|+|+++.....                                       
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~----g~~Vtlv~~~~~l~---------------------------------------  223 (483)
T 3dgh_A          187 PGKTLVVGAGYIGLECAGFLKGL----GYEPTVMVRSIVLR---------------------------------------  223 (483)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSCSST---------------------------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHHc----CCEEEEEeCCCCCc---------------------------------------
Confidence            35799999999999999999996    89999999853220                                       


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                        .+                               -.++...+.+.+++.| ++++++++|.+++.              
T Consensus       224 --~~-------------------------------d~~~~~~l~~~l~~~G-v~i~~~~~v~~i~~--------------  255 (483)
T 3dgh_A          224 --GF-------------------------------DQQMAELVAASMEERG-IPFLRKTVPLSVEK--------------  255 (483)
T ss_dssp             --TS-------------------------------CHHHHHHHHHHHHHTT-CCEEETEEEEEEEE--------------
T ss_pred             --cc-------------------------------CHHHHHHHHHHHHhCC-CEEEeCCEEEEEEE--------------
Confidence              00                               0134455677777777 99999999999975              


Q ss_pred             cccccccCCeeEEEcCCCc-----EEEeeEEEEecCCCch
Q 010200          215 ATTLFTKGHLAKLDLSDGT-----SLYAKLVVGADGGKSR  249 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~-----~~~ad~vV~AdG~~S~  249 (515)
                           +.+..+.+.+.++.     ++.+|.||.|.|....
T Consensus       256 -----~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~  290 (483)
T 3dgh_A          256 -----QDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGL  290 (483)
T ss_dssp             -----CTTSCEEEEEEETTTCCEEEEEESEEEECSCEEEC
T ss_pred             -----cCCCcEEEEEecCCCCceeEEEcCEEEECcccccC
Confidence                 11233556665543     7999999999997543

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=97.68  E-value=0.00012  Score=75.07  Aligned_cols=38  Identities=21%  Similarity=0.307  Sum_probs=32.7

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ..+|+|||||.+|+=+|..|++..  +|.+|++++|.+..
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~--~~~~Vt~v~r~~~~  264 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSY--PSVQADMILRASAL  264 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHC--TTEEEEEECSSSSC
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcC--CCCeEEEEEeCCCC
Confidence            468999999999999999999841  27899999998854

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=97.66  E-value=0.00023  Score=70.47  Aligned_cols=106  Identities=16%  Similarity=0.178  Sum_probs=71.4

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      .+|+|||||.+|+-+|..|++.    |.+|+++++.+...                  .+.       +           
T Consensus       167 ~~vvVvG~G~~g~e~a~~l~~~----g~~V~lv~~~~~~~------------------~~~-------~-----------  206 (369)
T 3d1c_A          167 GQYVVIGGNESGFDAAYQLAKN----GSDIALYTSTTGLN------------------DPD-------A-----------  206 (369)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT----TCEEEEECC---------------------------------------------
T ss_pred             CEEEEECCCcCHHHHHHHHHhc----CCeEEEEecCCCCC------------------CCC-------C-----------
Confidence            4799999999999999999996    89999999887440                  000       0           


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                               +. .   ..               -...+.+.+.+.+++.|+++++.+++|.+++.               
T Consensus       207 ---------d~-~---~~---------------~~~~~~~~l~~~l~~~g~v~~~~~~~v~~i~~---------------  243 (369)
T 3d1c_A          207 ---------DP-S---VR---------------LSPYTRQRLGNVIKQGARIEMNVHYTVKDIDF---------------  243 (369)
T ss_dssp             ----------C-T---TS---------------CCHHHHHHHHHHHHTTCCEEEECSCCEEEEEE---------------
T ss_pred             ---------CC-C---cc---------------CCHHHHHHHHHHHhhCCcEEEecCcEEEEEEe---------------
Confidence                     00 0   00               01233455566666653399999999999964               


Q ss_pred             ccccccCCeeEEEcCCCcEEE-eeEEEEecCCCch
Q 010200          216 TTLFTKGHLAKLDLSDGTSLY-AKLVVGADGGKSR  249 (515)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~-ad~vV~AdG~~S~  249 (515)
                           .+..+.+.+.+|+++. +|.||.|+|....
T Consensus       244 -----~~~~~~v~~~~g~~~~~~d~vi~a~G~~~~  273 (369)
T 3d1c_A          244 -----NNGQYHISFDSGQSVHTPHEPILATGFDAT  273 (369)
T ss_dssp             -----ETTEEEEEESSSCCEEESSCCEECCCBCGG
T ss_pred             -----cCCceEEEecCCeEeccCCceEEeeccCCc
Confidence                 2345678888887665 5999999997654

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=97.65  E-value=0.00016  Score=71.57  Aligned_cols=36  Identities=22%  Similarity=0.357  Sum_probs=31.8

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      .-+|+|||+|++|+-+|..|++.    |.+|+++++.+.+
T Consensus       163 ~~~vvVvG~G~~g~e~A~~l~~~----g~~V~lv~~~~~~  198 (360)
T 3ab1_A          163 GKRVVIVGGGDSALDWTVGLIKN----AASVTLVHRGHEF  198 (360)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTTT----SSEEEEECSSSSC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhc----CCEEEEEEcCCCC
Confidence            35799999999999999999996    8999999987643

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=97.61  E-value=0.00046  Score=66.54  Aligned_cols=36  Identities=31%  Similarity=0.414  Sum_probs=32.0

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ..+|+|||+|+.|+-+|..|++.    |.+|+++++.+.+
T Consensus       143 ~~~v~VvG~G~~g~e~A~~l~~~----g~~Vtlv~~~~~~  178 (311)
T 2q0l_A          143 NKEVAVLGGGDTAVEEAIYLANI----CKKVYLIHRRDGF  178 (311)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHTT----SSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhc----CCEEEEEeeCCcc
Confidence            36899999999999999999996    8999999987644

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=97.57  E-value=0.00061  Score=66.18  Aligned_cols=35  Identities=26%  Similarity=0.369  Sum_probs=31.6

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      .+|+|||+|+.|+-+|..|++.    |.+|+++++.+.+
T Consensus       153 ~~v~VvG~G~~g~e~A~~l~~~----g~~Vtlv~~~~~~  187 (325)
T 2q7v_A          153 KKVVVIGGGDAAVEEGMFLTKF----ADEVTVIHRRDTL  187 (325)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTT----CSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhc----CCEEEEEeCCCcC
Confidence            5799999999999999999996    8999999987643

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=97.56  E-value=4.6e-05  Score=79.75  Aligned_cols=38  Identities=29%  Similarity=0.469  Sum_probs=33.6

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      .+||+||||||++|+.+|..|++.   +|++|+|||++...
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~---~~~~VLvLEaG~~~   53 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSED---PDSRVLLIEAGEEP   53 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTS---TTSCEEEECSSBCC
T ss_pred             CCeeEEEECccHHHHHHHHHHHhC---CCCeEEEEcCCCCC
Confidence            369999999999999999999985   48999999998753

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=97.53  E-value=5.1e-05  Score=79.79  Aligned_cols=37  Identities=24%  Similarity=0.373  Sum_probs=33.5

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ...+||||||||++|+++|..|++.    |++|+|+|++..
T Consensus         5 ~~~~D~iIvG~G~aG~~~A~~L~~~----g~~VlvlE~g~~   41 (546)
T 1kdg_A            5 ATPYDYIIVGAGPGGIIAADRLSEA----GKKVLLLERGGP   41 (546)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHT----TCCEEEECSSCC
T ss_pred             CCceeEEEECcCHHHHHHHHHHHhC----CCeEEEEeCCCC
Confidence            3569999999999999999999996    899999999874

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.53  E-value=0.0004  Score=71.03  Aligned_cols=97  Identities=20%  Similarity=0.261  Sum_probs=71.5

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      .+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+....                                     
T Consensus       149 ~~vvViGgG~~g~E~A~~l~~~----g~~Vtlv~~~~~~l~~~-------------------------------------  187 (449)
T 3kd9_A          149 ENVVIIGGGYIGIEMAEAFAAQ----GKNVTMIVRGERVLRRS-------------------------------------  187 (449)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSSSTTTTT-------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhC----CCeEEEEEcCCccchhh-------------------------------------
Confidence            4899999999999999999996    89999999987541000                                     


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                        +                               -..+...+.+.+++.  ++++.+++|.+++.               
T Consensus       188 --~-------------------------------~~~~~~~l~~~l~~~--v~i~~~~~v~~i~~---------------  217 (449)
T 3kd9_A          188 --F-------------------------------DKEVTDILEEKLKKH--VNLRLQEITMKIEG---------------  217 (449)
T ss_dssp             --S-------------------------------CHHHHHHHHHHHTTT--SEEEESCCEEEEEC---------------
T ss_pred             --c-------------------------------CHHHHHHHHHHHHhC--cEEEeCCeEEEEec---------------
Confidence              0                               023445566666654  89999999999964               


Q ss_pred             ccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200          216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR  249 (515)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~  249 (515)
                           .+ .+...+.+++++.+|.||.|.|....
T Consensus       218 -----~~-~v~~v~~~g~~i~~D~Vv~a~G~~p~  245 (449)
T 3kd9_A          218 -----EE-RVEKVVTDAGEYKAELVILATGIKPN  245 (449)
T ss_dssp             -----SS-SCCEEEETTEEEECSEEEECSCEEEC
T ss_pred             -----cC-cEEEEEeCCCEEECCEEEEeeCCccC
Confidence                 11 23333456778999999999998643

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=97.51  E-value=0.00053  Score=66.44  Aligned_cols=35  Identities=31%  Similarity=0.446  Sum_probs=31.2

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      .+|+|||||+.|+-+|..|++.    |.+|+++++.+.+
T Consensus       156 ~~v~viG~G~~g~e~a~~l~~~----g~~V~~i~~~~~~  190 (319)
T 3cty_A          156 KRVVTIGGGNSGAIAAISMSEY----VKNVTIIEYMPKY  190 (319)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTT----BSEEEEECSSSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhh----CCcEEEEEcCCcc
Confidence            5799999999999999999996    8999999987633

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.51  E-value=0.00012  Score=79.02  Aligned_cols=38  Identities=29%  Similarity=0.470  Sum_probs=34.6

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ...+||+||||||||+++|..|++.    |++|+|||+.+.+
T Consensus       371 ~~~~~vvIIGgG~AGl~aA~~l~~~----g~~V~lie~~~~~  408 (671)
T 1ps9_A          371 VQKKNLAVVGAGPAGLAFAINAAAR----GHQVTLFDAHSEI  408 (671)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTT----TCEEEEEESSSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhC----CCeEEEEeCCCCC
Confidence            4468999999999999999999996    9999999998865

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.50  E-value=8.1e-05  Score=80.99  Aligned_cols=38  Identities=24%  Similarity=0.343  Sum_probs=34.6

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ...+||+||||||||+++|+.|++.    |++|+|||+.+.+
T Consensus       387 ~~~~~VvIIGgGpAGl~aA~~L~~~----G~~Vtlie~~~~~  424 (729)
T 1o94_A          387 KNKDSVLIVGAGPSGSEAARVLMES----GYTVHLTDTAEKI  424 (729)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSST
T ss_pred             cCCceEEEECCCHHHHHHHHHHHHC----CCeEEEEeCCCCc
Confidence            4568999999999999999999996    9999999998865

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.48  E-value=0.00024  Score=73.69  Aligned_cols=55  Identities=27%  Similarity=0.249  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCc----EEEeeEEEEecCCC
Q 010200          172 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT----SLYAKLVVGADGGK  247 (515)
Q Consensus       172 ~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~----~~~ad~vV~AdG~~  247 (515)
                      .+.+.+.+.+++.| |+|+.+++|++++.                    +........+||+    ++.+|+||.|.|..
T Consensus       273 ~~~~~~~~~L~~~G-V~v~~~~~v~~v~~--------------------~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~  331 (502)
T 4g6h_A          273 KLSSYAQSHLENTS-IKVHLRTAVAKVEE--------------------KQLLAKTKHEDGKITEETIPYGTLIWATGNK  331 (502)
T ss_dssp             HHHHHHHHHHHHTT-CEEETTEEEEEECS--------------------SEEEEEEECTTSCEEEEEEECSEEEECCCEE
T ss_pred             HHHHHHHHHHHhcc-eeeecCceEEEEeC--------------------CceEEEEEecCcccceeeeccCEEEEccCCc
Confidence            45566777788888 99999999999954                    2223344556664    69999999999964

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=97.47  E-value=9.4e-05  Score=79.56  Aligned_cols=40  Identities=25%  Similarity=0.507  Sum_probs=35.8

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK   96 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~   96 (515)
                      ...+||+|||||++||++|+.|++.    |++|+|||+.+.++.
T Consensus       105 ~~~~~v~viG~G~~gl~~a~~l~~~----g~~v~~~e~~~~~gg  144 (662)
T 2z3y_A          105 KKTGKVIIIGSGVSGLAAARQLQSF----GMDVTLLEARDRVGG  144 (662)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHT----TCEEEEECSSSSSBT
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHC----CCeEEEEecCCCCCC
Confidence            4568999999999999999999996    999999999987653

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.47  E-value=0.00033  Score=72.47  Aligned_cols=99  Identities=17%  Similarity=0.161  Sum_probs=72.1

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      .-+|+|||||+.|+-+|..|++.    |.+|+|+++.....                                       
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~----g~~Vtlv~~~~~l~---------------------------------------  221 (488)
T 3dgz_A          185 PGKTLVVGASYVALECAGFLTGI----GLDTTVMMRSIPLR---------------------------------------  221 (488)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT----TCCEEEEESSCSST---------------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCceEEEEcCcccc---------------------------------------
Confidence            34799999999999999999996    89999999864220                                       


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                        .+                               -.++.+.+.+.+++.| +++++++++.+++..             
T Consensus       222 --~~-------------------------------d~~~~~~l~~~l~~~g-v~~~~~~~v~~i~~~-------------  254 (488)
T 3dgz_A          222 --GF-------------------------------DQQMSSLVTEHMESHG-TQFLKGCVPSHIKKL-------------  254 (488)
T ss_dssp             --TS-------------------------------CHHHHHHHHHHHHHTT-CEEEETEEEEEEEEC-------------
T ss_pred             --cC-------------------------------CHHHHHHHHHHHHHCC-CEEEeCCEEEEEEEc-------------
Confidence              00                               0124455667777777 999999999999750             


Q ss_pred             cccccccCCeeEEEcCC---Cc--EEEeeEEEEecCCCch
Q 010200          215 ATTLFTKGHLAKLDLSD---GT--SLYAKLVVGADGGKSR  249 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~---g~--~~~ad~vV~AdG~~S~  249 (515)
                            .+..+.+.+.+   |+  ++.+|.||.|.|....
T Consensus       255 ------~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~  288 (488)
T 3dgz_A          255 ------PTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPE  288 (488)
T ss_dssp             ------TTSCEEEEEEETTTTEEEEEEESEEEECSCEEES
T ss_pred             ------CCCcEEEEEEeCCCCeeEEEECCEEEEcccCCcc
Confidence                  12335555543   54  5799999999997544

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.46  E-value=0.00059  Score=65.71  Aligned_cols=35  Identities=34%  Similarity=0.564  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      -+|+|||+|++|+-+|..|++.    |.+|+++++.+.+
T Consensus       145 ~~v~VvG~G~~g~e~A~~l~~~----g~~Vtlv~~~~~~  179 (310)
T 1fl2_A          145 KRVAVIGGGNSGVEAAIDLAGI----VEHVTLLEFAPEM  179 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT----BSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHh----CCEEEEEEeCccc
Confidence            5799999999999999999996    8999999987743

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.44  E-value=0.00043  Score=71.14  Aligned_cols=98  Identities=21%  Similarity=0.326  Sum_probs=72.0

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      .-+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.          ..     .            +        
T Consensus       172 ~~~vvViGgG~~g~e~A~~l~~~----g~~Vtlv~~~~~~l----------~~-----~------------~--------  212 (466)
T 3l8k_A          172 PQDMVIIGAGYIGLEIASIFRLM----GVQTHIIEMLDRAL----------IT-----L------------E--------  212 (466)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSSC----------TT-----S------------C--------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCEEEEEEeCCcCC----------CC-----C------------C--------
Confidence            45799999999999999999996    89999999987541          00     0            0        


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                                                         -.++.+.+.+.++    ++++.+++|++++.              
T Consensus       213 -----------------------------------d~~~~~~l~~~l~----v~i~~~~~v~~i~~--------------  239 (466)
T 3l8k_A          213 -----------------------------------DQDIVNTLLSILK----LNIKFNSPVTEVKK--------------  239 (466)
T ss_dssp             -----------------------------------CHHHHHHHHHHHC----CCEECSCCEEEEEE--------------
T ss_pred             -----------------------------------CHHHHHHHHhcCE----EEEEECCEEEEEEE--------------
Confidence                                               0122233444443    78999999999975              


Q ss_pred             cccccccC-CeeEEEcC--CCc--EEEeeEEEEecCCCchh
Q 010200          215 ATTLFTKG-HLAKLDLS--DGT--SLYAKLVVGADGGKSRV  250 (515)
Q Consensus       215 ~~~~~~~~-~~~~v~~~--~g~--~~~ad~vV~AdG~~S~v  250 (515)
                            .+ +.+.+.+.  +|+  ++.+|.||.|.|.....
T Consensus       240 ------~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G~~p~~  274 (466)
T 3l8k_A          240 ------IKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVI  274 (466)
T ss_dssp             ------EETTEEEEEECCTTSCCEEEEESCEEECCCEEECC
T ss_pred             ------cCCCcEEEEEEecCCceEEEEcCEEEECcCCCccc
Confidence                  22 45677777  665  79999999999986554

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=97.44  E-value=0.00012  Score=80.35  Aligned_cols=40  Identities=25%  Similarity=0.507  Sum_probs=35.8

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK   96 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~   96 (515)
                      ....+|+|||||++||++|+.|++.    |++|+|||+...++.
T Consensus       276 ~~~~~v~viG~G~aGl~~A~~l~~~----g~~v~v~E~~~~~GG  315 (852)
T 2xag_A          276 KKTGKVIIIGSGVSGLAAARQLQSF----GMDVTLLEARDRVGG  315 (852)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSSCT
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHC----CCcEEEEEecCcCCC
Confidence            3467999999999999999999996    999999999987753

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=97.43  E-value=8.9e-05  Score=78.05  Aligned_cols=37  Identities=30%  Similarity=0.558  Sum_probs=33.8

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ...||+||||||.||+++|..|++.   ++.+|+|||+++
T Consensus        17 ~~~yDyIIVGgG~AG~vlA~RLse~---~~~~VLlLEaG~   53 (583)
T 3qvp_A           17 GRTVDYIIAGGGLTGLTTAARLTEN---PNISVLVIESGS   53 (583)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHTTS---TTCCEEEECSSC
T ss_pred             CCCccEEEECCcHHHHHHHHHHHhC---CCCcEEEEecCC
Confidence            3569999999999999999999986   489999999988

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=97.39  E-value=0.00097  Score=64.17  Aligned_cols=36  Identities=28%  Similarity=0.414  Sum_probs=32.0

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ..+|+|||+|+.|+-+|..|++.    |.+|+++++.+.+
T Consensus       147 ~~~v~viG~g~~~~e~a~~l~~~----g~~v~~~~~~~~~  182 (315)
T 3r9u_A          147 NKEVAVLGGGDTALEEALYLANI----CSKIYLIHRRDEF  182 (315)
T ss_dssp             TSEEEEECCBHHHHHHHHHHHTT----SSEEEEECSSSSC
T ss_pred             cCEEEEECCCHHHHHHHHHHHhh----CCEEEEEEeCCCC
Confidence            35799999999999999999996    8999999987743

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=97.36  E-value=0.00014  Score=76.63  Aligned_cols=37  Identities=30%  Similarity=0.579  Sum_probs=33.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ..||+||||||.||+++|..|++.   .+.+|+|||+.+.
T Consensus         5 ~~yDyIVVGgG~AG~v~A~rLse~---~~~~VLllEaG~~   41 (577)
T 3q9t_A            5 SHFDFVIVGGGTAGNTVAGRLAEN---PNVTVLIVEAGIG   41 (577)
T ss_dssp             CEEEEEEESCSHHHHHHHHHHTTS---TTSCEEEECSSCS
T ss_pred             CcccEEEECCcHHHHHHHHHHHhC---CCCcEEEEecCCC
Confidence            469999999999999999999997   2489999999886

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.35  E-value=0.00089  Score=65.17  Aligned_cols=36  Identities=33%  Similarity=0.360  Sum_probs=32.1

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      .-+|+|||||..|+-+|..|++.    |.+|+++++.+.+
T Consensus       159 ~~~v~VvG~G~~g~e~A~~l~~~----g~~V~lv~~~~~~  194 (333)
T 1vdc_A          159 NKPLAVIGGGDSAMEEANFLTKY----GSKVYIIHRRDAF  194 (333)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTT----SSEEEEECSSSSC
T ss_pred             CCeEEEECCChHHHHHHHHHHhc----CCeEEEEecCCcC
Confidence            45799999999999999999996    8999999988743

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=97.30  E-value=0.00097  Score=64.37  Aligned_cols=36  Identities=31%  Similarity=0.341  Sum_probs=32.3

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ..+|+|||+|+.|+-+|..|++.    |.+|+++++.+.+
T Consensus       154 ~~~v~vvG~G~~~~e~a~~l~~~----g~~v~~~~~~~~~  189 (323)
T 3f8d_A          154 NRVVAVIGGGDSALEGAEILSSY----STKVYLIHRRDTF  189 (323)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHH----SSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHh----CCeEEEEEeCCCC
Confidence            35799999999999999999996    8999999988754

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.28  E-value=0.00015  Score=74.35  Aligned_cols=39  Identities=23%  Similarity=0.259  Sum_probs=33.1

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      .++||+||||||+|+.+|..|++.+  ++++|+|||+.+.+
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g--~~~~V~vie~~~~~   43 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHH--SRAHVDIYEKQLVP   43 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHC--SSCEEEEECSSSSS
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcC--CCCCEEEEeCCCcC
Confidence            3579999999999999999999961  12999999998865

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=97.27  E-value=0.00099  Score=69.77  Aligned_cols=35  Identities=20%  Similarity=0.323  Sum_probs=32.3

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ..+|+|||+|.+|+-+|..|++.    +.+|+|++|.+.
T Consensus       185 ~krV~VIG~G~tgve~a~~la~~----~~~Vtv~~r~~~  219 (545)
T 3uox_A          185 GKRVGVIGTGATGVQIIPIAAET----AKELYVFQRTPN  219 (545)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTT----BSEEEEEESSCC
T ss_pred             CCeEEEECCCccHHHHHHHHHhh----CCEEEEEEcCCC
Confidence            45899999999999999999996    899999999985

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=97.26  E-value=0.00069  Score=64.59  Aligned_cols=33  Identities=12%  Similarity=0.139  Sum_probs=29.6

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ..+|+|||+|+.|+-+|..|++.    | +|+++++..
T Consensus       141 ~~~v~vvG~G~~~~e~a~~l~~~----g-~v~~v~~~~  173 (297)
T 3fbs_A          141 QGKIGVIAASPMAIHHALMLPDW----G-ETTFFTNGI  173 (297)
T ss_dssp             TCEEEEECCSTTHHHHHHHGGGT----S-EEEEECTTT
T ss_pred             CCEEEEEecCccHHHHHHHhhhc----C-cEEEEECCC
Confidence            45899999999999999999996    8 999998665

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.24  E-value=0.00012  Score=75.14  Aligned_cols=39  Identities=26%  Similarity=0.419  Sum_probs=33.4

Q ss_pred             CCccEEEECCCHHHHHHHHHHhc-CCCCC----CcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLAS-MPLTK----HLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~-~~~~~----G~~V~v~E~~~~~   94 (515)
                      .++||+||||||+|+++|..|++ ..  +    |++|+|||+.+.+
T Consensus         2 ~~~~VvIIG~G~aGl~aA~~L~~~~~--~~~~~g~~V~lie~~~~~   45 (456)
T 1lqt_A            2 RPYYIAIVGSGPSAFFAAASLLKAAD--TTEDLDMAVDMLEMLPTP   45 (456)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHH--HSTTCCEEEEEEESSSSC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhCc--cccCCCCeEEEEecCCCC
Confidence            35899999999999999999988 41  2    7999999998755

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=97.24  E-value=0.00013  Score=76.50  Aligned_cols=37  Identities=30%  Similarity=0.609  Sum_probs=33.3

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ...||+||||||.||+.+|..|++     |.+|+|+|+++..
T Consensus        24 ~~~yD~IIVGsG~AG~v~A~rLse-----g~~VlvLEaG~~~   60 (536)
T 1ju2_A           24 EGSYDYVIVGGGTSGCPLAATLSE-----KYKVLVLERGSLP   60 (536)
T ss_dssp             EEEEEEEEECCSTTHHHHHHHHTT-----TSCEEEECSSBCG
T ss_pred             cCcccEEEECccHHHHHHHHHHhc-----CCcEEEEecCCCc
Confidence            356999999999999999999999     6899999999754

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=97.23  E-value=0.0011  Score=64.29  Aligned_cols=36  Identities=28%  Similarity=0.391  Sum_probs=31.9

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ..+|+|||+|+.|+-+|..|++.    |.+|+++++.+.+
T Consensus       154 ~~~v~vvG~g~~~~e~a~~l~~~----~~~v~~~~~~~~~  189 (332)
T 3lzw_A          154 GRRVAILGGGDSAVDWALMLEPI----AKEVSIIHRRDKF  189 (332)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTT----BSEEEEECSSSSC
T ss_pred             CCEEEEECCCHhHHHHHHHHHhh----CCeEEEEEecCcC
Confidence            35799999999999999999996    8999999987643

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=97.22  E-value=0.0017  Score=67.92  Aligned_cols=35  Identities=26%  Similarity=0.356  Sum_probs=32.4

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ..+|+|||+|.+|+-+|..|++.    |.+|+|++|.+.
T Consensus       178 ~krV~VIG~G~sgve~a~~l~~~----~~~Vtv~~r~~~  212 (540)
T 3gwf_A          178 GRRVGVIGTGSTGQQVITSLAPE----VEHLTVFVRTPQ  212 (540)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTT----CSEEEEEESSCC
T ss_pred             cceEEEECCCchHHHHHHHHHhh----CCEEEEEECCCC
Confidence            45899999999999999999996    899999999986

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=97.21  E-value=0.0013  Score=64.27  Aligned_cols=36  Identities=31%  Similarity=0.461  Sum_probs=31.8

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ..+|+|||+|+.|+-+|..|++.    |.+|+++++.+.+
T Consensus       155 ~~~v~ViG~G~~g~e~a~~l~~~----g~~V~l~~~~~~~  190 (335)
T 2a87_A          155 DQDIAVIGGGDSAMEEATFLTRF----ARSVTLVHRRDEF  190 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTT----CSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHh----CCeEEEEEcCCcC
Confidence            45799999999999999999996    8999999987643

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.19  E-value=0.0011  Score=69.11  Aligned_cols=32  Identities=28%  Similarity=0.335  Sum_probs=29.5

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN   91 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~   91 (515)
                      -+|+|||||..|+-+|..|++.    |.+|+|+++.
T Consensus       211 ~~vvVIGgG~ig~E~A~~l~~~----G~~Vtlv~~~  242 (519)
T 3qfa_A          211 GKTLVVGASYVALECAGFLAGI----GLDVTVMVRS  242 (519)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT----TCCEEEEESS
T ss_pred             CeEEEECCcHHHHHHHHHHHHc----CCeEEEEecc
Confidence            4699999999999999999996    8999999985

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=97.18  E-value=0.00017  Score=75.80  Aligned_cols=37  Identities=27%  Similarity=0.454  Sum_probs=33.6

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      .||+||||||.||+.+|..|++.   +|.+|+|+|+++..
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~---~~~~VlllEaG~~~   38 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTED---PDVSVLVLEAGVSD   38 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTS---TTCCEEEECSSBCC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhC---cCCcEEEEecCCcc
Confidence            58999999999999999999985   48999999998754

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.17  E-value=0.0013  Score=69.76  Aligned_cols=32  Identities=25%  Similarity=0.266  Sum_probs=29.8

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN   91 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~   91 (515)
                      -+|+|||||..|+-+|..|++.    |.+|+|+++.
T Consensus       287 ~~vvViGgG~~g~E~A~~l~~~----g~~Vtlv~~~  318 (598)
T 2x8g_A          287 GKTLVIGASYVALECAGFLASL----GGDVTVMVRS  318 (598)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT----TCCEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHHc----CCEEEEEECC
Confidence            4799999999999999999996    8999999987

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.17  E-value=0.00022  Score=80.42  Aligned_cols=37  Identities=19%  Similarity=0.342  Sum_probs=33.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~~   94 (515)
                      ..+||+||||||||+++|+.|++.    |+ +|+|||+.+.+
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~~----G~~~Vtv~E~~~~~  223 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLARL----GYSDITIFEKQEYV  223 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHT----TCCCEEEEESSSSC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhc----CCCcEEEEeCCCCC
Confidence            357999999999999999999996    88 79999998755

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=97.11  E-value=0.00021  Score=76.51  Aligned_cols=36  Identities=33%  Similarity=0.719  Sum_probs=33.1

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCC--------cEEEEEcCCC-CC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKH--------LSVAIIDSNP-AL   94 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G--------~~V~v~E~~~-~~   94 (515)
                      ..+|+|||||++||++|+.|++.    |        ++|+|||+.+ .+
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~----g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRL----AATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHH----HTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CcccccCCCceEEEEeccCccc
Confidence            47899999999999999999986    6        9999999998 66

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=97.07  E-value=0.00052  Score=72.58  Aligned_cols=39  Identities=26%  Similarity=0.522  Sum_probs=34.6

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      +..+|+||||||++|+++|..|++.   .|.+|+|+|++...
T Consensus        22 ~~~~d~iivG~G~~g~~~a~~l~~~---~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           22 GKTYDYIIAGGGLTGLTVAAKLTEN---PKIKVLVIEKGFYE   60 (587)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHTS---TTCCEEEEESSCCC
T ss_pred             cccCCEEEECcCHHHHHHHHHHHhC---CCCcEEEEecCCcc
Confidence            3569999999999999999999994   38999999998754

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=97.01  E-value=0.00052  Score=71.99  Aligned_cols=38  Identities=37%  Similarity=0.628  Sum_probs=34.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ..+|++|||||++|+++|..|++.   +|.+|+|+|++...
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~---~~~~v~~~e~g~~~   49 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSED---PAVSVALVEAGPDD   49 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTS---TTSCEEEECSSCCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhC---CCCCEEEEecCCcC
Confidence            469999999999999999999996   38999999998654

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=97.00  E-value=0.00037  Score=72.40  Aligned_cols=36  Identities=14%  Similarity=0.182  Sum_probs=33.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ..+||+|||+|++|+++|..|++.    |++|+|+|++..
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~~----~~~v~~~e~~~~   39 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGEA----GVQTLMLEMGQL   39 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT----TCCEEEEESSCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhC----CCcEEEEeCCCC
Confidence            468999999999999999999995    899999999874

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=96.99  E-value=0.00044  Score=71.82  Aligned_cols=37  Identities=22%  Similarity=0.364  Sum_probs=33.6

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ...+|++|||+|++|+++|..|++.    |.+|+|+|++..
T Consensus         9 ~~~~d~~iiG~G~~g~~~a~~l~~~----~~~v~~~e~~~~   45 (507)
T 1coy_A            9 GDRVPALVIGSGYGGAVAALRLTQA----GIPTQIVEMGRS   45 (507)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHT----TCCEEEECSSCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHC----CCcEEEEECCCC
Confidence            3569999999999999999999995    999999999864

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=96.92  E-value=0.0032  Score=65.50  Aligned_cols=36  Identities=33%  Similarity=0.540  Sum_probs=31.8

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      .-+|+|||||.+|+-+|..|++.    |.+|+++++.+.+
T Consensus       355 ~k~V~ViGgG~~g~E~A~~L~~~----g~~Vtlv~~~~~l  390 (521)
T 1hyu_A          355 GKRVAVIGGGNSGVEAAIDLAGI----VEHVTLLEFAPEM  390 (521)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHH----BSEEEEECSSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhh----CCEEEEEEeCccc
Confidence            35799999999999999999996    8999999987643

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=96.87  E-value=0.00074  Score=67.50  Aligned_cols=35  Identities=20%  Similarity=0.237  Sum_probs=32.2

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      .+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+
T Consensus       147 ~~vvVIGgG~~g~E~A~~l~~~----g~~Vtvv~~~~~~  181 (385)
T 3klj_A          147 GKAFIIGGGILGIELAQAIIDS----GTPASIGIILEYP  181 (385)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHH----TCCEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhC----CCeEEEEEcCCcc
Confidence            4799999999999999999996    8999999998865

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=96.80  E-value=0.0045  Score=63.29  Aligned_cols=36  Identities=22%  Similarity=0.296  Sum_probs=30.9

Q ss_pred             CccEEEECCCHHHHHHHHHHh--------------------cCCCCCCc-EEEEEcCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLA--------------------SMPLTKHL-SVAIIDSNPAL   94 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~--------------------~~~~~~G~-~V~v~E~~~~~   94 (515)
                      .-+|+|||||..|+-+|..|+                    +.    |. +|+|++++...
T Consensus       145 ~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~----g~~~V~lv~r~~~~  201 (460)
T 1cjc_A          145 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQS----RVKTVWIVGRRGPL  201 (460)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTC----CCCEEEEECSSCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhC----CCcEEEEEEcCChH
Confidence            458999999999999999999                    43    66 79999998754

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=96.63  E-value=0.0026  Score=64.80  Aligned_cols=34  Identities=21%  Similarity=0.102  Sum_probs=30.6

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcE-EEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLS-VAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~-V~v~E~~~   92 (515)
                      .-+|+|||||.+|+=+|..|++.    |.+ |+|+++.+
T Consensus       212 ~k~VvVvG~G~sg~e~A~~l~~~----~~~~V~l~~r~~  246 (447)
T 2gv8_A          212 GESVLVVGGASSANDLVRHLTPV----AKHPIYQSLLGG  246 (447)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTT----SCSSEEEECTTC
T ss_pred             CCEEEEEccCcCHHHHHHHHHHH----hCCcEEEEeCCC
Confidence            35799999999999999999997    788 99999875

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=96.62  E-value=0.0063  Score=65.47  Aligned_cols=50  Identities=14%  Similarity=0.001  Sum_probs=37.5

Q ss_pred             HHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCC--cEEEeeEEEEecCCCc
Q 010200          175 SSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG--TSLYAKLVVGADGGKS  248 (515)
Q Consensus       175 ~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g--~~~~ad~vV~AdG~~S  248 (515)
                      ..+.+.+++.| ++++.+++|++++.                      +.+++. .+|  +++.+|.||.|.|...
T Consensus       577 ~~~~~~l~~~G-V~v~~~~~v~~i~~----------------------~~v~~~-~~G~~~~i~~D~Vi~a~G~~p  628 (671)
T 1ps9_A          577 WIHRTTLLSRG-VKMIPGVSYQKIDD----------------------DGLHVV-INGETQVLAVDNVVICAGQEP  628 (671)
T ss_dssp             HHHHHHHHHTT-CEEECSCEEEEEET----------------------TEEEEE-ETTEEEEECCSEEEECCCEEE
T ss_pred             HHHHHHHHhcC-CEEEeCcEEEEEeC----------------------CeEEEe-cCCeEEEEeCCEEEECCCccc
Confidence            34556666777 99999999999853                      345554 566  5799999999999653

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=96.61  E-value=0.0038  Score=65.33  Aligned_cols=35  Identities=17%  Similarity=0.230  Sum_probs=32.2

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ..+|+|||+|.+|+-+|..|++.    |.+|+|++|.+.
T Consensus       191 ~krV~VIG~G~sgve~a~~l~~~----~~~Vtv~~r~~~  225 (549)
T 4ap3_A          191 GKRVGVIGTGSSGIQSIPIIAEQ----AEQLFVFQRSAN  225 (549)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHH----BSEEEEEESSCC
T ss_pred             CCEEEEECCCchHHHHHHHHHhh----CCEEEEEECCCC
Confidence            45899999999999999999996    899999999985

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=96.56  E-value=0.005  Score=63.06  Aligned_cols=36  Identities=14%  Similarity=0.027  Sum_probs=32.1

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      .-+|+|||||.+|+=+|..|++.    |.+|+|+++.+.+
T Consensus       197 ~k~VvVVG~G~sg~eiA~~l~~~----g~~V~li~~~~~~  232 (464)
T 2xve_A          197 DKTVLLVGSSYSAEDIGSQCYKY----GAKKLISCYRTAP  232 (464)
T ss_dssp             TSEEEEECCSTTHHHHHHHHHHT----TCSEEEEECSSCC
T ss_pred             CCEEEEEcCCCCHHHHHHHHHHh----CCeEEEEEECCCC
Confidence            35799999999999999999996    8999999987643

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=96.55  E-value=0.0048  Score=67.00  Aligned_cols=35  Identities=23%  Similarity=0.221  Sum_probs=31.7

Q ss_pred             CccEEEEC--CCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           55 QYDVAVVG--GGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        55 ~~dVvIVG--gG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ..+|+|||  ||..|+-+|..|++.    |.+|+|+++.+ +
T Consensus       528 gk~VvVIG~GgG~~g~e~A~~l~~~----G~~Vtlv~~~~-l  564 (729)
T 1o94_A          528 GKRVVILNADTYFMAPSLAEKLATA----GHEVTIVSGVH-L  564 (729)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHT----TCEEEEEESSC-T
T ss_pred             CCeEEEEcCCCCchHHHHHHHHHHc----CCEEEEEeccc-c
Confidence            35799998  999999999999996    89999999987 5

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=96.55  E-value=0.005  Score=62.87  Aligned_cols=40  Identities=25%  Similarity=0.331  Sum_probs=30.7

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCC----------------CCC-cEEEEEcCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPL----------------TKH-LSVAIIDSNPAL   94 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~----------------~~G-~~V~v~E~~~~~   94 (515)
                      .-+|+|||+|.+|+-+|..|++.+.                ..| .+|+|++++...
T Consensus       147 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~  203 (456)
T 1lqt_A          147 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPL  203 (456)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChh
Confidence            4579999999999999999987200                014 489999998754

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=96.53  E-value=0.0021  Score=67.89  Aligned_cols=41  Identities=24%  Similarity=0.345  Sum_probs=37.2

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCC
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK   96 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~   96 (515)
                      ++.+|||+|||+|+.|..+|..|++.    |.+|+++||++..+.
T Consensus         5 ~~~~~D~~i~GtGl~~~~~a~~~~~~----g~~vl~id~~~~~gg   45 (650)
T 1vg0_A            5 LPSDFDVIVIGTGLPESIIAAACSRS----GQRVLHVDSRSYYGG   45 (650)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSSCG
T ss_pred             CCCcCCEEEECCcHHHHHHHHHHHhC----CCEEEEEcCCCcccC
Confidence            44579999999999999999999996    999999999998863

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=96.26  E-value=0.0057  Score=68.47  Aligned_cols=35  Identities=26%  Similarity=0.254  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      -+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+
T Consensus       285 k~vvViGgG~~g~E~A~~L~~~----G~~Vtvv~~~~~~  319 (965)
T 2gag_A          285 ARIAVATTNDSAYELVRELAAT----GGVVAVIDARSSI  319 (965)
T ss_dssp             SSEEEEESSTTHHHHHHHHGGG----TCCSEEEESCSSC
T ss_pred             CeEEEEcCCHHHHHHHHHHHHc----CCcEEEEECCCcc
Confidence            4799999999999999999996    8889999998744

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=95.90  E-value=0.013  Score=59.85  Aligned_cols=36  Identities=22%  Similarity=0.189  Sum_probs=31.0

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPAL   94 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~~   94 (515)
                      .-+|+|||||.+|+-+|..+.+.    |. +|+++++++..
T Consensus       264 gk~VvVIGgG~~a~d~A~~~~r~----Ga~~Vtiv~r~~~~  300 (456)
T 2vdc_G          264 GKHVVVLGGGDTAMDCVRTAIRQ----GATSVKCLYRRDRK  300 (456)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHT----TCSEEEEECSSCST
T ss_pred             CCEEEEECCChhHHHHHHHHHHc----CCCEEEEEEeCCcc
Confidence            45899999999999999999986    66 69999988743

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=95.81  E-value=0.0084  Score=50.30  Aligned_cols=36  Identities=22%  Similarity=0.310  Sum_probs=32.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      .+-.|+|||+|..|..+|..|.+.    |++|+++|+++.
T Consensus         6 ~~~~viIiG~G~~G~~la~~L~~~----g~~v~vid~~~~   41 (140)
T 3fwz_A            6 ICNHALLVGYGRVGSLLGEKLLAS----DIPLVVIETSRT   41 (140)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHT----TCCEEEEESCHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC----CCCEEEEECCHH
Confidence            345799999999999999999996    999999999874

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=95.74  E-value=0.016  Score=56.44  Aligned_cols=33  Identities=21%  Similarity=0.448  Sum_probs=29.5

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ..+|+|||||.+|+-+|..|++.    | +|+++++..
T Consensus       163 ~~~v~VvG~G~~g~e~a~~l~~~----~-~v~~v~~~~  195 (357)
T 4a9w_A          163 GMRVAIIGGGNSGAQILAEVSTV----A-ETTWITQHE  195 (357)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTT----S-EEEEECSSC
T ss_pred             CCEEEEECCCcCHHHHHHHHHhh----C-CEEEEECCC
Confidence            35899999999999999999996    6 699999874

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=95.74  E-value=0.029  Score=56.16  Aligned_cols=51  Identities=10%  Similarity=0.055  Sum_probs=39.4

Q ss_pred             HHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCc
Q 010200          173 LHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKS  248 (515)
Q Consensus       173 l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S  248 (515)
                      +...+.+.+++.| ++++++++|++++.                      ..  +.+++|+++.+|+||.|.|...
T Consensus       220 ~~~~~~~~l~~~g-V~~~~~~~v~~i~~----------------------~~--v~~~~g~~~~~D~vi~a~G~~~  270 (409)
T 3h8l_A          220 SRKAVASIYNQLG-IKLVHNFKIKEIRE----------------------HE--IVDEKGNTIPADITILLPPYTG  270 (409)
T ss_dssp             HHHHHHHHHHHHT-CEEECSCCEEEECS----------------------SE--EEETTSCEEECSEEEEECCEEC
T ss_pred             HHHHHHHHHHHCC-CEEEcCCceEEECC----------------------Ce--EEECCCCEEeeeEEEECCCCCc
Confidence            3345556666667 99999999999954                      22  6678899999999999999643

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=95.66  E-value=0.011  Score=50.56  Aligned_cols=36  Identities=25%  Similarity=0.316  Sum_probs=32.1

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ....|+|||+|..|..+|..|++.    |++|+++|+++.
T Consensus        18 ~~~~v~IiG~G~iG~~la~~L~~~----g~~V~vid~~~~   53 (155)
T 2g1u_A           18 KSKYIVIFGCGRLGSLIANLASSS----GHSVVVVDKNEY   53 (155)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT----TCEEEEEESCGG
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhC----CCeEEEEECCHH
Confidence            346899999999999999999996    899999999764

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=95.46  E-value=0.056  Score=60.89  Aligned_cols=33  Identities=21%  Similarity=0.141  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~   92 (515)
                      -+|+|||||..|+-+|..|++.    |. +|+|+++.+
T Consensus       333 ~~VvVIGgG~~g~e~A~~~~~~----G~~~Vtvv~r~~  366 (1025)
T 1gte_A          333 GAVIVLGAGDTAFDCATSALRC----GARRVFLVFRKG  366 (1025)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHT----TCSEEEEECSSC
T ss_pred             CcEEEECCChHHHHHHHHHHHc----CCCEEEEEEecC
Confidence            3899999999999999999996    75 899999886

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=95.19  E-value=0.019  Score=55.12  Aligned_cols=35  Identities=23%  Similarity=0.310  Sum_probs=32.1

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      -+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+
T Consensus       146 k~vvViGgG~ig~E~A~~l~~~----g~~Vtlv~~~~~~  180 (312)
T 4gcm_A          146 KRLFVIGGGDSAVEEGTFLTKF----ADKVTIVHRRDEL  180 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTT----CSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhc----CCEEEEEeccccc
Confidence            4799999999999999999996    8999999998755

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.18  E-value=0.018  Score=47.71  Aligned_cols=33  Identities=30%  Similarity=0.418  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ++|+|||+|..|..+|..|.+.    |++|+++|+++
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~----g~~v~~~d~~~   37 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEK----GHDIVLIDIDK   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC----CCeEEEEECCH
Confidence            5799999999999999999996    89999999865

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=94.87  E-value=0.041  Score=55.65  Aligned_cols=50  Identities=10%  Similarity=-0.013  Sum_probs=35.6

Q ss_pred             HHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEc--CC-----CcEEEeeEEEEecCCC
Q 010200          175 SSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL--SD-----GTSLYAKLVVGADGGK  247 (515)
Q Consensus       175 ~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~-----g~~~~ad~vV~AdG~~  247 (515)
                      ..+.+.+++.| ++++++++|++++.                      +.+.+..  .+     +.++.+|+||.|.|..
T Consensus       212 ~~~~~~l~~~g-I~~~~~~~v~~v~~----------------------~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~  268 (437)
T 3sx6_A          212 GILTKGLKEEG-IEAYTNCKVTKVED----------------------NKMYVTQVDEKGETIKEMVLPVKFGMMIPAFK  268 (437)
T ss_dssp             HHHHHHHHHTT-CEEECSEEEEEEET----------------------TEEEEEEECTTSCEEEEEEEECSEEEEECCEE
T ss_pred             HHHHHHHHHCC-CEEEcCCEEEEEEC----------------------CeEEEEecccCCccccceEEEEeEEEEcCCCc
Confidence            44556666777 99999999999964                      2344332  33     4578999999998843

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=94.87  E-value=0.027  Score=47.87  Aligned_cols=34  Identities=18%  Similarity=0.278  Sum_probs=30.8

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      +..|+|+|+|..|..+|..|.+.    |++|+++|+++
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~----g~~V~vid~~~   36 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQR----GQNVTVISNLP   36 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHT----TCCEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHC----CCCEEEEECCC
Confidence            45799999999999999999996    89999999974

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=94.87  E-value=0.03  Score=44.81  Aligned_cols=33  Identities=30%  Similarity=0.576  Sum_probs=30.2

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCC-cEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G-~~V~v~E~~~   92 (515)
                      .+|+|+|+|..|..++..|.+.    | ++|.++++++
T Consensus         6 ~~v~I~G~G~iG~~~~~~l~~~----g~~~v~~~~r~~   39 (118)
T 3ic5_A            6 WNICVVGAGKIGQMIAALLKTS----SNYSVTVADHDL   39 (118)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHC----SSEEEEEEESCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhC----CCceEEEEeCCH
Confidence            5799999999999999999996    7 9999999875

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=94.62  E-value=0.015  Score=60.75  Aligned_cols=36  Identities=19%  Similarity=0.391  Sum_probs=31.9

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ..+|+|||+|.+|+-+|..|++.    |.+|++++|.+..
T Consensus       186 gk~V~VIG~G~sg~e~a~~l~~~----~~~vtv~~r~~~~  221 (542)
T 1w4x_A          186 GQRVGVIGTGSSGIQVSPQIAKQ----AAELFVFQRTPHF  221 (542)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHH----BSEEEEEESSCCC
T ss_pred             CCEEEEECCCccHHHHHHHHhhc----CceEEEEEcCCcc
Confidence            45899999999999999999996    8899999987643

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=94.52  E-value=0.024  Score=47.32  Aligned_cols=34  Identities=24%  Similarity=0.420  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ..|+|+|+|..|..+|..|.+.    |++|+++|+++.
T Consensus         7 ~~v~I~G~G~iG~~la~~L~~~----g~~V~~id~~~~   40 (141)
T 3llv_A            7 YEYIVIGSEAAGVGLVRELTAA----GKKVLAVDKSKE   40 (141)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT----TCCEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHC----CCeEEEEECCHH
Confidence            4699999999999999999996    999999998763

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=94.38  E-value=0.044  Score=52.38  Aligned_cols=36  Identities=31%  Similarity=0.352  Sum_probs=32.2

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ..+|+|||||..|+-+|..|++.    |.+|+|+|+....
T Consensus       152 ~~~vvViGgG~ig~e~A~~l~~~----G~~Vt~v~~~~~~  187 (314)
T 4a5l_A          152 NKVLMVVGGGDAAMEEALHLTKY----GSKVIILHRRDAF  187 (314)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTT----SSEEEEECSSSSC
T ss_pred             CCeEEEECCChHHHHHHHHHHHh----CCeeeeecccccc
Confidence            35799999999999999999997    9999999987644

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=94.24  E-value=0.11  Score=53.57  Aligned_cols=37  Identities=22%  Similarity=0.345  Sum_probs=30.4

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ..+|+|||+|-+|.-.+..|++..  .+.+|+++=|.+.
T Consensus       246 gKrV~VVG~G~SA~ei~~~L~~~~--~~~~v~~~~R~~~  282 (501)
T 4b63_A          246 PYNIAVLGSGQSAAEIFHDLQKRY--PNSRTTLIMRDSA  282 (501)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHS--TTCEEEEECSSSS
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcC--CCceEEEEeCCCc
Confidence            357999999999999999998632  3689999988764

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=94.22  E-value=0.042  Score=53.90  Aligned_cols=38  Identities=26%  Similarity=0.266  Sum_probs=32.4

Q ss_pred             CCCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      +.+..++|.|||+|--|.++|..|++.    |++|+++++++
T Consensus        25 m~~~~mkI~VIGaG~mG~alA~~La~~----G~~V~l~~r~~   62 (356)
T 3k96_A           25 MEPFKHPIAILGAGSWGTALALVLARK----GQKVRLWSYES   62 (356)
T ss_dssp             --CCCSCEEEECCSHHHHHHHHHHHTT----TCCEEEECSCH
T ss_pred             ccccCCeEEEECccHHHHHHHHHHHHC----CCeEEEEeCCH
Confidence            334457899999999999999999996    89999999875

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=94.00  E-value=0.052  Score=51.90  Aligned_cols=34  Identities=29%  Similarity=0.541  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      .+|.|||+|.-|...|..|++.    |++|+++|+++.
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~----G~~V~~~d~~~~   49 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAAT----GHTVVLVDQTED   49 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC----CCeEEEEECCHH
Confidence            3699999999999999999996    999999998763

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=93.79  E-value=0.057  Score=52.41  Aligned_cols=36  Identities=28%  Similarity=0.413  Sum_probs=31.8

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~   93 (515)
                      +..+|+|||+|-.|.++|..|++.    |+ +|+++|++..
T Consensus         8 ~~~kI~VIGaG~vG~~lA~~la~~----g~~~V~L~D~~~~   44 (331)
T 1pzg_A            8 RRKKVAMIGSGMIGGTMGYLCALR----ELADVVLYDVVKG   44 (331)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHH----TCCEEEEECSSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC----CCCeEEEEECChh
Confidence            346899999999999999999985    77 9999999864

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=93.57  E-value=0.047  Score=55.59  Aligned_cols=36  Identities=25%  Similarity=0.470  Sum_probs=32.6

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ..++|+|+|+|-.|..+|..|...    |++|+|+|+++.
T Consensus         2 ~~M~iiI~G~G~vG~~la~~L~~~----~~~v~vId~d~~   37 (461)
T 4g65_A            2 NAMKIIILGAGQVGGTLAENLVGE----NNDITIVDKDGD   37 (461)
T ss_dssp             CCEEEEEECCSHHHHHHHHHTCST----TEEEEEEESCHH
T ss_pred             CcCEEEEECCCHHHHHHHHHHHHC----CCCEEEEECCHH
Confidence            357899999999999999999985    999999999864

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=93.41  E-value=0.042  Score=49.74  Aligned_cols=34  Identities=29%  Similarity=0.429  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ++|+|||+|..|..+|..|.+.    |++|+++|+++.
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~----g~~v~vid~~~~   34 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSR----KYGVVIINKDRE   34 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHT----TCCEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC----CCeEEEEECCHH
Confidence            3699999999999999999996    999999998764

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=93.34  E-value=0.25  Score=46.91  Aligned_cols=33  Identities=3%  Similarity=0.045  Sum_probs=25.2

Q ss_pred             ccEEEECCCH-HHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGGGM-VGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~-aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      .+++|||||. +++.+|..+++.    |.+|+|+++..
T Consensus       147 ~~~~VIggG~~~~~e~a~~~~~~----~~~v~i~~~~~  180 (304)
T 4fk1_A          147 QPLIIISENEDHTLHMTKLVYNW----STDLVIATNGN  180 (304)
T ss_dssp             SCEEEECCSHHHHHHHHHHHTTT----CSCEEEECSSC
T ss_pred             CceeeecCCCchhhhHHHHHHhC----CceEEEEeccc
Confidence            4678888775 567888888885    88999987765

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=93.34  E-value=0.077  Score=52.56  Aligned_cols=36  Identities=22%  Similarity=0.391  Sum_probs=32.4

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ...+|+|||+|++|+.+|..|...    |.+|+++|+.+.
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~l----Ga~V~v~D~~~~  224 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRL----GAVVSATDVRPA  224 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSTT
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHC----CCEEEEEcCCHH
Confidence            346899999999999999999997    899999999874

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=93.26  E-value=0.058  Score=44.80  Aligned_cols=33  Identities=30%  Similarity=0.349  Sum_probs=29.9

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ..|+|+|+|..|..+|..|.+.    |++|+++|+++
T Consensus         7 ~~v~I~G~G~iG~~~a~~l~~~----g~~v~~~d~~~   39 (144)
T 2hmt_A            7 KQFAVIGLGRFGGSIVKELHRM----GHEVLAVDINE   39 (144)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT----TCCCEEEESCH
T ss_pred             CcEEEECCCHHHHHHHHHHHHC----CCEEEEEeCCH
Confidence            3599999999999999999996    89999999865

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.23  E-value=0.07  Score=46.71  Aligned_cols=35  Identities=17%  Similarity=0.174  Sum_probs=31.0

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCC-CcEEEEEcCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTK-HLSVAIIDSNPA   93 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~-G~~V~v~E~~~~   93 (515)
                      ...|+|||+|..|..+|..|.+    . |++|+++|+++.
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~----~~g~~V~vid~~~~   74 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRA----RYGKISLGIEIREE   74 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHH----HHCSCEEEEESCHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHh----ccCCeEEEEECCHH
Confidence            4579999999999999999998    5 789999998763

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=92.93  E-value=0.083  Score=50.95  Aligned_cols=33  Identities=21%  Similarity=0.413  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ++|+|||+|-.|.+.|..|++.    |++|+++.|..
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~----g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKT----GHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHT----TCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhC----CCeEEEEeCCh
Confidence            5799999999999999999996    89999999864

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=92.85  E-value=0.1  Score=49.31  Aligned_cols=34  Identities=29%  Similarity=0.416  Sum_probs=31.1

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      .+|.|||+|.-|...|..|++.    |++|+++|+++.
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~----G~~V~l~d~~~~   38 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFH----GFAVTAYDINTD   38 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC----CCeEEEEeCCHH
Confidence            4799999999999999999996    999999998763

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=92.60  E-value=0.11  Score=47.07  Aligned_cols=35  Identities=17%  Similarity=0.283  Sum_probs=30.9

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ....|+|||||..|...|..|.+.    |.+|+|+++..
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~----GA~VtVvap~~   64 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQE----GAAITVVAPTV   64 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGG----CCCEEEECSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC----CCEEEEECCCC
Confidence            346899999999999999999996    89999998653

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=92.36  E-value=0.11  Score=49.98  Aligned_cols=35  Identities=26%  Similarity=0.464  Sum_probs=31.3

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~   93 (515)
                      ..+|+|||+|-.|.++|..|++.    |+ +|+++|+++.
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~----g~~~V~l~D~~~~   39 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKD----NLADVVLFDIAEG   39 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH----TCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC----CCceEEEEeCCch
Confidence            46899999999999999999996    77 9999998763

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=92.29  E-value=0.79  Score=46.88  Aligned_cols=34  Identities=9%  Similarity=0.206  Sum_probs=29.3

Q ss_pred             CcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHh
Q 010200          394 KRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIA  433 (515)
Q Consensus       394 ~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~  433 (515)
                      +++.++||+.+      |.|++-|+.++...|+.|.+.+.
T Consensus       461 ~~l~~aG~~~~------g~~v~gai~sG~~aA~~il~~l~  494 (504)
T 1sez_A          461 PGLFYAGNHRG------GLSVGKALSSGCNAADLVISYLE  494 (504)
T ss_dssp             TTEEECCSSSS------CSSHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeecCC------CCCHHHHHHHHHHHHHHHHHHHh
Confidence            78999999865      56899999999999999987664

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=92.29  E-value=0.084  Score=50.69  Aligned_cols=34  Identities=38%  Similarity=0.523  Sum_probs=31.1

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      -+|.|||+|.-|...|..++++    |++|+++|..+.
T Consensus         7 ~~VaViGaG~MG~giA~~~a~~----G~~V~l~D~~~~   40 (319)
T 3ado_A            7 GDVLIVGSGLVGRSWAMLFASG----GFRVKLYDIEPR   40 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCCEEEECSCHH
T ss_pred             CeEEEECCcHHHHHHHHHHHhC----CCeEEEEECCHH
Confidence            4799999999999999999996    999999998763

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=92.20  E-value=0.094  Score=51.48  Aligned_cols=36  Identities=17%  Similarity=0.266  Sum_probs=32.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ...+|+|||+|.+|+.+|..|...    |.+|+++|+.+.
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~l----Ga~V~v~D~~~~  218 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRL----GAKTTGYDVRPE  218 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHH----TCEEEEECSSGG
T ss_pred             CCCEEEEECchHHHHHHHHHHHHC----CCEEEEEeCCHH
Confidence            346899999999999999999997    899999998874

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=92.13  E-value=0.12  Score=52.86  Aligned_cols=35  Identities=23%  Similarity=0.486  Sum_probs=32.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      .+++|.|||+|-.|+.+|..|++.    |++|+++|+++
T Consensus         7 ~~~~I~VIG~G~vG~~lA~~la~~----G~~V~~~d~~~   41 (478)
T 2y0c_A            7 GSMNLTIIGSGSVGLVTGACLADI----GHDVFCLDVDQ   41 (478)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSCH
T ss_pred             CCceEEEECcCHHHHHHHHHHHhC----CCEEEEEECCH
Confidence            357899999999999999999996    99999999875

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=92.06  E-value=0.13  Score=50.38  Aligned_cols=34  Identities=35%  Similarity=0.254  Sum_probs=30.9

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      .++|.|||+|-.|...|..|++.    |++|+++++++
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~~----g~~V~~~~r~~   37 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLALK----GQSVLAWDIDA   37 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSCH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhC----CCEEEEEeCCH
Confidence            46899999999999999999996    89999999865

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=92.05  E-value=0.27  Score=49.65  Aligned_cols=34  Identities=26%  Similarity=0.477  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      .+|.|||+|.-|...|..|++.    |++|+++|+++.
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~a----G~~V~l~D~~~e   88 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLA----GIETFLVVRNEQ   88 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHC----CCeEEEEECcHH
Confidence            5799999999999999999996    999999998873

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=92.02  E-value=0.14  Score=48.34  Aligned_cols=33  Identities=21%  Similarity=0.236  Sum_probs=30.4

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      +|.|||+|..|.+.|..|++.    |++|+++++++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~----g~~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQ----GHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT----TCEEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhC----CCCEEEEEcCcc
Confidence            699999999999999999996    899999998764

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=92.01  E-value=0.093  Score=49.14  Aligned_cols=34  Identities=18%  Similarity=0.414  Sum_probs=30.7

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ...|+|||||-+|+..|..|.+.    |.+|+|++...
T Consensus        13 ~k~VLVVGgG~va~rka~~Ll~~----Ga~VtViap~~   46 (274)
T 1kyq_A           13 DKRILLIGGGEVGLTRLYKLMPT----GCKLTLVSPDL   46 (274)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGG----TCEEEEEEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHhC----CCEEEEEcCCC
Confidence            46799999999999999999996    99999998654

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=91.97  E-value=0.13  Score=49.08  Aligned_cols=36  Identities=19%  Similarity=0.277  Sum_probs=32.6

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ..+|.|||.|-.|...|..|++.    |++|+++++++..
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~----G~~V~~~dr~~~~   50 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEW----PGGVTVYDIRIEA   50 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTS----TTCEEEECSSTTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHC----CCeEEEEeCCHHH
Confidence            46899999999999999999996    9999999998753

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=91.94  E-value=0.11  Score=52.69  Aligned_cols=35  Identities=14%  Similarity=0.308  Sum_probs=31.5

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      .+|+|||.|++|+++|..|++.    |++|+++|.+...
T Consensus         6 ~~v~viG~G~~G~~~a~~l~~~----G~~v~~~D~~~~~   40 (439)
T 2x5o_A            6 KNVVIIGLGLTGLSCVDFFLAR----GVTPRVMDTRMTP   40 (439)
T ss_dssp             CCEEEECCHHHHHHHHHHHHTT----TCCCEEEESSSSC
T ss_pred             CEEEEEeecHHHHHHHHHHHhC----CCEEEEEECCCCc
Confidence            4699999999999999999985    9999999997754

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=91.86  E-value=0.16  Score=45.54  Aligned_cols=36  Identities=17%  Similarity=0.306  Sum_probs=31.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ...+|.|||+|-.|.++|..|++.    |++|+++++.+.
T Consensus        18 ~~~~I~iiG~G~mG~~la~~l~~~----g~~V~~~~~~~~   53 (209)
T 2raf_A           18 QGMEITIFGKGNMGQAIGHNFEIA----GHEVTYYGSKDQ   53 (209)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHT----TCEEEEECTTCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC----CCEEEEEcCCHH
Confidence            346799999999999999999996    899999998764

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=91.85  E-value=0.1  Score=50.07  Aligned_cols=33  Identities=21%  Similarity=0.334  Sum_probs=29.7

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ++|+|||+|-.|.+.|..|++.    |++|++++|..
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~----g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRS----GEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHT----SCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHC----CCeEEEEEcCc
Confidence            5799999999999999999996    89999999864

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=91.84  E-value=0.16  Score=48.78  Aligned_cols=36  Identities=31%  Similarity=0.454  Sum_probs=31.6

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~   92 (515)
                      +...+|.|||+|..|.++|+.|++.    |+ +|+++|..+
T Consensus         6 ~~~~kv~ViGaG~vG~~ia~~l~~~----g~~~v~l~D~~~   42 (315)
T 3tl2_A            6 IKRKKVSVIGAGFTGATTAFLLAQK----ELADVVLVDIPQ   42 (315)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHT----TCCEEEEECCGG
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhC----CCCeEEEEeccc
Confidence            3456899999999999999999996    78 999999873

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=91.84  E-value=0.14  Score=49.25  Aligned_cols=34  Identities=29%  Similarity=0.438  Sum_probs=30.6

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCc--EEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~--~V~v~E~~~   92 (515)
                      .++|+|||+|-.|.++|..|++.    |+  +|+++|++.
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~----g~~~~V~l~d~~~   42 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQR----GIAREIVLEDIAK   42 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT----TCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC----CCCCEEEEEeCCh
Confidence            36899999999999999999996    78  999999875

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=91.76  E-value=0.14  Score=52.01  Aligned_cols=34  Identities=32%  Similarity=0.326  Sum_probs=31.1

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ..+|.|||.|.+|+++|..|++.    |++|+++|++.
T Consensus         9 ~k~v~viG~G~sG~s~A~~l~~~----G~~V~~~D~~~   42 (451)
T 3lk7_A            9 NKKVLVLGLARSGEAAARLLAKL----GAIVTVNDGKP   42 (451)
T ss_dssp             TCEEEEECCTTTHHHHHHHHHHT----TCEEEEEESSC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhC----CCEEEEEeCCc
Confidence            35799999999999999999996    99999999876

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=91.72  E-value=0.17  Score=48.96  Aligned_cols=34  Identities=24%  Similarity=0.442  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~   93 (515)
                      .+|+|||+|-.|.++|..|++.    |+ +|.++|.+..
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~----g~~~V~L~Di~~~   49 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQK----DLGDVYMFDIIEG   49 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCCEEEEECSSTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhC----CCCeEEEEECCHH
Confidence            5899999999999999999996    77 9999999864

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=91.64  E-value=0.18  Score=48.56  Aligned_cols=35  Identities=26%  Similarity=0.472  Sum_probs=30.8

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~   93 (515)
                      ..+|+|||+|-.|..+|..|+..    |+ +|.++|.+..
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~----g~~~v~L~Di~~~   39 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQK----NLGDVVLFDIVKN   39 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT----TCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC----CCCeEEEEeCCHH
Confidence            35899999999999999999996    77 8999998763

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=91.49  E-value=0.16  Score=51.54  Aligned_cols=34  Identities=38%  Similarity=0.558  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ++|.|||+|-.|+.+|..|++.    |++|+++|+++.
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~----G~~V~~~D~~~~   36 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAEL----GANVRCIDTDRN   36 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCEEEEECSCHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhc----CCEEEEEECCHH
Confidence            5799999999999999999996    999999998763

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=91.49  E-value=0.14  Score=49.65  Aligned_cols=32  Identities=25%  Similarity=0.408  Sum_probs=29.6

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN   91 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~   91 (515)
                      ++|+|||+|-.|.++|..|++.    |++|++++|.
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~----g~~V~~~~r~   35 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALA----GEAINVLARG   35 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHT----TCCEEEECCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHC----CCEEEEEECh
Confidence            5799999999999999999996    8999999874

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=91.42  E-value=0.12  Score=43.31  Aligned_cols=34  Identities=21%  Similarity=0.312  Sum_probs=30.3

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ...|+|||+|..|..+|..|++.    |++|+++++..
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~----g~~v~v~~r~~   54 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYP----QYKVTVAGRNI   54 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTT----TCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC----CCEEEEEcCCH
Confidence            45799999999999999999985    88899999875

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=91.27  E-value=0.19  Score=50.50  Aligned_cols=36  Identities=31%  Similarity=0.400  Sum_probs=31.8

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      +..+|.|||.|-.||.+|..|++.    |++|+.+|-++.
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~----G~~V~g~Did~~   55 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALL----GHRVVGYDVNPS   55 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHH----TCEEEEECSCHH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhC----CCcEEEEECCHH
Confidence            346899999999999999999985    999999998763

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=91.26  E-value=0.17  Score=48.31  Aligned_cols=33  Identities=30%  Similarity=0.465  Sum_probs=30.2

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ++|.|||+|..|.++|..|++.    |++|+++++++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~----g~~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQG----GNDVTLIDQWP   36 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCEEEEECSCH
T ss_pred             CeEEEECcCHHHHHHHHHHHhC----CCcEEEEECCH
Confidence            4799999999999999999996    89999999865

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=91.23  E-value=0.29  Score=47.25  Aligned_cols=34  Identities=21%  Similarity=0.162  Sum_probs=29.9

Q ss_pred             ccEEEECCCHHHHH-HHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMA-LACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~-~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      .+|.|||.|.+|++ +|..|++.    |++|.++|+...
T Consensus         5 ~~i~~iGiGg~Gms~~A~~L~~~----G~~V~~~D~~~~   39 (326)
T 3eag_A            5 KHIHIIGIGGTFMGGLAAIAKEA----GFEVSGCDAKMY   39 (326)
T ss_dssp             CEEEEESCCSHHHHHHHHHHHHT----TCEEEEEESSCC
T ss_pred             cEEEEEEECHHHHHHHHHHHHhC----CCEEEEEcCCCC
Confidence            46999999999996 88888885    999999998764

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=91.23  E-value=0.19  Score=48.11  Aligned_cols=35  Identities=20%  Similarity=0.379  Sum_probs=31.8

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ..+|.|||.|..|..+|..|++.    |++|+++++++.
T Consensus        21 m~~I~iIG~G~mG~~~A~~l~~~----G~~V~~~dr~~~   55 (310)
T 3doj_A           21 MMEVGFLGLGIMGKAMSMNLLKN----GFKVTVWNRTLS   55 (310)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSGG
T ss_pred             CCEEEEECccHHHHHHHHHHHHC----CCeEEEEeCCHH
Confidence            36899999999999999999996    999999998864

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=91.14  E-value=0.19  Score=50.71  Aligned_cols=37  Identities=19%  Similarity=0.407  Sum_probs=33.4

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      .+.+|.|||.|-.|+.+|..|++.    |++|+++++++..
T Consensus         7 ~~~~~~vIGlG~vG~~~A~~La~~----G~~V~~~D~~~~k   43 (446)
T 4a7p_A            7 GSVRIAMIGTGYVGLVSGACFSDF----GHEVVCVDKDARK   43 (446)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSCSTT
T ss_pred             CceEEEEEcCCHHHHHHHHHHHHC----CCEEEEEeCCHHH
Confidence            357899999999999999999996    9999999998753

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=91.13  E-value=0.21  Score=50.10  Aligned_cols=35  Identities=23%  Similarity=0.389  Sum_probs=31.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ..++|.|||.|-.|+.+|..|++     |++|+++|+++.
T Consensus        35 ~~mkIaVIGlG~mG~~lA~~La~-----G~~V~~~D~~~~   69 (432)
T 3pid_A           35 EFMKITISGTGYVGLSNGVLIAQ-----NHEVVALDIVQA   69 (432)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHT-----TSEEEEECSCHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHc-----CCeEEEEecCHH
Confidence            34689999999999999999998     799999998764

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=91.02  E-value=0.19  Score=50.12  Aligned_cols=35  Identities=29%  Similarity=0.456  Sum_probs=31.4

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ...|+|||+|.+|+.+|..|+..    |.+|+++|+.+.
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~----Ga~V~v~D~~~~  206 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSL----GAIVRAFDTRPE  206 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC----CCEEEEEcCCHH
Confidence            46799999999999999999987    899999998764

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=90.80  E-value=0.23  Score=49.21  Aligned_cols=36  Identities=22%  Similarity=0.266  Sum_probs=31.8

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ....|+|+|+|.+|+.+|..|+..    |.+|+++|+.+.
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~----Ga~V~~~d~~~~  206 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRL----GAVVMATDVRAA  206 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSCST
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC----CCEEEEEeCCHH
Confidence            346899999999999999999987    889999998764

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=90.79  E-value=0.21  Score=47.61  Aligned_cols=34  Identities=38%  Similarity=0.439  Sum_probs=31.2

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ..+|.|||.|-.|..+|..|++.    |++|+++++++
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~----G~~V~~~dr~~   40 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRA----GLSTWGADLNP   40 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC----CCeEEEEECCH
Confidence            46899999999999999999996    99999999876

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=90.71  E-value=0.25  Score=47.61  Aligned_cols=36  Identities=28%  Similarity=0.455  Sum_probs=31.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~   93 (515)
                      +..+|+|||+|-.|.++|..|+..    |+ +|.++|....
T Consensus         6 ~~~kI~viGaG~vG~~~a~~l~~~----~~~~v~L~Di~~~   42 (324)
T 3gvi_A            6 ARNKIALIGSGMIGGTLAHLAGLK----ELGDVVLFDIAEG   42 (324)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT----TCCEEEEECSSSS
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhC----CCCeEEEEeCCch
Confidence            346899999999999999999996    66 9999998764

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=90.70  E-value=0.21  Score=47.74  Aligned_cols=32  Identities=31%  Similarity=0.486  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCc--EEEEEcCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNP   92 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~--~V~v~E~~~   92 (515)
                      +|+|||+|-.|.++|..|+..    |+  +|.++|.+.
T Consensus         2 kI~VIGaG~vG~~la~~la~~----g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLR----GSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT----TCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhC----CCCCEEEEEeCCH
Confidence            699999999999999999996    77  999999875

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=90.67  E-value=0.22  Score=48.79  Aligned_cols=38  Identities=16%  Similarity=0.201  Sum_probs=32.1

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ++..++|.|||.|.-|..+|..|++.    |++|+++++.+.
T Consensus        19 Mm~~mkIgiIGlG~mG~~~A~~L~~~----G~~V~v~dr~~~   56 (358)
T 4e21_A           19 YFQSMQIGMIGLGRMGADMVRRLRKG----GHECVVYDLNVN   56 (358)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSCHH
T ss_pred             hhcCCEEEEECchHHHHHHHHHHHhC----CCEEEEEeCCHH
Confidence            44567899999999999999999996    999999998763

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=90.52  E-value=0.17  Score=48.51  Aligned_cols=32  Identities=34%  Similarity=0.353  Sum_probs=29.0

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCC-----C-cEEEEEcC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTK-----H-LSVAIIDS   90 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~-----G-~~V~v~E~   90 (515)
                      +++|.|||+|..|.++|..|++    .     | ++|++++|
T Consensus         8 ~m~I~iiG~G~mG~~~a~~L~~----~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            8 PIKIAVFGLGGVGGYYGAMLAL----RAAATDGLLEVSWIAR   45 (317)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH----HHHHTTSSEEEEEECC
T ss_pred             CCEEEEECcCHHHHHHHHHHHh----CccccCCCCCEEEEEc
Confidence            3689999999999999999998    4     7 89999987

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=90.49  E-value=0.24  Score=47.40  Aligned_cols=35  Identities=26%  Similarity=0.395  Sum_probs=30.4

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      +|+|||+|-.|.++|..|++.+  .|.+|+++|+++.
T Consensus         2 kI~VIGaG~vG~~la~~la~~~--~g~~V~l~D~~~~   36 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQ--LARELVLLDVVEG   36 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT--CCSEEEEECSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCC--CCCEEEEEeCChh
Confidence            6999999999999999999842  2789999999763

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=90.49  E-value=0.26  Score=47.16  Aligned_cols=32  Identities=25%  Similarity=0.555  Sum_probs=29.6

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ++|+|||+|-.|.+.|..|+ .    |.+|+++.|.+
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~----g~~V~~~~r~~   34 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-L----YHDVTVVTRRQ   34 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-T----TSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHh-c----CCceEEEECCH
Confidence            68999999999999999999 6    89999999875

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=90.35  E-value=0.2  Score=52.05  Aligned_cols=36  Identities=22%  Similarity=0.225  Sum_probs=32.0

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      +-+++|||||+.|+=+|..+++.    |.+|+|+++...+
T Consensus       223 P~~lvIIGgG~IGlE~A~~~~~l----G~~VTii~~~~~L  258 (542)
T 4b1b_A          223 PGKTLVVGASYVALECSGFLNSL----GYDVTVAVRSIVL  258 (542)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHH----TCCEEEEESSCSS
T ss_pred             CceEEEECCCHHHHHHHHHHHhc----CCeEEEecccccc
Confidence            45799999999999999999997    9999999986544

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=90.24  E-value=0.24  Score=46.98  Aligned_cols=35  Identities=26%  Similarity=0.468  Sum_probs=31.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      .+..|.|||+|.-|...|..|+ +    |++|+++|+.+.
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-a----G~~V~v~d~~~~   45 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-S----KHEVVLQDVSEK   45 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-T----TSEEEEECSCHH
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-c----CCEEEEEECCHH
Confidence            4578999999999999999999 8    999999998763

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=90.17  E-value=0.28  Score=48.10  Aligned_cols=32  Identities=31%  Similarity=0.398  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      +|.|||+|-.|.+.|..|++.    |++|+++++.+
T Consensus        17 kI~iIG~G~mG~~la~~L~~~----G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKK----CREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTT----EEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhC----CCEEEEEECCH
Confidence            799999999999999999996    89999999875

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=90.15  E-value=0.23  Score=48.68  Aligned_cols=33  Identities=33%  Similarity=0.461  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ..|+|+|+|.+|++++..|+..    |.+|+++++.+
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~----Ga~V~v~dr~~  200 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGL----GAQVQIFDINV  200 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC----CCEEEEEeCCH
Confidence            6799999999999999999996    88999999875

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=90.15  E-value=0.18  Score=50.38  Aligned_cols=35  Identities=23%  Similarity=0.345  Sum_probs=31.8

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      +..|+|||.|..|..+|..|.+.    |++|+|+|+++.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~----g~~vvvId~d~~   38 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSS----GVKMVVLDHDPD   38 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT----TCCEEEEECCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC----CCCEEEEECCHH
Confidence            35799999999999999999996    999999999865

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=90.14  E-value=0.27  Score=47.14  Aligned_cols=35  Identities=17%  Similarity=0.393  Sum_probs=31.4

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ..+|.|||+|..|...|..|++.    |++|.++++++.
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~----g~~V~~~~~~~~   64 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKM----GHTVTVWNRTAE   64 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHT----TCCEEEECSSGG
T ss_pred             CCeEEEEcccHHHHHHHHHHHhC----CCEEEEEeCCHH
Confidence            46899999999999999999986    899999998764

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=90.14  E-value=0.14  Score=48.67  Aligned_cols=33  Identities=27%  Similarity=0.459  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ++|+|||+|--|.+.|..|++.    |++|++++|..
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~----g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQS----LPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHH----CTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHC----CCeEEEEEecc
Confidence            5799999999999999999996    89999999875

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=90.11  E-value=0.24  Score=46.76  Aligned_cols=34  Identities=29%  Similarity=0.451  Sum_probs=31.1

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ++|.|||.|-.|..+|..|++.    |++|+++++++.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~----G~~V~~~dr~~~   35 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKA----GCSVTIWNRSPE   35 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSGG
T ss_pred             CEEEEEeecHHHHHHHHHHHHC----CCeEEEEcCCHH
Confidence            4799999999999999999996    999999998864

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=90.06  E-value=0.32  Score=49.31  Aligned_cols=57  Identities=9%  Similarity=-0.029  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccc--CCe-eEEEcCCCcEEEeeEEEEecCCC
Q 010200          171 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTK--GHL-AKLDLSDGTSLYAKLVVGADGGK  247 (515)
Q Consensus       171 ~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~v~~~~g~~~~ad~vV~AdG~~  247 (515)
                      ..+.+.|.+.+++.| ++|+++++|++|..                    .  ++. +.|.. +|+++.||.||.|.|.+
T Consensus       242 ~~l~~al~~~~~~~G-~~i~~~~~V~~i~~--------------------~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~  299 (453)
T 2bcg_G          242 GELPQGFARLSAIYG-GTYMLDTPIDEVLY--------------------KKDTGKFEGVKT-KLGTFKAPLVIADPTYF  299 (453)
T ss_dssp             THHHHHHHHHHHHTT-CEEECSCCCCEEEE--------------------ETTTTEEEEEEE-TTEEEECSCEEECGGGC
T ss_pred             HHHHHHHHHHHHHcC-CEEECCCEEEEEEE--------------------ECCCCeEEEEEE-CCeEEECCEEEECCCcc
Confidence            478899999999888 89999999999976                    2  233 34554 57789999999999998


Q ss_pred             ch
Q 010200          248 SR  249 (515)
Q Consensus       248 S~  249 (515)
                      +.
T Consensus       300 ~~  301 (453)
T 2bcg_G          300 PE  301 (453)
T ss_dssp             GG
T ss_pred             ch
Confidence            64

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=90.01  E-value=0.27  Score=47.24  Aligned_cols=36  Identities=28%  Similarity=0.468  Sum_probs=30.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCc--EEEEEcCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNPA   93 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~--~V~v~E~~~~   93 (515)
                      ++.+|+|||+|-.|.++|+.|+..    |+  ++.++|.+..
T Consensus         6 ~~~KI~IiGaG~vG~~~a~~l~~~----~~~~ev~L~Di~~~   43 (318)
T 1y6j_A            6 SRSKVAIIGAGFVGASAAFTMALR----QTANELVLIDVFKE   43 (318)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHT----TCSSEEEEECCC--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC----CCCCEEEEEeCChH
Confidence            347899999999999999999996    66  8999998753

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=89.98  E-value=0.21  Score=46.15  Aligned_cols=33  Identities=30%  Similarity=0.392  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~   92 (515)
                      .+|+|||+|-.|..+|..|++.    |. +++|+|++.
T Consensus        32 ~~VlVvG~Gg~G~~va~~La~~----Gv~~i~lvD~d~   65 (249)
T 1jw9_B           32 SRVLIVGLGGLGCAASQYLASA----GVGNLTLLDFDT   65 (249)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH----TCSEEEEECCCB
T ss_pred             CeEEEEeeCHHHHHHHHHHHHc----CCCeEEEEcCCC
Confidence            5799999999999999999997    76 899999886

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=89.88  E-value=0.26  Score=50.12  Aligned_cols=36  Identities=25%  Similarity=0.319  Sum_probs=32.2

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~   93 (515)
                      .++|.|||+|-.|+.+|..|++.   +|+ +|+++|+++.
T Consensus        18 ~mkIaVIGlG~mG~~lA~~la~~---~G~~~V~~~D~~~~   54 (478)
T 3g79_A           18 IKKIGVLGMGYVGIPAAVLFADA---PCFEKVLGFQRNSK   54 (478)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHS---TTCCEEEEECCCCT
T ss_pred             CCEEEEECcCHHHHHHHHHHHHh---CCCCeEEEEECChh
Confidence            35799999999999999999994   289 9999999876

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=89.74  E-value=0.38  Score=48.92  Aligned_cols=33  Identities=36%  Similarity=0.597  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      .+|.|||+|.-|...|..|++.    |++|+++|+++
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~----G~~V~l~D~~~   70 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARV----GISVVAVESDP   70 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT----TCEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhC----CCeEEEEECCH
Confidence            4799999999999999999996    99999999876

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=89.70  E-value=0.35  Score=46.47  Aligned_cols=35  Identities=26%  Similarity=0.386  Sum_probs=30.8

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~   93 (515)
                      ..+|.|||+|..|.++|..|+..    |+ ++.++|..+.
T Consensus         5 ~~kI~iiGaG~vG~~~a~~l~~~----~~~~v~l~Di~~~   40 (321)
T 3p7m_A            5 RKKITLVGAGNIGGTLAHLALIK----QLGDVVLFDIAQG   40 (321)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT----TCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC----CCceEEEEeCChH
Confidence            46899999999999999999986    55 9999998763

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=89.65  E-value=0.36  Score=46.05  Aligned_cols=35  Identities=34%  Similarity=0.490  Sum_probs=31.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ...+|.|||.|.-|...|..|++.    |++|+++++++
T Consensus         8 ~~~~IgiIG~G~mG~~~A~~l~~~----G~~V~~~dr~~   42 (306)
T 3l6d_A            8 FEFDVSVIGLGAMGTIMAQVLLKQ----GKRVAIWNRSP   42 (306)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHT----TCCEEEECSSH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC----CCEEEEEeCCH
Confidence            346899999999999999999996    89999999876

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=89.61  E-value=0.25  Score=48.41  Aligned_cols=37  Identities=24%  Similarity=0.422  Sum_probs=32.7

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~   93 (515)
                      ..+.+|+|+|||-||..+|..|...    |. +|+++|+...
T Consensus       186 l~d~kVVi~GAGaAG~~iA~ll~~~----Ga~~I~v~D~~Gl  223 (398)
T 2a9f_A          186 LDEVSIVVNGGGSAGLSITRKLLAA----GATKVTVVDKFGI  223 (398)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHH----TCCEEEEEETTEE
T ss_pred             CCccEEEEECCCHHHHHHHHHHHHc----CCCeEEEEECCCc
Confidence            3467899999999999999999997    77 9999999853

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=89.55  E-value=0.3  Score=47.29  Aligned_cols=35  Identities=20%  Similarity=0.170  Sum_probs=31.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      .+++|.|||+|--|.+.|..|++.    |++|++++|.+
T Consensus        13 ~~~kI~iIG~G~mG~ala~~L~~~----G~~V~~~~r~~   47 (335)
T 1z82_A           13 MEMRFFVLGAGSWGTVFAQMLHEN----GEEVILWARRK   47 (335)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSH
T ss_pred             cCCcEEEECcCHHHHHHHHHHHhC----CCeEEEEeCCH
Confidence            457899999999999999999996    89999999865

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=89.53  E-value=0.28  Score=47.16  Aligned_cols=36  Identities=19%  Similarity=0.420  Sum_probs=32.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ...+|.|||.|..|..+|..|++.    |++|+++++.+.
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~----G~~V~~~dr~~~   65 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEA----GYALQVWNRTPA   65 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHT----TCEEEEECSCHH
T ss_pred             CCCEEEEECccHHHHHHHHHHHhC----CCeEEEEcCCHH
Confidence            346899999999999999999996    999999998763

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=89.47  E-value=0.29  Score=47.15  Aligned_cols=35  Identities=31%  Similarity=0.544  Sum_probs=30.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCc--EEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~--~V~v~E~~~   92 (515)
                      ...+|+|||+|..|.++|..|+..    |+  ++.++|...
T Consensus         4 ~~~kI~ViGaG~vG~~~a~~l~~~----~~~~~l~l~D~~~   40 (326)
T 3pqe_A            4 HVNKVALIGAGFVGSSYAFALINQ----GITDELVVIDVNK   40 (326)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHH----TCCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC----CCCceEEEEecch
Confidence            346899999999999999999985    65  899999864

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=89.46  E-value=0.24  Score=49.94  Aligned_cols=32  Identities=25%  Similarity=0.332  Sum_probs=29.8

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      +|.|||+|-.|+.+|..|++.    |++|+++++++
T Consensus         2 kI~VIG~G~vG~~~A~~la~~----G~~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSAR----GHEVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT----TCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHC----CCEEEEEECCH
Confidence            699999999999999999996    89999999875

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=89.42  E-value=0.33  Score=44.64  Aligned_cols=36  Identities=33%  Similarity=0.509  Sum_probs=31.8

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ...+|.|||+|--|.++|..|++.    |++|++++|++.
T Consensus        18 ~~~kIgiIG~G~mG~alA~~L~~~----G~~V~~~~r~~~   53 (245)
T 3dtt_A           18 QGMKIAVLGTGTVGRTMAGALADL----GHEVTIGTRDPK   53 (245)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHT----TCEEEEEESCHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC----CCEEEEEeCChh
Confidence            457899999999999999999996    899999998763

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=89.14  E-value=0.32  Score=46.76  Aligned_cols=33  Identities=33%  Similarity=0.482  Sum_probs=29.3

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ..+|+|||+|--|.++|..|++.    |++|+++ +++
T Consensus        19 ~~kI~IiGaGa~G~~~a~~L~~~----G~~V~l~-~~~   51 (318)
T 3hwr_A           19 GMKVAIMGAGAVGCYYGGMLARA----GHEVILI-ARP   51 (318)
T ss_dssp             -CEEEEESCSHHHHHHHHHHHHT----TCEEEEE-CCH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHC----CCeEEEE-EcH
Confidence            46899999999999999999996    8999999 654

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=89.13  E-value=0.37  Score=46.08  Aligned_cols=33  Identities=27%  Similarity=0.504  Sum_probs=29.6

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~   92 (515)
                      .+|+|||+|-.|..+|..|+..    |+ +|.++|.+.
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~----g~~~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAK----ELGDIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHC----CCCeEEEEeCCc
Confidence            5799999999999999999986    65 899999875

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=88.95  E-value=0.32  Score=46.88  Aligned_cols=37  Identities=16%  Similarity=0.245  Sum_probs=31.2

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCC----cEEEEEcCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKH----LSVAIIDSNPA   93 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G----~~V~v~E~~~~   93 (515)
                      +..++|.|||+|--|.++|..|++.    |    ++|++++|.+.
T Consensus        20 ~~~mkI~iIG~G~mG~ala~~L~~~----G~~~~~~V~v~~r~~~   60 (322)
T 2izz_A           20 FQSMSVGFIGAGQLAFALAKGFTAA----GVLAAHKIMASSPDMD   60 (322)
T ss_dssp             --CCCEEEESCSHHHHHHHHHHHHT----TSSCGGGEEEECSCTT
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHC----CCCCcceEEEECCCcc
Confidence            3446899999999999999999996    7    89999998763

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=88.83  E-value=0.24  Score=45.18  Aligned_cols=34  Identities=9%  Similarity=0.125  Sum_probs=30.0

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ...|+|+|+|..|..+|..|.+.    |+ |+++|+++.
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~----g~-v~vid~~~~   42 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGS----EV-FVLAEDENV   42 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTS----EE-EEEESCGGG
T ss_pred             CCEEEEECCChHHHHHHHHHHhC----Ce-EEEEECCHH
Confidence            45799999999999999999986    89 999998864

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=88.82  E-value=0.34  Score=43.58  Aligned_cols=33  Identities=27%  Similarity=0.406  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      .+|.|||+|-.|...|..|++.    |++|.+++|+.
T Consensus        29 ~~I~iiG~G~~G~~la~~l~~~----g~~V~~~~r~~   61 (215)
T 2vns_A           29 PKVGILGSGDFARSLATRLVGS----GFKVVVGSRNP   61 (215)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT----TCCEEEEESSH
T ss_pred             CEEEEEccCHHHHHHHHHHHHC----CCEEEEEeCCH
Confidence            5799999999999999999986    89999999875

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=88.78  E-value=0.38  Score=47.31  Aligned_cols=34  Identities=35%  Similarity=0.476  Sum_probs=30.7

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ...|+|+|+|..|+.+|..|+..    |.+|+++++.+
T Consensus       166 ~~~V~ViGaG~iG~~~a~~l~~~----Ga~V~~~d~~~  199 (369)
T 2eez_A          166 PASVVILGGGTVGTNAAKIALGM----GAQVTILDVNH  199 (369)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT----TCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC----CCEEEEEECCH
Confidence            46799999999999999999986    89999999875

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=88.74  E-value=0.37  Score=46.30  Aligned_cols=34  Identities=21%  Similarity=0.214  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCC-cEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G-~~V~v~E~~~~   93 (515)
                      .+|.|||.|-.|..+|..|++.    | ++|+++++.+.
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~----G~~~V~~~dr~~~   59 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGR----NAARLAAYDLRFN   59 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT----TCSEEEEECGGGG
T ss_pred             CeEEEECccHHHHHHHHHHHHc----CCCeEEEEeCCCc
Confidence            5799999999999999999996    9 99999999863

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=88.61  E-value=0.13  Score=46.77  Aligned_cols=32  Identities=19%  Similarity=0.303  Sum_probs=29.2

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDS   90 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~   90 (515)
                      .++|.|||.|..|.++|..|++.    |++|+++++
T Consensus         6 ~mkI~IIG~G~~G~sLA~~L~~~----G~~V~~~~~   37 (232)
T 3dfu_A            6 RLRVGIFDDGSSTVNMAEKLDSV----GHYVTVLHA   37 (232)
T ss_dssp             CCEEEEECCSCCCSCHHHHHHHT----TCEEEECSS
T ss_pred             CcEEEEEeeCHHHHHHHHHHHHC----CCEEEEecC
Confidence            46899999999999999999996    899999876

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=88.25  E-value=0.41  Score=48.94  Aligned_cols=36  Identities=17%  Similarity=0.484  Sum_probs=32.6

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ..+|+|||||+.|+-+|..|++.    |.+|+++|+.+.+
T Consensus       191 ~~~v~ViGgG~~g~e~A~~l~~~----g~~Vtli~~~~~~  226 (484)
T 3o0h_A          191 PKSIVIVGGGYIGVEFANIFHGL----GVKTTLLHRGDLI  226 (484)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHc----CCeEEEEECCCcc
Confidence            45899999999999999999996    8999999998765

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=88.19  E-value=0.52  Score=45.19  Aligned_cols=34  Identities=32%  Similarity=0.411  Sum_probs=30.7

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCc--EEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~--~V~v~E~~~   92 (515)
                      ..+|.|||.|..|.++|..|++.    |+  +|.++++++
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~----G~~~~V~~~dr~~   68 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRS----GFKGKIYGYDINP   68 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHT----TCCSEEEEECSCH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhC----CCCCEEEEEECCH
Confidence            36899999999999999999996    88  999999876

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=88.14  E-value=0.44  Score=46.97  Aligned_cols=34  Identities=32%  Similarity=0.441  Sum_probs=30.7

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ...|+|||+|..|+.+|..|+..    |.+|+++++.+
T Consensus       168 g~~V~ViG~G~iG~~~a~~a~~~----Ga~V~~~d~~~  201 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIANGM----GATVTVLDINI  201 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT----TCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC----CCEEEEEeCCH
Confidence            46799999999999999999986    89999999875

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=88.03  E-value=0.37  Score=45.68  Aligned_cols=33  Identities=27%  Similarity=0.505  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ++|.|||+|..|...|..|++.    |++|.++++.+
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~----g~~V~~~~~~~   38 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKA----GYSLVVSDRNP   38 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT----TCEEEEECSCH
T ss_pred             ceEEEECchHHHHHHHHHHHhC----CCEEEEEeCCH
Confidence            5799999999999999999996    89999999875

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=87.97  E-value=0.44  Score=48.37  Aligned_cols=36  Identities=14%  Similarity=0.373  Sum_probs=32.8

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ..+|+|||||+.|+-+|..|++.    |.+|+++|+.+.+
T Consensus       170 ~~~v~ViGgG~~g~e~A~~l~~~----g~~Vt~v~~~~~~  205 (463)
T 4dna_A          170 PESILIAGGGYIAVEFANIFHGL----GVKTTLIYRGKEI  205 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHc----CCeEEEEEcCCcc
Confidence            45899999999999999999996    8999999998865

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=87.97  E-value=0.35  Score=45.82  Aligned_cols=33  Identities=24%  Similarity=0.296  Sum_probs=29.4

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCc--EEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~--~V~v~E~~~   92 (515)
                      ++|+|||+|..|.++|+.|++.    |+  +|.++|+.+
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~----~~~~~v~L~D~~~   35 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLN----LDVDEIALVDIAE   35 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH----SCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC----CCCCeEEEEECCh
Confidence            3699999999999999999986    66  899999876

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=87.97  E-value=0.38  Score=45.65  Aligned_cols=34  Identities=21%  Similarity=0.306  Sum_probs=30.8

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ..+|.|||+|-.|...|..|++.    |++|+++++.+
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~----g~~V~~~~~~~   37 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKE----GVTVYAFDLME   37 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHT----TCEEEEECSSH
T ss_pred             CCEEEEECccHHHHHHHHHHHHC----CCeEEEEeCCH
Confidence            46899999999999999999986    89999999875

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=87.96  E-value=0.52  Score=42.00  Aligned_cols=32  Identities=28%  Similarity=0.425  Sum_probs=29.3

Q ss_pred             cEEEEC-CCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           57 DVAVVG-GGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        57 dVvIVG-gG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      +|+||| +|-.|..+|..|++.    |++|.+++|++
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~----g~~V~~~~r~~   34 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATL----GHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTT----TCEEEEEESSH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHC----CCEEEEEeCCH
Confidence            699999 999999999999996    89999999865

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=87.85  E-value=0.33  Score=46.81  Aligned_cols=30  Identities=30%  Similarity=0.425  Sum_probs=28.3

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDS   90 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~   90 (515)
                      +|.|||+|-.|.++|..|++.    |++|+++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~----g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDN----GNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHH----CCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhC----CCeEEEEEc
Confidence            699999999999999999996    899999998

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=87.65  E-value=0.4  Score=46.88  Aligned_cols=36  Identities=22%  Similarity=0.308  Sum_probs=31.9

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~   92 (515)
                      ..+.+|+|+|||-+|..+|..|...    |. +|+++|+..
T Consensus       190 l~~~kVVv~GAGaAG~~iAkll~~~----G~~~I~v~Dr~G  226 (388)
T 1vl6_A          190 IEEVKVVVNGIGAAGYNIVKFLLDL----GVKNVVAVDRKG  226 (388)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHH----TCCEEEEEETTE
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHhC----CCCeEEEEECCC
Confidence            3567899999999999999999987    77 899999984

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=87.57  E-value=0.46  Score=47.29  Aligned_cols=32  Identities=28%  Similarity=0.326  Sum_probs=28.3

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDS   90 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~   90 (515)
                      ++|.|||+|-.|.++|..|++.   .|++|+++++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~---~G~~V~~~~~   34 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASR---DGVEVRVLTL   34 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTS---TTEEEEEECC
T ss_pred             ceEEEECCCHHHHHHHHHHHhC---CCCEEEEEeC
Confidence            5799999999999999999873   2899999983

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=87.50  E-value=0.55  Score=43.79  Aligned_cols=35  Identities=26%  Similarity=0.477  Sum_probs=31.5

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ...|+|+|+|-+|-++|..|++.    |.+|+|+.|...
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~----G~~v~V~nRt~~  152 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQ----GLQVSVLNRSSR  152 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC----CCEEEEEeCCHH
Confidence            46899999999999999999997    889999998864

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=87.39  E-value=0.43  Score=44.22  Aligned_cols=35  Identities=20%  Similarity=0.289  Sum_probs=30.7

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCC----cEEEEEcCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKH----LSVAIIDSNPA   93 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G----~~V~v~E~~~~   93 (515)
                      .++|.|||+|--|.+.|..|++.    |    ++|.++++.+.
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~----g~~~~~~v~~~~~~~~   42 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANA----NIIKKENLFYYGPSKK   42 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHH----TSSCGGGEEEECSSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHC----CCCCCCeEEEEeCCcc
Confidence            35799999999999999999986    7    79999998763

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=87.38  E-value=0.39  Score=46.13  Aligned_cols=32  Identities=28%  Similarity=0.453  Sum_probs=29.2

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCc--EEEEEcCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNP   92 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~--~V~v~E~~~   92 (515)
                      +|+|||+|-.|.++|..|++.    |+  +|+++|+++
T Consensus         2 kI~VIGaG~~G~~la~~l~~~----g~~~~V~l~D~~~   35 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMK----GFAREMVLIDVDK   35 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH----TCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhC----CCCCeEEEEeCCh
Confidence            699999999999999999986    78  999999875

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=87.36  E-value=0.47  Score=45.55  Aligned_cols=35  Identities=31%  Similarity=0.460  Sum_probs=29.9

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCC--cEEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKH--LSVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G--~~V~v~E~~~   92 (515)
                      .+.+|+|||+|-.|.++|+.|+..    |  ..+.++|.+.
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~----~~~~ei~L~Di~~   41 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQ----SIVDELVIIDLDT   41 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHH----CSCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC----CCCCEEEEEeCCh
Confidence            457899999999999999999985    5  4899998764

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=87.35  E-value=0.26  Score=44.58  Aligned_cols=34  Identities=29%  Similarity=0.502  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEE-EcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAI-IDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v-~E~~~~   93 (515)
                      ++|.|||+|-.|.++|..|++.    |++|++ ++|++.
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~----g~~V~~v~~r~~~   58 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAA----QIPAIIANSRGPA   58 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHT----TCCEEEECTTCGG
T ss_pred             CEEEEECCCHHHHHHHHHHHhC----CCEEEEEECCCHH
Confidence            5799999999999999999996    899998 888763

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=87.26  E-value=0.54  Score=46.78  Aligned_cols=31  Identities=39%  Similarity=0.637  Sum_probs=28.8

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      +|.|||+|-.|+.+|..|++     |++|+++++++
T Consensus         2 kI~VIG~G~vG~~~A~~La~-----G~~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-----QNEVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-----TSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhC-----CCEEEEEECCH
Confidence            69999999999999999998     68999999875

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=87.24  E-value=0.53  Score=44.07  Aligned_cols=32  Identities=25%  Similarity=0.358  Sum_probs=29.2

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      +|.|||+|-.|.++|..|++.    |++|.++++++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~----g~~V~~~~~~~   33 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRR----GHYLIGVSRQQ   33 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT----TCEEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHC----CCEEEEEECCH
Confidence            699999999999999999996    89999998765

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=87.22  E-value=0.56  Score=45.95  Aligned_cols=38  Identities=29%  Similarity=0.414  Sum_probs=29.5

Q ss_pred             CCCCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           50 TNNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        50 ~~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      .++.++++|+|+|+|-.|-.+|..|++     ..+|+|.++..
T Consensus        11 ~~~g~~mkilvlGaG~vG~~~~~~L~~-----~~~v~~~~~~~   48 (365)
T 3abi_A           11 HIEGRHMKVLILGAGNIGRAIAWDLKD-----EFDVYIGDVNN   48 (365)
T ss_dssp             -----CCEEEEECCSHHHHHHHHHHTT-----TSEEEEEESCH
T ss_pred             cccCCccEEEEECCCHHHHHHHHHHhc-----CCCeEEEEcCH
Confidence            445567899999999999999999988     57999988765

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=87.19  E-value=0.35  Score=47.15  Aligned_cols=35  Identities=23%  Similarity=0.214  Sum_probs=31.5

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCC-------cEEEEEcCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKH-------LSVAIIDSNPA   93 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G-------~~V~v~E~~~~   93 (515)
                      .++|.|||+|--|.+.|..|++.    |       ++|+++++++.
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~----g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGN----AAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHH----HHHCTTEEEEEEEECCCCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHhc----CCcccCCCCeEEEEEcChh
Confidence            35899999999999999999996    8       89999998875

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=87.18  E-value=0.48  Score=48.31  Aligned_cols=34  Identities=32%  Similarity=0.395  Sum_probs=31.1

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      .+|.|||+|.-|...|..|++.    |++|+++|+++.
T Consensus         6 ~kVgVIGaG~MG~~IA~~la~a----G~~V~l~D~~~e   39 (483)
T 3mog_A            6 QTVAVIGSGTMGAGIAEVAASH----GHQVLLYDISAE   39 (483)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT----TCCEEEECSCHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHC----CCeEEEEECCHH
Confidence            4799999999999999999996    999999998864

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=87.14  E-value=0.74  Score=43.69  Aligned_cols=33  Identities=24%  Similarity=0.381  Sum_probs=29.9

Q ss_pred             ccEEEEC-CCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVG-GGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVG-gG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      .+|.||| .|-.|.++|..|++.    |++|.++++++
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~----G~~V~~~~~~~   55 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRAS----GYPISILDRED   55 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTT----TCCEEEECTTC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhC----CCeEEEEECCc
Confidence            4699999 999999999999996    89999998765

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=87.01  E-value=0.6  Score=43.65  Aligned_cols=34  Identities=18%  Similarity=0.300  Sum_probs=30.3

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ...|+|+|+|-+|.++|..|++.    |.+|+|+.|..
T Consensus       119 ~k~vlViGaGg~g~a~a~~L~~~----G~~V~v~~R~~  152 (271)
T 1nyt_A          119 GLRILLIGAGGASRGVLLPLLSL----DCAVTITNRTV  152 (271)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHc----CCEEEEEECCH
Confidence            35799999999999999999996    88999998765

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=86.93  E-value=0.58  Score=45.37  Aligned_cols=34  Identities=24%  Similarity=0.291  Sum_probs=30.8

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ..+|.|||.|.-|.++|..|++.    |++|.++++++
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~----G~~V~~~dr~~   41 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAA----NHSVFGYNRSR   41 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHT----TCCEEEECSCH
T ss_pred             CCEEEEEeecHHHHHHHHHHHHC----CCEEEEEeCCH
Confidence            35799999999999999999996    89999999876

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=86.92  E-value=0.46  Score=45.22  Aligned_cols=34  Identities=24%  Similarity=0.542  Sum_probs=28.8

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCc--EEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~--~V~v~E~~~~   93 (515)
                      .+|+|||+|-.|..+|+.|+..    |+  +|.++|....
T Consensus        15 ~kV~ViGaG~vG~~~a~~l~~~----g~~~ev~L~Di~~~   50 (303)
T 2i6t_A           15 NKITVVGGGELGIACTLAISAK----GIADRLVLLDLSEG   50 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH----TCCSEEEEECCC--
T ss_pred             CEEEEECCCHHHHHHHHHHHhc----CCCCEEEEEcCCcc
Confidence            5799999999999999999885    77  9999998763

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=86.91  E-value=0.43  Score=45.68  Aligned_cols=34  Identities=21%  Similarity=0.277  Sum_probs=30.4

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~   92 (515)
                      ..+|.|||.|.-|..+|..|++.    |+ +|+++++.+
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~----G~~~V~~~dr~~   58 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQA----GAIDMAAYDAAS   58 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHH----SCCEEEEECSSC
T ss_pred             CCEEEEECccHHHHHHHHHHHHC----CCCeEEEEcCCC
Confidence            46899999999999999999996    89 999999863

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=86.91  E-value=0.48  Score=45.34  Aligned_cols=34  Identities=29%  Similarity=0.506  Sum_probs=29.6

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCc--EEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~--~V~v~E~~~~   93 (515)
                      ++|+|||+|..|.++|+.|++.    |+  ++.++|..+.
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~----~~~~el~l~D~~~~   36 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQ----DVAKEVVMVDIKDG   36 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH----TCSSEEEEECSSTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhC----CCCCEEEEEeCchH
Confidence            3699999999999999999986    55  8999998763

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=86.83  E-value=0.56  Score=42.54  Aligned_cols=36  Identities=25%  Similarity=0.224  Sum_probs=31.3

Q ss_pred             CCccEEEECC-CHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           54 DQYDVAVVGG-GMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        54 ~~~dVvIVGg-G~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      +...|+|.|| |-.|..++..|++.    |++|+++.|.+.
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~----G~~V~~~~R~~~   56 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNK----GHEPVAMVRNEE   56 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHT----TCEEEEEESSGG
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhC----CCeEEEEECChH
Confidence            3467999998 99999999999995    999999998763

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=86.83  E-value=0.31  Score=45.98  Aligned_cols=33  Identities=27%  Similarity=0.502  Sum_probs=30.5

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      +|.|||.|-.|..+|..|++.    |++|+++++++.
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~----G~~V~~~dr~~~   35 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRA----GFDVTVWNRNPA   35 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHH----TCCEEEECSSGG
T ss_pred             eEEEEccCHHHHHHHHHHHHC----CCeEEEEcCCHH
Confidence            699999999999999999996    899999998874

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=86.75  E-value=0.7  Score=43.84  Aligned_cols=34  Identities=18%  Similarity=0.204  Sum_probs=30.4

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~   92 (515)
                      ...|+|||+|.+|.++|..|++.    |. +|+|+.|..
T Consensus       141 ~~~vlVlGaGg~g~aia~~L~~~----G~~~V~v~nR~~  175 (297)
T 2egg_A          141 GKRILVIGAGGGARGIYFSLLST----AAERIDMANRTV  175 (297)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTT----TCSEEEEECSSH
T ss_pred             CCEEEEECcHHHHHHHHHHHHHC----CCCEEEEEeCCH
Confidence            45799999999999999999996    87 999998875

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=86.74  E-value=0.43  Score=48.53  Aligned_cols=36  Identities=25%  Similarity=0.469  Sum_probs=31.1

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ++|.|||.|-.|+.+|..|++.+  .|++|+++++++.
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g--~G~~V~~~d~~~~   41 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMC--PEIRVTVVDVNES   41 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHC--TTSEEEEECSCHH
T ss_pred             cEEEEECCCHHHHHHHHHHHhcC--CCCEEEEEECCHH
Confidence            58999999999999999999852  2799999998753

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=86.68  E-value=0.54  Score=47.67  Aligned_cols=34  Identities=24%  Similarity=0.195  Sum_probs=30.6

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ...|+|||||.+|...+..|.+.    |.+|+|+++..
T Consensus        12 ~~~vlVvGgG~va~~k~~~L~~~----ga~V~vi~~~~   45 (457)
T 1pjq_A           12 DRDCLIVGGGDVAERKARLLLEA----GARLTVNALTF   45 (457)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT----TBEEEEEESSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC----cCEEEEEcCCC
Confidence            35799999999999999999996    99999999754

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=86.54  E-value=0.62  Score=45.52  Aligned_cols=34  Identities=26%  Similarity=0.507  Sum_probs=31.0

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      .|+|+|||..|..+|+.+++.    |++|+++|.++..
T Consensus         3 ~I~ilGgg~~g~~~~~~Ak~~----G~~vv~vd~~~~~   36 (363)
T 4ffl_A            3 TICLVGGKLQGFEAAYLSKKA----GMKVVLVDKNPQA   36 (363)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT----TCEEEEEESCTTC
T ss_pred             EEEEECCCHHHHHHHHHHHHC----CCEEEEEeCCCCC
Confidence            599999999999999999997    9999999987754

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=86.51  E-value=0.53  Score=45.19  Aligned_cols=35  Identities=29%  Similarity=0.478  Sum_probs=29.8

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCc--EEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~--~V~v~E~~~   92 (515)
                      +..+|+|||+|-.|.++|+.|+..    ++  .+.++|.+.
T Consensus         4 ~~~KI~IiGaG~vG~~~a~~l~~~----~~~~el~L~Di~~   40 (318)
T 1ez4_A            4 NHQKVVLVGDGAVGSSYAFAMAQQ----GIAEEFVIVDVVK   40 (318)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHH----TCCSEEEEECSSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcC----CCCCEEEEEeCCc
Confidence            457899999999999999999985    44  799999754

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=86.48  E-value=0.58  Score=47.65  Aligned_cols=35  Identities=20%  Similarity=0.350  Sum_probs=31.8

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ..+|.|||.|.-|..+|..|++.    |++|+++++.+.
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~----G~~V~v~dr~~~   38 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDH----GFVVCAFNRTVS   38 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHT----TCCEEEECSSTH
T ss_pred             CCEEEEEChhHHHHHHHHHHHHC----CCEEEEEeCCHH
Confidence            36899999999999999999996    999999998874

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=86.38  E-value=0.6  Score=47.64  Aligned_cols=36  Identities=25%  Similarity=0.406  Sum_probs=31.7

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      .+.+|.|||.|.-|..+|..|++.    |++|++++|.+.
T Consensus        14 ~~~~IgvIGlG~MG~~lA~~La~~----G~~V~v~~r~~~   49 (480)
T 2zyd_A           14 SKQQIGVVGMAVMGRNLALNIESR----GYTVSIFNRSRE   49 (480)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHTT----TCCEEEECSSHH
T ss_pred             CCCeEEEEccHHHHHHHHHHHHhC----CCeEEEEeCCHH
Confidence            456899999999999999999996    999999998753

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=86.26  E-value=0.52  Score=48.14  Aligned_cols=36  Identities=33%  Similarity=0.502  Sum_probs=31.0

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ++|.|||.|-.|+.+|..|++.+  .|++|+++|+++.
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g--~g~~V~~~D~~~~   45 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKC--PHITVTVVDMNTA   45 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHC--TTSEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcC--CCCEEEEEECCHH
Confidence            58999999999999999999852  2689999998753

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=86.18  E-value=0.52  Score=43.66  Aligned_cols=32  Identities=25%  Similarity=0.394  Sum_probs=29.2

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCC-cEEEEEcCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNP   92 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G-~~V~v~E~~~   92 (515)
                      +|.|||+|-.|.+.|..|++.    | ++|.++++++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~----g~~~v~~~~r~~   34 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQ----GGYRIYIANRGA   34 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH----CSCEEEEECSSH
T ss_pred             EEEEECchHHHHHHHHHHHHC----CCCeEEEECCCH
Confidence            699999999999999999986    8 8999998875

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=86.05  E-value=0.51  Score=47.75  Aligned_cols=35  Identities=26%  Similarity=0.300  Sum_probs=31.1

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ....|+|+|+|..|.++|..|+..    |.+|+++|+++
T Consensus       264 ~GKtVvVtGaGgIG~aiA~~Laa~----GA~Viv~D~~~  298 (488)
T 3ond_A          264 AGKVAVVAGYGDVGKGCAAALKQA----GARVIVTEIDP  298 (488)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSCH
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHC----CCEEEEEcCCH
Confidence            345799999999999999999997    89999998865

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=85.97  E-value=11  Score=40.01  Aligned_cols=37  Identities=16%  Similarity=0.143  Sum_probs=29.4

Q ss_pred             CcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHh
Q 010200          394 KRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIA  433 (515)
Q Consensus       394 ~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~  433 (515)
                      +++.+.|++.+...+   .-+.-|++++...|+.|.+.+.
T Consensus       623 grl~FAGe~ts~~~~---g~v~GAi~SG~raA~~i~~~~~  659 (662)
T 2z3y_A          623 PRLFFAGEHTIRNYP---ATVHGALLSGLREAGRIADQFL  659 (662)
T ss_dssp             CCEEECSGGGCTTST---TSHHHHHHHHHHHHHHHHHHHT
T ss_pred             CcEEEEeccccCCCC---cCHHHHHHHHHHHHHHHHHHcc
Confidence            799999999886544   3477788999988888877654

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=85.97  E-value=0.99  Score=44.40  Aligned_cols=36  Identities=25%  Similarity=0.450  Sum_probs=32.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ....|+|||+|..|..++..+++.    |++|.+++..+.
T Consensus        11 ~~~~IlIlG~G~lg~~la~aa~~l----G~~viv~d~~~~   46 (377)
T 3orq_A           11 FGATIGIIGGGQLGKMMAQSAQKM----GYKVVVLDPSED   46 (377)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT----TCEEEEEESCTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC----CCEEEEEECCCC
Confidence            345799999999999999999997    999999998764

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=85.94  E-value=0.66  Score=43.36  Aligned_cols=34  Identities=21%  Similarity=0.220  Sum_probs=30.7

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      .+|+|.|+|..|..++..|.+.    |++|+++.|.+.
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~----g~~V~~~~r~~~   39 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQ----GWRIIGTSRNPD   39 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGG----TCEEEEEESCGG
T ss_pred             CcEEEECCcHHHHHHHHHHHHC----CCEEEEEEcChh
Confidence            5799999999999999999995    999999988763

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=85.89  E-value=0.63  Score=44.76  Aligned_cols=35  Identities=29%  Similarity=0.469  Sum_probs=30.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCc--EEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~--~V~v~E~~~   92 (515)
                      ...+|+|||+|..|.++|+.|+..    |+  ++.++|...
T Consensus         8 ~~~kV~ViGaG~vG~~~a~~l~~~----~~~~el~l~D~~~   44 (326)
T 3vku_A            8 DHQKVILVGDGAVGSSYAYAMVLQ----GIAQEIGIVDIFK   44 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHH----TCCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC----CCCCeEEEEeCCh
Confidence            346899999999999999999986    55  899999854

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=85.81  E-value=0.66  Score=44.45  Aligned_cols=36  Identities=28%  Similarity=0.478  Sum_probs=29.5

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ..+|+|||+|..|.++|+.|+..+.  ..+|.++|.+.
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~--~~ev~l~Di~~   41 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGI--ADEIVLIDANE   41 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTC--CSEEEEECSSH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC--CCEEEEEeCCc
Confidence            4689999999999999999988521  23899999865

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=85.78  E-value=0.54  Score=44.90  Aligned_cols=33  Identities=30%  Similarity=0.421  Sum_probs=29.5

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCC--cEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKH--LSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G--~~V~v~E~~~   92 (515)
                      .+|+|||+|-.|.++|..|++.    |  .+|+++|++.
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~----g~~~~V~l~d~~~   36 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQ----GVADDYVFIDANE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH----TCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC----CCCCEEEEEcCCH
Confidence            3699999999999999999986    6  6999999875

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=85.78  E-value=0.56  Score=46.64  Aligned_cols=35  Identities=29%  Similarity=0.380  Sum_probs=31.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ....|+|||.|..|..+|..|+..    |.+|+++|+++
T Consensus       219 ~GktV~ViG~G~IGk~vA~~Lra~----Ga~Viv~D~dp  253 (435)
T 3gvp_A          219 GGKQVVVCGYGEVGKGCCAALKAM----GSIVYVTEIDP  253 (435)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSCH
T ss_pred             cCCEEEEEeeCHHHHHHHHHHHHC----CCEEEEEeCCh
Confidence            345799999999999999999986    89999999876

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=85.77  E-value=0.91  Score=44.82  Aligned_cols=36  Identities=22%  Similarity=0.494  Sum_probs=31.8

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ....|+|||+|..|..+|..+++.    |++|.+++..+.
T Consensus        13 ~~k~IlIlG~G~~g~~la~aa~~~----G~~vi~~d~~~~   48 (389)
T 3q2o_A           13 PGKTIGIIGGGQLGRMMALAAKEM----GYKIAVLDPTKN   48 (389)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc----CCEEEEEeCCCC
Confidence            345799999999999999999997    999999997654

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=85.71  E-value=0.84  Score=42.92  Aligned_cols=33  Identities=24%  Similarity=0.434  Sum_probs=30.1

Q ss_pred             ccEEEECC-CHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGG-GMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGg-G~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      .+|.|||+ |-.|..+|..|++.    |++|+++++.+
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~----g~~V~~~~r~~   45 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDS----AHHLAAIEIAP   45 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHS----SSEEEEECCSH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC----CCEEEEEECCH
Confidence            47999999 99999999999996    89999998765

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=85.65  E-value=0.8  Score=44.03  Aligned_cols=34  Identities=38%  Similarity=0.425  Sum_probs=29.9

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCc--EEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~--~V~v~E~~~   92 (515)
                      ..+|.|||+|..|.++|+.|+..    |+  ++.++|...
T Consensus        21 ~~kV~ViGaG~vG~~~a~~la~~----g~~~ev~L~Di~~   56 (330)
T 3ldh_A           21 YNKITVVGCDAVGMADAISVLMK----DLADEVALVDVME   56 (330)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHHH----CCCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC----CCCCeEEEEECCH
Confidence            46899999999999999999985    66  899999855

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=85.51  E-value=0.67  Score=47.46  Aligned_cols=36  Identities=17%  Similarity=0.254  Sum_probs=32.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      .+.+|.|||.|.-|..+|..|++.    |++|++++|.+.
T Consensus         9 ~~~~IgvIGlG~MG~~lA~~La~~----G~~V~v~dr~~~   44 (497)
T 2p4q_A            9 MSADFGLIGLAVMGQNLILNAADH----GFTVCAYNRTQS   44 (497)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSH
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHHC----CCEEEEEeCCHH
Confidence            346899999999999999999996    999999998763

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=85.45  E-value=0.57  Score=44.25  Aligned_cols=33  Identities=27%  Similarity=0.364  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      +|.|||+|-.|...|..|++.    |++|.++++++.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~----g~~V~~~~~~~~   34 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKH----GYPLIIYDVFPD   34 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHT----TCCEEEECSSTH
T ss_pred             eEEEEeccHHHHHHHHHHHHC----CCEEEEEeCCHH
Confidence            699999999999999999996    899999998763

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=85.39  E-value=0.93  Score=43.65  Aligned_cols=35  Identities=40%  Similarity=0.509  Sum_probs=30.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCc--EEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~--~V~v~E~~~   92 (515)
                      ...+|+|||+|-.|.++|+.|+..    |+  ++.++|...
T Consensus        18 ~~~kV~ViGaG~vG~~~a~~l~~~----~~~~el~L~Di~~   54 (331)
T 4aj2_A           18 PQNKITVVGVGAVGMACAISILMK----DLADELALVDVIE   54 (331)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHT----TCCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC----CCCceEEEEeCCh
Confidence            457899999999999999999885    65  899999764

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=85.34  E-value=0.75  Score=43.10  Aligned_cols=32  Identities=34%  Similarity=0.464  Sum_probs=29.0

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCc--EEEEEcCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNP   92 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~--~V~v~E~~~   92 (515)
                      +|.|||+|..|.++|..|++.    |+  +|+++++++
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~----g~~~~V~~~d~~~   36 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRS----GFKGKIYGYDINP   36 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHT----TCCSEEEEECSCH
T ss_pred             EEEEEecCHHHHHHHHHHHhc----CCCcEEEEEeCCH
Confidence            699999999999999999996    77  899998765

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=85.32  E-value=0.71  Score=43.38  Aligned_cols=34  Identities=12%  Similarity=0.348  Sum_probs=30.6

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCc---EEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHL---SVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~---~V~v~E~~~   92 (515)
                      ..+|.|||+|--|.+.|..|.+.    |+   +|.++++++
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~----g~~~~~V~v~dr~~   39 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIAN----GYDPNRICVTNRSL   39 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHT----TCCGGGEEEECSSS
T ss_pred             CCEEEEEcccHHHHHHHHHHHHC----CCCCCeEEEEeCCH
Confidence            36799999999999999999996    77   899999876

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=85.23  E-value=0.59  Score=47.65  Aligned_cols=35  Identities=23%  Similarity=0.323  Sum_probs=31.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ....|+|||.|..|..+|..|+..    |.+|+++|+.+
T Consensus       273 ~GktV~IiG~G~IG~~~A~~lka~----Ga~Viv~d~~~  307 (494)
T 3ce6_A          273 GGKKVLICGYGDVGKGCAEAMKGQ----GARVSVTEIDP  307 (494)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSCH
T ss_pred             CcCEEEEEccCHHHHHHHHHHHHC----CCEEEEEeCCH
Confidence            345799999999999999999986    89999999876

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=85.23  E-value=0.89  Score=44.79  Aligned_cols=37  Identities=22%  Similarity=0.213  Sum_probs=33.4

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ....++|+|||..|.++|..++..    |++|+|+|.++..
T Consensus       203 P~~rL~IfGAGhva~ala~~a~~l----g~~V~v~D~R~~~  239 (386)
T 2we8_A          203 PRPRMLVFGAIDFAAAVAQQGAFL----GYRVTVCDARPVF  239 (386)
T ss_dssp             CCCEEEEECCSTHHHHHHHHHHHT----TCEEEEEESCTTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC----CCEEEEECCchhh
Confidence            346899999999999999999997    9999999988764

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=85.06  E-value=0.83  Score=43.38  Aligned_cols=35  Identities=29%  Similarity=0.396  Sum_probs=31.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ....|.|||+|..|..+|..|+..    |.+|+++++..
T Consensus       156 ~g~~v~IiG~G~iG~~~a~~l~~~----G~~V~~~d~~~  190 (300)
T 2rir_A          156 HGSQVAVLGLGRTGMTIARTFAAL----GANVKVGARSS  190 (300)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSH
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHC----CCEEEEEECCH
Confidence            446799999999999999999986    89999999875

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=85.00  E-value=0.94  Score=41.79  Aligned_cols=33  Identities=18%  Similarity=0.262  Sum_probs=29.9

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ++|.|||.|-.|...|..|++.    |++|.++++++
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~----g~~v~~~~~~~   36 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQT----PHELIISGSSL   36 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTS----SCEEEEECSSH
T ss_pred             cEEEEECCCHHHHHHHHHHHhC----CCeEEEECCCH
Confidence            5799999999999999999986    88999998875

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=84.95  E-value=0.85  Score=43.15  Aligned_cols=35  Identities=31%  Similarity=0.413  Sum_probs=31.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ....|.|||.|..|..+|..|+..    |.+|+++++..
T Consensus       154 ~g~~v~IiG~G~iG~~~a~~l~~~----G~~V~~~dr~~  188 (293)
T 3d4o_A          154 HGANVAVLGLGRVGMSVARKFAAL----GAKVKVGARES  188 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSH
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhC----CCEEEEEECCH
Confidence            346799999999999999999986    89999999875

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=84.83  E-value=0.73  Score=47.06  Aligned_cols=34  Identities=18%  Similarity=0.334  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ++|.|||.|.-|..+|..|++.    |++|.++++.+.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~----G~~V~v~dr~~~   36 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDH----GFVVCAFNRTVS   36 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT----TCCEEEECSSTH
T ss_pred             CeEEEEChHHHHHHHHHHHHHC----CCeEEEEeCCHH
Confidence            5799999999999999999996    899999998763

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=84.65  E-value=0.91  Score=40.38  Aligned_cols=32  Identities=19%  Similarity=0.298  Sum_probs=29.2

Q ss_pred             cEEEECC-CHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           57 DVAVVGG-GMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        57 dVvIVGg-G~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      +|+|.|| |..|..++..|.+.    |++|.++.|++
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~----g~~V~~~~R~~   34 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNR----GHEVTAIVRNA   34 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT----TCEEEEEESCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhC----CCEEEEEEcCc
Confidence            5999996 99999999999995    99999999875

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=84.53  E-value=0.51  Score=46.45  Aligned_cols=34  Identities=12%  Similarity=0.168  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCC-------cEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKH-------LSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G-------~~V~v~E~~~~   93 (515)
                      .+|.|||+|--|.++|..|++.    |       ++|+++++.+.
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~----G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTN----AKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHH----HHHCTTBCSCEEEECCSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHc----CCccCCCCCeEEEEECChh
Confidence            4799999999999999999986    8       89999998764

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=84.44  E-value=0.91  Score=42.45  Aligned_cols=34  Identities=21%  Similarity=0.310  Sum_probs=30.8

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ..|+|.|+|..|..++..|.+.    |++|+++.|...
T Consensus         4 ~~ilVtGaG~iG~~l~~~L~~~----g~~V~~~~r~~~   37 (286)
T 3gpi_A            4 SKILIAGCGDLGLELARRLTAQ----GHEVTGLRRSAQ   37 (286)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT----TCCEEEEECTTS
T ss_pred             CcEEEECCCHHHHHHHHHHHHC----CCEEEEEeCCcc
Confidence            4799999999999999999996    899999998764

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=84.44  E-value=0.79  Score=42.29  Aligned_cols=35  Identities=23%  Similarity=0.365  Sum_probs=30.7

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~   93 (515)
                      ..+|+|||+|-.|..+|..|++.    |. +++|+|.+..
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~----Gvg~i~lvD~d~v   63 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGA----GVGTLVLADDDDV   63 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHT----TCSEEEEECCCBC
T ss_pred             cCcEEEEccCHHHHHHHHHHHHc----CCCeEEEEeCCCc
Confidence            46899999999999999999997    55 7999998763

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=84.28  E-value=0.71  Score=43.29  Aligned_cols=35  Identities=11%  Similarity=0.227  Sum_probs=31.0

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~   93 (515)
                      ...|+|+|+|-+|.++|..|++.    |. +|+|+.|...
T Consensus       117 ~k~vlvlGaGg~g~aia~~L~~~----G~~~v~v~~R~~~  152 (277)
T 3don_A          117 DAYILILGAGGASKGIANELYKI----VRPTLTVANRTMS  152 (277)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHTT----CCSCCEEECSCGG
T ss_pred             CCEEEEECCcHHHHHHHHHHHHC----CCCEEEEEeCCHH
Confidence            35799999999999999999996    87 8999998764

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=84.25  E-value=0.77  Score=46.80  Aligned_cols=33  Identities=36%  Similarity=0.532  Sum_probs=30.2

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ++|.|||+|--|..+|..|++.    |++|++++|.+
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~----G~~V~v~dr~~   34 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEK----GFKVAVFNRTY   34 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT----TCCEEEECSSH
T ss_pred             CEEEEEChHHHHHHHHHHHHHC----CCEEEEEeCCH
Confidence            4799999999999999999996    89999999865

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=84.23  E-value=1.4  Score=42.78  Aligned_cols=35  Identities=23%  Similarity=0.216  Sum_probs=29.6

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      .-.|+|+|+|+.|++++..++..    |.+|+++++.+.
T Consensus       177 g~~VlV~GaG~vG~~a~qla~~~----Ga~Vi~~~~~~~  211 (348)
T 3two_A          177 GTKVGVAGFGGLGSMAVKYAVAM----GAEVSVFARNEH  211 (348)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHT----TCEEEEECSSST
T ss_pred             CCEEEEECCcHHHHHHHHHHHHC----CCeEEEEeCCHH
Confidence            35799999999999988888775    899999987763

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=84.21  E-value=0.69  Score=43.25  Aligned_cols=34  Identities=12%  Similarity=0.208  Sum_probs=30.6

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ...|+|+|+|-+|.++|..|++.    |.+|+|+.|..
T Consensus       119 ~~~vlvlGaGg~g~a~a~~L~~~----G~~v~v~~R~~  152 (272)
T 1p77_A          119 NQHVLILGAGGATKGVLLPLLQA----QQNIVLANRTF  152 (272)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHT----TCEEEEEESSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHC----CCEEEEEECCH
Confidence            45799999999999999999996    89999998875

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=83.73  E-value=1.1  Score=48.24  Aligned_cols=34  Identities=29%  Similarity=0.543  Sum_probs=31.1

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      .+|.|||+|.-|...|..|++.    |++|+++|+++.
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~a----G~~V~l~D~~~~  346 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILS----NYPVILKEVNEK  346 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTT----TCCEEEECSSHH
T ss_pred             cEEEEEcCCHhhHHHHHHHHhC----CCEEEEEECCHH
Confidence            4699999999999999999996    999999998863

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=83.57  E-value=0.68  Score=43.92  Aligned_cols=35  Identities=17%  Similarity=0.253  Sum_probs=27.4

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      .+|.+||-|.-|...|..|.+.    |++|++|++.+..
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~----G~~V~v~dr~~~~   40 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEA----GYELVVWNRTASK   40 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT----TCEEEEC------
T ss_pred             CcEEEEecHHHHHHHHHHHHHC----CCeEEEEeCCHHH
Confidence            4699999999999999999996    9999999987754

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=83.52  E-value=0.97  Score=41.44  Aligned_cols=33  Identities=21%  Similarity=0.420  Sum_probs=29.9

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCc----EEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHL----SVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~----~V~v~E~~~   92 (515)
                      .+|.|||+|--|.+.|..|.+.    |+    +|.++++++
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~----g~~~~~~V~~~~r~~   39 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINK----NIVSSNQIICSDLNT   39 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT----TSSCGGGEEEECSCH
T ss_pred             CeEEEECccHHHHHHHHHHHhC----CCCCCCeEEEEeCCH
Confidence            4799999999999999999996    77    999999876

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=83.46  E-value=1.4  Score=44.07  Aligned_cols=36  Identities=33%  Similarity=0.541  Sum_probs=31.6

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ....|+|+|||..|..++..+++.    |++|.+++..+.
T Consensus        34 ~~~~IlIlG~G~lg~~~~~aa~~l----G~~v~v~d~~~~   69 (419)
T 4e4t_A           34 PGAWLGMVGGGQLGRMFCFAAQSM----GYRVAVLDPDPA   69 (419)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSCTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC----CCEEEEECCCCc
Confidence            345799999999999999999997    999999987654

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=83.44  E-value=0.97  Score=43.25  Aligned_cols=33  Identities=27%  Similarity=0.362  Sum_probs=29.0

Q ss_pred             ccEEEECC-CHHHHHHHHHHhcCCCCCC--cEEEEEcCCC
Q 010200           56 YDVAVVGG-GMVGMALACSLASMPLTKH--LSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGg-G~aGl~~A~~L~~~~~~~G--~~V~v~E~~~   92 (515)
                      ++|+|||| |-.|.++|..|+..    |  ..+.++|...
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~----~~~~ev~L~Di~~   36 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNS----PLVSRLTLYDIAH   36 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTC----TTCSEEEEEESSS
T ss_pred             CEEEEECCCChHHHHHHHHHHhC----CCCcEEEEEeCCc
Confidence            36999998 99999999999985    5  6899999875

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=83.42  E-value=1.1  Score=43.22  Aligned_cols=35  Identities=17%  Similarity=0.412  Sum_probs=30.8

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~   93 (515)
                      ..+|+|||+|-.|..+|..|++.    |. +++|+|.+..
T Consensus        34 ~~~VlIvGaGGlGs~va~~La~a----GVg~ItlvD~D~V   69 (340)
T 3rui_A           34 NTKVLLLGAGTLGCYVSRALIAW----GVRKITFVDNGTV   69 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT----TCCEEEEECCCBC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc----CCCEEEEecCCEe
Confidence            46899999999999999999998    54 7999998764

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=83.40  E-value=0.77  Score=43.32  Aligned_cols=37  Identities=27%  Similarity=0.343  Sum_probs=31.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ...+|+|||+|-.|..+|..|+++|+   -+++|+|.+..
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~aGV---G~i~lvD~D~V   71 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRCGI---GKLLLFDYDKV   71 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHHTC---SEEEEECCCBC
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHcCC---CEEEEECCCcc
Confidence            34689999999999999999999842   37999998764

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=83.38  E-value=1  Score=43.56  Aligned_cols=36  Identities=28%  Similarity=0.472  Sum_probs=28.9

Q ss_pred             CccEEEECC-CHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGG-GMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGg-G~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ..+|+|||+ |-.|.++|+.|+..+.  ..+|.++|...
T Consensus         8 ~~KV~ViGaaG~VG~~~a~~l~~~g~--~~evvLiDi~~   44 (343)
T 3fi9_A            8 EEKLTIVGAAGMIGSNMAQTAAMMRL--TPNLCLYDPFA   44 (343)
T ss_dssp             SSEEEEETTTSHHHHHHHHHHHHTTC--CSCEEEECSCH
T ss_pred             CCEEEEECCCChHHHHHHHHHHhcCC--CCEEEEEeCCc
Confidence            468999998 9999999999988621  13799999754

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=83.30  E-value=0.81  Score=42.85  Aligned_cols=34  Identities=18%  Similarity=0.236  Sum_probs=30.4

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ..+|+|||+|-+|.++|..|.+.    |.+|++++|..
T Consensus       129 ~~~v~iiGaG~~g~aia~~L~~~----g~~V~v~~r~~  162 (275)
T 2hk9_A          129 EKSILVLGAGGASRAVIYALVKE----GAKVFLWNRTK  162 (275)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHH----TCEEEEECSSH
T ss_pred             CCEEEEECchHHHHHHHHHHHHc----CCEEEEEECCH
Confidence            35799999999999999999996    78999999875

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=83.29  E-value=0.86  Score=47.55  Aligned_cols=35  Identities=23%  Similarity=0.319  Sum_probs=32.6

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ..|+|||+|..|..+|..|.+.    |++|+++|+++..
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~----g~~v~vid~d~~~  383 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRK----PVPFILIDRQESP  383 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT----TCCEEEEESSCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHHC----CCCEEEEECChHH
Confidence            6799999999999999999996    9999999999865

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=83.25  E-value=1.3  Score=41.76  Aligned_cols=33  Identities=21%  Similarity=0.336  Sum_probs=29.2

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ...|+|+|+|-+|.++|..|++.    | +|+|+.|..
T Consensus       128 ~k~vlV~GaGgiG~aia~~L~~~----G-~V~v~~r~~  160 (287)
T 1nvt_A          128 DKNIVIYGAGGAARAVAFELAKD----N-NIIIANRTV  160 (287)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSS----S-EEEEECSSH
T ss_pred             CCEEEEECchHHHHHHHHHHHHC----C-CEEEEECCH
Confidence            35799999999999999999996    9 999998764

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=83.22  E-value=1  Score=45.61  Aligned_cols=34  Identities=35%  Similarity=0.549  Sum_probs=30.3

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      .-+|+|+|||-.|..+|..|.+     +++|.|+|++..
T Consensus       235 ~~~v~I~GgG~ig~~lA~~L~~-----~~~v~iIE~d~~  268 (461)
T 4g65_A          235 YRRIMIVGGGNIGASLAKRLEQ-----TYSVKLIERNLQ  268 (461)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTT-----TSEEEEEESCHH
T ss_pred             ccEEEEEcchHHHHHHHHHhhh-----cCceEEEecCHH
Confidence            3579999999999999999977     689999999864

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=83.17  E-value=0.98  Score=44.90  Aligned_cols=36  Identities=28%  Similarity=0.454  Sum_probs=31.7

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      |+....|+|+|||..|..++..+++.    |++|.+++ .+
T Consensus        21 mm~~~~I~ilGgG~lg~~l~~aa~~l----G~~v~~~d-~~   56 (403)
T 3k5i_A           21 MWNSRKVGVLGGGQLGRMLVESANRL----NIQVNVLD-AD   56 (403)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHH----TCEEEEEE-ST
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHC----CCEEEEEE-CC
Confidence            44457899999999999999999997    99999999 54

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=83.15  E-value=1.2  Score=38.98  Aligned_cols=34  Identities=15%  Similarity=0.351  Sum_probs=30.7

Q ss_pred             ccEEEECC-CHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           56 YDVAVVGG-GMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGg-G~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ..|+|.|| |..|..++..|.+.    |++|.++.|.+.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~----g~~V~~~~r~~~   38 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQA----GYEVTVLVRDSS   38 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHT----TCEEEEEESCGG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHC----CCeEEEEEeChh
Confidence            57999999 99999999999996    899999998764

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=83.07  E-value=1  Score=43.30  Aligned_cols=37  Identities=27%  Similarity=0.420  Sum_probs=29.6

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ++.+|+|||+|-.|.++|+.|+..+.  .-.+.++|.+.
T Consensus         8 ~~~KI~IiGaG~vG~~la~~l~~~~~--~~el~L~Di~~   44 (326)
T 2zqz_A            8 DHQKVILVGDGAVGSSYAYAMVLQGI--AQEIGIVDIFK   44 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTC--CSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcCCC--CCEEEEEeCCc
Confidence            34789999999999999999988521  22799998754

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=83.05  E-value=1.1  Score=39.94  Aligned_cols=32  Identities=25%  Similarity=0.406  Sum_probs=29.2

Q ss_pred             cEEEECC-CHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           57 DVAVVGG-GMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        57 dVvIVGg-G~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      +|+|.|| |..|..++..|.+.    |++|.++.|.+
T Consensus         2 kilVtGatG~iG~~l~~~L~~~----g~~V~~~~R~~   34 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRR----GHEVLAVVRDP   34 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT----TCEEEEEESCH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHC----CCEEEEEEecc
Confidence            5999998 99999999999995    99999998875

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=83.03  E-value=1  Score=45.88  Aligned_cols=34  Identities=32%  Similarity=0.410  Sum_probs=30.9

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ..+|.|||.|.-|..+|..|++.    |++|.++++.+
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~----G~~V~v~dr~~   38 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESR----GYTVAIYNRTT   38 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHT----TCCEEEECSSH
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhC----CCEEEEEcCCH
Confidence            46899999999999999999996    89999999875

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=82.93  E-value=1.1  Score=40.02  Aligned_cols=35  Identities=23%  Similarity=0.396  Sum_probs=31.0

Q ss_pred             ccEEEECC-CHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           56 YDVAVVGG-GMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIVGg-G~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ..|+|.|| |..|..++..|.+.    |++|.++.|.+..
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~----g~~V~~~~r~~~~   40 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNR----GFEVTAVVRHPEK   40 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTT----TCEEEEECSCGGG
T ss_pred             CEEEEEcCCchHHHHHHHHHHHC----CCEEEEEEcCccc
Confidence            57999996 99999999999996    8999999998643

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=82.90  E-value=1  Score=43.53  Aligned_cols=33  Identities=30%  Similarity=0.391  Sum_probs=30.0

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ..|.|||.|-.|.+.|..|++.    |++|+++++.+
T Consensus        17 ~~I~IIG~G~mG~alA~~L~~~----G~~V~~~~~~~   49 (338)
T 1np3_A           17 KKVAIIGYGSQGHAHACNLKDS----GVDVTVGLRSG   49 (338)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHT----TCCEEEECCTT
T ss_pred             CEEEEECchHHHHHHHHHHHHC----cCEEEEEECCh
Confidence            4699999999999999999996    89999999875

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=82.87  E-value=1.1  Score=42.66  Aligned_cols=34  Identities=29%  Similarity=0.288  Sum_probs=29.9

Q ss_pred             CCccEEEECCC-HHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 010200           54 DQYDVAVVGGG-MVGMALACSLASMPLTKHLSVAIIDSN   91 (515)
Q Consensus        54 ~~~dVvIVGgG-~aGl~~A~~L~~~~~~~G~~V~v~E~~   91 (515)
                      ...+|+|||+| ++|..+|..|.+.    |..|+|++|.
T Consensus       176 ~gk~vvVIG~G~iVG~~~A~~L~~~----gAtVtv~nR~  210 (320)
T 1edz_A          176 YGKKCIVINRSEIVGRPLAALLAND----GATVYSVDVN  210 (320)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTT----SCEEEEECSS
T ss_pred             CCCEEEEECCCcchHHHHHHHHHHC----CCEEEEEeCc
Confidence            45689999999 6899999999996    8999999876

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=82.64  E-value=0.75  Score=42.69  Aligned_cols=33  Identities=18%  Similarity=0.300  Sum_probs=29.6

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcE-EEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLS-VAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~-V~v~E~~~   92 (515)
                      ++|.|||+|-.|...|..|++.    |++ |.++++.+
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~----g~~~v~~~~~~~   44 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRK----GFRIVQVYSRTE   44 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHH----TCCEEEEECSSH
T ss_pred             CeEEEEcCCHHHHHHHHHHHHC----CCeEEEEEeCCH
Confidence            5799999999999999999986    888 89998765

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=82.64  E-value=1  Score=41.54  Aligned_cols=33  Identities=24%  Similarity=0.370  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~   93 (515)
                      .|+|||+|-+|-+++..|.+.    |. +|+|+.|...
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~----G~~~I~v~nR~~~  143 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQM----GVKDIWVVNRTIE  143 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT----TCCCEEEEESCHH
T ss_pred             eEEEECcHHHHHHHHHHHHHc----CCCEEEEEeCCHH
Confidence            899999999999999999996    77 8999998753

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=82.62  E-value=1  Score=43.37  Aligned_cols=34  Identities=21%  Similarity=0.356  Sum_probs=29.2

Q ss_pred             CCccEEEECC-CHHHHHHHHHHhcCCCCCCc-------EEEEEcCC
Q 010200           54 DQYDVAVVGG-GMVGMALACSLASMPLTKHL-------SVAIIDSN   91 (515)
Q Consensus        54 ~~~dVvIVGg-G~aGl~~A~~L~~~~~~~G~-------~V~v~E~~   91 (515)
                      ++++|+|+|| |-.|.+++..|...    |+       .|.++|..
T Consensus         4 ~~~KI~ViGaaG~VG~~l~~~L~~~----~~~~~~~~~ev~l~Di~   45 (329)
T 1b8p_A            4 TPMRVAVTGAAGQICYSLLFRIANG----DMLGKDQPVILQLLEIP   45 (329)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTT----TTTCTTCCEEEEEECCS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhC----CCcCCCCCCEEEEEcCC
Confidence            3578999998 99999999999885    54       79999876

>3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans}

Probab=82.53  E-value=0.73  Score=44.81  Aligned_cols=36  Identities=14%  Similarity=0.165  Sum_probs=32.9

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ...++|+|||..+.++|..++..    |++|+|+|.++..
T Consensus       199 ~~~L~I~GaGhva~aLa~la~~l----gf~V~v~D~R~~~  234 (362)
T 3on5_A          199 KERLIIFGAGPDVPPLVTFASNV----GFYTVVTDWRPNQ  234 (362)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHH----TEEEEEEESCGGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC----CCeEEEECCCccc
Confidence            56899999999999999999997    9999999988754

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=82.53  E-value=0.97  Score=44.39  Aligned_cols=35  Identities=17%  Similarity=0.243  Sum_probs=31.8

Q ss_pred             CCccEEEECC-CHHHHHHHHHHhcCCCCCCc---EEEEEcCCC
Q 010200           54 DQYDVAVVGG-GMVGMALACSLASMPLTKHL---SVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGg-G~aGl~~A~~L~~~~~~~G~---~V~v~E~~~   92 (515)
                      ...+|+|||| |.+|+.++..+...    |.   +|+++|.+.
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~l----Ga~~~~V~v~D~~~  251 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHKV----GIPDANILKWDIKE  251 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHT----TCCGGGEEEECHHH
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhC----CCCcCceEEeeccc
Confidence            4678999999 99999999999998    87   999999876

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=82.45  E-value=1.3  Score=41.62  Aligned_cols=35  Identities=29%  Similarity=0.390  Sum_probs=30.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~   92 (515)
                      ....|+|+|+|-+|.+++..|++.    |. +|+|+.|..
T Consensus       126 ~~k~vlVlGaGG~g~aia~~L~~~----G~~~v~i~~R~~  161 (283)
T 3jyo_A          126 KLDSVVQVGAGGVGNAVAYALVTH----GVQKLQVADLDT  161 (283)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHT----TCSEEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHC----CCCEEEEEECCH
Confidence            345799999999999999999996    87 799998875

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=82.37  E-value=1.6  Score=41.71  Aligned_cols=36  Identities=19%  Similarity=0.359  Sum_probs=31.2

Q ss_pred             CCccEEEECC-CHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           54 DQYDVAVVGG-GMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        54 ~~~dVvIVGg-G~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ....|+|.|| |..|..++..|++.    |++|+++.|...
T Consensus        19 ~~~~vlVTGasG~iG~~l~~~L~~~----g~~V~~~~r~~~   55 (330)
T 2pzm_A           19 SHMRILITGGAGCLGSNLIEHWLPQ----GHEILVIDNFAT   55 (330)
T ss_dssp             TCCEEEEETTTSHHHHHHHHHHGGG----TCEEEEEECCSS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC----CCEEEEEECCCc
Confidence            3467999998 99999999999996    899999998653

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=82.25  E-value=1.5  Score=41.15  Aligned_cols=35  Identities=11%  Similarity=0.194  Sum_probs=30.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~   92 (515)
                      ....|+|+|+|-+|.++|..|++.    |. +|+|+.|..
T Consensus       125 ~~k~vlvlGaGg~g~aia~~L~~~----G~~~v~v~~R~~  160 (281)
T 3o8q_A          125 KGATILLIGAGGAARGVLKPLLDQ----QPASITVTNRTF  160 (281)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTT----CCSEEEEEESSH
T ss_pred             cCCEEEEECchHHHHHHHHHHHhc----CCCeEEEEECCH
Confidence            346799999999999999999996    85 999998865

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=82.17  E-value=0.96  Score=41.84  Aligned_cols=30  Identities=30%  Similarity=0.273  Sum_probs=27.4

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDS   90 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~   90 (515)
                      +|.|||+|-.|..+|..|++.    |++|+++++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~----g~~V~~~~~   31 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSR----GVEVVTSLE   31 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHT----TCEEEECCT
T ss_pred             eEEEEechHHHHHHHHHHHHC----CCeEEEeCC
Confidence            699999999999999999996    899999866

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=81.93  E-value=1.1  Score=42.95  Aligned_cols=34  Identities=24%  Similarity=0.431  Sum_probs=29.1

Q ss_pred             CccEEEECC-CHHHHHHHHHHhcCCCCCCc-------EEEEEcCCC
Q 010200           55 QYDVAVVGG-GMVGMALACSLASMPLTKHL-------SVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGg-G~aGl~~A~~L~~~~~~~G~-------~V~v~E~~~   92 (515)
                      +++|+|+|| |..|..++..|.+.    |+       +|.++|+..
T Consensus         4 ~mkVlVtGaaGfIG~~l~~~L~~~----g~~~~~~~~ev~l~D~~~   45 (327)
T 1y7t_A            4 PVRVAVTGAAGQIGYSLLFRIAAG----EMLGKDQPVILQLLEIPQ   45 (327)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTT----TTTCTTCCEEEEEECCGG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhC----CCCCCCCCCEEEEEeCCC
Confidence            468999998 99999999999985    64       899998754

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=81.79  E-value=1.4  Score=42.17  Aligned_cols=35  Identities=14%  Similarity=0.210  Sum_probs=30.7

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~   92 (515)
                      ....|+|+|+|-+|.++|..|++.    |. +|+|+.|..
T Consensus       153 ~gk~~lVlGaGG~g~aia~~L~~~----Ga~~V~i~nR~~  188 (315)
T 3tnl_A          153 IGKKMTICGAGGAATAICIQAALD----GVKEISIFNRKD  188 (315)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHT----TCSEEEEEECSS
T ss_pred             cCCEEEEECCChHHHHHHHHHHHC----CCCEEEEEECCC
Confidence            345799999999999999999996    87 899999874

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=81.79  E-value=1.4  Score=41.46  Aligned_cols=35  Identities=31%  Similarity=0.492  Sum_probs=30.9

Q ss_pred             ccEEEECC-CHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           56 YDVAVVGG-GMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIVGg-G~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ++|+|.|| |..|..++..|.+.    |++|+++-|++..
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~----G~~V~~l~R~~~~   36 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNAR----GHEVTLVSRKPGP   36 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT----TCEEEEEESSCCT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC----CCEEEEEECCCCc
Confidence            46999999 99999999999985    9999999887643

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=81.69  E-value=1  Score=45.06  Aligned_cols=34  Identities=26%  Similarity=0.371  Sum_probs=31.2

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      .+.-|||.|-.|+.+|..|++.    |++|+++|+++.
T Consensus        12 ~~~~ViGlGyvGlp~A~~La~~----G~~V~~~D~~~~   45 (431)
T 3ojo_A           12 SKLTVVGLGYIGLPTSIMFAKH----GVDVLGVDINQQ   45 (431)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT----TCEEEEECSCHH
T ss_pred             CccEEEeeCHHHHHHHHHHHHC----CCEEEEEECCHH
Confidence            5688999999999999999996    999999999874

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=81.64  E-value=1.1  Score=43.24  Aligned_cols=34  Identities=24%  Similarity=0.356  Sum_probs=29.4

Q ss_pred             CccEEEEC-CCHHHHHHHHHHhcCCCCCC--cEEEEEcCCC
Q 010200           55 QYDVAVVG-GGMVGMALACSLASMPLTKH--LSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVG-gG~aGl~~A~~L~~~~~~~G--~~V~v~E~~~   92 (515)
                      .++|+||| +|..|.+++..|+..    |  .+|.++|...
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~~~----g~~~ev~l~Di~~   44 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMKMN----PLVSVLHLYDVVN   44 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHHHC----TTEEEEEEEESSS
T ss_pred             CCEEEEECCCChHHHHHHHHHHhC----CCCCEEEEEeCCC
Confidence            46899999 799999999999885    6  7899999765

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=81.49  E-value=1.1  Score=44.71  Aligned_cols=35  Identities=26%  Similarity=0.368  Sum_probs=31.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ....|+|||.|..|..+|..|+..    |.+|+++|+++
T Consensus       210 ~GktVgIiG~G~IG~~vA~~Lka~----Ga~Viv~D~~p  244 (436)
T 3h9u_A          210 AGKTACVCGYGDVGKGCAAALRGF----GARVVVTEVDP  244 (436)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSCH
T ss_pred             cCCEEEEEeeCHHHHHHHHHHHHC----CCEEEEECCCh
Confidence            346799999999999999999997    89999999875

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=81.37  E-value=1.1  Score=45.80  Aligned_cols=50  Identities=6%  Similarity=0.036  Sum_probs=39.3

Q ss_pred             HHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200          179 SCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR  249 (515)
Q Consensus       179 ~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~  249 (515)
                      +.+++.| ++|+++++|++++.                    ++....+.+.+|+++.+|.||.|.|.++.
T Consensus       265 ~~l~~~G-V~v~~~~~v~~i~~--------------------~~~v~~v~~~~g~~i~aD~Vv~a~G~~p~  314 (493)
T 1y56_A          265 QELERWG-IDYVHIPNVKRVEG--------------------NEKVERVIDMNNHEYKVDALIFADGRRPD  314 (493)
T ss_dssp             HHHHHHT-CEEEECSSEEEEEC--------------------SSSCCEEEETTCCEEECSEEEECCCEEEC
T ss_pred             HHHHhCC-cEEEeCCeeEEEec--------------------CCceEEEEeCCCeEEEeCEEEECCCcCcC
Confidence            5566667 99999999999964                    22334566788889999999999998754

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=81.24  E-value=1.8  Score=42.44  Aligned_cols=33  Identities=27%  Similarity=0.269  Sum_probs=28.2

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~   92 (515)
                      -.|+|+|+|+.|++++..++..    |. +|+++++.+
T Consensus       197 ~~VlV~GaG~vG~~aiqlak~~----Ga~~Vi~~~~~~  230 (376)
T 1e3i_A          197 STCAVFGLGCVGLSAIIGCKIA----GASRIIAIDING  230 (376)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCSEEEEECSCG
T ss_pred             CEEEEECCCHHHHHHHHHHHHc----CCCeEEEEcCCH
Confidence            4799999999999998888775    88 799998765

>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*

Probab=81.21  E-value=1.9  Score=42.32  Aligned_cols=36  Identities=19%  Similarity=0.326  Sum_probs=31.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      +...|+|+|+|..|...+..+++.    |++|.+++..+.
T Consensus        10 ~~~~ili~g~g~~~~~~~~a~~~~----G~~v~~~~~~~~   45 (391)
T 1kjq_A           10 AATRVMLLGSGELGKEVAIECQRL----GVEVIAVDRYAD   45 (391)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHTT----TCEEEEEESSTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc----CCEEEEEECCCC
Confidence            446899999999999999999996    999999987653

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=81.15  E-value=1.1  Score=44.68  Aligned_cols=35  Identities=31%  Similarity=0.316  Sum_probs=31.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ....|+|||.|..|..+|..|+..    |.+|+++|+++
T Consensus       246 ~GKTVgVIG~G~IGr~vA~~lraf----Ga~Viv~d~dp  280 (464)
T 3n58_A          246 AGKVAVVCGYGDVGKGSAQSLAGA----GARVKVTEVDP  280 (464)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSH
T ss_pred             cCCEEEEECcCHHHHHHHHHHHHC----CCEEEEEeCCc
Confidence            345799999999999999999986    99999999866

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=81.14  E-value=1.6  Score=40.74  Aligned_cols=35  Identities=11%  Similarity=0.098  Sum_probs=30.4

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~   92 (515)
                      ....|+|+|+|-+|.++|..|++.    |. +|+|+.|..
T Consensus       119 ~~k~~lvlGaGg~~~aia~~L~~~----G~~~v~i~~R~~  154 (272)
T 3pwz_A          119 RNRRVLLLGAGGAVRGALLPFLQA----GPSELVIANRDM  154 (272)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHT----CCSEEEEECSCH
T ss_pred             cCCEEEEECccHHHHHHHHHHHHc----CCCEEEEEeCCH
Confidence            345799999999999999999996    85 899998865

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=80.98  E-value=1.1  Score=42.81  Aligned_cols=32  Identities=31%  Similarity=0.507  Sum_probs=28.2

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~   92 (515)
                      +|+|||+|-.|.++|+.|+..    |+ .+.++|...
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~----~l~el~L~Di~~   33 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMR----GYDDLLLIARTP   33 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHH----TCSCEEEECSST
T ss_pred             CEEEECcCHHHHHHHHHHHhC----CCCEEEEEcCCh
Confidence            489999999999999999885    66 599999875

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=80.97  E-value=1.3  Score=41.12  Aligned_cols=32  Identities=31%  Similarity=0.443  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      +|+|||+|-.|.+.|..|.+.    |.+|++++|..
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~----g~~v~v~~r~~  149 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREA----GLEVWVWNRTP  149 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT----TCCEEEECSSH
T ss_pred             eEEEECCcHHHHHHHHHHHHC----CCEEEEEECCH
Confidence            899999999999999999986    78999998875

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=80.84  E-value=0.84  Score=42.99  Aligned_cols=32  Identities=19%  Similarity=0.321  Sum_probs=29.0

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ++|.|||+|-.|...|..|++.    |++|++++ ++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~----g~~V~~~~-~~   35 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARA----GHQLHVTT-IG   35 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHT----TCEEEECC-SS
T ss_pred             CEEEEEccCHHHHHHHHHHHhC----CCEEEEEc-CH
Confidence            4799999999999999999986    89999998 54

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=80.81  E-value=1  Score=44.70  Aligned_cols=34  Identities=29%  Similarity=0.382  Sum_probs=30.0

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~   92 (515)
                      ...|+|||+|..|..+|..|+..    |. +|+++++..
T Consensus       167 g~~VlIiGaG~iG~~~a~~l~~~----G~~~V~v~~r~~  201 (404)
T 1gpj_A          167 DKTVLVVGAGEMGKTVAKSLVDR----GVRAVLVANRTY  201 (404)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHH----CCSEEEEECSSH
T ss_pred             CCEEEEEChHHHHHHHHHHHHHC----CCCEEEEEeCCH
Confidence            45799999999999999999986    87 899998765

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=80.80  E-value=1.4  Score=41.41  Aligned_cols=35  Identities=20%  Similarity=0.272  Sum_probs=30.8

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~   92 (515)
                      ....|+|+|+|-+|-+++..|++.    |. +|+|+.|..
T Consensus       121 ~~k~vlvlGaGGaaraia~~L~~~----G~~~v~v~nRt~  156 (282)
T 3fbt_A          121 KNNICVVLGSGGAARAVLQYLKDN----FAKDIYVVTRNP  156 (282)
T ss_dssp             TTSEEEEECSSTTHHHHHHHHHHT----TCSEEEEEESCH
T ss_pred             cCCEEEEECCcHHHHHHHHHHHHc----CCCEEEEEeCCH
Confidence            346899999999999999999996    87 899998875

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=80.78  E-value=1.3  Score=41.63  Aligned_cols=35  Identities=17%  Similarity=0.314  Sum_probs=29.7

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      .+|.|||+|-.|.++|..|++.+  .|++|.++++++
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g--~~~~V~~~d~~~   41 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDH--PHYKIVGYNRSD   41 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHC--TTSEEEEECSSH
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCC--CCcEEEEEcCCH
Confidence            57999999999999999998852  167999998765

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=80.64  E-value=1.2  Score=47.74  Aligned_cols=34  Identities=29%  Similarity=0.387  Sum_probs=31.1

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      .+|.|||+|.-|...|..|++.    |++|+++|+++.
T Consensus       315 ~kV~VIGaG~MG~~iA~~la~a----G~~V~l~D~~~~  348 (715)
T 1wdk_A          315 KQAAVLGAGIMGGGIAYQSASK----GTPILMKDINEH  348 (715)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHT----TCCEEEECSSHH
T ss_pred             CEEEEECCChhhHHHHHHHHhC----CCEEEEEECCHH
Confidence            4699999999999999999996    999999998863

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=80.40  E-value=1.8  Score=41.81  Aligned_cols=35  Identities=14%  Similarity=0.277  Sum_probs=31.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ....|.|||.|-.|..+|..|+..    |++|.++++..
T Consensus       149 ~g~~vgIIG~G~iG~~iA~~l~~~----G~~V~~~d~~~  183 (334)
T 2dbq_A          149 YGKTIGIIGLGRIGQAIAKRAKGF----NMRILYYSRTR  183 (334)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSC
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhC----CCEEEEECCCc
Confidence            345799999999999999999986    89999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	515
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	2e-28
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	4e-11
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	6e-10
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	1e-07
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	9e-07
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	2e-06
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	3e-06
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	7e-06
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	1e-05
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	2e-05
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	4e-05
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	5e-05
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	6e-05
d1jnra2	356	c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct	6e-05
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	7e-05
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	1e-04
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	1e-04
d1chua2	305	c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E	2e-04
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	2e-04
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	3e-04
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	3e-04
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	3e-04
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	5e-04
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	5e-04
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	5e-04
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	5e-04
d1hyha1	146	c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydro	6e-04
d1guza1	142	c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium	6e-04
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	8e-04
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	8e-04
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	0.001
d1ldna1	148	c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus	0.001
d3coxa1	370	c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of	0.001
d1feca1	240	c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas	0.002
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	0.003
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	0.003
d2bs2a2	336	c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo	0.003
d1kf6a2	311	c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es	0.003
d1y6ja1	142	c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridi	0.003
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	0.004
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	0.004

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score =  113 bits (283), Expect = 2e-28
 Identities = 64/454 (14%), Positives = 105/454 (23%), Gaps = 104/454 (22%)

Query: 51  NNDDQYDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPALGKSNFIKKEDPPDPR 109
            ++   DV +VG G  G+  A  L+     K  L V IID                 + +
Sbjct: 3   YSESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK----------VYNGQ 52

Query: 110 VSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVE 169
              +   T+   K +G    +    +     + +++    G+ +   R  +         
Sbjct: 53  ADGLQCRTLESLKNLGLADKILSEANDM-STIALYNPDENGHIRRTDRIPDTLPGISRYH 111

Query: 170 NKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL 229
             VLH   +         +           L                             
Sbjct: 112 QVVLHQGRIERRILDSIAEISDTRIKVERPL----------------------------- 142

Query: 230 SDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAG 289
                +        D     V     + +   S        T   N       Q      
Sbjct: 143 -IPEKMEIDSSKAEDPEAYPVTMTLRYMSEDESTPLQFGHKTE--NGLFRSNLQTQEEED 199

Query: 290 PIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDM 349
               LP G     I                             Y  G             
Sbjct: 200 ANYRLPEGKEAGEIET-----------------------VHCKYVIGCDGGHSWVRRTLG 236

Query: 350 FSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPL 409
           F     +                                     +RV + GDA HT  P 
Sbjct: 237 FEMIVTEKF--------------------------------SKDERVFIAGDACHTHSPK 264

Query: 410 AGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAY 469
           AGQG+N    D   L   +     V     +  +LK YE ER+P    ++     F + +
Sbjct: 265 AGQGMNTSMMDTYNLGWKLG---LVLTGRAKRDILKTYEEERQPFAQALIDFDHQFSRLF 321

Query: 470 SVDFGPLNILRAAAFHGAQYISPLKRNIISYASG 503
           S      ++          +     +    +ASG
Sbjct: 322 SGR-PAKDVADEMGVSMDVFKEAFVKG-NEFASG 353

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 61.9 bits (149), Expect = 4e-11
 Identities = 20/220 (9%), Positives = 51/220 (23%), Gaps = 32/220 (14%)

Query: 55  QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVT 114
           +  VA++G G  G+ L   L        +   I++                   R   + 
Sbjct: 2   KTQVAIIGAGPSGLLLGQLLHK----AGIDNVILERQTPDYV--------LGRIRAGVLE 49

Query: 115 PATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLH 174
              +   +E G  + + +    +      +        + + + ++      V     + 
Sbjct: 50  QGMVDLLREAGVDRRMARDGLVHEGVEIAFAG---QRRRIDLKRLSGGKTVTVYGQTEVT 106

Query: 175 SSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTS 234
             L+   +          + +    L      ++ +                        
Sbjct: 107 RDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLR----------------- 149

Query: 235 LYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEH 274
           L    + G DG     R+    +         A       
Sbjct: 150 LDCDYIAGCDGFHGISRQSIPAERMQHGRLFLAGDAAHIV 189

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 58.2 bits (139), Expect = 6e-10
 Identities = 33/243 (13%), Positives = 68/243 (27%), Gaps = 31/243 (12%)

Query: 57  DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPA 116
           D+ + G G+ G++ A +L    +     V +++S+  +           P      + PA
Sbjct: 3   DILIAGAGIGGLSCALALHQAGIG---KVTLLESSSEIR----------PLGVGINIQPA 49

Query: 117 TISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSS 176
            +    E+G    +        +   +       +++    +         +    L   
Sbjct: 50  AVEALAELGLGPALAATAIPTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMI 109

Query: 177 LLSCMQNTEFQKTI-YPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSL 235
           LL+ ++    Q+ +     +  +           +           GH          +L
Sbjct: 110 LLAAVRERLGQQAVRTGLGVERIE----------ERDGRVLIGARDGH------GKPQAL 153

Query: 236 YAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLP 295
            A ++VGADG  S VR                             A   +      A   
Sbjct: 154 GADVLVGADGIHSAVRAHLHPDQRPLRDPLPHWGRG-RITLLGDAAHLMYPMGANGASQA 212

Query: 296 IGD 298
           I D
Sbjct: 213 ILD 215

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 50.9 bits (120), Expect = 1e-07
 Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 6/100 (6%)

Query: 387 HANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKK 446
              ++   R+ L+GDAAH ++P+   G +    D   L+  +A      AD+  A  L++
Sbjct: 182 PLPHWGRGRITLLGDAAHLMYPMGANGASQAILDGIELAAALAR----NADVAAA--LRE 235

Query: 447 YEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHG 486
           YE  R+P    ++      +K            ++AA   
Sbjct: 236 YEEARRPTANKIILANREREKEEWAAASRPKTEKSAALEA 275

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 48.1 bits (113), Expect = 9e-07
 Identities = 34/235 (14%), Positives = 66/235 (28%), Gaps = 29/235 (12%)

Query: 55  QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVT 114
            YDV V+GGG  G+  A   A     +  +V ++D    LG+   I      +       
Sbjct: 2   HYDVIVIGGGPSGLMAAIGAAE----EGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPL 57

Query: 115 PATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLH 174
              +      G + Y         D +  ++  G+   + +   +               
Sbjct: 58  DEIVKHIPGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFP--------VSNKA 109

Query: 175 SSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTS 234
            S++  +        +     T +  +                 +  G    + L  G  
Sbjct: 110 QSVVDALLTRLKDLGVKIRTNTPVETI----------------EYENGQTKAVILQTGEV 153

Query: 235 LYAKLVVGADGGKSRVRELA-GFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPA 288
           L    VV A GGKS  +  + G        + + I               + + +
Sbjct: 154 LETNHVVIAVGGKSVPQTGSTGDGYAWAEKAGHTITELFGGGVSVKEINPKEMSS 208

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.1 bits (110), Expect = 2e-06
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 4/43 (9%)

Query: 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95
          D++YDV V+G G+    L+  ++         V  +D NP  G
Sbjct: 4  DEEYDVIVLGTGLTECILSGIMSV----NGKKVLHMDRNPYYG 42

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.7 bits (109), Expect = 3e-06
 Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 6/96 (6%)

Query: 53  DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG--KSNFIKKEDPPDPRV 110
           D  YDV V+G G+    L+  L+         V  ID     G   ++    +     + 
Sbjct: 3   DTDYDVIVLGTGITECILSGLLSV----DGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQ 58

Query: 111 STVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDY 146
           + ++               V           ++ + 
Sbjct: 59  NPISKEERESKFGKDRDWNVDLIPKFLMANGELTNI 94

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 45.6 bits (107), Expect = 7e-06
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 10/64 (15%)

Query: 39 PSSESEVKQSFTNN-------DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN 91
          P  ES V +  T           + DV VVG G  G++ A  ++  P   ++ VAII+ +
Sbjct: 10 PIKESIVSREMTRRYMTDMITYAETDVVVVGAGSAGLSAAYEISKNP---NVQVAIIEQS 66

Query: 92 PALG 95
           + G
Sbjct: 67 VSPG 70

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 16/108 (14%), Positives = 33/108 (30%), Gaps = 13/108 (12%)

Query: 57  DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPA 116
            +AVVGG + G+  A  L        + V + + +P                    V P 
Sbjct: 6   RIAVVGGSISGLTAALMLRD----AGVDVDVYERSPQPL---------SGFGTGIVVQPE 52

Query: 117 TISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEIL 164
            + +  E G          +  + +       +G    + R  + + +
Sbjct: 53  LVHYLLEQGVELDSISVPSSSMEYVDALTGERVGSVPADWRFTSYDSI 100

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 44.6 bits (104), Expect = 2e-05
 Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 5/95 (5%)

Query: 53  DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVST 112
            D  DV VVG G  G + A S           V +I+  P +G +  +            
Sbjct: 14  HDTVDVVVVGSGGAGFSAAISATD----SGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQ 69

Query: 113 VTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYT 147
                I+   E+  ++   +      D   V   +
Sbjct: 70  QKAKKITDSPELM-FEDTMKGGQNINDPALVKVLS 103

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 43.2 bits (100), Expect = 4e-05
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 4/38 (10%)

Query: 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP 92
           Y+  V+GGG++G A+A  LA     ++ + A+ +S  
Sbjct: 4  HYEAVVIGGGIIGSAIAYYLAK----ENKNTALFESGT 37

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 42.6 bits (99), Expect = 5e-05
 Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 6/95 (6%)

Query: 54  DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTV 113
              +  ++G G  G+  A  LA        SV + D+   +G+   +      +     V
Sbjct: 3   QYSENIIIGAGAAGLFCAAQLAK----LGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEV 58

Query: 114 TPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTG 148
           TPA   +  +   +      R+  +D + +    G
Sbjct: 59  TPAH--YLSQNPHFVKSALARYTNWDFISLVAEQG 91

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 42.8 bits (99), Expect = 6e-05
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 4/42 (9%)

Query: 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS 97
          +DV VVG G +GMA    LA     + +   ++D+      +
Sbjct: 4  FDVIVVGAGSMGMAAGYQLAK----QGVKTLLVDAFDPPHTN 41

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 42.7 bits (99), Expect = 6e-05
 Identities = 9/44 (20%), Positives = 16/44 (36%)

Query: 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSN 98
          + D+ ++GGG  G   A   A       L V +++         
Sbjct: 21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGA 64

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 41.7 bits (97), Expect = 7e-05
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 4/42 (9%)

Query: 54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95
          D+ DV ++GGG  G   A   A +          I+   ALG
Sbjct: 2  DENDVVIIGGGPGGYVAAIKAAQL----GFKTTCIEKRGALG 39

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 41.5 bits (96), Expect = 1e-04
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)

Query: 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95
          D +YDV V+GGG  G + A + A       L VAI++    LG
Sbjct: 4  DAEYDVVVLGGGPGGYSAAFAAADE----GLKVAIVERYKTLG 42

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (97), Expect = 1e-04
 Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 11/98 (11%)

Query: 22  SFCSSVAEKASSSNSGQ--PSSESEVKQSFT-------NNDDQYDVAVVGGGMVGMALAC 72
           + C S   K    +  +  P  ES V ++ T       +     DV +VG G  G++ A 
Sbjct: 8   THCLSDIVKKEDWSDFKFAPIRESTVSRAMTSRYFKDLDKFAVSDVIIVGAGSSGLSAAY 67

Query: 73  SLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRV 110
            +A       L V II+S+ A G  +++  +      +
Sbjct: 68  VIAKNRPD--LKVCIIESSVAPGGGSWLGGQLFSAMVM 103

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 18/99 (18%), Positives = 27/99 (27%), Gaps = 14/99 (14%)

Query: 53  DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNF---------IKKE 103
           +   DV ++G G  G++LA  LA         V ++   P    S F           + 
Sbjct: 5   EHSCDVLIIGSGAAGLSLALRLA-----DQHQVIVLSKGPVTEGSTFYAQGGIAAVFDET 59

Query: 104 DPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQ 142
           D  D  V     A                 R      + 
Sbjct: 60  DSIDSHVEDTLIAGAGICDRHAVEFVASNARSCVQWLID 98

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 4/43 (9%)

Query: 53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95
          +  +DV ++GGG  G   A   A +      + A ++    LG
Sbjct: 3  NKSHDVVIIGGGPAGYVAAIKAAQL----GFNTACVEKRGKLG 41

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 14/95 (14%), Positives = 26/95 (27%), Gaps = 10/95 (10%)

Query: 56  YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG------KSNFIKKEDPPDPR 109
           YD  +VG G+ G   A  L       +  V +I+    +G          I+        
Sbjct: 2   YDYIIVGSGLFGAVCANELKK----LNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHI 57

Query: 110 VSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 144
             T       +  ++  +        A +      
Sbjct: 58  FHTNDKYIWDYVNDLVEFNRFTNSPLAIYKDKLFN 92

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 40.7 bits (94), Expect = 3e-04
 Identities = 29/222 (13%), Positives = 58/222 (26%), Gaps = 22/222 (9%)

Query: 53  DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVST 112
            +  DV ++G G  G+A A S           V +++  P  G +  +            
Sbjct: 21  KETTDVVIIGSGGAGLAAAVSARD----AGAKVILLEKEPIPGGNTKLAAGGMNAAE--- 73

Query: 113 VTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKV 172
            T        E      +        +         L     ++ D    +   + +   
Sbjct: 74  -TKPQAKLGIEDKKQIMIDDTMKGGRNINDPELVKVLANNSSDSIDWLTSMGADMTDVGR 132

Query: 173 LHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISV------DSTPSATTLFTKGHLAK 226
           +  + ++          +       +          +             +    G L K
Sbjct: 133 MGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVK 192

Query: 227 LDLSDGTSLYAKLVVGADGGKSRVREL--------AGFKTTG 260
            + +    + A  VV A GG ++  E          GFK T 
Sbjct: 193 GEYTGYYVIKADAVVIAAGGFAKNNERVSKYDPKLKGFKATN 234

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 3e-04
 Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 12/109 (11%)

Query: 57  DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG---KSNFIKKEDPPDP---RV 110
           DV VVGGG+ GMA A  L        L+V ++++   +G    +   +K    D     V
Sbjct: 1   DVVVVGGGISGMAAAKLLHD----SGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYV 56

Query: 111 STVTPATISFFKEIGA--WQYVQQHRHAYFDKMQVWDYTGLGYTKYNAR 157
                  +   KE+G   ++  +  R  +  K + + + G     +N  
Sbjct: 57  GPTQNRILRLAKELGLETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPI 105

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 40.1 bits (92), Expect = 5e-04
 Identities = 22/132 (16%), Positives = 42/132 (31%), Gaps = 9/132 (6%)

Query: 57  DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG--KSNFIKKEDPPDPRVSTVT 114
           +VAVVGGG+ G+A+A  L S    +     +++S+  LG             +   ++  
Sbjct: 2   NVAVVGGGISGLAVAHHLRS----RGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFL 57

Query: 115 ---PATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENK 171
              PAT +    +     ++    A   +                  +  +IL      +
Sbjct: 58  DREPATRALAAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLASDILPLGARLR 117

Query: 172 VLHSSLLSCMQN 183
           V           
Sbjct: 118 VAGELFSRRAPE 129

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 40.0 bits (92), Expect = 5e-04
 Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 4/47 (8%)

Query: 51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS 97
             +   V VVG G  G   + +          +V ++D  P  G +
Sbjct: 15 GPSETTQVLVVGAGSAGFNASLAAKK----AGANVILVDKAPFSGGN 57

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 39.8 bits (92), Expect = 5e-04
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 54 DQYDVAVVGGGMVGMALACSLASMPLTKH--LSVAIIDSNPALG 95
          ++ DV +VG G  G++ A  L  +       L V +++    +G
Sbjct: 31 EEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIG 74

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 39.9 bits (91), Expect = 5e-04
 Identities = 48/378 (12%), Positives = 97/378 (25%), Gaps = 35/378 (9%)

Query: 57  DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPA 116
            V VVG GM G++ A  L+   +T    + I+++   +G             R+     A
Sbjct: 2   RVIVVGAGMSGISAAKRLSEAGITD---LLILEATDHIG------------GRMHKTNFA 46

Query: 117 TISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSS 176
            I+   E+GA  +V+       + +     + L    + +            +  V    
Sbjct: 47  GINV--ELGA-NWVEGVNGGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDED 103

Query: 177 LLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLY 236
            +               +L++         +S+ +          G    +D+      +
Sbjct: 104 YVQKRIELADSVEEMGEKLSATLHASGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKF 163

Query: 237 AKLVVGADGGKSRVRELAGFKTTGWS-YSQNAIICTVEHNKENYCAWQRFLPAGPIALLP 295
                      S    +     + +                  Y A Q          + 
Sbjct: 164 DYEFAEPPRVTSLQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIV 223

Query: 296 IGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRG 355
                 N V               ED+      ++ DY        +    +  F     
Sbjct: 224 DPRLQLNKVVREIKYSPGGVTVKTEDNS----VYSADYVMVSASLGVLQSDLIQFKPKLP 279

Query: 356 DATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQG-V 414
              + A   F  P  V +   +++  P+           RV   G+     +     G  
Sbjct: 280 TWKVRAIYQFW-PVGVNRYEYDQLRAPV----------GRVYFTGEHTSEHYNGYVHGAY 328

Query: 415 NLGFGDASTLSRIIAEGI 432
             G   A  L     + +
Sbjct: 329 LSGIDSAEILINCAQKKM 346

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

 Score = 38.2 bits (88), Expect = 6e-04
 Identities = 7/62 (11%), Positives = 17/62 (27%)

Query: 58  VAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPAT 117
           + ++G G VG A+A  L +  +         +           +           +    
Sbjct: 4   IGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVIND 63

Query: 118 IS 119
            +
Sbjct: 64  WA 65

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

 Score = 38.1 bits (88), Expect = 6e-04
 Identities = 15/60 (25%), Positives = 25/60 (41%)

Query: 58  VAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPAT 117
           + V+G G VG   A  LA   L + L +  +      GK+  + +  P     + VT + 
Sbjct: 3   ITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSN 62

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 39.4 bits (90), Expect = 8e-04
 Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA 93
            + ++G G+VG  LA  L +       ++ ++D  P 
Sbjct: 2  PRIVIIGAGIVGTNLADELVTRGWN---NITVLDQGPL 36

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 39.0 bits (90), Expect = 8e-04
 Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 8/105 (7%)

Query: 54  DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTV 113
           ++ DV VVG G  G+     L         SV +I++   +G   +  +     P     
Sbjct: 6   EEVDVLVVGAGFSGLYALYRL----RELGRSVHVIETAGDVGGVWYWNRY----PGARCD 57

Query: 114 TPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARD 158
             +    +               Y  + ++  Y      K++ R 
Sbjct: 58  IESIEYCYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRS 102

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 38.3 bits (88), Expect = 0.001
 Identities = 13/92 (14%), Positives = 27/92 (29%), Gaps = 9/92 (9%)

Query: 55  QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVT 114
           + +  VVG G  G   A   A +       V I++     G    +          ++  
Sbjct: 3   ETETLVVGAGPGGYVAAIRAAQL----GQKVTIVEKGNLGGVCLNVGCIPSKALISASHR 58

Query: 115 PATISFFKEIGAWQYVQQHRHAYFDKMQVWDY 146
                  +E        +  +   D  +V ++
Sbjct: 59  YEQAKHSEE-----MGIKAENVTIDFAKVQEW 85

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 148

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 10/66 (15%), Positives = 25/66 (37%)

Query: 58  VAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPAT 117
           V V+G G VG +   +L +  +   + +   + + A+G +          P+   +    
Sbjct: 9   VVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGD 68

Query: 118 ISFFKE 123
               ++
Sbjct: 69  YDDCRD 74

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

 Score = 38.7 bits (89), Expect = 0.001
 Identities = 15/137 (10%), Positives = 32/137 (23%), Gaps = 16/137 (11%)

Query: 52  NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVS 111
           + D+    V+G G  G   A  L        +   I++                  P   
Sbjct: 4   DGDRVPALVIGSGYGGAVAALRLTQ----AGIPTQIVEMGR-----------SWDTPGSD 48

Query: 112 TVTPATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENK 171
                 +    +   W   +  +          + +   Y      +    I        
Sbjct: 49  GKIFCGMLNPDKRSMWLADKTDQPVSNFMGFGINKSIDRYVGVLDSERFSGIK-VYQGRG 107

Query: 172 VLHSSLLSCMQNTEFQK 188
           V   SL++       ++
Sbjct: 108 VGGGSLVNGGMAVTPKR 124

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 13/92 (14%), Positives = 29/92 (31%), Gaps = 3/92 (3%)

Query: 55  QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVT 114
            YD+ V+G G  G+    + AS+   +   VA+ID     G  ++               
Sbjct: 3   AYDLVVIGAGSGGLEAGWNAASLHKKR---VAVIDLQKHHGPPHYAALGGTCVNVGCVPK 59

Query: 115 PATISFFKEIGAWQYVQQHRHAYFDKMQVWDY 146
              ++    +   +           +    ++
Sbjct: 60  KLMVTGANYMDTIRESAGFGWELDRESVRPNW 91

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 37.2 bits (85), Expect = 0.003
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 4/46 (8%)

Query: 50 TNNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95
           N+  +YD   +GGG  G   +  L +M         I+D  P LG
Sbjct: 37 ENDPREYDAIFIGGGAAGRFGSAYLRAM----GGRQLIVDRWPFLG 78

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 12/90 (13%), Positives = 21/90 (23%), Gaps = 4/90 (4%)

Query: 55  QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVT 114
           Q  + ++GGG  G   A     +     +   +++     G    I              
Sbjct: 5   QTTLLIIGGGPGGYVAAIRAGQL----GIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQ 60

Query: 115 PATISFFKEIGAWQYVQQHRHAYFDKMQVW 144
               S F E                +   W
Sbjct: 61  FHQASRFTEPSPLGISVASPRLDIGQSVAW 90

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 4/41 (9%)

Query: 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95
            D  V+GGG+ G+  A +       K LS  ++   P   
Sbjct: 5  YCDSLVIGGGLAGLRAAVATQQ----KGLSTIVLSLIPVKR 41

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95
          Q D+A+VG G  G+  A + A      +  +A+I     + 
Sbjct: 5  QADLAIVGAGGAGLRAAIAAAQ--ANPNAKIALISKVYPMR 43

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

 Score = 35.8 bits (82), Expect = 0.003
 Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 2/40 (5%)

Query: 58 VAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS 97
          VA++G G VG + A ++A       L   +ID        
Sbjct: 4  VAIIGAGFVGASAAFTMALRQTANEL--VLIDVFKEKAIG 41

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 36.8 bits (84), Expect = 0.004
 Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 4/41 (9%)

Query: 55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG 95
           YD   +GGG  G+A     A          A+I++    G
Sbjct: 2  HYDYIAIGGGSGGIASINRAAMY----GQKCALIEAKELGG 38

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 37.4 bits (85), Expect = 0.004
 Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 18/103 (17%)

Query: 45  VKQSFTNNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKED 104
            +       +   V +VG GM G++ A  LA         V +++++   G         
Sbjct: 20  ARNGLKATSNPKHVVIVGAGMAGLSAAYVLAG----AGHQVTVLEASERPG--------- 66

Query: 105 PPDPRVSTVTPATISFFKEIGAWQYVQQHRH--AYFDKMQVWD 145
               RV T       ++  +G  +  ++HR    Y  K  +  
Sbjct: 67  ---GRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKFDLRL 106

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	515
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	99.97
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	99.97
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	99.95
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	99.9
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	99.87
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.62
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.55
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.52
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.51
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.38
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.37
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.37
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.32
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.29
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.25
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.24
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.23
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.22
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.15
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.14
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.14
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	99.07
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.03
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.02
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.97
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.96
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.96
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.95
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.94
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.93
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.93
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	98.92
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.91
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.87
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.87
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.85
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.84
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.82
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.8
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.8
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.78
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.76
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.72
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.7
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.7
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.7
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.7
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.65
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.64
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.62
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.59
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.57
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.57
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.5
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.49
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.47
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	98.39
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.38
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.37
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.35
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.35
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.33
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.32
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.28
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	98.26
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.24
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	98.22
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.21
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.2
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.2
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.19
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.17
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.16
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.14
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.11
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.1
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	98.06
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.03
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.01
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	97.97
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.91
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	97.85
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	97.77
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	97.73
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	97.72
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	97.7
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	97.67
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.67
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	97.59
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	97.23
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.55
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.5
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	96.5
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.26
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.24
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.17
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	96.0
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.0
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	95.99
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	95.98
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	95.41
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	95.38
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	95.19
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	95.18
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	94.87
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	94.85
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	94.64
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	94.43
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	94.35
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	94.13
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	94.08
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	94.02
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	93.69
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	93.56
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	93.51
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	93.49
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	93.41
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	93.19
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	93.02
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	92.89
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	92.79
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	92.59
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	92.41
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	92.32
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	92.28
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	92.08
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	91.98
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	91.72
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	91.64
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	91.56
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	91.43
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	91.3
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	91.18
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	91.13
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	91.02
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	90.91
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	90.9
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	90.72
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	90.23
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	90.21
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	90.15
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	90.06
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	89.81
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	89.79
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	89.7
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	89.32
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	89.16
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	89.14
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	89.09
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	88.7
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	88.7
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	88.65
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	87.7
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	87.7
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	87.65
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	87.47
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	86.95
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	86.22
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	85.99
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	85.35
d2voua2	128	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	85.25
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	84.96
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	84.8
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	84.16
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	83.79
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	83.66
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	83.47
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	83.1
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	82.74
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	82.63
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	82.45
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	82.27
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	81.71
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	81.32
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	81.06
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	80.69
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	80.63
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	80.41

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=99.97  E-value=2.6e-31  Score=264.28  Aligned_cols=336  Identities=17%  Similarity=0.168  Sum_probs=202.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHh-----cCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCch
Q 010200           54 DQYDVAVVGGGMVGMALACSLA-----SMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQ  128 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~-----~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~  128 (515)
                      ..|||+||||||+||++|+.|+     +.    |++|+||||.+.+.          ..++++.++++++++|+++|+++
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~----G~~v~vlEr~~~~~----------~~~r~~~l~~~~~~~L~~lGl~~   71 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKP----DLKVRIIDKRSTKV----------YNGQADGLQCRTLESLKNLGLAD   71 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHST----TCCEEEECSSSSCC----------CSCSCCEECHHHHHHHHTTTCHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccC----CCcEEEEcCCCCCC----------cCCeEEEECHHHHHHHHHcCChH
Confidence            4599999999999999999996     43    99999999998874          34558999999999999999999


Q ss_pred             hhhhhhccccceEEEEeCCCccceeeecc-----cCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCC
Q 010200          129 YVQQHRHAYFDKMQVWDYTGLGYTKYNAR-----DVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPS  203 (515)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~  203 (515)
                      ++.+... ....+.++.............     ..........+.+..+...|.+.+.+.+.........+        
T Consensus        72 ~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--------  142 (360)
T d1pn0a1          72 KILSEAN-DMSTIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEISDTRIKVERPL--------  142 (360)
T ss_dssp             HHHTTCB-CCCEEEEEEECTTSCEEEEEEEESSCTTSCSSCCEECCHHHHHHHHHHHHHHHHTTSSCEECSE--------
T ss_pred             HHHhhcC-CcceeEEEecccCCcccccccccccccccccchheeecHHHHHHHHHHHHHhccccceeeeEec--------
Confidence            9998777 566666665433322221111     11122334678889999989888766542221111111        


Q ss_pred             CCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCCceEEE
Q 010200          204 SSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQ  283 (515)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (515)
                                                 .+..+.+|.+++|||.+|.+|.............                   
T Consensus       143 ---------------------------~~~~~~~d~~~~~dg~~s~v~~~~~~~~~~~~~~-------------------  176 (360)
T d1pn0a1         143 ---------------------------IPEKMEIDSSKAEDPEAYPVTMTLRYMSEDESTP-------------------  176 (360)
T ss_dssp             ---------------------------EEEEEEECGGGTTCTTCCCEEEEEEECCGGGSCC-------------------
T ss_pred             ---------------------------ccceEEeeEEEEeecCCcceEEEEEEeecccccc-------------------
Confidence                                       1235789999999999999986542111100000                   


Q ss_pred             EecCCCcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCC-CCCCCCCCCcccchhccccCcccccc
Q 010200          284 RFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYG-PHPKSISSGSVDMFSWFRGDATLSAK  362 (515)
Q Consensus       284 ~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (515)
                            .....+..++.....+                ........    .|. +.................+....   
T Consensus       177 ------~~~~~~~~~~~~~~~~----------------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~---  227 (360)
T d1pn0a1         177 ------LQFGHKTENGLFRSNL----------------QTQEEEDA----NYRLPEGKEAGEIETVHCKYVIGCDGG---  227 (360)
T ss_dssp             ------CTTCCCCCSSSCCCHH----------------HHHHHHHT----SCCCSTTCCTTCEEEEEEEEEEECCCT---
T ss_pred             ------eeeeeecCCCceEEee----------------ecCCcccc----eeecCcccchhhHHHHHHHhhcCcccc---
Confidence                  0000011111110000                00000000    111 11000000000000010010000   


Q ss_pred             ccccCCcceEEeccceeeeccccccccccc-cCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchH
Q 010200          363 ECFEVPPRVVKLASERMVFPLSLKHANNYV-SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEA  441 (515)
Q Consensus       363 ~~~~i~~~~~~~~~~~~~~p~~~~~~~~~~-~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~  441 (515)
                                 .......++.......+|. .++|+|||||||.|+|+.|||+|+||+||..|++.|....+..   ...
T Consensus       228 -----------~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~l~~~~~~~---~~~  293 (360)
T d1pn0a1         228 -----------HSWVRRTLGFEMIVTEKFSKDERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKLGLVLTGR---AKR  293 (360)
T ss_dssp             -----------TCHHHHHHTCCCEECSCSEETTTEEECGGGTEECCSTTCCHHHHHHHHHHHHHHHHHHHHTTC---BCG
T ss_pred             -----------cchhhcccccccchhhheeecCcEEEccCcccccccccCCCCcccHHHHHHHHHHHHHHhcCC---ChH
Confidence                       0000011233333456665 5899999999999999999999999999999999999887643   236


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcccChhHHHHHHHH---hhcCCC
Q 010200          442 SLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISY---ASGEQR  506 (515)
Q Consensus       442 ~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~---~~g~~~  506 (515)
                      .+|+.|+++|+++...++..++.+.++|+..... .    .........+.+++.+++.   .+|.+.
T Consensus       294 ~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~f~~~~~~~~G~~~  356 (360)
T d1pn0a1         294 DILKTYEEERQPFAQALIDFDHQFSRLFSGRPAK-D----VADEMGVSMDVFKEAFVKGNEFASGTAI  356 (360)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHHHHHHHHHSCBCS-S----TTCTTSBCHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchH-H----HHHhcccchHHHHHHHHHhhhhheeeCc
Confidence            7899999999999999999999999999765322 1    1222233344455555444   577654

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.97  E-value=7.4e-30  Score=245.23  Aligned_cols=269  Identities=20%  Similarity=0.241  Sum_probs=191.6

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      ++||+|||||||||++|+.|+++    |+ +|+|+||.+.+.          ..++++.+.++++++|+++++++.+.+.
T Consensus         1 ~~~V~IvGaG~aGl~~A~~L~~~----Gi~~V~V~Er~~~~~----------~~g~~i~l~~~~~~~l~~~~~~~~~~~~   66 (288)
T d3c96a1           1 PIDILIAGAGIGGLSCALALHQA----GIGKVTLLESSSEIR----------PLGVGINIQPAAVEALAELGLGPALAAT   66 (288)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT----TCSEEEEEESSSSCC----------CCSCEEEECHHHHHHHHHTTCHHHHHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhC----CCCeEEEEeCCCCCC----------CCceEEEECHHHHHHHHHcCchhhhHhh
Confidence            47999999999999999999997    86 999999998773          3456999999999999999999999887


Q ss_pred             hccccceEEEEeCCCccceeeecccCC-CCcceEEechHHHHHHHHHHHhc-CCCceEEcCCeeEEEEeCCCCCCcccCC
Q 010200          134 RHAYFDKMQVWDYTGLGYTKYNARDVN-KEILGCVVENKVLHSSLLSCMQN-TEFQKTIYPSRLTSMALLPSSSSISVDS  211 (515)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~r~~l~~~L~~~~~~-~g~v~i~~~~~v~~i~~~~~~~~~~~~~  211 (515)
                      .. .......++..+.....+...... .....+...+......+.+...+ ...+.+.++++++.++.           
T Consensus        67 ~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----------  134 (288)
T d3c96a1          67 AI-PTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-----------  134 (288)
T ss_dssp             SE-EECEEEEECTTSCEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-----------
T ss_pred             hc-ccccceeEcCCCCEEEeccccccccccCcccccchhhhHHHHHHHHHHhccCeeeecCcEEEEeee-----------
Confidence            66 445555666555444433332222 22333445555555555444322 23488999999999876           


Q ss_pred             CCCcccccccCCeeEEEcCCC----cEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCCceEEEEecC
Q 010200          212 TPSATTLFTKGHLAKLDLSDG----TSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLP  287 (515)
Q Consensus       212 ~~~~~~~~~~~~~~~v~~~~g----~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (515)
                               ..+.+++.+.+|    +++.+|+||+|||.+|.+|+.+........+                        
T Consensus       135 ---------~~~~v~v~~~~g~~~~~~~~ad~vi~ADG~~S~vr~~~~~~~~~~~~------------------------  181 (288)
T d3c96a1         135 ---------RDGRVLIGARDGHGKPQALGADVLVGADGIHSAVRAHLHPDQRPLRD------------------------  181 (288)
T ss_dssp             ---------ETTEEEEEEEETTSCEEEEEESEEEECCCTTCHHHHHHCTTCCCCCC------------------------
T ss_pred             ---------cCCcEEEEEEcCCCCeEEEeeceeeccCCccceeeeeeccccccccc------------------------
Confidence                     456677777665    3799999999999999997765222100000                        


Q ss_pred             CCcEEEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccC
Q 010200          288 AGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEV  367 (515)
Q Consensus       288 ~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  367 (515)
                                                                                                      
T Consensus       182 --------------------------------------------------------------------------------  181 (288)
T d3c96a1         182 --------------------------------------------------------------------------------  181 (288)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcceEEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHH
Q 010200          368 PPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKY  447 (515)
Q Consensus       368 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y  447 (515)
                                         ....|..++++++|||+|++.|+.|||+|++++|+..|++.|.+.    .+  ...+|+.|
T Consensus       182 -------------------~~~~~~~~~~~~~gda~h~~~p~~g~G~~~ai~d~~~l~~~l~~~----~~--~~~al~~y  236 (288)
T d3c96a1         182 -------------------PLPHWGRGRITLLGDAAHLMYPMGANGASQAILDGIELAAALARN----AD--VAAALREY  236 (288)
T ss_dssp             -------------------CCSCCCBTTEEECTHHHHCCCSSTTCTHHHHHHHHHHHHHHHHHC----SS--HHHHHHHH
T ss_pred             -------------------cccccccCcceecccccceeCCccccchhhhhhhHHHHHHHHhhC----CC--HHHHHHHH
Confidence                               012245678999999999999999999999999999999999762    23  37899999


Q ss_pred             HHHhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHhc
Q 010200          448 EAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGA  487 (515)
Q Consensus       448 ~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~  487 (515)
                      ++.|++++..++..++.+...+..........++..+..+
T Consensus       237 ~~~r~pr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (288)
T d3c96a1         237 EEARRPTANKIILANREREKEEWAAASRPKTEKSAALEAI  276 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHH
Confidence            9999999999999998887765443333333455555443

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=1.5e-27  Score=230.36  Aligned_cols=281  Identities=17%  Similarity=0.157  Sum_probs=215.0

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      ++||+||||||+||++|+.|+++    |++|+||||.+...        .....++..++++++++|+.+|+++.+.+..
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~----G~~v~vlE~~~~~~--------~~~~~~~~~l~~~~~~~l~~lg~~~~l~~~~   69 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKA----GIDNVILERQTPDY--------VLGRIRAGVLEQGMVDLLREAGVDRRMARDG   69 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHH----TCCEEEECSSCHHH--------HHTCCCCCEECHHHHHHHHHTTCCHHHHHHC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC----CCCEEEEeCCCCCC--------CCCCceEEEECHHHHHHHHHcCchHHHHhhc
Confidence            57999999999999999999996    99999999987541        1123457789999999999999999998876


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                      . +...+.+++..........  ........+.+.+..+.+.|.+.+.+.+ ..+.++..++....          .   
T Consensus        70 ~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~~----------~---  132 (292)
T d1k0ia1          70 L-VHEGVEIAFAGQRRRIDLK--RLSGGKTVTVYGQTEVTRDLMEAREACG-ATTVYQAAEVRLHD----------L---  132 (292)
T ss_dssp             E-EESCEEEEETTEEEEECHH--HHHTSCCEEECCHHHHHHHHHHHHHHTT-CEEESSCEEEEEEC----------T---
T ss_pred             c-cccceEEEecccccccccc--cccccccceeecHHHHHHHHHHHHHhCC-CcEEEcceeeeeee----------e---
Confidence            6 6677777765544333222  2233455678999999999999999998 45566666555543          1   


Q ss_pred             cccccccCCeeEEEc-CCCc--EEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCCceEEEEecCCCcE
Q 010200          215 ATTLFTKGHLAKLDL-SDGT--SLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPI  291 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~-~~g~--~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  291 (515)
                            +.+.+.|.+ .+|+  ++.||+||+|||.+|.+|+.+..                                   
T Consensus       133 ------~~~~~~v~~~~~g~~~~i~a~~vVgADG~~S~vR~~i~~-----------------------------------  171 (292)
T d1k0ia1         133 ------QGERPYVTFERDGERLRLDCDYIAGCDGFHGISRQSIPA-----------------------------------  171 (292)
T ss_dssp             ------TSSSCEEEEEETTEEEEEECSEEEECCCTTCSTGGGSCG-----------------------------------
T ss_pred             ------ccCceEEEEecCCcEEEEEeCEEEECCCCCCcccceeee-----------------------------------
Confidence                  223455554 3443  68899999999999999986410                                   


Q ss_pred             EEEecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCcce
Q 010200          292 ALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRV  371 (515)
Q Consensus       292 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  371 (515)
                                                                                                      
T Consensus       172 --------------------------------------------------------------------------------  171 (292)
T d1k0ia1         172 --------------------------------------------------------------------------------  171 (292)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEeccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHHHh
Q 010200          372 VKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAER  451 (515)
Q Consensus       372 ~~~~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~~r  451 (515)
                                       ..+..+...++||++|.++|..|+|.|.++.|+..|++.+...+..+.    ...+..|...+
T Consensus       172 -----------------~~~~~~~~~~~~~~~~~~~p~~~~~~n~~~~d~~~l~~~~~~~~~~~~----~~~~~~~~~~~  230 (292)
T d1k0ia1         172 -----------------ERMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGR----GELLERYSAIC  230 (292)
T ss_dssp             -----------------GGSEETTEEECGGGTEECCGGGTCHHHHHHHHHHHHHHHHHHHHHHCC----GGGGGGHHHHH
T ss_pred             -----------------ccccccccccceeeeeecCCccccccccccccccccccceeeEecCCC----HHHhhhhHHHH
Confidence                             012235688999999999999999999999999999999998887653    44577788877


Q ss_pred             hHHHHHHHHHHHHHHHhhcC---CCChHHHHHHHHHHhcccChhHHHHHHHHhhcCCC
Q 010200          452 KPANIVMMAVLDGFQKAYSV---DFGPLNILRAAAFHGAQYISPLKRNIISYASGEQR  506 (515)
Q Consensus       452 ~~~~~~~~~~s~~~~~~~~~---~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~~  506 (515)
                      ..+.....+.+.+...+.+.   ..++...+|...+..+...|..++.++.+..|+-.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~iae~yvg~p~  288 (292)
T d1k0ia1         231 LRRIWKAERFSWWMTSVLHRFPDTDAFSQRIQQTELEYYLGSEAGLATIAENYVGLPY  288 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHhhcCCCCc
Confidence            77777777777777666553   45677888888888888789999999998887644

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=99.90  E-value=1e-21  Score=185.90  Aligned_cols=239  Identities=22%  Similarity=0.210  Sum_probs=175.8

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      +.+|+||||||+||++|+.|++.    |++|+||||.+.+.         ...++++.+++++.++|+++|+..+.... 
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~----G~~v~v~Er~~~~~---------~~~~~g~~~~~~~~~~l~~~g~~~~~~~~-   69 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDA----GVDVDVYERSPQPL---------SGFGTGIVVQPELVHYLLEQGVELDSISV-   69 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSSC---------CCCSCEEECCHHHHHHHHHTTCCGGGTCB-
T ss_pred             CCcEEEECcCHHHHHHHHHHHHC----CCCEEEEeCCCCCC---------CCCceEEEECccHHHHHHHcCcchhhhcc-
Confidence            46799999999999999999996    99999999987652         22356889999999999999997665543 


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                        ......+.+............      .........+...+....   +.+.++++++|+++..              
T Consensus        70 --~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~--------------  124 (265)
T d2voua1          70 --PSSSMEYVDALTGERVGSVPA------DWRFTSYDSIYGGLYELF---GPERYHTSKCLVGLSQ--------------  124 (265)
T ss_dssp             --CCCEEEEEETTTCCEEEEEEC------CCCEEEHHHHHHHHHHHH---CSTTEETTCCEEEEEE--------------
T ss_pred             --CCCcceeEeccCCceeccccc------ccccchhHHHHHHHHHhc---ccceeecCcEEEEEEe--------------
Confidence              334444444333222221110      011223333433343333   3478999999999986              


Q ss_pred             cccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcCCccccccCCceEEEEEEEeecCCceEEEEecCCCcEEEE
Q 010200          215 ATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALL  294 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  294 (515)
                            .++.++++++||+++++|++|+|||.+|.+|..+....                                    
T Consensus       125 ------~~~~v~v~~~dG~~~~~d~~v~adG~~s~~r~~~~~~~------------------------------------  162 (265)
T d2voua1         125 ------DSETVQMRFSDGTKAEANWVIGADGGASVVRKRLLGIE------------------------------------  162 (265)
T ss_dssp             ------CSSCEEEEETTSCEEEESEEEECCCTTCHHHHHHHCCC------------------------------------
T ss_pred             ------eCCceEEEECCCCEEEEEEEeccccccccccccccccc------------------------------------
Confidence                  55679999999999999999999999999876321000                                    


Q ss_pred             ecCCCceEEEEEcCCCChHHhhcCCHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhccccCccccccccccCCcceEEe
Q 010200          295 PIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKL  374 (515)
Q Consensus       295 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  374 (515)
                                                                                                      
T Consensus       163 --------------------------------------------------------------------------------  162 (265)
T d2voua1         163 --------------------------------------------------------------------------------  162 (265)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccceeeeccccccccccccCcEEEEcccccccCCccccchhhcHHHHHHHHHHHHHhHhcCCCcchHHHHHHHHHHhhHH
Q 010200          375 ASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPA  454 (515)
Q Consensus       375 ~~~~~~~p~~~~~~~~~~~~~v~lvGDAAh~~~P~~G~G~n~al~da~~La~~l~~~~~~~~~~~~~~al~~Y~~~r~~~  454 (515)
                                  ....+....+...||++|...|..++|.+++++|+..|+..+...    .+  ....++.|+..|.++
T Consensus       163 ------------~~~~~~~~~~~~~~~~a~~~~p~~~~g~~~~~~d~~~l~~~l~~~----~~--~~~~l~~~~~~r~~~  224 (265)
T d2voua1         163 ------------TVDRMVHGRVLLIGDAAVTPRPHAAAGGAKASDDARTLAEVFTKN----HD--LRGSLQSWETRQLQQ  224 (265)
T ss_dssp             ------------CCSCSEETTEEECGGGTSBCCGGGSCHHHHHHHHHHHHHHHHHHC----SC--HHHHHHHHHHHHHHH
T ss_pred             ------------cccccccccccccccccccccccccccceeeeccHHHHHHHHhhc----CC--HHHHHHHHHHHHHHH
Confidence                        001122456888999999999999999999999999999988762    23  377899999999999


Q ss_pred             HHHHHHHHHHHHHhhcCC
Q 010200          455 NIVMMAVLDGFQKAYSVD  472 (515)
Q Consensus       455 ~~~~~~~s~~~~~~~~~~  472 (515)
                      .+.++..++.+..+.+..
T Consensus       225 ~~~~~~~~r~~g~~~~~~  242 (265)
T d2voua1         225 GHAYLNKVKKMASRLQHG  242 (265)
T ss_dssp             HHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHhC
Confidence            999988888887766543

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.87  E-value=3.6e-21  Score=191.43  Aligned_cols=135  Identities=14%  Similarity=0.124  Sum_probs=86.5

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcC----CCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCc
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASM----PLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAW  127 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~----~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~  127 (515)
                      +...|||||||||||||++|+.|+|+    .  .|++|+||||...++.+.|         .|..+.+..++.|  +..+
T Consensus        29 ~~~e~DViIVGgGPAGlsaA~~LA~l~~~~~--~Gl~VlllEK~~~pG~k~~---------~Ggvl~~~~l~~l--~p~~   95 (380)
T d2gmha1          29 FAEEADVVIVGAGPAGLSAATRLKQLAAQHE--KDLRVCLVEKAAHIGAHTL---------SGACLDPRAFEEL--FPDW   95 (380)
T ss_dssp             CEEECSEEEECCSHHHHHHHHHHHHHHHHTT--CCCCEEEECSSSSTTTTCC---------CCCEECTHHHHHH--CTTH
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHhhhhhhc--CCCEEEEEcCCCCCCCCcc---------ccccccHHHHHHH--ccch
Confidence            34469999999999999999999971    0  3999999999999976654         2445666655433  1111


Q ss_pred             hhhhh--hhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEe
Q 010200          128 QYVQQ--HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMAL  200 (515)
Q Consensus       128 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~  200 (515)
                      .....  ..........+..........+...........+.+.+..+..++.+.+++.+ +++..+..+.++..
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ae~~g-~~~~~~~~~~~~l~  169 (380)
T d2gmha1          96 KEKGAPLNTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALG-VEVYPGYAAAEILF  169 (380)
T ss_dssp             HHHTCCCCEECCEEEEEEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTT-CEEETTCCEEEEEE
T ss_pred             hhhccccccceecceEEEeeccccccccccCchhcccccceeehhhHHHHHHHHHHhhcc-ceeeeecceeeeee
Confidence            11000  01101122222222222222221122223445578999999999999999998 99999999999876

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.62  E-value=5.6e-17  Score=151.69  Aligned_cols=167  Identities=21%  Similarity=0.279  Sum_probs=94.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      ++|||+||||||+||++|+.|++.    |++|+||||.+.++............ .......  ................
T Consensus         1 M~yDViIIGaG~aGl~aA~~la~~----G~~V~liEk~~~~g~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~   73 (251)
T d2i0za1           1 MHYDVIVIGGGPSGLMAAIGAAEE----GANVLLLDKGNKLGRKLAISGGGRCN-VTNRLPL--DEIVKHIPGNGRFLYS   73 (251)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSSCHHHHHTGGGTCC-CEECSCH--HHHHHTCTBTGGGGHH
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHC----CCcEEEEeCCCCCCcceeccCCccee-ccccccc--chhhcccccchhhhhh
Confidence            369999999999999999999996    99999999998774321100000000 0001110  1111111111111000


Q ss_pred             hccccce---EEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccC
Q 010200          134 RHAYFDK---MQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVD  210 (515)
Q Consensus       134 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~  210 (515)
                      .......   ..+....+.   .+.... .............+.+.|.+.+++.| ++|+++++|+++..          
T Consensus        74 ~~~~~~~~~~~~~~~~~g~---~~~~~~-~~~~~~~~~~~~~i~~~L~~~~~~~g-v~i~~~~~v~~i~~----------  138 (251)
T d2i0za1          74 AFSIFNNEDIITFFENLGV---KLKEED-HGRMFPVSNKAQSVVDALLTRLKDLG-VKIRTNTPVETIEY----------  138 (251)
T ss_dssp             HHHHSCHHHHHHHHHHTTC---CEEECG-GGEEEETTCCHHHHHHHHHHHHHHTT-CEEECSCCEEEEEE----------
T ss_pred             hhhhhhhHHHHHHHHhcCC---cccccc-ccceecccccHHHHHHHHHHHHHHcC-CcccCCcEEEEEEE----------
Confidence            0000000   000000000   000000 00011112334678899999999988 99999999999986          


Q ss_pred             CCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhh
Q 010200          211 STPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVR  251 (515)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr  251 (515)
                               +++....+.+++|++++||.||+|||.+|..+
T Consensus       139 ---------~~~~~~~v~~~~g~~i~a~~vI~AtGg~S~p~  170 (251)
T d2i0za1         139 ---------ENGQTKAVILQTGEVLETNHVVIAVGGKSVPQ  170 (251)
T ss_dssp             ---------ETTEEEEEEETTCCEEECSCEEECCCCSSSGG
T ss_pred             ---------ECCEEEEEEeCCCCeEecCeEEEccCCccccc
Confidence                     12234457888999999999999999999653

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.55  E-value=6.4e-15  Score=139.89  Aligned_cols=62  Identities=13%  Similarity=0.148  Sum_probs=54.7

Q ss_pred             EEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecC
Q 010200          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADG  245 (515)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG  245 (515)
                      ..++...+...|.+.+++.| ++++++++|++++.                    .++.++|.+++| ++.||.||.|+|
T Consensus       145 g~~~p~~~~~~l~~~a~~~G-v~i~~~~~V~~i~~--------------------~~~~v~V~t~~g-~i~a~~VViAaG  202 (281)
T d2gf3a1         145 GVLFSENCIRAYRELAEARG-AKVLTHTRVEDFDI--------------------SPDSVKIETANG-SYTADKLIVSMG  202 (281)
T ss_dssp             EEEEHHHHHHHHHHHHHHTT-CEEECSCCEEEEEE--------------------CSSCEEEEETTE-EEEEEEEEECCG
T ss_pred             cccccccccccccccccccc-ccccCCcEEEEEEE--------------------ECCEEEEEECCc-EEEcCEEEECCC
Confidence            35777899999999999998 99999999999987                    456688998887 599999999999


Q ss_pred             CCch
Q 010200          246 GKSR  249 (515)
Q Consensus       246 ~~S~  249 (515)
                      .+|.
T Consensus       203 ~~s~  206 (281)
T d2gf3a1         203 AWNS  206 (281)
T ss_dssp             GGHH
T ss_pred             Ccch
Confidence            9886

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.52  E-value=6.9e-15  Score=139.16  Aligned_cols=69  Identities=16%  Similarity=0.155  Sum_probs=58.2

Q ss_pred             EechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCC
Q 010200          167 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGG  246 (515)
Q Consensus       167 ~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~  246 (515)
                      .++...+...|.+.+++.| ++|+.+++|++++.                    ++..+.|.+++| ++.||.||.|+|+
T Consensus       147 ~i~~~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~--------------------~~~~~~V~t~~g-~i~a~~vV~AaG~  204 (276)
T d1ryia1         147 HVEPYFVCKAYVKAAKMLG-AEIFEHTPVLHVER--------------------DGEALFIKTPSG-DVWANHVVVASGV  204 (276)
T ss_dssp             BCCHHHHHHHHHHHHHHTT-CEEETTCCCCEEEC--------------------SSSSEEEEETTE-EEEEEEEEECCGG
T ss_pred             eeecccchhHHHHHHHHcC-CEEecceEEEeEEe--------------------ecceEEEecCCe-EEEcCEEEECCCc
Confidence            4677889999999999998 99999999999976                    446688888777 5999999999999


Q ss_pred             Cch-hhhhcCCc
Q 010200          247 KSR-VRELAGFK  257 (515)
Q Consensus       247 ~S~-vr~~l~~~  257 (515)
                      ||. +.+.+|+.
T Consensus       205 ~s~~l~~~~G~~  216 (276)
T d1ryia1         205 WSGMFFKQLGLN  216 (276)
T ss_dssp             GTHHHHHHTTCC
T ss_pred             cHHHHHhhcCCC
Confidence            996 55666654

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.51  E-value=2.6e-14  Score=133.55  Aligned_cols=158  Identities=16%  Similarity=0.202  Sum_probs=93.1

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCC-------CCCCCCCCCCC-cEEEeCHh-HHHHHHH
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS-------NFIKKEDPPDP-RVSTVTPA-TISFFKE  123 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~-------~~~~~~~~~~~-~~~~l~~~-~~~~l~~  123 (515)
                      .+.+||+|||||||||++|+.|++.    |++|+||||.+.++.+       .|+........ .-....+. ....|..
T Consensus         2 ~~~~DViIIGaG~aGl~aA~~la~~----G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~   77 (253)
T d2gqfa1           2 SQYSENIIIGAGAAGLFCAAQLAKL----GKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALAR   77 (253)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHH
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHC----CCcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhh
Confidence            4568999999999999999999996    9999999999887532       12111111111 11111122 1223433


Q ss_pred             cCCchhhhhhhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCC
Q 010200          124 IGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPS  203 (515)
Q Consensus       124 lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~  203 (515)
                      ....+.+.-...   ....+......  ..+           ..-....+.+.|.+.+++.| ++|+++++|++++.   
T Consensus        78 ~~~~~~~~~~~~---~g~~~~~~~~~--~~~-----------~~~~a~~i~~~L~~~~~~~g-V~i~~~~~V~~i~~---  137 (253)
T d2gqfa1          78 YTNWDFISLVAE---QGITYHEKELG--QLF-----------CDEGAEQIVEMLKSECDKYG-AKILLRSEVSQVER---  137 (253)
T ss_dssp             SCHHHHHHHHHH---TTCCEEECSTT--EEE-----------ETTCTHHHHHHHHHHHHHHT-CEEECSCCEEEEEE---
T ss_pred             hcccchhhhhhh---cCcceeeecCC--ccc-----------cccchhHHHHHHHHHHHHcC-CCeecCceEEEEEe---
Confidence            332221111000   00011111100  000           11235678899999999988 99999999999987   


Q ss_pred             CCCcccCCCCCcccccccCCeeE-EEcCCCcEEEeeEEEEecCCCch
Q 010200          204 SSSISVDSTPSATTLFTKGHLAK-LDLSDGTSLYAKLVVGADGGKSR  249 (515)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~-v~~~~g~~~~ad~vV~AdG~~S~  249 (515)
                            .+         ++..+. +...++.+++||.||+|+|..|.
T Consensus       138 ------~~---------~~~~v~~~~~~~~~~~~a~~VIiAtGG~S~  169 (253)
T d2gqfa1         138 ------IQ---------NDEKVRFVLQVNSTQWQCKNLIVATGGLSM  169 (253)
T ss_dssp             ------CC---------SCSSCCEEEEETTEEEEESEEEECCCCSSC
T ss_pred             ------ec---------CCceeEEEEecCCEEEEeCEEEEcCCcccc
Confidence                  11         112222 23346678999999999999874

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.38  E-value=5.6e-13  Score=126.92  Aligned_cols=140  Identities=16%  Similarity=0.220  Sum_probs=91.8

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhh
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQ  132 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~  132 (515)
                      +..+||||||||++||++|+.|++.    |++|+||||.+.++.......  .+                  |+.-....
T Consensus         5 ~~~~dV~IIGAG~sGl~~a~~L~~~----G~~v~i~Ek~~~iGGtW~~n~--yp------------------g~~~d~~~   60 (298)
T d1w4xa1           5 PEEVDVLVVGAGFSGLYALYRLREL----GRSVHVIETAGDVGGVWYWNR--YP------------------GARCDIES   60 (298)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSSCTHHHHCC--CT------------------TCBCSSCT
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhC----CCCEEEEEcCCCcccccccCC--CC------------------Cceecccc
Confidence            4579999999999999999999996    999999999998731100000  00                  00000000


Q ss_pred             hhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCc--eEEcCCeeEEEEeCCCCCCcccC
Q 010200          133 HRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQ--KTIYPSRLTSMALLPSSSSISVD  210 (515)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v--~i~~~~~v~~i~~~~~~~~~~~~  210 (515)
                      ...    .   +....   ..+.    ..........+..+.++|.+.+++.+ +  .|+++++|+++..          
T Consensus        61 ~~~----~---~s~~~---~~~~----~~~~~~~~p~~~e~~~Yl~~~a~~~~-L~~~I~f~t~V~~~~~----------  115 (298)
T d1w4xa1          61 IEY----C---YSFSE---EVLQ----EWNWTERYASQPEILRYINFVADKFD-LRSGITFHTTVTAAAF----------  115 (298)
T ss_dssp             TTS----S---CCSCH---HHHH----HCCCCBSSCBHHHHHHHHHHHHHHTT-GGGGEECSCCEEEEEE----------
T ss_pred             ccc----c---ccccc---cccC----CCCCccccCccchHHHHHHHHHHHcC-CcccccCCcEEEEEEE----------
Confidence            000    0   00000   0000    00011123467889999999998886 5  5999999999987          


Q ss_pred             CCCCcccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200          211 STPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR  249 (515)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~  249 (515)
                              ++....++|++.++.++++|+||.|+|..|.
T Consensus       116 --------de~~~~W~V~~~~~~~~~~~~~i~atG~ls~  146 (298)
T d1w4xa1         116 --------DEATNTWTVDTNHGDRIRARYLIMASGQLSD  146 (298)
T ss_dssp             --------ETTTTEEEEEETTCCEEEEEEEEECCCSCCC
T ss_pred             --------ecCCCceeeccccccccccceEEEeeccccc
Confidence                    1234679999999999999999999998663

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.37  E-value=5.7e-13  Score=127.95  Aligned_cols=166  Identities=14%  Similarity=0.087  Sum_probs=92.4

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhH----------H-HHH
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPAT----------I-SFF  121 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~-~~l  121 (515)
                      ..++||||||||++||++|+.|++.    |.+|+|+||.+..+..+..      ...++......          . .+.
T Consensus        14 ~e~~DVlVIG~G~aGl~aA~~la~~----G~~V~lvEK~~~~gG~s~~------s~G~~~~~~~~~~~~~~~~d~~~~~~   83 (308)
T d1y0pa2          14 HDTVDVVVVGSGGAGFSAAISATDS----GAKVILIEKEPVIGGNAKL------AAGGMNAAWTDQQKAKKITDSPELMF   83 (308)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSSCTTGGG------CCSCEECSSCHHHHHTTCCCCHHHHH
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHC----CCcEEEEecCCCCCCccee------cCCCCccccchhhhhhhccchHHHHH
Confidence            4579999999999999999999996    9999999999876432210      01111111000          0 000


Q ss_pred             H----Hc-CC----------------chhhhhhhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHH
Q 010200          122 K----EI-GA----------------WQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSC  180 (515)
Q Consensus       122 ~----~l-gl----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~  180 (515)
                      +    .- ++                .+.+.+.+. ++................+        .........+...+.+.
T Consensus        84 ~d~~~~~~~~~d~~lv~~~~~~~~~~i~~L~~~Gv-~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~  154 (308)
T d1y0pa2          84 EDTMKGGQNINDPALVKVLSSHSKDSVDWMTAMGA-DLTDVGMMGGASVNRAHRP--------TGGAGVGAHVVQVLYDN  154 (308)
T ss_dssp             HHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTC-CCCEEECCTTCSSCCEEES--------TTTCCHHHHHHHHHHHH
T ss_pred             HHHHhhhhhccchHHHHHHHHhhhHHHHHHHHcCC-Ccccccccccccccccccc--------ccccchHHHHHHHHHHH
Confidence            0    00 00                111111111 1111111111111000000        00112345678888999


Q ss_pred             HhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCc--EEEeeEEEEecCCCchhhhhc
Q 010200          181 MQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT--SLYAKLVVGADGGKSRVRELA  254 (515)
Q Consensus       181 ~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~--~~~ad~vV~AdG~~S~vr~~l  254 (515)
                      +.+.| ++|+++++++++..           ++++     ...++.+.-.++.  +++||.||.|+|.++...+.+
T Consensus       155 a~~~g-v~i~~~~~v~~li~-----------~~~G-----~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~~n~~~~  213 (308)
T d1y0pa2         155 AVKRN-IDLRMNTRGIEVLK-----------DDKG-----TVKGILVKGMYKGYYWVKADAVILATGGFAKNNERV  213 (308)
T ss_dssp             HHHTT-CEEESSEEEEEEEE-----------CTTS-----CEEEEEEEETTTEEEEEECSEEEECCCCCTTCHHHH
T ss_pred             HHhcc-ceEEEeeccchhhh-----------hccc-----ccccccccccccceeEeecCeEEEccCcccccHHHH
Confidence            98888 99999999999876           1111     1123444333332  689999999999998765543

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.37  E-value=5.5e-13  Score=127.84  Aligned_cols=70  Identities=14%  Similarity=0.165  Sum_probs=55.9

Q ss_pred             EEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCe-eEEEcCCCcEEEeeEEEEec
Q 010200          166 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL-AKLDLSDGTSLYAKLVVGAD  244 (515)
Q Consensus       166 ~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~g~~~~ad~vV~Ad  244 (515)
                      ..++...+...|.+.+++.| ++|+.+++|++++.                    .++. +.|.+++| +++||.||.|+
T Consensus       143 g~~~p~~l~~~l~~~a~~~g-v~i~~~~~V~~i~~--------------------~~~~v~~V~T~~g-~i~a~~VV~aa  200 (305)
T d1pj5a2         143 GLASAARAVQLLIKRTESAG-VTYRGSTTVTGIEQ--------------------SGGRVTGVQTADG-VIPADIVVSCA  200 (305)
T ss_dssp             EEECHHHHHHHHHHHHHHTT-CEEECSCCEEEEEE--------------------ETTEEEEEEETTE-EEECSEEEECC
T ss_pred             cccchhhhhhhHHhhhhccc-ccccCCceEEEEEE--------------------eCCEEEEEeccce-eEECCEEEEec
Confidence            45778899999999999998 99999999999987                    3344 44777666 69999999999


Q ss_pred             CCCch-hhhhcCCc
Q 010200          245 GGKSR-VRELAGFK  257 (515)
Q Consensus       245 G~~S~-vr~~l~~~  257 (515)
                      |.||. +.+.+|..
T Consensus       201 G~~s~~l~~~~g~~  214 (305)
T d1pj5a2         201 GFWGAKIGAMIGMA  214 (305)
T ss_dssp             GGGHHHHHHTTTCC
T ss_pred             chhHHHHHHHcCCc
Confidence            99986 33444543

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.32  E-value=4.4e-12  Score=122.44  Aligned_cols=167  Identities=14%  Similarity=0.110  Sum_probs=93.3

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHh----------HHH-H
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPA----------TIS-F  120 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~-~  120 (515)
                      ...++||||||||++||++|+.|++.    |++|+|+||.+..+..+...      ..++.....          +.+ .
T Consensus        20 ~~et~DVvVIG~G~aGl~aA~~la~~----G~~V~llEk~~~~gG~s~~s------~Ggi~~~~~~~~~~~~~~d~~~~~   89 (322)
T d1d4ca2          20 VKETTDVVIIGSGGAGLAAAVSARDA----GAKVILLEKEPIPGGNTKLA------AGGMNAAETKPQAKLGIEDKKQIM   89 (322)
T ss_dssp             CCEECSEEEECSSHHHHHHHHHHHTT----TCCEEEECSSSSSCTTGGGC------CSCEECSSCHHHHHTTCCCCHHHH
T ss_pred             CCCcceEEEECcCHHHHHHHHHHHHC----CCcEEEEeCCCCCCCccccc------CCcccccCchhhhhcccCCCHHHH
Confidence            44568999999999999999999996    99999999998764322111      111111100          000 1


Q ss_pred             HHH---c--CC----------------chhhhhhhccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHH
Q 010200          121 FKE---I--GA----------------WQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLS  179 (515)
Q Consensus       121 l~~---l--gl----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~  179 (515)
                      .+.   .  ++                .+.+.+.+. ++................        +.........+.+.|.+
T Consensus        90 ~~d~~~~~~~~~d~~~~~~~~~~~~~~i~~l~~~Gv-~~~~~~~~~g~~~~~~~~--------~~~~~~~~~~~~~~l~~  160 (322)
T d1d4ca2          90 IDDTMKGGRNINDPELVKVLANNSSDSIDWLTSMGA-DMTDVGRMGGASVNRSHR--------PTGGAGVGAHVAQVLWD  160 (322)
T ss_dssp             HHHHHHHTTTCSCHHHHHHHHHTHHHHHHHHHHTTC-CCCEEECCTTCSSCCEEE--------STTTCCSHHHHHHHHHH
T ss_pred             HHHHHhccccccCHHHhhhhhhhhhhhhhhhhhhcc-cccccccccccccccccc--------cccccchhHHHHHHHHH
Confidence            110   0  00                011111111 111111000000000000        00011234578888999


Q ss_pred             HHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCc--EEEeeEEEEecCCCchhhhhc
Q 010200          180 CMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT--SLYAKLVVGADGGKSRVRELA  254 (515)
Q Consensus       180 ~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~--~~~ad~vV~AdG~~S~vr~~l  254 (515)
                      .+.+.| ++|+++++|+++..           ++++     ...++.+.-.++.  .+.||.||.|+|.++...+.+
T Consensus       161 ~a~~~g-v~i~~~t~v~~li~-----------d~~G-----~V~Gv~~~~~~~~~~~i~Ak~VIlAtGG~~~n~~~~  220 (322)
T d1d4ca2         161 NAVKRG-TDIRLNSRVVRILE-----------DASG-----KVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERV  220 (322)
T ss_dssp             HHHHTT-CEEETTEEEEEEEC-----------CSSS-----CCCEEEEEETTTEEEEEECSEEEECCCCCTTCHHHH
T ss_pred             HHHhcC-ceEEEeeecccccc-----------cccc-----cccceEEEeecccEEEEeCCeEEEcCCCcccCHHHH
Confidence            999988 99999999999976           1111     2234444444443  689999999999988755443

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.29  E-value=1.1e-12  Score=127.61  Aligned_cols=163  Identities=10%  Similarity=0.002  Sum_probs=88.5

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      -+|+|||||++||++|..|++.+  .+++|+||||+..++.........   +....+. .....   ............
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~--~~~~v~vfEk~~~iGG~W~~~~~~---~~~~~~~-~~~~~---~~~~~~~~~~~~   75 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEK--AFDQVTLFERRGSPGGVWNYTSTL---SNKLPVP-STNPI---LTTEPIVGPAAL   75 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTT--CCSEEEEECSSSSSSTTCSCCSCC---CSCCCSS-BCCTT---CCCCCBCCSSSC
T ss_pred             CeEEEECcCHHHHHHHHHHHHhC--CCCCEEEEECCCCCCCcccccCCC---CcccCCc-ccccc---cccccccccccc
Confidence            36999999999999999998753  147999999999875322110000   0000000 00000   000000000000


Q ss_pred             cccceEEEE----eCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCC
Q 010200          136 AYFDKMQVW----DYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDS  211 (515)
Q Consensus       136 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~  211 (515)
                       ......++    .........+...... ......+.+..+.++|.+.+...+ ..|+++++|++++.           
T Consensus        76 -~~~~s~~y~~l~~~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~yl~~~~~~~~-~~I~~~t~V~~v~~-----------  141 (335)
T d2gv8a1          76 -PVYPSPLYRDLQTNTPIELMGYCDQSFK-PQTLQFPHRHTIQEYQRIYAQPLL-PFIKLATDVLDIEK-----------  141 (335)
T ss_dssp             -CBCCCCCCTTCBCSSCHHHHSCTTCCCC-TTCCSSCBHHHHHHHHHHHHGGGG-GGEECSEEEEEEEE-----------
T ss_pred             -cccccccchhhhcCCcHhhhhhhhhcCC-cccccCCchHHHHHHHHHHHHHhh-hcccCceEEEEEEe-----------
Confidence             00000000    0000000001100001 111123678999999999998887 78999999999987           


Q ss_pred             CCCcccccccCCeeEEEcCCCc------EEEeeEEEEecCCCchh
Q 010200          212 TPSATTLFTKGHLAKLDLSDGT------SLYAKLVVGADGGKSRV  250 (515)
Q Consensus       212 ~~~~~~~~~~~~~~~v~~~~g~------~~~ad~vV~AdG~~S~v  250 (515)
                               .++.++|++.+++      +..+|+||.|+|..|..
T Consensus       142 ---------~~~~w~Vt~~~~~~~~~~~~~~~d~VI~AtG~~s~p  177 (335)
T d2gv8a1         142 ---------KDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVP  177 (335)
T ss_dssp             ---------ETTEEEEEEEESSTTCCEEEEEESEEEECCCSSSSB
T ss_pred             ---------cCCEEEEEEEecCCCCeEEEEEeeEEEEcccccccc
Confidence                     4466777765432      46799999999998853

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.25  E-value=9.5e-12  Score=119.78  Aligned_cols=68  Identities=19%  Similarity=0.117  Sum_probs=49.6

Q ss_pred             hHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCc--EEEeeEEEEecCCC
Q 010200          170 NKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT--SLYAKLVVGADGGK  247 (515)
Q Consensus       170 r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~--~~~ad~vV~AdG~~  247 (515)
                      -..+...|.+.+++.| ++++++++++++..           ++++     ...++.+...++.  .+.++.||.|+|.+
T Consensus       147 g~~i~~~L~~~~~~~g-~~i~~~~~v~~l~~-----------~~~g-----~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~  209 (317)
T d1qo8a2         147 GPEIIDTLRKAAKEQG-IDTRLNSRVVKLVV-----------NDDH-----SVVGAVVHGKHTGYYMIGAKSVVLATGGY  209 (317)
T ss_dssp             HHHHHHHHHHHHHHTT-CCEECSEEEEEEEE-----------CTTS-----BEEEEEEEETTTEEEEEEEEEEEECCCCC
T ss_pred             chhhhHHHHHHhhhcc-ceeeeccchhheee-----------cccc-----cceeeEeecccceEEEEeccceEEecccc
Confidence            3568899999999998 99999999999866           1111     2233444444554  58999999999998


Q ss_pred             chhhhhc
Q 010200          248 SRVRELA  254 (515)
Q Consensus       248 S~vr~~l  254 (515)
                      +.-.+.+
T Consensus       210 ~~n~~~~  216 (317)
T d1qo8a2         210 GMNKEMI  216 (317)
T ss_dssp             TTCHHHH
T ss_pred             ccCHHHH
Confidence            8755543

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.23  E-value=2.6e-12  Score=120.41  Aligned_cols=40  Identities=18%  Similarity=0.091  Sum_probs=33.8

Q ss_pred             cccCcEEEEcccccccCCccccch-hhcHHHHHHHHHHHHH
Q 010200          391 YVSKRVVLIGDAAHTVHPLAGQGV-NLGFGDASTLSRIIAE  430 (515)
Q Consensus       391 ~~~~~v~lvGDAAh~~~P~~G~G~-n~al~da~~La~~l~~  430 (515)
                      |..++|+++|||+|.+.|.+++|+ +.++++|..|++++.+
T Consensus       304 ~~~~~v~~~GD~~~~~~~~~~~gA~~sG~~aA~~l~~~~~~  344 (347)
T d1b5qa1         304 APVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQK  344 (347)
T ss_dssp             CCBTTEEECSGGGCSSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCEEEEEccccCcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence            556899999999999999999995 6678888888888765

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.22  E-value=1.7e-11  Score=113.46  Aligned_cols=40  Identities=33%  Similarity=0.405  Sum_probs=37.3

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      |+.+|||||||||++||++|+.|++.    |++|+||||++.++
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~~----G~~V~vlE~~~~~G   41 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSVD----GKKVLHIDKQDHYG   41 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSSC
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHC----CCCEEEEcCCCCCC
Confidence            56789999999999999999999996    99999999999875

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=6.8e-11  Score=115.14  Aligned_cols=36  Identities=42%  Similarity=0.660  Sum_probs=33.8

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK   96 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~   96 (515)
                      ||||||||++||++|+.|++.    |++|+|||+++.++.
T Consensus         1 DViVIGaG~aGL~aA~~L~~~----G~~V~VlE~~~~~GG   36 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDS----GLNVVVLEARDRVGG   36 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHT----TCCEEEEESSSSSBT
T ss_pred             CEEEECCCHHHHHHHHHHHhC----CCCEEEEecCCCCcc
Confidence            899999999999999999996    999999999998854

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=1.4e-10  Score=93.67  Aligned_cols=95  Identities=20%  Similarity=0.252  Sum_probs=77.1

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      -+|+|||||++|+-+|..|++.    |.+|+|+|+.+.+.          +                             
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~----G~~Vtlve~~~~~l----------~-----------------------------   58 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGL----GAKTHLFEMFDAPL----------P-----------------------------   58 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSSS----------T-----------------------------
T ss_pred             CEEEEECCChhhHHHHHHhhcc----ccEEEEEeecchhh----------h-----------------------------
Confidence            4799999999999999999997    99999999988540          0                             


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                       .                              . -..+.+.+.+.+++.| ++++++++|++++.               
T Consensus        59 -~------------------------------~-d~~~~~~~~~~l~~~G-V~~~~~~~v~~i~~---------------   90 (116)
T d1gesa2          59 -S------------------------------F-DPMISETLVEVMNAEG-PQLHTNAIPKAVVK---------------   90 (116)
T ss_dssp             -T------------------------------S-CHHHHHHHHHHHHHHS-CEEECSCCEEEEEE---------------
T ss_pred             -h------------------------------c-chhhHHHHHHHHHHCC-CEEEeCCEEEEEEE---------------
Confidence             0                              0 0234566777777788 99999999999976               


Q ss_pred             ccccccCCeeEEEcCCCcEEEeeEEEEecC
Q 010200          216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADG  245 (515)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG  245 (515)
                          +....+++++++|+++.+|.||.|.|
T Consensus        91 ----~~~~~~~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          91 ----NTDGSLTLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             ----CTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             ----cCCcEEEEEECCCCEEEcCEEEEecC
Confidence                12345789999999999999999998

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.14  E-value=4e-11  Score=114.11  Aligned_cols=36  Identities=42%  Similarity=0.685  Sum_probs=33.8

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      +||+||||||+||++|+.|+++    |++|+|||+.+.++
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~----G~~V~vlE~~~~~G   36 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSR----GTDAVLLESSARLG   36 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTT----TCCEEEECSSSSSB
T ss_pred             CeEEEECCCHHHHHHHHHHHhC----CCCEEEEecCCCCC
Confidence            5899999999999999999996    99999999998875

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=99.07  E-value=1e-09  Score=103.14  Aligned_cols=144  Identities=18%  Similarity=0.222  Sum_probs=87.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      .++||+||||||+||++|+.|++.   .|++|+|||+.+.++...++..   .......+......++.++++       
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~---~G~~V~vlE~~~~~GG~~~~~g---~~~~~~~~~~~~~~~~~~~g~-------   98 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKN---PNVQVAIIEQSVSPGGGAWLGG---QLFSAMIVRKPAHLFLDEIGV-------   98 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTS---TTSCEEEEESSSSCCTTTTCCS---TTCCCEEEETTTHHHHHHHTC-------
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHc---cCCeEEEEecCCCCCCceeecC---EEcCHHHHhhhHHHHHHHcCC-------
Confidence            468999999999999999999863   3999999999988764333111   111123344444455554443       


Q ss_pred             hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (515)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~  213 (515)
                         .+.     .              ......+...+..+...+.+.+.+.+ ..+..++.+..+.....          
T Consensus        99 ---~~~-----~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------  145 (278)
T d1rp0a1          99 ---AYD-----E--------------QDTYVVVKHAALFTSTIMSKLLARPN-VKLFNAVAAEDLIVKGN----------  145 (278)
T ss_dssp             ---CCE-----E--------------CSSEEEESCHHHHHHHHHHHHHTSTT-EEEEETEEEEEEEEETT----------
T ss_pred             ---cee-----c--------------CCccceecccHHHHHHHHHHHHHhCC-CEEEeCCcceeeeecCC----------
Confidence               100     0              00111123345667777777777666 88999988888765100          


Q ss_pred             CcccccccCCeeEEE------------cCCCcEEEeeEEEEecCCCchh
Q 010200          214 SATTLFTKGHLAKLD------------LSDGTSLYAKLVVGADGGKSRV  250 (515)
Q Consensus       214 ~~~~~~~~~~~~~v~------------~~~g~~~~ad~vV~AdG~~S~v  250 (515)
                             ...++...            ..++.++.+++||+|+|.....
T Consensus       146 -------~v~gv~~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~~~~  187 (278)
T d1rp0a1         146 -------RVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPF  187 (278)
T ss_dssp             -------EEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTT
T ss_pred             -------eEEEEEeccceeeeeecccccccceeeccceEEECcCCCccc
Confidence                   00011110            1123479999999999976543

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.03  E-value=3.2e-10  Score=109.39  Aligned_cols=39  Identities=28%  Similarity=0.499  Sum_probs=35.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK   96 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~   96 (515)
                      .+.+|+||||||+||++|+.|++.    |++|+|||+.+.++.
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~----G~~V~vlE~~~~~GG   67 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGA----GHQVTVLEASERPGG   67 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHH----TCEEEEECSSSSSBT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC----CCCEEEEeCCCCCCC
Confidence            456899999999999999999996    999999999988753

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.02  E-value=1.1e-09  Score=105.64  Aligned_cols=38  Identities=26%  Similarity=0.430  Sum_probs=34.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      ..+||||||||+|||++|+.|++.    |.+|+|+||.+..+
T Consensus         4 ~~~DVvVIG~G~AGl~AAl~aa~~----G~~V~liEK~~~~~   41 (336)
T d2bs2a2           4 QYCDSLVIGGGLAGLRAAVATQQK----GLSTIVLSLIPVKR   41 (336)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHTT----TCCEEEECSSCGGG
T ss_pred             eecCEEEECcCHHHHHHHHHHHHC----CCCEEEEecCCCCC
Confidence            458999999999999999999996    99999999987653

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.97  E-value=2.6e-10  Score=105.76  Aligned_cols=39  Identities=31%  Similarity=0.389  Sum_probs=34.3

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      +..+.+|||||||++||++|+.|++.    |++|+||||+...
T Consensus         3 ~~~~~kVvVIGaGiaGl~~A~~L~~~----G~~V~vier~~~~   41 (268)
T d1c0pa1           3 MHSQKRVVVLGSGVIGLSSALILARK----GYSVHILARDLPE   41 (268)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSCTT
T ss_pred             CCCCCcEEEECccHHHHHHHHHHHHC----CCCEEEEeCCCCC
Confidence            34556899999999999999999996    9999999998654

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.96  E-value=2.3e-09  Score=88.52  Aligned_cols=99  Identities=16%  Similarity=0.284  Sum_probs=75.7

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      .-+|+|||||++|+-+|..|++.    |.+|+|+|+.+.+-..                               .     
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~----g~~Vtvie~~~~~l~~-------------------------------~-----   74 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKA----NMHVTLLDTAARVLER-------------------------------V-----   74 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSTTTT-------------------------------T-----
T ss_pred             CCEEEEECCchHHHHHHHHHHhh----Ccceeeeeeccccccc-------------------------------c-----
Confidence            45899999999999999999996    9999999998865100                               0     


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                                                        ....+.+.+.+.+++.| +++++|++|++++..           . 
T Consensus        75 ----------------------------------~~~~~~~~~~~~~~~~G-V~i~~~~~v~~i~~~-----------~-  107 (133)
T d1q1ra2          75 ----------------------------------TAPPVSAFYEHLHREAG-VDIRTGTQVCGFEMS-----------T-  107 (133)
T ss_dssp             ----------------------------------SCHHHHHHHHHHHHHHT-CEEECSCCEEEEEEC-----------T-
T ss_pred             ----------------------------------cchhhhhhhhhcccccc-cEEEeCCeEEEEEEe-----------C-
Confidence                                              00123455666677778 999999999999761           0 


Q ss_pred             cccccccCCeeEEEcCCCcEEEeeEEEEecC
Q 010200          215 ATTLFTKGHLAKLDLSDGTSLYAKLVVGADG  245 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG  245 (515)
                           ++.....+.+++|+++.+|+||.|.|
T Consensus       108 -----~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2         108 -----DQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             -----TTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             -----CCceEEEEECCCCCEEECCEEEEeeC
Confidence                 02233458889999999999999987

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.96  E-value=9.5e-10  Score=98.54  Aligned_cols=129  Identities=18%  Similarity=0.161  Sum_probs=77.6

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC-CCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL-GKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      .||||||||||||+.+|+.++|.    |.+++|+|++... +.-.|+...+       ... .+. +-++.+        
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~----G~ktllit~~~~~ig~~~cnp~~g-------g~~-kg~-l~reid--------   60 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQK----GVRVGLLTQSLDAVMMPFLPPKPP-------FPP-GSL-LERAYD--------   60 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT----TCCEEEEESCGGGTTCCSSCCCSC-------CCT-TCH-HHHHCC--------
T ss_pred             CCcEEEECcCHHHHHHHHHHHHC----CCcEEEEEeccchhcccccCCccc-------cCC-Ccc-eeeeee--------
Confidence            59999999999999999999997    9999999987432 2222211000       000 000 000000        


Q ss_pred             hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (515)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~  213 (515)
                                  .              ..+   .+  ..+...+.+.+....+.+|+.+ +|+++..             
T Consensus        61 ------------~--------------kG~---av--~a~raQ~k~~l~~~~nL~i~q~-~V~dli~-------------   95 (230)
T d2cula1          61 ------------P--------------KDE---RV--WAFHARAKYLLEGLRPLHLFQA-TATGLLL-------------   95 (230)
T ss_dssp             ------------T--------------TCC---CH--HHHHHHHHHHHHTCTTEEEEEC-CEEEEEE-------------
T ss_pred             ------------c--------------cch---hh--hhHHHHHHHHHhhhcCHHHHhc-cceeeEe-------------
Confidence                        0              000   00  1122223344455555888865 7888876             


Q ss_pred             CcccccccCCeeEEEcCCCcEEEeeEEEEecCCCchhhhhcC
Q 010200          214 SATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAG  255 (515)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~  255 (515)
                            +++....|.+.+|.++.|+.||.|+|-+..=+=++|
T Consensus        96 ------e~~~v~gV~t~~G~~~~AkaVILtTGTFL~G~ihiG  131 (230)
T d2cula1          96 ------EGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLG  131 (230)
T ss_dssp             ------ETTEEEEEEETTSCCEECSEEEECCTTCSSCEEEET
T ss_pred             ------cccceeeEEeccccEEEEeEEEEccCcceeeEEEEE
Confidence                  133445688899999999999999998765433333

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.95  E-value=1.8e-09  Score=87.41  Aligned_cols=92  Identities=23%  Similarity=0.332  Sum_probs=73.7

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      ..+|+|||||++|+-+|..|++.    |.+|+|+|+.+.+-.+                                     
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~----g~~Vtli~~~~~~l~~-------------------------------------   68 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTA----GVHVSLVETQPRLMSR-------------------------------------   68 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSSSTTTT-------------------------------------
T ss_pred             CCeEEEECcchhHHHHHHHhhcc----cceEEEEeeccccccc-------------------------------------
Confidence            35799999999999999999996    9999999998855000                                     


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                        .                               --..+.+.+.+.+++.| ++++++++|+++..              
T Consensus        69 --~-------------------------------~~~~~~~~~~~~l~~~G-V~i~~~~~v~~~~~--------------  100 (121)
T d1d7ya2          69 --A-------------------------------APATLADFVARYHAAQG-VDLRFERSVTGSVD--------------  100 (121)
T ss_dssp             --T-------------------------------SCHHHHHHHHHHHHTTT-CEEEESCCEEEEET--------------
T ss_pred             --c-------------------------------CCHHHHHHHHHHHHHCC-cEEEeCCEEEEEeC--------------
Confidence              0                               00234566778888888 99999999998853              


Q ss_pred             cccccccCCeeEEEcCCCcEEEeeEEEEecC
Q 010200          215 ATTLFTKGHLAKLDLSDGTSLYAKLVVGADG  245 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG  245 (515)
                              .  .+.++||+++.||+||.|.|
T Consensus       101 --------~--~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2         101 --------G--VVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             --------T--EEEETTSCEEECSEEEECSC
T ss_pred             --------C--EEEECCCCEEECCEEEEeeC
Confidence                    2  45678999999999999988

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.94  E-value=1.1e-09  Score=94.86  Aligned_cols=40  Identities=28%  Similarity=0.437  Sum_probs=35.9

Q ss_pred             CCCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      +...+.+|+|||||||||++|+.|++.    |++|+|||+.+.+
T Consensus        39 ~~~~~k~V~IIGaGPAGL~AA~~la~~----G~~Vtl~E~~~~~   78 (179)
T d1ps9a3          39 PAVQKKNLAVVGAGPAGLAFAINAAAR----GHQVTLFDAHSEI   78 (179)
T ss_dssp             SCSSCCEEEEECCSHHHHHHHHHHHTT----TCEEEEEESSSSS
T ss_pred             CCCCCcEEEEECccHHHHHHHHHHHhh----ccceEEEeccCcc
Confidence            334567899999999999999999995    9999999999987

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.93  E-value=3.8e-09  Score=85.30  Aligned_cols=95  Identities=17%  Similarity=0.272  Sum_probs=75.2

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      +-+++|||||+.|+=+|..|++.    |.+|+|+|+...+.                                ..+    
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~----G~~Vtiv~~~~~ll--------------------------------~~~----   61 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARL----GAEVTVLEAMDKFL--------------------------------PAV----   61 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSSSSS--------------------------------TTS----
T ss_pred             CCeEEEECCChHHHHHHHHHHHc----CCceEEEEeecccC--------------------------------Ccc----
Confidence            46799999999999999999997    99999999988551                                000    


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                                                         -.++...+.+.+++.| ++++++++|++++.              
T Consensus        62 -----------------------------------d~ei~~~l~~~l~~~G-v~i~~~~~v~~i~~--------------   91 (119)
T d3lada2          62 -----------------------------------DEQVAKEAQKILTKQG-LKILLGARVTGTEV--------------   91 (119)
T ss_dssp             -----------------------------------CHHHHHHHHHHHHHTT-EEEEETCEEEEEEE--------------
T ss_pred             -----------------------------------cchhHHHHHHHHHhcC-ceeecCcEEEEEEE--------------
Confidence                                               0235566777788887 99999999999986              


Q ss_pred             cccccccCCeeEEEcCCC---cEEEeeEEEEecC
Q 010200          215 ATTLFTKGHLAKLDLSDG---TSLYAKLVVGADG  245 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g---~~~~ad~vV~AdG  245 (515)
                            .+..+++++.++   +++.||+|+.|.|
T Consensus        92 ------~~~~v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          92 ------KNKQVTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             ------CSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred             ------eCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence                  445566666544   4799999999988

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.93  E-value=1.1e-09  Score=104.51  Aligned_cols=40  Identities=28%  Similarity=0.341  Sum_probs=34.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      .++||+|||+|+|||++|+.+++.+  .|.+|+|+||....+
T Consensus         4 ~~~DVlVIG~G~AGl~AA~~a~~~~--~g~~V~lleK~~~~~   43 (311)
T d1kf6a2           4 FQADLAIVGAGGAGLRAAIAAAQAN--PNAKIALISKVYPMR   43 (311)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHC--TTCCEEEEESSCGGG
T ss_pred             eecCEEEECccHHHHHHHHHHHHhC--CCCEEEEEECCCCCC
Confidence            4689999999999999999998753  378999999987653

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.92  E-value=6.5e-09  Score=83.53  Aligned_cols=94  Identities=13%  Similarity=0.182  Sum_probs=75.0

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      +-+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+- +                               .     
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~----g~~Vtlv~~~~~il-~-------------------------------~-----   60 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRL----GIDSYIFARGNRIL-R-------------------------------K-----   60 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTT----TCEEEEECSSSSSC-T-------------------------------T-----
T ss_pred             CCEEEEECCchHHHHHHHHHHhc----cccceeeehhcccc-c-------------------------------c-----
Confidence            35799999999999999999996    99999999988550 0                               0     


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                                                       . -.++.+.+.+.+++.| ++++++++|++++.              
T Consensus        61 ---------------------------------~-d~~~~~~~~~~l~~~g-V~i~~~~~v~~i~~--------------   91 (117)
T d1onfa2          61 ---------------------------------F-DESVINVLENDMKKNN-INIVTFADVVEIKK--------------   91 (117)
T ss_dssp             ---------------------------------S-CHHHHHHHHHHHHHTT-CEEECSCCEEEEEE--------------
T ss_pred             ---------------------------------c-cHHHHHHHHHHHHhCC-CEEEECCEEEEEEE--------------
Confidence                                             0 0245577788888887 99999999999976              


Q ss_pred             cccccccCCeeEEEcCCCcEE-EeeEEEEe
Q 010200          215 ATTLFTKGHLAKLDLSDGTSL-YAKLVVGA  243 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~-~ad~vV~A  243 (515)
                           ..++.+++++++|+++ .+|.||.|
T Consensus        92 -----~~~~~~~v~~~~G~~~~~~D~Vi~A  116 (117)
T d1onfa2          92 -----VSDKNLSIHLSDGRIYEHFDHVIYC  116 (117)
T ss_dssp             -----SSTTCEEEEETTSCEEEEESEEEEC
T ss_pred             -----cCCCeEEEEECCCCEEEeCCEEEEe
Confidence                 1335688999999877 47999976

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=4e-09  Score=87.54  Aligned_cols=100  Identities=18%  Similarity=0.244  Sum_probs=77.1

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      -+|+|||||++|+=+|..|++.....|.+|+++|+.+.+..+                                      
T Consensus        38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~--------------------------------------   79 (137)
T d1m6ia2          38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGK--------------------------------------   79 (137)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTT--------------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcc--------------------------------------
Confidence            479999999999999988863100028899999998854100                                      


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                       .                +               ..++...+.+.+++.| ++++++++|.+++.               
T Consensus        80 -~----------------~---------------~~~~~~~~~~~l~~~G-V~~~~~~~V~~i~~---------------  111 (137)
T d1m6ia2          80 -I----------------L---------------PEYLSNWTMEKVRREG-VKVMPNAIVQSVGV---------------  111 (137)
T ss_dssp             -T----------------S---------------CHHHHHHHHHHHHTTT-CEEECSCCEEEEEE---------------
T ss_pred             -c----------------C---------------CHHHHHHHHHHHHhCC-cEEEeCCEEEEEEe---------------
Confidence             0                0               0234567788888888 99999999999976               


Q ss_pred             ccccccCCeeEEEcCCCcEEEeeEEEEecCC
Q 010200          216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGG  246 (515)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~  246 (515)
                           ++..+.+++++|+++.||+||.|.|.
T Consensus       112 -----~~~~~~v~l~~G~~i~aD~Vi~A~Gv  137 (137)
T d1m6ia2         112 -----SSGKLLIKLKDGRKVETDHIVAAVGL  137 (137)
T ss_dssp             -----ETTEEEEEETTSCEEEESEEEECCCE
T ss_pred             -----cCCEEEEEECCCCEEECCEEEEeecC
Confidence                 45678899999999999999999983

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.87  E-value=1e-08  Score=82.55  Aligned_cols=99  Identities=12%  Similarity=0.105  Sum_probs=75.7

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      -+|+|||||++|+-+|..|+++.- .|.+|+|+|+.+.+.                                    .   
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~-~g~~Vtli~~~~~il------------------------------------~---   58 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKA-RGGQVDLAYRGDMIL------------------------------------R---   58 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSC-TTCEEEEEESSSSSS------------------------------------T---
T ss_pred             CeEEEECCChHHHHHHHHhHhhcc-cccccceeccccccc------------------------------------c---
Confidence            579999999999999976543210 288999999987541                                    0   


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                       .                              + -.++.+.+.+.+++.| ++++++++|++++.               
T Consensus        59 -~------------------------------~-d~~~~~~~~~~l~~~G-I~v~~~~~v~~i~~---------------   90 (117)
T d1feca2          59 -G------------------------------F-DSELRKQLTEQLRANG-INVRTHENPAKVTK---------------   90 (117)
T ss_dssp             -T------------------------------S-CHHHHHHHHHHHHHTT-EEEEETCCEEEEEE---------------
T ss_pred             -c------------------------------c-cchhhHHHHHHHhhCc-EEEEcCCEEEEEEE---------------
Confidence             0                              0 0235577788888888 99999999999976               


Q ss_pred             ccccccCCeeEEEcCCCcEEEeeEEEEecCC
Q 010200          216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGG  246 (515)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~  246 (515)
                          +.+....+.+++|+++.||+||.|.|.
T Consensus        91 ----~~~g~~~v~~~~g~~i~~D~Vi~a~GR  117 (117)
T d1feca2          91 ----NADGTRHVVFESGAEADYDVVMLAIGR  117 (117)
T ss_dssp             ----CTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred             ----CCCCEEEEEECCCCEEEcCEEEEecCC
Confidence                122456788999999999999999984

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.87  E-value=9.8e-10  Score=105.98  Aligned_cols=40  Identities=20%  Similarity=0.305  Sum_probs=35.9

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      +.+++||+|||+|+|||++|+.+++.    |.+|+|+||.+..+
T Consensus         4 ~~~~~DVlVVG~G~AGl~AAl~aa~~----G~~V~lleK~~~~g   43 (330)
T d1neka2           4 PVREFDAVVIGAGGAGMRAALQISQS----GQTCALLSKVFPTR   43 (330)
T ss_dssp             CEEEESCEEECCSHHHHHHHHHHHHT----TCCCEEECSSCGGG
T ss_pred             CcccCCEEEECcCHHHHHHHHHHHHc----CCeEEEEeCCCCCC
Confidence            34579999999999999999999996    99999999988764

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.85  E-value=1e-08  Score=82.45  Aligned_cols=96  Identities=16%  Similarity=0.195  Sum_probs=73.7

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      -+|+|||||+.|+-+|..|++.+. .|.+|+|+|+.+.+-                                ..+     
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~-~~~~Vtli~~~~~iL--------------------------------~~~-----   62 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKP-KDGQVTLCYRGEMIL--------------------------------RGF-----   62 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCC-TTCEEEEEESSSSSS--------------------------------TTS-----
T ss_pred             CeEEEECCcHHHHHHHHHhhhccc-CCcEEEEEeccchhh--------------------------------ccc-----
Confidence            579999999999999987665421 367899999987550                                000     


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                                                        -..+.+.+.+.+++.| +++++++++++++.               
T Consensus        63 ----------------------------------d~~~~~~l~~~l~~~G-V~v~~~~~v~~ie~---------------   92 (117)
T d1aoga2          63 ----------------------------------DHTLREELTKQLTANG-IQILTKENPAKVEL---------------   92 (117)
T ss_dssp             ----------------------------------CHHHHHHHHHHHHHTT-CEEEESCCEEEEEE---------------
T ss_pred             ----------------------------------chHHHHHHHHHHHhcC-cEEEcCCEEEEEEE---------------
Confidence                                              0235567788888888 99999999999975               


Q ss_pred             ccccccCCeeEEEcCCCcEEEeeEEEEe
Q 010200          216 TTLFTKGHLAKLDLSDGTSLYAKLVVGA  243 (515)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~A  243 (515)
                          ..+..+.+++++|+++.||.||.|
T Consensus        93 ----~~~~~~~v~~~~G~~i~~D~Vi~A  116 (117)
T d1aoga2          93 ----NADGSKSVTFESGKKMDFDLVMMA  116 (117)
T ss_dssp             ----CTTSCEEEEETTSCEEEESEEEEC
T ss_pred             ----cCCCeEEEEECCCcEEEeCEEEEe
Confidence                123457899999999999999976

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.84  E-value=2.7e-09  Score=85.70  Aligned_cols=92  Identities=15%  Similarity=0.194  Sum_probs=69.7

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      -+|+|||||++|+-+|..|++.    |.+|+|+|+.+.+.                                    .   
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~----g~~Vtlve~~~~il------------------------------------~---   58 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKL----GAQVSVVEARERIL------------------------------------P---   58 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHH----TCEEEEECSSSSSS------------------------------------T---
T ss_pred             CeEEEECCCHHHHHHHHHHhhc----ccceEEEeeecccc------------------------------------c---
Confidence            5799999999999999999996    99999999988540                                    0   


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                       .                              .+ .++.+.+.+.+++.| ++++++++|++++.               
T Consensus        59 -~------------------------------~d-~~~~~~l~~~l~~~g-V~i~~~~~V~~i~~---------------   90 (115)
T d1lvla2          59 -T------------------------------YD-SELTAPVAESLKKLG-IALHLGHSVEGYEN---------------   90 (115)
T ss_dssp             -T------------------------------SC-HHHHHHHHHHHHHHT-CEEETTCEEEEEET---------------
T ss_pred             -c------------------------------cc-chhHHHHHHHHHhhc-ceEEcCcEEEEEcC---------------
Confidence             0                              00 234566777777778 99999999999853               


Q ss_pred             ccccccCCeeEEEcCC--CcEEEeeEEEEecC
Q 010200          216 TTLFTKGHLAKLDLSD--GTSLYAKLVVGADG  245 (515)
Q Consensus       216 ~~~~~~~~~~~v~~~~--g~~~~ad~vV~AdG  245 (515)
                             ........+  ++++.||.||.|.|
T Consensus        91 -------~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          91 -------GCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             -------TEEEEECSSSCCCEECCSCEEECCC
T ss_pred             -------CeEEEEEcCCCeEEEEcCEEEEecC
Confidence                   223333333  34799999999998

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.82  E-value=4.3e-09  Score=92.94  Aligned_cols=117  Identities=13%  Similarity=0.016  Sum_probs=77.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      .++||+||||||+|+.+|+.|+|.    |++|+|+|+........          .+                  .+.. 
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~----g~~v~vie~~~~~~~~~----------~~------------------~~~~-   50 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARA----ELKPLLFEGWMANDIAP----------GG------------------QLTT-   50 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT----TCCCEEECCSSBTTBCT----------TC------------------GGGG-
T ss_pred             ccceEEEECCCHHHHHHHHHHHHc----CCcEEEEEeeccccccc----------cc------------------cccc-
Confidence            468999999999999999999996    99999999877541000          00                  0000 


Q ss_pred             hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (515)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~  213 (515)
                          ..   ....            ....+  ..+...++...+.+++.+.+ +++..+ .|.+++.             
T Consensus        51 ----~~---~~~~------------~~~~~--~~~~~~el~~~~~~q~~~~g-~~i~~~-~V~~~~~-------------   94 (192)
T d1vdca1          51 ----TT---DVEN------------FPGFP--EGILGVELTDKFRKQSERFG-TTIFTE-TVTKVDF-------------   94 (192)
T ss_dssp             ----CS---EECC------------STTCT--TCEEHHHHHHHHHHHHHHTT-CEEECC-CCCEEEC-------------
T ss_pred             ----ch---hhhc------------ccccc--ccccchHHHHHHHHHHHhhc-ceeeee-eEEeccc-------------
Confidence                00   0000            00000  12456788888888888887 888866 6877765             


Q ss_pred             CcccccccCCeeEEEcCCCcEEEeeEEEEecCCC
Q 010200          214 SATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGK  247 (515)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~  247 (515)
                             ......+... ..++.+|.++.+.|..
T Consensus        95 -------~~~~~~v~~~-~~~~~~~~~~~a~g~~  120 (192)
T d1vdca1          95 -------SSKPFKLFTD-SKAILADAVILAIGAV  120 (192)
T ss_dssp             -------SSSSEEEECS-SEEEEEEEEEECCCEE
T ss_pred             -------ccCcEEeccc-ceeeeeeeEEEEeeee
Confidence                   3344555544 4468999999999973

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.80  E-value=9.4e-09  Score=97.70  Aligned_cols=38  Identities=32%  Similarity=0.626  Sum_probs=33.7

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      .+++||||||+|+|||++|+.+++.    | +|+|+||.+..+
T Consensus         5 ~~~~DVvVVG~G~AGl~AA~~a~~~----g-~V~llEK~~~~g   42 (305)
T d1chua2           5 EHSCDVLIIGSGAAGLSLALRLADQ----H-QVIVLSKGPVTE   42 (305)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTTT----S-CEEEECSSCTTC
T ss_pred             cccCCEEEECccHHHHHHHHHhhcC----C-CEEEEECCCCCC
Confidence            3579999999999999999999884    7 999999998663

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.80  E-value=1.5e-08  Score=82.28  Aligned_cols=92  Identities=22%  Similarity=0.221  Sum_probs=70.7

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      -+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+-..                               .      
T Consensus        31 k~vvViGgG~iG~E~A~~l~~~----g~~Vtlie~~~~~l~~-------------------------------~------   69 (123)
T d1nhpa2          31 NNVVVIGSGYIGIEAAEAFAKA----GKKVTVIDILDRPLGV-------------------------------Y------   69 (123)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSSSTTTT-------------------------------T------
T ss_pred             CEEEEECChHHHHHHHHHhhcc----ceEEEEEEecCccccc-------------------------------c------
Confidence            5799999999999999999996    9999999998754000                               0      


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                                                      + -.++.+.+.+.+++.| +++++++++++++.               
T Consensus        70 --------------------------------~-d~~~~~~~~~~l~~~g-v~~~~~~~v~~i~~---------------  100 (123)
T d1nhpa2          70 --------------------------------L-DKEFTDVLTEEMEANN-ITIATGETVERYEG---------------  100 (123)
T ss_dssp             --------------------------------C-CHHHHHHHHHHHHTTT-EEEEESCCEEEEEC---------------
T ss_pred             --------------------------------c-chhhHHHHHHHhhcCC-eEEEeCceEEEEEc---------------
Confidence                                            0 0234566777888887 99999999999964               


Q ss_pred             ccccccCCeeEEEcCCCcEEEeeEEEEe
Q 010200          216 TTLFTKGHLAKLDLSDGTSLYAKLVVGA  243 (515)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~A  243 (515)
                           + +.+.....+|+++.||+||.|
T Consensus       101 -----~-~~~~~v~~dg~~i~~D~vi~a  122 (123)
T d1nhpa2         101 -----D-GRVQKVVTDKNAYDADLVVVA  122 (123)
T ss_dssp             -----S-SBCCEEEESSCEEECSEEEEC
T ss_pred             -----C-CCEEEEEeCCCEEECCEEEEE
Confidence                 2 233333568889999999976

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.78  E-value=2.3e-08  Score=80.95  Aligned_cols=95  Identities=13%  Similarity=0.314  Sum_probs=72.5

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      +-+++|||||+.|+=+|..|++.    |.+|+|+|+.+.+-                             .         
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~l----G~~Vtii~~~~~~l-----------------------------~---------   60 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRL----GSKVTVVEFQPQIG-----------------------------A---------   60 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSSS-----------------------------S---------
T ss_pred             CCeEEEECCCchHHHHHHHHHhh----CcceeEEEeccccc-----------------------------h---------
Confidence            35799999999999999999997    99999999988650                             0         


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                        .                              . -.++.+.+.+.+++.| ++++++++|++++.              
T Consensus        61 --~------------------------------~-d~ei~~~l~~~l~~~G-V~i~~~~~v~~v~~--------------   92 (122)
T d1v59a2          61 --S------------------------------M-DGEVAKATQKFLKKQG-LDFKLSTKVISAKR--------------   92 (122)
T ss_dssp             --S------------------------------S-CHHHHHHHHHHHHHTT-CEEECSEEEEEEEE--------------
T ss_pred             --h------------------------------h-hhhhHHHHHHHHHhcc-ceEEeCCEEEEEEE--------------
Confidence              0                              0 0245577778888888 99999999999976              


Q ss_pred             cccccccCCeeEEEcCCC-----cEEEeeEEEEe
Q 010200          215 ATTLFTKGHLAKLDLSDG-----TSLYAKLVVGA  243 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g-----~~~~ad~vV~A  243 (515)
                          .+++..+++.+.++     +++.+|+|+.|
T Consensus        93 ----~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          93 ----NDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             ----ETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             ----eCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence                11234566665443     37999999876

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.76  E-value=2.3e-08  Score=80.35  Aligned_cols=92  Identities=16%  Similarity=0.289  Sum_probs=70.6

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      +-+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+.                             .         
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~----G~~Vtlve~~~~il-----------------------------~---------   59 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANF----GTKVTILEGAGEIL-----------------------------S---------   59 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSSSSS-----------------------------T---------
T ss_pred             CCeEEEECCCccceeeeeeeccc----ccEEEEEEecceec-----------------------------c---------
Confidence            35799999999999999999997    99999999988540                             0         


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                        .+                              + .++.+.+.+.+++.| ++++++++|++++.              
T Consensus        60 --~~------------------------------d-~~~~~~l~~~l~~~G-I~i~~~~~v~~i~~--------------   91 (117)
T d1ebda2          60 --GF------------------------------E-KQMAAIIKKRLKKKG-VEVVTNALAKGAEE--------------   91 (117)
T ss_dssp             --TS------------------------------C-HHHHHHHHHHHHHTT-CEEEESEEEEEEEE--------------
T ss_pred             --cc------------------------------c-chhHHHHHHHHHhcC-CEEEcCCEEEEEEE--------------
Confidence              00                              0 235566778888888 99999999999976              


Q ss_pred             cccccccCCeeEEEcC-CC--cEEEeeEEEE
Q 010200          215 ATTLFTKGHLAKLDLS-DG--TSLYAKLVVG  242 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~-~g--~~~~ad~vV~  242 (515)
                            ..+.+.+.+. +|  +++.+|.||.
T Consensus        92 ------~~~~~~v~~~~~g~~~~i~~D~Vlv  116 (117)
T d1ebda2          92 ------REDGVTVTYEANGETKTIDADYVLV  116 (117)
T ss_dssp             ------ETTEEEEEEEETTEEEEEEESEEEE
T ss_pred             ------cCCEEEEEEEeCCCEEEEEeEEEEE
Confidence                  3344555553 33  4799999985

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.72  E-value=1.4e-08  Score=98.62  Aligned_cols=42  Identities=21%  Similarity=0.343  Sum_probs=34.2

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      .++||||||+|+|||++|+.|++.+-.+|++|+|+||.+..+
T Consensus        20 ~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~g   61 (356)
T d1jnra2          20 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVER   61 (356)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTT
T ss_pred             EecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCC
Confidence            468999999999999999999752111499999999987663

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.70  E-value=3.5e-08  Score=80.06  Aligned_cols=96  Identities=10%  Similarity=0.171  Sum_probs=74.5

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      +-+++|||||+.|+=+|..+++.    |.+|+|+|+.+.+-                             .   .+    
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~----G~~Vtive~~~~il-----------------------------~---~~----   65 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTL----GSRLDVVEMMDGLM-----------------------------Q---GA----   65 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHH----TCEEEEECSSSSSS-----------------------------T---TS----
T ss_pred             CCeEEEECCCHHHHHHHHHhhcC----CCEEEEEEeecccc-----------------------------c---cc----
Confidence            45799999999999999999997    99999999988551                             0   00    


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                                                         -.++.+.|.+.+++.| ++++.++++++++.              
T Consensus        66 -----------------------------------d~~~~~~l~~~l~~~g-v~~~~~~~v~~v~~--------------   95 (125)
T d1ojta2          66 -----------------------------------DRDLVKVWQKQNEYRF-DNIMVNTKTVAVEP--------------   95 (125)
T ss_dssp             -----------------------------------CHHHHHHHHHHHGGGE-EEEECSCEEEEEEE--------------
T ss_pred             -----------------------------------hhhHHHHHHHHHHHcC-cccccCcEEEEEEE--------------
Confidence                                               0245577888888888 99999999999986              


Q ss_pred             cccccccCCeeEEEc--CCC--cEEEeeEEEEecCC
Q 010200          215 ATTLFTKGHLAKLDL--SDG--TSLYAKLVVGADGG  246 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~--~~g--~~~~ad~vV~AdG~  246 (515)
                            ..+++.+.+  .+|  +++.+|+|+.|.|.
T Consensus        96 ------~~~g~~v~~~~~~g~~~~i~~D~vl~A~GR  125 (125)
T d1ojta2          96 ------KEDGVYVTFEGANAPKEPQRYDAVLVAAGR  125 (125)
T ss_dssp             ------ETTEEEEEEESSSCCSSCEEESCEEECCCE
T ss_pred             ------cCCcEEEEEEeCCCCeEEEEcCEEEEecCC
Confidence                  333444544  444  37999999999984

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.70  E-value=2.3e-08  Score=80.98  Aligned_cols=89  Identities=21%  Similarity=0.276  Sum_probs=69.0

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      .+|+|||||++|+-+|..|++.    |.+|+|+|+.+.+.                .+.                     
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~----g~~Vtlv~~~~~l~----------------~~d---------------------   71 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEA----GYHVKLIHRGAMFL----------------GLD---------------------   71 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHT----TCEEEEECSSSCCT----------------TCC---------------------
T ss_pred             CcEEEECCcHHHHHHHHHhhcc----cceEEEEecccccc----------------CCC---------------------
Confidence            4799999999999999999996    99999999887440                000                     


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                                                         .++.+.+.+.+++.| +++++++++++++.               
T Consensus        72 -----------------------------------~~~~~~~~~~l~~~G-V~~~~~~~v~~~~~---------------  100 (122)
T d1xhca2          72 -----------------------------------EELSNMIKDMLEETG-VKFFLNSELLEANE---------------  100 (122)
T ss_dssp             -----------------------------------HHHHHHHHHHHHHTT-EEEECSCCEEEECS---------------
T ss_pred             -----------------------------------HHHHHHHHHHHHHCC-cEEEeCCEEEEEeC---------------
Confidence                                               123355666777777 99999999998853               


Q ss_pred             ccccccCCeeEEEcCCCcEEEeeEEEEecCC
Q 010200          216 TTLFTKGHLAKLDLSDGTSLYAKLVVGADGG  246 (515)
Q Consensus       216 ~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~  246 (515)
                             +.+   +.+++++.+|+||.|.|.
T Consensus       101 -------~~v---~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2         101 -------EGV---LTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             -------SEE---EETTEEEECSCEEEECCE
T ss_pred             -------CEE---EeCCCEEECCEEEEEEEe
Confidence                   222   346778999999999984

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.70  E-value=1.5e-09  Score=98.06  Aligned_cols=37  Identities=32%  Similarity=0.510  Sum_probs=34.6

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ++|||+||||||||+++|+.+++.    |.+|+|+|+....
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~----G~kV~vie~~~~~   38 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQL----GFKTTCIEKRGAL   38 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHH----TCCEEEEECSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC----CCcEEEEEecCCC
Confidence            579999999999999999999997    9999999998766

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=3.9e-08  Score=86.36  Aligned_cols=112  Identities=13%  Similarity=0.202  Sum_probs=74.9

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhh
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH  133 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~  133 (515)
                      +..||+||||||+||.+|+.|+|.    |++|+|+|+....+  .                              .....
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~----g~~v~iie~~~~~g--~------------------------------~~~~~   47 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARA----NLQPVLITGMEKGG--Q------------------------------LTTTT   47 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTT----TCCCEEECCSSTTG--G------------------------------GGGCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHc----CCceEEEEeecccc--c------------------------------ccccc
Confidence            457999999999999999999997    99999999876431  0                              00000


Q ss_pred             hccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCC
Q 010200          134 RHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTP  213 (515)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~  213 (515)
                         .+..          ...++          -.+...++...+.+.+.+.+ +.+..+ +|+.+..             
T Consensus        48 ---~i~~----------~~~~~----------~~~~~~~~~~~~~~~~~~~~-~~~~~~-~V~~~~~-------------   89 (190)
T d1trba1          48 ---EVEN----------WPGDP----------NDLTGPLLMERMHEHATKFE-TEIIFD-HINKVDL-------------   89 (190)
T ss_dssp             ---BCCC----------STTCC----------SSCBHHHHHHHHHHHHHHTT-CEEECC-CEEEEEC-------------
T ss_pred             ---hhhh----------hhccc----------cccchHHHHHHHHHHHHhcC-cEEecc-eeEEEec-------------
Confidence               0000          00000          01345667777888888887 777765 6888765             


Q ss_pred             CcccccccCCeeEEEcCCCcEEEeeEEEEecCCC
Q 010200          214 SATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGK  247 (515)
Q Consensus       214 ~~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~  247 (515)
                             .....+++..+ .++.++.+|.+.|..
T Consensus        90 -------~~~~~~v~~~~-~~~~~~~viva~G~~  115 (190)
T d1trba1          90 -------QNRPFRLNGDN-GEYTCDALIIATGAS  115 (190)
T ss_dssp             -------SSSSEEEEESS-CEEEEEEEEECCCEE
T ss_pred             -------CCCcEEEEEee-eeEeeeeeeeeccee
Confidence                   33445666544 468999999999963

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.65  E-value=5.7e-08  Score=78.51  Aligned_cols=98  Identities=14%  Similarity=0.184  Sum_probs=70.8

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      -.|+|||||+.|+=+|..|++.    |.+|+++|+.+.+. .              .+                      
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~----g~~vt~i~~~~~~l-~--------------~~----------------------   61 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNAT----GRRTVMLVRTEPLK-L--------------IK----------------------   61 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSCTTT-T--------------CC----------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhc----chhheEeeccchhh-c--------------cc----------------------
Confidence            5799999999999999999996    99999999987551 0              00                      


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                                                        -..+.+.+.+.+++.| +++++++++++++.           ++++
T Consensus        62 ----------------------------------d~~~~~~~~~~l~~~g-I~v~~~~~v~~i~~-----------~~~~   95 (121)
T d1mo9a2          62 ----------------------------------DNETRAYVLDRMKEQG-MEIISGSNVTRIEE-----------DANG   95 (121)
T ss_dssp             ----------------------------------SHHHHHHHHHHHHHTT-CEEESSCEEEEEEE-----------CTTS
T ss_pred             ----------------------------------ccchhhhhhhhhhccc-cEEEcCCEEEEEEe-----------cCCc
Confidence                                              0123456677777777 99999999999976           1111


Q ss_pred             ccccccCCee-EEEcCCCcEEEeeEEEEecC
Q 010200          216 TTLFTKGHLA-KLDLSDGTSLYAKLVVGADG  245 (515)
Q Consensus       216 ~~~~~~~~~~-~v~~~~g~~~~ad~vV~AdG  245 (515)
                           ....+ .....+++++.||+||.|.|
T Consensus        96 -----~~~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          96 -----RVQAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             -----BEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             -----eEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence                 10111 22334456899999999987

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=8.1e-08  Score=78.02  Aligned_cols=35  Identities=14%  Similarity=0.300  Sum_probs=32.3

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      -+|+|||||+.|+-+|..|++.    |.+|+|+|+.+.+
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~----G~~Vtlv~~~~~~   57 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSAL----GSKTSLMIRHDKV   57 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcC----CcEEEEEeecccc
Confidence            4799999999999999999997    9999999998854

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.62  E-value=2.1e-07  Score=80.86  Aligned_cols=116  Identities=20%  Similarity=0.273  Sum_probs=75.9

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      .|||+||||||+|+.+|+.|+|.    |.+|+|+|++...                                  .+..  
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar~----G~~v~iie~~~gg----------------------------------~~~~--   40 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSARK----GIRTGLMGERFGG----------------------------------QILD--   40 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTT----TCCEEEECSSTTG----------------------------------GGGG--
T ss_pred             CCcEEEECcCHHHHHHHHHHHHc----CCeEEEEEEecCC----------------------------------cccc--
Confidence            38999999999999999999996    9999999975311                                  0000  


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                           .......             ...   ..+.-..+...+...+++.+ .++..+..+..+..         ..   
T Consensus        41 -----~~~~~~~-------------~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------~~---   86 (184)
T d1fl2a1          41 -----TVDIENY-------------ISV---PKTEGQKLAGALKVHVDEYD-VDVIDSQSASKLIP---------AA---   86 (184)
T ss_dssp             -----CCEECCB-------------TTB---SSEEHHHHHHHHHHHHHTSC-EEEECSCCEEEEEC---------CS---
T ss_pred             -----cccceec-------------ccc---chhhhHHHHHHHHHHhhhee-ceeeccceeeeecc---------cc---
Confidence                 0000000             000   11334567777778888877 78888877877754         00   


Q ss_pred             cccccccCCeeEEEcCCCcEEEeeEEEEecCCCch
Q 010200          215 ATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR  249 (515)
Q Consensus       215 ~~~~~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~  249 (515)
                           ...........++.++.++.++.+.|....
T Consensus        87 -----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  116 (184)
T d1fl2a1          87 -----VEGGLHQIETASGAVLKARSIIVATGAKLP  116 (184)
T ss_dssp             -----STTCCEEEEETTSCEEEEEEEEECCCEEEE
T ss_pred             -----cccceeeeeeecceeeeccccccccccccc
Confidence                 022334445566668999999999996544

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=4.3e-09  Score=94.56  Aligned_cols=40  Identities=25%  Similarity=0.412  Sum_probs=33.2

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      +.++++||||||++|+.+|..|++.+  ...+|+++++.+.+
T Consensus         2 p~~~~~vIvG~G~aG~~~A~~Lr~~~--~~~~I~li~~e~~~   41 (213)
T d1m6ia1           2 PSHVPFLLIGGGTAAFAAARSIRARD--PGARVLIVSEDPEL   41 (213)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHS--TTCEEEEEESSSSC
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcC--CCCcEEEEeCCCCC
Confidence            35689999999999999999998863  24579999987755

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.57  E-value=3.4e-07  Score=73.82  Aligned_cols=97  Identities=20%  Similarity=0.100  Sum_probs=71.1

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhhc
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRH  135 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~  135 (515)
                      -+++|||||+.|+=+|..|++.    |.+|+|+++...++                                        
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~l----G~~Vtii~~~~~l~----------------------------------------   56 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGI----GLDVTVMVRSILLR----------------------------------------   56 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT----TCCEEEEESSSSST----------------------------------------
T ss_pred             CeEEEECCCccHHHHHHHHhhc----CCeEEEEEechhhc----------------------------------------
Confidence            4799999999999999999997    99999999754220                                        


Q ss_pred             cccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCc
Q 010200          136 AYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSA  215 (515)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~  215 (515)
                       .+                               -.++.+.+.+.+++.| ++|+++++|++++.         .++.  
T Consensus        57 -~~-------------------------------D~~~~~~l~~~l~~~G-v~i~~~~~v~~~~~---------~~~~--   92 (122)
T d1h6va2          57 -GF-------------------------------DQDMANKIGEHMEEHG-IKFIRQFVPTKIEQ---------IEAG--   92 (122)
T ss_dssp             -TS-------------------------------CHHHHHHHHHHHHHTT-EEEEESCEEEEEEE---------EECS--
T ss_pred             -cC-------------------------------CHHHHHHHHHHHHHCC-CEEEECCEEEEEEE---------ecCC--
Confidence             00                               0245577888888888 99999999999975         1111  


Q ss_pred             ccccccCCeeEEEcCCC---c--EEEeeEEEEecC
Q 010200          216 TTLFTKGHLAKLDLSDG---T--SLYAKLVVGADG  245 (515)
Q Consensus       216 ~~~~~~~~~~~v~~~~g---~--~~~ad~vV~AdG  245 (515)
                           ....+.+.+..+   +  ...+|.|+.|.|
T Consensus        93 -----~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          93 -----TPGRLKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             -----TTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             -----CccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence                 224455554332   2  467899999987

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.57  E-value=9.5e-08  Score=77.33  Aligned_cols=94  Identities=12%  Similarity=0.269  Sum_probs=70.6

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCcEEEeCHhHHHHHHHcCCchhhhhhh
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHR  134 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~  134 (515)
                      +-+++|||||..|+=+|..|++.    |.+|+|+|+.+.+. .                               .     
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~----G~~Vtvi~~~~~~l-~-------------------------------~-----   63 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRI----GSEVTVVEFASEIV-P-------------------------------T-----   63 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHH----TCEEEEECSSSSSS-T-------------------------------T-----
T ss_pred             CCeEEEEccchHHHHHHHHHHhc----CCeEEEEEEccccC-c-------------------------------h-----
Confidence            35799999999999999999997    99999999998651 0                               0     


Q ss_pred             ccccceEEEEeCCCccceeeecccCCCCcceEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCC
Q 010200          135 HAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPS  214 (515)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~  214 (515)
                                                       . -.++...|.+.+++.| ++|+.|+++.+++.              
T Consensus        64 ---------------------------------~-d~~~~~~l~~~l~~~G-I~i~~~~~v~~i~~--------------   94 (123)
T d1dxla2          64 ---------------------------------M-DAEIRKQFQRSLEKQG-MKFKLKTKVVGVDT--------------   94 (123)
T ss_dssp             ---------------------------------S-CHHHHHHHHHHHHHSS-CCEECSEEEEEEEC--------------
T ss_pred             ---------------------------------h-hhcchhhhhhhhhccc-ceEEcCCceEEEEE--------------
Confidence                                             0 0235566778888888 99999999999975              


Q ss_pred             cccccccCCee--EEEcC-CCc--EEEeeEEEEec
Q 010200          215 ATTLFTKGHLA--KLDLS-DGT--SLYAKLVVGAD  244 (515)
Q Consensus       215 ~~~~~~~~~~~--~v~~~-~g~--~~~ad~vV~Ad  244 (515)
                            .++.+  ++... +|+  +++||+|+.|.
T Consensus        95 ------~~~~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          95 ------SGDGVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             ------SSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             ------ccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence                  22334  44443 333  68999998763

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.50  E-value=1.9e-08  Score=91.30  Aligned_cols=39  Identities=26%  Similarity=0.443  Sum_probs=35.7

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      |.++|||+||||||||+++|+.|++.    |.+|+|||+.+..
T Consensus         2 m~~~yDviVIG~GpAGl~aA~~aa~~----G~kV~lie~~~~~   40 (233)
T d1v59a1           2 INKSHDVVIIGGGPAGYVAAIKAAQL----GFNTACVEKRGKL   40 (233)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHT----TCCEEEEESSSSS
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHHC----CCcEEEEEecCCc
Confidence            45689999999999999999999997    9999999998765

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.49  E-value=3.2e-08  Score=89.29  Aligned_cols=37  Identities=30%  Similarity=0.455  Sum_probs=34.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ++|||+|||||||||++|+.|+|.    |++|+|+|+....
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~----G~~V~viE~~~~~   38 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQL----GLKTALIEKYKGK   38 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHH----TCCEEEEECCBCT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHC----CCeEEEEecccCC
Confidence            689999999999999999999997    9999999998755

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=5.6e-08  Score=93.48  Aligned_cols=41  Identities=24%  Similarity=0.493  Sum_probs=36.8

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS   97 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~   97 (515)
                      .++.+|||||||++||++|+.|+++    |++|+|||+++.++.+
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~----G~~V~VlEa~~r~GGr   43 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSF----GMDVTLLEARDRVGGR   43 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHT----TCEEEEECSSSSSBTT
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhC----CCCEEEEeCCCCCccc
Confidence            3567899999999999999999996    9999999999988643

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.39  E-value=3.7e-08  Score=89.85  Aligned_cols=52  Identities=12%  Similarity=0.083  Sum_probs=39.2

Q ss_pred             eEEechHHHHHHHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCcEEEeeEEEEec
Q 010200          165 GCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGAD  244 (515)
Q Consensus       165 ~~~i~r~~l~~~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~ad~vV~Ad  244 (515)
                      ...++...+..+|.+.+.+.| ++|+.+ +|++++.                               -....+|+||.|+
T Consensus       136 ~~~id~~~~~~~L~~~~~~~G-~~~~~~-~v~~l~~-------------------------------~~~~~~d~vVnct  182 (246)
T d1kifa1         136 SLILEGRKYLQWLTERLTERG-VKFFLR-KVESFEE-------------------------------VARGGADVIINCT  182 (246)
T ss_dssp             EEEECHHHHHHHHHHHHHHTT-CEEEEC-CCCCHHH-------------------------------HHHTTCSEEEECC
T ss_pred             ceEEcHHHHHHHHHHHHHHCC-CEEEEe-EeCCHHH-------------------------------hccCCCCEEEECC
Confidence            367889999999999999998 887755 5665532                               0113478999999


Q ss_pred             CCCch
Q 010200          245 GGKSR  249 (515)
Q Consensus       245 G~~S~  249 (515)
                      |.++.
T Consensus       183 G~~a~  187 (246)
T d1kifa1         183 GVWAG  187 (246)
T ss_dssp             GGGHH
T ss_pred             ccccc
Confidence            99884

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.38  E-value=8.5e-08  Score=85.96  Aligned_cols=35  Identities=29%  Similarity=0.451  Sum_probs=32.6

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ++|||+||||||+|+++|+.|+++    |.+|+|+|++.
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~----G~kV~iiE~~~   35 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMY----GQKCALIEAKE   35 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTT----TCCEEEEESSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC----CCEEEEEeccC
Confidence            469999999999999999999997    99999999865

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.37  E-value=9.6e-08  Score=86.44  Aligned_cols=37  Identities=41%  Similarity=0.596  Sum_probs=34.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ..|||+|||||||||++|+.|+++    |++|+|||+.+.+
T Consensus         5 ~dyDviIIG~GPaGlsaA~~aa~~----G~~V~viE~~~~~   41 (229)
T d1ojta1           5 AEYDVVVLGGGPGGYSAAFAAADE----GLKVAIVERYKTL   41 (229)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT----TCCEEEEESSSCS
T ss_pred             CccCEEEECcCHHHHHHHHHHHHC----CCeEEEEeccCCC
Confidence            469999999999999999999996    9999999998765

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.35  E-value=1e-06  Score=77.50  Aligned_cols=37  Identities=14%  Similarity=0.191  Sum_probs=32.2

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ++|+|||||++|+.+|..|++.+  ++.+|+|+||++.+
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~--~~~~V~v~~~~~~~   37 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLH--PDAEIQWYEKGDFI   37 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHC--TTSEEEEEESSSSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcC--CCCeEEEEeCCCcc
Confidence            47999999999999999999864  46799999998765

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.35  E-value=1.6e-07  Score=88.66  Aligned_cols=36  Identities=33%  Similarity=0.538  Sum_probs=33.4

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK   96 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~   96 (515)
                      +|+|||||||||++|+.|+++    |++|+|||+.+.++.
T Consensus         3 kV~IIGaG~aGL~aA~~La~~----G~~V~vlE~~~~~GG   38 (373)
T d1seza1           3 RVAVIGAGVSGLAAAYKLKIH----GLNVTVFEAEGKAGG   38 (373)
T ss_dssp             EEEEECCSHHHHHHHHHHHTT----SCEEEEECSSSSSCS
T ss_pred             EEEEECcCHHHHHHHHHHHhC----CCCEEEEeCCCCCcC
Confidence            699999999999999999996    999999999988753

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.33  E-value=1.4e-07  Score=89.00  Aligned_cols=37  Identities=30%  Similarity=0.574  Sum_probs=34.4

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK   96 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~   96 (515)
                      +||||||||++||++|..|++.    |++|+|+|+++.++.
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~----g~~V~iiEk~~~iGG   38 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKL----NKKVLVIEKRNHIGG   38 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGG----TCCEEEECSSSSSSG
T ss_pred             ccEEEECCcHHHHHHHHHHHhC----CCcEEEEECCCCccc
Confidence            7999999999999999999996    999999999998853

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.32  E-value=1.5e-07  Score=85.49  Aligned_cols=37  Identities=27%  Similarity=0.445  Sum_probs=34.1

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      -.|||+||||||||+++|+.++|.    |++|+|+|+.+..
T Consensus         2 ~dYDviVIG~GpaGl~aA~~aa~~----G~kV~viE~~~~~   38 (235)
T d1h6va1           2 YDFDLIIIGGGSGGLAAAKEAAKF----DKKVMVLDFVTPT   38 (235)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHGGG----CCCEEEECCCCCC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHC----CCeEEEEeccCCC
Confidence            369999999999999999999997    9999999998764

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.28  E-value=1.5e-07  Score=85.48  Aligned_cols=40  Identities=25%  Similarity=0.368  Sum_probs=33.5

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCC---CCCcEEEEEcCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPL---TKHLSVAIIDSNPAL   94 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~---~~G~~V~v~E~~~~~   94 (515)
                      +++|+|||||||||++|+.|+++|.   ..+++|+|||+.+.+
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~   44 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP   44 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSC
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCC
Confidence            5799999999999999999999610   023689999999987

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.26  E-value=5.9e-07  Score=81.31  Aligned_cols=36  Identities=25%  Similarity=0.397  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      .+|+||||||||+++|+.+++++. ++++|+|+|+..
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~-~~~~V~liEk~~   37 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHP-ETTQVTVIDCDG   37 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCT-TTEEEEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCC-CCCEEEEEecCC
Confidence            479999999999999998877532 468999999865

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.24  E-value=2.5e-07  Score=82.99  Aligned_cols=35  Identities=26%  Similarity=0.344  Sum_probs=32.7

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      +||||||||||+|+++|+.++|.    |.+|+|+|+...
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~----G~kV~vIEk~~~   37 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQL----GQKVTIVEKGNL   37 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHT----TCCEEEEESSCT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC----CCEEEEEecCCC
Confidence            69999999999999999999997    999999999764

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.22  E-value=1.3e-06  Score=74.43  Aligned_cols=33  Identities=36%  Similarity=0.584  Sum_probs=29.9

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      +|+|||||++|+-+|..|++     +.+|+|+|+.+.+
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-----~~~Vtvv~~~~~~   34 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-----TYEVTVIDKEPVP   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-----TSEEEEECSSSSC
T ss_pred             eEEEECCcHHHHHHHHHHHc-----CCCEEEEeccccc
Confidence            69999999999999999987     6799999988755

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.21  E-value=3.9e-07  Score=88.50  Aligned_cols=39  Identities=33%  Similarity=0.458  Sum_probs=35.1

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      |+.+|||||||+|++|+++|..|++.    |++|+|+|++...
T Consensus         1 md~~yDviIVGsG~aG~v~A~~La~~----G~kVlvLEaG~~~   39 (379)
T d2f5va1           1 MDIKYDVVIVGSGPIGCTYARELVGA----GYKVAMFDIGEID   39 (379)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSCCC
T ss_pred             CCCcccEEEECcCHHHHHHHHHHhhC----CCeEEEEecCCCC
Confidence            45689999999999999999999996    9999999997654

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=3.3e-07  Score=82.11  Aligned_cols=35  Identities=34%  Similarity=0.535  Sum_probs=32.6

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      +||||||||||+|+++|+.+++.    |.+|+|+|+...
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~----G~kV~vIEk~~~   37 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAEL----GARAAVVESHKL   37 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHT----TCCEEEEESSCT
T ss_pred             ccCEEEECCCHHHHHHHHHHHHC----CCEEEEEeccCC
Confidence            59999999999999999999997    999999998764

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.20  E-value=4.4e-07  Score=81.93  Aligned_cols=37  Identities=24%  Similarity=0.265  Sum_probs=32.7

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      .+|+|||||||||++|..|++++  .|++|+|||+.+.+
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~--~~~~V~v~e~~~~~   38 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHH--SRAHVDIYEKQLVP   38 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHC--SSCEEEEECSSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcC--CCCeEEEEeCCCCC
Confidence            47999999999999999998753  37899999999877

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.19  E-value=3.7e-07  Score=80.10  Aligned_cols=36  Identities=19%  Similarity=0.377  Sum_probs=32.7

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPAL   94 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~~   94 (515)
                      +.+|+||||||+||++|+.|+++    |+ +|+||||.+..
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~----G~~~V~v~E~~~~~   40 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARL----GYSDITIFEKQEYV   40 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHT----TCCCEEEEESSSSC
T ss_pred             CCEEEEECChHHHHHHHHHHHHC----CCCeEEEEEecCcc
Confidence            46899999999999999999997    88 59999998866

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.17  E-value=3.7e-07  Score=81.89  Aligned_cols=36  Identities=17%  Similarity=0.358  Sum_probs=33.3

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ..++|||||||||+|+.+|+.+++.    |.+|+|+|++.
T Consensus         3 ~~~~DlvVIG~GpaGl~aA~~aa~~----G~~V~liE~~~   38 (220)
T d1lvla1           3 TIQTTLLIIGGGPGGYVAAIRAGQL----GIPTVLVEGQA   38 (220)
T ss_dssp             CEECSEEEECCSHHHHHHHHHHHHH----TCCEEEECSSC
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHC----CCcEEEEecCC
Confidence            3579999999999999999999997    99999999875

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.16  E-value=8.8e-07  Score=80.15  Aligned_cols=40  Identities=23%  Similarity=0.336  Sum_probs=36.0

Q ss_pred             CCCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ......+|+|||||||||++|..|++.    |++|+|+|+.+.+
T Consensus        45 ~~~~~k~VvIIGaGpAGl~aA~~l~~~----G~~v~l~E~~~~~   84 (233)
T d1djqa3          45 QTKNKDSVLIVGAGPSGSEAARVLMES----GYTVHLTDTAEKI   84 (233)
T ss_dssp             CCSSCCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSSST
T ss_pred             cccCCceEEEEcccHHHHHHHHHHHHh----ccceeeEeecccc
Confidence            344568999999999999999999996    9999999999977

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.14  E-value=8.6e-07  Score=84.03  Aligned_cols=38  Identities=29%  Similarity=0.468  Sum_probs=34.7

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGK   96 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~   96 (515)
                      +.+|+|||||++||++|..|++.    |++|+|+|+++.++.
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~----G~~V~viEk~~~iGG   39 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEK----GHQVHIIDQRDHIGG   39 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT----TCEEEEEESSSSSSG
T ss_pred             CCEEEEECCcHHHHHHHHHHHhC----CCCEEEEECCCCCcC
Confidence            35799999999999999999996    999999999998864

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.11  E-value=1.4e-06  Score=82.45  Aligned_cols=42  Identities=36%  Similarity=0.474  Sum_probs=35.6

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALGKS   97 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~~~   97 (515)
                      ..+||+||||||+||++|+.|++..  .|++|+|||+.+.++..
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~--~~~~~~~~~~~~~~~~~   90 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNR--PDLKVCIIESSVAPGGG   90 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHC--TTSCEEEECSSSSCCTT
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhC--CCCeEEEEEcCCCCcce
Confidence            4689999999999999999998521  39999999999887543

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.10  E-value=1.5e-06  Score=75.27  Aligned_cols=35  Identities=17%  Similarity=0.251  Sum_probs=28.6

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      +.+|+|||||++|+-+|..|++.    |.++.|++....
T Consensus         3 ~a~VvIIGgG~~G~e~A~~l~~~----g~~v~i~~~~~~   37 (183)
T d1d7ya1           3 KAPVVVLGAGLASVSFVAELRQA----GYQGLITVVGDE   37 (183)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHH----TCCSCEEEEESS
T ss_pred             CCCEEEECccHHHHHHHHHHHhc----CCceEEEEEecc
Confidence            45699999999999999999996    777766665443

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=98.06  E-value=7e-06  Score=70.44  Aligned_cols=36  Identities=31%  Similarity=0.448  Sum_probs=31.1

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      +|||||||++|+.+|..|++.+  +..+|+|+|+++..
T Consensus         4 rivIvGgG~~G~e~A~~l~~~~--~~~~Vtlie~~~~~   39 (186)
T d1fcda1           4 KVVVVGGGTGGATAAKYIKLAD--PSIEVTLIEPNTDY   39 (186)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHC--TTSEEEEECSCSCE
T ss_pred             cEEEECccHHHHHHHHHHHHcC--CCCcEEEEECCCcc
Confidence            7999999999999999999963  24689999998744

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.03  E-value=1.3e-06  Score=80.32  Aligned_cols=33  Identities=39%  Similarity=0.622  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      |||+||||||+|+++|+.+++.    |.+|+|+|+..
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~----G~~V~liE~~~   34 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARH----NAKVALVEKSR   34 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT----TCCEEEEESSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHC----CCeEEEEecCC
Confidence            8999999999999999999996    99999999865

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.01  E-value=1.7e-06  Score=78.02  Aligned_cols=37  Identities=30%  Similarity=0.469  Sum_probs=31.8

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      +.|||+||||||||+++|+.+++.+   +.+|+|+|+...
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g---~k~V~iie~~~~   38 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLY---KKRVAVIDVQMV   38 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTS---CCCEEEEESCSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcC---CCEEEEEEeecc
Confidence            5799999999999999999999972   347999998654

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.97  E-value=1.4e-06  Score=79.12  Aligned_cols=37  Identities=35%  Similarity=0.548  Sum_probs=32.8

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~~   94 (515)
                      ++||||||||||||+++|+.+++.    |. +|+|+|+....
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~----g~k~V~vie~~~~~   39 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASL----HKKRVAVIDLQKHH   39 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHH----HCCCEEEEESCSSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHc----CCCEEEEEEEeccC
Confidence            679999999999999999999996    64 69999998754

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.91  E-value=4.4e-06  Score=76.76  Aligned_cols=41  Identities=32%  Similarity=0.457  Sum_probs=36.9

Q ss_pred             CCCCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           50 TNNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        50 ~~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ...++.||||||||||+|+.+|+.|++.    |.+|+|+|+.+..
T Consensus        37 ~~~~k~yDvvVIGgG~aG~~aA~~~a~~----G~kv~vve~~~~l   77 (261)
T d1mo9a1          37 ENDPREYDAIFIGGGAAGRFGSAYLRAM----GGRQLIVDRWPFL   77 (261)
T ss_dssp             TTCCSCBSEEEECCSHHHHHHHHHHHHT----TCCEEEEESSSSS
T ss_pred             CCCCccCCEEEECCCHHHHHHHHHHHHC----CCeEEEEeccCcc
Confidence            3455789999999999999999999997    8999999998876

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=97.85  E-value=4.3e-06  Score=80.98  Aligned_cols=36  Identities=22%  Similarity=0.363  Sum_probs=33.0

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ..++||||||+|++|+.+|..|+++    |++|+|+|++.
T Consensus         5 ~~~~dvIVVGsG~aG~v~A~rLaea----G~~VlvLEaG~   40 (370)
T d3coxa1           5 GDRVPALVIGSGYGGAVAALRLTQA----GIPTQIVEMGR   40 (370)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHT----TCCEEEECSSC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHC----CCeEEEEeCCC
Confidence            3579999999999999999999996    99999999964

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=97.77  E-value=6.8e-06  Score=79.30  Aligned_cols=34  Identities=26%  Similarity=0.406  Sum_probs=32.1

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      +||+||||+|++|+.+|..|++.    |.+|+|||++.
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~----g~~VlvLEaG~   35 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEA----GKKVLLLERGG   35 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT----TCCEEEECSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHhhC----CCeEEEEEccC
Confidence            69999999999999999999996    89999999985

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=97.73  E-value=8.5e-06  Score=79.36  Aligned_cols=37  Identities=30%  Similarity=0.538  Sum_probs=33.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ++||+||||||.+|+.+|..|++.   ++++|+|||+++.
T Consensus        16 ~tyD~IIVGsG~aG~vlA~rLse~---~~~~VLvLEaG~~   52 (385)
T d1cf3a1          16 RTVDYIIAGGGLTGLTTAARLTEN---PNISVLVIESGSY   52 (385)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTS---TTCCEEEEESSCC
T ss_pred             CeEEEEEECcCHHHHHHHHHHHHC---CCCeEEEECCCCC
Confidence            569999999999999999999987   3689999999864

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=97.72  E-value=8.2e-06  Score=78.77  Aligned_cols=34  Identities=15%  Similarity=0.208  Sum_probs=31.5

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      .||||||+|++|+.+|..|+++    |++|+|||++..
T Consensus         3 v~VIVVGsG~aG~v~A~rLaea----G~~VlvLEaG~~   36 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEA----GVQTLMLEMGQL   36 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT----TCCEEEEESSCC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHC----cCeEEEEecCCC
Confidence            6999999999999999999996    999999999743

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.70  E-value=0.00014  Score=60.57  Aligned_cols=35  Identities=20%  Similarity=0.167  Sum_probs=30.4

Q ss_pred             ccEEEE--CCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           56 YDVAVV--GGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIV--GgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      -.|+||  |||..|+.+|..|++.    |.+|+|+|+.+.+
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~----G~~Vtlv~~~~~~   76 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATA----GHEVTIVSGVHLA   76 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHT----TCEEEEEESSCTT
T ss_pred             CceEEEecCCChHHHHHHHHHHHc----CCeEEEEecCCcc
Confidence            356665  9999999999999996    9999999998754

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=97.67  E-value=1.9e-05  Score=76.88  Aligned_cols=38  Identities=26%  Similarity=0.535  Sum_probs=33.7

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ++||+||||||.+|+.+|..|++.   .+++|+|||+++..
T Consensus        23 ~tyD~IIVGsG~aG~vlA~rLae~---~~~~VLlLEaG~~~   60 (391)
T d1gpea1          23 KTYDYIIAGGGLTGLTVAAKLTEN---PKIKVLVIEKGFYE   60 (391)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTS---TTCCEEEEESSCCC
T ss_pred             CeeeEEEECcCHHHHHHHHHHHHC---CCCeEEEEcCCCCC
Confidence            569999999999999999999997   24899999999743

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.67  E-value=1.5e-05  Score=68.62  Aligned_cols=35  Identities=26%  Similarity=0.301  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      -+|+|||||++|+-+|..|++.    |.+|+|++..+.+
T Consensus         4 ~~VvIIGgG~~G~e~A~~l~~~----g~~v~v~~~~~~~   38 (185)
T d1q1ra1           4 DNVVIVGTGLAGVEVAFGLRAS----GWEGNIRLVGDAT   38 (185)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCCSEEEEECSCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHc----CCceEEEEecCcc
Confidence            4799999999999999999997    8888888777654

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=97.59  E-value=1.2e-05  Score=77.18  Aligned_cols=39  Identities=28%  Similarity=0.560  Sum_probs=33.6

Q ss_pred             CCCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           51 NNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        51 ~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ....+||+||||||+||+.+|..|++     .++|+|||++..+
T Consensus        22 ~~~~~YD~IIVGsG~aG~vlA~rLae-----~~kVLvLEaG~~~   60 (351)
T d1ju2a1          22 ELEGSYDYVIVGGGTSGCPLAATLSE-----KYKVLVLERGSLP   60 (351)
T ss_dssp             CSEEEEEEEEECCSTTHHHHHHHHTT-----TSCEEEECSSBCG
T ss_pred             cccCCccEEEECccHHHHHHHHHhcC-----CCCEEEEecCCCC
Confidence            33456999999999999999999998     4899999999743

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=0.00033  Score=58.56  Aligned_cols=47  Identities=15%  Similarity=0.010  Sum_probs=34.4

Q ss_pred             HHHHHHhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccccCCeeEEEcCCCc-EEEeeEEEEecC
Q 010200          176 SLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT-SLYAKLVVGADG  245 (515)
Q Consensus       176 ~L~~~~~~~g~v~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~ad~vV~AdG  245 (515)
                      .....++..+ +++..++++.++..                      +++.+...+.+ ++.||.||.|.|
T Consensus       113 ~~~~~~~~~g-v~~~~~~~v~~i~~----------------------~gv~~~~~g~e~~i~aD~Vv~A~G  160 (162)
T d1ps9a2         113 IHRTTLLSRG-VKMIPGVSYQKIDD----------------------DGLHVVINGETQVLAVDNVVICAG  160 (162)
T ss_dssp             HHHHHHHHTT-CEEECSCEEEEEET----------------------TEEEEEETTEEEEECCSEEEECCC
T ss_pred             HHHHHHhhCC-eEEEeeeEEEEEcC----------------------CCCEEecCCeEEEEECCEEEECCC
Confidence            3455566666 99999999999853                      44555544332 689999999998

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.55  E-value=0.00077  Score=57.40  Aligned_cols=33  Identities=36%  Similarity=0.259  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ..|+|||+|..|+++|..|++.    |++|.+++|++
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~----G~~V~~~~r~~   34 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALK----GQSVLAWDIDA   34 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHHC----CCEEEEEECCH
Confidence            4699999999999999999996    99999999875

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.50  E-value=0.0011  Score=49.66  Aligned_cols=35  Identities=14%  Similarity=0.308  Sum_probs=31.9

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      -+|+|+|.|.+|+++|..|++.    |.+|+++|.+..+
T Consensus         6 K~v~ViGlG~sG~s~a~~L~~~----g~~v~~~D~~~~~   40 (93)
T d2jfga1           6 KNVVIIGLGLTGLSCVDFFLAR----GVTPRVMDTRMTP   40 (93)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT----TCCCEEEESSSSC
T ss_pred             CEEEEEeECHHHHHHHHHHHHC----CCEEEEeeCCcCc
Confidence            4699999999999999999996    9999999997765

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=96.50  E-value=0.018  Score=45.30  Aligned_cols=36  Identities=33%  Similarity=0.540  Sum_probs=32.0

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ..+|+|||||-+.+-.|+.|++.    .-+|+|+-|++..
T Consensus        30 gk~V~VvGgG~sA~~~A~~L~~~----a~~V~li~r~~~~   65 (126)
T d1fl2a2          30 GKRVAVIGGGNSGVEAAIDLAGI----VEHVTLLEFAPEM   65 (126)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTT----BSEEEEECSSSSC
T ss_pred             CceEEEEeCCHHHHHHHHhhhcc----CCceEEEeccccc
Confidence            46899999999999999999997    6799999888754

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.26  E-value=0.0015  Score=55.12  Aligned_cols=34  Identities=18%  Similarity=0.195  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      -.|+|||+|-.|..+|..|++.    |++|+|+||...
T Consensus         3 K~IliiGaG~~G~~~a~~L~~~----g~~V~v~dr~~~   36 (182)
T d1e5qa1           3 KSVLMLGSGFVTRPTLDVLTDS----GIKVTVACRTLE   36 (182)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTT----TCEEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC----CCEEEEEECChH
Confidence            4699999999999999999996    999999999874

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.24  E-value=0.0015  Score=52.29  Aligned_cols=34  Identities=29%  Similarity=0.403  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      +.|+|+|+|..|..+|..|.+.    |++|+++|+++.
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~----g~~v~vid~d~~   34 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEK----GHDIVLIDIDKD   34 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCEEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHC----CCCcceecCChh
Confidence            4699999999999999999986    999999999874

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.17  E-value=0.0022  Score=53.40  Aligned_cols=35  Identities=20%  Similarity=0.199  Sum_probs=32.0

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ++|+|||+|-.|..+|..|++.    |++|++++|.+..
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~----G~~V~~~~r~~~~   35 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQ----GHEVQGWLRVPQP   35 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSCCS
T ss_pred             CEEEEECcCHHHHHHHHHHHHC----CCceEEEEcCHHH
Confidence            4799999999999999999996    9999999998754

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.00  E-value=0.07  Score=41.93  Aligned_cols=37  Identities=32%  Similarity=0.347  Sum_probs=32.7

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      +.-+|+|||||-+.+-.|+.|++.    --+|+|+-|++.+
T Consensus        33 rgk~V~VvGgGdsA~e~A~~L~~~----a~~V~li~r~~~~   69 (130)
T d1vdca2          33 RNKPLAVIGGGDSAMEEANFLTKY----GSKVYIIHRRDAF   69 (130)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTT----SSEEEEECSSSSC
T ss_pred             CCCEEEEEcCchHHHHHHHHHhCC----CCcEEEEEecccc
Confidence            346899999999999999999997    6799999888755

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.00  E-value=0.0035  Score=52.50  Aligned_cols=37  Identities=22%  Similarity=0.247  Sum_probs=33.4

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      .+.+|+|||||.+|+.+|..+.+.    |..|+++|.+...
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~l----GA~V~v~D~~~~~   64 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRL----GAVVMATDVRAAT   64 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSCSTT
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHc----CCEEEEEeccHHH
Confidence            357899999999999999999998    9999999998854

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=95.99  E-value=0.079  Score=41.38  Aligned_cols=36  Identities=28%  Similarity=0.420  Sum_probs=32.2

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      .-+|+|||||-+.+-.|+.|++.    .-+|+++-|++..
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~~~----a~~V~li~r~~~~   62 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLSNI----ASEVHLIHRRDGF   62 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTT----SSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHhhc----CCcEEEEeecccc
Confidence            46899999999999999999997    7899999888754

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=95.98  E-value=0.0033  Score=51.85  Aligned_cols=35  Identities=31%  Similarity=0.437  Sum_probs=32.4

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      .+.+|+|||+|.+|+.++..+++.    |..|+++|.+.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~l----GA~V~~~D~~~   65 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGL----GAQVQIFDINV   65 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT----TCEEEEEESCH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhC----CCEEEEEeCcH
Confidence            457899999999999999999998    99999999876

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.41  E-value=0.0051  Score=53.09  Aligned_cols=33  Identities=24%  Similarity=0.320  Sum_probs=30.4

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ++|.|||.|-.|+.+|..|++.    |++|..+|.+.
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~----g~~V~g~D~n~   33 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSAR----GHEVIGVDVSS   33 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT----TCEEEEECSCH
T ss_pred             CEEEEECCCHhHHHHHHHHHhC----CCcEEEEeCCH
Confidence            4699999999999999999996    99999999875

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=95.38  E-value=0.008  Score=49.27  Aligned_cols=41  Identities=24%  Similarity=0.316  Sum_probs=33.4

Q ss_pred             CCCCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           50 TNNDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        50 ~~~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      +++.++.+|.|||+|-.|.++|+.|+..+.   .++.++|.++.
T Consensus         2 ~~~~k~~KI~IIGaG~VG~~lA~~l~~~~~---~el~L~D~~~~   42 (154)
T d1pzga1           2 ALVQRRKKVAMIGSGMIGGTMGYLCALREL---ADVVLYDVVKG   42 (154)
T ss_dssp             CCCSCCCEEEEECCSHHHHHHHHHHHHHTC---CEEEEECSSSS
T ss_pred             ccccCCCcEEEECCCHHHHHHHHHHHhCCC---ceEEEEEeccc
Confidence            445678999999999999999999888621   37999997763

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.0064  Score=51.96  Aligned_cols=34  Identities=29%  Similarity=0.541  Sum_probs=31.3

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      -+|+|||+|.-|...|..++++    |++|+++|+++.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~----G~~V~l~D~~~~   38 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAAT----GHTVVLVDQTED   38 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCEEEEECSCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhC----CCcEEEEECChH
Confidence            3799999999999999999996    999999998874

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=95.18  E-value=0.0086  Score=48.57  Aligned_cols=39  Identities=26%  Similarity=0.372  Sum_probs=32.3

Q ss_pred             CCCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           52 NDDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        52 ~~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      |+++.+|.|||+|-.|.++|+.|+..+.  .-++.++|++.
T Consensus         2 m~~~~KI~IIGaG~VG~~~A~~l~~~~~--~~elvL~D~~~   40 (146)
T d1ez4a1           2 MPNHQKVVLVGDGAVGSSYAFAMAQQGI--AEEFVIVDVVK   40 (146)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHHTC--CSEEEEECSSH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCC--CcEEEEeeccc
Confidence            4456799999999999999999999632  24899999876

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=94.87  E-value=0.0082  Score=50.99  Aligned_cols=33  Identities=30%  Similarity=0.419  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      +|+|||+|.-|...|..++++    |++|+++|+++.
T Consensus         6 ~vaViGaG~mG~~iA~~~a~~----G~~V~l~D~~~~   38 (186)
T d1wdka3           6 QAAVLGAGIMGGGIAYQSASK----GTPILMKDINEH   38 (186)
T ss_dssp             SEEEECCHHHHHHHHHHHHHT----TCCEEEECSSHH
T ss_pred             EEEEECcCHHHHHHHHHHHhC----CCeEEEEECCHH
Confidence            599999999999999999996    999999998763

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=94.85  E-value=0.0069  Score=48.29  Aligned_cols=34  Identities=29%  Similarity=0.339  Sum_probs=30.8

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      +++|||+|-.|..+|..|.+.    |++|+++|+++..
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~----g~~vvvid~d~~~   35 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRM----GHEVLAVDINEEK   35 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT----TCCCEEEESCHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHC----CCeEEEecCcHHH
Confidence            589999999999999999996    9999999998753

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.64  E-value=0.03  Score=42.78  Aligned_cols=37  Identities=19%  Similarity=0.306  Sum_probs=33.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ...+|.|+|||--|-++|+...+.    |++|.++|.++..
T Consensus        10 ~~~kigIlGgGQL~rMla~aA~~l----G~~v~v~d~~~~~   46 (111)
T d1kjqa2          10 AATRVMLLGSGELGKEVAIECQRL----GVEVIAVDRYADA   46 (111)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHTT----TCEEEEEESSTTC
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHC----CCEEEEEcCCCCC
Confidence            346899999999999999999998    9999999988764

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=94.43  E-value=0.017  Score=47.73  Aligned_cols=33  Identities=24%  Similarity=0.345  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ++|.|||.|.-|.++|..|++.    |++|+++|+++
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~----g~~V~~~d~~~   33 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRR----GHYLIGVSRQQ   33 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCEEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHC----CCEEEEEECCc
Confidence            4699999999999999999996    99999999875

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=94.35  E-value=0.019  Score=48.75  Aligned_cols=33  Identities=30%  Similarity=0.372  Sum_probs=30.5

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      .+|+|||+|--|.++|..|++.    |++|.++.|++
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~----g~~V~l~~r~~   40 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKK----CREVCVWHMNE   40 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTT----EEEEEEECSCH
T ss_pred             ceEEEECCCHHHHHHHHHHHHc----CCeEEEEEecH
Confidence            4799999999999999999996    89999999875

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.13  E-value=0.023  Score=48.45  Aligned_cols=33  Identities=36%  Similarity=0.608  Sum_probs=29.3

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ++|+|||.|-.||.+|..|++     |++|+.||-++.
T Consensus         1 MkI~ViGlG~vGl~~a~~~a~-----g~~V~g~Din~~   33 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLSL-----QNEVTIVDILPS   33 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-----TSEEEEECSCHH
T ss_pred             CEEEEECCChhHHHHHHHHHC-----CCcEEEEECCHH
Confidence            469999999999999998876     899999997763

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.08  E-value=0.016  Score=48.79  Aligned_cols=33  Identities=27%  Similarity=0.355  Sum_probs=29.6

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ++|.|||+|.-|.++|..|++.    |++|.++.|..
T Consensus         1 MkI~ViGaG~~GtalA~~la~~----g~~V~l~~r~~   33 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDN----GNEVRIWGTEF   33 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHH----CCEEEEECCGG
T ss_pred             CEEEEECCCHHHHHHHHHHHHC----CCEEEEEEecc
Confidence            4799999999999999999996    89999997643

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.02  E-value=0.029  Score=43.07  Aligned_cols=34  Identities=24%  Similarity=0.195  Sum_probs=30.5

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ...|+|||||..|..-|..|.+.    |.+|+|+....
T Consensus        12 ~k~vlVvG~G~va~~ka~~ll~~----ga~v~v~~~~~   45 (113)
T d1pjqa1          12 DRDCLIVGGGDVAERKARLLLEA----GARLTVNALTF   45 (113)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT----TBEEEEEESSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC----CCeEEEEeccC
Confidence            45899999999999999999996    99999997655

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.69  E-value=0.022  Score=46.27  Aligned_cols=34  Identities=18%  Similarity=0.441  Sum_probs=30.1

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSN   91 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~   91 (515)
                      +...|+|||||..|+.-|..|.++    |.+|+|+...
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~----GA~VtVvap~   45 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPT----GCKLTLVSPD   45 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGG----TCEEEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC----CCEEEEEeCC
Confidence            346799999999999999999997    9999999543

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.56  E-value=0.027  Score=47.55  Aligned_cols=33  Identities=27%  Similarity=0.410  Sum_probs=29.7

Q ss_pred             ccEEEE-CCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVV-GGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIV-GgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ++|+|| |+|--|.++|..|++.    |++|+|+.|++
T Consensus         1 Mki~vigGaG~iG~alA~~la~~----G~~V~l~~R~~   34 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATL----GHEIVVGSRRE   34 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTT----TCEEEEEESSH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHC----CCEEEEEECCH
Confidence            469999 6699999999999997    99999999876

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.51  E-value=0.054  Score=44.01  Aligned_cols=36  Identities=19%  Similarity=0.107  Sum_probs=30.3

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      -+|+|||||-+|+=+|..|.|.+   ..+|++++|++..
T Consensus        46 ~kVvVIGGGdtA~D~A~~a~r~G---A~~V~vi~rr~~~   81 (153)
T d1gtea3          46 GAVIVLGAGDTAFDCATSALRCG---ARRVFLVFRKGFV   81 (153)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTT---CSEEEEECSSCGG
T ss_pred             CEEEEECCChhHHHHHHHHHHcC---CcceeEEEeCChh
Confidence            47999999999999999998872   3569999998754

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=93.49  E-value=0.049  Score=44.12  Aligned_cols=35  Identities=23%  Similarity=0.314  Sum_probs=31.4

Q ss_pred             ccEEEEC-CCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           56 YDVAVVG-GGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIVG-gG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      -+|.||| .|.-|..+|..|++.    |++|.++|+....
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~----G~~V~~~d~~~~~   45 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRAS----GYPISILDREDWA   45 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTT----TCCEEEECTTCGG
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHc----CCCcEeccccccc
Confidence            4799999 699999999999996    9999999997643

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.41  E-value=0.04  Score=45.57  Aligned_cols=34  Identities=21%  Similarity=0.208  Sum_probs=29.0

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      -.|+|+|+|+.|++++..++..    |.+|+++++.+.
T Consensus        29 ~~vlI~GaG~vG~~a~q~ak~~----G~~vi~~~~~~~   62 (168)
T d1piwa2          29 KKVGIVGLGGIGSMGTLISKAM----GAETYVISRSSR   62 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH----TCEEEEEESSST
T ss_pred             CEEEEECCCCcchhHHHHhhhc----cccccccccchh
Confidence            4699999999999988877765    899999998764

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=93.19  E-value=0.037  Score=45.74  Aligned_cols=33  Identities=21%  Similarity=0.325  Sum_probs=28.9

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      -.|+|+|+|+.|+.++..++..    |.+|+++|+.+
T Consensus        28 ~~vlV~G~G~vG~~~~~~ak~~----Ga~vi~v~~~~   60 (170)
T d1e3ja2          28 TTVLVIGAGPIGLVSVLAAKAY----GAFVVCTARSP   60 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCEEEEEESCH
T ss_pred             CEEEEEcccccchhhHhhHhhh----cccccccchHH
Confidence            3699999999999998888775    89999999876

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.02  E-value=0.034  Score=46.17  Aligned_cols=32  Identities=28%  Similarity=0.394  Sum_probs=28.5

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~   92 (515)
                      .|+|+|+|+.|+.++..|+..    |. +|+++|+++
T Consensus        29 ~VlI~G~G~iG~~~~~~a~~~----G~~~Vi~~d~~~   61 (171)
T d1pl8a2          29 KVLVCGAGPIGMVTLLVAKAM----GAAQVVVTDLSA   61 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT----TCSEEEEEESCH
T ss_pred             EEEEECCCccHHHHHHHHHHc----CCceEEeccCCH
Confidence            699999999999999999886    76 799999776

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.89  E-value=0.036  Score=45.66  Aligned_cols=33  Identities=33%  Similarity=0.278  Sum_probs=28.7

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      -.|+|+|+|+.|++++..++..    |.+|+++++.+
T Consensus        29 ~~VlV~GaG~vG~~~~~~ak~~----G~~Vi~~~~~~   61 (166)
T d1llua2          29 QWVAISGIGGLGHVAVQYARAM----GLHVAAIDIDD   61 (166)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCEEEEEESCH
T ss_pred             CEEEEeeccccHHHHHHHHHHc----CCccceecchh
Confidence            4699999999999988888775    89999998775

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.79  E-value=0.092  Score=42.77  Aligned_cols=37  Identities=35%  Similarity=0.471  Sum_probs=30.7

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ...+|.|||+|-.|.++|+.|...++  .-++.++|.+.
T Consensus        18 ~~~KI~IIGaG~VG~~~A~~l~~~~l--~~elvL~D~~~   54 (159)
T d2ldxa1          18 SRCKITVVGVGDVGMACAISILLKGL--ADELALVDADT   54 (159)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTS--CSEEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCC--CCEEEEEeCCc
Confidence            44689999999999999999999732  23799999775

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=92.59  E-value=0.069  Score=42.73  Aligned_cols=36  Identities=28%  Similarity=0.438  Sum_probs=30.1

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ++|.|||+|-.|.++|+.|+..+.  .-++.++|..+.
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l--~~el~L~Di~~~   36 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQL--ARELVLLDVVEG   36 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC--CSEEEEECSSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC--CceEEEeccccc
Confidence            479999999999999999999632  248999998774

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=92.41  E-value=0.093  Score=42.79  Aligned_cols=35  Identities=37%  Similarity=0.497  Sum_probs=30.6

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCc--EEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHL--SVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~--~V~v~E~~~   92 (515)
                      ++.+|.|||+|-.|.++|+.|...    |+  ++.++|...
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~~----~l~~ElvLiD~~~   55 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILGK----SLADELALVDVLE   55 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHT----TCCSEEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhc----CCCcEEEEEEecc
Confidence            356999999999999999999996    54  799999875

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.32  E-value=0.055  Score=52.48  Aligned_cols=39  Identities=26%  Similarity=0.398  Sum_probs=36.2

Q ss_pred             CCCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCCC
Q 010200           53 DDQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPALG   95 (515)
Q Consensus        53 ~~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~~   95 (515)
                      +..+||||+|-|+.=..+|.+|++.    |.+|+-+||+...+
T Consensus         4 P~e~DVII~GTGL~ESILAaAlSr~----GkkVLHiD~N~yYG   42 (491)
T d1vg0a1           4 PSDFDVIVIGTGLPESIIAAACSRS----GQRVLHVDSRSYYG   42 (491)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHT----TCCEEEECSSSSSC
T ss_pred             CCccCEEEECCChHHHHHHHHHHhc----CCEEEEecCCCcCC
Confidence            4679999999999999999999996    99999999999874

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.28  E-value=0.061  Score=43.18  Aligned_cols=35  Identities=31%  Similarity=0.483  Sum_probs=28.7

Q ss_pred             ccEEEECC-CHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGG-GMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGg-G~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ++|.|||| |-.|.++|+.|+..+.  --++.++|...
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l--~~el~L~D~~~   36 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPF--MKDLVLIGREH   36 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTT--CCEEEEEECGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCc--ccccccccchh
Confidence            46999996 9999999999999622  13899999875

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.08  E-value=0.086  Score=37.09  Aligned_cols=34  Identities=21%  Similarity=0.301  Sum_probs=31.3

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      .|.|+|||-=|-+++.+..+.    |++|.+++.++..
T Consensus         3 ~vgIlG~GQLgrMl~~Aa~~L----G~~v~vldp~~~~   36 (78)
T d3etja2           3 QVCVLGNGQLGRMLRQAGEPL----GIAVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEBCSHHHHHHHHHHGGG----TEEEEEECTTSCG
T ss_pred             EEEEEcCCHHHHHHHHHHHHc----CCEEEEEcCCCCC
Confidence            589999999999999999998    9999999987754

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.98  E-value=0.08  Score=42.64  Aligned_cols=37  Identities=27%  Similarity=0.466  Sum_probs=30.5

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ...+|.|||+|-.|.++|+.|+..++  .-++.++|..+
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l--~~el~L~Di~~   41 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGI--ADEIVLIDANE   41 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTC--CSEEEEECSSH
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCC--CceEEEEeecc
Confidence            45689999999999999999998632  23799999766

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=91.72  E-value=0.061  Score=44.99  Aligned_cols=33  Identities=24%  Similarity=0.374  Sum_probs=28.5

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~   92 (515)
                      -.|+|+|+|+.|+.+...++..    |. +|+++|+++
T Consensus        30 ~~VlV~GaG~iG~~~~~~ak~~----Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          30 KTVVIQGAGPLGLFGVVIARSL----GAENVIVIAGSP   63 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TBSEEEEEESCH
T ss_pred             CEEEEECCCccchhheeccccc----cccccccccccc
Confidence            4699999999999998888875    86 799998876

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=91.64  E-value=0.063  Score=41.97  Aligned_cols=38  Identities=24%  Similarity=0.385  Sum_probs=30.6

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEE-EEEcCCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSV-AIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V-~v~E~~~~~   94 (515)
                      +++.|+|+|||-+|-+++..+.+.   .|+++ ..+|-++..
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~---~~~~iv~fiDdd~~k   40 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFG---ESFELRGFFDVDPEK   40 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCC---SSEEEEEEEESCTTT
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhc---CCcEEEEEEeCchHh
Confidence            568999999999999999888775   48874 477877654

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.56  E-value=0.057  Score=44.22  Aligned_cols=34  Identities=26%  Similarity=0.490  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ++|.|||-|.-|...|..|++.    |++|.++++.+.
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~----G~~V~~~d~~~~   34 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKA----GYSLVVSDRNPE   34 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT----TCEEEEECSCHH
T ss_pred             CEEEEEehhHHHHHHHHHHHHC----CCeEEEEeCCcc
Confidence            4699999999999999999996    999999998764

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=91.43  E-value=0.084  Score=43.87  Aligned_cols=34  Identities=18%  Similarity=0.334  Sum_probs=31.4

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      .+|.|||-|.-|..+|..|.+.    |++|.+|+|.+.
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~----G~~V~v~dr~~~   36 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDH----GFVVCAFNRTVS   36 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT----TCCEEEECSSTH
T ss_pred             CcEEEEeEhHHHHHHHHHHHHC----CCeEEEEcCCHH
Confidence            5799999999999999999996    999999998874

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=91.30  E-value=0.08  Score=42.32  Aligned_cols=34  Identities=24%  Similarity=0.405  Sum_probs=28.7

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      +|.|||+|-.|.++|+.|+..+   -.++.++|....
T Consensus         3 KI~IIGaG~VG~~~A~~l~~~~---l~dl~l~D~~~~   36 (142)
T d1uxja1           3 KISIIGAGFVGSTTAHWLAAKE---LGDIVLLDIVEG   36 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHT---CSEEEEECSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCC---cceEEEEeeccc
Confidence            7999999999999999999863   238999997664

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=91.18  E-value=0.087  Score=39.76  Aligned_cols=34  Identities=21%  Similarity=0.090  Sum_probs=27.7

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ..+|+|||+|.+|+=.|..|++.    +.+|+++-+++
T Consensus        32 gK~VlVVG~g~Sa~dia~~l~~~----ak~v~~~~~r~   65 (107)
T d2gv8a2          32 GESVLVVGGASSANDLVRHLTPV----AKHPIYQSLLG   65 (107)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTT----SCSSEEEECTT
T ss_pred             CCeEEEECCCCCHHHHHHHHHHh----cCEEEEEEecC
Confidence            46899999999999999999996    55666665554

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=91.13  E-value=0.084  Score=43.43  Aligned_cols=34  Identities=26%  Similarity=0.190  Sum_probs=29.0

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      -.|+|+|+|+.|+.++..++..    |.++++++..+.
T Consensus        32 ~~VlI~GaG~vG~~a~qlak~~----Ga~~i~~~~~~~   65 (168)
T d1uufa2          32 KKVGVVGIGGLGHMGIKLAHAM----GAHVVAFTTSEA   65 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCEEEEEESSGG
T ss_pred             CEEEEeccchHHHHHHHHhhcc----cccchhhccchh
Confidence            4699999999999998888875    999999987663

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=91.02  E-value=0.093  Score=43.62  Aligned_cols=33  Identities=36%  Similarity=0.532  Sum_probs=30.6

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ++|-|||-|.-|..+|..|.+.    |++|.+++|..
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~----G~~V~~~dr~~   34 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEK----GFKVAVFNRTY   34 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT----TCCEEEECSSH
T ss_pred             CEEEEEeehHHHHHHHHHHHHC----CCeEEEEECCH
Confidence            5799999999999999999996    99999999865

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=90.91  E-value=0.13  Score=41.00  Aligned_cols=35  Identities=29%  Similarity=0.397  Sum_probs=28.9

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      .+|.|||+|-.|.++|+.|...+.  .-++.++|..+
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l--~~ElvL~D~~~   36 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGI--AREIVLEDIAK   36 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC--CSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCC--CcEEEEEEecc
Confidence            479999999999999999998632  23799999765

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=90.90  E-value=0.1  Score=43.19  Aligned_cols=33  Identities=24%  Similarity=0.277  Sum_probs=28.2

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~   92 (515)
                      -.|+|+|+|+.|++++..++..    |. +|+++|+.+
T Consensus        29 ~~VlI~GaG~vGl~~~q~ak~~----Ga~~Vi~~d~~~   62 (174)
T d1jqba2          29 SSVVVIGIGAVGLMGIAGAKLR----GAGRIIGVGSRP   62 (174)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTT----TCSCEEEECCCH
T ss_pred             CEEEEEcCCcchhhhhhhhhcc----cccccccccchh
Confidence            4699999999999999988886    75 699998765

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=90.72  E-value=0.13  Score=41.00  Aligned_cols=36  Identities=28%  Similarity=0.399  Sum_probs=28.3

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      +|.|||+|-.|.++|+.|+..+.  .-++.++|.....
T Consensus         3 KI~IIGaG~VG~~~a~~l~~~~l--~~el~L~D~~~~~   38 (142)
T d1y6ja1           3 KVAIIGAGFVGASAAFTMALRQT--ANELVLIDVFKEK   38 (142)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTC--SSEEEEECCC---
T ss_pred             eEEEECCCHHHHHHHHHHHhcCC--CCEEEEEeccCCc
Confidence            69999999999999999998632  2379999987743

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.23  E-value=0.12  Score=41.09  Aligned_cols=35  Identities=26%  Similarity=0.382  Sum_probs=28.8

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ++|.|||+|-.|.++|+.|+..+.  .-++.++|.+.
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l--~~el~L~Di~~   35 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGF--AREMVLIDVDK   35 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTC--CSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC--CCEEEEEeccc
Confidence            479999999999999999888632  34799998765

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=90.21  E-value=0.12  Score=41.68  Aligned_cols=33  Identities=18%  Similarity=0.299  Sum_probs=30.2

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      .|||+|.|..|..++..|.+.    |.+|+|+|.++.
T Consensus         5 HiII~G~g~~g~~l~~~L~~~----~~~v~vId~d~~   37 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQR----GQNVTVISNLPE   37 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT----TCCEEEEECCCH
T ss_pred             EEEEECCCHHHHHHHHHHHHc----CCCEEEEeccch
Confidence            599999999999999999996    899999998763

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=90.15  E-value=0.11  Score=41.73  Aligned_cols=35  Identities=29%  Similarity=0.405  Sum_probs=28.3

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      .+|.|||+|-.|.++|+.|...+.  .-++.++|.+.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~--~~elvL~Di~~   36 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGV--ADDYVFIDANE   36 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTC--CSEEEEECSSH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCC--CceEEEEeccc
Confidence            369999999999999999988521  23799998765

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=90.06  E-value=0.15  Score=41.97  Aligned_cols=34  Identities=18%  Similarity=0.300  Sum_probs=30.6

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ..+|+|+|+|-++-+.++.|.+.    |.+|.|+.|..
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~----g~~i~I~nRt~   51 (170)
T d1nyta1          18 GLRILLIGAGGASRGVLLPLLSL----DCAVTITNRTV   51 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHhccc----ceEEEeccchH
Confidence            45799999999999999999997    78999998875

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=89.81  E-value=0.13  Score=42.50  Aligned_cols=34  Identities=26%  Similarity=0.261  Sum_probs=28.9

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~   93 (515)
                      -.|+|+|+|+.|+++++.++..    |. +|++.|..+.
T Consensus        30 ~~VlV~G~G~iGl~a~~~ak~~----Ga~~Vi~~d~~~~   64 (174)
T d1e3ia2          30 STCAVFGLGCVGLSAIIGCKIA----GASRIIAIDINGE   64 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT----TCSEEEEECSCGG
T ss_pred             CEEEEECCChHHHHHHHHHHHh----CCceeeeeccchH
Confidence            4699999999999999999987    76 6778887763

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=89.79  E-value=0.21  Score=41.07  Aligned_cols=34  Identities=32%  Similarity=0.397  Sum_probs=28.9

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      .|+|+|+|+.|++++..++..+   +.+|+++++.+.
T Consensus        31 ~VlI~G~Gg~g~~~~~~~~~~g---~~~Vi~~~~~~~   64 (175)
T d1cdoa2          31 TCAVFGLGAVGLAAVMGCHSAG---AKRIIAVDLNPD   64 (175)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT---CSEEEEECSCGG
T ss_pred             EEEEEecCCccchHHHHHHHHh---hchheeecchHH
Confidence            4999999999999999999873   568999988764

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=89.70  E-value=0.12  Score=43.61  Aligned_cols=34  Identities=38%  Similarity=0.420  Sum_probs=27.7

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      -.|+|+|+|+.|++++..++..+   ..+|++.|..+
T Consensus        27 ~tVlV~GaG~vGl~a~~~ak~~g---a~~Vi~~d~~~   60 (195)
T d1kola2          27 STVYVAGAGPVGLAAAASARLLG---AAVVIVGDLNP   60 (195)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT---CSEEEEEESCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhhc---ccceeeecccc
Confidence            47999999999999999887762   44888888765

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=89.32  E-value=0.15  Score=42.22  Aligned_cols=34  Identities=26%  Similarity=0.241  Sum_probs=29.7

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCC-cEEEEEcCCCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPAL   94 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G-~~V~v~E~~~~~   94 (515)
                      -|+|+|+|+.|+.+...++..    | .+|+++|..+.-
T Consensus        32 tVlI~G~GgvGl~ai~~ak~~----G~~~Vi~vd~~~~k   66 (176)
T d1d1ta2          32 TCVVFGLGGVGLSVIMGCKSA----GASRIIGIDLNKDK   66 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT----TCSEEEEECSCGGG
T ss_pred             EEEEECCCchhHHHHHHHHHc----CCceEEEecCcHHH
Confidence            499999999999999999987    6 689999987743

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=89.16  E-value=0.16  Score=40.87  Aligned_cols=35  Identities=26%  Similarity=0.218  Sum_probs=30.9

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ++|.|||.|-.|..+|..|++.    |++|+++++....
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~----g~~v~~~~~~~~~   35 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSR----GVEVVTSLEGRSP   35 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHT----TCEEEECCTTCCH
T ss_pred             CEEEEEcHHHHHHHHHHHHHHC----CCeEEEEcCchhH
Confidence            4699999999999999999996    9999999876643

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.14  E-value=0.14  Score=41.74  Aligned_cols=33  Identities=27%  Similarity=0.230  Sum_probs=28.0

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      -.|+|+|+|+.|++++..++..    |.+|.++++.+
T Consensus        29 ~~vlv~G~G~iG~~a~~~a~~~----g~~v~~~~~~~   61 (168)
T d1rjwa2          29 EWVAIYGIGGLGHVAVQYAKAM----GLNVVAVDIGD   61 (168)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT----TCEEEEECSCH
T ss_pred             CEEEEeecccchhhhhHHHhcC----CCeEeccCCCH
Confidence            4699999999999988888875    88999988655

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=89.09  E-value=0.24  Score=39.70  Aligned_cols=36  Identities=25%  Similarity=0.399  Sum_probs=29.9

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      +.+|.|||+|-.|.++|+.|.+.+.   .++.++|....
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l---~el~L~Di~~~   38 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNL---GDVVLFDIVKN   38 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC---CEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC---CeEEEEeccCC
Confidence            3589999999999999999988642   37999998664

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.70  E-value=0.16  Score=41.37  Aligned_cols=33  Identities=21%  Similarity=0.366  Sum_probs=30.3

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      +|.|||-|.-|...|..|.+.    |++|.+|++.+.
T Consensus         3 kIg~IGlG~MG~~iA~~L~~~----g~~v~~~d~~~~   35 (162)
T d3cuma2           3 QIAFIGLGHMGAPMATNLLKA----GYLLNVFDLVQS   35 (162)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT----TCEEEEECSSHH
T ss_pred             EEEEEEEHHHHHHHHHHHHHC----CCeEEEEECchh
Confidence            599999999999999999996    999999998753

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.70  E-value=0.2  Score=39.97  Aligned_cols=34  Identities=32%  Similarity=0.477  Sum_probs=27.2

Q ss_pred             cEEEECC-CHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           57 DVAVVGG-GMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        57 dVvIVGg-G~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      +|+|||| |-.|.++|+.|+..+.  =-++.++|...
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~--~~elvLiDi~~   36 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPL--VSRLTLYDIAH   36 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTT--CSEEEEEESSS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCc--cceEEEEeccc
Confidence            6999996 9999999999998632  12688998654

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.65  E-value=0.19  Score=40.04  Aligned_cols=36  Identities=22%  Similarity=0.209  Sum_probs=28.9

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ++|.|||+|-.|.++|+.|+..+.  --++.++|.++.
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~--~~elvL~Di~~~   36 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLD--VDEIALVDIAED   36 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSC--CSEEEEECSSHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCc--CceEEEEecccc
Confidence            479999999999999999987532  136999997663

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=87.70  E-value=0.24  Score=40.48  Aligned_cols=34  Identities=32%  Similarity=0.398  Sum_probs=27.7

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      +|.|||.|.-|.++|..|++.++  ..+|..+|++.
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~--~~~I~~~D~~~   36 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGF--KGKIYGYDINP   36 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTC--CSEEEEECSCH
T ss_pred             EEEEEccCHHHHHHHHHHHhcCC--CeEEEEEECCh
Confidence            59999999999999999999621  24677788765

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=87.70  E-value=0.015  Score=51.05  Aligned_cols=35  Identities=11%  Similarity=0.134  Sum_probs=32.1

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      .+|+|||||..|+-+|..|++.    |.+|+|+++++..
T Consensus       181 ~~vvViGgG~~g~e~A~~l~~~----g~~Vtli~r~~~~  215 (233)
T d1djqa3         181 APRLIADATFTGHRVAREIEEA----NPQIAIPYKRETI  215 (233)
T ss_dssp             SCCCHHHHHHHHHHHHHTTTSS----CTTSCCCCCCCCC
T ss_pred             CceeEecCchHHHHHHHHHHhc----CCceEEEEecccc
Confidence            5799999999999999999996    8999999998865

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=87.65  E-value=0.22  Score=40.74  Aligned_cols=34  Identities=21%  Similarity=0.273  Sum_probs=29.8

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~   92 (515)
                      ..+|+|+|+|-++-+.++.|++.    |. +|.|+.|..
T Consensus        17 ~~~vlIlGaGGaarai~~aL~~~----g~~~I~I~nR~~   51 (167)
T d1npya1          17 NAKVIVHGSGGMAKAVVAAFKNS----GFEKLKIYARNV   51 (167)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHT----TCCCEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC----CCCEEEEecccH
Confidence            45799999999999999999997    75 799998765

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=87.47  E-value=0.25  Score=39.37  Aligned_cols=35  Identities=37%  Similarity=0.566  Sum_probs=27.2

Q ss_pred             ccEEEEC-CCHHHHHHHHHHh-cCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVG-GGMVGMALACSLA-SMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVG-gG~aGl~~A~~L~-~~~~~~G~~V~v~E~~~   92 (515)
                      ++|.||| +|-.|.++|+.|+ +.+.  ..++.++|..+
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~--~~el~L~D~~~   37 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPS--GSELSLYDIAP   37 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCT--TCEEEEECSST
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCC--CcEEEEecccc
Confidence            4799999 5999999999885 3221  46899999654

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=86.95  E-value=0.35  Score=38.79  Aligned_cols=33  Identities=18%  Similarity=0.262  Sum_probs=29.8

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ++|.|||.|--|.++|..|.+.    |+++.|++|..
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~----~~~i~v~~r~~   33 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQT----PHELIISGSSL   33 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTS----SCEEEEECSSH
T ss_pred             CEEEEEeccHHHHHHHHHHHhC----CCeEEEEcChH
Confidence            4699999999999999999985    89999999875

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=86.22  E-value=0.22  Score=41.09  Aligned_cols=34  Identities=15%  Similarity=0.169  Sum_probs=26.6

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~   92 (515)
                      .-.|+|+|+|+.|++++..++..    |. .|.+.+..+
T Consensus        29 g~~VlI~G~G~iG~~~~~~ak~~----g~~~v~~~~~~~   63 (174)
T d1f8fa2          29 ASSFVTWGAGAVGLSALLAAKVC----GASIIIAVDIVE   63 (174)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHH----TCSEEEEEESCH
T ss_pred             CCEEEEeCCCHHHhhhhhccccc----ccceeeeeccHH
Confidence            34699999999999999998886    55 455666554

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=85.99  E-value=0.33  Score=39.87  Aligned_cols=34  Identities=24%  Similarity=0.266  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           57 DVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        57 dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      .|+|+|+|..|++++..++..+   +.+|++.+..+.
T Consensus        31 tVlV~GaGG~G~~~~~~~~~~g---~~~Vi~~~~~~~   64 (176)
T d2jhfa2          31 TCAVFGLGGVGLSVIMGCKAAG---AARIIGVDINKD   64 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT---CSEEEEECSCGG
T ss_pred             EEEEECCCCcHHHHHHHHHHcC---CceEEeecCcHH
Confidence            4999999999999999999972   468999988774

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.35  E-value=0.34  Score=39.19  Aligned_cols=34  Identities=29%  Similarity=0.314  Sum_probs=31.3

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      -..|+|||-|..|-..|..|+..    |.+|+|+|.++
T Consensus        24 Gk~v~V~GyG~iG~g~A~~~rg~----G~~V~v~e~dp   57 (163)
T d1li4a1          24 GKVAVVAGYGDVGKGCAQALRGF----GARVIITEIDP   57 (163)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT----TCEEEEECSCH
T ss_pred             CCEEEEeccccccHHHHHHHHhC----CCeeEeeeccc
Confidence            34699999999999999999997    99999999987

>d2voua2 d.16.1.2 (A:164-291) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: PHBH-like
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=85.25  E-value=0.21  Score=38.92  Aligned_cols=47  Identities=15%  Similarity=0.082  Sum_probs=31.4

Q ss_pred             CceEEEEEEEeecCC--------ceEEEEecCCCcEEEEecCCC------ceEEEEEcCCC
Q 010200          264 SQNAIICTVEHNKEN--------YCAWQRFLPAGPIALLPIGDN------FSNIVWTMNPK  310 (515)
Q Consensus       264 ~~~~~~~~~~~~~~~--------~~~~~~~~~~g~~~~~p~~~~------~~~~~~~~~~~  310 (515)
                      ++.++.+.++...-.        +.....+.+++++..+|++++      ..|++|+....
T Consensus         5 G~vAwRglv~~~~l~~~~~~~~~~~~~~~~g~~~h~v~YpI~g~~~~~~~~~N~V~~~~~~   65 (128)
T d2voua2           5 GYVTWRGVLQPGEVADDVWNYFNDKFTYGLLDDGHLIAYPIPGRENAESPRLNFQWYWNVA   65 (128)
T ss_dssp             EEEEEEEEECTTSSCHHHHHHHTTEEEEEEETTEEEEEEEECCSSTTSCCEEEEEEEEECC
T ss_pred             CeEEEEEEeehHHCCHhHHhhccCceEEEEcCCceEEEEEecCCCCCCcceEEEEEEEeCC
Confidence            455666666655322        344556779999999999643      58999887543

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=84.96  E-value=0.27  Score=40.31  Aligned_cols=34  Identities=29%  Similarity=0.288  Sum_probs=27.3

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      -.|+|+|+|+.|+.++..++..+   +..|++.++.+
T Consensus        34 ~~vli~GaG~vG~~~~~~a~~~g---~~~vv~~~~~~   67 (172)
T d1h2ba2          34 AYVAIVGVGGLGHIAVQLLKVMT---PATVIALDVKE   67 (172)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHC---CCEEEEEESSH
T ss_pred             CEEEEeCCChHHHHHHHHHHhhc---Ccccccccchh
Confidence            46999999999999999887762   35777787765

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=84.80  E-value=0.32  Score=40.00  Aligned_cols=34  Identities=18%  Similarity=0.178  Sum_probs=28.7

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCC-cEEEEEcCCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKH-LSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G-~~V~v~E~~~~   93 (515)
                      -.|+|+|+|+.|+++...++..    | .+|.+.|..+.
T Consensus        29 ~~VlV~GaGgvGl~a~~~ak~~----G~~~Vi~~d~~~~   63 (174)
T d1p0fa2          29 STCAVFGLGGVGFSAIVGCKAA----GASRIIGVGTHKD   63 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH----TCSEEEEECSCGG
T ss_pred             CEEEEECCCchhHHHHHHHHHc----CCceeeccCChHH
Confidence            3599999999999999999886    6 47888888763

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=84.16  E-value=0.33  Score=39.19  Aligned_cols=34  Identities=29%  Similarity=0.357  Sum_probs=31.8

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      -..|+|+|-|..|-.+|..|+..    |.+|+|.|.+|
T Consensus        23 Gk~vvV~GYG~vGrG~A~~~rg~----Ga~V~V~E~DP   56 (163)
T d1v8ba1          23 GKIVVICGYGDVGKGCASSMKGL----GARVYITEIDP   56 (163)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHH----TCEEEEECSCH
T ss_pred             CCEEEEecccccchhHHHHHHhC----CCEEEEEecCc
Confidence            45799999999999999999997    99999999988

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=83.79  E-value=0.27  Score=39.60  Aligned_cols=24  Identities=33%  Similarity=0.490  Sum_probs=21.6

Q ss_pred             CCccEEEECC-CHHHHHHHHHHhcC
Q 010200           54 DQYDVAVVGG-GMVGMALACSLASM   77 (515)
Q Consensus        54 ~~~dVvIVGg-G~aGl~~A~~L~~~   77 (515)
                      .+++|.|||| |..|.++|+.|+..
T Consensus         3 ~p~KV~IiGA~G~VG~~~a~~l~~~   27 (154)
T d1y7ta1           3 APVRVAVTGAAGQIGYSLLFRIAAG   27 (154)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhc
Confidence            4579999997 99999999999985

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=83.66  E-value=0.56  Score=37.05  Aligned_cols=33  Identities=33%  Similarity=0.454  Sum_probs=26.7

Q ss_pred             cEEEEC-CCHHHHHHHHHHhcCCCCCCcEEEEEcCC
Q 010200           57 DVAVVG-GGMVGMALACSLASMPLTKHLSVAIIDSN   91 (515)
Q Consensus        57 dVvIVG-gG~aGl~~A~~L~~~~~~~G~~V~v~E~~   91 (515)
                      +|.||| +|-.|.++|+.|...+.  .-++.++|..
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l--~~el~L~Di~   35 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDI--ADEVVFVDIP   35 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--CSEEEEECCG
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCC--CCEEEEEecC
Confidence            699999 69999999999998632  2368898853

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=83.47  E-value=0.38  Score=42.03  Aligned_cols=35  Identities=29%  Similarity=0.379  Sum_probs=30.5

Q ss_pred             CccEEEECCCHHHHHHHHHHhcCCCCCCc-EEEEEcCCCC
Q 010200           55 QYDVAVVGGGMVGMALACSLASMPLTKHL-SVAIIDSNPA   93 (515)
Q Consensus        55 ~~dVvIVGgG~aGl~~A~~L~~~~~~~G~-~V~v~E~~~~   93 (515)
                      ...|+|||+|-.|..+|..|++.    |. +++|+|.+..
T Consensus        30 ~~~VliiG~GglGs~va~~La~~----Gvg~i~lvD~D~V   65 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASA----GVGNLTLLDFDTV   65 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHH----TCSEEEEECCCBC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHc----CCCeEEEECCccc
Confidence            36899999999999999999998    55 7999987663

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=83.10  E-value=0.7  Score=37.92  Aligned_cols=34  Identities=21%  Similarity=0.331  Sum_probs=29.4

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      +..+|+|+|+|-++-++++.|++.    | +|.|+-|..
T Consensus        17 ~~k~vlIlGaGG~arai~~aL~~~----~-~i~I~nR~~   50 (177)
T d1nvta1          17 KDKNIVIYGAGGAARAVAFELAKD----N-NIIIANRTV   50 (177)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSS----S-EEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHccc----c-ceeeehhhh
Confidence            346899999999999999999885    6 899998875

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=82.74  E-value=0.71  Score=38.07  Aligned_cols=37  Identities=11%  Similarity=0.147  Sum_probs=31.0

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ...+|+|+|+|-+|-++++.|.+.+   ..+++|+.|...
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g---~~~i~i~nR~~~   53 (182)
T d1vi2a1          17 KGKTMVLLGAGGASTAIGAQGAIEG---LKEIKLFNRRDE   53 (182)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT---CSEEEEEECSST
T ss_pred             CCCEEEEECCcHHHHHHHHHHhhcC---CceEeeeccchH
Confidence            3468999999999999999999972   347999998764

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=82.63  E-value=0.59  Score=41.08  Aligned_cols=34  Identities=18%  Similarity=0.343  Sum_probs=30.5

Q ss_pred             CccEEEECC-CHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           55 QYDVAVVGG-GMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        55 ~~dVvIVGg-G~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      +++|+|.|| |..|-.++..|.+.    |++|+.+++..
T Consensus         1 ~MKIlItGasGfiG~~l~~~L~~~----g~~Vi~~~r~~   35 (281)
T d1vl0a_           1 HMKILITGANGQLGREIQKQLKGK----NVEVIPTDVQD   35 (281)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHTTS----SEEEEEECTTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhC----CCEEEEeechh
Confidence            367999998 99999999999985    99999998865

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=82.45  E-value=0.34  Score=38.96  Aligned_cols=39  Identities=21%  Similarity=0.423  Sum_probs=26.9

Q ss_pred             CCccEEEECC-CHHHHHHHHHHhcCCCC---CCcEEEEEcCCC
Q 010200           54 DQYDVAVVGG-GMVGMALACSLASMPLT---KHLSVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGg-G~aGl~~A~~L~~~~~~---~G~~V~v~E~~~   92 (515)
                      .+++|.|||| |..|.++|+.|+.....   .-....++|...
T Consensus         2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~   44 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITP   44 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGG
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCcc
Confidence            3579999996 99999999999863110   113456666543

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=82.27  E-value=0.52  Score=37.65  Aligned_cols=34  Identities=24%  Similarity=0.353  Sum_probs=29.4

Q ss_pred             ccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           56 YDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        56 ~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ++|.+||+|--|.+.|..|.+.+   +++|.+++|.+
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~---~~~i~v~~r~~   34 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQG---GYRIYIANRGA   34 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHC---SCEEEEECSSH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCC---CCcEEEEeCCh
Confidence            47999999999999999888762   48999999876

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=81.71  E-value=0.83  Score=35.05  Aligned_cols=37  Identities=27%  Similarity=0.374  Sum_probs=31.8

Q ss_pred             CCccEEEECCCH-----------HHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           54 DQYDVAVVGGGM-----------VGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        54 ~~~dVvIVGgG~-----------aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      +.-+|+|+|+||           ++..+..+|++.    |++++++--++..
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~----g~~~iliN~NP~T   53 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREE----GYRVINVNSNPAT   53 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHH----TCEEEEECSCTTC
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHc----CCeEEEecCchHh
Confidence            446799999998           788899999996    9999999988754

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.32  E-value=0.73  Score=38.65  Aligned_cols=34  Identities=15%  Similarity=0.351  Sum_probs=29.7

Q ss_pred             ccEEEECC-CHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           56 YDVAVVGG-GMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        56 ~dVvIVGg-G~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      .+|+|.|| |..|..++..|.+.    |++|+++.|++.
T Consensus         4 kkIlV~GatG~iG~~v~~~Ll~~----g~~V~~~~R~~~   38 (205)
T d1hdoa_           4 KKIAIFGATGQTGLTTLAQAVQA----GYEVTVLVRDSS   38 (205)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHT----TCEEEEEESCGG
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC----cCEEEEEEcChh
Confidence            46999996 99999999988885    999999988764

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=81.06  E-value=0.59  Score=34.13  Aligned_cols=39  Identities=18%  Similarity=0.106  Sum_probs=32.3

Q ss_pred             CCCCCCccEEEECCCHHHHHH-HHHHhcCCCCCCcEEEEEcCCC
Q 010200           50 TNNDDQYDVAVVGGGMVGMAL-ACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        50 ~~~~~~~dVvIVGgG~aGl~~-A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      +++....+|-+||-|-+|+++ |..|++.    |+.|+..|...
T Consensus         3 ~~~~~~~~ihfiGigG~GMs~LA~~L~~~----G~~VsGSD~~~   42 (96)
T d1p3da1           3 PEMRRVQQIHFIGIGGAGMSGIAEILLNE----GYQISGSDIAD   42 (96)
T ss_dssp             CCCTTCCEEEEETTTSTTHHHHHHHHHHH----TCEEEEEESCC
T ss_pred             ccchhCCEEEEEEECHHHHHHHHHHHHhC----CCEEEEEeCCC
Confidence            345556789999999999777 9999985    99999999775

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=80.69  E-value=1.1  Score=33.91  Aligned_cols=36  Identities=19%  Similarity=0.364  Sum_probs=31.3

Q ss_pred             CccEEEECCCH-----------HHHHHHHHHhcCCCCCCcEEEEEcCCCCC
Q 010200           55 QYDVAVVGGGM-----------VGMALACSLASMPLTKHLSVAIIDSNPAL   94 (515)
Q Consensus        55 ~~dVvIVGgG~-----------aGl~~A~~L~~~~~~~G~~V~v~E~~~~~   94 (515)
                      ..+|+|||+||           ++..++..|++.    |++++++--++..
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~----g~~~IliN~NPeT   50 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALRED----GYETIMVNCNPET   50 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHT----TCEEEEECCCTTS
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhc----CCeEEEEecChhh
Confidence            45799999996           788899999997    9999999988864

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=80.63  E-value=0.6  Score=41.60  Aligned_cols=36  Identities=19%  Similarity=0.325  Sum_probs=31.0

Q ss_pred             CCccEEEECC-CHHHHHHHHHHhcCCCCCCcEEEEEcCCCC
Q 010200           54 DQYDVAVVGG-GMVGMALACSLASMPLTKHLSVAIIDSNPA   93 (515)
Q Consensus        54 ~~~dVvIVGg-G~aGl~~A~~L~~~~~~~G~~V~v~E~~~~   93 (515)
                      ++.+|+|+|| |..|..++.+|.+.    |++|+++-|...
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~----G~~V~~~~R~~~   38 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISL----GHPTYVLFRPEV   38 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHT----TCCEEEECCSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhC----CCEEEEEECCCc
Confidence            3457999997 99999999999985    999999988654

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=80.41  E-value=0.61  Score=38.13  Aligned_cols=35  Identities=11%  Similarity=0.195  Sum_probs=30.3

Q ss_pred             CCccEEEECCCHHHHHHHHHHhcCCCCCCcEEEEEcCCC
Q 010200           54 DQYDVAVVGGGMVGMALACSLASMPLTKHLSVAIIDSNP   92 (515)
Q Consensus        54 ~~~dVvIVGgG~aGl~~A~~L~~~~~~~G~~V~v~E~~~   92 (515)
                      ....|+|+|+|-++-++++.|.+.    +.+|+|+-|..
T Consensus        17 ~~k~vlIlGaGGaarai~~aL~~~----~~~i~I~nR~~   51 (171)
T d1p77a1          17 PNQHVLILGAGGATKGVLLPLLQA----QQNIVLANRTF   51 (171)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHT----TCEEEEEESSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHccc----CceeeeccchH
Confidence            345799999999999999999984    78999998875