Citrus Sinensis ID: 010202
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 515 | 2.2.26 [Sep-21-2011] | |||||||
| Q9M8W9 | 508 | Pentatricopeptide repeat- | yes | no | 0.864 | 0.875 | 0.600 | 1e-165 | |
| Q9LUJ4 | 562 | Pentatricopeptide repeat- | no | no | 0.833 | 0.763 | 0.398 | 4e-87 | |
| Q3EAF8 | 599 | Pentatricopeptide repeat- | no | no | 0.852 | 0.732 | 0.283 | 4e-48 | |
| Q9LEQ7 | 598 | Pentatricopeptide repeat- | no | no | 0.852 | 0.734 | 0.283 | 7e-48 | |
| Q9LZP3 | 599 | Pentatricopeptide repeat- | no | no | 0.852 | 0.732 | 0.281 | 1e-46 | |
| Q9LFM6 | 602 | Pentatricopeptide repeat- | no | no | 0.807 | 0.691 | 0.276 | 5e-45 | |
| Q9LFQ4 | 572 | Pentatricopeptide repeat- | no | no | 0.770 | 0.694 | 0.308 | 7e-45 | |
| Q9FVX2 | 517 | Pentatricopeptide repeat- | no | no | 0.8 | 0.796 | 0.273 | 2e-44 | |
| P0C8A0 | 638 | Pentatricopeptide repeat- | no | no | 0.782 | 0.631 | 0.271 | 6e-44 | |
| Q9FH87 | 637 | Putative pentatricopeptid | no | no | 0.782 | 0.632 | 0.255 | 2e-42 |
| >sp|Q9M8W9|PP211_ARATH Pentatricopeptide repeat-containing protein At3g04130, mitochondrial OS=Arabidopsis thaliana GN=At3g04130 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 581 bits (1497), Expect = e-165, Method: Compositional matrix adjust.
Identities = 268/446 (60%), Positives = 345/446 (77%), Gaps = 1/446 (0%)
Query: 68 DVIISKVHVGSSEDEVFQSLKQDHVCNAIQPSHYLVNKLIHRFKDDWKSALGIFRWAGSC 127
+VI+ + SED+VF+ L D +C + S LV+KL+HRF+DDW+SALGI +WA SC
Sbjct: 55 NVIVGRDGDRDSEDDVFKRLSSDEICKRVNLSDGLVHKLLHRFRDDWRSALGILKWAESC 114
Query: 128 PGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDA 187
G++HSS+ Y+M VDILGK ++ D+M+ +E M +VTLNT+AK+MRRF+GAG+WE+A
Sbjct: 115 KGHKHSSDAYDMAVDILGKAKKWDRMKEFVERMRGDKLVTLNTVAKIMRRFAGAGEWEEA 174
Query: 188 VRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGW 247
V FD LG FGLEKNTE+MNLLLDTLCKE +VE AR V L+LKS I PNAHTFNIFIHGW
Sbjct: 175 VGIFDRLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLQLKSHITPNAHTFNIFIHGW 234
Query: 248 CKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNV 307
CK NRV+EA WTIQEMKGHG PCVISY+TII+ YC+Q+ F KVYE+L EM+A G PPN
Sbjct: 235 CKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNS 294
Query: 308 VTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQV 367
+TYTT+MS L +FEEA+R+ +MK G KPDS F+NCLI+TL RA R++EA V++V
Sbjct: 295 ITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRV 354
Query: 368 EMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKT 427
EMPE GV+ +TST+N+MI M+ HH +KA +L+EM C P+V T+ PLL+SCFK
Sbjct: 355 EMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKR 414
Query: 428 GKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQ 487
G E + +LL +MV KHHLSLD +TYT +I LCRAN CEWAY LF+EMI DITPR++
Sbjct: 415 GDVVE-VGKLLKEMVTKHHLSLDESTYTFLIQRLCRANMCEWAYCLFEEMISQDITPRHR 473
Query: 488 TCRLILDEVKQKHMYDAAEKIEAVMK 513
TC L+L+EVK+K+M+++AE+IE +MK
Sbjct: 474 TCLLLLEEVKKKNMHESAERIEHIMK 499
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LUJ4|PP248_ARATH Pentatricopeptide repeat-containing protein At3g22670, mitochondrial OS=Arabidopsis thaliana GN=At3g22670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 322 bits (826), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 176/442 (39%), Positives = 274/442 (61%), Gaps = 13/442 (2%)
Query: 78 SSEDEVFQSLKQDHVCNAIQPSHYLVNKLIHRFKDDWKSALGIFRWAGSCPGYEHSSEIY 137
+S ++V + L + C+ + + LV +++ RF + W A G F WA S GY HS Y
Sbjct: 114 TSHEDVVKELSK---CDVV-VTESLVLQVLRRFSNGWNQAYGFFIWANSQTGYVHSGHTY 169
Query: 138 EMMVDILGKVRQMDQMRALLEEMSKGH---IVTLNTIAKVMRRFSGAGQWEDAVRTFDEL 194
MVD+LGK R D M L+ EM+K +VTL+T++KVMRR + +G++ AV F E+
Sbjct: 170 NAMVDVLGKCRNFDLMWELVNEMNKNEESKLVTLDTMSKVMRRLAKSGKYNKAVDAFLEM 229
Query: 195 -GTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRV 253
++G++ +T MN L+D L KE +E A VFL+L I P+A TFNI IHG+CK +
Sbjct: 230 EKSYGVKTDTIAMNSLMDALVKENSIEHAHEVFLKLFDTIKPDARTFNILIHGFCKARKF 289
Query: 254 DEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTV 313
D+A+ + MK P V++Y++ +++YC++ +F +V E+L+EM+ GC PNVVTYT V
Sbjct: 290 DDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMRENGCNPNVVTYTIV 349
Query: 314 MSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENG 373
M L KS EA+ + EKMK G PD++F++ LI+ L + R ++A +++ +M G
Sbjct: 350 MHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSKTGRFKDAAEIFE-DMTNQG 408
Query: 374 VAPDTSTFNTMITMFSHHGHHEKAFHVLEEM--NKLEHCKPNVQTFHPLLKSCFKTGKTD 431
V D +NTMI+ HH E A +L+ M + E C PNV+T+ PLLK C K
Sbjct: 409 VRRDVLVYNTMISAALHHSRDEMALRLLKRMEDEEGESCSPNVETYAPLLKMCCHKKKM- 467
Query: 432 ECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRL 491
+ L LL MV K+ +S+D++TY L+I GLC + K E A L F+E + + PR TC++
Sbjct: 468 KLLGILLHHMV-KNDVSIDVSTYILLIRGLCMSGKVEEACLFFEEAVRKGMVPRDSTCKM 526
Query: 492 ILDEVKQKHMYDAAEKIEAVMK 513
++DE+++K+M +A KI+++++
Sbjct: 527 LVDELEKKNMAEAKLKIQSLVQ 548
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EAF8|PP294_ARATH Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 192 bits (489), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 130/459 (28%), Positives = 222/459 (48%), Gaps = 20/459 (4%)
Query: 25 FHSSSENCSHIVSSSPIESYCSDGARLDHHQVLCVDSPRLPD-----IDVIISKVHVGSS 79
F S S N S +ES C + + V CV+S P+ VI + +
Sbjct: 92 FSSGSSNVSDGCDEE-VESECDND---EETGVSCVESSTNPEEVERVCKVIDELFALDRN 147
Query: 80 EDEVFQSLKQDHVCNAIQPSHYLVNKLIHRFKDDWKSALGIFRWAGSCPGYEHSSEIYEM 139
+ V +K D SH L+ +++ RF+ K A F WA G+ H+S Y
Sbjct: 148 MEAVLDEMKLDL-------SHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHASRTYNS 200
Query: 140 MVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGL 199
M+ IL K RQ + M ++LEEM ++T+ T M+ F+ A + + AV F+ + +
Sbjct: 201 MMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKF 260
Query: 200 EKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWT 259
+ ET+N LLD+L + + A+ +F +LK PN T+ + ++GWC++ + EA
Sbjct: 261 KIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARI 320
Query: 260 IQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAK 319
+M HG P +++++ +++ R S +L M+++G PNV +YT ++ K
Sbjct: 321 WNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCK 380
Query: 320 SGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTS 379
E AI + M G +PD+ + CLI G ++ + VY EM E G PD
Sbjct: 381 QSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKL-DTVYELLKEMQEKGHPPDGK 439
Query: 380 TFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLD 439
T+N +I + ++ E + +M + E +P++ TF+ ++KS F + E + D
Sbjct: 440 TYNALIKLMANQKMPEHGTRIYNKMIQNE-IEPSIHTFNMIMKSYF-VARNYEMGRAVWD 497
Query: 440 DMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMI 478
+M+ K + D +YT++I GL K A +EM+
Sbjct: 498 EMIKK-GICPDDNSYTVLIRGLISEGKSREACRYLEEML 535
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LEQ7|PP382_ARATH Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 192 bits (487), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 130/459 (28%), Positives = 221/459 (48%), Gaps = 20/459 (4%)
Query: 25 FHSSSENCSHIVSSSPIESYCSDGARLDHHQVLCVDSPRLPD-----IDVIISKVHVGSS 79
F S S N S +ES C + + V CV+S P+ VI + +
Sbjct: 91 FSSGSSNVSDGCDEE-VESECDND---EETGVSCVESSTNPEEVERVCKVIDELFALDRN 146
Query: 80 EDEVFQSLKQDHVCNAIQPSHYLVNKLIHRFKDDWKSALGIFRWAGSCPGYEHSSEIYEM 139
+ V +K D SH L+ +++ RF+ K A F WA G+ H S Y
Sbjct: 147 MEAVLDEMKLDL-------SHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNS 199
Query: 140 MVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGL 199
M+ IL K RQ + M ++LEEM ++T+ T M+ F+ A + + AV F+ + +
Sbjct: 200 MMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKF 259
Query: 200 EKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWT 259
+ ET+N LLD+L + + A+ +F +LK PN T+ + ++GWC++ + EA
Sbjct: 260 KIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARI 319
Query: 260 IQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAK 319
+M HG P +++++ +++ R S +L M+++G PNV +YT ++ K
Sbjct: 320 WNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCK 379
Query: 320 SGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTS 379
E AI + M G +PD+ + CLI G ++ + VY EM E G PD
Sbjct: 380 QSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKL-DTVYELLKEMQEKGHPPDGK 438
Query: 380 TFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLD 439
T+N +I + ++ E + +M + E +P++ TF+ ++KS F + E + D
Sbjct: 439 TYNALIKLMANQKMPEHGTRIYNKMIQNE-IEPSIHTFNMIMKSYF-VARNYEMGRAVWD 496
Query: 440 DMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMI 478
+M+ K + D +YT++I GL K A +EM+
Sbjct: 497 EMIKK-GICPDDNSYTVLIRGLISEGKSREACRYLEEML 534
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LZP3|PP293_ARATH Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 187 bits (476), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 129/459 (28%), Positives = 221/459 (48%), Gaps = 20/459 (4%)
Query: 25 FHSSSENCSHIVSSSPIESYCSDGARLDHHQVLCVDSPRLPD-----IDVIISKVHVGSS 79
F S S N S +ES C + + V CV+S P+ VI + +
Sbjct: 92 FSSGSSNVSDGCDEE-VESECDND---EETGVSCVESSTNPEEVERVCKVIDELFALDRN 147
Query: 80 EDEVFQSLKQDHVCNAIQPSHYLVNKLIHRFKDDWKSALGIFRWAGSCPGYEHSSEIYEM 139
+ V +K D SH L+ +++ RF+ K A F WA G+ H S Y
Sbjct: 148 MEAVLDEMKLDL-------SHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNS 200
Query: 140 MVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGL 199
M+ IL K RQ + M ++LEEM ++T+ T M+ F+ A + + AV F+ + +
Sbjct: 201 MMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKF 260
Query: 200 EKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWT 259
+ ET+N LLD+L + + A+ +F +LK PN T+ + ++GWC++ + EA
Sbjct: 261 KIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARI 320
Query: 260 IQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAK 319
+M G P +++++ +++ R S +L M+++G PNV +YT ++ K
Sbjct: 321 WNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCK 380
Query: 320 SGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTS 379
E AI + M G +PD+ + CLI G ++ + VY EM E G PD
Sbjct: 381 QSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKL-DTVYELLKEMQEKGHPPDGK 439
Query: 380 TFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLD 439
T+N +I + ++ E A + +M + E +P++ TF+ ++KS F + E + +
Sbjct: 440 TYNALIKLMANQKMPEHATRIYNKMIQNE-IEPSIHTFNMIMKSYF-MARNYEMGRAVWE 497
Query: 440 DMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMI 478
+M+ K + D +YT++I GL K A +EM+
Sbjct: 498 EMIKK-GICPDDNSYTVLIRGLIGEGKSREACRYLEEML 535
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFM6|PP375_ARATH Pentatricopeptide repeat-containing protein At5g11310, mitochondrial OS=Arabidopsis thaliana GN=At5g11310 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 182 bits (462), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 120/434 (27%), Positives = 221/434 (50%), Gaps = 18/434 (4%)
Query: 95 AIQPSHYLVNKLIHRFKDDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMR 154
I+PS LV+ L R +F+WA PG+ S +++ +V+ L K R+ +
Sbjct: 96 GIEPSVELVHALFDRLSSSPMLLHSVFKWAEMKPGFTLSPSLFDSVVNSLCKAREFEIAW 155
Query: 155 ALLEEMSKG----HIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTET----M 206
+L+ + + ++V+ +T ++RR++ AG + A+R F+ ++ + T +
Sbjct: 156 SLVFDRVRSDEGSNLVSADTFIVLIRRYARAGMVQQAIRAFEFARSYEPVCKSATELRLL 215
Query: 207 NLLLDTLCKEGKVELARSVFLE-----LKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQ 261
+LLD LCKEG V A S++LE + S P+ FNI ++GW + ++ +A+ +
Sbjct: 216 EVLLDALCKEGHVREA-SMYLERIGGTMDSNWVPSVRIFNILLNGWFRSRKLKQAEKLWE 274
Query: 262 EMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSG 321
EMK P V++Y T+I+ YCR E+L+EM+ N + + ++ L ++G
Sbjct: 275 EMKAMNVKPTVVTYGTLIEGYCRMRRVQIAMEVLEEMKMAEMEINFMVFNPIIDGLGEAG 334
Query: 322 DFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTF 381
EA+ + E+ + S P +N L+ +A + A + ++ M GV P T+T+
Sbjct: 335 RLSEALGMMERFFVCESGPTIVTYNSLVKNFCKAGDLPGASKILKMMM-TRGVDPTTTTY 393
Query: 382 NTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDM 441
N FS H E+ ++ ++ + H P+ T+H +LK + GK + Q+ +M
Sbjct: 394 NHFFKYFSKHNKTEEGMNLYFKLIEAGHS-PDRLTYHLILKMLCEDGKLSLAM-QVNKEM 451
Query: 442 VNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKHM 501
N+ + D+ T T++IH LCR E A+ F + I P+Y T ++I + ++ K M
Sbjct: 452 KNR-GIDPDLLTTTMLIHLLCRLEMLEEAFEEFDNAVRRGIIPQYITFKMIDNGLRSKGM 510
Query: 502 YDAAEKIEAVMKKL 515
D A+++ ++M L
Sbjct: 511 SDMAKRLSSLMSSL 524
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFQ4|PP383_ARATH Pentatricopeptide repeat-containing protein At5g15010, mitochondrial OS=Arabidopsis thaliana GN=At5g15010 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 182 bits (461), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 127/412 (30%), Positives = 208/412 (50%), Gaps = 15/412 (3%)
Query: 77 GSSEDEVFQSLKQDHVCNAIQPSHYLVNKLIHRFKDDWKSALGIFRWAGSCPGYEHSSEI 136
GS E+ L++ C+ ++PS+ LV +++ R ++DW++A F WAG GY S
Sbjct: 108 GSDRKELRNKLEE---CD-VKPSNELVVEILSRVRNDWETAFTFFVWAGKQQGYVRSVRE 163
Query: 137 YEMMVDILGKVRQMDQMRALLEEMSK--GHIVTLNTIAKVMRRFSGAGQWEDAVRTFDEL 194
Y M+ ILGK+R+ D L++EM K +V T+ ++R++ A+ TF
Sbjct: 164 YHSMISILGKMRKFDTAWTLIDEMRKFSPSLVNSQTLLIMIRKYCAVHDVGKAINTFHAY 223
Query: 195 GTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCK-INRV 253
F LE + LL LC+ V A + K P +A +FNI ++GWC I
Sbjct: 224 KRFKLEMGIDDFQSLLSALCRYKNVSDAGHLIFCNKDKYPFDAKSFNIVLNGWCNVIGSP 283
Query: 254 DEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTV 313
EA+ EM G V+SYS++I Y + + +KV +L D M+ + P+ Y V
Sbjct: 284 REAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKECIEPDRKVYNAV 343
Query: 314 MSYLAKSGDFEEAIRITEKM-KIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPEN 372
+ LAK+ EA + + M + G +P+ +N LI L +A + +EA V+ EM E
Sbjct: 344 VHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAKQVFD-EMLEK 402
Query: 373 GVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDE 432
G+ P T++ + + E+ F +L +M K+ C+P V+T+ L++ + D
Sbjct: 403 GLFPTIRTYHAFMRILR---TGEEVFELLAKMRKM-GCEPTVETYIMLIRKLCRWRDFDN 458
Query: 433 CLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITP 484
L LL D + + + D+++Y ++IHGL K E AY +KEM + P
Sbjct: 459 VL--LLWDEMKEKTVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKDKGMRP 508
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 180 bits (457), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 115/421 (27%), Positives = 206/421 (48%), Gaps = 9/421 (2%)
Query: 64 LPDIDVIISKVHVGSSEDEVFQSLKQDHVCNAIQPSHYLVNKLIHRFKDDWKSALGIFRW 123
+ D+ ISKV + S + + +L Q + ++ S +V +++RF++ F+W
Sbjct: 68 VADVAKNISKVLMSSPQLVLDSALDQ----SGLRVSQEVVEDVLNRFRNAGLLTYRFFQW 123
Query: 124 AGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQ 183
+ YEHS Y MM++ K+RQ M L+ M K ++ + T VMR+++ A +
Sbjct: 124 SEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRKKKMLNVETFCIVMRKYARAQK 183
Query: 184 WEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIF 243
++A+ F+ + + L N N LL LCK V A+ VF ++ P++ T++I
Sbjct: 184 VDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENMRDRFTPDSKTYSIL 243
Query: 244 IHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGC 303
+ GW K + +A+ +EM GCHP +++YS ++ C+ + ++ M C
Sbjct: 244 LEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSIC 303
Query: 304 PPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVY 363
P Y+ ++ EEA+ +M+ G K D FN LI +A+R++ VY
Sbjct: 304 KPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKN-VY 362
Query: 364 VYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKS 423
EM GV P++ + N ++ G ++AF V +M K+ C+P+ T+ ++K
Sbjct: 363 RVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIKV--CEPDADTYTMVIK- 419
Query: 424 CFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDIT 483
F K E ++ M K + + T++++I+GLC + A +L +EMI I
Sbjct: 420 MFCEKKEMETADKVWKYM-RKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGIR 478
Query: 484 P 484
P
Sbjct: 479 P 479
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 179 bits (453), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 112/412 (27%), Positives = 206/412 (50%), Gaps = 9/412 (2%)
Query: 102 LVNKLIHRFKDDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMS 161
L+ +++ R D F WA PGY HS E+ + MV IL K+RQ + L+EEM
Sbjct: 99 LIIRVLSRCGDAGNLGYRFFLWATKQPGYFHSYEVCKSMVMILSKMRQFGAVWGLIEEMR 158
Query: 162 KGH--IVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKV 219
K + ++ +MRRF+ A + AV DE+ +GLE + LLD LCK G V
Sbjct: 159 KTNPELIEPELFVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSV 218
Query: 220 ELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTII 279
+ A VF +++ PPN F ++GWC+ ++ EA+ + +MK G P ++ ++ ++
Sbjct: 219 KEASKVFEDMREKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLL 278
Query: 280 QSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKS-GDFEEAIRITEKMKIVGS 338
Y + Y+L+++M+ +G PNV YT ++ L ++ +EA+R+ +M+ G
Sbjct: 279 SGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGC 338
Query: 339 KPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAF 398
+ D + LI + + + V +M + GV P T+ ++ E+
Sbjct: 339 EADIVTYTALISGFCKWGMIDKGYSVLD-DMRKKGVMPSQVTYMQIMVAHEKKEQFEECL 397
Query: 399 HVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVI 458
++E+M K C P++ ++ +++ K G+ E + +L ++M + LS + T+ ++I
Sbjct: 398 ELIEKM-KRRGCHPDLLIYNVVIRLACKLGEVKEAV-RLWNEM-EANGLSPGVDTFVIMI 454
Query: 459 HGLCRANKCEWAYLLFKEMIGHDI--TPRYQTCRLILDEVKQKHMYDAAEKI 508
+G A FKEM+ I P+Y T + +L+ + + + A+ +
Sbjct: 455 NGFTSQGFLIEACNHFKEMVSRGIFSAPQYGTLKSLLNNLVRDDKLEMAKDV 506
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FH87|PP447_ARATH Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 174 bits (441), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 105/411 (25%), Positives = 208/411 (50%), Gaps = 8/411 (1%)
Query: 102 LVNKLIHRFKDDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMS 161
L+ ++++R D F WA P Y HS E+Y+ MV IL K+RQ + L+EEM
Sbjct: 115 LIERVLNRCGDAGNLGYRFFVWAAKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMR 174
Query: 162 KGH--IVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKV 219
K + ++ +++RF+ A + A+ DE+ FG E + LLD LCK G V
Sbjct: 175 KENPQLIEPELFVVLVQRFASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSV 234
Query: 220 ELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTII 279
+ A +F +++ P N F ++GWC++ ++ EA++ + +M G P ++ Y+ ++
Sbjct: 235 KDAAKLFEDMRMRFPVNLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLL 294
Query: 280 QSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSK 339
Y + Y+LL +M+ +G PN YT ++ L K EEA+++ +M+ +
Sbjct: 295 SGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECE 354
Query: 340 PDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFH 399
D + L+ + ++ + Y+ +M + G+ P T+ ++ E+
Sbjct: 355 ADVVTYTALVSGFCKWGKI-DKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEECLE 413
Query: 400 VLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIH 459
++E+M ++E+ P++ ++ +++ K G+ E + +L ++M ++ LS + T+ ++I+
Sbjct: 414 LMEKMRQIEY-HPDIGIYNVVIRLACKLGEVKEAV-RLWNEM-EENGLSPGVDTFVIMIN 470
Query: 460 GLCRANKCEWAYLLFKEMIGHDI--TPRYQTCRLILDEVKQKHMYDAAEKI 508
GL A FKEM+ + +Y T +L+L+ V + + A+ +
Sbjct: 471 GLASQGCLLEASDHFKEMVTRGLFSVSQYGTLKLLLNTVLKDKKLEMAKDV 521
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 515 | ||||||
| 255547888 | 466 | pentatricopeptide repeat-containing prot | 0.897 | 0.991 | 0.686 | 0.0 | |
| 449435037 | 519 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 0.992 | 0.614 | 0.0 | |
| 225425882 | 496 | PREDICTED: pentatricopeptide repeat-cont | 0.869 | 0.903 | 0.683 | 0.0 | |
| 449494995 | 488 | PREDICTED: pentatricopeptide repeat-cont | 0.873 | 0.922 | 0.662 | 0.0 | |
| 224110770 | 452 | predicted protein [Populus trichocarpa] | 0.866 | 0.986 | 0.680 | 0.0 | |
| 356560497 | 490 | PREDICTED: pentatricopeptide repeat-cont | 0.871 | 0.916 | 0.625 | 1e-175 | |
| 357440039 | 661 | Pentatricopeptide repeat-containing prot | 0.910 | 0.709 | 0.592 | 1e-170 | |
| 222423065 | 508 | AT3G04130 [Arabidopsis thaliana] | 0.864 | 0.875 | 0.600 | 1e-163 | |
| 18396782 | 508 | pentatricopeptide repeat-containing prot | 0.864 | 0.875 | 0.600 | 1e-163 | |
| 6721172 | 572 | hypothetical protein [Arabidopsis thalia | 0.864 | 0.777 | 0.600 | 1e-162 |
| >gi|255547888|ref|XP_002515001.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223546052|gb|EEF47555.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/462 (68%), Positives = 380/462 (82%)
Query: 54 HQVLCVDSPRLPDIDVIISKVHVGSSEDEVFQSLKQDHVCNAIQPSHYLVNKLIHRFKDD 113
HQ +DS R DIDVI++K+ VGSS DE+ QSL D VCN+I SH LV+KL+ RFKDD
Sbjct: 5 HQEQFLDSKRQSDIDVIVAKIRVGSSHDEIVQSLVHDEVCNSIHLSHELVDKLLFRFKDD 64
Query: 114 WKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAK 173
WKSALG+FRWA S GY+HS E Y+ MVDI+GK++QMDQM LLEEM KG VTL T+ K
Sbjct: 65 WKSALGVFRWAESRAGYKHSPEAYDTMVDIMGKMKQMDQMEFLLEEMEKGQHVTLKTVGK 124
Query: 174 VMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCI 233
MRRF+GA QWE+ +R FD+LGTFGLEKNTE+MNLLLDTLCKE KVELAR +FL+LKS I
Sbjct: 125 AMRRFAGARQWENVLRVFDKLGTFGLEKNTESMNLLLDTLCKERKVELAREIFLDLKSHI 184
Query: 234 PPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYE 293
PNA+TFNIFIHGWCK+NRV+EA WTIQEMKGHGC PCVISYSTI+Q YC + NFSKVYE
Sbjct: 185 SPNANTFNIFIHGWCKVNRVEEAYWTIQEMKGHGCTPCVISYSTIVQFYCHRSNFSKVYE 244
Query: 294 LLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLG 353
LLDEM+AQG PNVVTYT+VMS LAKS ++EEA++I ++MK VG KPD+ F+N LI+TLG
Sbjct: 245 LLDEMEAQGLIPNVVTYTSVMSALAKSEEYEEALQIAQRMKSVGCKPDTLFYNSLIHTLG 304
Query: 354 RASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPN 413
+A R +EA+ V++VEMP GV P+TST+N+MI M HH KA ++L+E+ CKP+
Sbjct: 305 KAGRPEEAIQVFEVEMPNTGVPPNTSTYNSMIAMLCHHSQERKALNLLKEIEASIICKPD 364
Query: 414 VQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLL 473
VQT++PLLKSCFK G D LSQLLDDMV KHHLSLD + YTL++HGLCRANKCEWAY L
Sbjct: 365 VQTYYPLLKSCFKAGSIDSLLSQLLDDMVKKHHLSLDFSAYTLLVHGLCRANKCEWAYCL 424
Query: 474 FKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVMKKL 515
F+EMIG D+TP+YQTCRL+LDEVK KHMYDAA+KIE VM+K+
Sbjct: 425 FEEMIGKDMTPKYQTCRLLLDEVKLKHMYDAAQKIEIVMQKI 466
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449435037|ref|XP_004135302.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/519 (61%), Positives = 406/519 (78%), Gaps = 4/519 (0%)
Query: 1 MICHLQKYLKQARIPLNPLTSRIRFHSSSENCSHIVSSS----PIESYCSDGARLDHHQV 56
M+ H+QK K L+ S FH SS+ CS +S + P+E S GAR +V
Sbjct: 1 MLLHIQKSSKGIWGVLDRCKSFAYFHVSSQRCSDALSPANILYPLEPNISVGARDLQQRV 60
Query: 57 LCVDSPRLPDIDVIISKVHVGSSEDEVFQSLKQDHVCNAIQPSHYLVNKLIHRFKDDWKS 116
+ DID II+KV VGSSEDEVFQSL QD VCN+IQ SH LV KL+ RFKDDWKS
Sbjct: 61 PSEFQKKKSDIDFIIAKVQVGSSEDEVFQSLLQDPVCNSIQLSHDLVYKLLQRFKDDWKS 120
Query: 117 ALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMR 176
ALG+FRWA S G++H+ ++Y++++D LGK +Q+ +MR +LEEM + +VTL+T+AK MR
Sbjct: 121 ALGVFRWAESLSGFKHTPDLYDILIDTLGKTKQLVKMRGMLEEMKEARLVTLDTVAKAMR 180
Query: 177 RFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPN 236
RF+GAGQWE+AVR FD+L T+GLEKNTE+MN+LLDTLCKE KVE AR ++LELKS I PN
Sbjct: 181 RFAGAGQWENAVRIFDDLETYGLEKNTESMNVLLDTLCKEKKVEKARQMYLELKSHIAPN 240
Query: 237 AHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLD 296
A+TFN+FIHGWCK+N++DEA WT++EMKG+G PCVISYSTII YC + NF+KVYELLD
Sbjct: 241 ANTFNMFIHGWCKVNKIDEAHWTLEEMKGYGHRPCVISYSTIILFYCHRCNFNKVYELLD 300
Query: 297 EMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRAS 356
EM AQGCP NV+TYTT+M L KS +FEEA++I E+MK G +PD+ F+NCLI+TLGRA
Sbjct: 301 EMDAQGCPANVITYTTIMCSLTKSEEFEEALQIAERMKSAGYEPDTLFYNCLIHTLGRAG 360
Query: 357 RVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQT 416
+V+EA++V++VEMP V P+TST+N+MI M+ EKA +LEEM K EHCKP+VQT
Sbjct: 361 KVREAIHVFEVEMPSKSVLPNTSTYNSMIAMYCRRAREEKAMKLLEEMQKSEHCKPDVQT 420
Query: 417 FHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKE 476
++PLLKSCF+TGKTD LS LLD+M+NKHHLSLDI+TY+L+IHGLCRANKC+WAY LF++
Sbjct: 421 YYPLLKSCFRTGKTDYDLSNLLDEMINKHHLSLDISTYSLLIHGLCRANKCDWAYQLFEK 480
Query: 477 MIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVMKKL 515
MI DI PRY TC+L+LDE KQK+M A++IE +MKKL
Sbjct: 481 MISQDIKPRYLTCQLLLDEFKQKNMDGVADRIEGIMKKL 519
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225425882|ref|XP_002266563.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130, mitochondrial [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/449 (68%), Positives = 375/449 (83%), Gaps = 1/449 (0%)
Query: 67 IDVIISKVHVGSSEDEVFQSLKQDHVCNAIQPSHYLVNKLIHRFKDDWKSALGIFRWAGS 126
ID+I+S++ GSS+DEVF+SL D CNAI S LV+ L+HRFKDDWKSALG+FRWA S
Sbjct: 45 IDIIVSRIREGSSDDEVFKSLVHDEACNAIPMSQNLVDVLLHRFKDDWKSALGLFRWAES 104
Query: 127 CPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWED 186
GYEH+ E Y+MMVDILGK++Q+D+MRAL+EEM +G++V L+T+AK MRR +GAG+WED
Sbjct: 105 RLGYEHAPEAYDMMVDILGKLKQVDKMRALMEEMRQGNLVRLSTVAKAMRRLAGAGEWED 164
Query: 187 AVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHG 246
AVR FD+LG F LEKNTE+MNLLLDTLCKE KVE AR++FLELK I PN HTFNIFIHG
Sbjct: 165 AVRVFDDLGNFELEKNTESMNLLLDTLCKERKVEQARAIFLELKPHISPNTHTFNIFIHG 224
Query: 247 WCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPN 306
WCK NRVDEA+WTIQEMKGHGC PCVISYSTIIQSYCRQ NF KVYELLD+MQAQGC PN
Sbjct: 225 WCKANRVDEAEWTIQEMKGHGCRPCVISYSTIIQSYCRQSNFRKVYELLDDMQAQGCAPN 284
Query: 307 VVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQ 366
VVTYTT+M L K FEEA++I E+M+ VG KPD+ F+N LI+TLGRA +++EAV V++
Sbjct: 285 VVTYTTIMCSLTKVEQFEEALQIAERMRSVGCKPDTLFYNALIHTLGRAGQLREAVRVFE 344
Query: 367 VEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFK 426
VEMP+ GV P+TST+N+MI MF HH +KA ++L E+ CKP++QT++P+LKSCFK
Sbjct: 345 VEMPKTGVPPNTSTYNSMIAMFCHHSQEQKALNLLREIENSTFCKPDIQTYYPVLKSCFK 404
Query: 427 TGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRY 486
TGK D LS LDDMVNKHHLSLD++ YTL+IHGLCRANKCEW Y LF+EM+G ITPRY
Sbjct: 405 TGKIDS-LSNFLDDMVNKHHLSLDVSAYTLLIHGLCRANKCEWGYNLFEEMVGKAITPRY 463
Query: 487 QTCRLILDEVKQKHMYDAAEKIEAVMKKL 515
+TC L+LDE+KQK+M+DAAE+IE MK++
Sbjct: 464 KTCALLLDEIKQKNMHDAAERIEVFMKQM 492
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449494995|ref|XP_004159705.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 298/450 (66%), Positives = 376/450 (83%)
Query: 66 DIDVIISKVHVGSSEDEVFQSLKQDHVCNAIQPSHYLVNKLIHRFKDDWKSALGIFRWAG 125
DID II+KV VGSSEDEVFQSL QD VCN+IQ SH LV KL+ RFKDDWKSALG+FRWA
Sbjct: 39 DIDFIIAKVQVGSSEDEVFQSLLQDPVCNSIQLSHDLVYKLLQRFKDDWKSALGVFRWAE 98
Query: 126 SCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWE 185
S G++H+ ++Y++++D LGK +Q+ +MR +LEEM + +VTL+T+AK MRRF+GAGQWE
Sbjct: 99 SLSGFKHTPDLYDILIDTLGKTKQLVKMRGMLEEMKEARLVTLDTVAKAMRRFAGAGQWE 158
Query: 186 DAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIH 245
+AVR FD+L T+GLEKNTE+MN+LLDTLCKE KVE AR ++LELKS I PNA+TFN+FIH
Sbjct: 159 NAVRIFDDLETYGLEKNTESMNVLLDTLCKEKKVEKARQMYLELKSHIAPNANTFNMFIH 218
Query: 246 GWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPP 305
GWCK+N++DEA WT++EMKG+G PCVISYSTII YC + NF+KVYELLDEM AQGCP
Sbjct: 219 GWCKVNKIDEAHWTLEEMKGYGHRPCVISYSTIILFYCHRCNFNKVYELLDEMDAQGCPA 278
Query: 306 NVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVY 365
NV+TYTT+M L KS +FEEA++I E+MK G +PD+ F+NCLI+TLGRA +V+EA++V+
Sbjct: 279 NVITYTTIMCSLTKSEEFEEALQIAERMKSAGYEPDTLFYNCLIHTLGRAGKVREAIHVF 338
Query: 366 QVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCF 425
+VEMP V P+TST+N+MI M+ EKA +LEEM K EHCKP+VQT++PLLKSCF
Sbjct: 339 EVEMPSKSVLPNTSTYNSMIAMYCRRAREEKAMKLLEEMQKSEHCKPDVQTYYPLLKSCF 398
Query: 426 KTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPR 485
+TGKTD LS LLD+M+NKHHLSLDI+TY+L+IHGLCRANKC+WAY LF++MI DI PR
Sbjct: 399 RTGKTDYDLSNLLDEMINKHHLSLDISTYSLLIHGLCRANKCDWAYQLFEKMISQDIKPR 458
Query: 486 YQTCRLILDEVKQKHMYDAAEKIEAVMKKL 515
Y TC+L+LDE KQK+M A++IE +MKKL
Sbjct: 459 YLTCQLLLDEFKQKNMDGVADRIEGIMKKL 488
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224110770|ref|XP_002315631.1| predicted protein [Populus trichocarpa] gi|222864671|gb|EEF01802.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/447 (68%), Positives = 360/447 (80%), Gaps = 1/447 (0%)
Query: 67 IDVIISKVHVGSSEDEVFQSLKQDHVCNAIQPSHYLVNKLIHRFKDDWKSALGIFRWAGS 126
++++ +K VGSS DE+ SL + VC+ I+ S+ LV+KL+ RFKDDWKSALG+FRWAG
Sbjct: 7 VNLVAAKARVGSSPDEILLSLADEQVCDNIEVSNDLVDKLLLRFKDDWKSALGVFRWAGL 66
Query: 127 CPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWED 186
PGY+H E Y+MMVDILGK++QMDQMR LLEEM++ H+VTLNT+ K MRRFSGAG+WED
Sbjct: 67 RPGYKHRPEAYDMMVDILGKMKQMDQMRELLEEMNRNHLVTLNTVGKAMRRFSGAGKWED 126
Query: 187 AVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHG 246
AVR FDELGTFGLEKN E+MNLLLDTLCKEGKVE AR++FLELKS I PNAHTFNIFIHG
Sbjct: 127 AVRMFDELGTFGLEKNAESMNLLLDTLCKEGKVEQARAIFLELKSHILPNAHTFNIFIHG 186
Query: 247 WCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPN 306
WCK N VDEA WT+QEMKGH PCVISYSTII YCRQ+NFSKVYELLDEM+AQGCPPN
Sbjct: 187 WCKANLVDEAHWTLQEMKGHAFRPCVISYSTIILFYCRQHNFSKVYELLDEMEAQGCPPN 246
Query: 307 VVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQ 366
VVTYTT++ +LAKS + EEA+++T++MK G KPD+ FFN LIY LGRA R QEAV V++
Sbjct: 247 VVTYTTIIVFLAKSQNTEEALQLTQRMKSAGCKPDTPFFNSLIYILGRAGRFQEAVDVFE 306
Query: 367 VEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFK 426
EMP GV+ DTST+N+MI M HHGH KA +L EM K + QTF+PLLKSC +
Sbjct: 307 KEMPNAGVSRDTSTYNSMIAMLCHHGHVSKALSLLREMETSAPFKLDGQTFYPLLKSCLR 366
Query: 427 TGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRY 486
TG + LSQLLDDMV KH LSLD + Y L+IHGLCRANKC+WAY LF+EMI DI P+Y
Sbjct: 367 TGDMN-LLSQLLDDMVKKHQLSLDRSAYALLIHGLCRANKCQWAYHLFEEMISKDIVPKY 425
Query: 487 QTCRLILDEVKQKHMYDAAEKIEAVMK 513
QTC ++L+EVK K MYD AEKIE MK
Sbjct: 426 QTCHMLLEEVKLKSMYDTAEKIEDFMK 452
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356560497|ref|XP_003548528.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04130, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 622 bits (1603), Expect = e-175, Method: Compositional matrix adjust.
Identities = 281/449 (62%), Positives = 362/449 (80%)
Query: 67 IDVIISKVHVGSSEDEVFQSLKQDHVCNAIQPSHYLVNKLIHRFKDDWKSALGIFRWAGS 126
+D++ +K+ GSSE+E +L D C+ I S LV++L+ R+KDDWKSALG+FRWA S
Sbjct: 42 VDILTAKLGKGSSEEETLHTLFNDQACDFIPLSRDLVHRLLWRYKDDWKSALGVFRWASS 101
Query: 127 CPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWED 186
P + HSSE Y+MMVDILG+++ M+++R LLEEM +G +V +NT+AK MRRF GAGQW D
Sbjct: 102 RPSFRHSSESYDMMVDILGRMKVMEKLRDLLEEMREGGLVNMNTVAKAMRRFVGAGQWVD 161
Query: 187 AVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHG 246
AVR FD+L GLEKNTE+MNLLLDTLCKE V+ AR +FLELK I PNAHTFNIFIHG
Sbjct: 162 AVRIFDDLQALGLEKNTESMNLLLDTLCKEKFVQQAREIFLELKQHIAPNAHTFNIFIHG 221
Query: 247 WCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPN 306
WCKI RVDEA WTIQEMKG+G HPCVISYST+IQ YC++ NFS+VYELLDEMQAQGC N
Sbjct: 222 WCKICRVDEAHWTIQEMKGYGFHPCVISYSTLIQCYCQEGNFSRVYELLDEMQAQGCSAN 281
Query: 307 VVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQ 366
V+TYT++M L K+ FEEA+++ E+M+ G +PD+ FFN LI+TLGRA R+ +A V++
Sbjct: 282 VITYTSIMCALGKAKKFEEALKVPERMRSSGCRPDTLFFNSLIHTLGRAGRLDDAADVFK 341
Query: 367 VEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFK 426
VEMP+ GV+P+TST+N+MI+MF +H ++A +L+EM CKP+ QT+HPL+KSCF+
Sbjct: 342 VEMPKAGVSPNTSTYNSMISMFCYHAQEKRALEILKEMENSGGCKPDAQTYHPLIKSCFR 401
Query: 427 TGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRY 486
+GK D LS++L+DM+NK HLSLD++TYTL+IHGLCR ++C WA+ LF+EMI DI PRY
Sbjct: 402 SGKIDGVLSEILNDMINKQHLSLDLSTYTLLIHGLCREDRCNWAFSLFEEMIDQDIIPRY 461
Query: 487 QTCRLILDEVKQKHMYDAAEKIEAVMKKL 515
+TCRL+LDEVKQK+MY AAEKIE +MKKL
Sbjct: 462 RTCRLLLDEVKQKNMYQAAEKIEDLMKKL 490
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357440039|ref|XP_003590297.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355479345|gb|AES60548.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust.
Identities = 279/471 (59%), Positives = 364/471 (77%), Gaps = 2/471 (0%)
Query: 39 SPIESYCSDGARLDHHQVLCVDSPRLPDIDVIISKVHVGSSEDEVFQSLKQDHVCNAIQP 98
S + +Y + AR H+ D R +D++ +K+ G+SED++ QSL D N I
Sbjct: 27 SSLATYHAAEARDFWHKEQTQDLTR--SVDILTTKIGKGNSEDDILQSLISDEGVNGIHL 84
Query: 99 SHYLVNKLIHRFKDDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLE 158
S L+N+L+ R+KDDWKSAL IFRWAGS ++HS + Y+MMVDILG+++ MD+MR +LE
Sbjct: 85 SENLINRLLFRYKDDWKSALAIFRWAGSHSNFKHSQQSYDMMVDILGRMKAMDKMREILE 144
Query: 159 EMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGK 218
EM + ++TLNTIAKVMRRF GA QW+DAVR FD+L GLEKNTE+MN+LLDTLCKE
Sbjct: 145 EMRQESLITLNTIAKVMRRFVGARQWKDAVRIFDDLQFLGLEKNTESMNVLLDTLCKEKF 204
Query: 219 VELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTI 278
VE AR ++LELK I PNAHTFNI IHGWC I RV+EA WTIQEMKG+GC PCVISYSTI
Sbjct: 205 VEQAREIYLELKHYIAPNAHTFNILIHGWCNIRRVEEAHWTIQEMKGYGCRPCVISYSTI 264
Query: 279 IQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGS 338
IQ YC++ NF +VY+LLDEMQAQ C PNVVTYTT+M LAK+ FEEA+++ E+M VG
Sbjct: 265 IQCYCQEQNFDRVYDLLDEMQAQNCSPNVVTYTTIMCALAKAEKFEEALQVVERMNAVGC 324
Query: 339 KPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAF 398
+PD+ FFN LIYTLGRA R+ +A +V++V MP+ VAP+TST+N+MI+MF ++ E+AF
Sbjct: 325 RPDTLFFNSLIYTLGRAGRIDDATHVFKVAMPKASVAPNTSTYNSMISMFCYYAQEERAF 384
Query: 399 HVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVI 458
+L+EM K CKP++QT+HPL+KSCFK + D L+ +L+DMVNK+H+ LD++TYTL+I
Sbjct: 385 GILKEMEKSGLCKPDIQTYHPLIKSCFKMREIDTWLNDILNDMVNKYHIGLDLSTYTLLI 444
Query: 459 HGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIE 509
HGL RA++C+WA+ LF+EM DI PRY+TCRL+LDEVKQK+M+ A KIE
Sbjct: 445 HGLYRADRCKWAFDLFEEMADQDIVPRYKTCRLLLDEVKQKNMHLAVVKIE 495
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|222423065|dbj|BAH19514.1| AT3G04130 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 581 bits (1497), Expect = e-163, Method: Compositional matrix adjust.
Identities = 268/446 (60%), Positives = 345/446 (77%), Gaps = 1/446 (0%)
Query: 68 DVIISKVHVGSSEDEVFQSLKQDHVCNAIQPSHYLVNKLIHRFKDDWKSALGIFRWAGSC 127
+VI+ + SED+VF+ L D +C + S LV+KL+HRF+DDW+SALGI +WA SC
Sbjct: 55 NVIVGRDGDRDSEDDVFKRLSSDEICKRVNLSDGLVHKLLHRFRDDWRSALGILKWAESC 114
Query: 128 PGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDA 187
G++HSS+ Y+M VDILGK ++ D+M+ +E M +VTLNT+AK+MRRF+GAG+WE+A
Sbjct: 115 KGHKHSSDAYDMAVDILGKAKKWDRMKEFVERMRGDKLVTLNTVAKIMRRFAGAGEWEEA 174
Query: 188 VRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGW 247
V FD LG FGLEKNTE+MNLLLDTLCKE +VE AR V L+LKS I PNAHTFNIFIHGW
Sbjct: 175 VGIFDRLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLQLKSHITPNAHTFNIFIHGW 234
Query: 248 CKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNV 307
CK NRV+EA WTIQEMKGHG PCVISY+TII+ YC+Q+ F KVYE+L EM+A G PPN
Sbjct: 235 CKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNS 294
Query: 308 VTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQV 367
+TYTT+MS L +FEEA+R+ +MK G KPDS F+NCLI+TL RA R++EA V++V
Sbjct: 295 ITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRV 354
Query: 368 EMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKT 427
EMPE GV+ +TST+N+MI M+ HH +KA +L+EM C P+V T+ PLL+SCFK
Sbjct: 355 EMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKR 414
Query: 428 GKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQ 487
G E + +LL +MV KHHLSLD +TYT +I LCRAN CEWAY LF+EMI DITPR++
Sbjct: 415 GDVVE-VGKLLKEMVTKHHLSLDESTYTFLIQRLCRANMCEWAYCLFEEMISQDITPRHR 473
Query: 488 TCRLILDEVKQKHMYDAAEKIEAVMK 513
TC L+L+EVK+K+M+++AE+IE +MK
Sbjct: 474 TCLLLLEEVKKKNMHESAERIEHIMK 499
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18396782|ref|NP_566222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|79312733|ref|NP_001030630.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|218546763|sp|Q9M8W9.2|PP211_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g04130, mitochondrial; Flags: Precursor gi|332640519|gb|AEE74040.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|332640520|gb|AEE74041.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 581 bits (1497), Expect = e-163, Method: Compositional matrix adjust.
Identities = 268/446 (60%), Positives = 345/446 (77%), Gaps = 1/446 (0%)
Query: 68 DVIISKVHVGSSEDEVFQSLKQDHVCNAIQPSHYLVNKLIHRFKDDWKSALGIFRWAGSC 127
+VI+ + SED+VF+ L D +C + S LV+KL+HRF+DDW+SALGI +WA SC
Sbjct: 55 NVIVGRDGDRDSEDDVFKRLSSDEICKRVNLSDGLVHKLLHRFRDDWRSALGILKWAESC 114
Query: 128 PGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDA 187
G++HSS+ Y+M VDILGK ++ D+M+ +E M +VTLNT+AK+MRRF+GAG+WE+A
Sbjct: 115 KGHKHSSDAYDMAVDILGKAKKWDRMKEFVERMRGDKLVTLNTVAKIMRRFAGAGEWEEA 174
Query: 188 VRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGW 247
V FD LG FGLEKNTE+MNLLLDTLCKE +VE AR V L+LKS I PNAHTFNIFIHGW
Sbjct: 175 VGIFDRLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLQLKSHITPNAHTFNIFIHGW 234
Query: 248 CKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNV 307
CK NRV+EA WTIQEMKGHG PCVISY+TII+ YC+Q+ F KVYE+L EM+A G PPN
Sbjct: 235 CKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNS 294
Query: 308 VTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQV 367
+TYTT+MS L +FEEA+R+ +MK G KPDS F+NCLI+TL RA R++EA V++V
Sbjct: 295 ITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRV 354
Query: 368 EMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKT 427
EMPE GV+ +TST+N+MI M+ HH +KA +L+EM C P+V T+ PLL+SCFK
Sbjct: 355 EMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKR 414
Query: 428 GKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQ 487
G E + +LL +MV KHHLSLD +TYT +I LCRAN CEWAY LF+EMI DITPR++
Sbjct: 415 GDVVE-VGKLLKEMVTKHHLSLDESTYTFLIQRLCRANMCEWAYCLFEEMISQDITPRHR 473
Query: 488 TCRLILDEVKQKHMYDAAEKIEAVMK 513
TC L+L+EVK+K+M+++AE+IE +MK
Sbjct: 474 TCLLLLEEVKKKNMHESAERIEHIMK 499
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|6721172|gb|AAF26800.1|AC016829_24 hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 579 bits (1492), Expect = e-162, Method: Compositional matrix adjust.
Identities = 268/446 (60%), Positives = 345/446 (77%), Gaps = 1/446 (0%)
Query: 68 DVIISKVHVGSSEDEVFQSLKQDHVCNAIQPSHYLVNKLIHRFKDDWKSALGIFRWAGSC 127
+VI+ + SED+VF+ L D +C + S LV+KL+HRF+DDW+SALGI +WA SC
Sbjct: 119 NVIVGRDGDRDSEDDVFKRLSSDEICKRVNLSDGLVHKLLHRFRDDWRSALGILKWAESC 178
Query: 128 PGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDA 187
G++HSS+ Y+M VDILGK ++ D+M+ +E M +VTLNT+AK+MRRF+GAG+WE+A
Sbjct: 179 KGHKHSSDAYDMAVDILGKAKKWDRMKEFVERMRGDKLVTLNTVAKIMRRFAGAGEWEEA 238
Query: 188 VRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGW 247
V FD LG FGLEKNTE+MNLLLDTLCKE +VE AR V L+LKS I PNAHTFNIFIHGW
Sbjct: 239 VGIFDRLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLQLKSHITPNAHTFNIFIHGW 298
Query: 248 CKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNV 307
CK NRV+EA WTIQEMKGHG PCVISY+TII+ YC+Q+ F KVYE+L EM+A G PPN
Sbjct: 299 CKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNS 358
Query: 308 VTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQV 367
+TYTT+MS L +FEEA+R+ +MK G KPDS F+NCLI+TL RA R++EA V++V
Sbjct: 359 ITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRV 418
Query: 368 EMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKT 427
EMPE GV+ +TST+N+MI M+ HH +KA +L+EM C P+V T+ PLL+SCFK
Sbjct: 419 EMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKR 478
Query: 428 GKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQ 487
G E + +LL +MV KHHLSLD +TYT +I LCRAN CEWAY LF+EMI DITPR++
Sbjct: 479 GDVVE-VGKLLKEMVTKHHLSLDESTYTFLIQRLCRANMCEWAYCLFEEMISQDITPRHR 537
Query: 488 TCRLILDEVKQKHMYDAAEKIEAVMK 513
TC L+L+EVK+K+M+++AE+IE +MK
Sbjct: 538 TCLLLLEEVKKKNMHESAERIEHIMK 563
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 515 | ||||||
| TAIR|locus:2103075 | 508 | AT3G04130 "AT3G04130" [Arabido | 0.864 | 0.875 | 0.600 | 5.4e-150 | |
| TAIR|locus:2094394 | 562 | AT3G22670 [Arabidopsis thalian | 0.867 | 0.795 | 0.391 | 5.6e-84 | |
| TAIR|locus:2096074 | 599 | AT3G62540 "AT3G62540" [Arabido | 0.912 | 0.784 | 0.283 | 1.2e-47 | |
| TAIR|locus:2185455 | 598 | AT5G14820 "AT5G14820" [Arabido | 0.867 | 0.747 | 0.286 | 3.3e-47 | |
| TAIR|locus:2096099 | 599 | AT3G62470 "AT3G62470" [Arabido | 0.912 | 0.784 | 0.281 | 2.3e-46 | |
| TAIR|locus:2147947 | 602 | AT5G11310 "AT5G11310" [Arabido | 0.805 | 0.689 | 0.279 | 3.1e-44 | |
| TAIR|locus:2097395 | 638 | AT3G49730 [Arabidopsis thalian | 0.782 | 0.631 | 0.271 | 3.9e-44 | |
| TAIR|locus:2156213 | 637 | AT5G65820 [Arabidopsis thalian | 0.794 | 0.642 | 0.258 | 1.3e-43 | |
| TAIR|locus:2012883 | 537 | AT1G20300 [Arabidopsis thalian | 0.765 | 0.733 | 0.268 | 7.3e-43 | |
| TAIR|locus:2173403 | 730 | AT5G64320 "AT5G64320" [Arabido | 0.858 | 0.605 | 0.265 | 6.8e-40 |
| TAIR|locus:2103075 AT3G04130 "AT3G04130" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1464 (520.4 bits), Expect = 5.4e-150, P = 5.4e-150
Identities = 268/446 (60%), Positives = 345/446 (77%)
Query: 68 DVIISKVHVGSSEDEVFQSLKQDHVCNAIQPSHYLVNKLIHRFKDDWKSALGIFRWAGSC 127
+VI+ + SED+VF+ L D +C + S LV+KL+HRF+DDW+SALGI +WA SC
Sbjct: 55 NVIVGRDGDRDSEDDVFKRLSSDEICKRVNLSDGLVHKLLHRFRDDWRSALGILKWAESC 114
Query: 128 PGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDA 187
G++HSS+ Y+M VDILGK ++ D+M+ +E M +VTLNT+AK+MRRF+GAG+WE+A
Sbjct: 115 KGHKHSSDAYDMAVDILGKAKKWDRMKEFVERMRGDKLVTLNTVAKIMRRFAGAGEWEEA 174
Query: 188 VRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGW 247
V FD LG FGLEKNTE+MNLLLDTLCKE +VE AR V L+LKS I PNAHTFNIFIHGW
Sbjct: 175 VGIFDRLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLQLKSHITPNAHTFNIFIHGW 234
Query: 248 CKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNV 307
CK NRV+EA WTIQEMKGHG PCVISY+TII+ YC+Q+ F KVYE+L EM+A G PPN
Sbjct: 235 CKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNS 294
Query: 308 VTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQV 367
+TYTT+MS L +FEEA+R+ +MK G KPDS F+NCLI+TL RA R++EA V++V
Sbjct: 295 ITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRV 354
Query: 368 EMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKT 427
EMPE GV+ +TST+N+MI M+ HH +KA +L+EM C P+V T+ PLL+SCFK
Sbjct: 355 EMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKR 414
Query: 428 GKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQ 487
G E + +LL +MV KHHLSLD +TYT +I LCRAN CEWAY LF+EMI DITPR++
Sbjct: 415 GDVVE-VGKLLKEMVTKHHLSLDESTYTFLIQRLCRANMCEWAYCLFEEMISQDITPRHR 473
Query: 488 TCRLILDEVKQKHMYDAAEKIEAVMK 513
TC L+L+EVK+K+M+++AE+IE +MK
Sbjct: 474 TCLLLLEEVKKKNMHESAERIEHIMK 499
|
|
| TAIR|locus:2094394 AT3G22670 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 841 (301.1 bits), Expect = 5.6e-84, P = 5.6e-84
Identities = 181/462 (39%), Positives = 283/462 (61%)
Query: 59 VDSPRLPDIDVIISKVHV-GSSEDEVFQSLKQDHVCNAIQPSHYLVNKLIHRFKDDWKSA 117
V P + DID + ++ +S ++V + L + C+ + + LV +++ RF + W A
Sbjct: 95 VKKP-VEDIDKVCDFLNKKDTSHEDVVKELSK---CDVVV-TESLVLQVLRRFSNGWNQA 149
Query: 118 LGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGH---IVTLNTIAKV 174
G F WA S GY HS Y MVD+LGK R D M L+ EM+K +VTL+T++KV
Sbjct: 150 YGFFIWANSQTGYVHSGHTYNAMVDVLGKCRNFDLMWELVNEMNKNEESKLVTLDTMSKV 209
Query: 175 MRRFSGAGQWEDAVRTFDELG-TFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCI 233
MRR + +G++ AV F E+ ++G++ +T MN L+D L KE +E A VFL+L I
Sbjct: 210 MRRLAKSGKYNKAVDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVFLKLFDTI 269
Query: 234 PPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYE 293
P+A TFNI IHG+CK + D+A+ + MK P V++Y++ +++YC++ +F +V E
Sbjct: 270 KPDARTFNILIHGFCKARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNE 329
Query: 294 LLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLG 353
+L+EM+ GC PNVVTYT VM L KS EA+ + EKMK G PD++F++ LI+ L
Sbjct: 330 MLEEMRENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILS 389
Query: 354 RASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMN--KLEHCK 411
+ R ++A +++ +M GV D +NTMI+ HH E A +L+ M + E C
Sbjct: 390 KTGRFKDAAEIFE-DMTNQGVRRDVLVYNTMISAALHHSRDEMALRLLKRMEDEEGESCS 448
Query: 412 PNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAY 471
PNV+T+ PLLK C K + L LL MV K+ +S+D++TY L+I GLC + K E A
Sbjct: 449 PNVETYAPLLKMCCHKKKM-KLLGILLHHMV-KNDVSIDVSTYILLIRGLCMSGKVEEAC 506
Query: 472 LLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVMK 513
L F+E + + PR TC++++DE+++K+M +A KI+++++
Sbjct: 507 LFFEEAVRKGMVPRDSTCKMLVDELEKKNMAEAKLKIQSLVQ 548
|
|
| TAIR|locus:2096074 AT3G62540 "AT3G62540" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
Identities = 139/491 (28%), Positives = 241/491 (49%)
Query: 4 HLQKYLKQARIPLNPLTSRIRFHSSSENCSHIVS-SSPIESYCSDG--ARLDHHQ---VL 57
H Y +IPL P +S ++ +S C S SS + C + + D+ + V
Sbjct: 63 HSSTYHPYRQIPL-PHSS-VQLLDASLGCRGFSSGSSNVSDGCDEEVESECDNDEETGVS 120
Query: 58 CVDSPRLPDIDVIISKVHVGSSEDEVFQ-SLKQDHVCNAIQP--SHYLVNKLIHRFKDDW 114
CV+S P+ + KV DE+F + V + ++ SH L+ +++ RF+
Sbjct: 121 CVESSTNPEEVERVCKVI-----DELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHAR 175
Query: 115 KSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKV 174
K A F WA G+ H+S Y M+ IL K RQ + M ++LEEM ++T+ T
Sbjct: 176 KPAFRFFCWAAERQGFAHASRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIA 235
Query: 175 MRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIP 234
M+ F+ A + + AV F+ + + + ET+N LLD+L + + A+ +F +LK
Sbjct: 236 MKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFT 295
Query: 235 PNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYEL 294
PN T+ + ++GWC++ + EA +M HG P +++++ +++ R S +L
Sbjct: 296 PNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKL 355
Query: 295 LDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGR 354
M+++G PNV +YT ++ K E AI + M G +PD+ + CLI G
Sbjct: 356 FHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGT 415
Query: 355 ASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNV 414
++ + VY EM E G PD T+N +I + ++ E + +M + E +P++
Sbjct: 416 QKKL-DTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNE-IEPSI 473
Query: 415 QTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLF 474
TF+ ++KS F + E + D+M+ K + D +YT++I GL K A
Sbjct: 474 HTFNMIMKSYF-VARNYEMGRAVWDEMIKKG-ICPDDNSYTVLIRGLISEGKSREACRYL 531
Query: 475 KEMIGHDI-TP 484
+EM+ + TP
Sbjct: 532 EEMLDKGMKTP 542
|
|
| TAIR|locus:2185455 AT5G14820 "AT5G14820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
Identities = 133/464 (28%), Positives = 227/464 (48%)
Query: 25 FHSSSENCSHIVSSSPIESYCSDGARLDHHQVLCVDSPRLPDIDVIISKVHVGSSEDEVF 84
F S S N S +ES C + + V CV+S P+ + KV DE+F
Sbjct: 91 FSSGSSNVSDGCDEE-VESECDND---EETGVSCVESSTNPEEVERVCKVI-----DELF 141
Query: 85 Q-SLKQDHVCNAIQP--SHYLVNKLIHRFKDDWKSALGIFRWAGSCPGYEHSSEIYEMMV 141
+ V + ++ SH L+ +++ RF+ K A F WA G+ H S Y M+
Sbjct: 142 ALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMM 201
Query: 142 DILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEK 201
IL K RQ + M ++LEEM ++T+ T M+ F+ A + + AV F+ + + +
Sbjct: 202 SILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKI 261
Query: 202 NTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQ 261
ET+N LLD+L + + A+ +F +LK PN T+ + ++GWC++ + EA
Sbjct: 262 GVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWN 321
Query: 262 EMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSG 321
+M HG P +++++ +++ R S +L M+++G PNV +YT ++ K
Sbjct: 322 DMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQS 381
Query: 322 DFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTF 381
E AI + M G +PD+ + CLI G ++ + VY EM E G PD T+
Sbjct: 382 SMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKL-DTVYELLKEMQEKGHPPDGKTY 440
Query: 382 NTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDM 441
N +I + ++ E + +M + E +P++ TF+ ++KS F + E + D+M
Sbjct: 441 NALIKLMANQKMPEHGTRIYNKMIQNE-IEPSIHTFNMIMKSYF-VARNYEMGRAVWDEM 498
Query: 442 VNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDI-TP 484
+ K + D +YT++I GL K A +EM+ + TP
Sbjct: 499 IKKG-ICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTP 541
|
|
| TAIR|locus:2096099 AT3G62470 "AT3G62470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
Identities = 138/491 (28%), Positives = 240/491 (48%)
Query: 4 HLQKYLKQARIPLNPLTSRIRFHSSSENCSHIVS-SSPIESYCSDG--ARLDHHQ---VL 57
H Y +IPL P +S ++ +S C S SS + C + + D+ + V
Sbjct: 63 HSSTYHPYRQIPL-PHSS-VQLLDASLGCRGFSSGSSNVSDGCDEEVESECDNDEETGVS 120
Query: 58 CVDSPRLPDIDVIISKVHVGSSEDEVFQ-SLKQDHVCNAIQP--SHYLVNKLIHRFKDDW 114
CV+S P+ + KV DE+F + V + ++ SH L+ +++ RF+
Sbjct: 121 CVESSTNPEEVERVCKVI-----DELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHAR 175
Query: 115 KSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKV 174
K A F WA G+ H S Y M+ IL K RQ + M ++LEEM ++T+ T
Sbjct: 176 KPAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIA 235
Query: 175 MRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIP 234
M+ F+ A + + AV F+ + + + ET+N LLD+L + + A+ +F +LK
Sbjct: 236 MKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFT 295
Query: 235 PNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYEL 294
PN T+ + ++GWC++ + EA +M G P +++++ +++ R S +L
Sbjct: 296 PNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKL 355
Query: 295 LDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGR 354
M+++G PNV +YT ++ K E AI + M G +PD+ + CLI G
Sbjct: 356 FHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGT 415
Query: 355 ASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNV 414
++ + VY EM E G PD T+N +I + ++ E A + +M + E +P++
Sbjct: 416 QKKL-DTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNE-IEPSI 473
Query: 415 QTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLF 474
TF+ ++KS F + E + ++M+ K + D +YT++I GL K A
Sbjct: 474 HTFNMIMKSYFMA-RNYEMGRAVWEEMIKKG-ICPDDNSYTVLIRGLIGEGKSREACRYL 531
Query: 475 KEMIGHDI-TP 484
+EM+ + TP
Sbjct: 532 EEMLDKGMKTP 542
|
|
| TAIR|locus:2147947 AT5G11310 "AT5G11310" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
Identities = 121/433 (27%), Positives = 222/433 (51%)
Query: 96 IQPSHYLVNKLIHRFKDDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRA 155
I+PS LV+ L R +F+WA PG+ S +++ +V+ L K R+ + +
Sbjct: 97 IEPSVELVHALFDRLSSSPMLLHSVFKWAEMKPGFTLSPSLFDSVVNSLCKAREFEIAWS 156
Query: 156 LLEEMSKG----HIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFG--LEKNTET--MN 207
L+ + + ++V+ +T ++RR++ AG + A+R F+ ++ + TE +
Sbjct: 157 LVFDRVRSDEGSNLVSADTFIVLIRRYARAGMVQQAIRAFEFARSYEPVCKSATELRLLE 216
Query: 208 LLLDTLCKEGKVELARSVFLE-----LKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQE 262
+LLD LCKEG V A S++LE + S P+ FNI ++GW + ++ +A+ +E
Sbjct: 217 VLLDALCKEGHVREA-SMYLERIGGTMDSNWVPSVRIFNILLNGWFRSRKLKQAEKLWEE 275
Query: 263 MKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGD 322
MK P V++Y T+I+ YCR E+L+EM+ N + + ++ L ++G
Sbjct: 276 MKAMNVKPTVVTYGTLIEGYCRMRRVQIAMEVLEEMKMAEMEINFMVFNPIIDGLGEAGR 335
Query: 323 FEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFN 382
EA+ + E+ + S P +N L+ +A + A + ++ M GV P T+T+N
Sbjct: 336 LSEALGMMERFFVCESGPTIVTYNSLVKNFCKAGDLPGASKILKMMMTR-GVDPTTTTYN 394
Query: 383 TMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMV 442
FS H E+ ++ ++ + H P+ T+H +LK + GK + Q+ +M
Sbjct: 395 HFFKYFSKHNKTEEGMNLYFKLIEAGH-SPDRLTYHLILKMLCEDGKLSLAM-QVNKEMK 452
Query: 443 NKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKHMY 502
N+ + D+ T T++IH LCR E A+ F + I P+Y T ++I + ++ K M
Sbjct: 453 NRG-IDPDLLTTTMLIHLLCRLEMLEEAFEEFDNAVRRGIIPQYITFKMIDNGLRSKGMS 511
Query: 503 DAAEKIEAVMKKL 515
D A+++ ++M L
Sbjct: 512 DMAKRLSSLMSSL 524
|
|
| TAIR|locus:2097395 AT3G49730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
Identities = 112/412 (27%), Positives = 206/412 (50%)
Query: 102 LVNKLIHRFKDDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMS 161
L+ +++ R D F WA PGY HS E+ + MV IL K+RQ + L+EEM
Sbjct: 99 LIIRVLSRCGDAGNLGYRFFLWATKQPGYFHSYEVCKSMVMILSKMRQFGAVWGLIEEMR 158
Query: 162 KGH--IVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKV 219
K + ++ +MRRF+ A + AV DE+ +GLE + LLD LCK G V
Sbjct: 159 KTNPELIEPELFVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSV 218
Query: 220 ELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTII 279
+ A VF +++ PPN F ++GWC+ ++ EA+ + +MK G P ++ ++ ++
Sbjct: 219 KEASKVFEDMREKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLL 278
Query: 280 QSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGD-FEEAIRITEKMKIVGS 338
Y + Y+L+++M+ +G PNV YT ++ L ++ +EA+R+ +M+ G
Sbjct: 279 SGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGC 338
Query: 339 KPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAF 398
+ D + LI + + + V +M + GV P T+ ++ E+
Sbjct: 339 EADIVTYTALISGFCKWGMIDKGYSVLD-DMRKKGVMPSQVTYMQIMVAHEKKEQFEECL 397
Query: 399 HVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVI 458
++E+M K C P++ ++ +++ K G+ E + +L ++M + LS + T+ ++I
Sbjct: 398 ELIEKM-KRRGCHPDLLIYNVVIRLACKLGEVKEAV-RLWNEM-EANGLSPGVDTFVIMI 454
Query: 459 HGLCRANKCEWAYLLFKEMIGHDI--TPRYQTCRLILDEVKQKHMYDAAEKI 508
+G A FKEM+ I P+Y T + +L+ + + + A+ +
Sbjct: 455 NGFTSQGFLIEACNHFKEMVSRGIFSAPQYGTLKSLLNNLVRDDKLEMAKDV 506
|
|
| TAIR|locus:2156213 AT5G65820 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
Identities = 108/418 (25%), Positives = 210/418 (50%)
Query: 102 LVNKLIHRFKDDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMS 161
L+ ++++R D F WA P Y HS E+Y+ MV IL K+RQ + L+EEM
Sbjct: 115 LIERVLNRCGDAGNLGYRFFVWAAKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMR 174
Query: 162 KGH--IVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKV 219
K + ++ +++RF+ A + A+ DE+ FG E + LLD LCK G V
Sbjct: 175 KENPQLIEPELFVVLVQRFASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSV 234
Query: 220 ELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTII 279
+ A +F +++ P N F ++GWC++ ++ EA++ + +M G P ++ Y+ ++
Sbjct: 235 KDAAKLFEDMRMRFPVNLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLL 294
Query: 280 QSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSK 339
Y + Y+LL +M+ +G PN YT ++ L K EEA+++ +M+ +
Sbjct: 295 SGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECE 354
Query: 340 PDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFH 399
D + L+ + ++ + Y+ +M + G+ P T+ ++ E+
Sbjct: 355 ADVVTYTALVSGFCKWGKIDKC-YIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEECLE 413
Query: 400 VLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIH 459
++E+M ++E+ P++ ++ +++ K G+ E + +L ++M ++ LS + T+ ++I+
Sbjct: 414 LMEKMRQIEY-HPDIGIYNVVIRLACKLGEVKEAV-RLWNEM-EENGLSPGVDTFVIMIN 470
Query: 460 GLCRANKCEWAYLLFKEMIGHDI--TPRYQTCRLILDEV-KQKHMYDAAEKIEAVMKK 514
GL A FKEM+ + +Y T +L+L+ V K K + A + + K
Sbjct: 471 GLASQGCLLEASDHFKEMVTRGLFSVSQYGTLKLLLNTVLKDKKLEMAKDVWSCITSK 528
|
|
| TAIR|locus:2012883 AT1G20300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
Identities = 108/402 (26%), Positives = 202/402 (50%)
Query: 117 ALGIFRWAGSCPGYEHSS-EIYEMMVDILGKVRQMDQMRALLEEMSKGHI-VTLNTIAKV 174
+L F WA S Y+H S Y M+D+ GKVRQ D L++ M ++ +++ T +
Sbjct: 133 SLAFFNWATSRDDYDHKSPHPYNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTIL 192
Query: 175 MRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIP 234
+RR+ AG +AV F+ + +G + ++++ L ++ + A+S F LK
Sbjct: 193 IRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDRFE 252
Query: 235 PNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYEL 294
P+ + + GWC+ + EA+ +EMK G P V +YS +I + CR S+ +++
Sbjct: 253 PDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDV 312
Query: 295 LDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGR 354
+M GC PN +T+ +M K+G E+ +++ +MK +G +PD+ +N LI R
Sbjct: 313 FADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCR 372
Query: 355 ASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNV 414
++ AV V M + + STFNT+ A + +M + + C+PN
Sbjct: 373 DENLENAVKVLNT-MIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAK-CEPNT 430
Query: 415 QTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLF 474
T++ L++ F K+ + + ++ +M +K + ++ TY L++ C AY LF
Sbjct: 431 VTYNILMRM-FVGSKSTDMVLKMKKEMDDKE-VEPNVNTYRLLVTMFCGMGHWNNAYKLF 488
Query: 475 KEMIGHD-ITPRYQTCRLILDEVKQKHMYDAAEK-IEAVMKK 514
KEM+ +TP ++L ++++ E+ +E +++K
Sbjct: 489 KEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEKMIQK 530
|
|
| TAIR|locus:2173403 AT5G64320 "AT5G64320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 431 (156.8 bits), Expect = 6.8e-40, P = 6.8e-40
Identities = 121/455 (26%), Positives = 224/455 (49%)
Query: 62 PRLPDIDVIISKVHVGSSEDEVFQSLKQDHVCNAIQPSHYLVNKLIHRF--KDDWKSALG 119
P +V++ ++ V + +V ++ D + I P+ + ++ F ++ SAL
Sbjct: 180 PTFKSYNVVL-EILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALS 238
Query: 120 IFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMS-KGHIVTLNTIAKVMRRF 178
+ R G +S IY+ ++ L K ++++ LLEEM G + T V+
Sbjct: 239 LLRDMTK-HGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGL 297
Query: 179 SGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAH 238
+ +A + + + G + T L++ LCK G+V+ A+ +F + P
Sbjct: 298 CKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK---PEIV 354
Query: 239 TFNIFIHGWCKINRVDEAQWTIQEM-KGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDE 297
FN IHG+ R+D+A+ + +M +G P V +Y+++I Y ++ E+L +
Sbjct: 355 IFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHD 414
Query: 298 MQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASR 357
M+ +GC PNV +YT ++ K G +EA + +M G KP++ FNCLI + R
Sbjct: 415 MRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHR 474
Query: 358 VQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTF 417
+ EAV +++ EMP G PD TFN++I+ + A +L +M E N T+
Sbjct: 475 IPEAVEIFR-EMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMIS-EGVVANTVTY 532
Query: 418 HPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEM 477
+ L+ + + G+ E +L+++MV + LD TY +I GLCRA + + A LF++M
Sbjct: 533 NTLINAFLRRGEIKEA-RKLVNEMVFQGS-PLDEITYNSLIKGLCRAGEVDKARSLFEKM 590
Query: 478 IGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVM 512
+ P +C ++++ + + M + A + + M
Sbjct: 591 LRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEM 625
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9M8W9 | PP211_ARATH | No assigned EC number | 0.6008 | 0.8640 | 0.8759 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 515 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-15 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-14 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-09 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-04 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 79.2 bits (195), Expect = 2e-15
Identities = 54/233 (23%), Positives = 97/233 (41%), Gaps = 4/233 (1%)
Query: 283 CRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDS 342
+ +L +Q G + YTT++S AKSG + + +M G + +
Sbjct: 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANV 507
Query: 343 RFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLE 402
F LI RA +V +A Y + M V PD FN +I+ G ++AF VL
Sbjct: 508 HTFGALIDGCARAGQVAKAFGAYGI-MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLA 566
Query: 403 EMNKLEH-CKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGL 461
EM H P+ T L+K+C G+ D + M++++++ YT+ ++
Sbjct: 567 EMKAETHPIDPDHITVGALMKACANAGQVDRAKE--VYQMIHEYNIKGTPEVYTIAVNSC 624
Query: 462 CRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVMKK 514
+ ++A ++ +M + P ++D D A +I +K
Sbjct: 625 SQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK 677
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 78.0 bits (192), Expect = 5e-15
Identities = 71/335 (21%), Positives = 138/335 (41%), Gaps = 42/335 (12%)
Query: 209 LLDTLCKEGKVELARSVFLELKSC-IPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHG 267
L+ T K GKV+ VF E+ + + N HTF I G + +V +A M+
Sbjct: 478 LISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN 537
Query: 268 CHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCP--PNVVTYTTVMSYLAK------ 319
P + ++ +I + + + +++L EM+A+ P P+ +T +M A
Sbjct: 538 VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDR 597
Query: 320 -----------------------------SGDFEEAIRITEKMKIVGSKPDSRFFNCLIY 350
GD++ A+ I + MK G KPD FF+ L+
Sbjct: 598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD 657
Query: 351 TLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHC 410
G A + +A + Q + + G+ T ++++++ S+ + +KA + E++ K
Sbjct: 658 VAGHAGDLDKAFEILQ-DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI-KSIKL 715
Query: 411 KPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWA 470
+P V T + L+ + + + + L +L +M L + TY++++ R + +
Sbjct: 716 RPTVSTMNALITALCEGNQLPKALE-VLSEMKRL-GLCPNTITYSILLVASERKDDADVG 773
Query: 471 YLLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAA 505
L + I P CR I ++ A
Sbjct: 774 LDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACA 808
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.1 bits (160), Expect = 9e-14
Identities = 18/50 (36%), Positives = 32/50 (64%)
Query: 270 PCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAK 319
P V++Y+T+I YC++ + +L +EM+ +G PNV TY+ ++ L K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 2e-12
Identities = 75/380 (19%), Positives = 147/380 (38%), Gaps = 45/380 (11%)
Query: 140 MVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGL 199
++D+ K ++ R + + M + V N++ + ++ G E+A+ + E+ G+
Sbjct: 265 LIDMYSKCGDIEDARCVFDGMPEKTTVAWNSM---LAGYALHGYSEEALCLYYEMRDSGV 321
Query: 200 EKNTETMNLLLDTLCKEGKVELARSVFLEL-KSCIPPNAHTFNIFIHGWCKINRVDEAQW 258
+ T ++++ + +E A+ L ++ P + + + K R+++A+
Sbjct: 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARN 381
Query: 259 TIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLA 318
M +IS++ +I Y +K E+ + M A+G PN VT+ V+S
Sbjct: 382 VFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACR 437
Query: 319 KSGDFEEAIRITEKM-KIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPD 377
SG E+ I + M + KP + + C+I LGR + EA + + AP
Sbjct: 438 YSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIR-------RAPF 490
Query: 378 TSTFN---TMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECL 434
T N ++T H + E E++ + K N + LL +G+ E
Sbjct: 491 KPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLN--NYVVLLNLYNSSGRQAEAA 548
Query: 435 SQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYL-------LFKEMIGHDITPRYQ 487
+ TL GL C W + + + YQ
Sbjct: 549 KVV----------------ETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQ 592
Query: 488 TCRLILDEVKQKHMYDAAEK 507
++ E+ + + Y A E
Sbjct: 593 KLDELMKEISE-YGYVAEEN 611
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 3e-12
Identities = 52/242 (21%), Positives = 106/242 (43%), Gaps = 13/242 (5%)
Query: 179 SGAGQWEDAVRTFDELGTFGLEK-----NTETMNLLLDTLCKEGKVELARSVFLEL-KSC 232
SGA R FD L E + T+ L+ G+V+ A+ V+ + +
Sbjct: 555 SGAVD-----RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN 609
Query: 233 IPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVY 292
I + I ++ + D A +MK G P + +S ++ + K +
Sbjct: 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF 669
Query: 293 ELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTL 352
E+L + + QG V+Y+++M + + ++++A+ + E +K + +P N LI L
Sbjct: 670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITAL 729
Query: 353 GRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKP 412
+++ +A+ V EM G+ P+T T++ ++ + +L + K + KP
Sbjct: 730 CEGNQLPKALEVLS-EMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQA-KEDGIKP 787
Query: 413 NV 414
N+
Sbjct: 788 NL 789
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.8 bits (141), Expect = 4e-11
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 201 KNTETMNLLLDTLCKEGKVELARSVFLELKSC-IPPNAHTFNIFIHGWCK 249
+ T N L+D CK+GKVE A +F E+K I PN +T++I I G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.0 bits (139), Expect = 8e-11
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 235 PNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCR 284
P+ T+N I G+CK +V+EA EMK G P V +YS +I C+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 8e-10
Identities = 37/191 (19%), Positives = 91/191 (47%), Gaps = 5/191 (2%)
Query: 152 QMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLD 211
+M+A + HI T+ +M+ + AGQ + A + + + ++ E + ++
Sbjct: 567 EMKAETHPIDPDHI----TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN 622
Query: 212 TLCKEGKVELARSVFLEL-KSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHP 270
+ ++G + A S++ ++ K + P+ F+ + +D+A +Q+ + G
Sbjct: 623 SCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682
Query: 271 CVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRIT 330
+SYS+++ + N+ K EL +++++ P V T +++ L + +A+ +
Sbjct: 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVL 742
Query: 331 EKMKIVGSKPD 341
+MK +G P+
Sbjct: 743 SEMKRLGLCPN 753
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 2e-09
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 305 PNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGR 354
P+VVTY T++ K G EEA+++ +MK G KP+ ++ LI L +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 3e-09
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 376 PDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFK 426
PD T+NT+I + G E+A + EM K KPNV T+ L+ K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRG-IKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 4e-09
Identities = 52/214 (24%), Positives = 83/214 (38%), Gaps = 14/214 (6%)
Query: 272 VISYSTIIQSYCRQY-NFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRIT 330
VIS+++II F + +M PN VT +S A+ G I
Sbjct: 455 VISWTSIIAGLRLNNRCFEALI-FFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIH 512
Query: 331 EKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSH 390
+ G D N L+ R R+ A + N D ++N ++T +
Sbjct: 513 AHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF------NSHEKDVVSWNILLTGYVA 566
Query: 391 HGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLD 450
HG A + M + P+ TF LL +C ++G + L + M K+ ++ +
Sbjct: 567 HGKGSMAVELFNRMVESGVN-PDEVTFISLLCACSRSGMVTQGL-EYFHSMEEKYSITPN 624
Query: 451 ITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITP 484
+ Y V+ L RA K AY +M ITP
Sbjct: 625 LKHYACVVDLLGRAGKLTEAYNFINKM---PITP 655
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 2e-06
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 233 IPPNAHTFNIFIHGWCKINRVDEAQWTIQEMK 264
+ P+ T+N I G C+ RVDEA + EM+
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 2e-06
Identities = 12/34 (35%), Positives = 24/34 (70%)
Query: 301 QGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMK 334
+G P+VVTY T++ L ++G +EA+ + ++M+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 5e-06
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 273 ISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNV 307
++Y+T+I C+ + EL EM+ +G P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 6e-06
Identities = 33/136 (24%), Positives = 64/136 (47%), Gaps = 9/136 (6%)
Query: 272 VISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITE 331
V+S++ ++ Y S EL + M G P+ VT+ +++ ++SG + +
Sbjct: 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFH 613
Query: 332 KMKI-VGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSH 390
M+ P+ + + C++ LGRA ++ EA Y + +MP + PD + + ++
Sbjct: 614 SMEEKYSITPNLKHYACVVDLLGRAGKLTEA-YNFINKMP---ITPDPAVWGALLNACRI 669
Query: 391 HGHHE----KAFHVLE 402
H H E A H+ E
Sbjct: 670 HRHVELGELAAQHIFE 685
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 4e-05
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 450 DITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITP 484
D+ TY +I G C+ K E A LF EM I P
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKP 36
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (95), Expect = 5e-05
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 267 GCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQ 299
G P V++Y+T+I CR + ELLDEM+
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.6 bits (94), Expect = 8e-05
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 372 NGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEM 404
G+ PD T+NT+I G ++A +L+EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 1e-04
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 447 LSLDITTYTLVIHGLCRANKCEWAYLLFKEM 477
L D+ TY +I GLCRA + + A L EM
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 1e-04
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 308 VTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDS 342
VTY T++ L K+G EEA+ + ++MK G +PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 165 IVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCK 215
+VT NT+ + + G+ E+A++ F+E+ G++ N T ++L+D LCK
Sbjct: 3 VVTYNTL---IDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 3e-04
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 380 TFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNV 414
T+NT+I G E+A + +EM K +P+V
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEM-KERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 5e-04
Identities = 44/223 (19%), Positives = 82/223 (36%), Gaps = 55/223 (24%)
Query: 294 LLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSR---------- 343
L DEM + N+ ++ T++ L +G++ EA + +M GS + R
Sbjct: 180 LFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASA 235
Query: 344 ------------------------FFNC-LIYTLGRASRVQEAVYVYQVEMPENGVAPDT 378
F +C LI + +++A V+ MPE
Sbjct: 236 GLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFD-GMPEKTTV--- 291
Query: 379 STFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQ----TFHPLLKSCFKTGKTDECL 434
+N+M+ ++ HG+ E+A + EM V TF +++ + E
Sbjct: 292 -AWNSMLAGYALHGYSEEALCLYYEM-----RDSGVSIDQFTFSIMIRIFSRLALL-EHA 344
Query: 435 SQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEM 477
Q ++ + LDI T ++ + + E A +F M
Sbjct: 345 KQAHAGLI-RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM 386
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 7e-04
Identities = 37/159 (23%), Positives = 64/159 (40%), Gaps = 11/159 (6%)
Query: 272 VISYSTIIQSYCRQYNF--SKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRI 329
+S++ +I Y + N K E M+ P+ +T +V+S A GD + +++
Sbjct: 354 AVSWTAMISGY--EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL 411
Query: 330 TEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFS 389
E + G N LI + + +A+ V+ +PE V TS +I
Sbjct: 412 HELAERKGLISYVVVANALIEMYSKCKCIDKALEVFH-NIPEKDVISWTS----IIAGLR 466
Query: 390 HHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTG 428
+ +A +M L KPN T L +C + G
Sbjct: 467 LNNRCFEALIFFRQM--LLTLKPNSVTLIAALSACARIG 503
|
Length = 857 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 7e-04
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 273 ISYSTIIQSYCRQYNFSKVYELLDEMQAQGC 303
++Y+++I YC+ + EL EM+ +G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 7e-04
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 453 TYTLVIHGLCRANKCEWAYLLFKEMIGHDI 482
TY +I G C+A K E A LFKEM +
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 453 TYTLVIHGLCRANKCEWAYLLFKEMIGHDITP 484
TY +I GLC+A + E A LFKEM I P
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 239 TFNIFIHGWCKINRVDEAQWTIQEMKGHGC 268
T+N I G+CK +++EA +EMK G
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 379 STFNTMITMFSHHGHHEKAFHVLEEM 404
T+N++I+ + G E+A + +EM
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEM 26
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.002
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 308 VTYTTVMSYLAKSGDFEEAIRITEKMK 334
VTY +++S K+G EEA+ + ++MK
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMK 27
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 345 FNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDT 378
+N LI L +A RV+EA+ +++ EM E G+ PD
Sbjct: 3 YNTLIDGLCKAGRVEEALELFK-EMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.003
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 380 TFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKP 412
T+N ++ + G + A VLEEM K KP
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEM-KASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 34.8 bits (81), Expect = 0.003
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 307 VVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKP 340
+ TY ++ LAK+GD + A+ + E+MK G KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 515 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.89 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.89 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.87 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.85 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.83 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.83 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.81 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.79 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.79 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.75 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.73 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.72 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.71 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.68 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.66 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.66 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.66 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.65 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.64 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.64 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.64 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.62 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.61 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.61 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.61 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.59 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.59 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.58 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.55 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.53 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.53 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.53 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.46 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.46 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.46 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.44 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.43 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.42 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.4 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.39 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.38 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.35 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.34 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.32 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.32 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.3 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.3 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.3 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.29 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.29 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.26 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.25 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.24 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.24 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.24 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.23 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.22 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.22 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.2 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.19 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.18 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.16 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.16 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.16 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.15 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.14 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.12 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.12 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.11 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.07 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.05 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.98 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.97 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.95 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.94 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.94 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.92 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.92 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.92 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.87 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.85 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.82 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.81 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.77 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.75 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.75 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.73 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.73 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.72 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.71 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.7 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.69 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.67 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.67 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.66 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.65 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.65 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.64 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.64 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.63 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.63 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.62 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.59 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.58 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.57 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.57 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.54 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.54 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.52 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.5 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.49 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.48 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.46 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.44 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.43 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.43 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.41 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.41 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.4 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.31 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.3 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.28 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.23 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.19 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.14 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.12 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.11 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.1 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.06 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.05 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.02 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.0 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.0 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.0 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.99 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.96 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.9 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.87 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.78 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.76 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.75 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.72 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.71 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.71 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.7 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.7 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.69 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.63 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.62 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.61 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.6 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.6 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.57 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.56 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.55 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.54 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.52 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.52 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.5 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.47 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.45 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.45 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.43 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.43 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.42 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.39 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.37 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.36 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.34 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.33 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.31 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.3 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.23 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.22 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.22 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.2 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.19 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.18 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.18 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.18 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.08 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.07 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 97.01 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.98 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.96 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.94 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.93 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.89 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.84 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.83 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.74 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.73 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.73 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.7 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.66 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.64 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.63 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.62 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.59 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.5 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.44 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.42 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.39 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.39 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.38 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.31 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.27 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.25 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.24 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.22 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.22 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 96.22 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.21 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.17 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.11 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.08 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.04 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.02 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.01 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.99 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.99 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.98 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.81 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.8 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.79 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.7 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.59 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.54 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.48 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.46 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.42 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.17 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.06 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.0 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.89 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 94.88 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.87 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.84 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.82 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.6 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.49 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 94.47 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.38 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.17 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.03 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.01 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.82 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.79 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.76 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.73 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.49 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.32 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.26 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.12 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 93.09 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.08 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.94 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.88 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 92.84 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 92.8 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.72 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.71 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.64 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 92.58 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.29 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.12 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.01 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.89 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 91.83 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 91.66 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.52 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 91.49 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 91.47 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.27 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.79 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 90.6 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 90.45 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.12 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 89.91 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 89.69 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 89.48 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 89.17 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 88.87 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 88.73 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 88.59 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 88.55 | |
| PRK09687 | 280 | putative lyase; Provisional | 88.52 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 87.88 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 87.66 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 87.63 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 87.62 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 87.6 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 85.94 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 84.95 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 84.86 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 84.81 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 84.34 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 83.66 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 83.66 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 83.64 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 83.27 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 82.6 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 81.97 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 81.16 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 80.92 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 80.9 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 80.61 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 80.58 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 80.41 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 80.28 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-68 Score=559.41 Aligned_cols=463 Identities=17% Similarity=0.222 Sum_probs=432.4
Q ss_pred CCCccccccccccccccccCCCcc-cccccccCCCCChhhHHHHHHH-hcCCCCHHH--HHHHhhccccCCCCcCCHHHH
Q 010202 28 SSENCSHIVSSSPIESYCSDGARL-DHHQVLCVDSPRLPDIDVIISK-VHVGSSEDE--VFQSLKQDHVCNAIQPSHYLV 103 (515)
Q Consensus 28 ~~~~~~~~~~~~l~~~y~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~--~~~~~~~~~~~~g~~p~~~~~ 103 (515)
.+..++.++.|+||++|+|+|... +...|+.|+.||+++||++|.. .+.+...++ +|+.|.+. |+.||..||
T Consensus 216 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~----g~~Pd~~ty 291 (857)
T PLN03077 216 FGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMREL----SVDPDLMTI 291 (857)
T ss_pred cCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCCChhHH
Confidence 455678999999999999999875 7888999999999999999964 555555544 67777765 999999999
Q ss_pred HHHHHHhh--hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 010202 104 NKLIHRFK--DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGA 181 (515)
Q Consensus 104 ~~ll~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 181 (515)
+.+|.+|. ++.+.|.+++..+. +.|+.||..+|++|+++|+++|++++|.++|++|..++..+|+++ +.+|++.
T Consensus 292 ~~ll~a~~~~g~~~~a~~l~~~~~-~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~l---i~~~~~~ 367 (857)
T PLN03077 292 TSVISACELLGDERLGREMHGYVV-KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAM---ISGYEKN 367 (857)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHH-HhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHH---HHHHHhC
Confidence 99999997 48899999999994 679999999999999999999999999999999998888887776 8999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh-hcCCCCChhhHHHHHHHHHccCChhHHHHHH
Q 010202 182 GQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLEL-KSCIPPNAHTFNIFIHGWCKINRVDEAQWTI 260 (515)
Q Consensus 182 g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 260 (515)
|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+ +.+..++..+||+|+++|+++|++++|.++|
T Consensus 368 g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf 447 (857)
T PLN03077 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF 447 (857)
T ss_pred CCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999995 5689999999999999999999999999999
Q ss_pred HHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010202 261 QEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKP 340 (515)
Q Consensus 261 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 340 (515)
++|.+ +|..+|+++|.+|++.|+.++|+++|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+.+
T Consensus 448 ~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~ 522 (857)
T PLN03077 448 HNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF 522 (857)
T ss_pred HhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCc
Confidence 99975 5889999999999999999999999999986 599999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHH
Q 010202 341 DSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPL 420 (515)
Q Consensus 341 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l 420 (515)
|..++++||++|+++|++++|..+|+ .+ .||..+||++|.+|+++|+.++|+++|++|.+.| +.||..||+.+
T Consensus 523 ~~~~~naLi~~y~k~G~~~~A~~~f~-~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g-~~Pd~~T~~~l 595 (857)
T PLN03077 523 DGFLPNALLDLYVRCGRMNYAWNQFN-SH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG-VNPDEVTFISL 595 (857)
T ss_pred cceechHHHHHHHHcCCHHHHHHHHH-hc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCcccHHHH
Confidence 99999999999999999999999999 66 4899999999999999999999999999999999 99999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010202 421 LKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKH 500 (515)
Q Consensus 421 l~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 500 (515)
+.+|++.|++++|. ++|+.|.+++|+.|+..+|++++++|++.|++++|.+++++| ++.||..+|.+|+.+|..+|
T Consensus 596 l~a~~~~g~v~ea~-~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~ 671 (857)
T PLN03077 596 LCACSRSGMVTQGL-EYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHR 671 (857)
T ss_pred HHHHhhcChHHHHH-HHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcC
Confidence 99999999999999 999999977999999999999999999999999999999999 58999999999999998888
Q ss_pred CHHHHHHHHHHHHh
Q 010202 501 MYDAAEKIEAVMKK 514 (515)
Q Consensus 501 ~~~~a~~~~~~m~~ 514 (515)
+.+.++.+.+.+.+
T Consensus 672 ~~e~~e~~a~~l~~ 685 (857)
T PLN03077 672 HVELGELAAQHIFE 685 (857)
T ss_pred ChHHHHHHHHHHHh
Confidence 88887777766554
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-67 Score=553.12 Aligned_cols=465 Identities=15% Similarity=0.237 Sum_probs=405.0
Q ss_pred CCCccccccccccccccccCCCcc-cccccccCCCCChhhHHHHHHHh-cCCCCHHH--HHHHhhccccCCCCcCCHHHH
Q 010202 28 SSENCSHIVSSSPIESYCSDGARL-DHHQVLCVDSPRLPDIDVIISKV-HVGSSEDE--VFQSLKQDHVCNAIQPSHYLV 103 (515)
Q Consensus 28 ~~~~~~~~~~~~l~~~y~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~--~~~~~~~~~~~~g~~p~~~~~ 103 (515)
.+..++..++|+||++|+++|... +..+|+.|++||+++||++|..+ +.+...++ +|+.|... |+.||.+||
T Consensus 115 ~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~----g~~Pd~~t~ 190 (857)
T PLN03077 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWA----GVRPDVYTF 190 (857)
T ss_pred cCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCCChhHH
Confidence 445577889999999999999875 88999999999999999999654 44444433 67777664 999999999
Q ss_pred HHHHHHhhh--CHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 010202 104 NKLIHRFKD--DWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGA 181 (515)
Q Consensus 104 ~~ll~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 181 (515)
+.+|++|++ ++..+.+++.++. +.|+.+|+.++++||++|+++|++++|.++|++|..++..+|+++ +.+|++.
T Consensus 191 ~~ll~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~l---i~~~~~~ 266 (857)
T PLN03077 191 PCVLRTCGGIPDLARGREVHAHVV-RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAM---ISGYFEN 266 (857)
T ss_pred HHHHHHhCCccchhhHHHHHHHHH-HcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHH---HHHHHhC
Confidence 999999974 7888999999995 679999999999999999999999999999999999888887776 8999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh-hcCCCCChhhHHHHHHHHHccCChhHHHHHH
Q 010202 182 GQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLEL-KSCIPPNAHTFNIFIHGWCKINRVDEAQWTI 260 (515)
Q Consensus 182 g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 260 (515)
|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++..+ +.++.||..+||.|+.+|++.|++++|.++|
T Consensus 267 g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf 346 (857)
T PLN03077 267 GECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVF 346 (857)
T ss_pred CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999995 5689999999999999999999999999999
Q ss_pred HHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010202 261 QEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKP 340 (515)
Q Consensus 261 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 340 (515)
++|.. ||..+|+++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|
T Consensus 347 ~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~ 422 (857)
T PLN03077 347 SRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS 422 (857)
T ss_pred hhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCc
Confidence 99974 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHH
Q 010202 341 DSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPL 420 (515)
Q Consensus 341 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l 420 (515)
+..++++||++|+++|++++|.++|+ .|.+ +|..+|+.+|.+|++.|+.++|+++|++|.. + ++||..||+.+
T Consensus 423 ~~~~~n~Li~~y~k~g~~~~A~~vf~-~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~-~~pd~~t~~~l 495 (857)
T PLN03077 423 YVVVANALIEMYSKCKCIDKALEVFH-NIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-T-LKPNSVTLIAA 495 (857)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHH-hCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-C-CCCCHhHHHHH
Confidence 99999999999999999999999999 8875 6889999999999999999999999999975 4 78888877777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHcCCC------------------------------CCCHHHHHHHHHHHHhcCCHHHH
Q 010202 421 LKSCFKTGKTDECLSQLLDDMVNKHHL------------------------------SLDITTYTLVIHGLCRANKCEWA 470 (515)
Q Consensus 421 l~~~~~~g~~~~A~~~~~~~~~~~~~~------------------------------~p~~~~~~~li~~~~~~g~~~~A 470 (515)
+.+|++.|..+.+. +++..+.+ .|+ .||..+|++||.+|++.|+.++|
T Consensus 496 L~a~~~~g~l~~~~-~i~~~~~~-~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A 573 (857)
T PLN03077 496 LSACARIGALMCGK-EIHAHVLR-TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMA 573 (857)
T ss_pred HHHHhhhchHHHhH-HHHHHHHH-hCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHH
Confidence 76665555554444 44443333 221 45666777777777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010202 471 YLLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVMK 513 (515)
Q Consensus 471 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 513 (515)
.++|++|.+.|+.||..||..++.+|.+.|++++|.++|+.|.
T Consensus 574 ~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 574 VELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777775
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-65 Score=529.48 Aligned_cols=470 Identities=19% Similarity=0.288 Sum_probs=426.5
Q ss_pred cccccccccccccCCCcc-cccccccCCCCChhhHHHHH-----HHhcCCCCHHHHHHHhhccccCCCCcCCHHHHHHHH
Q 010202 34 HIVSSSPIESYCSDGARL-DHHQVLCVDSPRLPDIDVII-----SKVHVGSSEDEVFQSLKQDHVCNAIQPSHYLVNKLI 107 (515)
Q Consensus 34 ~~~~~~l~~~y~~~~~~~-~~~~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~ll 107 (515)
......+++.|+++|... +..+|+.|+.++++.|+.++ ..+...+..++.++.+.. | ..||..+|+.+|
T Consensus 370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~-M----~~pd~~Tyn~LL 444 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKL-I----RNPTLSTFNMLM 444 (1060)
T ss_pred chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHH-c----CCCCHHHHHHHH
Confidence 344555667778888754 78889999888887776654 334444444443333322 2 129999999999
Q ss_pred HHhh--hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCH
Q 010202 108 HRFK--DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHI-VTLNTIAKVMRRFSGAGQW 184 (515)
Q Consensus 108 ~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~ 184 (515)
.+|+ ++++.|.++|+.|. ..|+.||..+|+.||++|+++|++++|.++|++|.+.+. ++..+++.+|.+|++.|++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~-~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQ-EAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 9998 48999999999994 679999999999999999999999999999999998775 6899999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh---cCCCCChhhHHHHHHHHHccCChhHHHHHHH
Q 010202 185 EDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELK---SCIPPNAHTFNIFIHGWCKINRVDEAQWTIQ 261 (515)
Q Consensus 185 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 261 (515)
++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .++.||..+|+++|.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999985 3689999999999999999999999999999
Q ss_pred HHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 010202 262 EMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPD 341 (515)
Q Consensus 262 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 341 (515)
+|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHH
Q 010202 342 SRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLL 421 (515)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll 421 (515)
..+|++||.+|++.|++++|.++|+ .|...|+.||..+||.||.+|++.|++++|+++|++|.+.| +.||..||+.++
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~-eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G-i~Pd~~Ty~sLL 761 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYE-DIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG-LCPNTITYSILL 761 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHH
Confidence 9999999999999999999999999 99999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHHH
Q 010202 422 KSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCR----A-------------------NKCEWAYLLFKEMI 478 (515)
Q Consensus 422 ~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~-------------------g~~~~A~~~~~~m~ 478 (515)
.+|++.|++++|. +++.+|.+ .|+.||..+|++++..|.+ + +..++|..+|++|.
T Consensus 762 ~a~~k~G~le~A~-~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~ 839 (1060)
T PLN03218 762 VASERKDDADVGL-DLLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETI 839 (1060)
T ss_pred HHHHHCCCHHHHH-HHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHH
Confidence 9999999999999 99999988 8999999999999876432 1 23468999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010202 479 GHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVMK 513 (515)
Q Consensus 479 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 513 (515)
+.|+.||..||..++.++...+..+.+.++++.|.
T Consensus 840 ~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~ 874 (1060)
T PLN03218 840 SAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG 874 (1060)
T ss_pred HCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc
Confidence 99999999999999977788888999888888764
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-63 Score=515.21 Aligned_cols=472 Identities=15% Similarity=0.231 Sum_probs=432.0
Q ss_pred ccccccccccccccCCCcc-cccccccCCCCChhhHHHHHHHhcCCCCHHH---HHHHhhccccCCCCcCCHHHHHHHHH
Q 010202 33 SHIVSSSPIESYCSDGARL-DHHQVLCVDSPRLPDIDVIISKVHVGSSEDE---VFQSLKQDHVCNAIQPSHYLVNKLIH 108 (515)
Q Consensus 33 ~~~~~~~l~~~y~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~g~~p~~~~~~~ll~ 108 (515)
+.+..+.++..|++.|... +...|..|+.||+.+||.++..+......+. +|+.|.+. |+.||..+|+.+|.
T Consensus 405 ~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~----Gl~pD~~tynsLI~ 480 (1060)
T PLN03218 405 DKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEA----GLKADCKLYTTLIS 480 (1060)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc----CCCCCHHHHHHHHH
Confidence 4455666788888888754 7777888999999999999965444334333 67777664 99999999999999
Q ss_pred Hhh--hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHH
Q 010202 109 RFK--DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHI-VTLNTIAKVMRRFSGAGQWE 185 (515)
Q Consensus 109 ~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~ 185 (515)
+|+ ++.+.|.++|+.|. ..|+.||..+|+.+|++|++.|++++|.++|++|...+. ++..+|+.++.+|++.|+++
T Consensus 481 ~y~k~G~vd~A~~vf~eM~-~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~d 559 (1060)
T PLN03218 481 TCAKSGKVDAMFEVFHEMV-NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVD 559 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence 997 58999999999995 578999999999999999999999999999999988765 78999999999999999999
Q ss_pred HHHHHHHHHhh--CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh-cCCCCChhhHHHHHHHHHccCChhHHHHHHHH
Q 010202 186 DAVRTFDELGT--FGLEKNTETMNLLLDTLCKEGKVELARSVFLELK-SCIPPNAHTFNIFIHGWCKINRVDEAQWTIQE 262 (515)
Q Consensus 186 ~A~~~~~~m~~--~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 262 (515)
+|.++|++|.. .|+.||..+|++++.+|++.|++++|.++|+.|. .+++|+..+|+.+|.+|++.|++++|.++|++
T Consensus 560 eA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~e 639 (1060)
T PLN03218 560 RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDD 639 (1060)
T ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999999976 6789999999999999999999999999999965 57899999999999999999999999999999
Q ss_pred HHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH
Q 010202 263 MKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDS 342 (515)
Q Consensus 263 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 342 (515)
|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 640 M~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdv 719 (1060)
T PLN03218 640 MKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTV 719 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHH
Q 010202 343 RFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLK 422 (515)
Q Consensus 343 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~ 422 (515)
.+|+.||.+|++.|++++|.++|+ .|...|+.||..+|+.++.+|++.|++++|.++|.+|.+.| +.||..+|+.++.
T Consensus 720 vtyN~LI~gy~k~G~~eeAlelf~-eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G-i~pd~~tynsLIg 797 (1060)
T PLN03218 720 STMNALITALCEGNQLPKALEVLS-EMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG-IKPNLVMCRCITG 797 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHH
Confidence 999999999999999999999999 99999999999999999999999999999999999999999 9999999999987
Q ss_pred HHHh----c-------------------CChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010202 423 SCFK----T-------------------GKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIG 479 (515)
Q Consensus 423 ~~~~----~-------------------g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 479 (515)
.|.+ . +..++|+ .+|++|.+ .|+.||..+|+.++.++++.+..+.+.+++++|..
T Consensus 798 lc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al-~lf~eM~~-~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~ 875 (1060)
T PLN03218 798 LCLRRFEKACALGEPVVSFDSGRPQIENKWTSWAL-MVYRETIS-AGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGI 875 (1060)
T ss_pred HHHHHHHHHhhhhhhhhhhhccccccccchHHHHH-HHHHHHHH-CCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhcc
Confidence 6542 1 1236788 99999999 89999999999999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010202 480 HDITPRYQTCRLILDEVKQKHMYDAAEKIEAVMKKL 515 (515)
Q Consensus 480 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~l 515 (515)
.+..|+..+|++++.++.+. .++|..++++|.++
T Consensus 876 ~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~ 909 (1060)
T PLN03218 876 SADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASL 909 (1060)
T ss_pred CCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHc
Confidence 88899999999999998433 36899999999763
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-63 Score=514.92 Aligned_cols=433 Identities=16% Similarity=0.270 Sum_probs=403.3
Q ss_pred CCChhhHHHHHHHh-cCCCCHHH--HHHHhhccccCCCCcCCHHHHHHHHHHhh--hCHHHHHHHHHHhccCCCCCCCHH
Q 010202 61 SPRLPDIDVIISKV-HVGSSEDE--VFQSLKQDHVCNAIQPSHYLVNKLIHRFK--DDWKSALGIFRWAGSCPGYEHSSE 135 (515)
Q Consensus 61 ~~~~~~~~~~i~~~-~~~~~~~~--~~~~~~~~~~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~~~~~~~~~~~~~ 135 (515)
.++.++|+.+|..+ +.+...++ +|+.|... .+..||..||+.++.+|. ++.+.+.+++..+. ..|+.||..
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~---~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~-~~g~~~~~~ 159 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAG---CPFTLPASTYDALVEACIALKSIRCVKAVYWHVE-SSGFEPDQY 159 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HhCCCcchH
Confidence 45677999999654 44544443 67777643 357899999999999997 48888999999994 579999999
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 010202 136 IYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCK 215 (515)
Q Consensus 136 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 215 (515)
+|+.++++|+++|++++|.++|++|.+++..+|+++ +.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++
T Consensus 160 ~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~l---i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~ 236 (697)
T PLN03081 160 MMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTI---IGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG 236 (697)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHH---HHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhc
Confidence 999999999999999999999999998877777776 99999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHH-hhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHH
Q 010202 216 EGKVELARSVFLE-LKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYEL 294 (515)
Q Consensus 216 ~~~~~~a~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 294 (515)
.|..+.+.+++.. .+.+..+|..+|++|+++|+++|++++|.++|++|.. +|..+||++|.+|++.|++++|+++
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~l 312 (697)
T PLN03081 237 LGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCL 312 (697)
T ss_pred CCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHH
Confidence 9999999999998 5578999999999999999999999999999999974 6899999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCC
Q 010202 295 LDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGV 374 (515)
Q Consensus 295 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 374 (515)
|++|.+.|+.||..||++++.+|++.|++++|.+++..|.+.|+.||..+|++|+++|+++|++++|.++|+ .|.+
T Consensus 313 f~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~-~m~~--- 388 (697)
T PLN03081 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFD-RMPR--- 388 (697)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHH-hCCC---
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 8864
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHH
Q 010202 375 APDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTY 454 (515)
Q Consensus 375 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~ 454 (515)
||..+||+||.+|+++|+.++|+++|++|.+.| +.||..||+.++.+|++.|++++|. ++|+.|.+++|+.|+..+|
T Consensus 389 -~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g-~~Pd~~T~~~ll~a~~~~g~~~~a~-~~f~~m~~~~g~~p~~~~y 465 (697)
T PLN03081 389 -KNLISWNALIAGYGNHGRGTKAVEMFERMIAEG-VAPNHVTFLAVLSACRYSGLSEQGW-EIFQSMSENHRIKPRAMHY 465 (697)
T ss_pred -CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHhcCCcHHHHH-HHHHHHHHhcCCCCCccch
Confidence 799999999999999999999999999999999 9999999999999999999999999 9999999888999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010202 455 TLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVMKK 514 (515)
Q Consensus 455 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 514 (515)
++++++|++.|++++|.+++++| +..|+..+|++|+.+|...|+++.|.++++.+.+
T Consensus 466 ~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~ 522 (697)
T PLN03081 466 ACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG 522 (697)
T ss_pred HhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 99999999999999999999987 6899999999999999999999999988887754
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-59 Score=483.93 Aligned_cols=457 Identities=18% Similarity=0.254 Sum_probs=418.3
Q ss_pred cccccccccccccCCCcc-cccccccC-----CCCChhhHHHHHHHhcCCCCH---HHHHHHhhccccCCCCcCCHHHHH
Q 010202 34 HIVSSSPIESYCSDGARL-DHHQVLCV-----DSPRLPDIDVIISKVHVGSSE---DEVFQSLKQDHVCNAIQPSHYLVN 104 (515)
Q Consensus 34 ~~~~~~l~~~y~~~~~~~-~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~g~~p~~~~~~ 104 (515)
.+..+++|..|++.|... +...|..| ..||..+|++++..+...... .+++..|... |+.||..+++
T Consensus 87 ~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~----g~~~~~~~~n 162 (697)
T PLN03081 87 GVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESS----GFEPDQYMMN 162 (697)
T ss_pred ceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh----CCCcchHHHH
Confidence 346778889999999754 66666544 257899999999654333333 4467777664 9999999999
Q ss_pred HHHHHhh--hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhc
Q 010202 105 KLIHRFK--DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHI-VTLNTIAKVMRRFSGA 181 (515)
Q Consensus 105 ~ll~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~li~~~~~~ 181 (515)
.++..+. ++.+.|.++|+.|. .||..+|+.++.+|++.|++++|.++|++|.+.+. ++..++..++.++++.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~ 237 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMP-----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL 237 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC
Confidence 9999987 58999999999995 37999999999999999999999999999987665 7888999999999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHH
Q 010202 182 GQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQ 261 (515)
Q Consensus 182 g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 261 (515)
|..+.+.+++..+.+.|+.||..+|++|+.+|++.|++++|.++|++|.. +|..+||.+|.+|++.|++++|.++|+
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE---KTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred CcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC---CChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999864 799999999999999999999999999
Q ss_pred HHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 010202 262 EMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPD 341 (515)
Q Consensus 262 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 341 (515)
+|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++++++|++.|++++|.++|++|. .||
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d 390 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKN 390 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 578
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHH
Q 010202 342 SRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLL 421 (515)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll 421 (515)
..+||+||.+|++.|+.++|.++|+ +|.+.|+.||..||+.++.+|++.|..++|.++|+.|.+..++.|+..+|+.++
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~-~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li 469 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFE-RMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHH-HHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence 9999999999999999999999999 999999999999999999999999999999999999987433999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC
Q 010202 422 KSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPR-YQTCRLILDEVKQKH 500 (515)
Q Consensus 422 ~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g 500 (515)
.+|++.|++++|. +++++| ++.|+..+|++|+.+|...|+++.|.++++++.+ +.|+ ..+|..+++.|.+.|
T Consensus 470 ~~l~r~G~~~eA~-~~~~~~----~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G 542 (697)
T PLN03081 470 ELLGREGLLDEAY-AMIRRA----PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSG 542 (697)
T ss_pred HHHHhcCCHHHHH-HHHHHC----CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCC
Confidence 9999999999999 887655 6789999999999999999999999999999974 5664 679999999999999
Q ss_pred CHHHHHHHHHHHHh
Q 010202 501 MYDAAEKIEAVMKK 514 (515)
Q Consensus 501 ~~~~a~~~~~~m~~ 514 (515)
++++|.++++.|++
T Consensus 543 ~~~~A~~v~~~m~~ 556 (697)
T PLN03081 543 RQAEAAKVVETLKR 556 (697)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999999985
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-25 Score=242.01 Aligned_cols=387 Identities=12% Similarity=0.076 Sum_probs=287.9
Q ss_pred hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010202 112 DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTF 191 (515)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 191 (515)
++++.|...++.+... .+.+..++..+...+.+.|+.++|..+|+++...++.+...+..++..|.+.|++++|++++
T Consensus 513 g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 590 (899)
T TIGR02917 513 GNPDDAIQRFEKVLTI--DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAIL 590 (899)
T ss_pred CCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 4566666666666421 23456666677777777777777777777776666666666666677777777777777777
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCcc
Q 010202 192 DELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPC 271 (515)
Q Consensus 192 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 271 (515)
+.+.+.. +.+...|..+..++...|++++|...|+.+....+.+...+..+..++.+.|++++|...|+++.+.. +.+
T Consensus 591 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 668 (899)
T TIGR02917 591 NEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDN 668 (899)
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCC
Confidence 7776543 45666777777777777777777777777555555666777777777777777777777777776653 335
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 010202 272 VISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYT 351 (515)
Q Consensus 272 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 351 (515)
..+|..++..+...|++++|.++++.+.+.+ +.+...+..+...+...|++++|.+.++.+.+.+ |+..++..+...
T Consensus 669 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~ 745 (899)
T TIGR02917 669 TEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRA 745 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHH
Confidence 6677777777777788888888877777664 3456677777778888888888888888887753 444666777888
Q ss_pred HHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChH
Q 010202 352 LGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTD 431 (515)
Q Consensus 352 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~ 431 (515)
+.+.|++++|...++ .+.+.. +.+...++.+...|...|++++|.++|+++.+.. +++...+..+...+...|+ .
T Consensus 746 ~~~~g~~~~A~~~~~-~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~-~ 820 (899)
T TIGR02917 746 LLASGNTAEAVKTLE-AWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA--PDNAVVLNNLAWLYLELKD-P 820 (899)
T ss_pred HHHCCCHHHHHHHHH-HHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCc-H
Confidence 888888888888887 554432 3467788888888888899999999998888865 5667788888888888888 7
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010202 432 ECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAV 511 (515)
Q Consensus 432 ~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 511 (515)
+|+ .+++++.+.. +-+...+..+...+...|++++|.+.++++.+.+ +.+..++..+..++.+.|++++|++++++
T Consensus 821 ~A~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 896 (899)
T TIGR02917 821 RAL-EYAEKALKLA--PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATGRKAEARKELDK 896 (899)
T ss_pred HHH-HHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 788 8888887732 2245667788889999999999999999999855 33888999999999999999999999998
Q ss_pred HHh
Q 010202 512 MKK 514 (515)
Q Consensus 512 m~~ 514 (515)
|.+
T Consensus 897 ~~~ 899 (899)
T TIGR02917 897 LLN 899 (899)
T ss_pred HhC
Confidence 863
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-25 Score=235.92 Aligned_cols=366 Identities=12% Similarity=0.072 Sum_probs=192.9
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 010202 135 EIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLC 214 (515)
Q Consensus 135 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 214 (515)
..+..+...+.+.|++++|.+.|+++...++.+..++..+...+.+.|++++|..+|+++.+.+ +.+...+..+...+.
T Consensus 500 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 578 (899)
T TIGR02917 500 PAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYL 578 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444444444444444332 223334444444455
Q ss_pred HcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHH
Q 010202 215 KEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYEL 294 (515)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 294 (515)
..|++++|..+++.+....+.+...|..+..+|.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.+.
T Consensus 579 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 657 (899)
T TIGR02917 579 GKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITS 657 (899)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555555444444445555555555555555555555555554432 22344455555555555555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCC
Q 010202 295 LDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGV 374 (515)
Q Consensus 295 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 374 (515)
++++.+.. +.+..++..+...+...|++++|.++++.+.+.. +.+...+..+...+.+.|++++|...|+ .+...
T Consensus 658 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~-~~~~~-- 732 (899)
T TIGR02917 658 LKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYR-KALKR-- 732 (899)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHH-HHHhh--
Confidence 55554432 2234455555555555555555555555555443 3444555555555566666666666665 43332
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHH
Q 010202 375 APDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTY 454 (515)
Q Consensus 375 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~ 454 (515)
.|+..++..++.++.+.|++++|.+.++++.+.. +.+...+..+...|...|+.++|. ..++++.+.. +.+...+
T Consensus 733 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~-~~~~~~~~~~--p~~~~~~ 807 (899)
T TIGR02917 733 APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH--PNDAVLRTALAELYLAQKDYDKAI-KHYRTVVKKA--PDNAVVL 807 (899)
T ss_pred CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHH-HHHHHHHHhC--CCCHHHH
Confidence 2333455555666666666666666666665543 444555666666666666666666 6666666521 2345566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010202 455 TLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVMKK 514 (515)
Q Consensus 455 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 514 (515)
..+...+...|+ ++|++.++++.+.. +-+..++..+...+...|++++|.++++.+.+
T Consensus 808 ~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 865 (899)
T TIGR02917 808 NNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVN 865 (899)
T ss_pred HHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666666666666 66666666666421 22334555556666777777777777777654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-21 Score=188.57 Aligned_cols=305 Identities=13% Similarity=0.099 Sum_probs=155.6
Q ss_pred HHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHHcCC
Q 010202 142 DILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKN---TETMNLLLDTLCKEGK 218 (515)
Q Consensus 142 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~~~ 218 (515)
..+...|++++|...|+++.+.++.++.++..+...+...|++++|..+++.+.+.+..++ ...+..+...|...|+
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3445566777777777777766666666666666677777777777777766665421111 1344555555556666
Q ss_pred HHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 010202 219 VELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEM 298 (515)
Q Consensus 219 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 298 (515)
+++|..+|+++....+.+..+++.++..+.+.|++++|.+.++.+.+.+..++...
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------------------ 178 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE------------------------ 178 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH------------------------
Confidence 66666666554443344455555555555555555555555555554321111000
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCH
Q 010202 299 QAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDT 378 (515)
Q Consensus 299 ~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 378 (515)
....+..+...+.+.|++++|.+.++++.+.. +.+...+..+...|.+.|++++|...|+ .+...+.....
T Consensus 179 -------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~p~~~~ 249 (389)
T PRK11788 179 -------IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALE-RVEEQDPEYLS 249 (389)
T ss_pred -------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHH-HHHHHChhhHH
Confidence 00122233334444445555555544444432 2223344444455555555555555555 33332111112
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 010202 379 STFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVI 458 (515)
Q Consensus 379 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li 458 (515)
.+++.++.+|...|++++|...++++.+. .|+...+..+...+.+.|++++|. .+++++.+. .|+...+..++
T Consensus 250 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~-~~l~~~l~~---~P~~~~~~~l~ 322 (389)
T PRK11788 250 EVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQ-ALLREQLRR---HPSLRGFHRLL 322 (389)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHH-HHHHHHHHh---CcCHHHHHHHH
Confidence 34455555555555555555555555552 244444455555555555555555 555555441 35555555555
Q ss_pred HHHHh---cCCHHHHHHHHHHHHhCCCCCCH
Q 010202 459 HGLCR---ANKCEWAYLLFKEMIGHDITPRY 486 (515)
Q Consensus 459 ~~~~~---~g~~~~A~~~~~~m~~~~~~p~~ 486 (515)
..+.. .|+.+++..++++|.+.++.|++
T Consensus 323 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 323 DYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred HHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 44443 33555555555555554444443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-21 Score=188.50 Aligned_cols=322 Identities=15% Similarity=0.142 Sum_probs=255.3
Q ss_pred CCcCCHHHHHHHHHHhhhCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCC----HHH
Q 010202 95 AIQPSHYLVNKLIHRFKDDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVT----LNT 170 (515)
Q Consensus 95 g~~p~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~ 170 (515)
+.......+..+.....++.+.|...|..+... .+.+..++..+...|...|++++|..+++.+....... ...
T Consensus 32 ~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 109 (389)
T PRK11788 32 SNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLA 109 (389)
T ss_pred hhhccHHHHHHHHHHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 344556666666666668899999999999743 24467789999999999999999999999987754322 345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC-----hhhHHHHHH
Q 010202 171 IAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPN-----AHTFNIFIH 245 (515)
Q Consensus 171 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~li~ 245 (515)
+..++..|.+.|++++|+++|+++.+.. +++..++..++..+...|++++|.+.++.+....+.+ ...+..+..
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~ 188 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ 188 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 6778999999999999999999998753 4578899999999999999999999999965433322 224567788
Q ss_pred HHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 010202 246 GWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEE 325 (515)
Q Consensus 246 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 325 (515)
.+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++...+......++..++.+|.+.|++++
T Consensus 189 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 267 (389)
T PRK11788 189 QALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAE 267 (389)
T ss_pred HHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHH
Confidence 8889999999999999998764 334667888889999999999999999998876433234667888899999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHh---CCCHHHHHHHHH
Q 010202 326 AIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSH---HGHHEKAFHVLE 402 (515)
Q Consensus 326 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~ 402 (515)
|.+.++.+.+. .|+...+..++..+.+.|++++|..+++ .+.+. .|+...++.++..+.. .|+.++++.+++
T Consensus 268 A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~-~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~ 342 (389)
T PRK11788 268 GLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLR-EQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLR 342 (389)
T ss_pred HHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHH-HHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHH
Confidence 99999998876 4565666888889999999999999998 55443 5888888888877664 558889999999
Q ss_pred HHHhCCCCCCCHHhHHHHHHHHHhcCChHH
Q 010202 403 EMNKLEHCKPNVQTFHPLLKSCFKTGKTDE 432 (515)
Q Consensus 403 ~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 432 (515)
+|.+.+ +.|++. ..|.++|-..+
T Consensus 343 ~~~~~~-~~~~p~------~~c~~cg~~~~ 365 (389)
T PRK11788 343 DLVGEQ-LKRKPR------YRCRNCGFTAR 365 (389)
T ss_pred HHHHHH-HhCCCC------EECCCCCCCCc
Confidence 998877 677765 34777776654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-20 Score=171.83 Aligned_cols=329 Identities=16% Similarity=0.191 Sum_probs=176.8
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH-HHHHH
Q 010202 133 SSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETM-NLLLD 211 (515)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~ll~ 211 (515)
-..+|+.+.+.+-..|++++|+.+++.+.+..+...+++..+..++...|+.+.|.+.|.+..+. .|+.... +.+..
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgn 192 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhH
Confidence 45677888888888888888888888888877777788888888888888888888877777663 4443322 22333
Q ss_pred HHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCcc-HhHHHHHHHHHHhcCChhH
Q 010202 212 TLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPC-VISYSTIIQSYCRQYNFSK 290 (515)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~ 290 (515)
.+...|++++|...|.+..+..+.-..+|..|...+-..|+...|+..|++..+.. |+ ...|-.|...|...+.+++
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchH
Confidence 44445666666655555333333334455555555555555555555555555432 22 2344444444444444444
Q ss_pred H----------------------------------HHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010202 291 V----------------------------------YELLDEMQAQGCPPN-VVTYTTVMSYLAKSGDFEEAIRITEKMKI 335 (515)
Q Consensus 291 A----------------------------------~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 335 (515)
| +..|++..+. .|+ ..+|+.+..++-..|+..+|.+.+.+...
T Consensus 271 Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 271 AVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 4 4444444433 222 34455555555555555555555555544
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCC-
Q 010202 336 VGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPD-TSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPN- 413 (515)
Q Consensus 336 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~- 413 (515)
.. +.-....+.|...|...|.+++|..+|. ...+ +.|. ....+.|...|-+.|++++|+..+++..+ +.|+
T Consensus 349 l~-p~hadam~NLgni~~E~~~~e~A~~ly~-~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~f 421 (966)
T KOG4626|consen 349 LC-PNHADAMNNLGNIYREQGKIEEATRLYL-KALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTF 421 (966)
T ss_pred hC-CccHHHHHHHHHHHHHhccchHHHHHHH-HHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchH
Confidence 32 2233444445555555555555555554 2221 1222 23445555555555555555555555554 3444
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010202 414 VQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLD-ITTYTLVIHGLCRANKCEWAYLLFKEMI 478 (515)
Q Consensus 414 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 478 (515)
...|+.+...|-..|+.+.|+ +.+.+.+. +.|. ....+.|...|..+|+..+|+.-+++.+
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~-q~y~rAI~---~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAI-QCYTRAIQ---INPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHH-HHHHHHHh---cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 234555555555555555555 44444443 2333 3344455555555555555555555554
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5e-19 Score=180.10 Aligned_cols=326 Identities=12% Similarity=0.047 Sum_probs=153.7
Q ss_pred HHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 010202 142 DILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVEL 221 (515)
Q Consensus 142 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 221 (515)
..+.+.|++++|..+++.+....+.+..++..++.+....|++++|++.|+++.+.. +.+...+..+...+...|++++
T Consensus 50 ~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~ 128 (656)
T PRK15174 50 IACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYAT 128 (656)
T ss_pred HHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHH
Confidence 334445555555555555555555555555555555555555555555555555432 2234444445555555555555
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 010202 222 ARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQ 301 (515)
Q Consensus 222 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 301 (515)
|...+++.....|.+...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|+..++.+.+.
T Consensus 129 Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~ 206 (656)
T PRK15174 129 VADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPF 206 (656)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhc
Confidence 5555555433334445555555555555555555555555444332 1112222222 2244455555555555554443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHhhchhCCCCCC
Q 010202 302 GCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQE----AVYVYQVEMPENGVAPD 377 (515)
Q Consensus 302 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~~~~~~ 377 (515)
...++......+..++...|++++|.+.++++.+.. +.+...+..+...|...|++++ |...|+ ...... +.+
T Consensus 207 ~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~-~Al~l~-P~~ 283 (656)
T PRK15174 207 FALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWR-HALQFN-SDN 283 (656)
T ss_pred CCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHH-HHHhhC-CCC
Confidence 222222333333444455555555555555555443 3334444555555555555543 455554 332221 113
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCH-HHHHH
Q 010202 378 TSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDI-TTYTL 456 (515)
Q Consensus 378 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~-~~~~~ 456 (515)
...+..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|+ ..++.+... .|+. ..+..
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--P~~~~a~~~La~~l~~~G~~~eA~-~~l~~al~~---~P~~~~~~~~ 357 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSLATH--PDLPYVRAMYARALRQVGQYTAAS-DEFVQLARE---KGVTSKWNRY 357 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHh---CccchHHHHH
Confidence 3445555555555555555555555555432 222333444445555555555555 555555442 2222 12222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 010202 457 VIHGLCRANKCEWAYLLFKEMIG 479 (515)
Q Consensus 457 li~~~~~~g~~~~A~~~~~~m~~ 479 (515)
+..++...|+.++|...|++..+
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 33445555555555555555543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.8e-18 Score=173.56 Aligned_cols=390 Identities=11% Similarity=0.022 Sum_probs=268.7
Q ss_pred hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010202 112 DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTF 191 (515)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 191 (515)
++++.|+..|..+.. ..|++..|..+...|.+.|++++|++.++...+.++....++..+..+|...|++++|+.-|
T Consensus 141 ~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~ 217 (615)
T TIGR00990 141 KDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDL 217 (615)
T ss_pred CCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 588999999998863 34678889999999999999999999999999988888899999999999999999999888
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC----------------------------CCCC-hhhHHH
Q 010202 192 DELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSC----------------------------IPPN-AHTFNI 242 (515)
Q Consensus 192 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----------------------------~~~~-~~~~~~ 242 (515)
......+-..+.. ...++..+........+...++.-... ..+. ...+..
T Consensus 218 ~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (615)
T TIGR00990 218 TASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQ 296 (615)
T ss_pred HHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHH
Confidence 7665432111111 111111111100011111111110000 0000 000111
Q ss_pred HHHHH---HccCChhHHHHHHHHHHhCC-C-CccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010202 243 FIHGW---CKINRVDEAQWTIQEMKGHG-C-HPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYL 317 (515)
Q Consensus 243 li~~~---~~~g~~~~A~~~~~~~~~~~-~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 317 (515)
+...+ ...+++++|.+.|++..+.+ . +.....|+.+...+...|++++|+..+++..... +-+..+|..+...+
T Consensus 297 l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~ 375 (615)
T TIGR00990 297 LGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMN 375 (615)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHH
Confidence 11110 12367888999999888754 1 2345667888888888999999999999888752 22356788888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 010202 318 AKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKA 397 (515)
Q Consensus 318 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 397 (515)
...|++++|...++++.+.. +.+..++..+...|...|++++|...|+ ...+.. +.+...+..+...+.+.|++++|
T Consensus 376 ~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~-kal~l~-P~~~~~~~~la~~~~~~g~~~eA 452 (615)
T TIGR00990 376 LELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQ-KSIDLD-PDFIFSHIQLGVTQYKEGSIASS 452 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHcC-ccCHHHHHHHHHHHHHCCCHHHH
Confidence 88999999999999888764 4567788888888999999999999998 554432 23466777788888899999999
Q ss_pred HHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCC-C---CH-HHHHHHHHHHHhcCCHHHHHH
Q 010202 398 FHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLS-L---DI-TTYTLVIHGLCRANKCEWAYL 472 (515)
Q Consensus 398 ~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-p---~~-~~~~~li~~~~~~g~~~~A~~ 472 (515)
+..|++..+.. +.+...+..+...+...|++++|+ ..+++......-. + +. ..++.....+...|++++|.+
T Consensus 453 ~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~-~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~ 529 (615)
T TIGR00990 453 MATFRRCKKNF--PEAPDVYNYYGELLLDQNKFDEAI-EKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAEN 529 (615)
T ss_pred HHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHH-HHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999988743 344677888888889999999998 8888877622110 0 11 112222223344689999999
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010202 473 LFKEMIGHDITPR-YQTCRLILDEVKQKHMYDAAEKIEAVMKK 514 (515)
Q Consensus 473 ~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 514 (515)
++++..+. .|+ ...+..+...+.+.|++++|++.++...+
T Consensus 530 ~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 530 LCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99988763 344 44677788888899999999998887654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.6e-20 Score=169.63 Aligned_cols=352 Identities=15% Similarity=0.131 Sum_probs=264.4
Q ss_pred HHHHHHHHHHhh--hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHH--------
Q 010202 100 HYLVNKLIHRFK--DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLN-------- 169 (515)
Q Consensus 100 ~~~~~~ll~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------- 169 (515)
..+|+.+-..+. ++...|+..++.+.+.. +..+..|..+..+|...|+.+.|.+.|.+..+-++....
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHH
Confidence 445554444443 35666666666665221 224556666666666666666666666665554442222
Q ss_pred --------------------------HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCHHHH
Q 010202 170 --------------------------TIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKN-TETMNLLLDTLCKEGKVELA 222 (515)
Q Consensus 170 --------------------------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~a 222 (515)
++..|...+-..|+...|++.|++..+. .|+ ...|-.|...|...+.++.|
T Consensus 194 lka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHH
Confidence 2222344455677777777777777763 454 46777888888888888888
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCcc-HhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 010202 223 RSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPC-VISYSTIIQSYCRQYNFSKVYELLDEMQAQ 301 (515)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 301 (515)
...|.+....-|....++..+...|...|.++.|++.+++..+.. |+ ...|+.|..++-..|+..+|.+.|.+.+..
T Consensus 272 vs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 272 VSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 888888555456667888888888999999999999999988763 44 578999999999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCC-HHH
Q 010202 302 GCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPD-TST 380 (515)
Q Consensus 302 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~ 380 (515)
. +....+.+.+...|...|.++.|..+|....+.. +--....+.|...|-+.|++++|...|+ +... ++|+ ...
T Consensus 350 ~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Yk-ealr--I~P~fAda 424 (966)
T KOG4626|consen 350 C-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYK-EALR--IKPTFADA 424 (966)
T ss_pred C-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHH-HHHh--cCchHHHH
Confidence 2 3356789999999999999999999999988753 3335678999999999999999999999 5443 4676 468
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCC-HHHHHHHH
Q 010202 381 FNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPN-VQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLD-ITTYTLVI 458 (515)
Q Consensus 381 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~-~~~~~~li 458 (515)
|+.+...|-..|+.+.|++.+.+.+. +.|. ...++.|...|-.+|++.+|+ +-++...+ ++|| +..|..++
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~---~nPt~AeAhsNLasi~kDsGni~~AI-~sY~~aLk---lkPDfpdA~cNll 497 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQ---INPTFAEAHSNLASIYKDSGNIPEAI-QSYRTALK---LKPDFPDAYCNLL 497 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHh---cCcHHHHHHhhHHHHhhccCCcHHHH-HHHHHHHc---cCCCCchhhhHHH
Confidence 99999999999999999999999998 4566 568899999999999999999 88888876 5666 45677777
Q ss_pred HHHHhcCCHHH
Q 010202 459 HGLCRANKCEW 469 (515)
Q Consensus 459 ~~~~~~g~~~~ 469 (515)
.++---.++.+
T Consensus 498 h~lq~vcdw~D 508 (966)
T KOG4626|consen 498 HCLQIVCDWTD 508 (966)
T ss_pred HHHHHHhcccc
Confidence 66654444444
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.7e-18 Score=183.66 Aligned_cols=384 Identities=13% Similarity=0.028 Sum_probs=263.9
Q ss_pred hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCH-----HH---------HHHHHHH
Q 010202 112 DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTL-----NT---------IAKVMRR 177 (515)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~---------~~~li~~ 177 (515)
++.+.|...|+.+... .+.+..++..+...|.+.|++++|+..|++..+.++.+. .. .......
T Consensus 283 g~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~ 360 (1157)
T PRK11447 283 GQGGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDA 360 (1157)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHH
Confidence 6888999999988643 245788999999999999999999999999887665322 11 1223456
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHH
Q 010202 178 FSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQ 257 (515)
Q Consensus 178 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 257 (515)
+.+.|++++|++.|+++.+.. +.+...+..+..++...|++++|++.|+++....+.+...+..+...|. .++.++|.
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~ 438 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKAL 438 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHH
Confidence 778999999999999998863 3467778888999999999999999999966656666767766666654 34556666
Q ss_pred HHHHHHHhCCCC--------ccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010202 258 WTIQEMKGHGCH--------PCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRI 329 (515)
Q Consensus 258 ~~~~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 329 (515)
.+++.+...... .....+..+...+...|++++|++.|++..+.. +-+...+..+...|.+.|++++|...
T Consensus 439 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 439 AFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666544321100 001223444555566666666666666666542 11344555566666666666666666
Q ss_pred HHHHHhcCCCCCHHHHHH--------------------------------------------HHHHHHhcCCHHHHHHHH
Q 010202 330 TEKMKIVGSKPDSRFFNC--------------------------------------------LIYTLGRASRVQEAVYVY 365 (515)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~--------------------------------------------li~~~~~~g~~~~A~~~~ 365 (515)
++++.+.. +.+...+.. +...+...|+.++|..++
T Consensus 518 l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l 596 (1157)
T PRK11447 518 MRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL 596 (1157)
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 66665432 222222222 233444555666666555
Q ss_pred HhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcC
Q 010202 366 QVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKH 445 (515)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 445 (515)
+ . .+.+...+..+...+.+.|++++|++.|++..+.. +.+...+..+...+...|++++|. ..++...+.
T Consensus 597 ~-~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~--P~~~~a~~~la~~~~~~g~~~eA~-~~l~~ll~~- 666 (1157)
T PRK11447 597 R-Q-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE--PGNADARLGLIEVDIAQGDLAAAR-AQLAKLPAT- 666 (1157)
T ss_pred H-h-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHH-HHHHHHhcc-
Confidence 4 2 12345566778888889999999999999998854 445778888889999999999998 888877652
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010202 446 HLSL-DITTYTLVIHGLCRANKCEWAYLLFKEMIGHDI--TP---RYQTCRLILDEVKQKHMYDAAEKIEAVMK 513 (515)
Q Consensus 446 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 513 (515)
.| +...+..+..++...|++++|.++++++....- .| +...+..+...+...|++++|++.++...
T Consensus 667 --~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 667 --ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred --CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33 455667788888899999999999999876321 12 22355556667788999999999988753
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.8e-18 Score=171.87 Aligned_cols=354 Identities=12% Similarity=0.043 Sum_probs=261.1
Q ss_pred hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010202 112 DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTF 191 (515)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 191 (515)
+++..|..++...... .+.+...+..++......|++++|...|+++...+|.+..++..+...+.+.|++++|+..|
T Consensus 56 g~~~~A~~l~~~~l~~--~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l 133 (656)
T PRK15174 56 DETDVGLTLLSDRVLT--AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLA 133 (656)
T ss_pred CCcchhHHHhHHHHHh--CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5677788877776532 23455666667777778999999999999999988888888888889999999999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCcc
Q 010202 192 DELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPC 271 (515)
Q Consensus 192 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 271 (515)
+++.+.. +.+...+..+..++...|++++|...++.+....+.+...+..+. .+...|++++|...++.+.+....++
T Consensus 134 ~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~ 211 (656)
T PRK15174 134 EQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALER 211 (656)
T ss_pred HHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcc
Confidence 9988752 345777888888899999999999999886554455555554443 47788999999999998876643334
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhcCCCCCHHHHHH
Q 010202 272 VISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEE----AIRITEKMKIVGSKPDSRFFNC 347 (515)
Q Consensus 272 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~ 347 (515)
...+..+...+...|++++|++.++++.... +.+...+..+...+...|++++ |...++++.+.. +.+..++..
T Consensus 212 ~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~ 289 (656)
T PRK15174 212 QESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTL 289 (656)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 4455566778888999999999999988764 3356777888888899999885 788888888764 456778888
Q ss_pred HHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHH-hHHHHHHHHHh
Q 010202 348 LIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQ-TFHPLLKSCFK 426 (515)
Q Consensus 348 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~-~~~~ll~~~~~ 426 (515)
+...+.+.|++++|...++ ...... +.+...+..+..++.+.|++++|+..|+++.+.. |+.. .+..+..++..
T Consensus 290 lg~~l~~~g~~~eA~~~l~-~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~---P~~~~~~~~~a~al~~ 364 (656)
T PRK15174 290 YADALIRTGQNEKAIPLLQ-QSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK---GVTSKWNRYAAAALLQ 364 (656)
T ss_pred HHHHHHHCCCHHHHHHHHH-HHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHH
Confidence 8899999999999999998 554432 2245567778888899999999999999988743 5543 34445667888
Q ss_pred cCChHHHHHHHHHHHHHcCCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHH
Q 010202 427 TGKTDECLSQLLDDMVNKHHLSLDITTYT----LVIHGLCRANKCEWAYLLFKEMI 478 (515)
Q Consensus 427 ~g~~~~A~~~~~~~~~~~~~~~p~~~~~~----~li~~~~~~g~~~~A~~~~~~m~ 478 (515)
.|+.++|+ ..+++..+..+-.+ ...|. .+-.++...+..++...+..++.
T Consensus 365 ~G~~deA~-~~l~~al~~~P~~~-~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~ 418 (656)
T PRK15174 365 AGKTSEAE-SVFEHYIQARASHL-PQSFEEGLLALDGQISAVNLPPERLDWAWEVA 418 (656)
T ss_pred CCCHHHHH-HHHHHHHHhChhhc-hhhHHHHHHHHHHHHHhcCCccchhhHHHHHh
Confidence 99999998 88888877433221 22333 33334444455555445556654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-17 Score=173.57 Aligned_cols=396 Identities=9% Similarity=0.026 Sum_probs=281.0
Q ss_pred HHHHHhhhCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 010202 105 KLIHRFKDDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQW 184 (515)
Q Consensus 105 ~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 184 (515)
..|....++...|++++..+.. .-+.+...+..+...+.+.|++++|.++|++....++.+......++..+...|++
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~--~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRV--HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 3344455778888888887752 22456667888999999999999999999998888888888888888888999999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 010202 185 EDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMK 264 (515)
Q Consensus 185 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 264 (515)
++|+..++++.+.. +.+.. +..+..++...|+.++|...++++....|.+...+..+...+...|..++|+..++...
T Consensus 100 ~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~ 177 (765)
T PRK10049 100 DEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDAN 177 (765)
T ss_pred HHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCC
Confidence 99999999988762 44566 87888888899999999999999777777788888888888888888898988887665
Q ss_pred hCCCCccH------hHHHHHHHHHH-----hcCCh---hHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHHHhcCCHH
Q 010202 265 GHGCHPCV------ISYSTIIQSYC-----RQYNF---SKVYELLDEMQAQ-GCPPNVV-TY----TTVMSYLAKSGDFE 324 (515)
Q Consensus 265 ~~~~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~~~~~-~~----~~li~~~~~~g~~~ 324 (515)
. .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+ ...+.++...|+++
T Consensus 178 ~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~ 254 (765)
T PRK10049 178 L---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYK 254 (765)
T ss_pred C---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 4 2221 11122222222 12234 6788888888754 2223221 11 11133455778899
Q ss_pred HHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCC---CHHHHHHHHHHHHhCCCHHHHHHH
Q 010202 325 EAIRITEKMKIVGSK-PDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAP---DTSTFNTMITMFSHHGHHEKAFHV 400 (515)
Q Consensus 325 ~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~ 400 (515)
+|+..|+.+.+.+.+ |+. ....+...|...|++++|...|+ .+....... .......+..++...|++++|.++
T Consensus 255 eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~-~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~ 332 (765)
T PRK10049 255 DVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILT-ELFYHPETIADLSDEELADLFYSLLESENYPGALTV 332 (765)
T ss_pred HHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHH-HHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 999999998876532 322 22225678888999999999998 554432111 134456666778889999999999
Q ss_pred HHHHHhCCC----------CCCCH---HhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCH
Q 010202 401 LEEMNKLEH----------CKPNV---QTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKC 467 (515)
Q Consensus 401 ~~~m~~~~~----------~~p~~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 467 (515)
++++.+..+ ..|+. ..+..+...+...|+.++|+ .+++++.... +.+...+..+...+...|++
T Consensus 333 l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~-~~l~~al~~~--P~n~~l~~~lA~l~~~~g~~ 409 (765)
T PRK10049 333 TAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAE-MRARELAYNA--PGNQGLRIDYASVLQARGWP 409 (765)
T ss_pred HHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhC--CCCHHHHHHHHHHHHhcCCH
Confidence 998877420 11231 23455667788889999998 8888887732 33567788888889999999
Q ss_pred HHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010202 468 EWAYLLFKEMIGHDITPRY-QTCRLILDEVKQKHMYDAAEKIEAVMKK 514 (515)
Q Consensus 468 ~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 514 (515)
++|++.+++..+ +.|+. ..+......+...|++++|+++++.+.+
T Consensus 410 ~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 410 RAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999998886 45664 4444555566888999999999888764
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-16 Score=174.25 Aligned_cols=385 Identities=12% Similarity=0.065 Sum_probs=220.3
Q ss_pred hCHHHHHHHHHHhccCCCCCCCHHHH----------------HHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHH-
Q 010202 112 DDWKSALGIFRWAGSCPGYEHSSEIY----------------EMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKV- 174 (515)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~~~~~~~~~----------------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l- 174 (515)
++.++|.+.++...... +.++... ..+...+.+.|++++|.+.|+.+...++++...-...
T Consensus 76 g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~ 153 (1157)
T PRK11447 76 GDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYW 153 (1157)
T ss_pred CCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHH
Confidence 56677777777665322 2222221 2233456677777777777777766665544321111
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChh----------------
Q 010202 175 MRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAH---------------- 238 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------- 238 (515)
.......|+.++|++.|+++.+.. +.+...+..+...+...|+.++|++.++++....+.+..
T Consensus 154 ~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~ 232 (1157)
T PRK11447 154 RLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSD 232 (1157)
T ss_pred HHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCCh
Confidence 111223467777777777776653 335556666777777777777777777764322111110
Q ss_pred ----hHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010202 239 ----TFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVM 314 (515)
Q Consensus 239 ----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 314 (515)
.+...+..+-.....+.|...+.+.......|+.. .......+...|++++|+..|++..+.. +.+..++..+.
T Consensus 233 ~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg 310 (1157)
T PRK11447 233 ASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALG 310 (1157)
T ss_pred hhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 11111111112222334444444433321122221 1233556778899999999999988763 33678888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHH------------HHHHhcCCHHHHHHHHHhhchhCCCCCCHHHH
Q 010202 315 SYLAKSGDFEEAIRITEKMKIVGSKP-DSRFFNCLI------------YTLGRASRVQEAVYVYQVEMPENGVAPDTSTF 381 (515)
Q Consensus 315 ~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li------------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 381 (515)
..+.+.|++++|+..|++..+..... ....+..++ ..+.+.|++++|...|+ ...... +.+...+
T Consensus 311 ~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~-~Al~~~-P~~~~a~ 388 (1157)
T PRK11447 311 QAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQ-QARQVD-NTDSYAV 388 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHH-HHHHhC-CCCHHHH
Confidence 99999999999999999988754221 223344332 24567899999999998 555442 2356677
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHH-------------------------------------
Q 010202 382 NTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSC------------------------------------- 424 (515)
Q Consensus 382 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~------------------------------------- 424 (515)
..+...+...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 389 ~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~ 466 (1157)
T PRK11447 389 LGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQ 466 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHH
Confidence 788889999999999999999998853 23333443333332
Q ss_pred -----HhcCChHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 010202 425 -----FKTGKTDECLSQLLDDMVNKHHLSL-DITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITP-RYQTCRLILDEVK 497 (515)
Q Consensus 425 -----~~~g~~~~A~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~ 497 (515)
...|++++|+ ..+++..+. .| +...+..+...|.+.|++++|...++++.+ ..| +...+..+...+.
T Consensus 467 ~a~~~~~~g~~~eA~-~~~~~Al~~---~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~--~~P~~~~~~~a~al~l~ 540 (1157)
T PRK11447 467 QAEALENQGKWAQAA-ELQRQRLAL---DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQ--QKPNDPEQVYAYGLYLS 540 (1157)
T ss_pred HHHHHHHCCCHHHHH-HHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHH
Confidence 3345555555 555555542 22 233444555556666666666666666554 222 2222322222334
Q ss_pred hcCCHHHHHHHHHH
Q 010202 498 QKHMYDAAEKIEAV 511 (515)
Q Consensus 498 ~~g~~~~a~~~~~~ 511 (515)
..|++++|...++.
T Consensus 541 ~~~~~~~Al~~l~~ 554 (1157)
T PRK11447 541 GSDRDRAALAHLNT 554 (1157)
T ss_pred hCCCHHHHHHHHHh
Confidence 55666666655554
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.2e-16 Score=156.84 Aligned_cols=367 Identities=10% Similarity=-0.020 Sum_probs=259.7
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 010202 136 IYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCK 215 (515)
Q Consensus 136 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 215 (515)
.+....+.|.+.|++++|+..|++.....+ +...+..+..+|.+.|++++|++.++...+.. +.+...+..+..+|..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p-~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 355677889999999999999999887665 45678888999999999999999999998853 3467788889999999
Q ss_pred cCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC---------------------------CC
Q 010202 216 EGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGH---------------------------GC 268 (515)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------------------------~~ 268 (515)
.|++++|...|..+....+.+......++..+........+...++.-... ..
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 999999998886643221122111111111111100011111111100000 00
Q ss_pred Ccc-HhHHHHHHHH---HHhcCChhHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH
Q 010202 269 HPC-VISYSTIIQS---YCRQYNFSKVYELLDEMQAQG-CPP-NVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDS 342 (515)
Q Consensus 269 ~~~-~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 342 (515)
.+. ...+..+... ....+++++|++.|+...+.+ ..| ....+..+...+...|++++|...+++..+.. +...
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcH
Confidence 000 0001111100 012367899999999998764 233 45677888888889999999999999998763 3446
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHH
Q 010202 343 RFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLK 422 (515)
Q Consensus 343 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~ 422 (515)
..|..+...+...|++++|...|+ ...+.. +.+...|..+...+...|++++|+..|++..+.. +.+...+..+..
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~-~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--P~~~~~~~~la~ 441 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFD-KALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--PDFIFSHIQLGV 441 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHH-HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--ccCHHHHHHHHH
Confidence 688888999999999999999999 554432 2357789999999999999999999999999854 445677788888
Q ss_pred HHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HH-------HHHHHH
Q 010202 423 SCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRY-QT-------CRLILD 494 (515)
Q Consensus 423 ~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~-------~~~ll~ 494 (515)
.+.+.|++++|+ ..+++..+.. +.+...|+.+...+...|++++|.+.|++..+. .|+. .+ +...+.
T Consensus 442 ~~~~~g~~~eA~-~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~ 516 (615)
T TIGR00990 442 TQYKEGSIASSM-ATFRRCKKNF--PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALA 516 (615)
T ss_pred HHHHCCCHHHHH-HHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHH
Confidence 999999999999 9999988732 234678889999999999999999999998863 3321 11 111222
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 010202 495 EVKQKHMYDAAEKIEAVMKK 514 (515)
Q Consensus 495 ~~~~~g~~~~a~~~~~~m~~ 514 (515)
.+...|++++|+++++...+
T Consensus 517 ~~~~~~~~~eA~~~~~kAl~ 536 (615)
T TIGR00990 517 LFQWKQDFIEAENLCEKALI 536 (615)
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 23446999999999987654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.5e-16 Score=162.81 Aligned_cols=414 Identities=12% Similarity=0.058 Sum_probs=298.7
Q ss_pred CChhhHHHHHHHhcCCCCHHHHHHHhhccccCCCCcCCHHHHHHHHHHh--hhCHHHHHHHHHHhccCCCCCCCHHHHHH
Q 010202 62 PRLPDIDVIISKVHVGSSEDEVFQSLKQDHVCNAIQPSHYLVNKLIHRF--KDDWKSALGIFRWAGSCPGYEHSSEIYEM 139 (515)
Q Consensus 62 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~ll~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 139 (515)
+-+..|..+....+....+.+++...... -..+...+..+-..+ .+++..|...++.+... .+.++..+..
T Consensus 16 ~~~~d~~~ia~~~g~~~~A~~~~~~~~~~-----~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~ 88 (765)
T PRK10049 16 NQIADWLQIALWAGQDAEVITVYNRYRVH-----MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRG 88 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 34567888877665555555566665431 123343344443333 36899999999997633 2456778889
Q ss_pred HHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 010202 140 MVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKV 219 (515)
Q Consensus 140 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 219 (515)
++..+.+.|++++|...++++....+.+.. +..+...+...|+.++|+..++++.+.. +.+...+..+..++...+..
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCh
Confidence 999999999999999999999998888888 8888999999999999999999999863 33666667788888889999
Q ss_pred HHHHHHHHHhhcCCCCCh------hhHHHHHHHHH-----ccCCh---hHHHHHHHHHHhC-CCCccHh-HH----HHHH
Q 010202 220 ELARSVFLELKSCIPPNA------HTFNIFIHGWC-----KINRV---DEAQWTIQEMKGH-GCHPCVI-SY----STII 279 (515)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~~~~~-~~~~~~~-~~----~~li 279 (515)
+.|.+.++.+.. .|+. .....++..+. ..+++ ++|+..++.+.+. ...|+.. .+ ...+
T Consensus 167 e~Al~~l~~~~~--~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l 244 (765)
T PRK10049 167 APALGAIDDANL--TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL 244 (765)
T ss_pred HHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 999999987553 2221 12222333332 22234 7788888888754 1123221 11 1113
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhc
Q 010202 280 QSYCRQYNFSKVYELLDEMQAQGCP-PNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKP---DSRFFNCLIYTLGRA 355 (515)
Q Consensus 280 ~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~ 355 (515)
.++...|++++|++.|+.+.+.+.. |+. ....+..+|...|++++|+..++++.+..... .......+..++...
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 4556779999999999999987532 332 22335778999999999999999987653111 134566677788999
Q ss_pred CCHHHHHHHHHhhchhCCC-----------CCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHH
Q 010202 356 SRVQEAVYVYQVEMPENGV-----------APD---TSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLL 421 (515)
Q Consensus 356 g~~~~A~~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll 421 (515)
|++++|..+++ .+..... .|+ ...+..+...+...|+.++|+++++++.... +.+...+..+.
T Consensus 324 g~~~eA~~~l~-~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~--P~n~~l~~~lA 400 (765)
T PRK10049 324 ENYPGALTVTA-HTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA--PGNQGLRIDYA 400 (765)
T ss_pred ccHHHHHHHHH-HHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 99999999998 6654321 123 2345667778889999999999999998864 55577888888
Q ss_pred HHHHhcCChHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010202 422 KSCFKTGKTDECLSQLLDDMVNKHHLSLD-ITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEV 496 (515)
Q Consensus 422 ~~~~~~g~~~~A~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 496 (515)
..+...|++++|+ +.+++..+ ..|+ ...+...+..+.+.|++++|..+++++++ ..|+......+-...
T Consensus 401 ~l~~~~g~~~~A~-~~l~~al~---l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 401 SVLQARGWPRAAE-NELKKAEV---LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLARAR 470 (765)
T ss_pred HHHHhcCCHHHHH-HHHHHHHh---hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 9999999999999 99999887 3454 56677777789999999999999999996 567766555554444
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-14 Score=146.78 Aligned_cols=432 Identities=11% Similarity=0.035 Sum_probs=308.5
Q ss_pred hhHHHHHHHhcCCCCHHH--HHHHhhccccCCCCcCCHH-HHHHHHHHh--hhCHHHHHHHHHHhccCCCCCCCHHHHHH
Q 010202 65 PDIDVIISKVHVGSSEDE--VFQSLKQDHVCNAIQPSHY-LVNKLIHRF--KDDWKSALGIFRWAGSCPGYEHSSEIYEM 139 (515)
Q Consensus 65 ~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~g~~p~~~-~~~~ll~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 139 (515)
..+...|...+.|+...+ .|+... ...|+.. ....++..+ .++..+|+..++.+. ...+........
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL------~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~lla 107 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEES------KAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLAS 107 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH------hhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHH
Confidence 447777777777776644 344443 2345531 111333332 367888999999885 222334455555
Q ss_pred HHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 010202 140 MVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKV 219 (515)
Q Consensus 140 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 219 (515)
+...|...|++++|.++|+++.+.++.+...+..++..+...++.++|++.++++... .|+...+..++..+...++.
T Consensus 108 lA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 108 AARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRN 185 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchH
Confidence 5778999999999999999999999988888888889999999999999999999875 56666665555555556667
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHH------HHHHHHH-----HhcCC-
Q 010202 220 ELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISY------STIIQSY-----CRQYN- 287 (515)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------~~li~~~-----~~~g~- 287 (515)
.+|++.++++....|.+...+..+...+.+.|-...|.++..+-... +.+...-+ ..+++.- ....+
T Consensus 186 ~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~ 264 (822)
T PRK14574 186 YDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERF 264 (822)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 66999999987777888999999999999999999999877764422 11111111 1111110 01122
Q ss_pred --hhHHHHHHHHHHHC-CCCCCH-H----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 010202 288 --FSKVYELLDEMQAQ-GCPPNV-V----TYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQ 359 (515)
Q Consensus 288 --~~~A~~~~~~m~~~-g~~~~~-~----~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 359 (515)
.+.|+.-++.+... +-.|.. . +..-.+-++...|+..++++.++.+...+.+....+-.++.++|...++++
T Consensus 265 ~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 265 DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence 34455556665542 222322 1 222345577889999999999999999887767778899999999999999
Q ss_pred HHHHHHHhhchhCC-----CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC------------CCCCHH-hHHHHH
Q 010202 360 EAVYVYQVEMPENG-----VAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEH------------CKPNVQ-TFHPLL 421 (515)
Q Consensus 360 ~A~~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------------~~p~~~-~~~~ll 421 (515)
+|..+|. .+.... ..++......|.-+|...+++++|..+++++.+..+ ..||-. .+..+.
T Consensus 345 kA~~l~~-~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a 423 (822)
T PRK14574 345 KAAPILS-SLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLV 423 (822)
T ss_pred HHHHHHH-HHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHH
Confidence 9999999 553322 123444467889999999999999999999987321 112222 244556
Q ss_pred HHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcC
Q 010202 422 KSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRY-QTCRLILDEVKQKH 500 (515)
Q Consensus 422 ~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g 500 (515)
..+...|+..+|. +.++++... -+-|......+.+.+...|.+.+|.+.++.... +.|+. .+......+....|
T Consensus 424 ~~~~~~gdl~~Ae-~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~ 498 (822)
T PRK14574 424 QSLVALNDLPTAQ-KKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQ 498 (822)
T ss_pred HHHHHcCCHHHHH-HHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhh
Confidence 7788999999999 999999773 234788889999999999999999999987764 45654 45556666778889
Q ss_pred CHHHHHHHHHHHH
Q 010202 501 MYDAAEKIEAVMK 513 (515)
Q Consensus 501 ~~~~a~~~~~~m~ 513 (515)
+|++|.++.+.+.
T Consensus 499 e~~~A~~~~~~l~ 511 (822)
T PRK14574 499 EWHQMELLTDDVI 511 (822)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999887664
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.6e-14 Score=145.26 Aligned_cols=407 Identities=11% Similarity=0.081 Sum_probs=293.6
Q ss_pred cCCHHHHHHHHHHhhhCHHHHHHHHHHhccCCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHH
Q 010202 97 QPSHYLVNKLIHRFKDDWKSALGIFRWAGSCPGYEHS-SEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVM 175 (515)
Q Consensus 97 ~p~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li 175 (515)
.|+..--..++..-.++...|+..|.++.+.. +.+ +.++ .++..+...|+.++|+..+++.....+.....+..+.
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA 109 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAA 109 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 34444444555555578999999999986322 222 2344 8889999999999999999999866667777777778
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhH
Q 010202 176 RRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDE 255 (515)
Q Consensus 176 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 255 (515)
..|...|++++|+++|+++.+.. +-++..+..++..+...++.++|++.++++....+ +...+-.++..+...++..+
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp-~~~~~l~layL~~~~~~~~~ 187 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDP-TVQNYMTLSYLNRATDRNYD 187 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCc-chHHHHHHHHHHHhcchHHH
Confidence 89999999999999999999864 34677777888899999999999999999766543 44445555555555677767
Q ss_pred HHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH------HHHHHHHH-----HhcCC--
Q 010202 256 AQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVT------YTTVMSYL-----AKSGD-- 322 (515)
Q Consensus 256 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~------~~~li~~~-----~~~g~-- 322 (515)
|++.++++.+.. +-+...+..+..++.+.|-...|+++..+-.+. +.+...- ....+..- ....+
T Consensus 188 AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~ 265 (822)
T PRK14574 188 ALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFD 265 (822)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 999999999875 446777888899999999999999877653321 1211111 11111110 01122
Q ss_pred -HHHHHHHHHHHHhc-CCCCCH-HHH-HH---HHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHH
Q 010202 323 -FEEAIRITEKMKIV-GSKPDS-RFF-NC---LIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHE 395 (515)
Q Consensus 323 -~~~a~~~~~~~~~~-~~~~~~-~~~-~~---li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 395 (515)
.+.|+.-++.+... +..|.. ..| .+ .+-++...|++.+++..|+ .+...+.+....+-..+.++|...++++
T Consensus 266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~-~l~~~~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYE-AMEAEGYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHH-HhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence 34455555555542 222332 222 22 3456778999999999999 9988776655667888999999999999
Q ss_pred HHHHHHHHHHhCCC----CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCC----------CCCC---HHHHHHHH
Q 010202 396 KAFHVLEEMNKLEH----CKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHH----------LSLD---ITTYTLVI 458 (515)
Q Consensus 396 ~A~~~~~~m~~~~~----~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~----------~~p~---~~~~~~li 458 (515)
+|+.+++.+....+ ..++......|.-++...+++++|. .+++.+.+... -.|| ...+..++
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~-~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a 423 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAY-QFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLV 423 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHH-HHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHH
Confidence 99999999966431 1234444578899999999999999 99999987322 0232 22344567
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010202 459 HGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVMK 513 (515)
Q Consensus 459 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 513 (515)
..+...|++.+|++.++++.... +-|......+-..+...|+..+|++.++...
T Consensus 424 ~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~ 477 (822)
T PRK14574 424 QSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVE 477 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 78899999999999999998632 5567777777788899999999999997754
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-13 Score=144.36 Aligned_cols=454 Identities=9% Similarity=0.016 Sum_probs=261.7
Q ss_pred cccccccccccccCCCcc-ccccc---ccCCCCChhhHHHHHHHhcCCCCHHHHHHHhhccccCCCCcCCHHHHHHHH--
Q 010202 34 HIVSSSPIESYCSDGARL-DHHQV---LCVDSPRLPDIDVIISKVHVGSSEDEVFQSLKQDHVCNAIQPSHYLVNKLI-- 107 (515)
Q Consensus 34 ~~~~~~l~~~y~~~~~~~-~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~ll-- 107 (515)
..+...|...|.+.|... +.... ....+.|...+.. ++.++........++++... ..-.++...+.+.+
T Consensus 78 ~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~-La~i~~~~kA~~~ye~l~~~---~P~n~~~~~~la~~~~ 153 (987)
T PRK09782 78 IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERS-LAAIPVEVKSVTTVEELLAQ---QKACDAVPTLRCRSEV 153 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH-HHHhccChhHHHHHHHHHHh---CCCChhHHHHHHHHhh
Confidence 455566777777777543 32222 2233334443333 35554444444567777643 11112222222222
Q ss_pred --HHh-hhCHHHHHHHHHHhccCCCCCCCHHHHHHH-HHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-C
Q 010202 108 --HRF-KDDWKSALGIFRWAGSCPGYEHSSEIYEMM-VDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGA-G 182 (515)
Q Consensus 108 --~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~-g 182 (515)
.+. ....+.|.+.++ . ......|++.+.... .+.|.+.|++++|++++.++.+.++.+......+...|.+. +
T Consensus 154 ~~~~l~y~q~eqAl~AL~-l-r~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~ 231 (987)
T PRK09782 154 GQNALRLAQLPVARAQLN-D-ATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQL 231 (987)
T ss_pred ccchhhhhhHHHHHHHHH-H-hhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhC
Confidence 001 123344555554 2 222223345544444 88888899999999999988888877777666666666663 5
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC--CChhhH--------------------
Q 010202 183 QWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIP--PNAHTF-------------------- 240 (515)
Q Consensus 183 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~-------------------- 240 (515)
+ +++..++.. .++.++.....+...|.+.|+.++|.+++.+++...+ |...+|
T Consensus 232 ~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~ 306 (987)
T PRK09782 232 D-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTV 306 (987)
T ss_pred H-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhh
Confidence 5 666666442 2234666666777777777777777766666432100 111110
Q ss_pred -------------------------------------------------------------------------HHHHHHH
Q 010202 241 -------------------------------------------------------------------------NIFIHGW 247 (515)
Q Consensus 241 -------------------------------------------------------------------------~~li~~~ 247 (515)
.-+.-..
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~ 386 (987)
T PRK09782 307 QFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQL 386 (987)
T ss_pred hhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 0000111
Q ss_pred HccCChhHHHHHHHHHHhC-C-C---------------------------------------------------------
Q 010202 248 CKINRVDEAQWTIQEMKGH-G-C--------------------------------------------------------- 268 (515)
Q Consensus 248 ~~~g~~~~A~~~~~~~~~~-~-~--------------------------------------------------------- 268 (515)
.+.|+.++|.++|+..... + -
T Consensus 387 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (987)
T PRK09782 387 MQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVR 466 (987)
T ss_pred HHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHH
Confidence 2234444455444444321 0 0
Q ss_pred -----Cc--cHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 010202 269 -----HP--CVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPD 341 (515)
Q Consensus 269 -----~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 341 (515)
++ +...|..+..++.. ++.++|+..+.+.... .|+......+...+...|++++|...++++... +|+
T Consensus 467 al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~ 541 (987)
T PRK09782 467 LLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMS 541 (987)
T ss_pred hcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCC
Confidence 11 22233333333333 4555666655555543 344433333344445777888888777776543 344
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHH
Q 010202 342 SRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLL 421 (515)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll 421 (515)
...+..+...+.+.|+.++|...++ ...... +.+...+..+.......|++++|+..+++..+ ..|+...+..+.
T Consensus 542 ~~a~~~la~all~~Gd~~eA~~~l~-qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA 616 (987)
T PRK09782 542 NEDLLAAANTAQAAGNGAARDRWLQ-QAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARA 616 (987)
T ss_pred cHHHHHHHHHHHHCCCHHHHHHHHH-HHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHH
Confidence 4445556667777788888888887 444432 12222333333344455888888888888877 446777788888
Q ss_pred HHHHhcCChHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc
Q 010202 422 KSCFKTGKTDECLSQLLDDMVNKHHLSL-DITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITP-RYQTCRLILDEVKQK 499 (515)
Q Consensus 422 ~~~~~~g~~~~A~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~ 499 (515)
..+.+.|+.++|+ ..+++..+. .| +...+..+..++...|++++|+..+++..+ ..| +...+..+..++...
T Consensus 617 ~~l~~lG~~deA~-~~l~~AL~l---~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~l 690 (987)
T PRK09782 617 TIYRQRHNVPAAV-SDLRAALEL---EPNNSNYQAALGYALWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRL 690 (987)
T ss_pred HHHHHCCCHHHHH-HHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHC
Confidence 8888888888888 888888762 34 456777777888888888888888888876 334 455677777778888
Q ss_pred CCHHHHHHHHHHHHh
Q 010202 500 HMYDAAEKIEAVMKK 514 (515)
Q Consensus 500 g~~~~a~~~~~~m~~ 514 (515)
|++++|+..++...+
T Consensus 691 Gd~~eA~~~l~~Al~ 705 (987)
T PRK09782 691 DDMAATQHYARLVID 705 (987)
T ss_pred CCHHHHHHHHHHHHh
Confidence 888888888887654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.2e-13 Score=121.16 Aligned_cols=421 Identities=15% Similarity=0.185 Sum_probs=287.2
Q ss_pred hhhHHHHHHHhcCCCCHHH--HHHHhhccccCCCCcCCHHHHHHHHHHhh--h--CHH-HHHHHHHHhccCCCCCCCHHH
Q 010202 64 LPDIDVIISKVHVGSSEDE--VFQSLKQDHVCNAIQPSHYLVNKLIHRFK--D--DWK-SALGIFRWAGSCPGYEHSSEI 136 (515)
Q Consensus 64 ~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~g~~p~~~~~~~ll~~~~--~--~~~-~a~~~~~~~~~~~~~~~~~~~ 136 (515)
+++=|.++.-+..+...++ ++++|.+. |+..++..-..++...+ + ++. ...+.|..+ .+.|-. +..+
T Consensus 116 V~~E~nL~kmIS~~EvKDs~ilY~~m~~e----~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~-~~~~E~-S~~s 189 (625)
T KOG4422|consen 116 VETENNLLKMISSREVKDSCILYERMRSE----NVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGM-RNFGED-STSS 189 (625)
T ss_pred hcchhHHHHHHhhcccchhHHHHHHHHhc----CCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhc-cccccc-cccc
Confidence 4455666655555555444 78888876 77777777666666432 1 111 112233333 222221 1122
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 010202 137 YEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKE 216 (515)
Q Consensus 137 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 216 (515)
.|.|.+.+ -+|+. -+.+..++..+|.++++--..+.|.+++++......+.+..+||.+|.+-.-.
T Consensus 190 --------WK~G~vAd--L~~E~----~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~ 255 (625)
T KOG4422|consen 190 --------WKSGAVAD--LLFET----LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS 255 (625)
T ss_pred --------cccccHHH--HHHhh----cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh
Confidence 24454433 33433 34466777778999999999999999999998877788999999998775544
Q ss_pred CCHHHHHHHHHHhh-cCCCCChhhHHHHHHHHHccCChhHH----HHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhH-
Q 010202 217 GKVELARSVFLELK-SCIPPNAHTFNIFIHGWCKINRVDEA----QWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSK- 290 (515)
Q Consensus 217 ~~~~~a~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~- 290 (515)
. ..++..+|. ....||..++|+++.+..+.|+++.| .+++.+|++.|+.|...+|..+|..+++.++..+
T Consensus 256 ~----~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~ 331 (625)
T KOG4422|consen 256 V----GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKV 331 (625)
T ss_pred c----cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhh
Confidence 3 366676644 46889999999999999999987754 5678889999999999999999999998887644
Q ss_pred HHHHHHHHHH----CCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCC---HHHHHHHHHHHHhc
Q 010202 291 VYELLDEMQA----QGCPP----NVVTYTTVMSYLAKSGDFEEAIRITEKMKIVG----SKPD---SRFFNCLIYTLGRA 355 (515)
Q Consensus 291 A~~~~~~m~~----~g~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~ 355 (515)
|..++.+++. ..++| |...|...++.|.+..+.+.|.++..-+.... +.|+ ..-|..+....|..
T Consensus 332 as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~ 411 (625)
T KOG4422|consen 332 ASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQM 411 (625)
T ss_pred hHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHH
Confidence 5555555554 22222 55678888999999999999999887765421 2233 23466777888889
Q ss_pred CCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcC-------
Q 010202 356 SRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTG------- 428 (515)
Q Consensus 356 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g------- 428 (515)
...+.-...|+ .|.-.-.-|+..+...++++..-.|.++-.-++|.+++..| ..-+...-.-++..+++..
T Consensus 412 es~~~~~~~Y~-~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g-ht~r~~l~eeil~~L~~~k~hp~tp~ 489 (625)
T KOG4422|consen 412 ESIDVTLKWYE-DLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG-HTFRSDLREEILMLLARDKLHPLTPE 489 (625)
T ss_pred HHHHHHHHHHH-HhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh-hhhhHHHHHHHHHHHhcCCCCCCChH
Confidence 99999999999 77777777888999999999999999998889998888877 3333333333333333322
Q ss_pred -------------ChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH---HHHHH
Q 010202 429 -------------KTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDI-TPRY---QTCRL 491 (515)
Q Consensus 429 -------------~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~---~~~~~ 491 (515)
++.++.+..-.++.+ ........+++.-.+.|.|+.++|.+++.-+.+.+- .|-. ....-
T Consensus 490 r~Ql~~~~ak~aad~~e~~e~~~~R~r~---~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~E 566 (625)
T KOG4422|consen 490 REQLQVAFAKCAADIKEAYESQPIRQRA---QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAE 566 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHh---ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHH
Confidence 111122111222222 334555678888889999999999999999965432 2333 33445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 010202 492 ILDEVKQKHMYDAAEKIEAVMK 513 (515)
Q Consensus 492 ll~~~~~~g~~~~a~~~~~~m~ 513 (515)
+..+-...++...|...++.|.
T Consensus 567 l~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 567 LMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 6666677888888888887663
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3e-12 Score=134.12 Aligned_cols=348 Identities=11% Similarity=0.055 Sum_probs=257.7
Q ss_pred CCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCC---HHH
Q 010202 147 VRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTF--GLEKNTETMNLLLDTLCKEGK---VEL 221 (515)
Q Consensus 147 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~~~---~~~ 221 (515)
.+...++...++.+-+..+-+......+.-...+.|+.++|.++|...... ...++......++..|.+.+. ..+
T Consensus 355 ~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 355 TRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred cCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 356667777777777766767777766677788899999999999988762 122345555578888887765 333
Q ss_pred HHHH----------------------HHHhh---cCCCC--ChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhH
Q 010202 222 ARSV----------------------FLELK---SCIPP--NAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVIS 274 (515)
Q Consensus 222 a~~~----------------------~~~~~---~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 274 (515)
+..+ +.... ...++ +...|..+..++.. ++.++|...+.+.... .|+...
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~ 511 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQ 511 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHH
Confidence 3222 11111 12345 77888889888887 8899999988887765 366544
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 010202 275 YSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGR 354 (515)
Q Consensus 275 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 354 (515)
...+...+...|++++|+..|+++... .|+...+..+..++.+.|++++|.+.++...+.. +.+...+..+.....+
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~ 588 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYI 588 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHh
Confidence 444455557899999999999997654 4555566777788899999999999999998865 3344444444445556
Q ss_pred cCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHH
Q 010202 355 ASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECL 434 (515)
Q Consensus 355 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 434 (515)
.|++++|...++ ...+. .|+...|..+...+.+.|++++|+..+++..+.. +.+...+..+..++...|+.++|+
T Consensus 589 ~Gr~~eAl~~~~-~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~--Pd~~~a~~nLG~aL~~~G~~eeAi 663 (987)
T PRK09782 589 PGQPELALNDLT-RSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE--PNNSNYQAALGYALWDSGDIAQSR 663 (987)
T ss_pred CCCHHHHHHHHH-HHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 699999999999 55443 4678899999999999999999999999999964 445667778888999999999999
Q ss_pred HHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 010202 435 SQLLDDMVNKHHLSL-DITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRY-QTCRLILDEVKQKHMYDAAEKIEAV 511 (515)
Q Consensus 435 ~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~ 511 (515)
..+++..+. .| +...+..+..++...|++++|...+++..+ +.|+. .+.........+..+++.+.+.++.
T Consensus 664 -~~l~~AL~l---~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r 736 (987)
T PRK09782 664 -EMLERAHKG---LPDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQALITPLTPEQNQQRFNFRRLHEEVGR 736 (987)
T ss_pred -HHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 899998873 34 567888999999999999999999999986 55665 3333444445566667777665554
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-13 Score=135.69 Aligned_cols=395 Identities=10% Similarity=0.049 Sum_probs=255.4
Q ss_pred hCHHHHHHHHHHhccCCCCC-CCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 010202 112 DDWKSALGIFRWAGSCPGYE-HSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVT-LNTIAKVMRRFSGAGQWEDAVR 189 (515)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~ 189 (515)
++...+..+..++....-.. .-...|-.+.++|-..|++++|...|.+....+..+ .-.+..+...|.+.|+.+.+..
T Consensus 284 ~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~ 363 (1018)
T KOG2002|consen 284 KDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKF 363 (1018)
T ss_pred ccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHH
Confidence 57777777777775322111 123457778888888899999998888887765544 4455667888888899999998
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHH-
Q 010202 190 TFDELGTFGLEKNTETMNLLLDTLCKEG----KVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMK- 264 (515)
Q Consensus 190 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~- 264 (515)
.|+...+.. +-+..|...|...|...+ ..+.|..+........+.|...|-.+...+....-+.. +.+|....
T Consensus 364 ~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d 441 (1018)
T KOG2002|consen 364 CFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALD 441 (1018)
T ss_pred HHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHH
Confidence 888887752 446677777777777664 45666666666555567778888877777765554444 66665543
Q ss_pred ---hCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 010202 265 ---GHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQ---GCPPNV------VTYTTVMSYLAKSGDFEEAIRITEK 332 (515)
Q Consensus 265 ---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~ 332 (515)
..+-.+.+...|.+...+...|++.+|...|...... ...+|. .+--.+....-..++.+.|.++|..
T Consensus 442 ~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~ 521 (1018)
T KOG2002|consen 442 ILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKS 521 (1018)
T ss_pred HHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 4454567778888888889999999999988887654 122222 1222233334445566666666666
Q ss_pred HHhcC---------------------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHH
Q 010202 333 MKIVG---------------------------------SKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTS 379 (515)
Q Consensus 333 ~~~~~---------------------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 379 (515)
+.+.. ...++..++.+...+.+...+..|..-|.....+....+|+.
T Consensus 522 Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Y 601 (1018)
T KOG2002|consen 522 ILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAY 601 (1018)
T ss_pred HHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchh
Confidence 55432 022222233333334444444444333321111111123444
Q ss_pred HHHHHHHHHHh------------CCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCC
Q 010202 380 TFNTMITMFSH------------HGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHL 447 (515)
Q Consensus 380 ~~~~li~~~~~------------~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 447 (515)
+.-+|.+.|.+ .+..++|+++|.+..+.. +-|...-+.+.-.++..|++.+|. .+|.+..+. ..
T Consensus 602 sliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d--pkN~yAANGIgiVLA~kg~~~~A~-dIFsqVrEa-~~ 677 (1018)
T KOG2002|consen 602 SLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND--PKNMYAANGIGIVLAEKGRFSEAR-DIFSQVREA-TS 677 (1018)
T ss_pred HHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC--cchhhhccchhhhhhhccCchHHH-HHHHHHHHH-Hh
Confidence 44444444432 134677888888888754 566777778888888899999988 888888773 22
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010202 448 SLDITTYTLVIHGLCRANKCEWAYLLFKEMIGH-DITPRYQTCRLILDEVKQKHMYDAAEKIEAVMK 513 (515)
Q Consensus 448 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 513 (515)
-...+|-.+.++|...|++..|+++|+...+. .-..+..+...|..++.+.|.+.+|.+.+....
T Consensus 678 -~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 678 -DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred -hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 23456888888999999999999999887654 334566777788888888888888887765543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.4e-13 Score=129.15 Aligned_cols=365 Identities=13% Similarity=0.096 Sum_probs=270.8
Q ss_pred HHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 010202 139 MMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGK 218 (515)
Q Consensus 139 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 218 (515)
...+.+...|++++|.+++.++.+.++....+|..|...|-+.|+.++++..+-...... +.|...|..+.....+.|+
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhccc
Confidence 334445555999999999999999999999999999999999999999999887666543 4577899999999999999
Q ss_pred HHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHH----HHHHHHHHhcCChhHHHHH
Q 010202 219 VELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISY----STIIQSYCRQYNFSKVYEL 294 (515)
Q Consensus 219 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~~A~~~ 294 (515)
++.|.-.|.+..+..|++...+---+..|-+.|+...|.+-|.++.....+.|..-. ...+..+...++.+.|++.
T Consensus 223 i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 223 INQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999977677888888888889999999999999999999887422222222 2345667777888999999
Q ss_pred HHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---------------------------CCCHHHHH
Q 010202 295 LDEMQAQ-GCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGS---------------------------KPDSRFFN 346 (515)
Q Consensus 295 ~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---------------------------~~~~~~~~ 346 (515)
++..... +-..+...++.++..+.+...++.|......+..... .++..+.
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~- 381 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI- 381 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-
Confidence 8887762 2234556778888888898889998887777665222 2222221
Q ss_pred HHHHHHHh--cCCHHHHHHHHHhhchhCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHH
Q 010202 347 CLIYTLGR--ASRVQEAVYVYQVEMPENG--VAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLK 422 (515)
Q Consensus 347 ~li~~~~~--~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~ 422 (515)
-++-++.. .+...+++..|. .+.. ..-+...|.-+..+|...|++.+|+.+|..+.... ..-+...|..+..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l---~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~-~~~~~~vw~~~a~ 457 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFL---VEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE-GYQNAFVWYKLAR 457 (895)
T ss_pred hHhhhhhcccccchHHHHHHHH---HHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc-cccchhhhHHHHH
Confidence 12223333 344444444443 3444 33456688899999999999999999999998865 4555678889999
Q ss_pred HHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHH
Q 010202 423 SCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMI--------GHDITPRYQTCRLILD 494 (515)
Q Consensus 423 ~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~~~~p~~~~~~~ll~ 494 (515)
.|...|..++|+ +.++......+. +...--.|...+-+.|+.++|.+.++.+. ..+..|+.........
T Consensus 458 c~~~l~e~e~A~-e~y~kvl~~~p~--~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d 534 (895)
T KOG2076|consen 458 CYMELGEYEEAI-EFYEKVLILAPD--NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCD 534 (895)
T ss_pred HHHHHhhHHHHH-HHHHHHHhcCCC--chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHH
Confidence 999999999999 899988873322 23344567778899999999999999863 1234455555556666
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 010202 495 EVKQKHMYDAAEKIEAVM 512 (515)
Q Consensus 495 ~~~~~g~~~~a~~~~~~m 512 (515)
.+.+.|+.++-+.+...|
T Consensus 535 ~l~~~gk~E~fi~t~~~L 552 (895)
T KOG2076|consen 535 ILFQVGKREEFINTASTL 552 (895)
T ss_pred HHHHhhhHHHHHHHHHHH
Confidence 778888888766655444
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.6e-14 Score=125.92 Aligned_cols=387 Identities=14% Similarity=0.136 Sum_probs=205.9
Q ss_pred HHHHHHHHHHhccCCCCCCCHH-HHHHHHHHHHcCCChHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHH
Q 010202 114 WKSALGIFRWAGSCPGYEHSSE-IYEMMVDILGKVRQMDQMRALLEEMSKGHI-VT----LNTIAKVMRRFSGAGQWEDA 187 (515)
Q Consensus 114 ~~~a~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A 187 (515)
..+|+.-++-+.+. .+-|+.. .--.+.+.+.+..++.+|+++++-....-+ ++ ...++.+...+.+.|.++.|
T Consensus 217 ~~ealntyeiivkn-kmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~da 295 (840)
T KOG2003|consen 217 TAEALNTYEIIVKN-KMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDA 295 (840)
T ss_pred HHHHhhhhhhhhcc-cccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhh
Confidence 34566666555433 2333332 223455677777888888888776554333 12 22344444557778888888
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc-------------CCCCChhhHHHHH-----HHHHc
Q 010202 188 VRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKS-------------CIPPNAHTFNIFI-----HGWCK 249 (515)
Q Consensus 188 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------------~~~~~~~~~~~li-----~~~~~ 249 (515)
+..|+...+. .||..+-..|+-++..-|+-++..+.|..+.. ...|+....+.-| .-.-+
T Consensus 296 insfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek 373 (840)
T KOG2003|consen 296 INSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEK 373 (840)
T ss_pred HhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHH
Confidence 8888877764 57766655566666667787777777777422 1122322222221 11111
Q ss_pred cC--ChhHHHHHHHHHHhCCCCccHhH---H------------------HHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 010202 250 IN--RVDEAQWTIQEMKGHGCHPCVIS---Y------------------STIIQSYCRQYNFSKVYELLDEMQAQGCPPN 306 (515)
Q Consensus 250 ~g--~~~~A~~~~~~~~~~~~~~~~~~---~------------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 306 (515)
.+ +.+++.-.--++..--+.|+-.. | -.-..-+.++|+++.|+++++-+.+..-+.-
T Consensus 374 ~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~ 453 (840)
T KOG2003|consen 374 ENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTA 453 (840)
T ss_pred hhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhh
Confidence 11 11111111111111111222100 0 0011234566777777776665554322211
Q ss_pred HHHHHHH------------------------------------HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 010202 307 VVTYTTV------------------------------------MSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIY 350 (515)
Q Consensus 307 ~~~~~~l------------------------------------i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 350 (515)
...-+.+ .+.....|++++|.+.+++.....-.-....|| +.-
T Consensus 454 saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-igl 532 (840)
T KOG2003|consen 454 SAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGL 532 (840)
T ss_pred HHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcc
Confidence 1111110 011122467777777777776543211122222 233
Q ss_pred HHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCCh
Q 010202 351 TLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKT 430 (515)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~ 430 (515)
.+-..|++++|...|- .+... +..+......+...|....++.+|++++.+.... ++.|+.....|...|-+.|+-
T Consensus 533 t~e~~~~ldeald~f~-klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl--ip~dp~ilskl~dlydqegdk 608 (840)
T KOG2003|consen 533 TAEALGNLDEALDCFL-KLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL--IPNDPAILSKLADLYDQEGDK 608 (840)
T ss_pred cHHHhcCHHHHHHHHH-HHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc--CCCCHHHHHHHHHHhhcccch
Confidence 4556777777777775 33211 1235555666666777777777777777766553 455566677777777777777
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHH
Q 010202 431 DECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEV-KQKHMYDAAEKIE 509 (515)
Q Consensus 431 ~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~g~~~~a~~~~ 509 (515)
.+|. +..-+-.+ -++.+.++..-|..-|....-+++|+.+|++..- +.|+..-|..++..| .+.|++++|.+++
T Consensus 609 sqaf-q~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~y 683 (840)
T KOG2003|consen 609 SQAF-QCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLY 683 (840)
T ss_pred hhhh-hhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 7666 44333322 1333555555566666666667777777776642 567777777777666 5567777777776
Q ss_pred HHHH
Q 010202 510 AVMK 513 (515)
Q Consensus 510 ~~m~ 513 (515)
+.+.
T Consensus 684 k~~h 687 (840)
T KOG2003|consen 684 KDIH 687 (840)
T ss_pred HHHH
Confidence 6653
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.5e-13 Score=127.01 Aligned_cols=290 Identities=11% Similarity=0.028 Sum_probs=134.8
Q ss_pred CCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH--HHHHHHHHcCCHHHHHH
Q 010202 147 VRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMN--LLLDTLCKEGKVELARS 224 (515)
Q Consensus 147 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~--~ll~~~~~~~~~~~a~~ 224 (515)
.|+++.|++.+....+......-.+........+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 466666666665544322111111222233335566666666666666543 33332221 22445555666666666
Q ss_pred HHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 010202 225 VFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCP 304 (515)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 304 (515)
.++.+.+..|.+..+...+...|.+.|++++|.+++..+.+.+..++. ....+-
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~------------------------- 228 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE------------------------- 228 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH-------------------------
Confidence 666655555555666666666666666666666666666554322111 111000
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHH
Q 010202 305 PNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTM 384 (515)
Q Consensus 305 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 384 (515)
..+|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|..+++ ...+. .|+.... +
T Consensus 229 --~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~-~~l~~--~~~~~l~--~ 300 (398)
T PRK10747 229 --QQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIIL-DGLKR--QYDERLV--L 300 (398)
T ss_pred --HHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHH-HHHhc--CCCHHHH--H
Confidence 001222222222222333333444333222 13344444555555555555555555555 32221 2222111 1
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 010202 385 ITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRA 464 (515)
Q Consensus 385 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 464 (515)
+.+....++.+++++..+...+.. +-|...+..+...|.+.|++++|. +.|+...+ ..|+...|..+...+.+.
T Consensus 301 l~~~l~~~~~~~al~~~e~~lk~~--P~~~~l~l~lgrl~~~~~~~~~A~-~~le~al~---~~P~~~~~~~La~~~~~~ 374 (398)
T PRK10747 301 LIPRLKTNNPEQLEKVLRQQIKQH--GDTPLLWSTLGQLLMKHGEWQEAS-LAFRAALK---QRPDAYDYAWLADALDRL 374 (398)
T ss_pred HHhhccCCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHH-HHHHHHHh---cCCCHHHHHHHHHHHHHc
Confidence 222233355555555555555432 223334445555555555555555 55555544 345555555555555555
Q ss_pred CCHHHHHHHHHHHH
Q 010202 465 NKCEWAYLLFKEMI 478 (515)
Q Consensus 465 g~~~~A~~~~~~m~ 478 (515)
|+.++|.+++++-.
T Consensus 375 g~~~~A~~~~~~~l 388 (398)
T PRK10747 375 HKPEEAAAMRRDGL 388 (398)
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555555543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.3e-12 Score=115.20 Aligned_cols=299 Identities=13% Similarity=0.050 Sum_probs=148.3
Q ss_pred CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH--
Q 010202 129 GYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETM-- 206 (515)
Q Consensus 129 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-- 206 (515)
+...|+..+-...-.+-+.|..+.|++.|.+....-|-.|.++..|...... .+.+. .... |.+.|...+
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~---~e~~~----~l~~-~l~~~~h~M~~ 230 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD---IEILS----ILVV-GLPSDMHWMKK 230 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch---HHHHH----HHHh-cCcccchHHHH
Confidence 4455777777777778889999999999999988888888888655443221 11111 1111 111111111
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHh-hcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCC--CccHhHHHHH-----
Q 010202 207 NLLLDTLCKEGKVELARSVFLEL-KSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGC--HPCVISYSTI----- 278 (515)
Q Consensus 207 ~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l----- 278 (515)
-.+..++....+.+++.+-...+ ..|++.+...-+....+.-...++++|+.+|+++.+... --|..+|..+
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~ 310 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh
Confidence 12333444445555555555443 234544444444444455555666666666666655420 0133344433
Q ss_pred --------------------------HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010202 279 --------------------------IQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEK 332 (515)
Q Consensus 279 --------------------------i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 332 (515)
.+-|.-.++.++|+..|+..++.+.. ....|+.+.+-|....+...|.+-++.
T Consensus 311 ~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 311 DKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred hhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 33344444455555555554443211 234444444555555555555555555
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC
Q 010202 333 MKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKP 412 (515)
Q Consensus 333 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 412 (515)
..+.. +.|-..|-.|..+|.-.+...-|.-.|+ ...... +.|...|.+|..+|.+.++.++|++.|.+....| ..
T Consensus 390 Avdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfq-kA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~--dt 464 (559)
T KOG1155|consen 390 AVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQ-KALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG--DT 464 (559)
T ss_pred HHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHH-HHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc--cc
Confidence 54443 3444445555555555555555555554 222211 1234455555555555555555555555554443 22
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010202 413 NVQTFHPLLKSCFKTGKTDECLSQLLDDMV 442 (515)
Q Consensus 413 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 442 (515)
+...+..|.+.+-+.++.++|. ..+++-+
T Consensus 465 e~~~l~~LakLye~l~d~~eAa-~~yek~v 493 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAA-QYYEKYV 493 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHH-HHHHHHH
Confidence 3344455555555555555544 4444433
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.6e-13 Score=128.06 Aligned_cols=292 Identities=11% Similarity=0.015 Sum_probs=131.4
Q ss_pred CCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010202 147 VRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVF 226 (515)
Q Consensus 147 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 226 (515)
.|+++.|.+.+....+..+.....+......+.+.|++++|.+.+.+..+....++..........+...|+++.|...+
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l 176 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGV 176 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45555555555554443333333333334445555555555555555544211111122222344445555555555555
Q ss_pred HHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHH-HHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 010202 227 LELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYS-TIIQSYCRQYNFSKVYELLDEMQAQGCPP 305 (515)
Q Consensus 227 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 305 (515)
+.+.+..|.+..+...+...+.+.|++++|.+.+..+.+.++. +...+. .-..++
T Consensus 177 ~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~----------------------- 232 (409)
T TIGR00540 177 DKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAE----------------------- 232 (409)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH-----------------------
Confidence 5544444445555555555555555555555555555554322 111111 000000
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHH--
Q 010202 306 NVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGS---KPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTST-- 380 (515)
Q Consensus 306 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-- 380 (515)
......+..+.+.+.+..+.+... +.+...+..+...+...|+.++|..+++ ...+. .||...
T Consensus 233 ---------~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~-~~l~~--~pd~~~~~ 300 (409)
T TIGR00540 233 ---------IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIF-DGLKK--LGDDRAIS 300 (409)
T ss_pred ---------HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHH-HHHhh--CCCcccch
Confidence 000111111112222222222110 1244455555555555555555555555 22221 122221
Q ss_pred -HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCH--HhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 010202 381 -FNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNV--QTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLV 457 (515)
Q Consensus 381 -~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~l 457 (515)
...........++.+.+.+.+++..+.. +-|. ....++...|.+.|++++|. +.|+.... ....|+...+..+
T Consensus 301 ~~~l~~~~~l~~~~~~~~~~~~e~~lk~~--p~~~~~~ll~sLg~l~~~~~~~~~A~-~~le~a~a-~~~~p~~~~~~~L 376 (409)
T TIGR00540 301 LPLCLPIPRLKPEDNEKLEKLIEKQAKNV--DDKPKCCINRALGQLLMKHGEFIEAA-DAFKNVAA-CKEQLDANDLAMA 376 (409)
T ss_pred hHHHHHhhhcCCCChHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHHHcccHHHHH-HHHHHhHH-hhcCCCHHHHHHH
Confidence 1111111223355556666666655532 1222 34445666666666666666 66663222 2345666666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 010202 458 IHGLCRANKCEWAYLLFKEMI 478 (515)
Q Consensus 458 i~~~~~~g~~~~A~~~~~~m~ 478 (515)
...+.+.|+.++|.+++++..
T Consensus 377 a~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 666666666666666666643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.3e-13 Score=127.78 Aligned_cols=289 Identities=10% Similarity=0.005 Sum_probs=174.4
Q ss_pred HcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccH--hHHHHHHHHHHhcCChhHHH
Q 010202 215 KEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCV--ISYSTIIQSYCRQYNFSKVY 292 (515)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~ 292 (515)
..|+++.|.+.+.+..+..+.....+-....++.+.|+.+.|.+.+.+..+.. |+. ...-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHH
Confidence 34555555555554332222222333333445555566666666665554432 222 12222345555566666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH-HHHHHH---Hh----cCCHHHHHHH
Q 010202 293 ELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFN-CLIYTL---GR----ASRVQEAVYV 364 (515)
Q Consensus 293 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~---~~----~g~~~~A~~~ 364 (515)
+.++.+.+.. +-+......+...+...|++++|.+.+..+.+.+.. +...+. .-...+ .. ....+.....
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 6666666553 224445555666666666666666666666655432 222221 111111 11 2223333444
Q ss_pred HHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhH---HHHHHHHHhcCChHHHHHHHHHHH
Q 010202 365 YQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTF---HPLLKSCFKTGKTDECLSQLLDDM 441 (515)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~---~~ll~~~~~~g~~~~A~~~~~~~~ 441 (515)
+. ...+. .+.+...+..+...+...|+.++|.+.+++..+.. ||.... ..........++.+.+. +.++..
T Consensus 252 ~~-~~p~~-~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~---pd~~~~~~~~l~~~~~l~~~~~~~~~-~~~e~~ 325 (409)
T TIGR00540 252 WK-NQPRH-RRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL---GDDRAISLPLCLPIPRLKPEDNEKLE-KLIEKQ 325 (409)
T ss_pred HH-HCCHH-HhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC---CCcccchhHHHHHhhhcCCCChHHHH-HHHHHH
Confidence 44 22211 12378889999999999999999999999999854 554421 11222223457777777 888888
Q ss_pred HHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010202 442 VNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVMK 513 (515)
Q Consensus 442 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 513 (515)
.+..+-.|+.....++...+.+.|++++|.+.|+........|+..++..+...+.+.|+.++|.+++++-.
T Consensus 326 lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 326 AKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 775444443356778999999999999999999954433468999999999999999999999999998753
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.8e-12 Score=112.06 Aligned_cols=343 Identities=14% Similarity=0.187 Sum_probs=250.6
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 010202 131 EHSSEIYEMMVDILGKVRQMDQMRALLEEMSK-GHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLL 209 (515)
Q Consensus 131 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 209 (515)
+.+..++..+|.+++|--..+.|.+++++... ++.+..++++.+|.+-. +....+++.+|....+.||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHH
Confidence 45788999999999999999999999999866 45578899988776543 33337889999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHH----HHhhc-CCCCChhhHHHHHHHHHccCChhH-HHHHHHHHHh----CCCCc----cHhHH
Q 010202 210 LDTLCKEGKVELARSVF----LELKS-CIPPNAHTFNIFIHGWCKINRVDE-AQWTIQEMKG----HGCHP----CVISY 275 (515)
Q Consensus 210 l~~~~~~~~~~~a~~~~----~~~~~-~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~----~~~~~----~~~~~ 275 (515)
+.+..+.|+++.|.+.+ .+|+. |+.|...+|..+|..+++.++..+ |..++.++.. +.++| |..-|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 99999999988766544 45554 799999999999999999888754 4455555432 22222 34556
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 010202 276 STIIQSYCRQYNFSKVYELLDEMQAQG----CPPN---VVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCL 348 (515)
Q Consensus 276 ~~li~~~~~~g~~~~A~~~~~~m~~~g----~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 348 (515)
...++.|.+..+.+-|.++..-+.... +.|+ ..-|..+....|+....+.-...|+.|.-.-.-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 778888888888888888765554321 2333 234566777888888999999999999887778888899999
Q ss_pred HHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCC-CH--------H-----HHHHHH-------HHHHhC
Q 010202 349 IYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHG-HH--------E-----KAFHVL-------EEMNKL 407 (515)
Q Consensus 349 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~--------~-----~A~~~~-------~~m~~~ 407 (515)
+.+..-.|.++-.-+++. .+...|..-+...-..++..+++.. .. . -|..++ .+|.+
T Consensus 440 lrA~~v~~~~e~ipRiw~-D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~- 517 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWK-DSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA- 517 (625)
T ss_pred HHHHhhcCcchhHHHHHH-HHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh-
Confidence 999999999999999998 7877775555444444444444433 11 0 111121 22333
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 010202 408 EHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYT---LVIHGLCRANKCEWAYLLFKEMIGHDI 482 (515)
Q Consensus 408 ~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~ 482 (515)
..-.....+.+.-.+.+.|..++|. +++..+.++..--|-....+ -+++.-.+.++...|...++-|...+.
T Consensus 518 --~~~~~t~l~~ia~Ll~R~G~~qkA~-e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 518 --QDWPATSLNCIAILLLRAGRTQKAW-EMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred --ccCChhHHHHHHHHHHHcchHHHHH-HHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 2344556777777789999999999 99998876555444444445 556667778899999999999976543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-15 Score=139.98 Aligned_cols=258 Identities=18% Similarity=0.200 Sum_probs=69.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCh
Q 010202 175 MRRFSGAGQWEDAVRTFDELGTFGL-EKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRV 253 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 253 (515)
...+.+.|++++|++++++...... +.|...|..+...+...++.+.|++.++++....+.+...+..++.. ...+++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 4555555666666666543332221 22333334444444455556666666655433333344445555554 455556
Q ss_pred hHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010202 254 DEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQG-CPPNVVTYTTVMSYLAKSGDFEEAIRITEK 332 (515)
Q Consensus 254 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 332 (515)
++|.++++...+. .++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|.+.+++
T Consensus 94 ~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 94 EEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred ccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666555554433 2344445555555555666666666655544321 233445555555555566666666666666
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC
Q 010202 333 MKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKP 412 (515)
Q Consensus 333 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 412 (515)
..+.. +.|......++..+...|+.+++..++. ...... +.|...|..+..+|...|+.++|+.+|++..+.. +.
T Consensus 172 al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~-~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~--p~ 246 (280)
T PF13429_consen 172 ALELD-PDDPDARNALAWLLIDMGDYDEAREALK-RLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN--PD 246 (280)
T ss_dssp HHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHH-HHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS--TT
T ss_pred HHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHH-HHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc--cc
Confidence 55542 2234455555555555555555555554 322221 2233445555555555566666666666555532 33
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 010202 413 NVQTFHPLLKSCFKTGKTDECLSQLLDDM 441 (515)
Q Consensus 413 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 441 (515)
|+.....+..++...|+.++|. ++.++.
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~-~~~~~~ 274 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEAL-RLRRQA 274 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccc-cccccc
Confidence 4555555555555556655555 444433
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.5e-12 Score=122.03 Aligned_cols=282 Identities=10% Similarity=0.058 Sum_probs=190.6
Q ss_pred cCCHHHHHHHHHHhhcCCCCChhh-HHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHH--HHHHHHHhcCChhHHH
Q 010202 216 EGKVELARSVFLELKSCIPPNAHT-FNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYS--TIIQSYCRQYNFSKVY 292 (515)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~ 292 (515)
.|+++.|++......... +++.. |-.......+.|+++.|...+.++.+. .|+..... .....+...|++++|.
T Consensus 97 eGd~~~A~k~l~~~~~~~-~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA-EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 466666665555432211 12222 222233445667777777777776654 34432222 2245666677777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHH
Q 010202 293 ELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDS-------RFFNCLIYTLGRASRVQEAVYVY 365 (515)
Q Consensus 293 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~ 365 (515)
+.++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 7777776654 224566666667777777777777777777765533222 12233333334445667777777
Q ss_pred HhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcC
Q 010202 366 QVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKH 445 (515)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 445 (515)
+ ..... .+.+......+...+...|+.++|.+.+++..+. +|+.... ++.+....++.++++ +..+...+++
T Consensus 253 ~-~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al-~~~e~~lk~~ 324 (398)
T PRK10747 253 K-NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLE-KVLRQQIKQH 324 (398)
T ss_pred H-hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHH-HHHHHHHhhC
Confidence 7 55432 2457788889999999999999999999999883 4665322 233444669999999 8888888743
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010202 446 HLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVMK 513 (515)
Q Consensus 446 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 513 (515)
+ -|...+.++...+.+.|++++|.+.|+...+ ..|+..++..+...+.+.|+.++|.++++.-.
T Consensus 325 P--~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 325 G--DTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred C--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3 3566788999999999999999999999996 67999999999999999999999999998653
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2e-12 Score=112.14 Aligned_cols=291 Identities=13% Similarity=0.109 Sum_probs=149.2
Q ss_pred CChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010202 148 RQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFL 227 (515)
Q Consensus 148 g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 227 (515)
.+.++|.++|-+|.+.++.+.++..+|.+.|.+.|..+.|+++...+.+. ||...-
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~--------------------- 104 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFE--------------------- 104 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchH---------------------
Confidence 45566666666666666666666666666666666666666666665542 221100
Q ss_pred HhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-
Q 010202 228 ELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPN- 306 (515)
Q Consensus 228 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~- 306 (515)
....+...|..-|...|-+|.|+.+|..+.+.| ..-......|+..|-...+|++|++.-+++.+.+-.+.
T Consensus 105 -------qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~ 176 (389)
T COG2956 105 -------QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYR 176 (389)
T ss_pred -------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccch
Confidence 001112233344455555555555555555432 11233444555555556666666666555555443322
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHH
Q 010202 307 ---VVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNT 383 (515)
Q Consensus 307 ---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 383 (515)
...|.-+...+....+.+.|..++++..+.+ +..+..--.+.+.+...|+++.|.+.++ .+.+.+..--..+...
T Consensus 177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e-~v~eQn~~yl~evl~~ 254 (389)
T COG2956 177 VEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALE-RVLEQNPEYLSEVLEM 254 (389)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHH-HHHHhChHHHHHHHHH
Confidence 1233444444444556666666666665543 3333344444555666666666666666 5555433333445566
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 010202 384 MITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCR 463 (515)
Q Consensus 384 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 463 (515)
+..+|.+.|+.++....+.++.+.. +....-..+-..-....-.+.|...+.+.+.+ +|+...+..+++.-..
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~~---~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r----~Pt~~gf~rl~~~~l~ 327 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMETN---TGADAELMLADLIELQEGIDAAQAYLTRQLRR----KPTMRGFHRLMDYHLA 327 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHcc---CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh----CCcHHHHHHHHHhhhc
Confidence 6666666677766666666666632 33333333333333333334444123333322 4666666666655432
Q ss_pred ---cCCHHHHHHHHHHHHh
Q 010202 464 ---ANKCEWAYLLFKEMIG 479 (515)
Q Consensus 464 ---~g~~~~A~~~~~~m~~ 479 (515)
-|+..+-...++.|..
T Consensus 328 daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 328 DAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred cccccchhhhHHHHHHHHH
Confidence 2345555556666653
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.1e-15 Score=136.71 Aligned_cols=259 Identities=13% Similarity=0.129 Sum_probs=69.6
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCC-CCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 010202 243 FIHGWCKINRVDEAQWTIQEMKGHG-CHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSG 321 (515)
Q Consensus 243 li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 321 (515)
+...+.+.|++++|++++++..... .+.|...|..+.......++++.|++.++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 3444555555555555554332221 1223333444444444455555555555555544322 33344444444 4555
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchh-CCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 010202 322 DFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPE-NGVAPDTSTFNTMITMFSHHGHHEKAFHV 400 (515)
Q Consensus 322 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 400 (515)
++++|.+++....+. .++...+..++..+.+.++++++..+++ .... ...+.+...|..+...+.+.|+.++|++.
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLE-KLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHH-HHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHH-HHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555544332 2334444455555555566666555555 3222 11234455555555566666666666666
Q ss_pred HHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010202 401 LEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGH 480 (515)
Q Consensus 401 ~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 480 (515)
+++..+.. +.|......++..+...|+.+++. +++....+.. +.|+..|..+..++...|+.++|..++++..+.
T Consensus 169 ~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~-~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 169 YRKALELD--PDDPDARNALAWLLIDMGDYDEAR-EALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHH-HHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHH-HHHHHHHHHC--cCHHHHHHHHHHHhccccccccccccccccccc
Confidence 66666532 223445555555666666666544 5555554422 223334555666666666666666666665541
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010202 481 DITPRYQTCRLILDEVKQKHMYDAAEKIEAVM 512 (515)
Q Consensus 481 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 512 (515)
. +.|+.+...+..++...|+.++|.++....
T Consensus 244 ~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 244 N-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp S-TT-HHHHHHHHHHHT---------------
T ss_pred c-cccccccccccccccccccccccccccccc
Confidence 1 224444445555556666666666555443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=7e-11 Score=116.82 Aligned_cols=388 Identities=12% Similarity=0.108 Sum_probs=267.0
Q ss_pred CHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHH
Q 010202 113 DWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGH---IVTLNTIAKVMRRFSGAGQWEDAVR 189 (515)
Q Consensus 113 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 189 (515)
....|++.+..+-... +.+|.+.+.|.+.|.-.|+++.++.+...+.... ..-...+..+.++|-..|++++|..
T Consensus 251 s~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~ 328 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFK 328 (1018)
T ss_pred HHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 3456666666664222 4678899999999999999999999999887644 2445567788999999999999999
Q ss_pred HHHHHhhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccC----ChhHHHHHHHHH
Q 010202 190 TFDELGTFGLEKN--TETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKIN----RVDEAQWTIQEM 263 (515)
Q Consensus 190 ~~~~m~~~g~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~ 263 (515)
.|.+..+. .+| +..+..+...+...|+++.+...|+.+....|.+..+...|...|+..+ ..+.|..++.+.
T Consensus 329 yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~ 406 (1018)
T KOG2002|consen 329 YYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKV 406 (1018)
T ss_pred HHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHH
Confidence 99888765 344 3455678899999999999999999988778888999999999998875 456677777776
Q ss_pred HhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---
Q 010202 264 KGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQ----AQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIV--- 336 (515)
Q Consensus 264 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--- 336 (515)
.+.. +.|...|-.+...+....-+.. +.+|.... ..+-.+.+...|.+...+...|+++.|...|......
T Consensus 407 ~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~ 484 (1018)
T KOG2002|consen 407 LEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLE 484 (1018)
T ss_pred Hhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhh
Confidence 6553 5577888888887766554443 77766543 4555678889999999999999999999999988764
Q ss_pred CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 010202 337 GSKPDS------RFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDT-STFNTMITMFSHHGHHEKAFHVLEEMNKLEH 409 (515)
Q Consensus 337 ~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 409 (515)
...+|. .+--.+...+-..++.+.|.+.|. .+... .|.- ..|-.+.......+...+|..++.+......
T Consensus 485 ~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk-~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~ 561 (1018)
T KOG2002|consen 485 VANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYK-SILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS 561 (1018)
T ss_pred hcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHH-HHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc
Confidence 112332 122223344444556666666666 33322 1221 1222222122223444444444444443221
Q ss_pred ----------------------------------CCCCHHhHHHHHHHHHh------------cCChHHHHHHHHHHHHH
Q 010202 410 ----------------------------------CKPNVQTFHPLLKSCFK------------TGKTDECLSQLLDDMVN 443 (515)
Q Consensus 410 ----------------------------------~~p~~~~~~~ll~~~~~------------~g~~~~A~~~~~~~~~~ 443 (515)
..+|..+...|...|.. .+..++|+ ++|.+..+
T Consensus 562 ~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAl-q~y~kvL~ 640 (1018)
T KOG2002|consen 562 SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKAL-QLYGKVLR 640 (1018)
T ss_pred CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHH-HHHHHHHh
Confidence 23444444444444432 23456677 77777766
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010202 444 KHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVMK 513 (515)
Q Consensus 444 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 513 (515)
. -+.|...-|.+.-.++..|++.+|..+|.+..+.. .-...+|-.+..+|...|+|..|++.|+...
T Consensus 641 ~--dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~l 707 (1018)
T KOG2002|consen 641 N--DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCL 707 (1018)
T ss_pred c--CcchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 12366666778888889999999999999988754 3345578888888899999999999988754
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.8e-12 Score=113.96 Aligned_cols=378 Identities=12% Similarity=0.140 Sum_probs=255.6
Q ss_pred CHHHHHHHHHHhc-cCCCCCCC--HHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010202 113 DWKSALGIFRWAG-SCPGYEHS--SEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVR 189 (515)
Q Consensus 113 ~~~~a~~~~~~~~-~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 189 (515)
.+..|+++++.+. +.+.+..+ ....+.+.-.+.+.|++++|+..|+.+.+..+.-...++ |+-++.--|+-++..+
T Consensus 252 ~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~n-l~i~~f~i~d~ekmke 330 (840)
T KOG2003|consen 252 EFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALN-LIICAFAIGDAEKMKE 330 (840)
T ss_pred hHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhh-hhhhheecCcHHHHHH
Confidence 4678888888775 22333322 345666667788999999999999999887765555554 4556666789999999
Q ss_pred HHHHHhhCCCCCCHH------------HHHHHH-----HHHHHcCC--HHHHHHHHHHhhc-CCCCChhh----------
Q 010202 190 TFDELGTFGLEKNTE------------TMNLLL-----DTLCKEGK--VELARSVFLELKS-CIPPNAHT---------- 239 (515)
Q Consensus 190 ~~~~m~~~g~~~~~~------------~~~~ll-----~~~~~~~~--~~~a~~~~~~~~~-~~~~~~~~---------- 239 (515)
.|.+|......||.. ..+..+ +-.-+.+. .++++-.-..+.. -+.|+-..
T Consensus 331 af~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk 410 (840)
T KOG2003|consen 331 AFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLK 410 (840)
T ss_pred HHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHH
Confidence 999997654333322 222221 11212111 1122111111111 12222110
Q ss_pred ---H--------HHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHH------------------------------
Q 010202 240 ---F--------NIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTI------------------------------ 278 (515)
Q Consensus 240 ---~--------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l------------------------------ 278 (515)
+ -.-..-|.+.|+++.|.+++.-+.+..-+.-...-+.|
T Consensus 411 ~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~ 490 (840)
T KOG2003|consen 411 ASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNA 490 (840)
T ss_pred HhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCH
Confidence 0 11234688899999999888877654211111111111
Q ss_pred ------HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 010202 279 ------IQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTL 352 (515)
Q Consensus 279 ------i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 352 (515)
.+....+|++++|.+.|++.+...-.- ....-.+.-.+-..|++++|++.|-++... +..+..+.-.+...|
T Consensus 491 ~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc-~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiy 568 (840)
T KOG2003|consen 491 AALTNKGNIAFANGDLDKAAEFYKEALNNDASC-TEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIY 568 (840)
T ss_pred HHhhcCCceeeecCcHHHHHHHHHHHHcCchHH-HHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHH
Confidence 011124688999999999988763322 222333344567889999999999887653 245677888888999
Q ss_pred HhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHH
Q 010202 353 GRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDE 432 (515)
Q Consensus 353 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 432 (515)
-...+...|.+++. .... -++.|+.....+...|-+.|+-.+|.++.-+--+- .+-+..+...|...|....-+++
T Consensus 569 e~led~aqaie~~~-q~~s-lip~dp~ilskl~dlydqegdksqafq~~ydsyry--fp~nie~iewl~ayyidtqf~ek 644 (840)
T KOG2003|consen 569 ELLEDPAQAIELLM-QANS-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY--FPCNIETIEWLAAYYIDTQFSEK 644 (840)
T ss_pred HHhhCHHHHHHHHH-Hhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc--cCcchHHHHHHHHHHHhhHHHHH
Confidence 99999999999987 4432 24557889999999999999999999988765552 56678888888888888888999
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 010202 433 CLSQLLDDMVNKHHLSLDITTYTLVIHG-LCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKHMY 502 (515)
Q Consensus 433 A~~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 502 (515)
++ .+|++..- ++|+..-|..||.. +.+.|++++|.++++...+ .++-|......|++.|...|..
T Consensus 645 ai-~y~ekaal---iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 645 AI-NYFEKAAL---IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HH-HHHHHHHh---cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccccch
Confidence 99 99988854 78999999988765 5678999999999999876 5677888888888888776653
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.9e-10 Score=105.71 Aligned_cols=403 Identities=10% Similarity=0.002 Sum_probs=305.7
Q ss_pred cCCCCcCCHHHHHHHHHHhh--hCHHHHHHHHHHhccCCCCC--CCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCC
Q 010202 92 VCNAIQPSHYLVNKLIHRFK--DDWKSALGIFRWAGSCPGYE--HSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVT 167 (515)
Q Consensus 92 ~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 167 (515)
...|+..+...|..=-.+|- +..-.+..+..-.. -.|+. --..+|..-...|.+.+.++-|+.+|....+-.+..
T Consensus 471 ~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avi-gigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k 549 (913)
T KOG0495|consen 471 QANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVI-GIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCK 549 (913)
T ss_pred hhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHH-hhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccch
Confidence 45688888887776666654 23333333333331 11221 124578888889999999999999999988877777
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 010202 168 LNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGW 247 (515)
Q Consensus 168 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 247 (515)
.......+..--..|..++...+|++.... .+.....|......+-..|++..|..++...-...+.+...|-+-+..-
T Consensus 550 ~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle 628 (913)
T KOG0495|consen 550 KSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLE 628 (913)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHh
Confidence 677766666666788899999999998875 2445556666677777889999999999997666777889999999999
Q ss_pred HccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010202 248 CKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAI 327 (515)
Q Consensus 248 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 327 (515)
.....++.|..+|.+.... .|+...|.--+..---.+..++|++++++.++. ++.-...|..+...+-+.++++.|.
T Consensus 629 ~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR 705 (913)
T KOG0495|consen 629 FENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAR 705 (913)
T ss_pred hccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999998875 477778877676666788999999999988876 3323556777778888999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010202 328 RITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKL 407 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 407 (515)
+.|..-.+. ++.....|-.|...=-+.|.+..|..+++ .-.-++ +.+...|...|..-.+.|+.+.|..+..+..+.
T Consensus 706 ~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ild-rarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 706 EAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILD-RARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred HHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHH-HHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888876654 35566778778787788899999999998 554443 347889999999999999999999999998885
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 010202 408 EHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQ 487 (515)
Q Consensus 408 ~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 487 (515)
++-+...|..-|...-+.++-..++ . .+.+ .+-|++....+...+....++++|.++|.+.++.+ +-+-.
T Consensus 783 --cp~sg~LWaEaI~le~~~~rkTks~-D---ALkk---ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD 852 (913)
T KOG0495|consen 783 --CPSSGLLWAEAIWLEPRPQRKTKSI-D---ALKK---CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGD 852 (913)
T ss_pred --CCccchhHHHHHHhccCcccchHHH-H---HHHh---ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-Cccch
Confidence 4556667777777666666644433 2 2322 44577778888889999999999999999998643 33456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 010202 488 TCRLILDEVKQKHMYDAAEKIEAVM 512 (515)
Q Consensus 488 ~~~~ll~~~~~~g~~~~a~~~~~~m 512 (515)
+|.-+..-..++|..++-.++++..
T Consensus 853 ~wa~fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 853 AWAWFYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 7888888889999888888877764
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.5e-11 Score=116.71 Aligned_cols=359 Identities=12% Similarity=0.079 Sum_probs=270.3
Q ss_pred hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010202 112 DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTF 191 (515)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 191 (515)
++.+.|.+++..++++. +.....|..|...|-..|+.+++...+--+...++.++..+..+.....+.|++++|.-.|
T Consensus 153 g~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 68999999999997443 5578899999999999999999999998888888889988888899999999999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCh-h----hHHHHHHHHHccCChhHHHHHHHHHHhC
Q 010202 192 DELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNA-H----TFNIFIHGWCKINRVDEAQWTIQEMKGH 266 (515)
Q Consensus 192 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~----~~~~li~~~~~~g~~~~A~~~~~~~~~~ 266 (515)
.+.++.. +++...+-.-...|-+.|+...|..-|.++-.-.||.. . .-...++.+...++-+.|.+.++.....
T Consensus 231 ~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 9999875 55666666677889999999999999999655444332 2 2233456677778889999988887663
Q ss_pred -CCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---------------------------CHHHHHHHHHHHH
Q 010202 267 -GCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPP---------------------------NVVTYTTVMSYLA 318 (515)
Q Consensus 267 -~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~---------------------------~~~~~~~li~~~~ 318 (515)
+-..+...++.++..+.+...++.|......+......+ +...+ -+.-++.
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~ 388 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLV 388 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhh
Confidence 224456778999999999999999999888877622222 22221 1222334
Q ss_pred hcCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHH
Q 010202 319 KSGDFEEAIRITEKMKIVG--SKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEK 396 (515)
Q Consensus 319 ~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 396 (515)
+....+....+.....+.. ..-+...|.-+.++|...|++.+|..+|. .+......-+...|..+..+|...|.+++
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~-~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLS-PITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHH-HHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 4444455555555555544 34456788899999999999999999999 77665555568899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHH-------cCCCCCCHHHHHHHHHHHHhcCCHHH
Q 010202 397 AFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVN-------KHHLSLDITTYTLVIHGLCRANKCEW 469 (515)
Q Consensus 397 A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-------~~~~~p~~~~~~~li~~~~~~g~~~~ 469 (515)
|.+.|+...... +-+...-..|...+.+.|+.++|+ +.+..+.. ..+..|+...-....+.+...|+.++
T Consensus 468 A~e~y~kvl~~~--p~~~D~Ri~Lasl~~~~g~~Ekal-EtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 468 AIEFYEKVLILA--PDNLDARITLASLYQQLGNHEKAL-ETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHhcC--CCchhhhhhHHHHHHhcCCHHHHH-HHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 999999999854 333445566777788999999999 88887542 12344555555566677888888887
Q ss_pred HHHHHHHHH
Q 010202 470 AYLLFKEMI 478 (515)
Q Consensus 470 A~~~~~~m~ 478 (515)
=+.+...|+
T Consensus 545 fi~t~~~Lv 553 (895)
T KOG2076|consen 545 FINTASTLV 553 (895)
T ss_pred HHHHHHHHH
Confidence 655554443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-11 Score=106.31 Aligned_cols=224 Identities=14% Similarity=0.101 Sum_probs=143.2
Q ss_pred HhhhCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCH
Q 010202 109 RFKDDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTL----NTIAKVMRRFSGAGQW 184 (515)
Q Consensus 109 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~ 184 (515)
-..++++.|.+.|..+.. +-+.+..+.-+|.+.|-..|..|.|+++-..+..+.-.+. -+...|.+-|...|-+
T Consensus 46 LLs~Q~dKAvdlF~e~l~--~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQ--EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred HhhcCcchHHHHHHHHHh--cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 334688899999999963 3344567778899999999999999999998876433332 3455567788888999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc-CCCCC----hhhHHHHHHHHHccCChhHHHHH
Q 010202 185 EDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKS-CIPPN----AHTFNIFIHGWCKINRVDEAQWT 259 (515)
Q Consensus 185 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~----~~~~~~li~~~~~~g~~~~A~~~ 259 (515)
+.|.++|..+.+.| .--......|+..|-...+|++|+.+-+++.+ +..+. ...|.-|...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999998887754 33455666777778777888888777776432 21111 12344455555555666666666
Q ss_pred HHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010202 260 IQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIV 336 (515)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 336 (515)
+.+..+.+ +..+..--.+.+.....|+++.|++.++...+.+..--..+...+..+|.+.|+.++....+..+.+.
T Consensus 203 l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 203 LKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 66655543 12223333444555566666666666666665543333445555556666666666666666655554
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.5e-11 Score=105.29 Aligned_cols=284 Identities=11% Similarity=0.060 Sum_probs=137.4
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-CCCChhhHHHHHHHHHccCChhHHHHH
Q 010202 181 AGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSC-IPPNAHTFNIFIHGWCKINRVDEAQWT 259 (515)
Q Consensus 181 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~ 259 (515)
.|+|.+|++...+-.+.+- .....|..-..+.-..|+.+.+-.++.++.+. ..++..+.-.........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 3444444444444433331 12222333333444444444444444443221 223333344444444444444544444
Q ss_pred HHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 010202 260 IQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNV-------VTYTTVMSYLAKSGDFEEAIRITEK 332 (515)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~ 332 (515)
++++.+.+ +.+.........+|.+.|++.+...++..+.+.|.-.|. .+|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 44444433 223344444445555555555555555555544433222 2455555555444444444444444
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC
Q 010202 333 MKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKP 412 (515)
Q Consensus 333 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 412 (515)
..+. ...++..-.+++.-+.++|+.++|.++.. +..+++..|+. ...-.+.+.++.+.-++..++-.+.- +-
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~-~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h--~~ 326 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIE-DALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQH--PE 326 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHH-HHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhC--CC
Confidence 4332 23444455555566666666666666665 44444443331 11123445555555555555544432 22
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010202 413 NVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMI 478 (515)
Q Consensus 413 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 478 (515)
++..+..|...|.+.+.+.+|. ..|+...+ ..|+..+|+-+.+++.+.|+..+|.+..++..
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~-~~leaAl~---~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKAS-EALEAALK---LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHH-HHHHHHHh---cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 3345556666666666666665 66665544 45666666666666666666666666666654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-10 Score=103.56 Aligned_cols=286 Identities=13% Similarity=0.085 Sum_probs=223.0
Q ss_pred CCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010202 147 VRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVF 226 (515)
Q Consensus 147 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 226 (515)
.|+|..|+++..+-.+......-.+..-+.+--+.|+.+.+-.++.+..+..-.++...+-+..+.....|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 68999999999887776666666666667888888999999999999887533566677777888888999999999988
Q ss_pred HHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccH-------hHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010202 227 LELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCV-------ISYSTIIQSYCRQYNFSKVYELLDEMQ 299 (515)
Q Consensus 227 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~ 299 (515)
+++....+.++.+.....++|.+.|++.+...++.++.+.|.-.|. .+|+.+++-....+..+.-...++...
T Consensus 177 ~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~p 256 (400)
T COG3071 177 DQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQP 256 (400)
T ss_pred HHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcc
Confidence 8877777888899999999999999999999999999998865543 467777776666666565555666554
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHH
Q 010202 300 AQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTS 379 (515)
Q Consensus 300 ~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 379 (515)
.. .+.++..-..++.-+.+.|+.++|.++..+..+.+..|.. ..+ -...+-++.+.-.+..+......+..| .
T Consensus 257 r~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~~~-~~~l~~~d~~~l~k~~e~~l~~h~~~p--~ 329 (400)
T COG3071 257 RK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---CRL-IPRLRPGDPEPLIKAAEKWLKQHPEDP--L 329 (400)
T ss_pred HH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---HHH-HhhcCCCCchHHHHHHHHHHHhCCCCh--h
Confidence 43 3446677778888889999999999999999888766662 112 234566777766666664555554444 6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010202 380 TFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVN 443 (515)
Q Consensus 380 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 443 (515)
.+.++...|.+++.|.+|.+.|+...+ ..|+..+|..+..++.+.|+..+|- +..++...
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~---~~~s~~~~~~la~~~~~~g~~~~A~-~~r~e~L~ 389 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALK---LRPSASDYAELADALDQLGEPEEAE-QVRREALL 389 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh---cCCChhhHHHHHHHHHHcCChHHHH-HHHHHHHH
Confidence 788888999999999999999998887 5699999999999999999999987 77776653
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.2e-12 Score=119.02 Aligned_cols=282 Identities=15% Similarity=0.110 Sum_probs=201.1
Q ss_pred ChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010202 149 QMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFG--LEKNTETMNLLLDTLCKEGKVELARSVF 226 (515)
Q Consensus 149 ~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 226 (515)
+.++|...|..++.....+.-....+.++|...+++++|.++|+.+.+.. ...+.+.|.+.+--+-+ +-++..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 45788888888776666555556667888888888888888888887642 11266777776643321 2234444
Q ss_pred HH-hhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 010202 227 LE-LKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPP 305 (515)
Q Consensus 227 ~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 305 (515)
.+ +....+..+.+|.++..+|.-.++.+.|++.|++..+.. +....+|+.+..-+....++|.|...|+..+.....
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r- 487 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR- 487 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-
Confidence 43 445566778889999999998899999999998888764 226778888888888888899998888887654211
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHH
Q 010202 306 NVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMI 385 (515)
Q Consensus 306 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 385 (515)
+-.+|-.+.-.|.+.++++.|+-.|+++.+.+ +.+.+....+...+-+.|+.++|+.+++ ....... .|+..--..+
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~-~A~~ld~-kn~l~~~~~~ 564 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYE-KAIHLDP-KNPLCKYHRA 564 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHH-HHHhcCC-CCchhHHHHH
Confidence 23344455677888889999988888888765 5566667777788888889999999888 4333222 2444444455
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010202 386 TMFSHHGHHEKAFHVLEEMNKLEHCKPN-VQTFHPLLKSCFKTGKTDECLSQLLDDMVN 443 (515)
Q Consensus 386 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 443 (515)
..+...+++++|+..++++++ +.|+ ...|..+...|.+.|+.+.|+ .-|.-+.+
T Consensus 565 ~il~~~~~~~eal~~LEeLk~---~vP~es~v~~llgki~k~~~~~~~Al-~~f~~A~~ 619 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKE---LVPQESSVFALLGKIYKRLGNTDLAL-LHFSWALD 619 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHH---hCcchHHHHHHHHHHHHHHccchHHH-HhhHHHhc
Confidence 666777889999999999888 4455 456777778888889988888 66666654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.3e-12 Score=118.61 Aligned_cols=277 Identities=14% Similarity=0.141 Sum_probs=179.2
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---CCCChhhHHHHHHHHHccCChhHHHHH
Q 010202 183 QWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSC---IPPNAHTFNIFIHGWCKINRVDEAQWT 259 (515)
Q Consensus 183 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~ 259 (515)
+..+|+..|..+.+. +.-.......+.++|.+.+++++|+++|+.+++. ...+..+|.+.+-.+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 456777888775443 2333455666777888888888888888876553 234556666655443321 11222
Q ss_pred H-HHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010202 260 I-QEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPP-NVVTYTTVMSYLAKSGDFEEAIRITEKMKIVG 337 (515)
Q Consensus 260 ~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 337 (515)
+ +.+.+.. +-.+.+|.++.++|.-+++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+..+.
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-- 483 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-- 483 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--
Confidence 2 2222221 335677888888888888888888888877765 33 567777777777777788888888877763
Q ss_pred CCCCHHHHH---HHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCH
Q 010202 338 SKPDSRFFN---CLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNV 414 (515)
Q Consensus 338 ~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~ 414 (515)
.|+..|| .+...|.+.++++.|+-.|+ ...+-+. .+.+....+...+-+.|+.++|+++++++.... +-|+
T Consensus 484 --~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fq-kA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld--~kn~ 557 (638)
T KOG1126|consen 484 --VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQ-KAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD--PKNP 557 (638)
T ss_pred --CCchhhHHHHhhhhheeccchhhHHHHHHH-hhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC--CCCc
Confidence 3444444 44566778888888888887 4443322 245556666667777788888888888877754 2333
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010202 415 QTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSL-DITTYTLVIHGLCRANKCEWAYLLFKEMIG 479 (515)
Q Consensus 415 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 479 (515)
..--.-...+...+++++|+ ..++++.+ +.| +...|..+...|.+.|+.+.|+.-|.-+.+
T Consensus 558 l~~~~~~~il~~~~~~~eal-~~LEeLk~---~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEAL-QELEELKE---LVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred hhHHHHHHHHHhhcchHHHH-HHHHHHHH---hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 33334445566777888887 77777766 344 355666777778888888888877777764
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.3e-11 Score=119.74 Aligned_cols=270 Identities=8% Similarity=0.032 Sum_probs=167.0
Q ss_pred cCCCCCHHHHHHHHHHHH-----hcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHH---------cCCHHHHHHHH
Q 010202 162 KGHIVTLNTIAKVMRRFS-----GAGQWEDAVRTFDELGTFGLEK-NTETMNLLLDTLCK---------EGKVELARSVF 226 (515)
Q Consensus 162 ~~~~~~~~~~~~li~~~~-----~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ll~~~~~---------~~~~~~a~~~~ 226 (515)
...+.+++++...+++.. ..+.+++|++.|++..+. .| +...|..+..++.. .+++++|...+
T Consensus 250 ~~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~ 327 (553)
T PRK12370 250 ISELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHA 327 (553)
T ss_pred cCCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHH
Confidence 444555555444444431 124577888888887764 34 34455555444332 23467888888
Q ss_pred HHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 010202 227 LELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPN 306 (515)
Q Consensus 227 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 306 (515)
++.....|.+..++..+...+...|++++|...|++..+.+ +.+...|..+...+...|++++|+..+++..+.... +
T Consensus 328 ~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~ 405 (553)
T PRK12370 328 IKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-R 405 (553)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-C
Confidence 87666667777788888888888888888888888887764 334566777777888888888888888887776322 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCC-HHHHHHHH
Q 010202 307 VVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPD-TSTFNTMI 385 (515)
Q Consensus 307 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~li 385 (515)
...+..++..+...|++++|...++++.+...+.+...+..+...|...|+.++|...+. .+... .|+ ....+.+.
T Consensus 406 ~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~-~~~~~--~~~~~~~~~~l~ 482 (553)
T PRK12370 406 AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTK-EISTQ--EITGLIAVNLLY 482 (553)
T ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHH-Hhhhc--cchhHHHHHHHH
Confidence 223333444566678888888888887665323345556667777778888888888887 54332 233 33445555
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHc
Q 010202 386 TMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNK 444 (515)
Q Consensus 386 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 444 (515)
..|...| ++|...++.+.+.....|....+ +-..+.-.|+.+.+ .+|+++.+.
T Consensus 483 ~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~--~~~~~~~~~ 535 (553)
T PRK12370 483 AEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAE--KMWNKFKNE 535 (553)
T ss_pred HHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHH--HHHHHhhcc
Confidence 5666666 46766666665532123332233 33334555666664 445776663
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.8e-08 Score=93.08 Aligned_cols=383 Identities=10% Similarity=0.042 Sum_probs=213.2
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHhcCCHHHHH
Q 010202 114 WKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSK----GHI-VTLNTIAKVMRRFSGAGQWEDAV 188 (515)
Q Consensus 114 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~ 188 (515)
.+.|..++..+. ..++.++.+|-+-...=-..|+.+...++.++-.. .++ .+......=...+-..|..--+.
T Consensus 422 YenAkkvLNkaR--e~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQ 499 (913)
T KOG0495|consen 422 YENAKKVLNKAR--EIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQ 499 (913)
T ss_pred HHHHHHHHHHHH--hhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHH
Confidence 445666777664 33456677776666666667777777666655321 221 23333333333344444444444
Q ss_pred HHHHHHhhCCCC------------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 010202 189 RTFDELGTFGLE------------------------------------KNTETMNLLLDTLCKEGKVELARSVFLELKSC 232 (515)
Q Consensus 189 ~~~~~m~~~g~~------------------------------------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 232 (515)
.+....+..|+. -+...|......--..|..+....++++....
T Consensus 500 AIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~ 579 (913)
T KOG0495|consen 500 AIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ 579 (913)
T ss_pred HHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 444444333332 23333443333333445555555555554444
Q ss_pred CCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 010202 233 IPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTT 312 (515)
Q Consensus 233 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 312 (515)
.|.....|-....-+-..|++..|..++.+..+.. +-+...|-+.+..-..+.++++|..+|.+.... .|+...|.-
T Consensus 580 ~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mK 656 (913)
T KOG0495|consen 580 CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMK 656 (913)
T ss_pred CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHH
Confidence 45555555555555555666666666666665543 224455666666666666666666666665543 445555554
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCC
Q 010202 313 VMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHG 392 (515)
Q Consensus 313 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 392 (515)
-+..---.++.++|.+++++.++.- +.-...|-.+...+-+.++++.|...|..-... ++.....|..+...=-+.|
T Consensus 657 s~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLakleEk~~ 733 (913)
T KOG0495|consen 657 SANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAKLEEKDG 733 (913)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHHHHHHhc
Confidence 4444445566666666666666541 222345555556666666666666666522211 2223445555555555666
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010202 393 HHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYL 472 (515)
Q Consensus 393 ~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 472 (515)
.+-+|..+|++..-.+ +-+...|...+..=.+.|+.+.|. .+..+..++ ++.+...|..-|....+.++-..+..
T Consensus 734 ~~~rAR~ildrarlkN--Pk~~~lwle~Ir~ElR~gn~~~a~-~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~D 808 (913)
T KOG0495|consen 734 QLVRARSILDRARLKN--PKNALLWLESIRMELRAGNKEQAE-LLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSID 808 (913)
T ss_pred chhhHHHHHHHHHhcC--CCcchhHHHHHHHHHHcCCHHHHH-HHHHHHHHh--CCccchhHHHHHHhccCcccchHHHH
Confidence 6667777777666554 445556666666666777777665 555555543 33345566666666666666555444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010202 473 LFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVMKK 514 (515)
Q Consensus 473 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 514 (515)
.+++ ..-|+.+...+...+.....++.|.+.|....+
T Consensus 809 ALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk 845 (913)
T KOG0495|consen 809 ALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK 845 (913)
T ss_pred HHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4443 345666666677777778888888888876543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.5e-10 Score=100.95 Aligned_cols=312 Identities=12% Similarity=0.077 Sum_probs=213.4
Q ss_pred HHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHHc
Q 010202 140 MVDILGKVRQMDQMRALLEEMSKGHIVTLNTIA-KVMRRFSGAGQWEDAVRTFDELGTFGL--EKNTETMNLLLDTLCKE 216 (515)
Q Consensus 140 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~ 216 (515)
+..+|....+.+++..-.+.....+.+...-+. ....+.-...++++|+.+|+++.+... --|..+|..++- .+.
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~ 310 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHh
Confidence 446666666777777777777666554433332 234455567788888888888887621 116677777763 333
Q ss_pred CCHHHHHHHHHH-hhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHH
Q 010202 217 GKVELARSVFLE-LKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELL 295 (515)
Q Consensus 217 ~~~~~a~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 295 (515)
.+-.. ..+.+ ...-.+-.+.|...+.+-|+-.++.++|...|++..+.+ +.....|+.+..-|....+...|++-+
T Consensus 311 ~~skL--s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 311 DKSKL--SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred hhHHH--HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 32221 12222 111223445667778888888888888999998888775 335677888888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCC
Q 010202 296 DEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVA 375 (515)
Q Consensus 296 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 375 (515)
+...+-. +.|-..|-.+.++|.-.+...-|+-.|++..+.. +.|...|.+|..+|.+.++.++|.+.|. .....|-
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCyk-rai~~~d- 463 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYK-RAILLGD- 463 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHH-HHHhccc-
Confidence 8888763 4477888888888888888888888888888764 6778888889999988999999998888 5444432
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh----CCCCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCC
Q 010202 376 PDTSTFNTMITMFSHHGHHEKAFHVLEEMNK----LEHCKP-NVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLD 450 (515)
Q Consensus 376 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~ 450 (515)
.+...+..+...|-+.++.++|...|.+-++ .|.+.| ....-.-|..-+.+.+++++|- .+...... + .+.
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As-~Ya~~~~~--~-~~e 539 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEAS-YYATLVLK--G-ETE 539 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHH-HHHHHHhc--C-Cch
Confidence 3557788888888888888888888877655 332223 2223333455667888888876 55555543 3 555
Q ss_pred HHHHHHHHHHHHhc
Q 010202 451 ITTYTLVIHGLCRA 464 (515)
Q Consensus 451 ~~~~~~li~~~~~~ 464 (515)
..--..|++.+.+.
T Consensus 540 ~eeak~LlReir~~ 553 (559)
T KOG1155|consen 540 CEEAKALLREIRKI 553 (559)
T ss_pred HHHHHHHHHHHHHh
Confidence 55566666665554
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-10 Score=103.73 Aligned_cols=200 Identities=15% Similarity=0.098 Sum_probs=131.4
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 010202 133 SSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDT 212 (515)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 212 (515)
....+..+...|.+.|++++|.+.|++....++.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 356677777788888888888888888777666666777777777777888888888887777653 3355566667777
Q ss_pred HHHcCCHHHHHHHHHHhhcC--CCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhH
Q 010202 213 LCKEGKVELARSVFLELKSC--IPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSK 290 (515)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 290 (515)
+...|++++|.+.+++.... .+.....+..+...+...|++++|...+++..... +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 77777777777777774321 22334455566666677777777777777666543 2234556666666666777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010202 291 VYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKI 335 (515)
Q Consensus 291 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 335 (515)
|.+.+++.... .+.+...+..+...+...|+.++|..+.+.+.+
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77776666654 233445555555666666666666666655543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.4e-08 Score=91.50 Aligned_cols=387 Identities=14% Similarity=0.112 Sum_probs=214.6
Q ss_pred CHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010202 113 DWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFD 192 (515)
Q Consensus 113 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 192 (515)
+...|..+|+.+.. +-..+...|---+++=.++.++..|+.+++.....-|-........+..--..|++.-|.++|+
T Consensus 88 e~~RARSv~ERALd--vd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqife 165 (677)
T KOG1915|consen 88 EIQRARSVFERALD--VDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFE 165 (677)
T ss_pred HHHHHHHHHHHHHh--cccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 55677888887752 2244667777788888888888888888888766444222222222334445688888888888
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC-CC-Cc
Q 010202 193 ELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGH-GC-HP 270 (515)
Q Consensus 193 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~-~~ 270 (515)
+..+ ..|+...|++.++.=.+.+.++.|..+|++..- ..|++..|--....=.++|....|..+|+...+. |- ..
T Consensus 166 rW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~-~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~ 242 (677)
T KOG1915|consen 166 RWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL-VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEE 242 (677)
T ss_pred HHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe-ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH
Confidence 8777 478888888888888888888888888888332 2388888887777777888888888888776543 10 00
Q ss_pred cHhHHHHHHHHHHhcCChhHHHHHHHHHHHC------------------------C-------------------CCCCH
Q 010202 271 CVISYSTIIQSYCRQYNFSKVYELLDEMQAQ------------------------G-------------------CPPNV 307 (515)
Q Consensus 271 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------------------g-------------------~~~~~ 307 (515)
+...+.+....=.++..++.|.-+|+-.++. | -+-|-
T Consensus 243 ~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nY 322 (677)
T KOG1915|consen 243 AEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNY 322 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCc
Confidence 1112222222222233333333333222211 0 11233
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHH--------HHhcCCHHHHHHHHHhhchhCCCCCC
Q 010202 308 VTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDS--RFFNCLIYT--------LGRASRVQEAVYVYQVEMPENGVAPD 377 (515)
Q Consensus 308 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~ 377 (515)
.+|--.+..-...|+.+...++|+..+..- +|-. ..|...|-. =....+.+.+.++|+ ...+ -++..
T Consensus 323 DsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq-~~l~-lIPHk 399 (677)
T KOG1915|consen 323 DSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ-ACLD-LIPHK 399 (677)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHh-hcCcc
Confidence 445555555566778888888888777652 3321 112111111 123456666666665 3333 12222
Q ss_pred HHHHHHHHHH----HHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHH
Q 010202 378 TSTFNTMITM----FSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITT 453 (515)
Q Consensus 378 ~~~~~~li~~----~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~ 453 (515)
..||.-+--. -.++.+...|.+++...+- .-|-..+|...|..=.+.+++|.+. .++++..+ .+ +-|..+
T Consensus 400 kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG---~cPK~KlFk~YIelElqL~efDRcR-kLYEkfle-~~-Pe~c~~ 473 (677)
T KOG1915|consen 400 KFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG---KCPKDKLFKGYIELELQLREFDRCR-KLYEKFLE-FS-PENCYA 473 (677)
T ss_pred cchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc---cCCchhHHHHHHHHHHHHhhHHHHH-HHHHHHHh-cC-hHhhHH
Confidence 3333333222 2344555666666655543 3455566666665555666666655 56665555 22 113445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010202 454 YTLVIHGLCRANKCEWAYLLFKEMIGHD-ITPRYQTCRLILDEVKQKHMYDAAEKIEAVMK 513 (515)
Q Consensus 454 ~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 513 (515)
|......-...|+.+.|..+|+-.++.+ +......|.+.+.-=...|.++.|..+++.+.
T Consensus 474 W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL 534 (677)
T KOG1915|consen 474 WSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLL 534 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHH
Confidence 5555555555566666666665555422 11122233333333345555566655555543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.1e-09 Score=97.68 Aligned_cols=373 Identities=11% Similarity=0.036 Sum_probs=211.8
Q ss_pred CHHHHHHHHHHhccCCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010202 113 DWKSALGIFRWAGSCPGYEHS-SEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTF 191 (515)
Q Consensus 113 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 191 (515)
..+.|++.+.|++. ..|| +..|+.....|...|+|++..+.-....+-++.-..++..-.+++-+.|++++|+.=.
T Consensus 130 kY~eAIkyY~~AI~---l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~ 206 (606)
T KOG0547|consen 130 KYDEAIKYYTQAIE---LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDV 206 (606)
T ss_pred cHHHHHHHHHHHHh---cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhh
Confidence 56788888888863 3455 7778888888888888888888877777777776777766677777777777765422
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--------H-hhc-C--CCCChhhHHHHHHHHHc----------
Q 010202 192 DELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFL--------E-LKS-C--IPPNAHTFNIFIHGWCK---------- 249 (515)
Q Consensus 192 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--------~-~~~-~--~~~~~~~~~~li~~~~~---------- 249 (515)
.-. .++..+....-...+.+++. + ++. + .-|+....++....+..
T Consensus 207 tv~-------------ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 207 TVL-------------CILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred hHH-------------HHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence 211 11111111111111111111 1 111 1 11222222222221110
Q ss_pred ---------------cC---ChhHHHHHHHHHHhC---CCCcc---------HhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010202 250 ---------------IN---RVDEAQWTIQEMKGH---GCHPC---------VISYSTIIQSYCRQYNFSKVYELLDEMQ 299 (515)
Q Consensus 250 ---------------~g---~~~~A~~~~~~~~~~---~~~~~---------~~~~~~li~~~~~~g~~~~A~~~~~~m~ 299 (515)
.+ .+..|...+.+-... ....+ ..+...-...+.-.|+...|.+-|+...
T Consensus 274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I 353 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAI 353 (606)
T ss_pred ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence 00 122222222111100 00001 1111222222344677777777777777
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCC-CH
Q 010202 300 AQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAP-DT 378 (515)
Q Consensus 300 ~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~ 378 (515)
.....++ ..|--+..+|....+.++..+.|++..+.+ +.++.+|..-..++.-.+++++|..-|+ ..... .| +.
T Consensus 354 ~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~-Kai~L--~pe~~ 428 (606)
T KOG0547|consen 354 KLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQ-KAISL--DPENA 428 (606)
T ss_pred hcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHH-HHhhc--Chhhh
Confidence 6543322 226666677778888888888888877765 4455666666666777778888888887 44332 23 34
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCC------CCCHH
Q 010202 379 STFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHL------SLDIT 452 (515)
Q Consensus 379 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~------~p~~~ 452 (515)
..|-.+..+..+.+++++++..|++.++. .+--+..|+.....+...++++.|. +.++..++-... .+.+.
T Consensus 429 ~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~-k~YD~ai~LE~~~~~~~v~~~pl 505 (606)
T KOG0547|consen 429 YAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAV-KQYDKAIELEPREHLIIVNAAPL 505 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHH-HHHHHHHhhccccccccccchhh
Confidence 45555555666777888888888888774 3444667777778888888888888 777777662111 11111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010202 453 TYTLVIHGLCRANKCEWAYLLFKEMIGHDITPR-YQTCRLILDEVKQKHMYDAAEKIEAVM 512 (515)
Q Consensus 453 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m 512 (515)
.-..++..-.+ +++..|.+++++..+ +.|. ...+.+|...-.+.|+.++|+++|++-
T Consensus 506 V~Ka~l~~qwk-~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 506 VHKALLVLQWK-EDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred hhhhHhhhchh-hhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 11222222223 778888888888875 3343 346677777777888888888888764
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.6e-10 Score=111.41 Aligned_cols=248 Identities=9% Similarity=0.042 Sum_probs=133.8
Q ss_pred HHHHHHHHHHhhcCCCCChhhHHHHHHHHHc---------cCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChh
Q 010202 219 VELARSVFLELKSCIPPNAHTFNIFIHGWCK---------INRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFS 289 (515)
Q Consensus 219 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 289 (515)
.++|...|++..+..|.+...|..+..++.. .+++++|...+++..+.. +-+...|..+...+...|+++
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHH
Confidence 5566677766554445555566555544432 233567777777766654 335556666666666777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 010202 290 KVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEM 369 (515)
Q Consensus 290 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 369 (515)
+|+..|++..+.+ +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++ ..
T Consensus 356 ~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~-~~ 432 (553)
T PRK12370 356 VGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGD-EL 432 (553)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHH-HH
Confidence 7777777766653 2245556666666777777777777777776653 1122222233334455667777777766 43
Q ss_pred hhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhH-HHHHHHHHhcCChHHHHHHHHHHHHHcCCCC
Q 010202 370 PENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTF-HPLLKSCFKTGKTDECLSQLLDDMVNKHHLS 448 (515)
Q Consensus 370 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~-~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 448 (515)
.....+-+...+..+..++...|+.++|...+.++... .|+..+. +.+...+...|+ +|. ..++.+.+.....
T Consensus 433 l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~--~a~-~~l~~ll~~~~~~ 506 (553)
T PRK12370 433 RSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---EITGLIAVNLLYAEYCQNSE--RAL-PTIREFLESEQRI 506 (553)
T ss_pred HHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---cchhHHHHHHHHHHHhccHH--HHH-HHHHHHHHHhhHh
Confidence 33211113344555666666677777777777665542 3443332 333334455553 444 4455554433333
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010202 449 LDITTYTLVIHGLCRANKCEWAYLLFKEMIG 479 (515)
Q Consensus 449 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 479 (515)
+....+.. ..+.-.|+.+.+..+ +++.+
T Consensus 507 ~~~~~~~~--~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 507 DNNPGLLP--LVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred hcCchHHH--HHHHHHhhhHHHHHH-HHhhc
Confidence 33222322 233444555555555 55544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.6e-10 Score=100.38 Aligned_cols=94 Identities=15% Similarity=0.129 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc
Q 010202 170 TIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCK 249 (515)
Q Consensus 170 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 249 (515)
.+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++.....+.+...+..+...+..
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 111 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ 111 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 33344444444455555555444444321 12233344444444444444444444444322223333344444444444
Q ss_pred cCChhHHHHHHHHHH
Q 010202 250 INRVDEAQWTIQEMK 264 (515)
Q Consensus 250 ~g~~~~A~~~~~~~~ 264 (515)
.|++++|...+++..
T Consensus 112 ~g~~~~A~~~~~~~~ 126 (234)
T TIGR02521 112 QGKYEQAMQQFEQAI 126 (234)
T ss_pred cccHHHHHHHHHHHH
Confidence 444444444444443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.1e-10 Score=98.82 Aligned_cols=234 Identities=11% Similarity=0.018 Sum_probs=179.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 010202 167 TLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHG 246 (515)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 246 (515)
+|-=-..+.++|.+.|.+.+|.+.|+.-.+. .|-+.||..|-++|.+..+...|+.++.+-.+.+|-|+....-+.+.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARI 299 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHH
Confidence 4444455688999999999999999887774 67777888888999999999999999988777778888877888888
Q ss_pred HHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010202 247 WCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEA 326 (515)
Q Consensus 247 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 326 (515)
+-..++.++|.++++...+.. +.++.....+...|.-.++++-|+.+|+.+.+.|+. +...|+.+.-+|.-.+++|-+
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhh
Confidence 888899999999998887753 345556666677777888899999999999988876 777888888888888888888
Q ss_pred HHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 010202 327 IRITEKMKIVGSKPD--SRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEM 404 (515)
Q Consensus 327 ~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 404 (515)
+.-|.+....--.|+ ..+|-.+.......|++..|.+.|+ .....+ ..+...+|.+.-.-.+.|++++|..++...
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfr-laL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFR-LALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHH-HHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 888888776433333 3456666666667788888888887 433322 224567777777777888888888888877
Q ss_pred Hh
Q 010202 405 NK 406 (515)
Q Consensus 405 ~~ 406 (515)
..
T Consensus 456 ~s 457 (478)
T KOG1129|consen 456 KS 457 (478)
T ss_pred hh
Confidence 66
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-10 Score=113.60 Aligned_cols=251 Identities=15% Similarity=0.236 Sum_probs=148.6
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc-CCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 010202 189 RTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKS-CIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHG 267 (515)
Q Consensus 189 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 267 (515)
.++..+...|+.|+..||..++.-||..|+++.|- +|.-|+. ..+.+..+++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 35667788899999999999999999999999988 8888764 47888899999999999999988876
Q ss_pred CCccHhHHHHHHHHHHhcCChhHHHHHHHH-HHH-------CCCCCCHHHHHH--------------HHHHHHhcCCHHH
Q 010202 268 CHPCVISYSTIIQSYCRQYNFSKVYELLDE-MQA-------QGCPPNVVTYTT--------------VMSYLAKSGDFEE 325 (515)
Q Consensus 268 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~-------~g~~~~~~~~~~--------------li~~~~~~g~~~~ 325 (515)
.|...||+.|..+|...||... ++..++ |.. .|+.....-+-. .+.-..-.|-++.
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 5788999999999999999764 222222 221 222211111111 1111122233333
Q ss_pred HHHHHHHHHhcCC-CCCHHHHHHHHHHHHhc-CCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 010202 326 AIRITEKMKIVGS-KPDSRFFNCLIYTLGRA-SRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEE 403 (515)
Q Consensus 326 a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 403 (515)
+.+++..+..... .|... ++.-.... ..+++-..... ...+ .|++.+|.+++.+-.-.|+.+.|..++.+
T Consensus 158 llkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~ck-sl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~e 229 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCK-SLVE---APTSETLHAVLKRALAAGDVDGAKNLLYE 229 (1088)
T ss_pred HHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHH-Hhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 3333333221110 01111 12221111 11222222222 1111 36666666666666666777777777777
Q ss_pred HHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 010202 404 MNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANK 466 (515)
Q Consensus 404 m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 466 (515)
|.+.| .+.+..-|..|+-+ .++..-+. .+++.|.+ .|+.|+..|+...+-.+..+|.
T Consensus 230 mke~g-fpir~HyFwpLl~g---~~~~q~~e-~vlrgmqe-~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 230 MKEKG-FPIRAHYFWPLLLG---INAAQVFE-FVLRGMQE-KGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHcC-CCcccccchhhhhc---CccchHHH-HHHHHHHH-hcCCCCcchhHHHHHhhhcchh
Confidence 76666 66666555555544 45555444 55555555 6667776666666655555444
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.4e-09 Score=100.52 Aligned_cols=297 Identities=16% Similarity=0.147 Sum_probs=173.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 010202 137 YEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKE 216 (515)
Q Consensus 137 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 216 (515)
.-....++...|++++|++.+++....-+.....+......+.+.|+.++|..+|..+.+.+ +.|..-|..+..+....
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhh
Confidence 33445566777888888888876554444445555666777888888888888888887764 33444444444444222
Q ss_pred -----CCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChh-HHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhH
Q 010202 217 -----GKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVD-EAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSK 290 (515)
Q Consensus 217 -----~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 290 (515)
.+.+...++|+++....|..... ..+.-.+.....+. .+...+..+..+|+|+ +|+.+-..|....+.+-
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~yp~s~~~-~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEKYPRSDAP-RRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAI 161 (517)
T ss_pred cccccccHHHHHHHHHHHHHhCccccch-hHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHH
Confidence 24566677777766555332222 22222222222232 3445556666677543 35555555554444444
Q ss_pred HHHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 010202 291 VYELLDEMQAQ----G----------CPPNV--VTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGR 354 (515)
Q Consensus 291 A~~~~~~m~~~----g----------~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 354 (515)
..+++...... + -.|+. .++..+...|...|++++|++++++.++.. +..+..|..-...|-+
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh 240 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH
Confidence 44555544321 1 12333 234455666777888888888888877763 3336677777777888
Q ss_pred cCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHh--------HHHHHHHHHh
Q 010202 355 ASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQT--------FHPLLKSCFK 426 (515)
Q Consensus 355 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~--------~~~ll~~~~~ 426 (515)
.|++++|...++ ....... -|-..-+-.+..+.+.|+.++|.+++....+.+ ..|-... ..-...+|.+
T Consensus 241 ~G~~~~Aa~~~~-~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~-~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 241 AGDLKEAAEAMD-EARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTRED-VDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred CCCHHHHHHHHH-HHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC-CCcccCHHHHHHHHHHHHHHHHHHH
Confidence 888888888877 5544322 244555556667778888888888888777655 3332211 1333456777
Q ss_pred cCChHHHHHHHHHHHHH
Q 010202 427 TGKTDECLSQLLDDMVN 443 (515)
Q Consensus 427 ~g~~~~A~~~~~~~~~~ 443 (515)
.|++..|+ +.|..+.+
T Consensus 318 ~~~~~~AL-k~~~~v~k 333 (517)
T PF12569_consen 318 QGDYGLAL-KRFHAVLK 333 (517)
T ss_pred HhhHHHHH-HHHHHHHH
Confidence 88887777 55544433
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.4e-12 Score=81.96 Aligned_cols=49 Identities=33% Similarity=0.713 Sum_probs=28.6
Q ss_pred ccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010202 270 PCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLA 318 (515)
Q Consensus 270 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 318 (515)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.6e-09 Score=98.31 Aligned_cols=287 Identities=10% Similarity=0.008 Sum_probs=143.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHH
Q 010202 200 EKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTII 279 (515)
Q Consensus 200 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 279 (515)
..++.....-.+-+...+++.+..++++.+-+..|+....+..-|.++.+.|+..+-..+=.++.+.- |-...+|-++.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg 319 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG 319 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence 34444455555555555566666666655555555555555555555555665555555555555442 33445555555
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 010202 280 QSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQ 359 (515)
Q Consensus 280 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 359 (515)
--|...|+..+|.+.|.+....+-. =...|-.....|+-.|..++|+..+...-+.- +-...-+--+.--|.+.++.+
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHH
Confidence 5555556666666666554432111 12345555555555566666655555544421 000001111222345555566
Q ss_pred HHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCCCC-CHHhHHHHHHHHHhcCChHHHH
Q 010202 360 EAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKL----EHCKP-NVQTFHPLLKSCFKTGKTDECL 434 (515)
Q Consensus 360 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~p-~~~~~~~ll~~~~~~g~~~~A~ 434 (515)
-|.+.|. ..... .+.|+...+-+.....+.+.+.+|..+|+..... +.-.+ -..+++.|..+|.+.+.+++|+
T Consensus 398 LAe~Ff~-~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 398 LAEKFFK-QALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHH-HHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 6666655 22111 1223444555544444555566666665555421 00011 2234555555666666666666
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010202 435 SQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEV 496 (515)
Q Consensus 435 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 496 (515)
..+++.... .+.+..++.++.-.|...|+++.|.+.|.+.+ .+.|+..+...+++.+
T Consensus 476 -~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 476 -DYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLA 532 (611)
T ss_pred -HHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHH
Confidence 555555542 12345555555555666666666666666655 3556655555555544
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.4e-09 Score=98.44 Aligned_cols=279 Identities=11% Similarity=0.051 Sum_probs=128.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc
Q 010202 170 TIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCK 249 (515)
Q Consensus 170 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 249 (515)
.+.....-+...+++.+..++++...+.. +++...+..-|..+...|+..+-..+=.++.+..|....+|-++.--|.-
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHH
Confidence 33333444445555555555555554432 33444444444455555554444444344444455555555555555555
Q ss_pred cCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010202 250 INRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRI 329 (515)
Q Consensus 250 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 329 (515)
.|+.++|.+.|.+..... +.=...|-.....|.-.|..|+|+..+...-+.= +-..--+--+.--|.+.++++.|.+.
T Consensus 325 i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~F 402 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKF 402 (611)
T ss_pred hcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHH
Confidence 555555555555544321 1112345555555555555555555554443320 00000111122334445555555555
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchh---CC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 010202 330 TEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPE---NG--VAPDTSTFNTMITMFSHHGHHEKAFHVLEEM 404 (515)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 404 (515)
|.+..... +.|+.+.+-+.-.....+.+.+|..+|+..... .+ ......+++.|..+|.+.+.+++|+..+++.
T Consensus 403 f~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 403 FKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA 481 (611)
T ss_pred HHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 55554432 344444444444444455555555555422100 00 0012234555555555555555555555555
Q ss_pred HhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 010202 405 NKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVI 458 (515)
Q Consensus 405 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li 458 (515)
.... +.+..++.++.-.+...|+++.|+ +.|.+... +.|+-.+-..++
T Consensus 482 L~l~--~k~~~~~asig~iy~llgnld~Ai-d~fhKaL~---l~p~n~~~~~lL 529 (611)
T KOG1173|consen 482 LLLS--PKDASTHASIGYIYHLLGNLDKAI-DHFHKALA---LKPDNIFISELL 529 (611)
T ss_pred HHcC--CCchhHHHHHHHHHHHhcChHHHH-HHHHHHHh---cCCccHHHHHHH
Confidence 5542 344455555555555555555555 55555433 344443333333
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.4e-08 Score=91.51 Aligned_cols=286 Identities=13% Similarity=0.042 Sum_probs=202.1
Q ss_pred HHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010202 115 KSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDEL 194 (515)
Q Consensus 115 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 194 (515)
..+...+-.+.....++.|+.....+.+.+...|+.++|+..|++....++-+...+....-.+.+.|+.++...+...+
T Consensus 213 s~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~L 292 (564)
T KOG1174|consen 213 SDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYL 292 (564)
T ss_pred chhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHH
Confidence 33444444444456677888888999999999999999999999888888776666665566777888888888777776
Q ss_pred hhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhH
Q 010202 195 GTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVIS 274 (515)
Q Consensus 195 ~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 274 (515)
.... +.....|-.-+......++++.|+.+-++.....+.+...+-.-...+...|+.++|.-.|+...... +-+...
T Consensus 293 f~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~ 370 (564)
T KOG1174|consen 293 FAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEI 370 (564)
T ss_pred Hhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHH
Confidence 5532 23334444444455566778888877777444445566666666677788899999988888877653 346788
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHH
Q 010202 275 YSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVM-SYLA-KSGDFEEAIRITEKMKIVGSKPD-SRFFNCLIYT 351 (515)
Q Consensus 275 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li-~~~~-~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~ 351 (515)
|.-|+..|...|++.+|.-+-+...+. ++-+..+.+.+. ..|. ....-++|.++++...+. .|+ ....+.+...
T Consensus 371 Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL 447 (564)
T KOG1174|consen 371 YRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAEL 447 (564)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHH
Confidence 999999999999988887776654432 233445554442 2222 222347788888877664 444 4456677788
Q ss_pred HHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 010202 352 LGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLE 408 (515)
Q Consensus 352 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 408 (515)
+...|..+++..++++.+.. .||....+.+.+.+...+.+++|++.|....+.+
T Consensus 448 ~~~Eg~~~D~i~LLe~~L~~---~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 448 CQVEGPTKDIIKLLEKHLII---FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHhhCccchHHHHHHHHHhh---ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 88889999999998844443 5888888889888888899999999998888743
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-07 Score=86.30 Aligned_cols=363 Identities=10% Similarity=0.053 Sum_probs=246.8
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHH
Q 010202 135 EIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTE-TMNLLLDTL 213 (515)
Q Consensus 135 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~ll~~~ 213 (515)
..|---..-=...+++..|+++|+.....+..+......-+..-.++..+..|..++++.... .|.+. .|--.+.+=
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHH
Confidence 333333333445678899999999998876655555555588888999999999999999874 45332 333445555
Q ss_pred HHcCCHHHHHHHHHH-hhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHH
Q 010202 214 CKEGKVELARSVFLE-LKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVY 292 (515)
Q Consensus 214 ~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 292 (515)
-..|++..|.++|++ |. ..|+...|++.|+.=.+-+.++.|..++++..-. .|++.+|--....=.++|....|.
T Consensus 152 E~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHH
Confidence 667999999999998 54 4699999999999999999999999999998865 599999988888888899999999
Q ss_pred HHHHHHHHC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---------------------------------
Q 010202 293 ELLDEMQAQ-GC-PPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVG--------------------------------- 337 (515)
Q Consensus 293 ~~~~~m~~~-g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--------------------------------- 337 (515)
.+|....+. |- ..+...+.+....=.+...++.|.-+|+..+..-
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 999887653 11 0112223333222223444555555554443321
Q ss_pred ----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCH--HHHHHHHH--------HHHhCCCHHHH
Q 010202 338 ----------SKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDT--STFNTMIT--------MFSHHGHHEKA 397 (515)
Q Consensus 338 ----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~li~--------~~~~~g~~~~A 397 (515)
-+.|-.+|--.+..-...|+.+...++|+..+.. ++|-. ..|...|- .=....+.+.+
T Consensus 308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan--vpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN--VPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc--CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 1233444555555555667777777777733322 33311 11211111 11235677777
Q ss_pred HHHHHHHHhCCCCCCCHHhHHHHHHHHH----hcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010202 398 FHVLEEMNKLEHCKPNVQTFHPLLKSCF----KTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLL 473 (515)
Q Consensus 398 ~~~~~~m~~~~~~~p~~~~~~~ll~~~~----~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 473 (515)
.++++...+. ++....||..+--.|+ +.-++..|. +++...+ |.-|...+|...|..-.+.+.++....+
T Consensus 386 r~vyq~~l~l--IPHkkFtFaKiWlmyA~feIRq~~l~~AR-kiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 386 RQVYQACLDL--IPHKKFTFAKIWLMYAQFEIRQLNLTGAR-KILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred HHHHHHHHhh--cCcccchHHHHHHHHHHHHHHHcccHHHH-HHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHH
Confidence 7777777763 4555666655544433 566777777 7777664 5678888999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010202 474 FKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVM 512 (515)
Q Consensus 474 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 512 (515)
+++.++-+ +-|..+|.-....=...|+++.|..+|+..
T Consensus 460 YEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelA 497 (677)
T KOG1915|consen 460 YEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELA 497 (677)
T ss_pred HHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99998743 335567766665557789999999998865
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-08 Score=99.39 Aligned_cols=129 Identities=18% Similarity=0.128 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 010202 380 TFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPN-VQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVI 458 (515)
Q Consensus 380 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li 458 (515)
++..+...|...|++++|++++++.++. .|+ +..|..-...+-+.|++++|. +.++.... ... -|...-+-.+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~~~Aa-~~~~~Ar~-LD~-~DRyiNsK~a 269 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDLKEAA-EAMDEARE-LDL-ADRYINSKCA 269 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCHHHHH-HHHHHHHh-CCh-hhHHHHHHHH
Confidence 3355566777888888888888888884 355 556777777788888888888 77777765 221 1454555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHH--HHHHHHhcCCHHHHHHHHHHHHh
Q 010202 459 HGLCRANKCEWAYLLFKEMIGHDITPRY------QTCRL--ILDEVKQKHMYDAAEKIEAVMKK 514 (515)
Q Consensus 459 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~--ll~~~~~~g~~~~a~~~~~~m~~ 514 (515)
..+.++|++++|.+++....+.+..|-. ..|.. ...+|.+.|++..|.+-|..+.+
T Consensus 270 Ky~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 270 KYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 7778888888888888877665543322 12322 23467778888888887776643
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-11 Score=80.03 Aligned_cols=50 Identities=36% Similarity=0.575 Sum_probs=43.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010202 449 LDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQ 498 (515)
Q Consensus 449 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 498 (515)
||..+|+++|++|++.|++++|.++|++|.+.|+.||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78888999999999999999999999999888889999999988888764
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.1e-09 Score=105.39 Aligned_cols=333 Identities=15% Similarity=0.163 Sum_probs=185.6
Q ss_pred CCcCCHHHHHHHHHHhh--hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHH
Q 010202 95 AIQPSHYLVNKLIHRFK--DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIA 172 (515)
Q Consensus 95 g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 172 (515)
|+.|+.+||.++|..++ ++.+.|- +|..|. ....+.+..+++.++......++.+.+. .+..++|.
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~-~ksLpv~e~vf~~lv~sh~~And~Enpk----------ep~aDtyt 87 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFME-IKSLPVREGVFRGLVASHKEANDAENPK----------EPLADTYT 87 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhh-cccccccchhHHHHHhcccccccccCCC----------CCchhHHH
Confidence 66666666666666655 2444333 565553 3334445556666666666655554443 44555566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh--cCCCCChhhHHHHHHHHHcc
Q 010202 173 KVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELK--SCIPPNAHTFNIFIHGWCKI 250 (515)
Q Consensus 173 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~li~~~~~~ 250 (515)
.|..+|.+.|+... |+...+ -...+...+...|.-.....++..+. .+.-||.. ..+....-.
T Consensus 88 ~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~e 152 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLE 152 (1088)
T ss_pred HHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHH
Confidence 66666666666544 222211 12223334444444433333333321 12233332 233344445
Q ss_pred CChhHHHHHHHHHHhCC-CCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010202 251 NRVDEAQWTIQEMKGHG-CHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRI 329 (515)
Q Consensus 251 g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 329 (515)
|-++.+.+++..+.... ..|..+ .++-+... +....++........-.|+..+|..++......|+.+.|..+
T Consensus 153 glwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~l 226 (1088)
T KOG4318|consen 153 GLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNL 226 (1088)
T ss_pred HHHHHHHHHHhhCCcccccchHHH----HHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHH
Confidence 66666666665554321 011111 13332222 233334433333221158999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 010202 330 TEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEH 409 (515)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 409 (515)
+.+|++.|++.+.+-|..|+-+ .++..-+..++. .|.+.|+.|+..|+..-+..+..+|.... .+.|
T Consensus 227 l~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlr-gmqe~gv~p~seT~adyvip~l~N~~t~~--------~~e~- 293 (1088)
T KOG4318|consen 227 LYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLR-GMQEKGVQPGSETQADYVIPQLSNGQTKY--------GEEG- 293 (1088)
T ss_pred HHHHHHcCCCcccccchhhhhc---CccchHHHHHHH-HHHHhcCCCCcchhHHHHHhhhcchhhhh--------cccc-
Confidence 9999999999999988888766 788888899998 99999999999999988888777554211 1222
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHHH---------HHHc--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010202 410 CKPNVQTFHPLLKSCFKTGKTDECLSQLLDD---------MVNK--HHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMI 478 (515)
Q Consensus 410 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~---------~~~~--~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 478 (515)
.|....+.+-+.+-+-.|. .|. +.++. ..+. .|+......|...+ -+..+|+-++...+-..|.
T Consensus 294 -sq~~hg~tAavrsaa~rg~--~a~-k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~hQgk~e~veqlvg~l~ 368 (1088)
T KOG4318|consen 294 -SQLAHGFTAAVRSAACRGL--LAN-KRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLRHQGKGEEVEQLVGQLL 368 (1088)
T ss_pred -cchhhhhhHHHHHHHhccc--HhH-HHHHHHHHHHHHHHhhHHHHhccccchHHHHHHH-HHHHcCCCchHHHHHhhhc
Confidence 3444444433333333331 112 11111 1110 13333334454333 3344788888888887774
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.4e-09 Score=93.36 Aligned_cols=238 Identities=10% Similarity=0.036 Sum_probs=185.0
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHH
Q 010202 236 NAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVT-YTTVM 314 (515)
Q Consensus 236 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~~~li 314 (515)
|..--+.+.++|.+.|-+.+|.+.|+...+. .|-+.||-.|-..|.+..++..|+.++.+-.+. .|-.+| ...+.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~A 297 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQA 297 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhH
Confidence 3334467888999999999999999887765 467778888999999999999999999887765 344444 44566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCH
Q 010202 315 SYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHH 394 (515)
Q Consensus 315 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 394 (515)
..+-..++.++|.++++...+.. +.++.....+...|.-.++++-|...|+ .+..-|.. +...|+.+.-+|...+++
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYR-RiLqmG~~-speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYR-RILQMGAQ-SPELFCNIGLCCLYAQQI 374 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHH-HHHHhcCC-ChHHHhhHHHHHHhhcch
Confidence 77778889999999999988764 5566666677777888899999999998 88887775 778888888888889999
Q ss_pred HHHHHHHHHHHhCCCCCCC--HHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010202 395 EKAFHVLEEMNKLEHCKPN--VQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYL 472 (515)
Q Consensus 395 ~~A~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 472 (515)
+-++..|.+....- ..|+ ...|-.+.......|++.-|. +.|+-... .. .-+...++.|.-.-.+.|++++|..
T Consensus 375 D~~L~sf~RAlsta-t~~~~aaDvWYNlg~vaV~iGD~nlA~-rcfrlaL~-~d-~~h~ealnNLavL~~r~G~i~~Ars 450 (478)
T KOG1129|consen 375 DLVLPSFQRALSTA-TQPGQAADVWYNLGFVAVTIGDFNLAK-RCFRLALT-SD-AQHGEALNNLAVLAARSGDILGARS 450 (478)
T ss_pred hhhHHHHHHHHhhc-cCcchhhhhhhccceeEEeccchHHHH-HHHHHHhc-cC-cchHHHHHhHHHHHhhcCchHHHHH
Confidence 99999998887754 3454 345777777777888988887 78877765 22 2346788888888889999999999
Q ss_pred HHHHHHhCCCCCCH
Q 010202 473 LFKEMIGHDITPRY 486 (515)
Q Consensus 473 ~~~~m~~~~~~p~~ 486 (515)
++....+ +.|+.
T Consensus 451 ll~~A~s--~~P~m 462 (478)
T KOG1129|consen 451 LLNAAKS--VMPDM 462 (478)
T ss_pred HHHHhhh--hCccc
Confidence 9988874 45553
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.4e-07 Score=85.96 Aligned_cols=221 Identities=13% Similarity=0.115 Sum_probs=126.8
Q ss_pred CChhHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcC
Q 010202 286 YNFSKVYELLDEMQAQGCPPN------VVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPD---SRFFNCLIYTLGRAS 356 (515)
Q Consensus 286 g~~~~A~~~~~~m~~~g~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g 356 (515)
|+..+-...|.+..+. +.|. ...|..+...|-..|+++.|..+|++..+...+.- ..+|..-..+=.+..
T Consensus 361 ~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~ 439 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE 439 (835)
T ss_pred CChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh
Confidence 4444555555555442 2221 23456666777777888888888887776543322 345555555666677
Q ss_pred CHHHHHHHHHhhchhCC----------CCC-------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHH
Q 010202 357 RVQEAVYVYQVEMPENG----------VAP-------DTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHP 419 (515)
Q Consensus 357 ~~~~A~~~~~~~~~~~~----------~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ 419 (515)
+++.|.++.+ ....-. ..| +...|...++.--..|-++....+++++.+..-..|- ....
T Consensus 440 ~~~~Al~lm~-~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPq--ii~N 516 (835)
T KOG2047|consen 440 NFEAALKLMR-RATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQ--IIIN 516 (835)
T ss_pred hHHHHHHHHH-hhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHH--HHHH
Confidence 7777777776 221110 001 2234555555555567777777777777775522232 2222
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-
Q 010202 420 LLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRA---NKCEWAYLLFKEMIGHDITPRYQTCRLILDE- 495 (515)
Q Consensus 420 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~- 495 (515)
...-+-...-++++. +++++-+.-+..+.-...|+..+.-+.+. -..+.|..+|++.++ |.+|...-+--|+-+
T Consensus 517 yAmfLEeh~yfeesF-k~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~ 594 (835)
T KOG2047|consen 517 YAMFLEEHKYFEESF-KAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAK 594 (835)
T ss_pred HHHHHHhhHHHHHHH-HHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Confidence 222233455566776 66665555333222345777766655542 468999999999998 777765433333333
Q ss_pred H-HhcCCHHHHHHHHHHH
Q 010202 496 V-KQKHMYDAAEKIEAVM 512 (515)
Q Consensus 496 ~-~~~g~~~~a~~~~~~m 512 (515)
+ -+.|.-..|+.+++..
T Consensus 595 lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 595 LEEEHGLARHAMSIYERA 612 (835)
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 3 3458888888888764
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.2e-08 Score=88.23 Aligned_cols=358 Identities=11% Similarity=0.048 Sum_probs=226.7
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHc
Q 010202 138 EMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKN-TETMNLLLDTLCKE 216 (515)
Q Consensus 138 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~ 216 (515)
-...+-|-+.|++++|++.+.+..+..+..+-.|.....+|...|+|+++.+.-.+..+. .|+ +..+..-..++-..
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQL 196 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhh
Confidence 345567889999999999999998877766677777889999999999999988888774 554 44566667777788
Q ss_pred CCHHHHHHHHHH--hhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHh-CC--CCccHhHHHHHHHHHH--------
Q 010202 217 GKVELARSVFLE--LKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKG-HG--CHPCVISYSTIIQSYC-------- 283 (515)
Q Consensus 217 ~~~~~a~~~~~~--~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~--~~~~~~~~~~li~~~~-------- 283 (515)
|++++|..-..- +..++.... + ..++.-.. -..|....++-.+ .+ +-|+.....+....+.
T Consensus 197 g~~~eal~D~tv~ci~~~F~n~s-~-~~~~eR~L----kk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~ 270 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQNAS-I-EPMAERVL----KKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFD 270 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcccch-h-HHHHHHHH----HHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccccc
Confidence 888877643322 222222111 1 01111100 1112222222111 11 2233222222222111
Q ss_pred ---------------h--cC---ChhHHHHHHHHHHHC-CCCC--C---------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 010202 284 ---------------R--QY---NFSKVYELLDEMQAQ-GCPP--N---------VVTYTTVMSYLAKSGDFEEAIRITE 331 (515)
Q Consensus 284 ---------------~--~g---~~~~A~~~~~~m~~~-g~~~--~---------~~~~~~li~~~~~~g~~~~a~~~~~ 331 (515)
. .+ .+..|...+.+-... -..+ + ..+.......+.-.|+.-.|.+-|+
T Consensus 271 ~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~ 350 (606)
T KOG0547|consen 271 NKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFD 350 (606)
T ss_pred CCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHH
Confidence 0 01 233333333221110 0011 1 1111112222344688899999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Q 010202 332 KMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCK 411 (515)
Q Consensus 332 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 411 (515)
..++.... +...|--+..+|....+.++....|+ ...+.+. -|+.+|..-.+.+.-.+++++|..=|++.+... +
T Consensus 351 ~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~-~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~--p 425 (606)
T KOG0547|consen 351 AAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFN-KAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD--P 425 (606)
T ss_pred HHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHH-HHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC--h
Confidence 99887533 33337777788999999999999998 5554332 356678777777888899999999999999854 3
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------
Q 010202 412 PNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPR------ 485 (515)
Q Consensus 412 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~------ 485 (515)
-+...|..+..+..+.+.+++++ ..|++..++++ -.++.|+-....+...++++.|.+.|+..++ +.|+
T Consensus 426 e~~~~~iQl~~a~Yr~~k~~~~m-~~Fee~kkkFP--~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--LE~~~~~~~v 500 (606)
T KOG0547|consen 426 ENAYAYIQLCCALYRQHKIAESM-KTFEEAKKKFP--NCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--LEPREHLIIV 500 (606)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCC--CCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--hccccccccc
Confidence 44667777877888999999999 99999998654 3466788889999999999999999999886 3444
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010202 486 ---YQTCRLILDEVKQKHMYDAAEKIEAVMKK 514 (515)
Q Consensus 486 ---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 514 (515)
+.+...++..-. .+++..|++++++..+
T Consensus 501 ~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e 531 (606)
T KOG0547|consen 501 NAAPLVHKALLVLQW-KEDINQAENLLRKAIE 531 (606)
T ss_pred cchhhhhhhHhhhch-hhhHHHHHHHHHHHHc
Confidence 222222222112 3888999998887654
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.24 E-value=7e-07 Score=84.51 Aligned_cols=383 Identities=10% Similarity=0.104 Sum_probs=193.2
Q ss_pred hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010202 112 DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTF 191 (515)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 191 (515)
++.++|......+. .+.+-|..++..=+-++.+.+++++|..+.+.-........-.+ .-..+..+.+..++|+..+
T Consensus 26 ~e~e~a~k~~~Kil--~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~f-EKAYc~Yrlnk~Dealk~~ 102 (652)
T KOG2376|consen 26 GEYEEAVKTANKIL--SIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFF-EKAYCEYRLNKLDEALKTL 102 (652)
T ss_pred hHHHHHHHHHHHHH--hcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhH-HHHHHHHHcccHHHHHHHH
Confidence 36777888777775 23356677777777778888888888865554221111111111 1234556778888888888
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCh----------------------------hhHHH-
Q 010202 192 DELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNA----------------------------HTFNI- 242 (515)
Q Consensus 192 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------------------~~~~~- 242 (515)
+-.. +.+..+...-...+.+.|++++|..+|..+.+...++. .+|..
T Consensus 103 ~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~ 178 (652)
T KOG2376|consen 103 KGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELL 178 (652)
T ss_pred hccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHH
Confidence 7222 12344555566677888888888888888632211111 11111
Q ss_pred --HHHHHHccCChhHHHHHHHHHHhCCC------Ccc---Hh-----HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 010202 243 --FIHGWCKINRVDEAQWTIQEMKGHGC------HPC---VI-----SYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPN 306 (515)
Q Consensus 243 --li~~~~~~g~~~~A~~~~~~~~~~~~------~~~---~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 306 (515)
..-.+...|++.+|+++++...+.+. ..+ .. .---|...+-..|+.++|.+++....+... +|
T Consensus 179 yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~-~D 257 (652)
T KOG2376|consen 179 YNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP-AD 257 (652)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC-CC
Confidence 12233344555555555555421110 000 00 011122333445555555555555555432 22
Q ss_pred HH----HHHHHHHHHHhcCCH-H-HHHHHHHH-----------------------------------------HHhc-CC
Q 010202 307 VV----TYTTVMSYLAKSGDF-E-EAIRITEK-----------------------------------------MKIV-GS 338 (515)
Q Consensus 307 ~~----~~~~li~~~~~~g~~-~-~a~~~~~~-----------------------------------------~~~~-~~ 338 (515)
.. .-|.++.. ..-.++ + .++..++. .... +.
T Consensus 258 ~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~ 336 (652)
T KOG2376|consen 258 EPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGM 336 (652)
T ss_pred chHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcc
Confidence 21 11111110 000000 0 00000000 0000 00
Q ss_pred CCCHHHHHHHHHHHH--hcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH--------HHHhCC
Q 010202 339 KPDSRFFNCLIYTLG--RASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLE--------EMNKLE 408 (515)
Q Consensus 339 ~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~~ 408 (515)
.|. ..+..++.... +......+..++. ...+..........-.++......|+++.|++++. .+.+.+
T Consensus 337 ~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~-~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~ 414 (652)
T KOG2376|consen 337 SPE-SLFPILLQEATKVREKKHKKAIELLL-QFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAK 414 (652)
T ss_pred Cch-HHHHHHHHHHHHHHHHHHhhhHHHHH-HHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhc
Confidence 111 11122221111 1113444555554 33322212223455566677778899999999988 555544
Q ss_pred CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 010202 409 HCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHL-SLD----ITTYTLVIHGLCRANKCEWAYLLFKEMIGHDIT 483 (515)
Q Consensus 409 ~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 483 (515)
..| .+...+...+.+.++.+.|. .++.+....... .+. ..++.-.+..-.+.|+.++|..+++++.+.. +
T Consensus 415 -~~P--~~V~aiv~l~~~~~~~~~a~-~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~ 489 (652)
T KOG2376|consen 415 -HLP--GTVGAIVALYYKIKDNDSAS-AVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-P 489 (652)
T ss_pred -cCh--hHHHHHHHHHHhccCCccHH-HHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-C
Confidence 333 45556666677777766666 666665542111 111 2234444455567799999999999998733 6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010202 484 PRYQTCRLILDEVKQKHMYDAAEKIEAV 511 (515)
Q Consensus 484 p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 511 (515)
+|..+...++.+|++. +.+.|+.+-+.
T Consensus 490 ~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 490 NDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred chHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 7778888888888765 45566555443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.8e-08 Score=86.47 Aligned_cols=307 Identities=13% Similarity=0.071 Sum_probs=204.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHH
Q 010202 166 VTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFG-LEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFI 244 (515)
Q Consensus 166 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 244 (515)
.+|...-.-..+.+-.++...|...+-.+.... ++-|+.....+.+.+...|+.++|+..|++...-.+.+........
T Consensus 194 ~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya 273 (564)
T KOG1174|consen 194 FDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYA 273 (564)
T ss_pred ccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHH
Confidence 345444333344444555555555554444332 3446777788888888888888888888886654444444444444
Q ss_pred HHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 010202 245 HGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFE 324 (515)
Q Consensus 245 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 324 (515)
-.+.+.|+.+....+...+.... .-+...|-.-.......+++..|+.+-++..+.+ +.+...+-.-...+...|+.+
T Consensus 274 ~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~ 351 (564)
T KOG1174|consen 274 VLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHT 351 (564)
T ss_pred HHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchH
Confidence 55567777777777777766532 1234445555555666788888888888777653 224445544456677788888
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHH-HHHH-hCCCHHHHHHHHH
Q 010202 325 EAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMI-TMFS-HHGHHEKAFHVLE 402 (515)
Q Consensus 325 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~g~~~~A~~~~~ 402 (515)
+|.-.|+...... +.+...|..|+.+|...|++.+|...-++.|... ..+..+.+.+. ..+. ....-++|.++++
T Consensus 352 ~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~--~~sA~~LtL~g~~V~~~dp~~rEKAKkf~e 428 (564)
T KOG1174|consen 352 QAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF--QNSARSLTLFGTLVLFPDPRMREKAKKFAE 428 (564)
T ss_pred HHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh--hcchhhhhhhcceeeccCchhHHHHHHHHH
Confidence 8888888877653 4677888999999998898888877766444432 23444444432 2222 2233478888888
Q ss_pred HHHhCCCCCCCH-HhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010202 403 EMNKLEHCKPNV-QTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHD 481 (515)
Q Consensus 403 ~m~~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 481 (515)
+-.+ +.|+. ...+.+...|...|..+.++ .+++.... ..||....+.|.+.+...+.+++|.+.|...++
T Consensus 429 k~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i-~LLe~~L~---~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr-- 499 (564)
T KOG1174|consen 429 KSLK---INPIYTPAVNLIAELCQVEGPTKDII-KLLEKHLI---IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR-- 499 (564)
T ss_pred hhhc---cCCccHHHHHHHHHHHHhhCccchHH-HHHHHHHh---hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--
Confidence 8777 45664 35666677788889998888 88888766 457888888888999888999999998888875
Q ss_pred CCCCH
Q 010202 482 ITPRY 486 (515)
Q Consensus 482 ~~p~~ 486 (515)
+.|+.
T Consensus 500 ~dP~~ 504 (564)
T KOG1174|consen 500 QDPKS 504 (564)
T ss_pred cCccc
Confidence 44543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.2e-07 Score=87.97 Aligned_cols=405 Identities=13% Similarity=0.060 Sum_probs=257.9
Q ss_pred CcCCHHHHHHHHHHh--hhCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCC--CCCHHHH
Q 010202 96 IQPSHYLVNKLIHRF--KDDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGH--IVTLNTI 171 (515)
Q Consensus 96 ~~p~~~~~~~ll~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~ 171 (515)
++-|...|..+.-+. ++++..+.+.|+... ++.-.....|..+.-.|..+|.-..|..+++.-.... +.+...+
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~--~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQAL--PFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 444666666555543 467888888888875 4444567889999999999999999999998876655 5555555
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHhhC--CC--CCCHHHHHHHHHHHHHc----C-------CHHHHHHHHHHhhcCCCC
Q 010202 172 AKVMRRFS-GAGQWEDAVRTFDELGTF--GL--EKNTETMNLLLDTLCKE----G-------KVELARSVFLELKSCIPP 235 (515)
Q Consensus 172 ~~li~~~~-~~g~~~~A~~~~~~m~~~--g~--~~~~~~~~~ll~~~~~~----~-------~~~~a~~~~~~~~~~~~~ 235 (515)
......|. +-+..++++++-.+..+. +. ...+..|..+.-+|... . ...++.+.+++..+..+.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44444444 356777777777666552 11 12333444444444322 1 134566666665444555
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHH
Q 010202 236 NAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQ-GCPPNVVTYTTVM 314 (515)
Q Consensus 236 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li 314 (515)
|..+...+.--|+..++++.|.+..++..+.+-.-+...|..+.-.+...+++.+|+.+.+..... |. |-.-...-+
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~ 554 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKI 554 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhh
Confidence 666666666778888999999999999988755678899999999999999999999998876653 21 111111111
Q ss_pred HHHHhcCCHHHHHHHHHHHHh---------------------cCC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010202 315 SYLAKSGDFEEAIRITEKMKI---------------------VGS-------KPDSRFFNCLIYTLGRASRVQEAVYVYQ 366 (515)
Q Consensus 315 ~~~~~~g~~~~a~~~~~~~~~---------------------~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~ 366 (515)
..-...++.+++......+.. .|+ .....++..+..... -+.+.+. +.
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a--~~~~~~~--se 630 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA--SQLKSAG--SE 630 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH--hhhhhcc--cc
Confidence 111223444444333322211 000 011122222222111 1111100 00
Q ss_pred hhchhCCCC--CC------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHH
Q 010202 367 VEMPENGVA--PD------TSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLL 438 (515)
Q Consensus 367 ~~~~~~~~~--~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 438 (515)
..+...... |+ ...|......+.+.+..++|...+.+..... +-....|......+...|...+|. +.|
T Consensus 631 ~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~--~l~~~~~~~~G~~~~~~~~~~EA~-~af 707 (799)
T KOG4162|consen 631 LKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID--PLSASVYYLRGLLLEVKGQLEEAK-EAF 707 (799)
T ss_pred cccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc--hhhHHHHHHhhHHHHHHHhhHHHH-HHH
Confidence 011111111 22 2346666778888999999999999987743 445566666667788899999998 777
Q ss_pred HHHHHcCCCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010202 439 DDMVNKHHLSLD-ITTYTLVIHGLCRANKCEWAYL--LFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVMKKL 515 (515)
Q Consensus 439 ~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~l 515 (515)
..... +.|+ +....++..++.+.|+..-|.. ++.++.+.+ +-+...|..+...+.+.|+.+.|.+.|....+|
T Consensus 708 ~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 708 LVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 77755 5565 6678889999999998888887 999999755 456788999999999999999999999876543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.7e-06 Score=82.83 Aligned_cols=90 Identities=16% Similarity=0.076 Sum_probs=49.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010202 418 HPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLD-ITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEV 496 (515)
Q Consensus 418 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 496 (515)
..+...+-+.|+++.|. .+++.... -.|+ ++.|..-.+.+...|++++|..++++..+.+ .||...-.--..-.
T Consensus 375 y~laqh~D~~g~~~~A~-~yId~AId---HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYm 449 (700)
T KOG1156|consen 375 YFLAQHYDKLGDYEVAL-EYIDLAID---HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYM 449 (700)
T ss_pred HHHHHHHHHcccHHHHH-HHHHHHhc---cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHH
Confidence 34455566667777766 66666654 2344 3345445566666677777777776666533 34433322333333
Q ss_pred HhcCCHHHHHHHHHHH
Q 010202 497 KQKHMYDAAEKIEAVM 512 (515)
Q Consensus 497 ~~~g~~~~a~~~~~~m 512 (515)
.+..+.++|.++....
T Consensus 450 LrAn~i~eA~~~~skF 465 (700)
T KOG1156|consen 450 LRANEIEEAEEVLSKF 465 (700)
T ss_pred HHccccHHHHHHHHHh
Confidence 5556666666655443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.7e-07 Score=89.67 Aligned_cols=270 Identities=10% Similarity=-0.021 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 010202 134 SEIYEMMVDILGKVRQMDQMRALLEEMSKGHIV---TLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLL 210 (515)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 210 (515)
+..|..+...+...|+.+.+.+.+....+..+. ...........+...|++++|.+.+++..+.. +.|...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 445666667777777777777777666543332 23333333456677889999999998887752 334444432 2
Q ss_pred HHHH----HcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcC
Q 010202 211 DTLC----KEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQY 286 (515)
Q Consensus 211 ~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 286 (515)
..+. ..+..+.+.+.+.......+........+...+...|++++|...+++..+.. +.+...+..+...+...|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 2222 23445555555544222334444555666778888899999999999888764 345667778888888899
Q ss_pred ChhHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHHHH-H--HHHHHHHhcCCHH
Q 010202 287 NFSKVYELLDEMQAQGC-PPNV--VTYTTVMSYLAKSGDFEEAIRITEKMKIVGS-KPDSRFF-N--CLIYTLGRASRVQ 359 (515)
Q Consensus 287 ~~~~A~~~~~~m~~~g~-~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~g~~~ 359 (515)
++++|+.++++...... .|+. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 99999999888776422 1222 3355677788888999999999988754322 1112111 1 2223333334322
Q ss_pred HHHHH---HHhhchhCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010202 360 EAVYV---YQVEMPENGV-APDTSTFNTMITMFSHHGHHEKAFHVLEEMNKL 407 (515)
Q Consensus 360 ~A~~~---~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 407 (515)
.+.+. .. ....... ............++...|+.++|..+++.+...
T Consensus 243 ~~~~w~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 243 VGDRWEDLAD-YAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred hHHHHHHHHH-HHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 22222 11 1111000 111122224556677788888888888877653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-08 Score=98.07 Aligned_cols=244 Identities=19% Similarity=0.201 Sum_probs=155.8
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-----C-CCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHhh---c
Q 010202 162 KGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTF-----G-LEKNTETM-NLLLDTLCKEGKVELARSVFLELK---S 231 (515)
Q Consensus 162 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~---~ 231 (515)
...|.-+.+...+...|...|++++|+.+++...+. | ..|.+.+. +.+...|...+++++|..+|+++. .
T Consensus 193 ~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 193 DEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred cCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 355556666666788888888888888888776553 2 13444433 347778888889888888888732 1
Q ss_pred ---C--CCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC-----CC-CccH-hHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010202 232 ---C--IPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGH-----GC-HPCV-ISYSTIIQSYCRQYNFSKVYELLDEMQ 299 (515)
Q Consensus 232 ---~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 299 (515)
| .+.-..+++.|...|.+.|++++|...+++..+. |. .|.+ ..++.+...+...+++++|..+++...
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al 352 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL 352 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 1 2333556777888899999999988888776431 11 1222 235566677788888888888887655
Q ss_pred HC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----C--C-CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010202 300 AQ---GCPPN----VVTYTTVMSYLAKSGDFEEAIRITEKMKIVG----S--K-PDSRFFNCLIYTLGRASRVQEAVYVY 365 (515)
Q Consensus 300 ~~---g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~--~-~~~~~~~~li~~~~~~g~~~~A~~~~ 365 (515)
+. -+.++ ..+++.+...|.+.|++++|.++|++++... - . -....++.|...|.+.+++++|.++|
T Consensus 353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~ 432 (508)
T KOG1840|consen 353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLF 432 (508)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHH
Confidence 42 11222 3567888888888888888888888776421 1 1 11345566667777777777777776
Q ss_pred Hh---hchhCCC-CCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010202 366 QV---EMPENGV-APD-TSTFNTMITMFSHHGHHEKAFHVLEEMN 405 (515)
Q Consensus 366 ~~---~~~~~~~-~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 405 (515)
.. .+...|. .|+ ..+|..|...|...|++++|+++.+...
T Consensus 433 ~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 433 EEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 61 1122221 122 3456666666666677766666665554
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.4e-08 Score=90.38 Aligned_cols=204 Identities=11% Similarity=-0.038 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHh
Q 010202 205 TMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCR 284 (515)
Q Consensus 205 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 284 (515)
.|..+...+...|+.++|...|++.....|.+...|+.+...+...|++++|...|++..+.. +-+..+|..+..++..
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 345555556666666666666666444445556666666666666666666666666666542 2234555666666666
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH--HH
Q 010202 285 QYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQE--AV 362 (515)
Q Consensus 285 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~--A~ 362 (515)
.|++++|++.|+...+. .|+..........+...++.++|.+.+.+..... .++... ..+...+ .|+... +.
T Consensus 145 ~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~-~~~~~~~--lg~~~~~~~~ 218 (296)
T PRK11189 145 GGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWG-WNIVEFY--LGKISEETLM 218 (296)
T ss_pred CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccH-HHHHHHH--ccCCCHHHHH
Confidence 66666666666666654 2222111111222334556666666665544321 222211 1222222 333322 22
Q ss_pred HHHHhhchhCCC--C-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHH
Q 010202 363 YVYQVEMPENGV--A-PDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFH 418 (515)
Q Consensus 363 ~~~~~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~ 418 (515)
..+.... +... . .....|..+...+.+.|++++|+..|++..+.+ +||..-+.
T Consensus 219 ~~~~~~~-~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~--~~~~~e~~ 274 (296)
T PRK11189 219 ERLKAGA-TDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN--VYNFVEHR 274 (296)
T ss_pred HHHHhcC-CCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CchHHHHH
Confidence 2221011 1100 0 123467777778888888888888888887744 34544443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.3e-08 Score=94.49 Aligned_cols=246 Identities=17% Similarity=0.178 Sum_probs=132.5
Q ss_pred CCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC-----CC-CccHhH-HHHHHHHHHhcCChhHHHHHHHHHHHC---
Q 010202 232 CIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGH-----GC-HPCVIS-YSTIIQSYCRQYNFSKVYELLDEMQAQ--- 301 (515)
Q Consensus 232 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~--- 301 (515)
..|.-..+...+...|...|+++.|..+++...+. |. .|...+ .+.+...|...+++++|..+|+++...
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34445566667888888888888888888776543 10 122222 233556677777888888877776641
Q ss_pred --CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHhhch
Q 010202 302 --GC-PP-NVVTYTTVMSYLAKSGDFEEAIRITEKMKIV-----GS-KPDS-RFFNCLIYTLGRASRVQEAVYVYQVEMP 370 (515)
Q Consensus 302 --g~-~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~ 370 (515)
|- .| -..+++.|..+|.+.|++++|...++...+. |. .|.+ ..++.+...++..+++++|..++...+.
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 21 11 1345666666777777777777766655431 11 1111 1234445556666666666666552111
Q ss_pred h--CCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhC-----CCCCCC-HHhHHHHHHHHHhcCChHHHHHHHH
Q 010202 371 E--NGVAPD----TSTFNTMITMFSHHGHHEKAFHVLEEMNKL-----EHCKPN-VQTFHPLLKSCFKTGKTDECLSQLL 438 (515)
Q Consensus 371 ~--~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~ 438 (515)
. .-+.++ ..+++.|...|.+.|++++|.+++++++.. |+..+. ...++.+...|.+.+.+++|. ++|
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~-~l~ 432 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAE-QLF 432 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHH-HHH
Confidence 1 001111 235566666666666666666666665542 111111 234455555566666666555 555
Q ss_pred HHHHH---cCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010202 439 DDMVN---KHHL-SLD-ITTYTLVIHGLCRANKCEWAYLLFKEMI 478 (515)
Q Consensus 439 ~~~~~---~~~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 478 (515)
.+... ..|. .|+ ..+|..|...|.+.|++++|.++.+...
T Consensus 433 ~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 433 EEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 54322 1221 122 2345556666666666666666655554
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.5e-06 Score=77.18 Aligned_cols=116 Identities=11% Similarity=0.087 Sum_probs=70.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHH-HHHHHHhcCCHHH
Q 010202 391 HGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTL-VIHGLCRANKCEW 469 (515)
Q Consensus 391 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~-li~~~~~~g~~~~ 469 (515)
..++++.+-.+..+..-- ...|... ..+..+.+..|++.+|. ++|-.+.. -.+ .|..+|.. +.++|.+.|+++.
T Consensus 372 ~~qFddVl~YlnSi~sYF-~NdD~Fn-~N~AQAk~atgny~eaE-elf~~is~-~~i-kn~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 372 SFQFDDVLTYLNSIESYF-TNDDDFN-LNLAQAKLATGNYVEAE-ELFIRISG-PEI-KNKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHh-cCcchhh-hHHHHHHHHhcChHHHH-HHHhhhcC-hhh-hhhHHHHHHHHHHHHhcCCchH
Confidence 334555555555544422 1222222 23566777888888887 77766633 122 35566654 5678889999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHh
Q 010202 470 AYLLFKEMIGHDITPRYQTCRL-ILDEVKQKHMYDAAEKIEAVMKK 514 (515)
Q Consensus 470 A~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~m~~ 514 (515)
|++++-++ +-+.+..+.-. +.+-|.+.+.+--|-+.|+.+.+
T Consensus 447 AW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 447 AWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred HHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 98887665 33334433333 34467888888888888887764
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.8e-07 Score=80.88 Aligned_cols=286 Identities=14% Similarity=0.117 Sum_probs=160.7
Q ss_pred HHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH-HHHHHHHcC
Q 010202 139 MMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNL-LLDTLCKEG 217 (515)
Q Consensus 139 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-ll~~~~~~~ 217 (515)
+.+.-+.+..++++|++++..-.++++.+...+..+..+|....++..|-..++++-.. .|...-|.. -...+.+.+
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhc
Confidence 33334455566777777777666666666666666677777777777777777766542 344443322 233444556
Q ss_pred CHHHHHHHHHHhhcCCCCChhhHHHHHH--HHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHH
Q 010202 218 KVELARSVFLELKSCIPPNAHTFNIFIH--GWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELL 295 (515)
Q Consensus 218 ~~~~a~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 295 (515)
.+.+|+++...|... ++...-..-+. .....+++..+..++++....| +..+.+...-...+.|++++|++-|
T Consensus 93 i~ADALrV~~~~~D~--~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN--PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred ccHHHHHHHHHhcCC--HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHH
Confidence 666666666665432 22111111111 2234566666777776665433 3444444444455667777777777
Q ss_pred HHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------------CCHH--------HHHHHHH---
Q 010202 296 DEMQA-QGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSK-------------PDSR--------FFNCLIY--- 350 (515)
Q Consensus 296 ~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-------------~~~~--------~~~~li~--- 350 (515)
+...+ .|..| ...|+..+. ..+.|+++.|++...++.++|+. ||+. .-++++.
T Consensus 168 qaAlqvsGyqp-llAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 168 QAALQVSGYQP-LLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred HHHHhhcCCCc-hhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence 66555 34443 345554443 33556677777777776665532 1111 1123332
Q ss_pred ----HHHhcCCHHHHHHHHHhhchh-CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHH
Q 010202 351 ----TLGRASRVQEAVYVYQVEMPE-NGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCF 425 (515)
Q Consensus 351 ----~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~ 425 (515)
.+.+.|+++.|.+.+. .|.- .....|++|...+.-.= ..+++.+..+-+.-+.... +-...||..++-.||
T Consensus 246 LKaAIeyq~~n~eAA~eaLt-DmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n--PfP~ETFANlLllyC 321 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALT-DMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN--PFPPETFANLLLLYC 321 (459)
T ss_pred hhhhhhhhcccHHHHHHHhh-cCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC--CCChHHHHHHHHHHh
Confidence 3456788888888877 6643 22345666666553322 2345555555555555544 234568888888888
Q ss_pred hcCChHHHHHHHH
Q 010202 426 KTGKTDECLSQLL 438 (515)
Q Consensus 426 ~~g~~~~A~~~~~ 438 (515)
+..-++-|. .++
T Consensus 322 KNeyf~lAA-DvL 333 (459)
T KOG4340|consen 322 KNEYFDLAA-DVL 333 (459)
T ss_pred hhHHHhHHH-HHH
Confidence 888777776 554
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=8e-08 Score=88.66 Aligned_cols=205 Identities=12% Similarity=0.007 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 010202 134 SEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTL 213 (515)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 213 (515)
...|..+...|.+.|+.++|...|++..+.++.+..++..+...+...|++++|++.|++..+.. +-+..++..+..++
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l 142 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 45677888888899999999999999988888888888888899999999999999999988743 23567777888888
Q ss_pred HHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHH
Q 010202 214 CKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYE 293 (515)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 293 (515)
...|++++|.+.|+......|.+.. .......+...++.++|...|++..... .|+. |.. .......|+.+++ +
T Consensus 143 ~~~g~~~eA~~~~~~al~~~P~~~~-~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~--~~~-~~~~~~lg~~~~~-~ 216 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQDDPNDPY-RALWLYLAESKLDPKQAKENLKQRYEKL-DKEQ--WGW-NIVEFYLGKISEE-T 216 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHccCCHHHHHHHHHHHHhhC-Cccc--cHH-HHHHHHccCCCHH-H
Confidence 8889999999999885444444432 2222233445678899999887655432 2332 221 2223335665544 3
Q ss_pred HHHHHHHCC---C--C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 010202 294 LLDEMQAQG---C--P-PNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFN 346 (515)
Q Consensus 294 ~~~~m~~~g---~--~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 346 (515)
.+..+.+.. . . ....+|..+...+.+.|++++|...|++..+.+ ++|..-+.
T Consensus 217 ~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~ 274 (296)
T PRK11189 217 LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHR 274 (296)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHH
Confidence 444444321 1 1 123578888888888999999999998888765 34544333
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.6e-07 Score=84.87 Aligned_cols=310 Identities=10% Similarity=-0.023 Sum_probs=170.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHH
Q 010202 165 IVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGL-EKNT-ETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNI 242 (515)
Q Consensus 165 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 242 (515)
|...-.+..+...+...|+.+++.+.+....+... .++. .........+...|++++|.+.+++.....|.+...+..
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~ 82 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL 82 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 44455566666777777878777766666554321 1222 122222335567788999988888865556666655553
Q ss_pred ---HHHHHHccCChhHHHHHHHHHHhCCCCcc-HhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010202 243 ---FIHGWCKINRVDEAQWTIQEMKGHGCHPC-VISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLA 318 (515)
Q Consensus 243 ---li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 318 (515)
........+..+.+.+.++... +..|+ ......+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~ 159 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWA--PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLE 159 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccC--cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 2222222444555555554411 11222 3344455667788888888988888888764 334667777788888
Q ss_pred hcCCHHHHHHHHHHHHhcCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHhhchhCCC-CCCHHHH-H--HHHHHHHhC
Q 010202 319 KSGDFEEAIRITEKMKIVGS-KPDS--RFFNCLIYTLGRASRVQEAVYVYQVEMPENGV-APDTSTF-N--TMITMFSHH 391 (515)
Q Consensus 319 ~~g~~~~a~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~ 391 (515)
..|++++|...+++..+... .++. ..|..+...+...|++++|..+++ ....... .+..... + .++.-+...
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYD-THIAPSAESDPALDLLDAASLLWRLELA 238 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHH-HHhccccCCChHHHHhhHHHHHHHHHhc
Confidence 88888888888888776432 1222 345567777888888888888888 5432211 1111111 1 222233334
Q ss_pred CCHHHHHHH--HHHH-HhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCC---C----CCHHHHHHHHHHH
Q 010202 392 GHHEKAFHV--LEEM-NKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHL---S----LDITTYTLVIHGL 461 (515)
Q Consensus 392 g~~~~A~~~--~~~m-~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~----p~~~~~~~li~~~ 461 (515)
|....+.++ +... ..................++...|+.++|. .+++.+.....- . ..+.......-++
T Consensus 239 g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~-~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~ 317 (355)
T cd05804 239 GHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALD-KLLAALKGRASSADDNKQPARDVGLPLAEALYA 317 (355)
T ss_pred CCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHhccCchhhhHHhhhHHHHHHHHH
Confidence 433333222 1111 111000011112224555667778888877 777776552111 0 0111222223345
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 010202 462 CRANKCEWAYLLFKEMIG 479 (515)
Q Consensus 462 ~~~g~~~~A~~~~~~m~~ 479 (515)
...|+.++|.+.+.+...
T Consensus 318 ~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 318 FAEGNYATALELLGPVRD 335 (355)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 577888888888777654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-07 Score=78.98 Aligned_cols=210 Identities=13% Similarity=0.123 Sum_probs=156.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 010202 274 SYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLG 353 (515)
Q Consensus 274 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 353 (515)
+..-|.-+|.+.|++..|.+-+++.++.. +.+..++..+...|.+.|..+.|.+.|++..+.. +.+..+.|....-+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 34556677888888888888888888774 2256778888888888888888888888888764 556677888888888
Q ss_pred hcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHH
Q 010202 354 RASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDEC 433 (515)
Q Consensus 354 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A 433 (515)
..|++++|...|+..+......--..+|..+.-+..+.|+.+.|.+.|++..+.. +-...+...+.....+.|++-.|
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHHHHhcccchHH
Confidence 8889999988888555443333345678888888888899999999998888854 33355677777888888888888
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010202 434 LSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLI 492 (515)
Q Consensus 434 ~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 492 (515)
. .+++..... + .++..+.-.-|..-.+.|+.+.|.++=..+.+ ..|...-+..+
T Consensus 193 r-~~~~~~~~~-~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--~fP~s~e~q~f 246 (250)
T COG3063 193 R-LYLERYQQR-G-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--LFPYSEEYQTF 246 (250)
T ss_pred H-HHHHHHHhc-c-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHHhH
Confidence 7 777777663 2 37777777777778888888888887776664 45665555443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.5e-07 Score=78.70 Aligned_cols=198 Identities=13% Similarity=0.070 Sum_probs=153.5
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 010202 136 IYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCK 215 (515)
Q Consensus 136 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 215 (515)
+...|.-.|...|+...|.+-+++..+.++.+..++..+...|-+.|..+.|.+.|++..+.. +-+-...|...-.+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 344566678888899999999988888888888888888888888888888888888888753 3356777888888888
Q ss_pred cCCHHHHHHHHHH-hhc-CCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHH
Q 010202 216 EGKVELARSVFLE-LKS-CIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYE 293 (515)
Q Consensus 216 ~~~~~~a~~~~~~-~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 293 (515)
.|++++|.+.|++ +.. ..+.-..+|..+.-+..+.|+.+.|...|++..+.. +-...+.-.+.......|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 8888888888888 333 344556778888888888888888888888887764 2234556677778888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010202 294 LLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIV 336 (515)
Q Consensus 294 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 336 (515)
+++.....+. ++....-..|..-...|+-+.+-+.=.++.+.
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 8888877765 77777777788878888888777776666554
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4e-06 Score=80.26 Aligned_cols=301 Identities=14% Similarity=0.174 Sum_probs=179.9
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----------------C------CHHHHHHHHH
Q 010202 135 EIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGA----------------G------QWEDAVRTFD 192 (515)
Q Consensus 135 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~----------------g------~~~~A~~~~~ 192 (515)
..|++|.+.|.+.|.+++|.++|++....- .+..-+..+...|++- | +++-.+..|+
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v-~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e 327 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTV-MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE 327 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhh-eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence 578999999999999999999999876532 2222222223333321 1 1222333344
Q ss_pred HHhhCCC-----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC------ChhhHHHHHHHHHccCChhH
Q 010202 193 ELGTFGL-----------EKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPP------NAHTFNIFIHGWCKINRVDE 255 (515)
Q Consensus 193 ~m~~~g~-----------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~ 255 (515)
.+...+. +.++.+|..-+.. ..|+..+-...|.+....+.| -...|..+.+.|-..|+++.
T Consensus 328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~ 405 (835)
T KOG2047|consen 328 SLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDD 405 (835)
T ss_pred HHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHH
Confidence 4433210 1233333333322 245566667777764333222 23468889999999999999
Q ss_pred HHHHHHHHHhCCCCcc---HhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-----------C------CHHHHHHHHH
Q 010202 256 AQWTIQEMKGHGCHPC---VISYSTIIQSYCRQYNFSKVYELLDEMQAQGCP-----------P------NVVTYTTVMS 315 (515)
Q Consensus 256 A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----------~------~~~~~~~li~ 315 (515)
|..+|++..+...+.- ..+|......=.+..+++.|+++.+.....--. + +...|...++
T Consensus 406 aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~D 485 (835)
T KOG2047|consen 406 ARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYAD 485 (835)
T ss_pred HHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHH
Confidence 9999999887543221 345555555556778888999888776532111 1 2234555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCH-HHHHHHHHHHHh---C
Q 010202 316 YLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDT-STFNTMITMFSH---H 391 (515)
Q Consensus 316 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~li~~~~~---~ 391 (515)
.--..|-++....+++.+....+. ++...-.....+-...-++++.++|++.+. .-..|++ ..|+..+.-+.+ .
T Consensus 486 leEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~-LFk~p~v~diW~tYLtkfi~rygg 563 (835)
T KOG2047|consen 486 LEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGIS-LFKWPNVYDIWNTYLTKFIKRYGG 563 (835)
T ss_pred HHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCc-cCCCccHHHHHHHHHHHHHHHhcC
Confidence 556678889999999999876543 222222222233455668899999983332 2223443 367766655543 3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHH--HHhcCChHHHHHHHHHHHHH
Q 010202 392 GHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKS--CFKTGKTDECLSQLLDDMVN 443 (515)
Q Consensus 392 g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~--~~~~g~~~~A~~~~~~~~~~ 443 (515)
..++.|..+|++..+ | ++|...-+.-|+-+ =-+.|....|+ .++++...
T Consensus 564 ~klEraRdLFEqaL~-~-Cpp~~aKtiyLlYA~lEEe~GLar~am-siyerat~ 614 (835)
T KOG2047|consen 564 TKLERARDLFEQALD-G-CPPEHAKTIYLLYAKLEEEHGLARHAM-SIYERATS 614 (835)
T ss_pred CCHHHHHHHHHHHHh-c-CCHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHh
Confidence 468999999999998 5 67765443333322 22457777777 77766544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.6e-06 Score=79.45 Aligned_cols=403 Identities=12% Similarity=0.076 Sum_probs=240.4
Q ss_pred CCcCCHHHHHHHHHHhhhCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHH
Q 010202 95 AIQPSHYLVNKLIHRFKDDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKV 174 (515)
Q Consensus 95 g~~p~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 174 (515)
+-+++....-.+.-.|-++.++|....+.+.+ +-..+.+.|..+.-.+-...++++|++.|......++.+...+.-+
T Consensus 38 ~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr--~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDl 115 (700)
T KOG1156|consen 38 PEHGESLAMKGLTLNCLGKKEEAYELVRLGLR--NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDL 115 (700)
T ss_pred CccchhHHhccchhhcccchHHHHHHHHHHhc--cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 55667777777777777888888888877752 3344667788887777778889999999998888777777776666
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC--CCCChhhHHHHH------HH
Q 010202 175 MRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSC--IPPNAHTFNIFI------HG 246 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~li------~~ 246 (515)
.-.-++.|+++-....-..+.+.. +-....|..+..++.-.|+...|..+.+..... ..|+...+.-.. ..
T Consensus 116 slLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i 194 (700)
T KOG1156|consen 116 SLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQI 194 (700)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 556666667666666666655531 224455666666667777777777777764332 234544443322 23
Q ss_pred HHccCChhHHHHHHHHHHhCCCCccHh-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHH
Q 010202 247 WCKINRVDEAQWTIQEMKGHGCHPCVI-SYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLA-KSGDFE 324 (515)
Q Consensus 247 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~ 324 (515)
..+.|..++|.+.+..-... ..|-. .-..-...+.+.+++++|..++..+... .||...|...+..+. +-.+..
T Consensus 195 ~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~ 270 (700)
T KOG1156|consen 195 LIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDML 270 (700)
T ss_pred HHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhH
Confidence 34456666666655544332 11222 2233445566677777777777777665 455544444333322 222222
Q ss_pred HHH-HHHHH----------------------------------HHhcCCCCCHHHHHHHHHHHHhcCCH---HH-HHHHH
Q 010202 325 EAI-RITEK----------------------------------MKIVGSKPDSRFFNCLIYTLGRASRV---QE-AVYVY 365 (515)
Q Consensus 325 ~a~-~~~~~----------------------------------~~~~~~~~~~~~~~~li~~~~~~g~~---~~-A~~~~ 365 (515)
++. .+|.. ..+.|+++ ++..+...|-.-... ++ +..+.
T Consensus 271 ~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~ 347 (700)
T KOG1156|consen 271 EALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQ 347 (700)
T ss_pred HHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHH
Confidence 222 33333 33333322 122222222211111 11 11111
Q ss_pred HhhchhCC----------CCCCHHHHH--HHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCH-HhHHHHHHHHHhcCChHH
Q 010202 366 QVEMPENG----------VAPDTSTFN--TMITMFSHHGHHEKAFHVLEEMNKLEHCKPNV-QTFHPLLKSCFKTGKTDE 432 (515)
Q Consensus 366 ~~~~~~~~----------~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~g~~~~ 432 (515)
. .+...| -+|....|. .++..+-+.|+++.|..+++..+.+ .|+. ..|..-.+.+.+.|++++
T Consensus 348 ~-~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH---TPTliEly~~KaRI~kH~G~l~e 423 (700)
T KOG1156|consen 348 H-SLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH---TPTLIELYLVKARIFKHAGLLDE 423 (700)
T ss_pred h-hcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc---CchHHHHHHHHHHHHHhcCChHH
Confidence 1 111111 145555444 5677888999999999999999884 4664 456666688899999999
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--C----HHHHHHHH--HHHHhcCCHHH
Q 010202 433 CLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITP--R----YQTCRLIL--DEVKQKHMYDA 504 (515)
Q Consensus 433 A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~----~~~~~~ll--~~~~~~g~~~~ 504 (515)
|. ..+++..+ .. .+|...-.--+.-..++.+.++|.++.....+.|... + .-.|..+= .+|.+.|++..
T Consensus 424 Aa-~~l~ea~e-lD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ 500 (700)
T KOG1156|consen 424 AA-AWLDEAQE-LD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGL 500 (700)
T ss_pred HH-HHHHHHHh-cc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHH
Confidence 99 88888876 22 2454443355666778999999999998887766411 1 12344443 35778888888
Q ss_pred HHHHHHHHHh
Q 010202 505 AEKIEAVMKK 514 (515)
Q Consensus 505 a~~~~~~m~~ 514 (515)
|.+=|..+.+
T Consensus 501 ALKkfh~i~k 510 (700)
T KOG1156|consen 501 ALKKFHEIEK 510 (700)
T ss_pred HHHHHhhHHH
Confidence 8887766543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.8e-08 Score=89.41 Aligned_cols=253 Identities=16% Similarity=0.213 Sum_probs=161.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChh
Q 010202 175 MRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVD 254 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 254 (515)
++-+.-.|++..++.-.+ .....-..+......+.+++...|+.+.+ ..++....+|.......+...+...++-+
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSSSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTSSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCCChhHHHHHHHHHHHhCccchH
Confidence 455666788888886655 22222122344555677888888886643 34554444667666666655554444555
Q ss_pred HHHHHHHHHHhCCCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010202 255 EAQWTIQEMKGHGCHP-CVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKM 333 (515)
Q Consensus 255 ~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 333 (515)
.+..-+++....+..+ +..........+...|++++|++++... .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555444333222 2222223334556678899998887642 35677778888999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 010202 334 KIVGSKPDSRFFNCLIYTL----GRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEH 409 (515)
Q Consensus 334 ~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 409 (515)
.+. ..|. +...+..++ ...+.+.+|..+|+ ++.+. ..+++.+.+.+..++...|++++|.+++.+..+.+
T Consensus 158 ~~~--~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~-El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~- 231 (290)
T PF04733_consen 158 QQI--DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFE-ELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD- 231 (290)
T ss_dssp HCC--SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHH-HHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--
T ss_pred Hhc--CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHH-HHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-
Confidence 875 3343 333344443 33456899999999 76553 45788889999999999999999999999987754
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHc
Q 010202 410 CKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNK 444 (515)
Q Consensus 410 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 444 (515)
+-+..+...++......|+..++.++++.++...
T Consensus 232 -~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 232 -PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp -CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred -cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 4456778888888888898855555888888763
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.1e-06 Score=90.12 Aligned_cols=337 Identities=10% Similarity=0.025 Sum_probs=202.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC-------CC--hhhHHHHHH
Q 010202 175 MRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIP-------PN--AHTFNIFIH 245 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~--~~~~~~li~ 245 (515)
.......|+++.+..++..+.......+..........+...|+++++..++........ +. ......+..
T Consensus 381 a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~ 460 (903)
T PRK04841 381 GWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQ 460 (903)
T ss_pred HHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHH
Confidence 344556777777777776653221112222333444556678899999988877432211 11 122233345
Q ss_pred HHHccCChhHHHHHHHHHHhCCCCcc----HhHHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CCCHHHHHHHHHH
Q 010202 246 GWCKINRVDEAQWTIQEMKGHGCHPC----VISYSTIIQSYCRQYNFSKVYELLDEMQAQ----GC-PPNVVTYTTVMSY 316 (515)
Q Consensus 246 ~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~~~~li~~ 316 (515)
.+...|++++|...+++....-...+ ....+.+...+...|++++|...+++.... |- .....++..+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 56678999999999998765311111 134456666778899999999998887642 11 1112345556677
Q ss_pred HHhcCCHHHHHHHHHHHHhc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHhhchhC--CCCC--CHHHHHHHH
Q 010202 317 LAKSGDFEEAIRITEKMKIV----GSK--P-DSRFFNCLIYTLGRASRVQEAVYVYQVEMPEN--GVAP--DTSTFNTMI 385 (515)
Q Consensus 317 ~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~--~~~~~~~li 385 (515)
+...|+++.|...+++.... +.. + ....+..+...+...|++++|...+. ..... ...+ ....+..+.
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~-~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCAR-KGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHH-HhHHhhhccCchHHHHHHHHHH
Confidence 78899999999988876552 211 1 22334455566777899999988887 43221 1112 233445566
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhH-----HHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCC---HHHHHHH
Q 010202 386 TMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTF-----HPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLD---ITTYTLV 457 (515)
Q Consensus 386 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~-----~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~---~~~~~~l 457 (515)
..+...|++++|.+.+.+.............+ ...+..+...|+.+.|. ..+...... ..... ...+..+
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~-~~l~~~~~~-~~~~~~~~~~~~~~~ 697 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAA-NWLRQAPKP-EFANNHFLQGQWRNI 697 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHH-HHHHhcCCC-CCccchhHHHHHHHH
Confidence 67788999999999988875521011111111 11123345578888877 666554331 11111 1113456
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010202 458 IHGLCRANKCEWAYLLFKEMIGH----DITPRY-QTCRLILDEVKQKHMYDAAEKIEAVMKK 514 (515)
Q Consensus 458 i~~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 514 (515)
..++...|++++|...+++.... |..++. .+...+..++...|+.++|.+.+....+
T Consensus 698 a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77788899999999999887652 323222 2444455567889999999998887654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-05 Score=81.07 Aligned_cols=265 Identities=12% Similarity=0.114 Sum_probs=144.5
Q ss_pred CCHHHHHHHHHHhhhCHHHHHHHHHHhcc-CCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCC---CCHHHHHH
Q 010202 98 PSHYLVNKLIHRFKDDWKSALGIFRWAGS-CPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHI---VTLNTIAK 173 (515)
Q Consensus 98 p~~~~~~~ll~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~ 173 (515)
.|...|..+|..-. ..-.++.++... ...-..|+.-.+..+.++...+-..+-+++++++.-.+. .+.+.-+.
T Consensus 950 ~D~~LW~~VL~e~n---~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnL 1026 (1666)
T KOG0985|consen 950 SDPDLWAKVLNEEN---PYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNL 1026 (1666)
T ss_pred cChHHHHHHHhccC---hHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhh
Confidence 46667776664221 112233444321 112234777888888999999999999999999865333 23333333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCh
Q 010202 174 VMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRV 253 (515)
Q Consensus 174 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 253 (515)
|+-...+ -+..+..+..+++...+ .|+ +...+...+-+++|..+|+... .+....+.||. ..+.+
T Consensus 1027 LiLtAik-ad~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEAF~ifkkf~----~n~~A~~VLie---~i~~l 1091 (1666)
T KOG0985|consen 1027 LILTAIK-ADRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEAFAIFKKFD----MNVSAIQVLIE---NIGSL 1091 (1666)
T ss_pred HHHHHhh-cChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHHHHHHHHhc----ccHHHHHHHHH---HhhhH
Confidence 3333333 34456666666665543 222 3334555566677777776532 23444444443 23455
Q ss_pred hHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010202 254 DEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKM 333 (515)
Q Consensus 254 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 333 (515)
+.|.+.-++.- ....|..+..+-.+.|...+|++-|-+.. |+..|..+++.+.+.|.+++-.+.+...
T Consensus 1092 dRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~Ma 1159 (1666)
T KOG0985|consen 1092 DRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMA 1159 (1666)
T ss_pred HHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 55555444432 34456666666666666666665543221 4556666666666666666666666655
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 010202 334 KIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLE 402 (515)
Q Consensus 334 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 402 (515)
++...+|.. -+.||-+|++.++..+.++.+. .||......+.+-|...|.++.|.-+|.
T Consensus 1160 Rkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~--------gpN~A~i~~vGdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1160 RKKVREPYI--DSELIFAYAKTNRLTELEEFIA--------GPNVANIQQVGDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred HHhhcCccc--hHHHHHHHHHhchHHHHHHHhc--------CCCchhHHHHhHHHhhhhhhHHHHHHHH
Confidence 555444433 2456666666666665555543 2444444455555555555555444443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.3e-05 Score=71.35 Aligned_cols=377 Identities=12% Similarity=0.051 Sum_probs=220.2
Q ss_pred hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010202 112 DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTF 191 (515)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 191 (515)
++...|..++++.. ..+-.-...+-.-+...+.+.|++++|...+.-+.+.+..+...-..|..++.-.|.+.+|..+-
T Consensus 36 rDytGAislLefk~-~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~ 114 (557)
T KOG3785|consen 36 RDYTGAISLLEFKL-NLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIA 114 (557)
T ss_pred ccchhHHHHHHHhh-ccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHH
Confidence 47778888888764 22222222233334455677899999999998887776666666566667777788888888876
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCcc
Q 010202 192 DELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPC 271 (515)
Q Consensus 192 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 271 (515)
.... .++..-..+.....+.++-++-..+++.+... ..---+|.......-.+.+|.+++.+....+ |+
T Consensus 115 ~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~e 183 (557)
T KOG3785|consen 115 EKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PE 183 (557)
T ss_pred hhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hh
Confidence 5532 23444455666666778877777777766542 2233345555555567889999999887653 56
Q ss_pred HhHHHHHHH-HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---------
Q 010202 272 VISYSTIIQ-SYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPD--------- 341 (515)
Q Consensus 272 ~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--------- 341 (515)
....|.-+. +|.+..-++-+.+++.-..+. ++.+..+.+.......+.=+-..|.+-.+.+...+-..-
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rH 262 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRH 262 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHc
Confidence 555555443 456666677788887776665 333445555555444443333344444555554431100
Q ss_pred ----------------------HHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCC------
Q 010202 342 ----------------------SRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGH------ 393 (515)
Q Consensus 342 ----------------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------ 393 (515)
+..--.|+-.|.+.+++++|..+.+ ...- ..|-......+ .++..|+
T Consensus 263 NLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K-dl~P--ttP~EyilKgv--v~aalGQe~gSre 337 (557)
T KOG3785|consen 263 NLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK-DLDP--TTPYEYILKGV--VFAALGQETGSRE 337 (557)
T ss_pred CeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh-hcCC--CChHHHHHHHH--HHHHhhhhcCcHH
Confidence 0011223444667777777777766 4321 12222222222 1222222
Q ss_pred -HHHHHHHHHHHHhCCCCCCCHH-hHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010202 394 -HEKAFHVLEEMNKLEHCKPNVQ-TFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAY 471 (515)
Q Consensus 394 -~~~A~~~~~~m~~~~~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 471 (515)
..-|.+.|+-.-+.+ ..-|.. --.++...+.-..++++.+ .++..+.. +-...|...|| +..+++..|.+.+|.
T Consensus 338 HlKiAqqffqlVG~Sa-~ecDTIpGRQsmAs~fFL~~qFddVl-~YlnSi~s-YF~NdD~Fn~N-~AQAk~atgny~eaE 413 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESA-LECDTIPGRQSMASYFFLSFQFDDVL-TYLNSIES-YFTNDDDFNLN-LAQAKLATGNYVEAE 413 (557)
T ss_pred HHHHHHHHHHHhcccc-cccccccchHHHHHHHHHHHHHHHHH-HHHHHHHH-HhcCcchhhhH-HHHHHHHhcChHHHH
Confidence 233444454443333 222211 1223344445556677766 67776665 44444554444 778899999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHH
Q 010202 472 LLFKEMIGHDITPRYQTCRLILDEV-KQKHMYDAAEKIEAV 511 (515)
Q Consensus 472 ~~~~~m~~~~~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~ 511 (515)
++|-+.....+ .|..+|.+++.-| .+.|..+.|.+++=.
T Consensus 414 elf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk 453 (557)
T KOG3785|consen 414 ELFIRISGPEI-KNKILYKSMLARCYIRNKKPQLAWDMMLK 453 (557)
T ss_pred HHHhhhcChhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHh
Confidence 99988764322 4667888877755 788888888776543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.6e-05 Score=76.88 Aligned_cols=319 Identities=11% Similarity=0.104 Sum_probs=217.7
Q ss_pred CCHHHHHHHHHHhh--hCHHHHHHHHHHhccC-CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHH
Q 010202 98 PSHYLVNKLIHRFK--DDWKSALGIFRWAGSC-PGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKV 174 (515)
Q Consensus 98 p~~~~~~~ll~~~~--~~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 174 (515)
.|+...+...+++- +-+.+-.++++.+... ..+.-+...-|.|+-.-.|. +..+..+..+++..-+.++ .
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa~~---i--- 1054 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAPD---I--- 1054 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCchh---H---
Confidence 46666666777764 4567788899988733 34444555556665544444 3344555555554433332 2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChh
Q 010202 175 MRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVD 254 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 254 (515)
......++-+++|..+|++. ..+....+.|+. .-+..+.|.+.-++.. .+.+|..+..+-.+.|.+.
T Consensus 1055 a~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n-----~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCN-----EPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhC-----ChHHHHHHHHHHHhcCchH
Confidence 44566788899999999875 345666666654 3466777777666653 4678999999999999999
Q ss_pred HHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010202 255 EAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMK 334 (515)
Q Consensus 255 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 334 (515)
+|.+-|-+.. |+..|.-+++...+.|.|++-.+++....+..-.|... +.+|-+|++.+++.+.++++.
T Consensus 1122 dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~--- 1190 (1666)
T KOG0985|consen 1122 DAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA--- 1190 (1666)
T ss_pred HHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc---
Confidence 9988775543 67789999999999999999999998888776666544 578889999999887666542
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCH
Q 010202 335 IVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNV 414 (515)
Q Consensus 335 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~ 414 (515)
-|+......+.+-|...|.++.|.-+|. ++..|..+...+...|++..|.+.-++. .+.
T Consensus 1191 ----gpN~A~i~~vGdrcf~~~~y~aAkl~y~----------~vSN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ 1249 (1666)
T KOG0985|consen 1191 ----GPNVANIQQVGDRCFEEKMYEAAKLLYS----------NVSNFAKLASTLVYLGEYQGAVDAARKA-------NST 1249 (1666)
T ss_pred ----CCCchhHHHHhHHHhhhhhhHHHHHHHH----------HhhhHHHHHHHHHHHHHHHHHHHHhhhc-------cch
Confidence 5777777778888888888998888887 4556888888888888888887766553 345
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010202 415 QTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLS--LDITTYTLVIHGLCRANKCEWAYLLFKEM 477 (515)
Q Consensus 415 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m 477 (515)
.||..+-.+|...+.+.-|- | +|+. ....-..-++.-|-..|-+++-+.+++..
T Consensus 1250 ktWK~VcfaCvd~~EFrlAQ------i---CGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1250 KTWKEVCFACVDKEEFRLAQ------I---CGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred hHHHHHHHHHhchhhhhHHH------h---cCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 57777777776665554331 1 2221 12233444555555555555555554443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.6e-05 Score=70.52 Aligned_cols=301 Identities=13% Similarity=0.078 Sum_probs=195.1
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH-HHHH
Q 010202 132 HSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETM-NLLL 210 (515)
Q Consensus 132 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~ll 210 (515)
.++.-.--+.+.+...|++.+|+.-|....+.++.+..++..-...|...|+-.-|+.=+.+..+ .+||...- ..-.
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg 113 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhc
Confidence 44555556778888899999999999999999999999988888899999999999998988887 47775432 2234
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCCC---hhhH------------HHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHH
Q 010202 211 DTLCKEGKVELARSVFLELKSCIPPN---AHTF------------NIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISY 275 (515)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~------------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 275 (515)
..+.+.|.++.|..-|+.+....+.+ ..++ ...+..+.-.|+...|+.....+.+.. +-|...|
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~ 192 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLR 192 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHH
Confidence 46779999999999999854332211 1111 223344556678888888888877653 3466667
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH----H---
Q 010202 276 STIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNC----L--- 348 (515)
Q Consensus 276 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----l--- 348 (515)
..-..+|...|++..|+.=++...+.... +..++--+-..+...|+.+.++...++.++. .||....-. |
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv 269 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKV 269 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHH
Confidence 77778888888888887766666554322 4555556666777788888888877777764 455432211 1
Q ss_pred H------HHHHhcCCHHHHHHHHHhhchhCCCCCCHH---HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCC-HHhHH
Q 010202 349 I------YTLGRASRVQEAVYVYQVEMPENGVAPDTS---TFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPN-VQTFH 418 (515)
Q Consensus 349 i------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~ 418 (515)
. ......++|.++.+-.+ ...+........ .+..+-.++...|++.+|++...+..+ +.|| ..++.
T Consensus 270 ~K~les~e~~ie~~~~t~cle~ge-~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~---~d~~dv~~l~ 345 (504)
T KOG0624|consen 270 VKSLESAEQAIEEKHWTECLEAGE-KVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD---IDPDDVQVLC 345 (504)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHH-HHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh---cCchHHHHHH
Confidence 1 11233455555555555 322222111112 223334455556677777777777666 3344 55666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHH
Q 010202 419 PLLKSCFKTGKTDECLSQLLDDMVN 443 (515)
Q Consensus 419 ~ll~~~~~~g~~~~A~~~~~~~~~~ 443 (515)
--..+|.-...++.|+ .=++...+
T Consensus 346 dRAeA~l~dE~YD~AI-~dye~A~e 369 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAI-HDYEKALE 369 (504)
T ss_pred HHHHHHhhhHHHHHHH-HHHHHHHh
Confidence 6666666666777776 55655554
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.2e-06 Score=81.21 Aligned_cols=192 Identities=19% Similarity=0.220 Sum_probs=116.5
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 010202 281 SYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQE 360 (515)
Q Consensus 281 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 360 (515)
+.....+|.+|+.+++.+++... -..-|..+..-|+..|+++.|.++|.+.- .++-.|.+|.+.|+|++
T Consensus 741 aai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 33445667777777776665532 23345666677777788888877776532 24456777888888888
Q ss_pred HHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHH
Q 010202 361 AVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDD 440 (515)
Q Consensus 361 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 440 (515)
|.++-. . -.|.......|-+-..-+-.+|++.+|.+++-.+ | .|+. .+..|-+.|..+.-+ ++..+
T Consensus 810 a~kla~-e--~~~~e~t~~~yiakaedldehgkf~eaeqlyiti---~--~p~~-----aiqmydk~~~~ddmi-rlv~k 875 (1636)
T KOG3616|consen 810 AFKLAE-E--CHGPEATISLYIAKAEDLDEHGKFAEAEQLYITI---G--EPDK-----AIQMYDKHGLDDDMI-RLVEK 875 (1636)
T ss_pred HHHHHH-H--hcCchhHHHHHHHhHHhHHhhcchhhhhheeEEc---c--CchH-----HHHHHHhhCcchHHH-HHHHH
Confidence 877765 2 2333445556666666666777777777766543 2 3543 345566667666655 44433
Q ss_pred HHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010202 441 MVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEA 510 (515)
Q Consensus 441 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 510 (515)
-. | ..-..|-..+..-|-..|+.++|.+.|-+.. -|.+-++.|..++.|++|-++-+
T Consensus 876 ~h---~-d~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 876 HH---G-DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred hC---h-hhhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHh
Confidence 21 1 1112344455666677788877777665552 36666677777777777766543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.8e-06 Score=74.91 Aligned_cols=324 Identities=14% Similarity=0.109 Sum_probs=211.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCh
Q 010202 174 VMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRV 253 (515)
Q Consensus 174 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 253 (515)
.+..+.+..+++.|++++..-.+.. +.+......|..+|....++..|-..++++....|.-..---.-...+.+.+.+
T Consensus 16 viy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ 94 (459)
T KOG4340|consen 16 VVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIY 94 (459)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhccc
Confidence 3566788899999999998877753 337778888889999999999999999998765544333333455677889999
Q ss_pred hHHHHHHHHHHhCCCCccHhHHHHHHHH--HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010202 254 DEAQWTIQEMKGHGCHPCVISYSTIIQS--YCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITE 331 (515)
Q Consensus 254 ~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 331 (515)
..|+++...|.+. ++...-..-+.+ ....+++..+..+.++....| +..+.+...-...+.|+++.|.+-|+
T Consensus 95 ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 95 ADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred HHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHH
Confidence 9999999998763 333222222222 345778888888888766433 33444444445568999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCC-------------CCHH---------------HHHH
Q 010202 332 KMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVA-------------PDTS---------------TFNT 383 (515)
Q Consensus 332 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-------------~~~~---------------~~~~ 383 (515)
...+.+--.....|+..+..| +.|+++.|.+... ++.++|++ ||+. .+|.
T Consensus 169 aAlqvsGyqpllAYniALaHy-~~~qyasALk~iS-EIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNL 246 (459)
T KOG4340|consen 169 AALQVSGYQPLLAYNLALAHY-SSRQYASALKHIS-EIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNL 246 (459)
T ss_pred HHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHH-HHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhh
Confidence 998865445556777666544 6789999999888 77666643 1211 1232
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 010202 384 MITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCR 463 (515)
Q Consensus 384 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 463 (515)
-...+.+.|+++.|.+.+..|.-......|++|...+.-.-. .+++.+.. +-+.-+....+ ...+||..++-.||+
T Consensus 247 KaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~-~KLqFLL~~nP--fP~ETFANlLllyCK 322 (459)
T KOG4340|consen 247 KAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGF-EKLQFLLQQNP--FPPETFANLLLLYCK 322 (459)
T ss_pred hhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccH-HHHHHHHhcCC--CChHHHHHHHHHHhh
Confidence 333456789999999999988655435667778766543222 33344444 33444444223 246789999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHH-HhcCCHHHHHHHHHH
Q 010202 464 ANKCEWAYLLFKEMIGHDIT-PRYQTCRLILDEV-KQKHMYDAAEKIEAV 511 (515)
Q Consensus 464 ~g~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~~~-~~~g~~~~a~~~~~~ 511 (515)
..-++-|-.++.+-....+. .+...| -|+.++ .-.-..+++.+-++.
T Consensus 323 Neyf~lAADvLAEn~~lTyk~L~~Yly-~LLdaLIt~qT~pEea~KKL~~ 371 (459)
T KOG4340|consen 323 NEYFDLAADVLAENAHLTYKFLTPYLY-DLLDALITCQTAPEEAFKKLDG 371 (459)
T ss_pred hHHHhHHHHHHhhCcchhHHHhhHHHH-HHHHHHHhCCCCHHHHHHHHHH
Confidence 99999988887654322111 122223 344444 334455555554443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.2e-08 Score=86.95 Aligned_cols=247 Identities=17% Similarity=0.163 Sum_probs=111.4
Q ss_pred HHHcCCHHHHHHHHHHhhcC-CCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHH
Q 010202 213 LCKEGKVELARSVFLELKSC-IPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKV 291 (515)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 291 (515)
+.-.|++..++.-.+ .... .+.+......+.+++...|+++.++ .++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 334566666654443 2211 1112333444555666666554332 3332222 44555444444333332333444
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhch
Q 010202 292 YELLDEMQAQGCPP-NVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMP 370 (515)
Q Consensus 292 ~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 370 (515)
+.-+++....+..+ +..........+...|++++|++++... .+.......+..|.+.++++.|.+.++ .|.
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~-~~~ 158 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELK-NMQ 158 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHH-HHH
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHH-HHH
Confidence 44333332222221 2222222223344456666666655431 344455555666666666666666666 555
Q ss_pred hCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCC
Q 010202 371 ENGVAPDTSTFNTMITMFSH----HGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHH 446 (515)
Q Consensus 371 ~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 446 (515)
+. ..|. +...+..++.. .+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|. .++.+.....
T Consensus 159 ~~--~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe-~~L~~al~~~- 231 (290)
T PF04733_consen 159 QI--DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAE-ELLEEALEKD- 231 (290)
T ss_dssp CC--SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHH-HHHHHHCCC--
T ss_pred hc--CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHhc-
Confidence 43 2232 22223333322 23466666666666553 2456666666666666666666666 5555554311
Q ss_pred CCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 010202 447 LSLDITTYTLVIHGLCRANKC-EWAYLLFKEMIG 479 (515)
Q Consensus 447 ~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~ 479 (515)
+-++.+...++.+....|+. +.+.+.+.++..
T Consensus 232 -~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 232 -PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp -CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred -cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 11344455555555555555 445556666553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.4e-05 Score=69.47 Aligned_cols=96 Identities=13% Similarity=0.074 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCh-hhHHHHHH
Q 010202 168 LNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEK-NTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNA-HTFNIFIH 245 (515)
Q Consensus 168 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~li~ 245 (515)
..-...+...+...|++..|+.-|....+- .| +-.++-.-...|...|+-..|+.-+.++.+ .+||- ..--.-..
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle-lKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE-LKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh-cCccHHHHHHHhch
Confidence 333445566677777777777777666542 22 222223334456666666666666666432 23332 22222334
Q ss_pred HHHccCChhHHHHHHHHHHhC
Q 010202 246 GWCKINRVDEAQWTIQEMKGH 266 (515)
Q Consensus 246 ~~~~~g~~~~A~~~~~~~~~~ 266 (515)
.+.+.|.+++|..-|+...+.
T Consensus 115 vllK~Gele~A~~DF~~vl~~ 135 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQH 135 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhc
Confidence 566677777777777777665
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.2e-05 Score=72.10 Aligned_cols=368 Identities=13% Similarity=0.137 Sum_probs=222.3
Q ss_pred hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010202 112 DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTF 191 (515)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 191 (515)
++.+.|...|-...... ++|...|+.-...|++.|++++|.+=-.+-.+.+|.-...|.....++.-.|++++|+.-|
T Consensus 16 ~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay 93 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAY 93 (539)
T ss_pred ccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHH
Confidence 68999999999886322 4588899999999999999999999888888878777788999999999999999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH--hhcCCC--------CChhhHHHHHHHHHcc----------C
Q 010202 192 DELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLE--LKSCIP--------PNAHTFNIFIHGWCKI----------N 251 (515)
Q Consensus 192 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~--~~~~~~--------~~~~~~~~li~~~~~~----------g 251 (515)
.+-++.. +-|...++.+..++.... .+.+.|.. +-.+.. .....|..++..+-+. .
T Consensus 94 ~~GL~~d-~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~ 169 (539)
T KOG0548|consen 94 SEGLEKD-PSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDP 169 (539)
T ss_pred HHHhhcC-CchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccH
Confidence 9988753 345667777877772111 01111211 111111 1111222232222111 1
Q ss_pred ChhHHHHHHHHH-----HhCC-------CCc----------------------cHhHHHHHHHHHHhcCChhHHHHHHHH
Q 010202 252 RVDEAQWTIQEM-----KGHG-------CHP----------------------CVISYSTIIQSYCRQYNFSKVYELLDE 297 (515)
Q Consensus 252 ~~~~A~~~~~~~-----~~~~-------~~~----------------------~~~~~~~li~~~~~~g~~~~A~~~~~~ 297 (515)
++..|...+... ...| ..| -..-...+.++..+..+++.|++-+..
T Consensus 170 r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~ 249 (539)
T KOG0548|consen 170 RLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAK 249 (539)
T ss_pred HHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 111121111110 0000 011 011245677777788889999999888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHhhchh
Q 010202 298 MQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPD------SRFFNCLIYTLGRASRVQEAVYVYQVEMPE 371 (515)
Q Consensus 298 m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 371 (515)
..... -+..-++....+|...|.+..+...-....+.|...- ...+..+..+|.+.++++.+...|.+.+.+
T Consensus 250 a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte 327 (539)
T KOG0548|consen 250 ALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTE 327 (539)
T ss_pred HHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhh
Confidence 87764 3555566666778888888777777666665542111 111222334667778888888888733322
Q ss_pred CCCCCCHHH-------------------------HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHh
Q 010202 372 NGVAPDTST-------------------------FNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFK 426 (515)
Q Consensus 372 ~~~~~~~~~-------------------------~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 426 (515)
...|+..+ .-.-...+.+.|++..|+..|.++++.. +-|...|..-..+|.+
T Consensus 328 -~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~--P~Da~lYsNRAac~~k 404 (539)
T KOG0548|consen 328 -HRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD--PEDARLYSNRAACYLK 404 (539)
T ss_pred -hcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHH
Confidence 22232211 1111344566788888888888887764 5566777777778888
Q ss_pred cCChHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010202 427 TGKTDECLSQLLDDMVNKHHLSLD-ITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEV 496 (515)
Q Consensus 427 ~g~~~~A~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 496 (515)
.|.+..|+ .=.+...+ ..|+ ...|.-=..++.-..++++|.+.|.+.++ ..|+..-+..-+.-|
T Consensus 405 L~~~~~aL-~Da~~~ie---L~p~~~kgy~RKg~al~~mk~ydkAleay~eale--~dp~~~e~~~~~~rc 469 (539)
T KOG0548|consen 405 LGEYPEAL-KDAKKCIE---LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE--LDPSNAEAIDGYRRC 469 (539)
T ss_pred HhhHHHHH-HHHHHHHh---cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCchhHHHHHHHHHH
Confidence 88888877 44555444 2333 33343334444455677778888877775 345555444444444
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.3e-05 Score=68.79 Aligned_cols=252 Identities=15% Similarity=0.187 Sum_probs=165.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChh
Q 010202 175 MRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVD 254 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 254 (515)
++-+.-.|.+..++..-...... +-++..-.-+-++|...|..... ..+++.+-.|.......+......-++.+
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~---~~eI~~~~~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIV---ISEIKEGKATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccc---ccccccccCChHHHHHHHHHHhhCcchhH
Confidence 45556667777776655554432 13444444455666666654432 23344333344444444444444444444
Q ss_pred HHH-HHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010202 255 EAQ-WTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKM 333 (515)
Q Consensus 255 ~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 333 (515)
+-. ++.+.+.......+......-...|++.|++++|++...... +......=...+.+..+.+.|.+.+++|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433 344444444333343434444567888999999998887622 2233333345566778889999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 010202 334 KIVGSKPDSRFFNCLIYTLGR----ASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEH 409 (515)
Q Consensus 334 ~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 409 (515)
.+. .+..+.+.|..++.+ .+.+.+|.-+|+ ++.++ ..|+..+.+....++...|++++|..++++.....
T Consensus 164 q~i---ded~tLtQLA~awv~la~ggek~qdAfyife-E~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd- 237 (299)
T KOG3081|consen 164 QQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFE-ELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD- 237 (299)
T ss_pred Hcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHH-HHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-
Confidence 863 355677766666654 567999999999 77653 56899999999999999999999999999999875
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHc
Q 010202 410 CKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNK 444 (515)
Q Consensus 410 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 444 (515)
.-++.+...++-.-...|...++..+.+..+...
T Consensus 238 -~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 238 -AKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred -CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 5667888888888888898888777888887663
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.3e-06 Score=82.75 Aligned_cols=253 Identities=9% Similarity=0.071 Sum_probs=169.1
Q ss_pred HHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 010202 246 GWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEE 325 (515)
Q Consensus 246 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 325 (515)
-+.+.|++.+|.-.|+...... +-+...|..|......+++-..|+..+++.++.. +-|......|.-.|...|.-.+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 3557788888888888877764 3466788888888888888888888888877763 2256677777777777887788
Q ss_pred HHHHHHHHHhcCCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 010202 326 AIRITEKMKIVGSKP--------DSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKA 397 (515)
Q Consensus 326 a~~~~~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 397 (515)
|.+.++.-++...+- +...-.. ..+.....+....++|-......+..+|......|.-.|--.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 888877775543110 0000000 011111223334445542444555456777777787778888889999
Q ss_pred HHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010202 398 FHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLD-ITTYTLVIHGLCRANKCEWAYLLFKE 476 (515)
Q Consensus 398 ~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 476 (515)
.+.|+.+.... +-|...|+.|...++...+.++|+ ..+.+..+ +.|+ +..+-.|.-.|...|.+++|.+.|=+
T Consensus 450 iDcf~~AL~v~--Pnd~~lWNRLGAtLAN~~~s~EAI-sAY~rALq---LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 450 VDCFEAALQVK--PNDYLLWNRLGATLANGNRSEEAI-SAYNRALQ---LQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHhcC--CchHHHHHHhhHHhcCCcccHHHH-HHHHHHHh---cCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 99999888843 344667888888888888888888 88888876 5666 34455567778888999988888766
Q ss_pred HHh---CC------CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010202 477 MIG---HD------ITPRYQTCRLILDEVKQKHMYDAAEKI 508 (515)
Q Consensus 477 m~~---~~------~~p~~~~~~~ll~~~~~~g~~~~a~~~ 508 (515)
.+. .+ -.++..+|.+|-.++.-.++.|.+.++
T Consensus 524 AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 524 ALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 543 21 122345788777777777777755544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.6e-05 Score=82.73 Aligned_cols=336 Identities=13% Similarity=0.040 Sum_probs=209.2
Q ss_pred HHHcCCChHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC------CCC--HHHHHHHHHHH
Q 010202 143 ILGKVRQMDQMRALLEEMSKGH-IVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGL------EKN--TETMNLLLDTL 213 (515)
Q Consensus 143 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~~~--~~~~~~ll~~~ 213 (515)
.+...|+++.+..+++.++... ..++.........+...|++++|..++......-- .+. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677777777776653211 11122223335566778999999999987754210 111 11222334456
Q ss_pred HHcCCHHHHHHHHHHhhcCCCC-C----hhhHHHHHHHHHccCChhHHHHHHHHHHhC----CC-CccHhHHHHHHHHHH
Q 010202 214 CKEGKVELARSVFLELKSCIPP-N----AHTFNIFIHGWCKINRVDEAQWTIQEMKGH----GC-HPCVISYSTIIQSYC 283 (515)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~ 283 (515)
...|+++.|...+++.....+. + ....+.+...+...|++++|...+++.... |- .....++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6789999999999884332222 1 134566677788899999999999887642 11 111234556677788
Q ss_pred hcCChhHHHHHHHHHHH----CCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCC--CHHHHHHHHHHH
Q 010202 284 RQYNFSKVYELLDEMQA----QGCP--P-NVVTYTTVMSYLAKSGDFEEAIRITEKMKIVG--SKP--DSRFFNCLIYTL 352 (515)
Q Consensus 284 ~~g~~~~A~~~~~~m~~----~g~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~--~~~~~~~li~~~ 352 (515)
..|++++|...+++... .+.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 99999999999887654 2221 1 22334455566777899999999998876531 112 233444456677
Q ss_pred HhcCCHHHHHHHHHhhchhCCC-CCCHHHH-----HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCH---HhHHHHHHH
Q 010202 353 GRASRVQEAVYVYQVEMPENGV-APDTSTF-----NTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNV---QTFHPLLKS 423 (515)
Q Consensus 353 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~---~~~~~ll~~ 423 (515)
...|+.++|...+. ....... ......+ ...+..+...|+.+.|.+++....... ..... ..+..+..+
T Consensus 623 ~~~G~~~~A~~~l~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~-~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 623 LARGDLDNARRYLN-RLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPE-FANNHFLQGQWRNIARA 700 (903)
T ss_pred HHcCCHHHHHHHHH-HHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCC-CccchhHHHHHHHHHHH
Confidence 88999999998887 4432100 0111111 112244556899999999987765422 11111 113456667
Q ss_pred HHhcCChHHHHHHHHHHHHHc---CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010202 424 CFKTGKTDECLSQLLDDMVNK---HHLSLD-ITTYTLVIHGLCRANKCEWAYLLFKEMIGHD 481 (515)
Q Consensus 424 ~~~~g~~~~A~~~~~~~~~~~---~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 481 (515)
+...|+.++|. .++++.... .+..++ ..+...+..++.+.|+.++|...+.+..+..
T Consensus 701 ~~~~g~~~~A~-~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 701 QILLGQFDEAE-IILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHcCCHHHHH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88899999998 788877652 232222 3456667788899999999999999998643
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.75 E-value=0.00022 Score=67.43 Aligned_cols=128 Identities=9% Similarity=0.118 Sum_probs=73.3
Q ss_pred CCChhhHHHHHHHhcCCCCH--HHHHHHhhccccCCCCcC-CHHHHHHHHHHh--hhCHHHHHHHHHHhccCCCCCCCHH
Q 010202 61 SPRLPDIDVIISKVHVGSSE--DEVFQSLKQDHVCNAIQP-SHYLVNKLIHRF--KDDWKSALGIFRWAGSCPGYEHSSE 135 (515)
Q Consensus 61 ~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~g~~p-~~~~~~~ll~~~--~~~~~~a~~~~~~~~~~~~~~~~~~ 135 (515)
+-|+.+|+.+|...+..... .+.++++. ++-| ....|..-|..- .++.+....+|..+..+ ..+..
T Consensus 17 P~di~sw~~lire~qt~~~~~~R~~YEq~~------~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk---vLnlD 87 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQPIDKVRETYEQLV------NVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK---VLNLD 87 (656)
T ss_pred CccHHHHHHHHHHHccCCHHHHHHHHHHHh------ccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---HhhHh
Confidence 45899999999876655332 23566664 3334 344455445543 25888888899887522 23577
Q ss_pred HHHHHHHHHHc-CCChHH----HHHHHHHHhcC---C---CCCHHHHHHHHHH------HHhcCCHHHHHHHHHHHhhC
Q 010202 136 IYEMMVDILGK-VRQMDQ----MRALLEEMSKG---H---IVTLNTIAKVMRR------FSGAGQWEDAVRTFDELGTF 197 (515)
Q Consensus 136 ~~~~li~~~~~-~g~~~~----A~~~~~~~~~~---~---~~~~~~~~~li~~------~~~~g~~~~A~~~~~~m~~~ 197 (515)
.|..-++.--+ .|+... ..+.|+-.... + ..-|+.|...+.. |..+.+.+...+++.++...
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 78777765543 233333 22333333221 2 2457777665554 34444556667777777653
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.6e-05 Score=74.27 Aligned_cols=127 Identities=13% Similarity=0.088 Sum_probs=98.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCC-HHhHHHHHH
Q 010202 344 FFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPN-VQTFHPLLK 422 (515)
Q Consensus 344 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~ 422 (515)
.|......+.+.+..++|...+. +.... .......|......+...|..++|.+.|..... +.|+ .....++..
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~-Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~---ldP~hv~s~~Ala~ 726 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLL-EASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA---LDPDHVPSMTALAE 726 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHH-HHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh---cCCCCcHHHHHHHH
Confidence 45566778888888888887776 44332 234566777777888889999999999999888 4465 456788888
Q ss_pred HHHhcCChHHHHHH--HHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010202 423 SCFKTGKTDECLSQ--LLDDMVNKHHLSL-DITTYTLVIHGLCRANKCEWAYLLFKEMIG 479 (515)
Q Consensus 423 ~~~~~g~~~~A~~~--~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 479 (515)
.+.+.|+..-|. . ++.++.+ +.| +...|-.+...+-+.|+.+.|.+.|....+
T Consensus 727 ~lle~G~~~la~-~~~~L~dalr---~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 727 LLLELGSPRLAE-KRSLLSDALR---LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHhCCcchHH-HHHHHHHHHh---hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 889999877766 5 7888877 334 678899999999999999999999988775
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.7e-05 Score=73.32 Aligned_cols=214 Identities=7% Similarity=-0.056 Sum_probs=140.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 010202 137 YEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAG-QWEDAVRTFDELGTFGLEKNTETMNLLLDTLCK 215 (515)
Q Consensus 137 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 215 (515)
+..+-..+...++.++|+.+.+.+.+.++.+.+++......+...| .+++++..++++.+.. +.+..+|+...-.+.+
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~ 118 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHH
Confidence 3334444556677888888888888888877777665555666666 5688888888887754 3355556655545555
Q ss_pred cCCH--HHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhc---CCh--
Q 010202 216 EGKV--ELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQ---YNF-- 288 (515)
Q Consensus 216 ~~~~--~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~-- 288 (515)
.|+. +++...++.+.+..+.|..+|+...-++.+.|+++++++.++++.+.+ +.|...|+.....+.+. |..
T Consensus 119 l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred cCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccc
Confidence 5552 566777767666667788888888888888888888888888888765 33566777666555443 222
Q ss_pred --hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 010202 289 --SKVYELLDEMQAQGCPPNVVTYTTVMSYLAK----SGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGR 354 (515)
Q Consensus 289 --~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 354 (515)
++.+++..++.... +-|...|+.+...+.. .+...+|.+.+.+..+.+ +.+......|++.|+.
T Consensus 198 ~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 198 MRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 35666665665543 3356677766666665 234455777776665543 4456666777777764
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.3e-06 Score=76.52 Aligned_cols=188 Identities=9% Similarity=0.003 Sum_probs=129.5
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC-HHH
Q 010202 131 EHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTL---NTIAKVMRRFSGAGQWEDAVRTFDELGTFGLE-KN-TET 205 (515)
Q Consensus 131 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~-~~~ 205 (515)
...+..+..+...+.+.|++++|...|+++...++.+. .++..+...+.+.|++++|+..++++.+.... +. ..+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 44677888888889999999999999999988766543 56677788999999999999999999875321 11 124
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHH
Q 010202 206 MNLLLDTLCKE--------GKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYST 277 (515)
Q Consensus 206 ~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 277 (515)
+..+..++... |+.+.|.+.++.+....|.+...+..+..... ... .. ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~~~------~~--------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----LRN------RL--------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----HHH------HH--------HHHHHH
Confidence 44455555544 67888888888865555555444433322111 000 00 011224
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010202 278 IIQSYCRQYNFSKVYELLDEMQAQGC--PPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIV 336 (515)
Q Consensus 278 li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 336 (515)
+...|.+.|++++|+..++...+... +.....+..+..++.+.|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55678888999999999998876521 223567888889999999999999988887764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.6e-05 Score=73.79 Aligned_cols=90 Identities=14% Similarity=0.103 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCH----
Q 010202 376 PDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDI---- 451 (515)
Q Consensus 376 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~---- 451 (515)
.|+...+.-...++.+.++++|..++-...+ |...+..|...|-.-. . ++-+.|.-...-.|+.
T Consensus 1078 sDp~ll~RcadFF~~~~qyekAV~lL~~ar~----------~~~AlqlC~~~nv~vt-e-e~aE~mTp~Kd~~~~e~~R~ 1145 (1416)
T KOG3617|consen 1078 SDPKLLRRCADFFENNQQYEKAVNLLCLARE----------FSGALQLCKNRNVRVT-E-EFAELMTPTKDDMPNEQERK 1145 (1416)
T ss_pred CCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----------HHHHHHHHhcCCCchh-H-HHHHhcCcCcCCCccHHHHH
Confidence 3556666666667777777777777665544 3333444443332111 1 3333343322223332
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010202 452 TTYTLVIHGLCRANKCEWAYLLFKEM 477 (515)
Q Consensus 452 ~~~~~li~~~~~~g~~~~A~~~~~~m 477 (515)
.....+...|.++|.+..|-+-|.+.
T Consensus 1146 ~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1146 QVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHhccchHHHHHHHhhh
Confidence 34566777888888888887766555
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.6e-06 Score=81.12 Aligned_cols=238 Identities=15% Similarity=0.180 Sum_probs=150.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHH
Q 010202 201 KNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQ 280 (515)
Q Consensus 201 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 280 (515)
|-...-..+...+.+.|-...|..+|+++. .|.-.|.+|+..|+..+|..+..+..++ +||...|..+.+
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle--------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE--------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD 465 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH--------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence 333334456666777777777777777643 3666777777777777777777776664 577777777777
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 010202 281 SYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQE 360 (515)
Q Consensus 281 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 360 (515)
......-+++|.++.+..... +-..+.....+.++++++.+.++.-.+.. +.-..+|-.+..+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHH
Confidence 766666677777777654322 11111222233677777777777766654 4556677777777777788888
Q ss_pred HHHHHHhhchhCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHH
Q 010202 361 AVYVYQVEMPENGVAPD-TSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLD 439 (515)
Q Consensus 361 A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 439 (515)
|.+.|. .-.. ..|| ...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++|+ +.+.
T Consensus 538 av~aF~-rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn--~~~w~iWENymlvsvdvge~eda~-~A~~ 611 (777)
T KOG1128|consen 538 AVKAFH-RCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN--YQHWQIWENYMLVSVDVGEFEDAI-KAYH 611 (777)
T ss_pred HHHHHH-HHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC--CCCCeeeechhhhhhhcccHHHHH-HHHH
Confidence 877776 3322 2344 4578888888888888888888888877754 333445555666667778888877 7777
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHH
Q 010202 440 DMVNKHHLSLDITTYTLVIHGLC 462 (515)
Q Consensus 440 ~~~~~~~~~p~~~~~~~li~~~~ 462 (515)
++........|..+...++....
T Consensus 612 rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 612 RLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred HHHHhhhhcccchhhHHHHHHHH
Confidence 76653332234444444444433
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.7e-05 Score=72.46 Aligned_cols=317 Identities=15% Similarity=0.187 Sum_probs=177.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 010202 137 YEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKE 216 (515)
Q Consensus 137 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 216 (515)
..+++.++. .++.+|..+|-+- +.....+..|....+|++|+.+-+. .|.+.-...-.+.+.++...
T Consensus 536 vra~lail~--kkfk~ae~ifleq--------n~te~aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l~dt 602 (1636)
T KOG3616|consen 536 VRAMLAILE--KKFKEAEMIFLEQ--------NATEEAIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQALMDT 602 (1636)
T ss_pred HHHHHHHHH--hhhhHHHHHHHhc--------ccHHHHHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHHHhc
Confidence 344444443 3577777777431 1112225667777788888776543 23222223334556666667
Q ss_pred CCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHH
Q 010202 217 GKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLD 296 (515)
Q Consensus 217 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 296 (515)
|+-++|-++-.. +.. --+.|+.|.+.|.+-.|.+....=... ..|......+..++.+..-+++|=.+|+
T Consensus 603 ~qd~ka~elk~s-------dgd-~laaiqlyika~~p~~a~~~a~n~~~l--~~de~il~~ia~alik~elydkagdlfe 672 (1636)
T KOG3616|consen 603 GQDEKAAELKES-------DGD-GLAAIQLYIKAGKPAKAARAALNDEEL--LADEEILEHIAAALIKGELYDKAGDLFE 672 (1636)
T ss_pred Cchhhhhhhccc-------cCc-cHHHHHHHHHcCCchHHHHhhcCHHHh--hccHHHHHHHHHHHHhhHHHHhhhhHHH
Confidence 766665543211 111 124567777777777665543221111 1233333333333333333333333333
Q ss_pred HHHHC----------------------CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 010202 297 EMQAQ----------------------GCPPNVVTY-TTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLG 353 (515)
Q Consensus 297 ~m~~~----------------------g~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 353 (515)
++..- .++..+++. .....-+...|+++.|..-|-+.. ...-.+.+-.
T Consensus 673 ki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai 743 (1636)
T KOG3616|consen 673 KIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAI 743 (1636)
T ss_pred HhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHh
Confidence 33210 011111111 011122233444444444433321 1122344555
Q ss_pred hcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHH
Q 010202 354 RASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDEC 433 (515)
Q Consensus 354 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A 433 (515)
....|.+|..+++ .+.... .-..-|..+...|+..|+++.|.++|.+.- .++-.+..|.+.|+++.|
T Consensus 744 ~akew~kai~ild-niqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 744 GAKEWKKAISILD-NIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred hhhhhhhhHhHHH-Hhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccccHHHH
Confidence 6778888888887 665532 233456777888999999999999887642 244467788899999988
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010202 434 LSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAV 511 (515)
Q Consensus 434 ~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 511 (515)
. ++-.+. .|.......|-+-..-+-+.|++.+|.+++-.. | .|+. .+..|.+.|..++.+++.++
T Consensus 811 ~-kla~e~---~~~e~t~~~yiakaedldehgkf~eaeqlyiti---~-~p~~-----aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 811 F-KLAEEC---HGPEATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EPDK-----AIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred H-HHHHHh---cCchhHHHHHHHhHHhHHhhcchhhhhheeEEc---c-CchH-----HHHHHHhhCcchHHHHHHHH
Confidence 7 666555 344445667777777788889999998888665 3 5664 56778899999998888764
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.1e-06 Score=78.76 Aligned_cols=254 Identities=13% Similarity=0.079 Sum_probs=183.8
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhH
Q 010202 211 DTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSK 290 (515)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 290 (515)
.-+.+.|++.+|.-.|+......|.+...|..|.......++-..|+..+++..+.. +.+....-.|.-.|...|.-.+
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 346688999999999998666678889999999999999999999999999998875 4467778888888999999999
Q ss_pred HHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010202 291 VYELLDEMQAQGCP--------PNVVTYTTVMSYLAKSGDFEEAIRITEKMKI-VGSKPDSRFFNCLIYTLGRASRVQEA 361 (515)
Q Consensus 291 A~~~~~~m~~~g~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A 361 (515)
|++.++.......+ ++..+-.. ..+.....+....++|-++.. .+..+|+.+...|.-.|--.|+++.|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 99999988654211 00000000 111222234455555555544 45458888999999999999999999
Q ss_pred HHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHH-hHHHHHHHHHhcCChHHHHHHHHHH
Q 010202 362 VYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQ-TFHPLLKSCFKTGKTDECLSQLLDD 440 (515)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~ 440 (515)
...|+ ...... +-|..+||.|...++...+.++|+..|.+..+ +.|+.+ ....|.-+|...|.+++|+ ..|-.
T Consensus 450 iDcf~-~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq---LqP~yVR~RyNlgIS~mNlG~ykEA~-~hlL~ 523 (579)
T KOG1125|consen 450 VDCFE-AALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ---LQPGYVRVRYNLGISCMNLGAYKEAV-KHLLE 523 (579)
T ss_pred HHHHH-HHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh---cCCCeeeeehhhhhhhhhhhhHHHHH-HHHHH
Confidence 99999 444321 23678999999999999999999999999999 678743 4555777899999999999 44444
Q ss_pred HHHcCC--------CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010202 441 MVNKHH--------LSLDITTYTLVIHGLCRANKCEWAYLL 473 (515)
Q Consensus 441 ~~~~~~--------~~p~~~~~~~li~~~~~~g~~~~A~~~ 473 (515)
.+.-.. ..++...|.+|=.++.-.++.|-+.+.
T Consensus 524 AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 524 ALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 433111 112345777776667667776655443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.7e-06 Score=72.84 Aligned_cols=127 Identities=11% Similarity=0.049 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 010202 133 SSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDT 212 (515)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 212 (515)
|..+...++....+.|++..|...|.+.....+.+|.+++.+..+|.+.|++++|..-|.+..+.- .-++..++.+.-.
T Consensus 99 d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms 177 (257)
T COG5010 99 DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMS 177 (257)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHH
Confidence 334444444444444444444444444444444444444444444444444444444444444321 1133333444444
Q ss_pred HHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHH
Q 010202 213 LCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTI 260 (515)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 260 (515)
+.-.|+.+.|..++......-+.|..+-..|.......|++++|.++.
T Consensus 178 ~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 178 LLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 444444444444444433332334444444444444444444444443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.8e-08 Score=56.94 Aligned_cols=32 Identities=38% Similarity=0.701 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010202 446 HLSLDITTYTLVIHGLCRANKCEWAYLLFKEM 477 (515)
Q Consensus 446 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 477 (515)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56667777777777777777777777776666
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.2e-05 Score=78.24 Aligned_cols=239 Identities=10% Similarity=0.055 Sum_probs=183.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHH
Q 010202 165 IVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFI 244 (515)
Q Consensus 165 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 244 (515)
++-|..-..+...+...|-...|+.+|+++.. |.-++.+|+..|+..+|..+..+..+ -+|+...|..+.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LG 464 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLG 464 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhh
Confidence 35677777788999999999999999988754 66788899999999999999887444 579999999999
Q ss_pred HHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 010202 245 HGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFE 324 (515)
Q Consensus 245 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 324 (515)
+......-+++|.++++....+ +-..+.....+.+++.++.+.|+.-.+.. +.-..+|-....+..+.+++.
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhH
Confidence 9988888899999998876542 11222223344789999999998866542 234567878888888999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 010202 325 EAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEM 404 (515)
Q Consensus 325 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 404 (515)
.|.+.|....... +.+...||.+-.+|.+.++-.+|...+. +..+.+ .-+...|..-+....+.|.+++|++.+.++
T Consensus 537 ~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~-EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 537 AAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLK-EALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHH-HHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 9999998887653 4456789999999999999999999999 665555 345566777777888999999999999988
Q ss_pred HhCCCCCCCHHhHHHHHHHH
Q 010202 405 NKLEHCKPNVQTFHPLLKSC 424 (515)
Q Consensus 405 ~~~~~~~p~~~~~~~ll~~~ 424 (515)
.......-|......++...
T Consensus 614 l~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 614 LDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHhhhhcccchhhHHHHHHH
Confidence 76432223444444444443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.4e-08 Score=56.65 Aligned_cols=32 Identities=38% Similarity=0.764 Sum_probs=18.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 010202 373 GVAPDTSTFNTMITMFSHHGHHEKAFHVLEEM 404 (515)
Q Consensus 373 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 404 (515)
|+.||..+|+++|.+|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.00016 Score=71.61 Aligned_cols=233 Identities=15% Similarity=0.108 Sum_probs=145.3
Q ss_pred CHHHHHHHHHHh----hhCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhc-----------C
Q 010202 99 SHYLVNKLIHRF----KDDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSK-----------G 163 (515)
Q Consensus 99 ~~~~~~~ll~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~ 163 (515)
|..|-..++.-- .++.+.|.+-.+.+. +..+|..+.+++.+..+++-|.-.+-.|.. .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 566666666532 157777777666664 457899999999999888888777666643 1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHH
Q 010202 164 HIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIF 243 (515)
Q Consensus 164 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 243 (515)
+.. +.-..+.....+.|..++|+.+|++-.+ |..+=..|...|.+++|.++-+.-.+ +. =..+|...
T Consensus 798 ~~~--e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DR-iH-Lr~Tyy~y 864 (1416)
T KOG3617|consen 798 NGE--EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDR-IH-LRNTYYNY 864 (1416)
T ss_pred CCc--chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccc-ee-hhhhHHHH
Confidence 111 2212223445677899999999988876 34455677788999999888654211 11 12355556
Q ss_pred HHHHHccCChhHHHHHHHHHHhCC-------------------CCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 010202 244 IHGWCKINRVDEAQWTIQEMKGHG-------------------CHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCP 304 (515)
Q Consensus 244 i~~~~~~g~~~~A~~~~~~~~~~~-------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 304 (515)
..-+-..++.+.|++.|++..... -..|...|.-....+-..|+.|.|+.+|....+
T Consensus 865 A~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---- 940 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---- 940 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----
Confidence 666667788888888877542110 011223333334444456666666666665542
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010202 305 PNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQ 366 (515)
Q Consensus 305 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 366 (515)
|-+++...|-.|+.++|-++-++ .-|....-.|...|-..|++.+|...|.
T Consensus 941 -----~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 941 -----YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred -----hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 34455555666777777666554 3455555667777777788887777776
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.6e-05 Score=80.22 Aligned_cols=242 Identities=11% Similarity=0.078 Sum_probs=183.0
Q ss_pred HHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCC---HHHHHHHHHHHHhcCCHHHHHHHH
Q 010202 255 EAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQ-GCPPN---VVTYTTVMSYLAKSGDFEEAIRIT 330 (515)
Q Consensus 255 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~---~~~~~~li~~~~~~g~~~~a~~~~ 330 (515)
.|.+.-+..+.. +-+...|-.-|....+.++.++|.++.++.+.. ++.-. ...|.++++.-..-|.-+...++|
T Consensus 1443 saeDferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1443 SAEDFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CHHHHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 344443333332 335677888899999999999999999998764 22211 235666666666677888899999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 010202 331 EKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHC 410 (515)
Q Consensus 331 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 410 (515)
+++.+. ...-.+|..|...|.+.+..++|-++++ .|.++- ......|...+..+.++++-+.|..++.+..+ .
T Consensus 1521 eRAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~-~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~---~ 1593 (1710)
T KOG1070|consen 1521 ERACQY--CDAYTVHLKLLGIYEKSEKNDEADELLR-LMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALK---S 1593 (1710)
T ss_pred HHHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHH-HHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHh---h
Confidence 998875 3345678899999999999999999999 766542 25678899999999999999999999999988 4
Q ss_pred CCCH---HhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 010202 411 KPNV---QTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQ 487 (515)
Q Consensus 411 ~p~~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 487 (515)
-|.. .........-.+.|+.+.+. .+|+.....++-. ...|+.+|+.-.++|+.+.+..+|++....++.|-..
T Consensus 1594 lPk~eHv~~IskfAqLEFk~GDaeRGR-tlfEgll~ayPKR--tDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkm 1670 (1710)
T KOG1070|consen 1594 LPKQEHVEFISKFAQLEFKYGDAERGR-TLFEGLLSAYPKR--TDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKM 1670 (1710)
T ss_pred cchhhhHHHHHHHHHHHhhcCCchhhH-HHHHHHHhhCccc--hhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHh
Confidence 4552 23344455567899999988 9999998865444 4469999999999999999999999999988887653
Q ss_pred --HHHHHHHHHHhcCCHHHHHHH
Q 010202 488 --TCRLILDEVKQKHMYDAAEKI 508 (515)
Q Consensus 488 --~~~~ll~~~~~~g~~~~a~~~ 508 (515)
.|.-.|..=.+.|+-+.++.+
T Consensus 1671 KfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1671 KFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred HHHHHHHHHHHHhcCchhhHHHH
Confidence 556666555677876655443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.6e-05 Score=70.40 Aligned_cols=207 Identities=8% Similarity=0.025 Sum_probs=134.7
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCh-
Q 010202 177 RFSGAGQWEDAVRTFDELGTFGLEK-NTETMNLLLDTLCKEG-KVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRV- 253 (515)
Q Consensus 177 ~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~- 253 (515)
.+...++.++|+.+..++++. .| +..+|+....++...| ++++++..++++....+.+..+|+.....+.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchh
Confidence 445567788888888888874 44 4445665656666666 578888888887666777777888776666666653
Q ss_pred -hHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCH----HH
Q 010202 254 -DEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKS---GDF----EE 325 (515)
Q Consensus 254 -~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~----~~ 325 (515)
+++..+++++.+.. +.+..+|+...-++...|+++++++.++++.+.+.. |..+|+.....+.+. |.. +.
T Consensus 124 ~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 124 ANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHH
Confidence 67788888887765 457788888888888888899999999998887644 566666665555443 222 34
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHh
Q 010202 326 AIRITEKMKIVGSKPDSRFFNCLIYTLGRA----SRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSH 390 (515)
Q Consensus 326 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 390 (515)
..+...+++... +-+...|+.+...+... ++..+|...+. .....+ ..+......|+..|+.
T Consensus 202 el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~-~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 202 ELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCL-EVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHH-Hhhccc-CCcHHHHHHHHHHHHh
Confidence 555555555543 44556666666666552 33445666655 333322 2244455555555553
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.4e-05 Score=75.06 Aligned_cols=383 Identities=10% Similarity=-0.047 Sum_probs=222.8
Q ss_pred CHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010202 113 DWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFD 192 (515)
Q Consensus 113 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 192 (515)
+...++..|....+. .+.-..+|..|...|...-+...|.+.|+..-+-+..+..+-......|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 555566555555321 122346899999999998899999999999999888888888888999999999999999843
Q ss_pred HHhhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCcc
Q 010202 193 ELGTFG-LEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPC 271 (515)
Q Consensus 193 ~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 271 (515)
..-+.. ...-...|..+.-.|.+.++...+...|+...+..|.|...|..+..+|..+|++..|.++|.+.... .|+
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~ 628 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL 628 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH
Confidence 332211 01112233335556778889999999999877777889999999999999999999999999998775 343
Q ss_pred HhHHHH--HHHHHHhcCChhHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHhc
Q 010202 272 VISYST--IIQSYCRQYNFSKVYELLDEMQAQ------GCPPNVVTYTTVMSYLAKSGDF-------EEAIRITEKMKIV 336 (515)
Q Consensus 272 ~~~~~~--li~~~~~~g~~~~A~~~~~~m~~~------g~~~~~~~~~~li~~~~~~g~~-------~~a~~~~~~~~~~ 336 (515)
. +|.. ..-.-+..|++.+|+..+...... +..--..++..+...+.-.|=. +++++.|.-....
T Consensus 629 s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 629 S-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred h-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 2 2222 222345689999999988876542 1111123333333333333322 3333333333222
Q ss_pred CCCCCHHHHHHHHHHH-----------------------HhcCCH---H---HHHHHHHhhchhCCCCCCHHHHHHHHHH
Q 010202 337 GSKPDSRFFNCLIYTL-----------------------GRASRV---Q---EAVYVYQVEMPENGVAPDTSTFNTMITM 387 (515)
Q Consensus 337 ~~~~~~~~~~~li~~~-----------------------~~~g~~---~---~A~~~~~~~~~~~~~~~~~~~~~~li~~ 387 (515)
....+...|-.+-+++ -+.+.. + -+.+.+- .......+..+|..++..
T Consensus 708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~---~hlsl~~~~~~WyNLGin 784 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGI---AHLSLAIHMYPWYNLGIN 784 (1238)
T ss_pred hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhh---HHHHHhhccchHHHHhHH
Confidence 2122222222221111 111111 0 0111111 000111233445555544
Q ss_pred HHh----C----CCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 010202 388 FSH----H----GHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIH 459 (515)
Q Consensus 388 ~~~----~----g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~ 459 (515)
|.+ . .+...|+..+.+.++.. .-+..+|+.|.- ....|++.-|. ..|-+-.. ..+.+..+|..+.-
T Consensus 785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L~--ann~~~WnaLGV-lsg~gnva~aQ-HCfIks~~--sep~~~~~W~Nlgv 858 (1238)
T KOG1127|consen 785 YLRYFLLLGETMKDACTAIRCCKKAVSLC--ANNEGLWNALGV-LSGIGNVACAQ-HCFIKSRF--SEPTCHCQWLNLGV 858 (1238)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHh--hccHHHHHHHHH-hhccchhhhhh-hhhhhhhh--ccccchhheeccce
Confidence 433 1 12346777777777743 344555554443 35556666554 44433322 22335667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010202 460 GLCRANKCEWAYLLFKEMIGHDITPR-YQTCRLILDEVKQKHMYDAAEKIEAV 511 (515)
Q Consensus 460 ~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~ 511 (515)
.+.+..+++-|...|...+. +.|+ ...|-..--.-...|+.-++..+|..
T Consensus 859 L~l~n~d~E~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 859 LVLENQDFEHAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred eEEecccHHHhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 78888888888888888875 4454 44443222222456766666666653
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.63 E-value=7.2e-06 Score=73.35 Aligned_cols=185 Identities=12% Similarity=0.021 Sum_probs=130.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChh---
Q 010202 165 IVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNT---ETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAH--- 238 (515)
Q Consensus 165 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 238 (515)
......+..++..+.+.|++++|...|+++.... +.+. .++..+..++...|++++|...++++.+..|.+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3567777788889999999999999999987753 2222 46677888999999999999999996655444443
Q ss_pred hHHHHHHHHHcc--------CChhHHHHHHHHHHhCCCCccH-hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 010202 239 TFNIFIHGWCKI--------NRVDEAQWTIQEMKGHGCHPCV-ISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVT 309 (515)
Q Consensus 239 ~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 309 (515)
++..+..++.+. |+.++|.+.|+++.... |+. ..+..+..... .... .. ..
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~~------~~--------~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRNR------LA--------GK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHHH------HH--------HH
Confidence 455566666654 77888999998887753 332 22322211110 0000 00 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchh
Q 010202 310 YTTVMSYLAKSGDFEEAIRITEKMKIVGS--KPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPE 371 (515)
Q Consensus 310 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 371 (515)
...+...+.+.|++++|...+....+... +.....+..+..++.+.|++++|...++ .+..
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~-~l~~ 231 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAA-VLGA 231 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH-HHHh
Confidence 12456678999999999999999987632 2345788899999999999999999998 6554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.2e-05 Score=68.90 Aligned_cols=154 Identities=14% Similarity=0.103 Sum_probs=69.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChh
Q 010202 175 MRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVD 254 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 254 (515)
-..+...|+-+.+..+....... ..-|......++....+.|++..|...+.+....-|+|...|+.+.-+|.+.|+++
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~ 151 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFD 151 (257)
T ss_pred HHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChh
Confidence 34444444444444444433221 12233333344444555555555555555544444455555555555555555555
Q ss_pred HHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010202 255 EAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITE 331 (515)
Q Consensus 255 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 331 (515)
+|..-|.+..+.- +-+....|.+.-.+.-.|+.+.|..++......+.. |...-..+.-.....|+++.|.++..
T Consensus 152 ~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 152 EARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 5555555444431 112333444444444445555555555444443211 33334444444444555555544443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.6e-05 Score=77.46 Aligned_cols=56 Identities=11% Similarity=0.122 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010202 309 TYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQ 366 (515)
Q Consensus 309 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 366 (515)
++..+..+|-+.|+.+++..+++++.+.. +-++.+.|.+...|... ++++|..++.
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 44444445555555555555555555443 34444455555555444 5555554444
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.3e-05 Score=68.95 Aligned_cols=119 Identities=11% Similarity=0.056 Sum_probs=65.0
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHH-HccCC--hhHHH
Q 010202 181 AGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGW-CKINR--VDEAQ 257 (515)
Q Consensus 181 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~--~~~A~ 257 (515)
.++.++++..++...+.. +.|...|..+...|...|++++|...|++.....+.+...+..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 344455555555554432 345555666666666666666666666654444455555555555542 44444 35666
Q ss_pred HHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 010202 258 WTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQ 301 (515)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 301 (515)
+++++..+.. +.+..++..+...+.+.|++++|+..|+++.+.
T Consensus 131 ~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666655543 224455555555556666666666666665554
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.8e-05 Score=78.74 Aligned_cols=223 Identities=11% Similarity=0.062 Sum_probs=139.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC-----CCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHH
Q 010202 202 NTETMNLLLDTLCKEGKVELARSVFLELKSCI-----PPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYS 276 (515)
Q Consensus 202 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 276 (515)
....|-..|......++.+.|++++++....+ ..-...|.++++.-..-|.-+...++|+++.+.. -....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 34556666667777777777777777743322 1223456666666666676677777777776642 1244567
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhc
Q 010202 277 TIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSK-PDSRFFNCLIYTLGRA 355 (515)
Q Consensus 277 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~ 355 (515)
.|...|.+.+.+++|.++++.|.+. +.-....|...+..+.+..+-+.|..++.+..+.-.. -......-.+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 7777777777777777777777764 2335567777777777777777777777777664211 1233344445555677
Q ss_pred CCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCH--HhHHHHHHHHHhcCCh
Q 010202 356 SRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNV--QTFHPLLKSCFKTGKT 430 (515)
Q Consensus 356 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~--~~~~~ll~~~~~~g~~ 430 (515)
|+.+.+..+|+ ..... .+.-...|+..|+.-.++|+.+.+..+|++....+ +.|-. ..|...+..=-..|+-
T Consensus 1614 GDaeRGRtlfE-gll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~-l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1614 GDAERGRTLFE-GLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK-LSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred CCchhhHHHHH-HHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC-CChhHhHHHHHHHHHHHHhcCch
Confidence 77777777777 33322 12245577777777777888888888888877766 55542 2344445443444443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00014 Score=73.55 Aligned_cols=149 Identities=15% Similarity=-0.006 Sum_probs=109.0
Q ss_pred CHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHH
Q 010202 113 DWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIV---TLNTIAKVMRRFSGAGQWEDAVR 189 (515)
Q Consensus 113 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~ 189 (515)
+..+|.+-|+.+.... +.|...+..+.+.|++..+++.|..+.-...+..+. .++-. ...-.|.+.++...|+.
T Consensus 507 Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~-~rG~yyLea~n~h~aV~ 583 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWV-QRGPYYLEAHNLHGAVC 583 (1238)
T ss_pred HHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhh-hccccccCccchhhHHH
Confidence 4556777777764211 346778889999999999999999986555554442 12221 14566888899999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHh
Q 010202 190 TFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKG 265 (515)
Q Consensus 190 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 265 (515)
.|+...+.. +.|...|..+..+|.++|++..|.++|.+...-.|.+...-.-..-.-+..|.+.+|...+.....
T Consensus 584 ~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 584 EFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999988864 448889999999999999999999999886544444444444455566778899999888877653
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00091 Score=63.44 Aligned_cols=352 Identities=13% Similarity=0.099 Sum_probs=212.8
Q ss_pred hcCCCCHHHHHHHhhccccCCCCcC-CHHHHHHHHHHhh--hCHHHHHHHHHHhccCCCCCCC-HHHHHHHHHHHHcCCC
Q 010202 74 VHVGSSEDEVFQSLKQDHVCNAIQP-SHYLVNKLIHRFK--DDWKSALGIFRWAGSCPGYEHS-SEIYEMMVDILGKVRQ 149 (515)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~g~~p-~~~~~~~ll~~~~--~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~ 149 (515)
+..++...++---...- .+.| |...|+.-..+++ +++..|+.--.... .+.|+ +..|+-...++.-.|+
T Consensus 13 ~s~~d~~~ai~~~t~ai----~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~---~l~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAI----MLSPTNHVLYSNRSAAYASLGSYEKALKDATKTR---RLNPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred cccccHHHHHHHHHHHH----ccCCCccchhcchHHHHHHHhhHHHHHHHHHHHH---hcCCchhhHHHHhHHHHHhccc
Confidence 45555555542222222 3333 5666666655555 46666665555443 33344 5789999999999999
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH------HHHhhCC---CCCCHHHHHHHHHHHHHc----
Q 010202 150 MDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTF------DELGTFG---LEKNTETMNLLLDTLCKE---- 216 (515)
Q Consensus 150 ~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~------~~m~~~g---~~~~~~~~~~ll~~~~~~---- 216 (515)
+++|+.-|.+-.+.++.+...+..+..++.... ++.+.| ..+.... .......|..++..+-+.
T Consensus 86 ~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred HHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 999999999999999988888877777762110 111111 1111000 000111222222222111
Q ss_pred ------CCHHHHHHHHHHh------hc-------CCCC----------------------ChhhHHHHHHHHHccCChhH
Q 010202 217 ------GKVELARSVFLEL------KS-------CIPP----------------------NAHTFNIFIHGWCKINRVDE 255 (515)
Q Consensus 217 ------~~~~~a~~~~~~~------~~-------~~~~----------------------~~~~~~~li~~~~~~g~~~~ 255 (515)
..+..+...+... .. ...| -..-.-.+.++..+..+++.
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 0111111111110 00 0111 01113456667777788888
Q ss_pred HHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH-------HHHHHHhcCCHHHHHH
Q 010202 256 AQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTT-------VMSYLAKSGDFEEAIR 328 (515)
Q Consensus 256 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-------li~~~~~~g~~~~a~~ 328 (515)
|.+-+....+.. -+..-++....+|...|.+.+++.......+.|.. ...-|+. +..+|.+.++++.++.
T Consensus 243 a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~ 319 (539)
T KOG0548|consen 243 AIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIK 319 (539)
T ss_pred HHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHH
Confidence 888888877764 35555667777888888888887777776665533 2222333 3345666778888888
Q ss_pred HHHHHHhcCCCCCHHHH-------------------------HHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHH
Q 010202 329 ITEKMKIVGSKPDSRFF-------------------------NCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNT 383 (515)
Q Consensus 329 ~~~~~~~~~~~~~~~~~-------------------------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 383 (515)
.|.+.......|+...- ..-...+.+.|++..|...|. ++.... +-|...|..
T Consensus 320 ~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yt-eAIkr~-P~Da~lYsN 397 (539)
T KOG0548|consen 320 YYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYT-EAIKRD-PEDARLYSN 397 (539)
T ss_pred HHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHH-HHHhcC-CchhHHHHH
Confidence 88887654434433221 112345678899999999999 665554 447889999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010202 384 MITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVN 443 (515)
Q Consensus 384 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 443 (515)
-..+|.+.|.+..|++-.+..++.. ++....|.--..++....++++|+ +.|.+..+
T Consensus 398 RAac~~kL~~~~~aL~Da~~~ieL~--p~~~kgy~RKg~al~~mk~ydkAl-eay~eale 454 (539)
T KOG0548|consen 398 RAACYLKLGEYPEALKDAKKCIELD--PNFIKAYLRKGAALRAMKEYDKAL-EAYQEALE 454 (539)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHh
Confidence 9999999999999999988888854 344555666666667777889988 88888766
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.7e-05 Score=77.65 Aligned_cols=203 Identities=13% Similarity=0.128 Sum_probs=144.8
Q ss_pred HHHcCCChHHHHHHHH---HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCC
Q 010202 143 ILGKVRQMDQMRALLE---EMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEK-NTETMNLLLDTLCKEGK 218 (515)
Q Consensus 143 ~~~~~g~~~~A~~~~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~~~ 218 (515)
...+.|.+..+..-+- ...+..+.+..++..|.....+.|.+++|+.+++...+. .| +......+...+.+.++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~ 135 (694)
T PRK15179 58 VLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQG 135 (694)
T ss_pred HHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhcc
Confidence 3344444444433333 334455667888888899999999999999999999885 45 45666778888999999
Q ss_pred HHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 010202 219 VELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEM 298 (515)
Q Consensus 219 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 298 (515)
+++|....++.....|.+......+..++.+.|++++|..+|+++...+ +-+..++..+..++-..|+.++|...|+..
T Consensus 136 ~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 136 IEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999777778888899999999999999999999999998743 334778888888899999999999999988
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCHHHHHHHHHHHHhc
Q 010202 299 QAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIV----GSKPDSRFFNCLIYTLGRA 355 (515)
Q Consensus 299 ~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~ 355 (515)
.+. ..|....|+..+ +++..-...++.+.-. |.+....+...+|.-|.+.
T Consensus 215 ~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 215 LDA-IGDGARKLTRRL------VDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHh-hCcchHHHHHHH------HHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 765 233445555444 3334445555555433 2233334445555555443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.001 Score=63.08 Aligned_cols=130 Identities=9% Similarity=0.055 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 010202 379 STFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKP-NVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLV 457 (515)
Q Consensus 379 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~l 457 (515)
.+|...+..-.+..-.+.|..+|.++.+.+ ..+ +...+++++.-+| .++..-|. ++|+.=.+++|- ++.--...
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~-r~~hhVfVa~A~mEy~c-skD~~~Af-rIFeLGLkkf~d--~p~yv~~Y 441 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDK-RTRHHVFVAAALMEYYC-SKDKETAF-RIFELGLKKFGD--SPEYVLKY 441 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhcc-CCcchhhHHHHHHHHHh-cCChhHHH-HHHHHHHHhcCC--ChHHHHHH
Confidence 456667777777777888999999998877 444 6667777776555 45666777 888877765553 33344567
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010202 458 IHGLCRANKCEWAYLLFKEMIGHDITPRY--QTCRLILDEVKQKHMYDAAEKIEAVMK 513 (515)
Q Consensus 458 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~ 513 (515)
++.+...|+-..|..+|++.+..++.|+. .+|..+|.-=..-|+...+.++-+.+.
T Consensus 442 ldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 442 LDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 78888888888899999998887666654 578888887788888888888877653
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.7e-05 Score=78.51 Aligned_cols=220 Identities=12% Similarity=0.123 Sum_probs=112.9
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---------
Q 010202 132 HSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKN--------- 202 (515)
Q Consensus 132 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--------- 202 (515)
.+...+..|++.|-..+++++|.++.+...+..+.....+..+...+.+.++.+++..+ .+... +..+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-~~~~~~~~~ve~~ 105 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS-FSQNLKWAIVEHI 105 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-cccccchhHHHHH
Confidence 35677888888888888888888888877777776666655555577777776665555 22221 0111
Q ss_pred ----------HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccH
Q 010202 203 ----------TETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCV 272 (515)
Q Consensus 203 ----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 272 (515)
...+-.+..+|-+.|+.+++..+++++..-.+.|+.+.|.+...|+.. ++++|.+++.+....
T Consensus 106 ~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~------ 178 (906)
T PRK14720 106 CDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR------ 178 (906)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH------
Confidence 133344444455555555555555553333344555555555555555 555555555444432
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHH
Q 010202 273 ISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIV-GSKPDSRFFNCLIYT 351 (515)
Q Consensus 273 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~ 351 (515)
+...+++.++.+++.++.... | .+.+.-.++.+.+... |..--..++-.+-..
T Consensus 179 ---------~i~~kq~~~~~e~W~k~~~~~--~---------------~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~ 232 (906)
T PRK14720 179 ---------FIKKKQYVGIEEIWSKLVHYN--S---------------DDFDFFLRIERKVLGHREFTRLVGLLEDLYEP 232 (906)
T ss_pred ---------HHhhhcchHHHHHHHHHHhcC--c---------------ccchHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 223334444444444443321 1 1122222222222221 222223344445555
Q ss_pred HHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHH
Q 010202 352 LGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFS 389 (515)
Q Consensus 352 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 389 (515)
|-..++++++..+++ .+.+.... |.....-++.+|.
T Consensus 233 y~~~~~~~~~i~iLK-~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 233 YKALEDWDEVIYILK-KILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HhhhhhhhHHHHHHH-HHHhcCCc-chhhHHHHHHHHH
Confidence 666666677777766 55443322 4445555555554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=9.7e-06 Score=82.53 Aligned_cols=148 Identities=11% Similarity=0.052 Sum_probs=129.0
Q ss_pred CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 010202 129 GYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNL 208 (515)
Q Consensus 129 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 208 (515)
.++.++..+-.|..+....|.+++|..+++...+..|.+..+...++..+.+.+++++|+..+++..... +-+......
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999999999999999864 346677788
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHH
Q 010202 209 LLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTI 278 (515)
Q Consensus 209 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 278 (515)
+..++...|++++|..+|+++....+.+..++..+...+.+.|+.++|...|++..+.. .+....|+..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~ 228 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR 228 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH
Confidence 88899999999999999999766666778999999999999999999999999987652 2344444443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=8.6e-06 Score=69.95 Aligned_cols=126 Identities=10% Similarity=0.064 Sum_probs=104.9
Q ss_pred cCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH-HHcCC--HHHH
Q 010202 146 KVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTL-CKEGK--VELA 222 (515)
Q Consensus 146 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~-~~~~~--~~~a 222 (515)
..++.+++...++...+.++.+...+..+...|...|++++|+..|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 36777888888888888899999999999999999999999999999998864 34777787777764 66676 5899
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHh
Q 010202 223 RSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVI 273 (515)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 273 (515)
.+++++.....+.+..++..+...+.+.|++++|...++++.+.. +|+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~ 179 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVN 179 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcc
Confidence 999999777778888999999999999999999999999998764 44443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.1e-05 Score=65.52 Aligned_cols=104 Identities=9% Similarity=-0.062 Sum_probs=62.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 010202 137 YEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKE 216 (515)
Q Consensus 137 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 216 (515)
+..+...+...|++++|...|+.....++.+..++..+...+.+.|++++|+..|+...... +.+...+..+..++...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHc
Confidence 33445555666666666666666666666666666666666666666666666666666543 33555666666666666
Q ss_pred CCHHHHHHHHHHhhcCCCCChhhHH
Q 010202 217 GKVELARSVFLELKSCIPPNAHTFN 241 (515)
Q Consensus 217 ~~~~~a~~~~~~~~~~~~~~~~~~~ 241 (515)
|+.++|...|+......|.+...+.
T Consensus 106 g~~~eAi~~~~~Al~~~p~~~~~~~ 130 (144)
T PRK15359 106 GEPGLAREAFQTAIKMSYADASWSE 130 (144)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHH
Confidence 6666666666664433344444443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00019 Score=61.30 Aligned_cols=187 Identities=10% Similarity=0.045 Sum_probs=112.8
Q ss_pred CHHHHHHHHHHhc--cCCC-CCCCH-HHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010202 113 DWKSALGIFRWAG--SCPG-YEHSS-EIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAV 188 (515)
Q Consensus 113 ~~~~a~~~~~~~~--~~~~-~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 188 (515)
++++.++++.++. ...| ..++. .+|..++-+...+|+.+.|...++.+..+.+.+......-.-.+-..|++++|+
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~ 106 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAI 106 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHH
Confidence 4555555555543 1233 34444 335555556666777777777777777666656555443344455567777777
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCC
Q 010202 189 RTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGC 268 (515)
Q Consensus 189 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 268 (515)
++++.+.+.+ +.|..++..=+...-..|+--+|++-+....+.+..|...|.-+...|...|++++|.-.++++.-..
T Consensus 107 e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~- 184 (289)
T KOG3060|consen 107 EYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ- 184 (289)
T ss_pred HHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-
Confidence 7777777765 44666666555556666666667766666555667777777777777777777777777777776542
Q ss_pred CccHhHHHHHHHHHHhcC---ChhHHHHHHHHHHHC
Q 010202 269 HPCVISYSTIIQSYCRQY---NFSKVYELLDEMQAQ 301 (515)
Q Consensus 269 ~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 301 (515)
|.+...+..+...+.-.| +...|.++|.+..+.
T Consensus 185 P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 185 PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 223334444444443333 344566666666554
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.002 Score=61.94 Aligned_cols=354 Identities=14% Similarity=0.103 Sum_probs=192.3
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH--HHHH
Q 010202 135 EIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNL--LLDT 212 (515)
Q Consensus 135 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~--ll~~ 212 (515)
...-+=++.+.+.|++++|.+....+....+.+..++..-+-++.+.+++++|+.+.+.-.. ..+++. +=.+
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKA 86 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKA 86 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHH
Confidence 34445578899999999999999999999888889988888999999999999966544221 112222 2344
Q ss_pred HH--HcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccH------------------
Q 010202 213 LC--KEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCV------------------ 272 (515)
Q Consensus 213 ~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~------------------ 272 (515)
|| +.+..++|...++... +.+..+...-...+.+.|++++|.++|+.+.+.+.. +.
T Consensus 87 Yc~Yrlnk~Dealk~~~~~~---~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d~d~~~r~nl~a~~a~l~~~ 162 (652)
T KOG2376|consen 87 YCEYRLNKLDEALKTLKGLD---RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-DQDEERRANLLAVAAALQVQ 162 (652)
T ss_pred HHHHHcccHHHHHHHHhccc---ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHhhhHH
Confidence 44 6789999999887332 234456777778899999999999999999876521 11
Q ss_pred ----------hHHHHHH---HHHHhcCChhHHHHHHHHHHHCC-------CCCCHH-------HHHHHHHHHHhcCCHHH
Q 010202 273 ----------ISYSTII---QSYCRQYNFSKVYELLDEMQAQG-------CPPNVV-------TYTTVMSYLAKSGDFEE 325 (515)
Q Consensus 273 ----------~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g-------~~~~~~-------~~~~li~~~~~~g~~~~ 325 (515)
.+|..+. ..+...|++.+|+++++...+.+ -.-+.. .-.-+.-.+-..|+.++
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 1222222 23344566666666666652211 010000 11112223445666666
Q ss_pred HHHHHHHHHhcCCCCCHH----HHHHHHHHHHhcCCHH--HHHHHHHhhchhCC----------CCCCHHHHH-HHHHHH
Q 010202 326 AIRITEKMKIVGSKPDSR----FFNCLIYTLGRASRVQ--EAVYVYQVEMPENG----------VAPDTSTFN-TMITMF 388 (515)
Q Consensus 326 a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~--~A~~~~~~~~~~~~----------~~~~~~~~~-~li~~~ 388 (515)
|..++..+++.. .+|.. .-|.|+..- ...++- .+...++ ...... -....+..| .++..|
T Consensus 243 a~~iy~~~i~~~-~~D~~~~Av~~NNLva~~-~d~~~~d~~~l~~k~-~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 243 ASSIYVDIIKRN-PADEPSLAVAVNNLVALS-KDQNYFDGDLLKSKK-SQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred HHHHHHHHHHhc-CCCchHHHHHhcchhhhc-cccccCchHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666654 33321 122222211 111111 1111111 000000 000111111 111111
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHh--cCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 010202 389 SHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFK--TGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANK 466 (515)
Q Consensus 389 ~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~--~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 466 (515)
.+..+.+.++...... ..|.. .+..++..+.+ .....++. .++....+.+... .....-.++......|+
T Consensus 320 --tnk~~q~r~~~a~lp~---~~p~~-~~~~ll~~~t~~~~~~~~ka~-e~L~~~~~~~p~~-s~~v~L~~aQl~is~gn 391 (652)
T KOG2376|consen 320 --TNKMDQVRELSASLPG---MSPES-LFPILLQEATKVREKKHKKAI-ELLLQFADGHPEK-SKVVLLLRAQLKISQGN 391 (652)
T ss_pred --hhhHHHHHHHHHhCCc---cCchH-HHHHHHHHHHHHHHHHHhhhH-HHHHHHhccCCch-hHHHHHHHHHHHHhcCC
Confidence 2333344444333222 23433 33444443322 22456666 6666665522211 23445566777788899
Q ss_pred HHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010202 467 CEWAYLLFK--------EMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAV 511 (515)
Q Consensus 467 ~~~A~~~~~--------~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 511 (515)
++.|.+++. ...+.+..|.. ...++..+.+.++-+.|..+++.
T Consensus 392 ~~~A~~il~~~~~~~~ss~~~~~~~P~~--V~aiv~l~~~~~~~~~a~~vl~~ 442 (652)
T KOG2376|consen 392 PEVALEILSLFLESWKSSILEAKHLPGT--VGAIVALYYKIKDNDSASAVLDS 442 (652)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhccChhH--HHHHHHHHHhccCCccHHHHHHH
Confidence 999999988 55554555554 44456666666666666666554
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00058 Score=58.88 Aligned_cols=81 Identities=19% Similarity=0.171 Sum_probs=38.5
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 010202 282 YCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAK----SGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASR 357 (515)
Q Consensus 282 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 357 (515)
+.+..+.+-|.+.+++|++.. +..|.+-|..++.+ .+.+.+|.-+|++|-+. .+|+..+.+....++...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 334444555555555555431 33444444444332 23345555555555442 24455555555555555555
Q ss_pred HHHHHHHHH
Q 010202 358 VQEAVYVYQ 366 (515)
Q Consensus 358 ~~~A~~~~~ 366 (515)
+++|..+++
T Consensus 223 ~eeAe~lL~ 231 (299)
T KOG3081|consen 223 YEEAESLLE 231 (299)
T ss_pred HHHHHHHHH
Confidence 555555555
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.6e-05 Score=64.54 Aligned_cols=92 Identities=11% Similarity=-0.140 Sum_probs=54.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCh
Q 010202 174 VMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRV 253 (515)
Q Consensus 174 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 253 (515)
+...+.+.|++++|...|+...... +.+...+..+..++...|++++|...|+......|.+...+..+..++.+.|++
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence 3455566666666666666665542 335555566666666666666666666664444555566666666666666666
Q ss_pred hHHHHHHHHHHhC
Q 010202 254 DEAQWTIQEMKGH 266 (515)
Q Consensus 254 ~~A~~~~~~~~~~ 266 (515)
++|...|+.....
T Consensus 109 ~eAi~~~~~Al~~ 121 (144)
T PRK15359 109 GLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666665554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.6e-05 Score=64.11 Aligned_cols=109 Identities=12% Similarity=0.082 Sum_probs=57.0
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC
Q 010202 157 LEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPN 236 (515)
Q Consensus 157 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 236 (515)
|+.....++.+...+..+...+.+.|++++|.+.|+.+...+ +.+...+..+...+...|++++|...++......+.+
T Consensus 6 ~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 6 LKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred HHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 334444444444445555555555555555555555554432 2344555555555555555555555555543334445
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 010202 237 AHTFNIFIHGWCKINRVDEAQWTIQEMKGH 266 (515)
Q Consensus 237 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 266 (515)
...+..+...+...|++++|...|+...+.
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555555555555555555555555555543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.0006 Score=63.99 Aligned_cols=117 Identities=15% Similarity=0.056 Sum_probs=61.5
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhH
Q 010202 176 RRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDE 255 (515)
Q Consensus 176 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 255 (515)
..+...|.+++|+..++.+... .+-|+.........+.+.|+.++|.+.++.+....|.....+-.+..+|.+.|++.+
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 3444455555555555555543 123444444455555555555555555555444444444555555555555555555
Q ss_pred HHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHH
Q 010202 256 AQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYEL 294 (515)
Q Consensus 256 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 294 (515)
|..+++...... +-|...|..|..+|...|+..++...
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A 430 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLA 430 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHH
Confidence 555555554432 33555555555555555555555433
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00038 Score=65.28 Aligned_cols=139 Identities=18% Similarity=0.115 Sum_probs=75.1
Q ss_pred HHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHH
Q 010202 246 GWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPN-VVTYTTVMSYLAKSGDFE 324 (515)
Q Consensus 246 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~ 324 (515)
.+...|++++|+..++.+...- +-|...+......+...++.++|.+.++.+... .|+ ....-.+..++.+.|++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 3444566666666666655441 223444444455556666666666666665554 333 334444555566666666
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 010202 325 EAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEM 404 (515)
Q Consensus 325 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 404 (515)
+|+.+++...... +.|+..|..|..+|...|+..++..-.. .+|...|++++|...+...
T Consensus 392 eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A-------------------E~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 392 EAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA-------------------EGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred HHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH-------------------HHHHhCCCHHHHHHHHHHH
Confidence 6666666555543 4555566666666666666555544443 1233455666666666555
Q ss_pred HhC
Q 010202 405 NKL 407 (515)
Q Consensus 405 ~~~ 407 (515)
.+.
T Consensus 452 ~~~ 454 (484)
T COG4783 452 SQQ 454 (484)
T ss_pred HHh
Confidence 553
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00079 Score=57.65 Aligned_cols=185 Identities=15% Similarity=0.064 Sum_probs=113.9
Q ss_pred ChHHHHHHHHHHhc------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 010202 149 QMDQMRALLEEMSK------GHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELA 222 (515)
Q Consensus 149 ~~~~A~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a 222 (515)
+.++..+++.++.. -+..-|..+..++-+....|+.+.|...++.+... ++-+...-..-.-.+-..|++++|
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhH
Confidence 44555555555532 12345666666677777777777888777777664 222222222122234456777778
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 010202 223 RSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQG 302 (515)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 302 (515)
.++++.+....|.|..++---+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-..
T Consensus 106 ~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~ 184 (289)
T KOG3060|consen 106 IEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ 184 (289)
T ss_pred HHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC
Confidence 88887766666777777776666666667766777766666654 34577778778788887888888777777776542
Q ss_pred CCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhc
Q 010202 303 CPPNVVTYTTVMSYLAKSG---DFEEAIRITEKMKIV 336 (515)
Q Consensus 303 ~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~ 336 (515)
+.+.-.+..+...+.-.| +...+.+.|.+..+.
T Consensus 185 -P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 185 -PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred -CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 223444444544444333 455667777776654
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.2e-05 Score=61.61 Aligned_cols=97 Identities=14% Similarity=0.030 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHH
Q 010202 204 ETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYC 283 (515)
Q Consensus 204 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 283 (515)
.....+...+...|++++|.+.++.+....+.+...+..+...+.+.|++++|...+++..+.+ +.+...+..+...+.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 3444555556666666666666666544445556666666666666666666666666655543 334555555566666
Q ss_pred hcCChhHHHHHHHHHHHC
Q 010202 284 RQYNFSKVYELLDEMQAQ 301 (515)
Q Consensus 284 ~~g~~~~A~~~~~~m~~~ 301 (515)
..|++++|++.|+...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666665554
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0084 Score=60.64 Aligned_cols=205 Identities=8% Similarity=0.026 Sum_probs=121.7
Q ss_pred CCcCCHHHHHHHHHHhhhCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHH
Q 010202 95 AIQPSHYLVNKLIHRFKDDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKV 174 (515)
Q Consensus 95 g~~p~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 174 (515)
+-.|-...+.++...-.+..++|..+++...... ..|..+...+-..|.+.|+.++|..+++.....+|. ..-+..+
T Consensus 40 Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~l 116 (932)
T KOG2053|consen 40 PNALYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHL 116 (932)
T ss_pred CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHH
Confidence 3333333333333333456667777777653222 237888888888888889999999999888887777 6666677
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-C---------HHHHHHHHHHh-hcC-CCCChhhHHH
Q 010202 175 MRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEG-K---------VELARSVFLEL-KSC-IPPNAHTFNI 242 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~-~---------~~~a~~~~~~~-~~~-~~~~~~~~~~ 242 (515)
..+|++.+.+.+-.+.=-++.+. ++-+...+=+++......- . ...|.+.++.+ ..+ -..+..-...
T Consensus 117 FmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~L 195 (932)
T KOG2053|consen 117 FMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIIL 195 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHH
Confidence 78888888776543333333331 2334444444555444321 1 23455555553 222 1112222223
Q ss_pred HHHHHHccCChhHHHHHH-HHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 010202 243 FIHGWCKINRVDEAQWTI-QEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGC 303 (515)
Q Consensus 243 li~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 303 (515)
-...+...|++++|++++ ....+.-...+...-+.-+..+...++|.+..++-.++...|.
T Consensus 196 yl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 196 YLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 334555678888888888 3444433333444455667778888888888888888887753
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00016 Score=58.94 Aligned_cols=125 Identities=14% Similarity=0.131 Sum_probs=72.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHH
Q 010202 136 IYEMMVDILGKVRQMDQMRALLEEMSKGHIVT---LNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKN--TETMNLLL 210 (515)
Q Consensus 136 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~ll 210 (515)
.|..++..+. .++...+...++.+...++.+ ..+...+...+...|++++|...|+........|+ ......+.
T Consensus 14 ~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQALQ-AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 4444555553 667777777777776665544 23333455666777777777777777766542222 12333455
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHH
Q 010202 211 DTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQE 262 (515)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 262 (515)
..+...|++++|+..++.+.. .+.....+....+.|.+.|++++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~-~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPD-EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccC-cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666777777766655322 223344555566666666666666666654
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.14 E-value=9.2e-05 Score=69.88 Aligned_cols=121 Identities=17% Similarity=0.208 Sum_probs=56.1
Q ss_pred HHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 010202 139 MMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGK 218 (515)
Q Consensus 139 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 218 (515)
.|+..+...++++.|..+|+++.+.++. ....+++.+...++-.+|++++.+..+.. +.+...+......+.+.++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 3444444445555555555555544422 11223444444455555555555544331 2234444444444445555
Q ss_pred HHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHH
Q 010202 219 VELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEM 263 (515)
Q Consensus 219 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 263 (515)
.+.|+++.++.....|.+-.+|..|..+|.+.|++++|+..++.+
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 555555555444334444445555555555555555555444444
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.12 E-value=5.4e-06 Score=48.68 Aligned_cols=34 Identities=47% Similarity=0.782 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 010202 453 TYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRY 486 (515)
Q Consensus 453 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 486 (515)
+|+++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6899999999999999999999999999998873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.015 Score=58.96 Aligned_cols=222 Identities=14% Similarity=0.094 Sum_probs=161.3
Q ss_pred hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010202 112 DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTF 191 (515)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 191 (515)
+++..|+.....+.++++-.+-..++.++. +.+.|+.++|..+++........+..++..+-.+|...++.++|..+|
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHH
Confidence 478889999998876665444444444443 467899999999999887766678888888899999999999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCC----------hhHHHHHHH
Q 010202 192 DELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINR----------VDEAQWTIQ 261 (515)
Q Consensus 192 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~ 261 (515)
++.... -|+......+..+|.+.+++.+-.++--++.+.+|.+...+-++++.+.+.-. ..-|.+.++
T Consensus 101 e~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~ 178 (932)
T KOG2053|consen 101 ERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQ 178 (932)
T ss_pred HHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHH
Confidence 999874 67788888889999999988776666555656677788777777777765421 224556666
Q ss_pred HHHhCC-CCccHhHHHHHHHHHHhcCChhHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010202 262 EMKGHG-CHPCVISYSTIIQSYCRQYNFSKVYELLD-EMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVG 337 (515)
Q Consensus 262 ~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 337 (515)
.+.+.+ -.-+..-...-...+...|++++|++++. ...+.-...+...-+.-+..+...+++.+..++-.++...|
T Consensus 179 ~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 179 KLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 666553 11122222222344556889999999994 34443334455555667788889999999999999999886
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.5e-06 Score=48.63 Aligned_cols=33 Identities=30% Similarity=0.661 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 010202 274 SYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPN 306 (515)
Q Consensus 274 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 306 (515)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00028 Score=57.48 Aligned_cols=22 Identities=14% Similarity=0.140 Sum_probs=10.0
Q ss_pred HHHHccCChhHHHHHHHHHHhC
Q 010202 245 HGWCKINRVDEAQWTIQEMKGH 266 (515)
Q Consensus 245 ~~~~~~g~~~~A~~~~~~~~~~ 266 (515)
..+...|++++|...|+.....
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~ 77 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALAN 77 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhh
Confidence 3444444444444444444443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.05 E-value=8e-06 Score=47.54 Aligned_cols=33 Identities=27% Similarity=0.459 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 010202 452 TTYTLVIHGLCRANKCEWAYLLFKEMIGHDITP 484 (515)
Q Consensus 452 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 484 (515)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888776
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00023 Score=67.24 Aligned_cols=126 Identities=10% Similarity=0.088 Sum_probs=94.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc
Q 010202 170 TIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCK 249 (515)
Q Consensus 170 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 249 (515)
....++..+...++++.|+++|+++.+.. |+. ...+++.+...++-.+|.+++.+.....|.+..........+.+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 34456777777888899999998888753 543 34477777777888888888888555566677777777788888
Q ss_pred cCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010202 250 INRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQA 300 (515)
Q Consensus 250 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 300 (515)
.++++.|+.+.+++.... +-+-.+|..|..+|.+.|+++.|+-.++.+.-
T Consensus 247 k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred cCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 888888888888888763 22445888888888888888888888776653
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.1e-05 Score=46.90 Aligned_cols=31 Identities=23% Similarity=0.502 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 010202 274 SYSTIIQSYCRQYNFSKVYELLDEMQAQGCP 304 (515)
Q Consensus 274 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 304 (515)
+|+.++.+|++.|+++.|.++|++|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0055 Score=54.53 Aligned_cols=184 Identities=9% Similarity=0.026 Sum_probs=103.8
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 010202 133 SSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNT---IAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLL 209 (515)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 209 (515)
++..+-.....+.+.|++++|.+.|+++....+.+..+ ...++.++.+.+++++|...|++..+....-....+...
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 44444445555667899999999999998877754433 356778889999999999999998875322222233333
Q ss_pred HHHHHH--cC---------------CHH---HHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCC
Q 010202 210 LDTLCK--EG---------------KVE---LARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCH 269 (515)
Q Consensus 210 l~~~~~--~~---------------~~~---~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 269 (515)
+.+.+. .+ +.. .|...|+. ++.-|=...-..+|...+..+...
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~--------------li~~yP~S~ya~~A~~rl~~l~~~--- 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSK--------------LVRGYPNSQYTTDATKRLVFLKDR--- 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHH--------------HHHHCcCChhHHHHHHHHHHHHHH---
Confidence 333321 11 111 22233333 222222233344444444444321
Q ss_pred ccHhHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010202 270 PCVISYSTIIQSYCRQYNFSKVYELLDEMQAQ--GCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMK 334 (515)
Q Consensus 270 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 334 (515)
=...--.+...|.+.|.+..|+.-++.+.+. +.+....+...++.+|.+.|..++|.++...+.
T Consensus 174 -la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 -LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred -HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0111123455677777777777777777653 223344556666777777777777776665543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00026 Score=55.44 Aligned_cols=104 Identities=14% Similarity=0.098 Sum_probs=57.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CCHHHHHHHH
Q 010202 136 IYEMMVDILGKVRQMDQMRALLEEMSKGHIVT---LNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLE--KNTETMNLLL 210 (515)
Q Consensus 136 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~ll 210 (515)
++..++..+.+.|++++|.+.|+.+...++.+ ..+...+...+.+.|++++|.+.|+.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 44455555666666666666666665544322 344445566666666666666666666543211 1133455555
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCCChhh
Q 010202 211 DTLCKEGKVELARSVFLELKSCIPPNAHT 239 (515)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 239 (515)
.++...|+.++|.+.++++....|.+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 55666666666666666654444444433
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00016 Score=65.94 Aligned_cols=131 Identities=13% Similarity=0.115 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 010202 135 EIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSG-AGQWEDAVRTFDELGTFGLEKNTETMNLLLDTL 213 (515)
Q Consensus 135 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 213 (515)
.+|..+++..-+.+..+.|+.+|.+..+....++..|...+..-.+ .++.+.|.++|+...+. +..+...|...++.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 4677777777777778888888888876666677777665555333 56666688888887765 455677777777888
Q ss_pred HHcCCHHHHHHHHHHhhcCCCCCh---hhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 010202 214 CKEGKVELARSVFLELKSCIPPNA---HTFNIFIHGWCKINRVDEAQWTIQEMKGH 266 (515)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 266 (515)
...|+.+.|..+|++....++++. ..|...+..=.+.|+++.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888554444433 46777777777777777777777777653
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00018 Score=68.19 Aligned_cols=120 Identities=14% Similarity=0.083 Sum_probs=64.8
Q ss_pred CccHhHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 010202 269 HPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQ--GCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFN 346 (515)
Q Consensus 269 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 346 (515)
+.+......+++.+....+.+.+..++.+.... ....-..|..++++.|.+.|..+.+..+++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 344555555555555555566666666555543 111122344466666666666666666666666666666666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHH
Q 010202 347 CLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFS 389 (515)
Q Consensus 347 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 389 (515)
.|++.+.+.|++..|.++.. .|...+...+..|+...+.+|.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~-~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVAT-EMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHHhhcccHHHHHHHHH-HHHHhhccCCchHHHHHHHHHH
Confidence 66666666666666666665 4433333344444444443333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00026 Score=52.44 Aligned_cols=89 Identities=15% Similarity=0.154 Sum_probs=40.6
Q ss_pred HHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 010202 139 MMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGK 218 (515)
Q Consensus 139 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 218 (515)
.+...+...|++++|...|+.+.+..+.+...+..+...+...|++++|.+.|+...+.. +.+..++..+...+...|+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 334444445555555555555544444444444444444444555555555554444432 2222334444444444444
Q ss_pred HHHHHHHHHH
Q 010202 219 VELARSVFLE 228 (515)
Q Consensus 219 ~~~a~~~~~~ 228 (515)
.+.|...+..
T Consensus 84 ~~~a~~~~~~ 93 (100)
T cd00189 84 YEEALEAYEK 93 (100)
T ss_pred HHHHHHHHHH
Confidence 4444444443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00021 Score=67.84 Aligned_cols=102 Identities=13% Similarity=0.170 Sum_probs=47.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhC--CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHh
Q 010202 339 KPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPEN--GVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQT 416 (515)
Q Consensus 339 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~ 416 (515)
+.+......+++.+....+.+.+..++. ..... ....-..|..++|+.|...|..+++++++..=...| +-||..+
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~-k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yG-iF~D~~s 140 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLY-KFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYG-IFPDNFS 140 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHH-HHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcc-cCCChhh
Confidence 3444444444554444444555544444 22221 111112233455555555555555555555555555 5555555
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010202 417 FHPLLKSCFKTGKTDECLSQLLDDMVN 443 (515)
Q Consensus 417 ~~~ll~~~~~~g~~~~A~~~~~~~~~~ 443 (515)
++.|++.+.+.|++..|. ++...|..
T Consensus 141 ~n~Lmd~fl~~~~~~~A~-~V~~~~~l 166 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAA-KVATEMML 166 (429)
T ss_pred HHHHHHHHhhcccHHHHH-HHHHHHHH
Confidence 555555555555555555 44444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0029 Score=58.08 Aligned_cols=18 Identities=11% Similarity=0.198 Sum_probs=8.6
Q ss_pred HHHhcCChhHHHHHHHHH
Q 010202 281 SYCRQYNFSKVYELLDEM 298 (515)
Q Consensus 281 ~~~~~g~~~~A~~~~~~m 298 (515)
.|-..|++++|.+.|.+.
T Consensus 44 ~fk~~~~~~~A~~ay~kA 61 (282)
T PF14938_consen 44 CFKLAKDWEKAAEAYEKA 61 (282)
T ss_dssp HHHHTT-CHHHHHHHHHH
T ss_pred HHHHHhccchhHHHHHHH
Confidence 344455555555555443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.76 E-value=3.7e-05 Score=43.54 Aligned_cols=27 Identities=33% Similarity=0.824 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC
Q 010202 275 YSTIIQSYCRQYNFSKVYELLDEMQAQ 301 (515)
Q Consensus 275 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 301 (515)
|+.++++|++.|++++|.++|++|.+.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 444444444444444444444444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00051 Score=50.83 Aligned_cols=91 Identities=16% Similarity=0.205 Sum_probs=48.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCh
Q 010202 174 VMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRV 253 (515)
Q Consensus 174 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 253 (515)
+...+...|++++|+..+++..+.. +.+...+..+...+...+++++|.+.++......+.+..++..+...+...|++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 3455555666666666666655432 223344455555555556666666665554333344444555555555555555
Q ss_pred hHHHHHHHHHHh
Q 010202 254 DEAQWTIQEMKG 265 (515)
Q Consensus 254 ~~A~~~~~~~~~ 265 (515)
++|...+....+
T Consensus 85 ~~a~~~~~~~~~ 96 (100)
T cd00189 85 EEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHc
Confidence 555555555443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00064 Score=59.87 Aligned_cols=102 Identities=13% Similarity=0.143 Sum_probs=70.9
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcC
Q 010202 387 MFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLD-ITTYTLVIHGLCRAN 465 (515)
Q Consensus 387 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g 465 (515)
-+.+.+++++|+..|.+.++.. +-|.+-|..-..+|++.|.++.|+ +-.+..+. +.|. ...|..|..+|...|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AV-kDce~Al~---iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAV-KDCESALS---IDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHH-HHHHHHHh---cChHHHHHHHHHHHHHHccC
Confidence 3456677888888888887743 344556666677788888888877 55555544 3443 557777778888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010202 466 KCEWAYLLFKEMIGHDITPRYQTCRLILDEV 496 (515)
Q Consensus 466 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 496 (515)
++++|++.|++.++ +.|+..+|..=|...
T Consensus 164 k~~~A~~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 164 KYEEAIEAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred cHHHHHHHHHhhhc--cCCCcHHHHHHHHHH
Confidence 88888888887775 677777777666654
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00093 Score=49.65 Aligned_cols=75 Identities=19% Similarity=0.344 Sum_probs=39.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 010202 278 IIQSYCRQYNFSKVYELLDEMQAQGC-PPNVVTYTTVMSYLAKSG--------DFEEAIRITEKMKIVGSKPDSRFFNCL 348 (515)
Q Consensus 278 li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~~l 348 (515)
.|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444445666666666666666666 566666666665555422 122344455555555555555555555
Q ss_pred HHHH
Q 010202 349 IYTL 352 (515)
Q Consensus 349 i~~~ 352 (515)
+..+
T Consensus 111 l~~L 114 (120)
T PF08579_consen 111 LGSL 114 (120)
T ss_pred HHHH
Confidence 5444
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0016 Score=50.88 Aligned_cols=96 Identities=10% Similarity=-0.103 Sum_probs=42.1
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCCC--CccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHH
Q 010202 241 NIFIHGWCKINRVDEAQWTIQEMKGHGC--HPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCP--PNVVTYTTVMSY 316 (515)
Q Consensus 241 ~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~li~~ 316 (515)
..++..+.+.|++++|.+.|+.+..... +.....+..+...+.+.|++++|.+.|+.+...... ....++..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3344444445555555555555443210 001223334444555555555555555554432111 112334444444
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 010202 317 LAKSGDFEEAIRITEKMKIV 336 (515)
Q Consensus 317 ~~~~g~~~~a~~~~~~~~~~ 336 (515)
+.+.|+.++|.+.++++.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 45555555555555555444
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.70 E-value=5.5e-05 Score=42.81 Aligned_cols=30 Identities=37% Similarity=0.591 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 010202 453 TYTLVIHGLCRANKCEWAYLLFKEMIGHDI 482 (515)
Q Consensus 453 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 482 (515)
+|+.++++|++.|++++|.+++++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 688888888888888888888888877653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00096 Score=49.59 Aligned_cols=78 Identities=19% Similarity=0.280 Sum_probs=63.3
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhCCC-CccHhHHHHHHHHHHhcC--------ChhHHHHHHHHHHHCCCCCCHHHHHH
Q 010202 242 IFIHGWCKINRVDEAQWTIQEMKGHGC-HPCVISYSTIIQSYCRQY--------NFSKVYELLDEMQAQGCPPNVVTYTT 312 (515)
Q Consensus 242 ~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~~~~~~~~~ 312 (515)
..|.-+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. +.-+.+.+|+.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 345555566889999999999999998 889999999988877643 24467888999999999999999999
Q ss_pred HHHHHHh
Q 010202 313 VMSYLAK 319 (515)
Q Consensus 313 li~~~~~ 319 (515)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 9988765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.021 Score=52.46 Aligned_cols=124 Identities=14% Similarity=0.133 Sum_probs=54.3
Q ss_pred HHHHHHcc-CChhHHHHHHHHHHhC----CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-----CCHH-HH
Q 010202 243 FIHGWCKI-NRVDEAQWTIQEMKGH----GCHP-CVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCP-----PNVV-TY 310 (515)
Q Consensus 243 li~~~~~~-g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----~~~~-~~ 310 (515)
+...|.+. |++++|.+.|++..+. |-+. -...+..+...+.+.|++++|+++|++....-.. .+.. .|
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 33445555 6666666666655331 1000 1223445555666666666666666665543211 1111 12
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCC--HHHHHHHHHHHHh--cCCHHHHHHHHH
Q 010202 311 TTVMSYLAKSGDFEEAIRITEKMKIV--GSKPD--SRFFNCLIYTLGR--ASRVQEAVYVYQ 366 (515)
Q Consensus 311 ~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~--~~~~~~li~~~~~--~g~~~~A~~~~~ 366 (515)
...+-.+...||+..|.+.+++.... ++..+ ......|+.+|-. ...+++++.-|+
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d 261 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYD 261 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHc
Confidence 22223444456666666666665533 11111 2334444454432 233555555554
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.06 Score=50.57 Aligned_cols=138 Identities=10% Similarity=0.062 Sum_probs=88.1
Q ss_pred hCHHHHHHHHHHhccCCC---CCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010202 112 DDWKSALGIFRWAGSCPG---YEHS-SEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDA 187 (515)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~---~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 187 (515)
++..++..+|..+..... +... ....+-++++|.- .+.+.....+.+..+..+.+.-...-..-.+.+.+.+++|
T Consensus 20 ~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~ka 98 (549)
T PF07079_consen 20 KKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKA 98 (549)
T ss_pred hhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHH
Confidence 477889999988853221 1112 2334567777764 4677777777777665553322221123344578889999
Q ss_pred HHHHHHHhhC--CCCC---CHHH---------HHHHHHHHHHcCCHHHHHHHHHHhhc-----CCCCChhhHHHHHHHHH
Q 010202 188 VRTFDELGTF--GLEK---NTET---------MNLLLDTLCKEGKVELARSVFLELKS-----CIPPNAHTFNIFIHGWC 248 (515)
Q Consensus 188 ~~~~~~m~~~--g~~~---~~~~---------~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~li~~~~ 248 (515)
++.+....+. +-.| |... =+..+..+.+.|.+.+++.+++++.. ...-+..+|+.++-++.
T Consensus 99 l~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmls 178 (549)
T PF07079_consen 99 LQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLS 178 (549)
T ss_pred HHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHh
Confidence 9988777654 3232 1111 15567788899999999999988543 34478999999777776
Q ss_pred cc
Q 010202 249 KI 250 (515)
Q Consensus 249 ~~ 250 (515)
+.
T Consensus 179 rS 180 (549)
T PF07079_consen 179 RS 180 (549)
T ss_pred HH
Confidence 53
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0021 Score=61.03 Aligned_cols=97 Identities=9% Similarity=-0.059 Sum_probs=61.6
Q ss_pred HHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 010202 142 DILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVEL 221 (515)
Q Consensus 142 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 221 (515)
..+...|++++|++.|++..+.++.+...+..+..+|.+.|++++|+..++++.+.. +.+...|..+..+|...|++++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 344556677777777777776666666666666667777777777777777766643 2355566666666677777777
Q ss_pred HHHHHHHhhcCCCCChhh
Q 010202 222 ARSVFLELKSCIPPNAHT 239 (515)
Q Consensus 222 a~~~~~~~~~~~~~~~~~ 239 (515)
|+..|++.....+.+...
T Consensus 89 A~~~~~~al~l~P~~~~~ 106 (356)
T PLN03088 89 AKAALEKGASLAPGDSRF 106 (356)
T ss_pred HHHHHHHHHHhCCCCHHH
Confidence 777776644433334333
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0039 Score=48.18 Aligned_cols=105 Identities=20% Similarity=0.192 Sum_probs=63.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC---ChhhHHHHHHHHH
Q 010202 174 VMRRFSGAGQWEDAVRTFDELGTFGLEKN--TETMNLLLDTLCKEGKVELARSVFLELKSCIPP---NAHTFNIFIHGWC 248 (515)
Q Consensus 174 li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~li~~~~ 248 (515)
+...+-..|+.++|+.+|++....|.... ...+..+...+...|++++|..++++.....|. +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 35566677778888888877777765443 334555666777777777777777774443333 3333344445666
Q ss_pred ccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHH
Q 010202 249 KINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSY 282 (515)
Q Consensus 249 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 282 (515)
..|+.++|.+.+-.... ++...|.--|..|
T Consensus 87 ~~gr~~eAl~~~l~~la----~~~~~y~ra~~~y 116 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA----ETLPRYRRAIRFY 116 (120)
T ss_pred HCCCHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 77777777777665543 2333444444444
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0013 Score=60.19 Aligned_cols=129 Identities=11% Similarity=0.044 Sum_probs=73.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc
Q 010202 171 IAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDT-LCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCK 249 (515)
Q Consensus 171 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 249 (515)
+..+++...+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+.++.+...|...++.+.+
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 3444566666666777777777776542 2233344433333 2224555557777777544566677777777777777
Q ss_pred cCChhHHHHHHHHHHhCCCCccH---hHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 010202 250 INRVDEAQWTIQEMKGHGCHPCV---ISYSTIIQSYCRQYNFSKVYELLDEMQAQ 301 (515)
Q Consensus 250 ~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 301 (515)
.|+.+.|..+|++.... +.++. ..|...+..=.+.|+.+.+.++.+++.+.
T Consensus 83 ~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 83 LNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp TT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777776654 22222 35666666666666666666666665553
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00014 Score=52.80 Aligned_cols=79 Identities=13% Similarity=0.169 Sum_probs=31.4
Q ss_pred CChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 010202 428 GKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRY-QTCRLILDEVKQKHMYDAAE 506 (515)
Q Consensus 428 g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~ 506 (515)
|+++.|+ .+++++.+..+..++...+-.+..++.+.|++++|.+++++ . +..|+. .....+..++.+.|++++|+
T Consensus 3 ~~y~~Ai-~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~--~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 3 GNYENAI-KYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L--KLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp T-HHHHH-HHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H--THHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHH-HHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h--CCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4444444 44444444221111222333344555555555555555544 1 122222 22222233344555555555
Q ss_pred HHHH
Q 010202 507 KIEA 510 (515)
Q Consensus 507 ~~~~ 510 (515)
+.++
T Consensus 79 ~~l~ 82 (84)
T PF12895_consen 79 KALE 82 (84)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5444
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0028 Score=50.88 Aligned_cols=89 Identities=9% Similarity=-0.045 Sum_probs=42.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChh
Q 010202 175 MRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVD 254 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 254 (515)
...+.+.|++++|.++|+.+.... +-+..-|-.|.-++-..|++++|+..|...-.-.+.|+..+..+..++...|+.+
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~ 120 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVC 120 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHH
Confidence 344444555555555555544432 1233334444444445555555555555533323444555555555555555555
Q ss_pred HHHHHHHHHH
Q 010202 255 EAQWTIQEMK 264 (515)
Q Consensus 255 ~A~~~~~~~~ 264 (515)
.|.+-|+...
T Consensus 121 ~A~~aF~~Ai 130 (157)
T PRK15363 121 YAIKALKAVV 130 (157)
T ss_pred HHHHHHHHHH
Confidence 5555555444
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0017 Score=52.08 Aligned_cols=94 Identities=7% Similarity=0.051 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 010202 135 EIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLC 214 (515)
Q Consensus 135 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 214 (515)
...-.+...+...|++++|.++|+-+...++.+...+..|..++-..|++++|+..|....... +-|+..+-.+..++.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 3444556667789999999999999999999999999999999999999999999999998875 457888888999999
Q ss_pred HcCCHHHHHHHHHHh
Q 010202 215 KEGKVELARSVFLEL 229 (515)
Q Consensus 215 ~~~~~~~a~~~~~~~ 229 (515)
..|+.+.|++.|+..
T Consensus 115 ~lG~~~~A~~aF~~A 129 (157)
T PRK15363 115 ACDNVCYAIKALKAV 129 (157)
T ss_pred HcCCHHHHHHHHHHH
Confidence 999999999999884
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0061 Score=51.27 Aligned_cols=62 Identities=10% Similarity=-0.042 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010202 135 EIYEMMVDILGKVRQMDQMRALLEEMSKGHIV---TLNTIAKVMRRFSGAGQWEDAVRTFDELGT 196 (515)
Q Consensus 135 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 196 (515)
..+..+...|...|++++|...|++.....+. ....+..+...+.+.|++++|+..+.+..+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444455555555555444332211 123334444444444444444444444443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.11 Score=51.46 Aligned_cols=175 Identities=10% Similarity=0.069 Sum_probs=100.4
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHhc-CCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 010202 131 EHSSEIYEMMVDILGKVRQMDQMRALLEEMSK-GHI---------VTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLE 200 (515)
Q Consensus 131 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 200 (515)
.|.+..|..|.+.-...-.++.|+..|-+... .++ .+...-.+-+. +--|++++|.++|-+|.++.+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhhh-
Confidence 46788999998888888888888888866543 111 11111111122 235889999999988876542
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC--CCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHH
Q 010202 201 KNTETMNLLLDTLCKEGKVELARSVFLELKSC--IPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTI 278 (515)
Q Consensus 201 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 278 (515)
.+..+.+.|++-.+.++++.-..+ ...-...|+.+.+.++....+++|.+.|..-... ...
T Consensus 766 --------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~ 828 (1189)
T KOG2041|consen 766 --------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQ 828 (1189)
T ss_pred --------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhH
Confidence 456677778887777776552221 1223456777777777777777777777654321 123
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010202 279 IQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRIT 330 (515)
Q Consensus 279 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 330 (515)
+.++.+..++++-..+...+. -+....-.+..++.+.|.-++|.+.|
T Consensus 829 ~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHH
Confidence 445555555544443333222 23333444445555555555554443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00018 Score=52.30 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=7.5
Q ss_pred HHHHHHccCChhHHHHHHH
Q 010202 243 FIHGWCKINRVDEAQWTIQ 261 (515)
Q Consensus 243 li~~~~~~g~~~~A~~~~~ 261 (515)
+..+|.+.|++++|..+++
T Consensus 31 la~~~~~~~~y~~A~~~~~ 49 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQ 49 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH
Confidence 3333333444444443333
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0027 Score=60.25 Aligned_cols=92 Identities=12% Similarity=-0.009 Sum_probs=73.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChh
Q 010202 175 MRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVD 254 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 254 (515)
...+...|++++|++.|++..+.. +.+...|..+..+|...|++++|+..++++....+.+...|..+..+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 456677888899999988888754 3467777888888888888888888888866666677888888888888888888
Q ss_pred HHHHHHHHHHhCC
Q 010202 255 EAQWTIQEMKGHG 267 (515)
Q Consensus 255 ~A~~~~~~~~~~~ 267 (515)
+|...|++.....
T Consensus 88 eA~~~~~~al~l~ 100 (356)
T PLN03088 88 TAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHhC
Confidence 8888888887753
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0037 Score=52.42 Aligned_cols=78 Identities=9% Similarity=0.041 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHH
Q 010202 171 IAKVMRRFSGAGQWEDAVRTFDELGTFGLEK--NTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWC 248 (515)
Q Consensus 171 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 248 (515)
+..++..+...|++++|+..|++.......+ ...++..+..++...|+.++|+..++......+.....+..+...+.
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 3444555555666666666666665432111 12355555566666666666666666543333333444444444444
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00056 Score=46.76 Aligned_cols=58 Identities=14% Similarity=0.143 Sum_probs=44.2
Q ss_pred HHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 010202 140 MVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTF 197 (515)
Q Consensus 140 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 197 (515)
+...+.+.|++++|.+.|+++.+.++.+..++..+..++.+.|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4456777788888888888888877777778777788888888888888888877653
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00044 Score=47.81 Aligned_cols=61 Identities=15% Similarity=0.155 Sum_probs=41.3
Q ss_pred HcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 010202 145 GKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMN 207 (515)
Q Consensus 145 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 207 (515)
.+.|++++|.+.|+.+...++.+..+...++.+|.+.|++++|.++++++... .|+...|.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~ 62 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQ 62 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHH
Confidence 35677777777777777777777777777777777777777777777777664 45533333
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0028 Score=58.17 Aligned_cols=131 Identities=15% Similarity=0.136 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----cCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhc---hhCC-CCCCHH
Q 010202 309 TYTTVMSYLAKSGDFEEAIRITEKMKI----VGS-KPDSRFFNCLIYTLGRASRVQEAVYVYQVEM---PENG-VAPDTS 379 (515)
Q Consensus 309 ~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~-~~~~~~ 379 (515)
+|..+.+.|.-.|++++|+..++.-.. .|- ......+..+..++.-.|+++.|.+.|+... .+.| -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455555666666777777766654332 111 1123345566666666777777776665211 1111 112233
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHh----CCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHH
Q 010202 380 TFNTMITMFSHHGHHEKAFHVLEEMNK----LEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDD 440 (515)
Q Consensus 380 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 440 (515)
+..++...|.-..++++|+.++.+-.. .+...-....+.+|..++...|..++|+ .+.+.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl-~fae~ 340 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKAL-YFAEL 340 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHH-HHHHH
Confidence 445566666666667777766655432 1112223445666667777777777766 44433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.098 Score=48.18 Aligned_cols=125 Identities=13% Similarity=0.135 Sum_probs=65.9
Q ss_pred HHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCC-HHhHHHHHHHHHhc
Q 010202 349 IYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPN-VQTFHPLLKSCFKT 427 (515)
Q Consensus 349 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~ 427 (515)
..++.+.|+..++-.+++ .+-+....|+ .+. .|.+..--+.+..-+++..+....+|| ......+..+-...
T Consensus 270 Aralf~d~~~rKg~~ilE-~aWK~ePHP~--ia~----lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda 342 (531)
T COG3898 270 ARALFRDGNLRKGSKILE-TAWKAEPHPD--IAL----LYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDA 342 (531)
T ss_pred HHHHHhccchhhhhhHHH-HHHhcCCChH--HHH----HHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhc
Confidence 356667777777777776 5544433333 222 222222223344444444332224454 34455555666667
Q ss_pred CChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCC
Q 010202 428 GKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCR-ANKCEWAYLLFKEMIGHDITP 484 (515)
Q Consensus 428 g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p 484 (515)
|++..|. .--+... ...|....|..|.+.-.. .|+-.++..++.+.++..-.|
T Consensus 343 ~e~~~AR-a~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 343 GEFSAAR-AKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred cchHHHH-HHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 7776654 3333332 245666667666665433 377777777777776544333
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0079 Score=50.59 Aligned_cols=116 Identities=11% Similarity=0.055 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 010202 168 LNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKN--TETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIH 245 (515)
Q Consensus 168 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 245 (515)
...+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+.+.....+.+...+..+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 33455556666677777777777777665432221 3456666677777777777777777644444555666666666
Q ss_pred HHHccCC--------------hhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCC
Q 010202 246 GWCKINR--------------VDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYN 287 (515)
Q Consensus 246 ~~~~~g~--------------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 287 (515)
.+...|+ +++|.+.+++....+ | ..|..++..+...|+
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~--p--~~~~~~~~~~~~~~~ 166 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA--P--NNYIEAQNWLKTTGR 166 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC--c--hhHHHHHHHHHhcCc
Confidence 6666665 466777777766542 2 224445555444443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.018 Score=57.33 Aligned_cols=134 Identities=10% Similarity=0.029 Sum_probs=68.8
Q ss_pred CCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhc--------CCHHHHHHHHHhh
Q 010202 303 CPPNVVTYTTVMSYLAKS-----GDFEEAIRITEKMKIVGSKPD-SRFFNCLIYTLGRA--------SRVQEAVYVYQVE 368 (515)
Q Consensus 303 ~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~--------g~~~~A~~~~~~~ 368 (515)
.+.+...|...+.+.... ++.+.|..+|++..+. .|+ ...+..+..+|... .++..+.+... .
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~-~ 409 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD-N 409 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-H
Confidence 345666777776664432 2256677777777765 343 33444333322211 11222333332 1
Q ss_pred chhC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010202 369 MPEN-GVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVN 443 (515)
Q Consensus 369 ~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 443 (515)
.... ....+...|.++.......|++++|...++++... .|+...|..+...+...|+.++|. +.+++...
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L---~ps~~a~~~lG~~~~~~G~~~eA~-~~~~~A~~ 481 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL---EMSWLNYVLLGKVYELKGDNRLAA-DAYSTAFN 481 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHh
Confidence 1111 11223445555544455556666666666666663 356666666666666666666666 56655544
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.054 Score=44.44 Aligned_cols=128 Identities=16% Similarity=0.046 Sum_probs=79.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHH
Q 010202 304 PPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNT 383 (515)
Q Consensus 304 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 383 (515)
.|+..--..+..+....|+..+|...|.+....-...|....-.+..+....+++..|...++..|....-..++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 45555566666777777777777777777766555566666666666667777777777777633332211112223344
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHH
Q 010202 384 MITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECL 434 (515)
Q Consensus 384 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 434 (515)
+...+...|.+.+|..-|+.... .-|+...-......+.+.|+.+++-
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~---~ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS---YYPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH---hCCCHHHHHHHHHHHHHhcchhHHH
Confidence 55667777777777777777777 3466555444455566677666554
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.048 Score=47.22 Aligned_cols=170 Identities=11% Similarity=0.080 Sum_probs=87.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 010202 137 YEMMVDILGKVRQMDQMRALLEEMSKGHI---VTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTL 213 (515)
Q Consensus 137 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 213 (515)
+-.....+...|++++|.+.|+.+....+ ....+...++.++.+.|++++|...++++.+.-.......+...+.+.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 33444556678889999999988877544 355667777888888899999998888877642111111222222222
Q ss_pred HHcC----------C---HHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHH
Q 010202 214 CKEG----------K---VELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQ 280 (515)
Q Consensus 214 ~~~~----------~---~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 280 (515)
+... + ..+|... +..++.-|=...-..+|...+..+.+. =...--.+..
T Consensus 88 ~~~~~~~~~~~~~~D~~~~~~A~~~--------------~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~ 149 (203)
T PF13525_consen 88 SYYKQIPGILRSDRDQTSTRKAIEE--------------FEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIAR 149 (203)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHH--------------HHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHHhCccchhcccChHHHHHHHHH--------------HHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 2111 1 1122222 233333444444445555544444331 0111122455
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHH
Q 010202 281 SYCRQYNFSKVYELLDEMQAQGCPPN----VVTYTTVMSYLAKSGDFEEA 326 (515)
Q Consensus 281 ~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a 326 (515)
.|.+.|.+..|..-++.+.+. -|+ ..+...++.+|.+.|..+.+
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 667777777777777776664 222 23445566666666666533
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.19 Score=49.93 Aligned_cols=134 Identities=10% Similarity=0.164 Sum_probs=60.8
Q ss_pred CCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 010202 147 VRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTF-GLEKNTETMNLLLDTLCKEGKVELARSV 225 (515)
Q Consensus 147 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~ 225 (515)
-|++++|++++-++.+++. .+..+.+.|+|-...++++.--.. .-..-...++.+...++....++.|.+.
T Consensus 747 ~g~feeaek~yld~drrDL--------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDL--------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred hcchhHhhhhhhccchhhh--------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777777766655542 134444555555544444321100 0000122344444444444444444444
Q ss_pred HHHh----------------------hcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHH
Q 010202 226 FLEL----------------------KSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYC 283 (515)
Q Consensus 226 ~~~~----------------------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 283 (515)
|..- ...+|.+....-.+.+++...|.-++|.+.|-+-.. | ...+..|.
T Consensus 819 Y~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv 889 (1189)
T KOG2041|consen 819 YSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCV 889 (1189)
T ss_pred HHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHH
Confidence 4331 112344455555555555555555555554433221 1 12234455
Q ss_pred hcCChhHHHHHHHH
Q 010202 284 RQYNFSKVYELLDE 297 (515)
Q Consensus 284 ~~g~~~~A~~~~~~ 297 (515)
..++|.+|.++-+.
T Consensus 890 ~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 890 ELNQWGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555555443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0019 Score=54.44 Aligned_cols=88 Identities=14% Similarity=0.237 Sum_probs=52.8
Q ss_pred CChhhHHHHHHHHHc-----cCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhc----------------CChhHHHH
Q 010202 235 PNAHTFNIFIHGWCK-----INRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQ----------------YNFSKVYE 293 (515)
Q Consensus 235 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------------g~~~~A~~ 293 (515)
.+..+|..+++.|.+ .|..+=....+..|.+-|+..|..+|+.|++.+=+. .+.+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 344555555555543 355555666666666667666777777666655321 12345666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 010202 294 LLDEMQAQGCPPNVVTYTTVMSYLAKSGD 322 (515)
Q Consensus 294 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 322 (515)
++++|...|+-||..++..+++.+.+.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 77777777777777777777766655543
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.11 Score=46.39 Aligned_cols=58 Identities=10% Similarity=0.040 Sum_probs=32.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010202 278 IIQSYCRQYNFSKVYELLDEMQAQGCPPNVVT---YTTVMSYLAKSGDFEEAIRITEKMKIV 336 (515)
Q Consensus 278 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~~~~~ 336 (515)
....+...|++++|++.|+++...-..+ ..+ .-.+..++.+.+++++|...+++..+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3334455667777777776666542211 111 123445566667777777777666654
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.009 Score=50.05 Aligned_cols=94 Identities=11% Similarity=-0.027 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 010202 133 SSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIV---TLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLL 209 (515)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 209 (515)
....+..+...+...|++++|...|+......+. ...++..+...+...|++++|++.+++..+.. +....++..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 4566778888888899999999999998654332 34577888899999999999999999988752 3345556666
Q ss_pred HHHHH-------HcCCHHHHHHHHH
Q 010202 210 LDTLC-------KEGKVELARSVFL 227 (515)
Q Consensus 210 l~~~~-------~~~~~~~a~~~~~ 227 (515)
...+. ..|+++.|...++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHH
Confidence 66666 5556555444443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.017 Score=57.48 Aligned_cols=146 Identities=14% Similarity=0.124 Sum_probs=90.6
Q ss_pred cCCCCCHHHHHHHHHHHHh--cC---CHHHHHHHHHhhchhCCCCCC-HHHHHHHHHHHHhCC--------CHHHHHHHH
Q 010202 336 VGSKPDSRFFNCLIYTLGR--AS---RVQEAVYVYQVEMPENGVAPD-TSTFNTMITMFSHHG--------HHEKAFHVL 401 (515)
Q Consensus 336 ~~~~~~~~~~~~li~~~~~--~g---~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g--------~~~~A~~~~ 401 (515)
...+.+...|...+.+... .+ +.+.|..+|+ +..+. .|+ ...|..+..++.... +...+.+..
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle-~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLE-EILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 3346777788887776543 22 2668888888 44442 455 344444444443221 123344444
Q ss_pred HHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010202 402 EEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHD 481 (515)
Q Consensus 402 ~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 481 (515)
.+.........+...|..+.-.....|++++|. ..+++... ..|+...|..+...+...|+.++|.+.+++...
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~-~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~-- 481 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAY-QAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN-- 481 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHH-HHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--
Confidence 443332112344566766666666778888888 88888877 346777888888888888888888888888875
Q ss_pred CCCCHHHHH
Q 010202 482 ITPRYQTCR 490 (515)
Q Consensus 482 ~~p~~~~~~ 490 (515)
+.|...||.
T Consensus 482 L~P~~pt~~ 490 (517)
T PRK10153 482 LRPGENTLY 490 (517)
T ss_pred cCCCCchHH
Confidence 566666653
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.011 Score=53.19 Aligned_cols=100 Identities=14% Similarity=0.102 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCCHHHHHHH
Q 010202 135 EIYEMMVDILGKVRQMDQMRALLEEMSKGHIVT---LNTIAKVMRRFSGAGQWEDAVRTFDELGTFG--LEKNTETMNLL 209 (515)
Q Consensus 135 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~l 209 (515)
..|...+..+.+.|++++|...|+.+....|.+ .+++..+...|...|++++|...|..+.+.- -+.....+-.+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 445555555566677777777777777665543 4666667777777777777777777776531 11123344445
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcCCC
Q 010202 210 LDTLCKEGKVELARSVFLELKSCIP 234 (515)
Q Consensus 210 l~~~~~~~~~~~a~~~~~~~~~~~~ 234 (515)
...+...|+.+.|..+|+.+....|
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 5566667777777777776554443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.18 Score=46.80 Aligned_cols=124 Identities=13% Similarity=0.155 Sum_probs=81.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHH
Q 010202 345 FNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSC 424 (515)
Q Consensus 345 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~ 424 (515)
.+.-|.-+...|+...|.++-. ... -|+..-|...+.+++..++|++-.++-.. . -++.-|..++.+|
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k-~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----k---KsPIGyepFv~~~ 247 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKK-EFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----K---KSPIGYEPFVEAC 247 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHH-HcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C---CCCCChHHHHHHH
Confidence 3444556667788888877776 443 27888888888888888888776664332 1 1236788888888
Q ss_pred HhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010202 425 FKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQ 498 (515)
Q Consensus 425 ~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 498 (515)
.+.|...+|. .++..+ .+..-+..|.+.|++.+|.+...+. -|......+...|..
T Consensus 248 ~~~~~~~eA~-~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~------kd~~~L~~i~~~~~~ 303 (319)
T PF04840_consen 248 LKYGNKKEAS-KYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKE------KDIDLLKQILKRCPG 303 (319)
T ss_pred HHCCCHHHHH-HHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHc------CCHHHHHHHHHHCCC
Confidence 8888888877 665441 1245567788888888887776554 244444444444433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0014 Score=45.39 Aligned_cols=64 Identities=11% Similarity=0.136 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhh
Q 010202 133 SSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAG-QWEDAVRTFDELGT 196 (515)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 196 (515)
++.+|..+...+.+.|++++|+..|++..+.++.++.++..+..+|.+.| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45677788888888888888888888888888888888888888888888 68888888877765
|
... |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.051 Score=50.35 Aligned_cols=298 Identities=13% Similarity=0.080 Sum_probs=159.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc
Q 010202 170 TIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCK 249 (515)
Q Consensus 170 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 249 (515)
........+.+..++.+|+..+....+.+ +-+..-|..-...+...|+++++.--.+.-.+--+.......-.-+++..
T Consensus 51 ~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 51 EAKEEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLA 129 (486)
T ss_pred HHHhhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhh
Confidence 33444566777777788888887777754 23455555555566666777776655544211111122233333333444
Q ss_pred cCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHH-HHHHhcCCHHHHH
Q 010202 250 INRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGC-PPNVVTYTTVM-SYLAKSGDFEEAI 327 (515)
Q Consensus 250 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li-~~~~~~g~~~~a~ 327 (515)
.++..+|.+.++ +...+ ....++..++....... +|...++..+- ..+.-.|+.+.|.
T Consensus 130 ~~~~i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~ 189 (486)
T KOG0550|consen 130 LSDLIEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQ 189 (486)
T ss_pred hHHHHHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHH
Confidence 444444444443 11111 11222333333222211 23344444443 3445688999998
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHH---HHH----------HHhCC
Q 010202 328 RITEKMKIVGSKPDSRFFNCLIY--TLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTM---ITM----------FSHHG 392 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l---i~~----------~~~~g 392 (515)
++--.+.+.. . ...+...+. ++--.++.+.|...|+ +-.. ..|+...-..+ ... ..+.|
T Consensus 190 ~ea~~ilkld-~--~n~~al~vrg~~~yy~~~~~ka~~hf~-qal~--ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G 263 (486)
T KOG0550|consen 190 SEAIDILKLD-A--TNAEALYVRGLCLYYNDNADKAINHFQ-QALR--LDPDHQKSKSASMMPKKLEVKKERGNDAFKNG 263 (486)
T ss_pred HHHHHHHhcc-c--chhHHHHhcccccccccchHHHHHHHh-hhhc--cChhhhhHHhHhhhHHHHHHHHhhhhhHhhcc
Confidence 8887777643 2 223333333 3345678899999998 4333 34554432222 222 24678
Q ss_pred CHHHHHHHHHHHHhCC--CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 010202 393 HHEKAFHVLEEMNKLE--HCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLD-ITTYTLVIHGLCRANKCEW 469 (515)
Q Consensus 393 ~~~~A~~~~~~m~~~~--~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~ 469 (515)
++..|.+.|.+.+... ...|+...|.....+..+.|+.++|+ .-.+...+ +.+. ...|..-..++.-.+++++
T Consensus 264 ~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eai-sdc~~Al~---iD~syikall~ra~c~l~le~~e~ 339 (486)
T KOG0550|consen 264 NYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAI-SDCNEALK---IDSSYIKALLRRANCHLALEKWEE 339 (486)
T ss_pred chhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhh-hhhhhhhh---cCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999988732 12334445666666778889999988 66665544 3222 1222223344555678888
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 010202 470 AYLLFKEMIGHDITP-RYQTCRLILDEVKQ 498 (515)
Q Consensus 470 A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~ 498 (515)
|.+-++...+....+ ...++.-...++.+
T Consensus 340 AV~d~~~a~q~~~s~e~r~~l~~A~~aLkk 369 (486)
T KOG0550|consen 340 AVEDYEKAMQLEKDCEIRRTLREAQLALKK 369 (486)
T ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 888888877643332 23344444444543
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.012 Score=49.66 Aligned_cols=108 Identities=17% Similarity=0.215 Sum_probs=75.6
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCH
Q 010202 304 PPNVVTYTTVMSYLAK-----SGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDT 378 (515)
Q Consensus 304 ~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 378 (515)
..|..+|..+++.|.+ .|..+=....++.|.+-|+.-|..+|+.|++.+=+ |.+ .|..
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~f----------------vp~n 106 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKF----------------VPRN 106 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCc----------------cccc
Confidence 4578888888888875 36677777788888888888888888888876543 221 1211
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHH
Q 010202 379 STFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDE 432 (515)
Q Consensus 379 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 432 (515)
... ++..- ...+-+-|++++++|...| +.||..++..++..+.+.+..-.
T Consensus 107 ~fQ-~~F~h--yp~Qq~c~i~lL~qME~~g-V~Pd~Et~~~ll~iFG~~s~p~~ 156 (228)
T PF06239_consen 107 FFQ-AEFMH--YPRQQECAIDLLEQMENNG-VMPDKETEQMLLNIFGRKSHPMK 156 (228)
T ss_pred HHH-HHhcc--CcHHHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHhccccHHHH
Confidence 111 11111 1234567899999999999 99999999999999877776543
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0011 Score=45.72 Aligned_cols=49 Identities=16% Similarity=0.173 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHh
Q 010202 217 GKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKG 265 (515)
Q Consensus 217 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 265 (515)
|++++|.+.|+.+....|.+..++..+..+|.+.|++++|..+++++..
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444443333333444444444444444444444444444433
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.032 Score=43.17 Aligned_cols=85 Identities=19% Similarity=0.097 Sum_probs=43.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHH
Q 010202 280 QSYCRQYNFSKVYELLDEMQAQGCPPN--VVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPD----SRFFNCLIYTLG 353 (515)
Q Consensus 280 ~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~ 353 (515)
.++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|..++++..... |+ ......+..++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHH
Confidence 344455666666666666665554433 2334445555556666666666666555431 21 111222223445
Q ss_pred hcCCHHHHHHHHH
Q 010202 354 RASRVQEAVYVYQ 366 (515)
Q Consensus 354 ~~g~~~~A~~~~~ 366 (515)
..|+.++|...+-
T Consensus 87 ~~gr~~eAl~~~l 99 (120)
T PF12688_consen 87 NLGRPKEALEWLL 99 (120)
T ss_pred HCCCHHHHHHHHH
Confidence 5566666655554
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.024 Score=50.51 Aligned_cols=101 Identities=9% Similarity=0.002 Sum_probs=64.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccC---ChhHHHHHHHHHHhCCCCccHhHHH
Q 010202 200 EKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKIN---RVDEAQWTIQEMKGHGCHPCVISYS 276 (515)
Q Consensus 200 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~ 276 (515)
+-|...|-.|...|...|+.+.|...|....+-.++|...+..+..++.... ...++..+|+++.... +-|+.+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 3466667777777777777777777776655555566666666665554432 3446667777766653 33555566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC
Q 010202 277 TIIQSYCRQYNFSKVYELLDEMQAQ 301 (515)
Q Consensus 277 ~li~~~~~~g~~~~A~~~~~~m~~~ 301 (515)
.|...+...|++.+|...|+.|.+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc
Confidence 6666677777777777777777765
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.047 Score=47.39 Aligned_cols=143 Identities=12% Similarity=0.062 Sum_probs=101.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH-----
Q 010202 274 SYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCL----- 348 (515)
Q Consensus 274 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l----- 348 (515)
..+.++..+.-.|.+.-...++++..+...+.++.....+.+.-.+.||.+.|...|+...+..-..|..+.+.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 455677777778888888888998888766667888888888888999999999999988765434444444443
Q ss_pred HHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHH
Q 010202 349 IYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLL 421 (515)
Q Consensus 349 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll 421 (515)
...|.-.+++..|...+. ++.... ..|...-|.-.-+....|+..+|++.++.|.+ ..|...+-++++
T Consensus 259 a~i~lg~nn~a~a~r~~~-~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~---~~P~~~l~es~~ 326 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFT-EILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ---QDPRHYLHESVL 326 (366)
T ss_pred hhheecccchHHHHHHHh-hccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc---cCCccchhhhHH
Confidence 345566778888888887 554432 22455555555555567899999999999988 457666555444
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0025 Score=43.49 Aligned_cols=49 Identities=18% Similarity=0.166 Sum_probs=17.9
Q ss_pred HcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHH
Q 010202 215 KEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEM 263 (515)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 263 (515)
..|++++|.+.|+++....|.+...+..+..++...|++++|...|+++
T Consensus 9 ~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 9 QQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333333333333333323333333333333333333333333333333
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.014 Score=45.68 Aligned_cols=50 Identities=14% Similarity=0.150 Sum_probs=36.7
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 010202 410 CKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHG 460 (515)
Q Consensus 410 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~ 460 (515)
..|+..+..+++.+|+..|++..|+ ++++...+.++++.+...|..|+.=
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al-~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSAL-KLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHH-HHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 5677777777777777777777777 7777777777777677777766653
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.16 Score=44.19 Aligned_cols=153 Identities=10% Similarity=0.078 Sum_probs=106.3
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 010202 289 SKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVE 368 (515)
Q Consensus 289 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 368 (515)
+..++++++-.. ...+.++..+.-.|.+.-...++.++++...+.++...+.|...-.+.|+.+.|...|+ .
T Consensus 166 ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~-~ 237 (366)
T KOG2796|consen 166 ESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQ-D 237 (366)
T ss_pred hhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHH-H
Confidence 445555554332 24455666666778888888999999987777888889999999999999999999998 6
Q ss_pred chhCCCCCCHHHHHHHH-----HHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010202 369 MPENGVAPDTSTFNTMI-----TMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVN 443 (515)
Q Consensus 369 ~~~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 443 (515)
..+..-+.|..+.+.++ ..|.-.+++..|...+.+....+ +.|+...+.-.-...-.|+...|+ +.++.|..
T Consensus 238 vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D--~~~~~a~NnKALcllYlg~l~DAi-K~~e~~~~ 314 (366)
T KOG2796|consen 238 VEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD--PRNAVANNNKALCLLYLGKLKDAL-KQLEAMVQ 314 (366)
T ss_pred HHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC--CCchhhhchHHHHHHHHHHHHHHH-HHHHHHhc
Confidence 66544444444444433 34556778888888888888765 444555554444455678888888 88888876
Q ss_pred cCCCCCCHHHHH
Q 010202 444 KHHLSLDITTYT 455 (515)
Q Consensus 444 ~~~~~p~~~~~~ 455 (515)
..|...+-+
T Consensus 315 ---~~P~~~l~e 323 (366)
T KOG2796|consen 315 ---QDPRHYLHE 323 (366)
T ss_pred ---cCCccchhh
Confidence 345544433
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.018 Score=51.04 Aligned_cols=103 Identities=15% Similarity=0.108 Sum_probs=60.7
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhH
Q 010202 176 RRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDE 255 (515)
Q Consensus 176 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 255 (515)
.-+.+.+++++|+..|.+.++.. +-|...|..-..+|++.|.++.|++-.+....-.+.-..+|..|..+|...|++++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 44555666666666666666642 23555566666666666666666666555433334445566666666666666666
Q ss_pred HHHHHHHHHhCCCCccHhHHHHHHHH
Q 010202 256 AQWTIQEMKGHGCHPCVISYSTIIQS 281 (515)
Q Consensus 256 A~~~~~~~~~~~~~~~~~~~~~li~~ 281 (515)
|.+.|++..+. .|+-.+|-.=+..
T Consensus 168 A~~aykKaLel--dP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 168 AIEAYKKALEL--DPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHhhhcc--CCCcHHHHHHHHH
Confidence 66666666554 4555555444433
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.17 Score=41.63 Aligned_cols=135 Identities=13% Similarity=0.076 Sum_probs=82.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHH
Q 010202 339 KPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFH 418 (515)
Q Consensus 339 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~ 418 (515)
.|++..--.|..+....|+..+|...|+ +....-..-|......+.++....+++..|...++++-+..+-.-++.+..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~-qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQ-QALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHH-HHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 5666666667777777777777777777 444444445666677777777777777777777777766321111233445
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010202 419 PLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMI 478 (515)
Q Consensus 419 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 478 (515)
.+...+...|+..+|. ..|+...+ .-|+...-.-....+.+.|+.++|..-+.+..
T Consensus 165 l~aR~laa~g~~a~Ae-safe~a~~---~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 165 LFARTLAAQGKYADAE-SAFEVAIS---YYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHhcCCchhHH-HHHHHHHH---hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 5566777777777766 66777666 23444333334445667776666655444443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.035 Score=49.91 Aligned_cols=101 Identities=15% Similarity=0.158 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCH----HhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCC-HHHH
Q 010202 380 TFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNV----QTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLD-ITTY 454 (515)
Q Consensus 380 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~-~~~~ 454 (515)
.|...+..+.+.|++++|+..|+.+.+.. |+. ..+..+..++...|++++|+ ..|+.+.+.++-.|. ...+
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~-~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAA-YYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHCCCCcchhHHH
Confidence 44444444455678888888888887743 442 45666777788888888888 778888765543332 3445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 010202 455 TLVIHGLCRANKCEWAYLLFKEMIGHDITPRY 486 (515)
Q Consensus 455 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 486 (515)
-.+...+...|+.++|.+++++..+ ..|+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~--~yP~s 250 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIK--KYPGT 250 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--HCcCC
Confidence 5566677778888888888888775 34544
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.059 Score=48.07 Aligned_cols=104 Identities=14% Similarity=0.123 Sum_probs=69.1
Q ss_pred CCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCCCHH
Q 010202 232 CIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQY---NFSKVYELLDEMQAQGCPPNVV 308 (515)
Q Consensus 232 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~~~~~ 308 (515)
..|.|...|-.|...|...|+.+.|..-|.+..+.. .++...+..+..++.... ...++.++|+++.... +-|..
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~ir 228 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIR 228 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHH
Confidence 356677777778888888888888887777776652 345555555555544332 2456777777777653 22555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010202 309 TYTTVMSYLAKSGDFEEAIRITEKMKIVG 337 (515)
Q Consensus 309 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 337 (515)
+...+...+...|++.+|...|+.|.+..
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 66666667777788888888887777764
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0048 Score=42.63 Aligned_cols=61 Identities=11% Similarity=-0.048 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 010202 451 ITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITP-RYQTCRLILDEVKQKH-MYDAAEKIEAVMK 513 (515)
Q Consensus 451 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~ 513 (515)
...|..+...+...|++++|+..|++.++. .| +...|..+..++...| ++++|++.++...
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344555555555555555555555555542 23 2334444444455555 4555555555543
|
... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.66 Score=46.73 Aligned_cols=138 Identities=14% Similarity=0.070 Sum_probs=74.9
Q ss_pred CCCCCCCHHHHHH-----HHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHhhCCC
Q 010202 127 CPGYEHSSEIYEM-----MVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQ--WEDAVRTFDELGTFGL 199 (515)
Q Consensus 127 ~~~~~~~~~~~~~-----li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~ 199 (515)
..|++.+..-|.. +|+-+...+.+..|+++-..+..+.......+......+.+..+ -+++++..++=.....
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 3566665555543 56667777888888888777654433333344444455555432 2233333333222211
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc-C--C--CCChhhHHHHHHHHHccCChhHHHHHHHHHHh
Q 010202 200 EKNTETMNLLLDTLCKEGKVELARSVFLELKS-C--I--PPNAHTFNIFIHGWCKINRVDEAQWTIQEMKG 265 (515)
Q Consensus 200 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~--~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 265 (515)
-....|..+.+-....|+.+.|..+.+.-.. + + -.+..-+...+.-+.+.|+.+-...++-.+..
T Consensus 505 -~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 505 -TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred -CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 2344566677777778888888877765211 1 1 12223344455555666676666666666554
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.45 Score=43.56 Aligned_cols=122 Identities=13% Similarity=0.077 Sum_probs=64.8
Q ss_pred HcCCChHHHHHHHHHHhcCC-CCCHHHH-------HHHHHHHHhcC-CHHHHHHHHHHHhhC--------CCCCCH----
Q 010202 145 GKVRQMDQMRALLEEMSKGH-IVTLNTI-------AKVMRRFSGAG-QWEDAVRTFDELGTF--------GLEKNT---- 203 (515)
Q Consensus 145 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~-------~~li~~~~~~g-~~~~A~~~~~~m~~~--------g~~~~~---- 203 (515)
.+.|+++.|..++.++.... ..++... ..+.......+ ++++|..++++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 45677778888777775533 2222222 22333444555 777777776655332 112222
Q ss_pred -HHHHHHHHHHHHcCCHH---HHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 010202 204 -ETMNLLLDTLCKEGKVE---LARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGH 266 (515)
Q Consensus 204 -~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 266 (515)
.++..++.+|...+..+ +|..+.+.+....+....++-.-+..+.+.++.+++.+.+.+|...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 23444555555555433 3444444454444444555555556666666666666666666654
|
It is also involved in sporulation []. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.32 Score=42.09 Aligned_cols=65 Identities=17% Similarity=0.197 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC
Q 010202 170 TIAKVMRRFSGAGQWEDAVRTFDELGTFGL--EKNTETMNLLLDTLCKEGKVELARSVFLELKSCIP 234 (515)
Q Consensus 170 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 234 (515)
.+......+.+.|++++|.+.|+.+..... +--....-.++.++.+.|+++.|...+++.....|
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP 73 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP 73 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 333445667778888888888888876421 11234455667778888888888888888544433
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.51 Score=44.08 Aligned_cols=279 Identities=9% Similarity=0.012 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHH
Q 010202 134 SEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEK-NTETMNLLLDT 212 (515)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ll~~ 212 (515)
........+.+-+..++..|+..+....+-.+.+...|..-+..+..-|++++|+--.+.-.+. +| .+......-++
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c 126 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQC 126 (486)
T ss_pred HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhh
Confidence 4455566778888899999999999999888888777777778888889999988777665543 33 23345555566
Q ss_pred HHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCC-CccHhHHHHHH-HHHHhcCChhH
Q 010202 213 LCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGC-HPCVISYSTII-QSYCRQYNFSK 290 (515)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li-~~~~~~g~~~~ 290 (515)
+...++..+|.+.++.- ..+ ....++..++....... +|...+|..+- .++...|++++
T Consensus 127 ~~a~~~~i~A~~~~~~~--------~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~ 187 (486)
T KOG0550|consen 127 HLALSDLIEAEEKLKSK--------QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDE 187 (486)
T ss_pred hhhhHHHHHHHHHhhhh--------hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchh
Confidence 66666666666665521 111 11112222222221111 12223333322 23334455555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-------------HHHHHHHHhc
Q 010202 291 VYELLDEMQAQGCPPNVVTYTTVMS--YLAKSGDFEEAIRITEKMKIVGSKPDSRFF-------------NCLIYTLGRA 355 (515)
Q Consensus 291 A~~~~~~m~~~g~~~~~~~~~~li~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------------~~li~~~~~~ 355 (515)
|.+.--...+..-. + .+...++ ++.-.++.+.+...|++.++.+ |+-... ..=.....+.
T Consensus 188 a~~ea~~ilkld~~-n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~ 262 (486)
T KOG0550|consen 188 AQSEAIDILKLDAT-N--AEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKN 262 (486)
T ss_pred HHHHHHHHHhcccc-h--hHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhc
Confidence 55544444433110 1 1222222 2223445555555555554432 221111 1111223456
Q ss_pred CCHHHHHHHHHhhchh---CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCC-HHhHHHHHHHHHhcCChH
Q 010202 356 SRVQEAVYVYQVEMPE---NGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPN-VQTFHPLLKSCFKTGKTD 431 (515)
Q Consensus 356 g~~~~A~~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~g~~~ 431 (515)
|++..|.+.|. +... .+.+|+...|.....+..+.|+.++|+.--++..+ +.|. ...|..-..++...++++
T Consensus 263 G~y~~A~E~Yt-eal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~le~~e 338 (486)
T KOG0550|consen 263 GNYRKAYECYT-EALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLALEKWE 338 (486)
T ss_pred cchhHHHHHHH-HhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777766 3221 22334455565556666667777777766666654 2222 112222223344456666
Q ss_pred HHHHHHHHHHHH
Q 010202 432 ECLSQLLDDMVN 443 (515)
Q Consensus 432 ~A~~~~~~~~~~ 443 (515)
+|+ +-++...+
T Consensus 339 ~AV-~d~~~a~q 349 (486)
T KOG0550|consen 339 EAV-EDYEKAMQ 349 (486)
T ss_pred HHH-HHHHHHHh
Confidence 666 55555444
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.011 Score=41.25 Aligned_cols=56 Identities=13% Similarity=0.115 Sum_probs=40.5
Q ss_pred HHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 010202 142 DILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTF 197 (515)
Q Consensus 142 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 197 (515)
.+|.+.++++.|.++++.+...+|.++..+......+.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45667777777777777777777767666666677777777777777777777664
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.033 Score=51.47 Aligned_cols=133 Identities=8% Similarity=0.043 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH----hCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHH---cCC-CCCCH
Q 010202 380 TFNTMITMFSHHGHHEKAFHVLEEMN----KLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVN---KHH-LSLDI 451 (515)
Q Consensus 380 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~-~~p~~ 451 (515)
.|..+...|.-.|+++.|+..-+.-. +-|........+..+..++.-.|+++.|+ +.++.... +.| -....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~-ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAI-EHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHH-HHHHHHHHHHHHhcchhHHH
Confidence 34444555555567777765543322 22211223345666667777777777776 55544322 011 11223
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh----C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010202 452 TTYTLVIHGLCRANKCEWAYLLFKEMIG----H-DITPRYQTCRLILDEVKQKHMYDAAEKIEAVMK 513 (515)
Q Consensus 452 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 513 (515)
.+.-+|.++|.-..++++|+.++.+-+. . +..-....+++|..++...|..++|..+.+.-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3444566777767777777766554331 1 223345567777777777777777777665543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.02 Score=46.68 Aligned_cols=71 Identities=18% Similarity=0.286 Sum_probs=42.7
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh-----hCCCCCCHHHH
Q 010202 136 IYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELG-----TFGLEKNTETM 206 (515)
Q Consensus 136 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~~~~~~~ 206 (515)
+...++..+...|++++|..+.+.+...+|.+...+..+|.+|...|+..+|++.|+.+. +.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 444556666667777777777777777777777777777777777777777777776653 23666665543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.82 Score=45.23 Aligned_cols=41 Identities=22% Similarity=0.264 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010202 185 EDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLE 228 (515)
Q Consensus 185 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 228 (515)
-+.+--++++.+.|-.|+... +...++-.|.+.+|.++|.+
T Consensus 617 L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 617 LELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 344455667777776676554 34456667777777777765
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.43 Score=41.83 Aligned_cols=182 Identities=13% Similarity=0.140 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 010202 134 SEIYEMMVDILGKVRQMDQMRALLEEMSKGHI---VTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLL 210 (515)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 210 (515)
...|+.-+.- .+.|++++|.+.|+.+..+.+ -+..+...++.++-+.+++++|+..+++..+.-......-|...|
T Consensus 35 ~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 3445544444 467999999999999988766 356788888899999999999999999987753222333455555
Q ss_pred HHHHHc-------CCHHHHHHHHHH---hhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHH-HHHH
Q 010202 211 DTLCKE-------GKVELARSVFLE---LKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISY-STII 279 (515)
Q Consensus 211 ~~~~~~-------~~~~~a~~~~~~---~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li 279 (515)
.+++.. .|...+...+.. +...+|.+.. ...|......+... ..-+ -.+.
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Y--------------a~dA~~~i~~~~d~-----LA~~Em~Ia 174 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRY--------------APDAKARIVKLNDA-----LAGHEMAIA 174 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcc--------------hhhHHHHHHHHHHH-----HHHHHHHHH
Confidence 555422 223333333333 2223332221 12222222222110 0001 2345
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010202 280 QSYCRQYNFSKVYELLDEMQAQGCPPN---VVTYTTVMSYLAKSGDFEEAIRITEKMKIV 336 (515)
Q Consensus 280 ~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 336 (515)
+.|.+.|.+..|..-+++|.+. .+-+ ...+-.+..+|.+.|-.++|.+.-+-+..+
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 6677888888888888888775 2222 344556667777888777777765555443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.58 Score=43.99 Aligned_cols=71 Identities=15% Similarity=0.122 Sum_probs=30.8
Q ss_pred HHHcCCChHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 010202 143 ILGKVRQMDQMRALLEEMSKGH----IVTLNTIAKVMRRFSG---AGQWEDAVRTFDELGTFGLEKNTETMNLLLDTL 213 (515)
Q Consensus 143 ~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 213 (515)
.|-...+++..+++.+.+.... ..+.+.-...+-++-+ .|+.++|++++..+....-.+++.+|..+.+.|
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 3445555555555555554421 1122222222333334 455555555555533333344555554444433
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.79 Score=43.43 Aligned_cols=137 Identities=9% Similarity=0.077 Sum_probs=71.4
Q ss_pred cCCCCHHHHHHHhhccccCCCCcCC-HHHHHHHHHHhh-hCHHHHHHHHHHhccCCCCCCCHHHHHHHHH--HHHcCCCh
Q 010202 75 HVGSSEDEVFQSLKQDHVCNAIQPS-HYLVNKLIHRFK-DDWKSALGIFRWAGSCPGYEHSSEIYEMMVD--ILGKVRQM 150 (515)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~g~~p~-~~~~~~ll~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~ 150 (515)
++-...+.+|.+..+.......... ...-+.+|+++- ++.+.-........+..|- + .|-.|.. ..-+.+.+
T Consensus 20 ~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~--s--~~l~LF~~L~~Y~~k~~ 95 (549)
T PF07079_consen 20 KKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGK--S--AYLPLFKALVAYKQKEY 95 (549)
T ss_pred hhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCC--c--hHHHHHHHHHHHHhhhH
Confidence 3334445566666553111111111 233345666653 3444444444444333332 2 2222322 23467888
Q ss_pred HHHHHHHHHHhcC--C-CCCH---HHH---------HHHHHHHHhcCCHHHHHHHHHHHhhCCCC----CCHHHHHHHHH
Q 010202 151 DQMRALLEEMSKG--H-IVTL---NTI---------AKVMRRFSGAGQWEDAVRTFDELGTFGLE----KNTETMNLLLD 211 (515)
Q Consensus 151 ~~A~~~~~~~~~~--~-~~~~---~~~---------~~li~~~~~~g~~~~A~~~~~~m~~~g~~----~~~~~~~~ll~ 211 (515)
..|.+.|.....+ + .+.| +.. ...+.++...|++.++..+++++...=++ -+..+|+.++-
T Consensus 96 ~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vl 175 (549)
T PF07079_consen 96 RKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVL 175 (549)
T ss_pred HHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Confidence 8888888766543 1 1111 111 12456778899999999888888654333 57888887665
Q ss_pred HHHH
Q 010202 212 TLCK 215 (515)
Q Consensus 212 ~~~~ 215 (515)
.+.+
T Consensus 176 mlsr 179 (549)
T PF07079_consen 176 MLSR 179 (549)
T ss_pred HHhH
Confidence 5543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.83 Score=43.01 Aligned_cols=76 Identities=8% Similarity=-0.018 Sum_probs=38.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcC----CCCChhhHHHHHHHHHc---cCChhHHHHHHHHHHhCCCCccHhHHHHHH
Q 010202 207 NLLLDTLCKEGKVELARSVFLELKSC----IPPNAHTFNIFIHGWCK---INRVDEAQWTIQEMKGHGCHPCVISYSTII 279 (515)
Q Consensus 207 ~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 279 (515)
..++-+|....+++...++.+.+..- ......+-....-++-+ .|+.++|++++..+....-.++..+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34444566666666666666665442 22222223333344444 566666666666644333345555555555
Q ss_pred HHH
Q 010202 280 QSY 282 (515)
Q Consensus 280 ~~~ 282 (515)
+.|
T Consensus 225 RIy 227 (374)
T PF13281_consen 225 RIY 227 (374)
T ss_pred HHH
Confidence 444
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.055 Score=42.33 Aligned_cols=101 Identities=12% Similarity=0.218 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHH
Q 010202 306 NVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMI 385 (515)
Q Consensus 306 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 385 (515)
|..++.+++.++++.|+++....+++..= |+..+... ..+. + -......|+..+..+++
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~-------~---~~~spl~Pt~~lL~AIv 59 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD-------Y---PPSSPLYPTSRLLIAIV 59 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc-------c---CCCCCCCCCHHHHHHHH
Confidence 34566777777777777777766665442 22211100 0000 1 13345667888888888
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhc
Q 010202 386 TMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKT 427 (515)
Q Consensus 386 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~ 427 (515)
.+|+..|++..|+++++...+.-+++.+..+|..|+.-+...
T Consensus 60 ~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 60 HSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 888888888888888887777655666777777777665443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.11 Score=50.45 Aligned_cols=55 Identities=16% Similarity=0.236 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 010202 202 NTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMK 264 (515)
Q Consensus 202 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 264 (515)
+...|..|.+...+.|+++.|++.|.+.+. +..|+-.|.-.|+.+.-.++.+...
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 344444444444444444444444444332 3334444444444444444443333
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.17 Score=49.27 Aligned_cols=154 Identities=13% Similarity=0.165 Sum_probs=104.2
Q ss_pred CCChHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 010202 147 VRQMDQMRALLEEMS-KGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSV 225 (515)
Q Consensus 147 ~g~~~~A~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~ 225 (515)
.|+++++.++.+.-. -.. .+.+-...++..+-+.|..+.|+++-. |+. .-.....+.|+++.|.++
T Consensus 274 ~~d~~~v~~~i~~~~ll~~-i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 274 RGDFEEVLRMIAASNLLPN-IPKDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLDIALEI 340 (443)
T ss_dssp TT-HHH-----HHHHTGGG---HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHH
T ss_pred cCChhhhhhhhhhhhhccc-CChhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHHHHHHH
Confidence 567777655554111 111 224445667888888999999998753 322 234567789999999887
Q ss_pred HHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 010202 226 FLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPP 305 (515)
Q Consensus 226 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 305 (515)
.+++ ++...|..|.+...+.|+++-|++.|++..+ |..|+-.|.-.|+.+.-.++.+.....|-
T Consensus 341 a~~~-----~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-- 404 (443)
T PF04053_consen 341 AKEL-----DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD-- 404 (443)
T ss_dssp CCCC-----STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---
T ss_pred HHhc-----CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC--
Confidence 6544 4778999999999999999999999998764 67788888889999888888888877762
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010202 306 NVVTYTTVMSYLAKSGDFEEAIRITEKM 333 (515)
Q Consensus 306 ~~~~~~~li~~~~~~g~~~~a~~~~~~~ 333 (515)
++....++...|+.++..+++.+.
T Consensus 405 ----~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 405 ----INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ----HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 455556667779999888887664
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.84 Score=42.37 Aligned_cols=305 Identities=16% Similarity=0.124 Sum_probs=189.4
Q ss_pred CHHHHHHHHHHhccCCCCCCCHHHHHHHHHHH--HcCCChHHHHHHHHHHhcCCCCCHHHHHHHHH--HHHhcCCHHHHH
Q 010202 113 DWKSALGIFRWAGSCPGYEHSSEIYEMMVDIL--GKVRQMDQMRALLEEMSKGHIVTLNTIAKVMR--RFSGAGQWEDAV 188 (515)
Q Consensus 113 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~ 188 (515)
.+..+...|..-+...| |.+|-..+ .-.|+-..|+++-.+....-..+...+..++. .-.-.|+++.|.
T Consensus 68 sP~t~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar 140 (531)
T COG3898 68 SPYTARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDAR 140 (531)
T ss_pred CcHHHHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHH
Confidence 34445555555544333 34444444 34678888888877664322234444444443 344579999999
Q ss_pred HHHHHHhhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 010202 189 RTFDELGTFGLEKNTE--TMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGH 266 (515)
Q Consensus 189 ~~~~~m~~~g~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 266 (515)
+-|+.|... |... -...|.-...+.|+.+.|.+.-+.....-+.-...+.+.+...|..|+++.|+++++.-+..
T Consensus 141 ~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~ 217 (531)
T COG3898 141 KKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAA 217 (531)
T ss_pred HHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 999999862 2221 12233333456788888888877766556666788999999999999999999999887654
Q ss_pred C-CCccHh--HHHHHHHHHH---hcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010202 267 G-CHPCVI--SYSTIIQSYC---RQYNFSKVYELLDEMQAQGCPPNVV-TYTTVMSYLAKSGDFEEAIRITEKMKIVGSK 339 (515)
Q Consensus 267 ~-~~~~~~--~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 339 (515)
. +.++.. .-..|+.+-. -.-+...|...-.+..+ +.||-. .-..-..++.+.|++.++-.+++.+-+....
T Consensus 218 ~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 218 KVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH 295 (531)
T ss_pred HhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC
Confidence 2 233332 1222332221 12345555555544443 355532 2333457788999999999999999887444
Q ss_pred CCHHHHHHHHHHHHhcCCHHH-----HHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCH
Q 010202 340 PDSRFFNCLIYTLGRASRVQE-----AVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNV 414 (515)
Q Consensus 340 ~~~~~~~~li~~~~~~g~~~~-----A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~ 414 (515)
|+ ++. +..+.+.|+... +..+- .|+. .+..+...+..+-...|++..|..--+.... ..|..
T Consensus 296 P~--ia~--lY~~ar~gdta~dRlkRa~~L~--slk~----nnaes~~~va~aAlda~e~~~ARa~Aeaa~r---~~pre 362 (531)
T COG3898 296 PD--IAL--LYVRARSGDTALDRLKRAKKLE--SLKP----NNAESSLAVAEAALDAGEFSAARAKAEAAAR---EAPRE 362 (531)
T ss_pred hH--HHH--HHHHhcCCCcHHHHHHHHHHHH--hcCc----cchHHHHHHHHHHHhccchHHHHHHHHHHhh---hCchh
Confidence 44 332 233456665332 22222 2322 3456667778888889999988877777666 56888
Q ss_pred HhHHHHHHHHH-hcCChHHHHHHHHHHHHH
Q 010202 415 QTFHPLLKSCF-KTGKTDECLSQLLDDMVN 443 (515)
Q Consensus 415 ~~~~~ll~~~~-~~g~~~~A~~~~~~~~~~ 443 (515)
..|..+.+.-. ..|+-.++. ..+.+..+
T Consensus 363 s~~lLlAdIeeAetGDqg~vR-~wlAqav~ 391 (531)
T COG3898 363 SAYLLLADIEEAETGDQGKVR-QWLAQAVK 391 (531)
T ss_pred hHHHHHHHHHhhccCchHHHH-HHHHHHhc
Confidence 88887776654 448888865 66666655
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.13 Score=45.30 Aligned_cols=105 Identities=15% Similarity=0.145 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCC-CHHHHHHH
Q 010202 135 EIYEMMVDILGKVRQMDQMRALLEEMSKGHI---VTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFG-LEK-NTETMNLL 209 (515)
Q Consensus 135 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~-~~~~~~~l 209 (515)
..|+.-++.| +.|++..|...|....++.+ .+.+++..|...+...|++++|..+|..+.+.- -.| -+..+--|
T Consensus 143 ~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 143 KLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 3677777766 56779999999998887655 477888888999999999999999998887642 122 34677778
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcCCCCChhhH
Q 010202 210 LDTLCKEGKVELARSVFLELKSCIPPNAHTF 240 (515)
Q Consensus 210 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 240 (515)
.....+.|+.++|...|+++.+.+|.+..+-
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 8888888999999999988777666555443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.022 Score=46.34 Aligned_cols=51 Identities=16% Similarity=0.212 Sum_probs=20.4
Q ss_pred HHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHH
Q 010202 212 TLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQE 262 (515)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 262 (515)
.+...|+++.|..+...+....|.+...|..+|.+|...|+..+|.++|++
T Consensus 71 ~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~ 121 (146)
T PF03704_consen 71 ALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYER 121 (146)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 333444444444444443333334444444444444444444444444443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.25 E-value=1.1 Score=42.43 Aligned_cols=144 Identities=13% Similarity=0.209 Sum_probs=96.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhchhCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhH-HHHH
Q 010202 344 FFNCLIYTLGRASRVQEAVYVYQVEMPENG-VAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTF-HPLL 421 (515)
Q Consensus 344 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~-~~ll 421 (515)
+|...+..-.+..-++.|..+|. ...+.+ +.+++..++++|..++ .|+..-|..+|+--... .||...| ...+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~-k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~kyl 473 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFI-KLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKYL 473 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH-HHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHHH
Confidence 45556666667777888888887 666666 5677778888887666 46777888888765552 3554443 3455
Q ss_pred HHHHhcCChHHHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010202 422 KSCFKTGKTDECLSQLLDDMVNKHHLSLD--ITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVK 497 (515)
Q Consensus 422 ~~~~~~g~~~~A~~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 497 (515)
.-+...++-+.|. .+|+..+.+ +..+ ...|..+|+--..-|+...+..+-++|.+ +.|...+...+.+-|.
T Consensus 474 ~fLi~inde~nar-aLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 474 LFLIRINDEENAR-ALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHhCcHHHHH-HHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 5566777777766 777755542 2223 46788888888888888888888777765 5566666666655553
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.19 Score=40.78 Aligned_cols=90 Identities=10% Similarity=0.031 Sum_probs=57.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChh
Q 010202 175 MRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVD 254 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 254 (515)
..-+.+.|++++|..+|.-+.-.+ .-|..-+..|..++-..+++++|...|...-.-.+.|+...-....+|...|+.+
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 444556777777777777666543 2345555666666666777777777776632222344445555667777777777
Q ss_pred HHHHHHHHHHh
Q 010202 255 EAQWTIQEMKG 265 (515)
Q Consensus 255 ~A~~~~~~~~~ 265 (515)
.|...|+....
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 77777777665
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.15 Score=40.40 Aligned_cols=76 Identities=9% Similarity=0.090 Sum_probs=53.5
Q ss_pred HHHHHcCCChHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 010202 141 VDILGKVRQMDQMRALLEEMSKGHI---VTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKE 216 (515)
Q Consensus 141 i~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 216 (515)
..-..+.|++++|.+.|+.+..+.+ -...+-..++.+|.+.+++++|+..+++.++.....-..-|...+.+++..
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 3344567899999999999888665 366777788889999999999999999888764322223444455554433
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.22 E-value=1 Score=41.83 Aligned_cols=103 Identities=16% Similarity=0.227 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHH
Q 010202 310 YTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFS 389 (515)
Q Consensus 310 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 389 (515)
.+..|.-+...|+...|.++-++.. .||-.-|...+.+|+..++|++-..+.. . . .+++-|...+.+|.
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~-s-k-----KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAK-S-K-----KSPIGYEPFVEACL 248 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHh-C-C-----CCCCChHHHHHHHH
Confidence 3444455555566655555544442 4566666666666666666665555433 1 1 12355666666666
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHH
Q 010202 390 HHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECL 434 (515)
Q Consensus 390 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 434 (515)
+.|+..+|..+..++ + +..-+..|.+.|++.+|.
T Consensus 249 ~~~~~~eA~~yI~k~------~-----~~~rv~~y~~~~~~~~A~ 282 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI------P-----DEERVEMYLKCGDYKEAA 282 (319)
T ss_pred HCCCHHHHHHHHHhC------C-----hHHHHHHHHHCCCHHHHH
Confidence 666666666655542 1 122344555666666655
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.4 Score=38.60 Aligned_cols=12 Identities=0% Similarity=0.332 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 010202 134 SEIYEMMVDILG 145 (515)
Q Consensus 134 ~~~~~~li~~~~ 145 (515)
+..++.++..|+
T Consensus 41 ~~~~~~li~ly~ 52 (140)
T smart00299 41 PALQTKLIELYA 52 (140)
T ss_pred hhHHHHHHHHHH
Confidence 333444444443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.8 Score=45.30 Aligned_cols=22 Identities=9% Similarity=0.125 Sum_probs=11.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 010202 457 VIHGLCRANKCEWAYLLFKEMI 478 (515)
Q Consensus 457 li~~~~~~g~~~~A~~~~~~m~ 478 (515)
+++.....|++++|..+.++..
T Consensus 779 iVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 779 LVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred HhhheeecccchHhHhhhhhCc
Confidence 4444555555555555555543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.027 Score=39.28 Aligned_cols=20 Identities=15% Similarity=0.091 Sum_probs=7.5
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 010202 459 HGLCRANKCEWAYLLFKEMI 478 (515)
Q Consensus 459 ~~~~~~g~~~~A~~~~~~m~ 478 (515)
.++.+.|++++|.+.+++..
T Consensus 37 ~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 37 RCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHHHhccHHHHHHHHHHHH
Confidence 33333333333333333333
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.15 Score=48.56 Aligned_cols=67 Identities=7% Similarity=-0.197 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 010202 131 EHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLN---TIAKVMRRFSGAGQWEDAVRTFDELGTF 197 (515)
Q Consensus 131 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~ 197 (515)
+.+...++.+..+|.+.|++++|...|++..+.++.+.. ++..+..+|...|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 457889999999999999999999999999888887664 4888899999999999999999999874
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.42 Score=42.66 Aligned_cols=121 Identities=12% Similarity=0.081 Sum_probs=60.4
Q ss_pred HHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 010202 144 LGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELAR 223 (515)
Q Consensus 144 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~ 223 (515)
....|++.+|..+|+......+.+..+...++.+|...|+.+.|..++..+...--.........-+..+.+.....+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 34556666666666666665555555555566666666666666666666543211111111122233333333333333
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHh
Q 010202 224 SVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKG 265 (515)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 265 (515)
.+-.++.. .|.|...-..+...+...|+.++|.+.+-.+.+
T Consensus 224 ~l~~~~aa-dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 224 DLQRRLAA-DPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33222221 233555555555666666666666555544443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.099 Score=48.58 Aligned_cols=109 Identities=15% Similarity=0.124 Sum_probs=54.7
Q ss_pred HHHHHHcCCChHHHHHHHHHHhc----CCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 010202 140 MVDILGKVRQMDQMRALLEEMSK----GHIVT-----------LNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTE 204 (515)
Q Consensus 140 li~~~~~~g~~~~A~~~~~~~~~----~~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 204 (515)
-.+.|.+.|++..|...|+.+.. ....+ ..++.++..+|.+.+++.+|++.-+..+..+ ++|+.
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~K 292 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVK 292 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchh
Confidence 34678899999999999887643 11111 1123334444445555555555444444433 33444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc
Q 010202 205 TMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCK 249 (515)
Q Consensus 205 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 249 (515)
..-.-..+|...|+++.|+..|..+..-.|.|..+-+.|+.+-.+
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 444444444445555555555544444334444444444444333
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.9 Score=39.35 Aligned_cols=208 Identities=13% Similarity=0.119 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 010202 134 SEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTL 213 (515)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 213 (515)
...|.--..+|-...++++|...+.+..+....+.+.+. ..+.++.|.-+.+++.+. ..-+..|+.-...|
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 344555556777778888888877776532221111111 012234444444444432 12233455556677
Q ss_pred HHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC---C--CCccHhHHHHHHHHHHhcCCh
Q 010202 214 CKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGH---G--CHPCVISYSTIIQSYCRQYNF 288 (515)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~~~~li~~~~~~g~~ 288 (515)
..+|..+.|-..+++.-+ ..+.-++++|+.+|++.... + .+.-...+..+-+.+.+...+
T Consensus 102 ~E~GspdtAAmaleKAak---------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAK---------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HHhCCcchHHHHHHHHHH---------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 777777777666665221 11223344444444443211 0 000112233344455666666
Q ss_pred hHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHhcCCHHH
Q 010202 289 SKVYELLDEMQAQ----GCPPN-VVTYTTVMSYLAKSGDFEEAIRITEKMKIVG---SKPDSRFFNCLIYTLGRASRVQE 360 (515)
Q Consensus 289 ~~A~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~ 360 (515)
++|-..+.+-... .--++ -..|...|-.+....|+..|...++.--+.+ -+.+..+...|+.+| ..|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 6655544332211 00111 1234444555555667777777777644321 133455666666665 3566666
Q ss_pred HHHHHH
Q 010202 361 AVYVYQ 366 (515)
Q Consensus 361 A~~~~~ 366 (515)
+..++.
T Consensus 246 ~~kvl~ 251 (308)
T KOG1585|consen 246 IKKVLS 251 (308)
T ss_pred HHHHHc
Confidence 666654
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.028 Score=39.90 Aligned_cols=61 Identities=18% Similarity=0.335 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010202 274 SYSTIIQSYCRQYNFSKVYELLDEMQAQ----GC-PPN-VVTYTTVMSYLAKSGDFEEAIRITEKMK 334 (515)
Q Consensus 274 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~ 334 (515)
+|+.+...|...|++++|++.|++..+. |- .|+ ..++..+...+...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555554421 10 011 2344445555555555555555555443
|
... |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.015 Score=41.30 Aligned_cols=60 Identities=15% Similarity=0.239 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhcC----CC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010202 135 EIYEMMVDILGKVRQMDQMRALLEEMSKG----HI---VTLNTIAKVMRRFSGAGQWEDAVRTFDEL 194 (515)
Q Consensus 135 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 194 (515)
.+++.+...|.+.|++++|++.|++..+. +. ....++..+..+|...|++++|++.+++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45677777777777777777777765431 11 12334445555555666666666655554
|
... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.99 E-value=2.1 Score=43.33 Aligned_cols=342 Identities=16% Similarity=0.151 Sum_probs=187.1
Q ss_pred cCCCCcCCHHHHHHHH-----HHhh--hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCCh---HHHHHHHHHHh
Q 010202 92 VCNAIQPSHYLVNKLI-----HRFK--DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQM---DQMRALLEEMS 161 (515)
Q Consensus 92 ~~~g~~p~~~~~~~ll-----~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~ 161 (515)
.+-|+..+..-|.++= ..+. +....|.++..|+....+ . ...+|.....-+.+..+. +-+..+=+++.
T Consensus 424 ~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~-~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls 501 (829)
T KOG2280|consen 424 VRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPES-Q-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLS 501 (829)
T ss_pred cccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccc-c-ccHHHHHHHHHHHhccCccchHHHHHHHHHhc
Confidence 4567777777776543 3322 467788899888852221 1 256777888877776432 22333333333
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCh
Q 010202 162 KGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLE----KNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNA 237 (515)
Q Consensus 162 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 237 (515)
.. ....-+|..+.+...+.|+++-|..+++.=.+.+.. .+..-+...+.-+.+.|+.+....++-.++.. .+.
T Consensus 502 ~~-~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~--~~~ 578 (829)
T KOG2280|consen 502 AK-LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK--LNR 578 (829)
T ss_pred cc-CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH--HHH
Confidence 32 122334445567777899999999887643222210 01122334444555666666666665554321 111
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHH--HHH----HCCCCCCHHHHH
Q 010202 238 HTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLD--EMQ----AQGCPPNVVTYT 311 (515)
Q Consensus 238 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--~m~----~~g~~~~~~~~~ 311 (515)
..+. .-..+...|..+|.+..+.. |.. .+-+.|-+ ++-.+++.-|. ... ..|..|+. .
T Consensus 579 s~l~------~~l~~~p~a~~lY~~~~r~~---~~~---~l~d~y~q-~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k 642 (829)
T KOG2280|consen 579 SSLF------MTLRNQPLALSLYRQFMRHQ---DRA---TLYDFYNQ-DDNHQALASFHLQASYAAETIEGRIPAL---K 642 (829)
T ss_pred HHHH------HHHHhchhhhHHHHHHHHhh---chh---hhhhhhhc-ccchhhhhhhhhhhhhhhhhhcccchhH---H
Confidence 1111 11234455666666655431 211 12222222 23222222221 111 12333333 3
Q ss_pred HHHHHHHhcCCHH---H-------HHHHHHHHHh-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHH
Q 010202 312 TVMSYLAKSGDFE---E-------AIRITEKMKI-VGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTST 380 (515)
Q Consensus 312 ~li~~~~~~g~~~---~-------a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 380 (515)
...+++++..... + -.++.+.+.. .|..-..-+.+--+.-+...|+..+|.++-. +.+ -||...
T Consensus 643 ~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~-~Fk----ipdKr~ 717 (829)
T KOG2280|consen 643 TAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKS-DFK----IPDKRL 717 (829)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHH-hcC----Ccchhh
Confidence 3344444433311 1 1122222221 2222333344445566677899999988887 554 389999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 010202 381 FNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHG 460 (515)
Q Consensus 381 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~ 460 (515)
|-.-+.+++..+++++-+++-+.. ++ +.-|.....+|.+.|+.++|. +++.+... +.-.+.+
T Consensus 718 ~wLk~~aLa~~~kweeLekfAksk------ks-PIGy~PFVe~c~~~~n~~EA~-KYiprv~~----------l~ekv~a 779 (829)
T KOG2280|consen 718 WWLKLTALADIKKWEELEKFAKSK------KS-PIGYLPFVEACLKQGNKDEAK-KYIPRVGG----------LQEKVKA 779 (829)
T ss_pred HHHHHHHHHhhhhHHHHHHHHhcc------CC-CCCchhHHHHHHhcccHHHHh-hhhhccCC----------hHHHHHH
Confidence 999999999999998876665543 22 567888999999999999998 77644311 1156788
Q ss_pred HHhcCCHHHHHHHHHHH
Q 010202 461 LCRANKCEWAYLLFKEM 477 (515)
Q Consensus 461 ~~~~g~~~~A~~~~~~m 477 (515)
|.+.|++.+|.+..-+-
T Consensus 780 y~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 780 YLRVGDVKEAADLAAEH 796 (829)
T ss_pred HHHhccHHHHHHHHHHh
Confidence 99999999988765443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.98 E-value=1.1 Score=40.08 Aligned_cols=148 Identities=14% Similarity=0.147 Sum_probs=83.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHH
Q 010202 316 YLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHE 395 (515)
Q Consensus 316 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 395 (515)
.....|++.+|...|+...... +-+...--.+..+|...|+.+.|..++. .+...--.........-|..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~-~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILA-ALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHH-hCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3456677777777777777653 2334455567777788888888888887 5543221111122122233333333333
Q ss_pred HHHHHHHHHHhCCCCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010202 396 KAFHVLEEMNKLEHCKP-NVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWA 470 (515)
Q Consensus 396 ~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 470 (515)
+...+-.+.-. .| |...-..+...+...|+.++|++.++.-+.+..+.. |...-..++..+.-.|..+.+
T Consensus 221 ~~~~l~~~~aa----dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 221 EIQDLQRRLAA----DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred CHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCHH
Confidence 33333333322 24 555566666777788888888866666666655544 444555666666555544433
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.76 Score=44.06 Aligned_cols=147 Identities=7% Similarity=0.057 Sum_probs=86.1
Q ss_pred ChHHHHHHHHHHh---cCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 010202 149 QMDQMRALLEEMS---KGHIVTLNTIAKVMRRFSG---------AGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKE 216 (515)
Q Consensus 149 ~~~~A~~~~~~~~---~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 216 (515)
..+.|..+|++.. ..++....++..+..++.. .....+|.+.-++..+.+ +-|......+..+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 3567888898888 5666555555544433322 223445666666666654 44666666666666666
Q ss_pred CCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCC-CCccHhHHHHHHHHHHhcCChhHHHHHH
Q 010202 217 GKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHG-CHPCVISYSTIIQSYCRQYNFSKVYELL 295 (515)
Q Consensus 217 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~ 295 (515)
++++.|..+|++...-.|....+|....-...-+|+.++|.+.+++..+.. .+.-.......++.|+.++ .++|+++|
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 777777777777555445555666666666666777777777777755442 1111223333344555443 56666665
Q ss_pred HH
Q 010202 296 DE 297 (515)
Q Consensus 296 ~~ 297 (515)
-+
T Consensus 431 ~~ 432 (458)
T PRK11906 431 YK 432 (458)
T ss_pred hh
Confidence 43
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.6 Score=46.22 Aligned_cols=163 Identities=13% Similarity=0.051 Sum_probs=95.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhchhCCCCCCH-----HHHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCCCCHHhH
Q 010202 347 CLIYTLGRASRVQEAVYVYQVEMPENGVAPDT-----STFNTMITMFSH----HGHHEKAFHVLEEMNKLEHCKPNVQTF 417 (515)
Q Consensus 347 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~ 417 (515)
.++...+=.|+-+.+.+.+.......++.-.. ..|+.++..++. ....+.|.+++..+.+. -|+...|
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~lf 269 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSALF 269 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHHH
Confidence 34444444566666666555222222221111 123333333332 45677888899888884 4776665
Q ss_pred HHHH-HHHHhcCChHHHHHHHHHHHHHcCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010202 418 HPLL-KSCFKTGKTDECLSQLLDDMVNKHHLSL--DITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILD 494 (515)
Q Consensus 418 ~~ll-~~~~~~g~~~~A~~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 494 (515)
...- +.+...|++++|+ +.+++.......-+ ....+--+...+.-.+++++|.+.|.++.+.. .-+..+|.-+..
T Consensus 270 l~~~gR~~~~~g~~~~Ai-~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAI-ESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHhcCHHHHH-HHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 4433 4566788999998 88886553111111 22334456677788899999999999998643 334455555555
Q ss_pred HH-HhcCCH-------HHHHHHHHHHHh
Q 010202 495 EV-KQKHMY-------DAAEKIEAVMKK 514 (515)
Q Consensus 495 ~~-~~~g~~-------~~a~~~~~~m~~ 514 (515)
+| ...|+. ++|.+++.++.+
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 55 567877 777777776643
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.79 E-value=1.8 Score=41.05 Aligned_cols=146 Identities=16% Similarity=0.257 Sum_probs=100.3
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHH
Q 010202 272 VISYSTIIQSYCRQYNFSKVYELLDEMQAQG-CPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFF-NCLI 349 (515)
Q Consensus 272 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~li 349 (515)
...|...++...+..-.+.|..+|-+..+.| +.+++..+++++..++. |+...|..+|+.-... -||...| .-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4567777777777777888888888888887 56777888888877654 6777888888765543 2343333 4455
Q ss_pred HHHHhcCCHHHHHHHHHhhchhCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHH
Q 010202 350 YTLGRASRVQEAVYVYQVEMPENGVAPD--TSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCF 425 (515)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~ 425 (515)
..+...++-+.|..+|+..+.. +..+ ...|..+|..-.+-|+...+..+=++|.+ +.|...+......-|.
T Consensus 474 ~fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e---~~pQen~~evF~Sry~ 546 (660)
T COG5107 474 LFLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE---LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH---HcCcHhHHHHHHHHHh
Confidence 6667788888888888733332 1222 45788888888888888888888888777 4566555555554443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.094 Score=42.55 Aligned_cols=87 Identities=9% Similarity=0.008 Sum_probs=68.8
Q ss_pred HHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 010202 144 LGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELAR 223 (515)
Q Consensus 144 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~ 223 (515)
+-..|++++|..+|.-+..-++-+.+-+..|..++-..+++++|+..|......+ .-|+..+-....++...|+.+.|+
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHH
Confidence 3467999999999999888888888888888888888999999999998775543 234444555777888899999999
Q ss_pred HHHHHhhc
Q 010202 224 SVFLELKS 231 (515)
Q Consensus 224 ~~~~~~~~ 231 (515)
..|.....
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 99888544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.84 Score=45.18 Aligned_cols=113 Identities=17% Similarity=0.101 Sum_probs=57.6
Q ss_pred CChhHHHHHHHHHHhCCCCccHhHHHHH-HHHHHhcCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHH
Q 010202 251 NRVDEAQWTIQEMKGHGCHPCVISYSTI-IQSYCRQYNFSKVYELLDEMQAQG---CPPNVVTYTTVMSYLAKSGDFEEA 326 (515)
Q Consensus 251 g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~~~g~~~~a 326 (515)
.+.+.|.++++.+..+ -|+...|... .+.+...|+.++|++.|+...... .+.....+--+.-.+.-.+++++|
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 4556666666666654 3555444333 234445666666666666543211 111233344444555666667777
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHH-HHHHhcCCH-------HHHHHHHH
Q 010202 327 IRITEKMKIVGSKPDSRFFNCLI-YTLGRASRV-------QEAVYVYQ 366 (515)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~-------~~A~~~~~ 366 (515)
.+.|..+.+.. .-+..+|.-+. .++...|+. ++|..+|.
T Consensus 325 ~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~ 371 (468)
T PF10300_consen 325 AEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFR 371 (468)
T ss_pred HHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHH
Confidence 76666666543 22333333322 233345555 66666665
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.29 Score=46.73 Aligned_cols=66 Identities=15% Similarity=0.008 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCCh---hhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 010202 201 KNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNA---HTFNIFIHGWCKINRVDEAQWTIQEMKGH 266 (515)
Q Consensus 201 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 266 (515)
.+...++.+..+|...|++++|...|++.....|.+. .+|..+..+|.+.|+.++|...+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3566677777777777777777777777433333333 34677777777777777777777777664
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.28 Score=43.27 Aligned_cols=95 Identities=16% Similarity=0.181 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCC----HHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCC-HHHH
Q 010202 380 TFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPN----VQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLD-ITTY 454 (515)
Q Consensus 380 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~-~~~~ 454 (515)
.|+.-+.. .+.|++..|...|...++.. |+ ...+-.|..++...|++++|. .+|..+.+.++-.|. +..+
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y---P~s~~~~nA~yWLGe~~y~qg~y~~Aa-~~f~~~~k~~P~s~KApdal 218 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKY---PNSTYTPNAYYWLGESLYAQGDYEDAA-YIFARVVKDYPKSPKAPDAL 218 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcC---CCCcccchhHHHHHHHHHhcccchHHH-HHHHHHHHhCCCCCCChHHH
Confidence 56665554 45677999999998888854 32 234666888888999999988 888888887776665 4677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 010202 455 TLVIHGLCRANKCEWAYLLFKEMIG 479 (515)
Q Consensus 455 ~~li~~~~~~g~~~~A~~~~~~m~~ 479 (515)
--|.....+.|+.++|..+|++..+
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 7888888899999999999998876
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.46 E-value=1.1 Score=36.08 Aligned_cols=41 Identities=20% Similarity=0.186 Sum_probs=17.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 010202 313 VMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGR 354 (515)
Q Consensus 313 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 354 (515)
++..+...+.......+++.+.+.+ ..+....+.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 3444444444444444444444433 2333444444444443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.14 Score=45.03 Aligned_cols=84 Identities=13% Similarity=0.141 Sum_probs=55.5
Q ss_pred CChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhc----------------CChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010202 251 NRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQ----------------YNFSKVYELLDEMQAQGCPPNVVTYTTVM 314 (515)
Q Consensus 251 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------------g~~~~A~~~~~~m~~~g~~~~~~~~~~li 314 (515)
+.++-....++.|.+-|+..|..+|+.|++.+=+. .+-+-+++++++|...|+.||..+-..++
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lv 165 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILV 165 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHH
Confidence 34444445555666666666666666666554321 12356889999999999999999999999
Q ss_pred HHHHhcCCH-HHHHHHHHHHH
Q 010202 315 SYLAKSGDF-EEAIRITEKMK 334 (515)
Q Consensus 315 ~~~~~~g~~-~~a~~~~~~~~ 334 (515)
+++.+.+-. .+..++.-.|-
T Consensus 166 n~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 166 NAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHhccccccHHHHHHHHHhhh
Confidence 999887753 33444444443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.17 E-value=1.1 Score=34.71 Aligned_cols=140 Identities=9% Similarity=0.045 Sum_probs=74.7
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHH
Q 010202 178 FSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQ 257 (515)
Q Consensus 178 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 257 (515)
..-.|..++..++..+.... .+..-+|.++.-....-+-+-..+.++.+-+-+.- ..+|++....
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi------------s~C~NlKrVi 76 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI------------SKCGNLKRVI 76 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G------------GG-S-THHHH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc------------hhhcchHHHH
Confidence 34456777777777776652 34555555555555555555555666555443221 2234444333
Q ss_pred HHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010202 258 WTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVG 337 (515)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 337 (515)
..+-.+- .+.......++.....|+-|.-.+++.++.+. -.+++.....+..+|.+.|+..++.+++.+.-+.|
T Consensus 77 ~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 77 ECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3333221 13344556666777777777777777777653 35677777777788888888888888887777766
Q ss_pred C
Q 010202 338 S 338 (515)
Q Consensus 338 ~ 338 (515)
+
T Consensus 151 ~ 151 (161)
T PF09205_consen 151 L 151 (161)
T ss_dssp -
T ss_pred h
Confidence 4
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.06 E-value=2.1 Score=38.97 Aligned_cols=154 Identities=10% Similarity=0.069 Sum_probs=100.7
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC----hhhHHHHHHHHHccCCh
Q 010202 178 FSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPN----AHTFNIFIHGWCKINRV 253 (515)
Q Consensus 178 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~ 253 (515)
.--+|+..+|-..++++.+. .+.|...++..=++|.-.|+.+.-...++++...-.++ ..+-..+.-++..+|-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 34467778887788888765 46677888888888888888888888887754433333 33444455566678889
Q ss_pred hHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHH
Q 010202 254 DEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPN---VVTYTTVMSYLAKSGDFEEAIRIT 330 (515)
Q Consensus 254 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~ 330 (515)
++|++.-++..+.+ +.|.-+-.++...+-.+|++.++.++..+-...=-..+ ..-|--..-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99988888887765 44666666777777788888888887765443200000 111212222344557888888888
Q ss_pred HHH
Q 010202 331 EKM 333 (515)
Q Consensus 331 ~~~ 333 (515)
+.=
T Consensus 271 D~e 273 (491)
T KOG2610|consen 271 DRE 273 (491)
T ss_pred HHH
Confidence 753
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.075 Score=32.65 Aligned_cols=37 Identities=11% Similarity=0.028 Sum_probs=24.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHH
Q 010202 136 IYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIA 172 (515)
Q Consensus 136 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 172 (515)
++..+...|.+.|++++|+++|+++.+.++.+..+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~ 39 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWR 39 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 4556666677777777777777777666666655554
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.89 E-value=1.5 Score=41.17 Aligned_cols=61 Identities=10% Similarity=0.109 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010202 380 TFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVN 443 (515)
Q Consensus 380 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 443 (515)
+++.+..+|.+.+++.+|++.-.+....+ ++|....--=..+|...|+++.|. ..|+++.+
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~--~~N~KALyRrG~A~l~~~e~~~A~-~df~ka~k 319 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD--PNNVKALYRRGQALLALGEYDLAR-DDFQKALK 319 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHhhccHHHHH-HHHHHHHH
Confidence 34444455555555555555555555543 444444444455555555555555 55555544
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=94.88 E-value=5.5 Score=41.10 Aligned_cols=62 Identities=3% Similarity=0.013 Sum_probs=36.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHhhCC
Q 010202 137 YEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQ-------WEDAVRTFDELGTFG 198 (515)
Q Consensus 137 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g 198 (515)
.=++|-.+.++|.+++|.++..+...........+...+..|....+ -++...-|+...+..
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~ 182 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS 182 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 34677788899999999999966655444333444444677766422 235555566655543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.87 E-value=1.8 Score=35.46 Aligned_cols=132 Identities=14% Similarity=0.107 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH-HHHH--
Q 010202 134 SEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIA--KVMRRFSGAGQWEDAVRTFDELGTFGLEKNTE-TMNL-- 208 (515)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~-- 208 (515)
...|..-++ ++..+..++|..-|..+...+.-+...+. .......+.|+...|+..|+++-.....|-.. -...
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 344444444 34566777888888887776655444432 23455667778888888888776653333222 1111
Q ss_pred HHHHHHHcCCHHHHHHHHHHhh-cCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 010202 209 LLDTLCKEGKVELARSVFLELK-SCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGH 266 (515)
Q Consensus 209 ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 266 (515)
-.-.+...|.++....-.+.+. .+.+-....-.+|.-+-.+.|++..|.++|..+...
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 1123455677777666666543 334444555566666677777777777777776653
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.84 E-value=1.3 Score=45.41 Aligned_cols=171 Identities=15% Similarity=0.204 Sum_probs=82.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH----HHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc
Q 010202 174 VMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLD----TLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCK 249 (515)
Q Consensus 174 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 249 (515)
-+..+.+...++-|+.+-+.- ..+..+...+.. -+.+.|++++|...|-+-..-.+|. .+|.-|..
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~-----~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s-----~Vi~kfLd 409 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQ-----HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS-----EVIKKFLD 409 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH-----HHHHHhcC
Confidence 355666666666666554332 123333333332 3335566666666665522222222 23444555
Q ss_pred cCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010202 250 INRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRI 329 (515)
Q Consensus 250 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 329 (515)
..++.+-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+... .|... .-....+..|.+.+-.++|..+
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~--fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWF--FDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Cccee--eeHHHHHHHHHHhChHHHHHHH
Confidence 55566666666666666643 34444556666666666665555544333 22110 0123344445555555555444
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010202 330 TEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQ 366 (515)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 366 (515)
-..... .......++ -..|++++|.+.+.
T Consensus 486 A~k~~~-----he~vl~ill---e~~~ny~eAl~yi~ 514 (933)
T KOG2114|consen 486 ATKFKK-----HEWVLDILL---EDLHNYEEALRYIS 514 (933)
T ss_pred HHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHh
Confidence 333221 222333332 33456666666665
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.82 E-value=4.2 Score=39.45 Aligned_cols=55 Identities=7% Similarity=-0.093 Sum_probs=29.0
Q ss_pred HHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010202 140 MVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGT 196 (515)
Q Consensus 140 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 196 (515)
++.---+..+.+.-.++-.+..+.++....+|..|. --......+|+++|++..+
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLA--EEeA~Ti~Eae~l~rqAvk 228 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEINPDCADAYILLA--EEEASTIVEAEELLRQAVK 228 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcc--cccccCHHHHHHHHHHHHH
Confidence 344444555555555555566555655556654221 1223445666666666554
|
The molecular function of this protein is uncertain. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.60 E-value=1.7 Score=33.84 Aligned_cols=65 Identities=15% Similarity=0.213 Sum_probs=37.9
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 010202 415 QTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDI 482 (515)
Q Consensus 415 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 482 (515)
..+...+......|+-+. ++++..++.+ .-++++...-.+..+|.+.|+..++.+++++..+.|+
T Consensus 87 e~vD~ALd~lv~~~kkDq-Ldki~~~l~k--n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQ-LDKIYNELKK--NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHH-HHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhccHHH-HHHHHHHHhh--ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344445566666666666 4466666654 2345666677777777777777777777777777664
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.5 Score=42.45 Aligned_cols=78 Identities=15% Similarity=0.226 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCCCCCHHHHHHH
Q 010202 135 EIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGT-----FGLEKNTETMNLL 209 (515)
Q Consensus 135 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~~~l 209 (515)
.++..++..+..+|+++.+.+.++++...++-+...+..++.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 35566777777777777777777777777777777777777777777777777777776644 4666666655544
Q ss_pred HHH
Q 010202 210 LDT 212 (515)
Q Consensus 210 l~~ 212 (515)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 443
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=94.47 E-value=1.9 Score=38.73 Aligned_cols=116 Identities=14% Similarity=0.108 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHh-cCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010202 394 HEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFK-TGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYL 472 (515)
Q Consensus 394 ~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 472 (515)
..+|+.+|+.....+.+--|..+...+++.... .+..-.|.-++.+-+...++-.++..+...++..+++.+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 344555555221111133445555555555444 2222233334455555555555666666666666666666666666
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010202 473 LFKEMIGH-DITPRYQTCRLILDEVKQKHMYDAAEKIE 509 (515)
Q Consensus 473 ~~~~m~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 509 (515)
+++..... +..-|...|..++......|+..-..++.
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 66665543 33445566666666666666666555554
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.38 E-value=3.2 Score=36.17 Aligned_cols=203 Identities=15% Similarity=0.148 Sum_probs=88.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcc
Q 010202 171 IAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKI 250 (515)
Q Consensus 171 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 250 (515)
|.....+|....++++|...+.+..+. .+.|...|. ....++.|.-+.+++.. ++.-+..|+--..+|..+
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~k-lsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSK-LSEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHh
Confidence 444455666666677666665554431 111111111 11122333333333321 222334455566666666
Q ss_pred CChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCC---HHHHHHHHHHHHhcCCHHH
Q 010202 251 NRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGC--PPN---VVTYTTVMSYLAKSGDFEE 325 (515)
Q Consensus 251 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~---~~~~~~li~~~~~~g~~~~ 325 (515)
|.++.|-..+++.-+. ..+-++++|+++|++...--. ..+ ...+...-..+.+...+++
T Consensus 105 GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~E 168 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTE 168 (308)
T ss_pred CCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhH
Confidence 6666666555554321 123445555555555432100 001 1122333344445555555
Q ss_pred HHHHHHHHHh----cCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhh---chhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 010202 326 AIRITEKMKI----VGSKPDS-RFFNCLIYTLGRASRVQEAVYVYQVE---MPENGVAPDTSTFNTMITMFSHHGHHEKA 397 (515)
Q Consensus 326 a~~~~~~~~~----~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A 397 (515)
|-..+.+-.. ..--++. ..|-+.|-.|.-..++..|...++ . +....-.-+..+...|+.+|- .|+.+++
T Consensus 169 aa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r-~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~ 246 (308)
T KOG1585|consen 169 AATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYR-DCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEI 246 (308)
T ss_pred HHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhc-chhcCccccChHHHHHHHHHHHHhc-cCCHHHH
Confidence 4433332211 0001111 234444445555567777777776 3 221112224455666666553 3555554
Q ss_pred HHH
Q 010202 398 FHV 400 (515)
Q Consensus 398 ~~~ 400 (515)
-++
T Consensus 247 ~kv 249 (308)
T KOG1585|consen 247 KKV 249 (308)
T ss_pred HHH
Confidence 433
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.17 E-value=3.8 Score=39.52 Aligned_cols=95 Identities=9% Similarity=0.050 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHH
Q 010202 377 DTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPN-VQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYT 455 (515)
Q Consensus 377 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~ 455 (515)
|......+..+....++++.|..+|++....+ || ..+|......+...|+.++|. +.+++..+..+...-.....
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~---Pn~A~~~~~~~~~~~~~G~~~~a~-~~i~~alrLsP~~~~~~~~~ 412 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHS---TDIASLYYYRALVHFHNEKIEEAR-ICIDKSLQLEPRRRKAVVIK 412 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC---CccHHHHHHHHHHHHHcCCHHHHH-HHHHHHhccCchhhHHHHHH
Confidence 45555555555555666777777777766633 44 334444445556667777766 66666544222222233333
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 010202 456 LVIHGLCRANKCEWAYLLFKE 476 (515)
Q Consensus 456 ~li~~~~~~g~~~~A~~~~~~ 476 (515)
..++.|+..+ .++|++++-+
T Consensus 413 ~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 413 ECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHHHcCCc-hhhhHHHHhh
Confidence 3444555443 5556655543
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.03 E-value=2.8 Score=38.51 Aligned_cols=129 Identities=16% Similarity=0.243 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH--cC----CHHHHHHHHHHhhcC----CCCChhhHHHHHHHHHccCCh
Q 010202 184 WEDAVRTFDELGTFGLEKNTETMNLLLDTLCK--EG----KVELARSVFLELKSC----IPPNAHTFNIFIHGWCKINRV 253 (515)
Q Consensus 184 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~ 253 (515)
+++.+.+++.|.+.|+.-+..+|-+..-.... .. ....+..+|+.|++. ..++..++..++.. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34566788888998888888777654433333 22 255678888888764 23445555555444 33332
Q ss_pred ----hHHHHHHHHHHhCCCCccH--hHHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010202 254 ----DEAQWTIQEMKGHGCHPCV--ISYSTIIQSYCRQYN--FSKVYELLDEMQAQGCPPNVVTYTTVM 314 (515)
Q Consensus 254 ----~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~~~~~~~~~li 314 (515)
+.++..|+.+.+.|+..+- .....++........ ..++.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 4566677777776655432 222223322221111 346777777787777777666655443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.01 E-value=2.6 Score=37.47 Aligned_cols=106 Identities=14% Similarity=0.197 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHH
Q 010202 306 NVVTYTTVMSYLAK-----SGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTST 380 (515)
Q Consensus 306 ~~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 380 (515)
|..+|...+..+.. .+.++-....++.|.+.|+.-|..+|+.|+..+-+ ..+.|...
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK-----------------gkfiP~nv- 127 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK-----------------GKFIPQNV- 127 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc-----------------cccccHHH-
Confidence 44555555554432 34455556667777777888888888777764322 22222211
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHH
Q 010202 381 FNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDE 432 (515)
Q Consensus 381 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 432 (515)
+-...-.|- .+-+-+++++++|...| +.||..+-..|+.++.+.+-.-.
T Consensus 128 fQ~~F~HYP--~QQ~C~I~vLeqME~hG-VmPdkE~e~~lvn~FGr~~~p~~ 176 (406)
T KOG3941|consen 128 FQKVFLHYP--QQQNCAIKVLEQMEWHG-VMPDKEIEDILVNAFGRWNFPTK 176 (406)
T ss_pred HHHHHhhCc--hhhhHHHHHHHHHHHcC-CCCchHHHHHHHHHhccccccHH
Confidence 111111111 22344677777777777 77777777777777766665443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.82 E-value=3.5 Score=34.62 Aligned_cols=95 Identities=13% Similarity=0.141 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHH--H
Q 010202 135 EIYEMMVDILGKVRQMDQMRALLEEMSKGHIV---TLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKN-TETMN--L 208 (515)
Q Consensus 135 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~--~ 208 (515)
..+..+.+.|.+.|+.+.|.+.|.++...... ..+.+..+++.....+++..+.....+....--.+. ...-+ .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 56778888999999999999999988775542 345556678888888888888888777654322221 11111 1
Q ss_pred HHH--HHHHcCCHHHHHHHHHHh
Q 010202 209 LLD--TLCKEGKVELARSVFLEL 229 (515)
Q Consensus 209 ll~--~~~~~~~~~~a~~~~~~~ 229 (515)
+.. .+...+++..|-+.|-..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 111 223456777777777664
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.2 Score=30.72 Aligned_cols=17 Identities=12% Similarity=0.180 Sum_probs=6.2
Q ss_pred HHHHcCCHHHHHHHHHH
Q 010202 212 TLCKEGKVELARSVFLE 228 (515)
Q Consensus 212 ~~~~~~~~~~a~~~~~~ 228 (515)
.|...|++++|+++|++
T Consensus 10 ~~~~~G~~~~A~~~~~~ 26 (44)
T PF13428_consen 10 AYRRLGQPDEAERLLRR 26 (44)
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 33333333333333333
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.76 E-value=1.5 Score=33.91 Aligned_cols=90 Identities=11% Similarity=-0.017 Sum_probs=41.1
Q ss_pred HHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCH
Q 010202 247 WCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNV---VTYTTVMSYLAKSGDF 323 (515)
Q Consensus 247 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~ 323 (515)
++..|+++.|++.|.+....- +.....||.-..++.-.|+.++|++=+++..+..-.-+. .+|.--...|...|+.
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 344455555555555544331 223444555555555555555555555544432111111 1222222334455566
Q ss_pred HHHHHHHHHHHhcC
Q 010202 324 EEAIRITEKMKIVG 337 (515)
Q Consensus 324 ~~a~~~~~~~~~~~ 337 (515)
+.|..=|....+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66665555555444
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.73 E-value=1.7 Score=33.68 Aligned_cols=90 Identities=13% Similarity=0.033 Sum_probs=44.0
Q ss_pred HHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccH---hHHHHHHHHHHhcCChh
Q 010202 213 LCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCV---ISYSTIIQSYCRQYNFS 289 (515)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~ 289 (515)
++..|+.+.|++.|.+...-.|.+...||.-..++.-.|+.++|++-+++..+..-..+. .+|..-...|...|+-+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 445555555555555544444555555555555555555555555555555443111111 12222223344455555
Q ss_pred HHHHHHHHHHHCC
Q 010202 290 KVYELLDEMQAQG 302 (515)
Q Consensus 290 ~A~~~~~~m~~~g 302 (515)
.|..=|+..-+.|
T Consensus 133 ~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 133 AARADFEAAAQLG 145 (175)
T ss_pred HHHHhHHHHHHhC
Confidence 5555555554443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.49 E-value=3.2 Score=38.34 Aligned_cols=45 Identities=4% Similarity=0.011 Sum_probs=21.0
Q ss_pred ccCChhHHHHHHHHHHhCC--CCccHhHHHHHHHHHHhcCChhHHHH
Q 010202 249 KINRVDEAQWTIQEMKGHG--CHPCVISYSTIIQSYCRQYNFSKVYE 293 (515)
Q Consensus 249 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~ 293 (515)
...+.++|+..+.+-..+- ..--..++..+..+.++.|.+++++.
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 4455555555555443320 00112344555555556665555544
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.32 E-value=8.5 Score=37.46 Aligned_cols=24 Identities=8% Similarity=0.039 Sum_probs=11.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHH
Q 010202 381 FNTMITMFSHHGHHEKAFHVLEEM 404 (515)
Q Consensus 381 ~~~li~~~~~~g~~~~A~~~~~~m 404 (515)
...|+.++...+.+.++..++.+-
T Consensus 298 renLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 298 RENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHh
Confidence 334444444444444444444443
|
The molecular function of this protein is uncertain. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.26 E-value=1 Score=40.49 Aligned_cols=76 Identities=9% Similarity=0.056 Sum_probs=37.1
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 010202 240 FNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQA-----QGCPPNVVTYTTVM 314 (515)
Q Consensus 240 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~~~li 314 (515)
+..++..+..+|+.+.+...++++.... +-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+.....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 3444444555555555555555554443 33444555555555555555555555544433 34555554444444
Q ss_pred HH
Q 010202 315 SY 316 (515)
Q Consensus 315 ~~ 316 (515)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 43
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.12 E-value=3.7 Score=32.72 Aligned_cols=61 Identities=20% Similarity=0.255 Sum_probs=27.0
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCC-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCC
Q 010202 389 SHHGHHEKAFHVLEEMNKLEHCKP-NVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLD 450 (515)
Q Consensus 389 ~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~ 450 (515)
.+.|++++|.+.|+.+...-+..| ....-..++.++.+.|++++|+ ..+++.++.++-.|+
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~-a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAI-AAYDRFIRLHPTHPN 82 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHH-HHHHHHHHhCCCCCC
Confidence 344555555555555544320000 1223344445555555555555 555555554443333
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=93.09 E-value=1.8 Score=31.81 Aligned_cols=60 Identities=12% Similarity=0.180 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 010202 186 DAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIH 245 (515)
Q Consensus 186 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 245 (515)
+..+-++.+....+.|++....+.+++|.+.+++..|.++++.++....+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 666777788888889999999999999999999999999999887655555546766654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.08 E-value=3.4 Score=37.75 Aligned_cols=152 Identities=9% Similarity=-0.077 Sum_probs=107.9
Q ss_pred HHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH--HHH--HHHHHHHHHcCCH
Q 010202 144 LGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNT--ETM--NLLLDTLCKEGKV 219 (515)
Q Consensus 144 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~--~~ll~~~~~~~~~ 219 (515)
+-..|+..+|-..++++.+..|.+.-+....=.++..+|+.+.-...++++... ..+|. .+| ..+.-++..+|-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 445788889999999998888766666655567888899999888888887653 12333 223 3334455678999
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCC----CccHhHHHHHHHHHHhcCChhHHHHHH
Q 010202 220 ELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGC----HPCVISYSTIIQSYCRQYNFSKVYELL 295 (515)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~ 295 (515)
++|++.-++..+-.+.|...-.++.+.+--.|+..++.+...+-...-- .....-|.. .-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~-Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHT-ALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHH-HHhhhcccchhHHHHHH
Confidence 9999998886665677888888999999999999999988776543210 001111222 23455678999999999
Q ss_pred HH
Q 010202 296 DE 297 (515)
Q Consensus 296 ~~ 297 (515)
+.
T Consensus 271 D~ 272 (491)
T KOG2610|consen 271 DR 272 (491)
T ss_pred HH
Confidence 86
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.94 E-value=5.7 Score=34.44 Aligned_cols=96 Identities=19% Similarity=0.148 Sum_probs=41.8
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHhC-CCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010202 237 AHTFNIFIHGWCKINRVDEAQWTIQEMKGH-GCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMS 315 (515)
Q Consensus 237 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 315 (515)
...+......+...+.+..+...+...... ........+......+...+++..+.+.+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 344444445555555555555555544431 112233344444444444555555555555554432221 111111111
Q ss_pred -HHHhcCCHHHHHHHHHHH
Q 010202 316 -YLAKSGDFEEAIRITEKM 333 (515)
Q Consensus 316 -~~~~~g~~~~a~~~~~~~ 333 (515)
.+...|+++.+...+.+.
T Consensus 138 ~~~~~~~~~~~a~~~~~~~ 156 (291)
T COG0457 138 GALYELGDYEEALELYEKA 156 (291)
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 344555555555555554
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.88 E-value=4.6 Score=33.19 Aligned_cols=125 Identities=13% Similarity=0.135 Sum_probs=75.5
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHhhcC-CCCChh-hHHH--HHHHHHccC
Q 010202 177 RFSGAGQWEDAVRTFDELGTFGLEKNTE-TMNLLLDTLCKEGKVELARSVFLELKSC-IPPNAH-TFNI--FIHGWCKIN 251 (515)
Q Consensus 177 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~-~~~~--li~~~~~~g 251 (515)
-+++.+..++|+.-|..+.+.|...-+. ............|+...|...|+++... ..|-.. -..- -.-.+...|
T Consensus 67 ~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 67 KLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccc
Confidence 3567788899999999998887543222 2223344566778888888888886532 122211 1111 112345567
Q ss_pred ChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 010202 252 RVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQ 301 (515)
Q Consensus 252 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 301 (515)
.++......+.+...+-+.-...-..|.-+-.+.|++.+|.++|..+...
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 77777776666655443333344455666666777777777777776653
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.84 E-value=8 Score=35.87 Aligned_cols=46 Identities=13% Similarity=0.155 Sum_probs=28.8
Q ss_pred HHcCCHHHHHHHHHH-hhc--CCCCChhhHHHHHHHHHccCChhHHHHH
Q 010202 214 CKEGKVELARSVFLE-LKS--CIPPNAHTFNIFIHGWCKINRVDEAQWT 259 (515)
Q Consensus 214 ~~~~~~~~a~~~~~~-~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~ 259 (515)
....+.++|+..+.. +.+ .....-.++..+..+.++.|.+++++..
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~ 65 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKF 65 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHH
Confidence 356677888877776 322 1223345667777777777877776543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.80 E-value=11 Score=37.43 Aligned_cols=130 Identities=12% Similarity=0.080 Sum_probs=87.2
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 010202 136 IYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCK 215 (515)
Q Consensus 136 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 215 (515)
.++.+|.---.....+.++.+++.+....|....-+......-.+.|..+.+.++|++-.. |++.+...|...+..+..
T Consensus 47 ~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n 125 (577)
T KOG1258|consen 47 AWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKN 125 (577)
T ss_pred chHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhc
Confidence 4444444333334456677777777777776555555446666777888888888888776 456677777766665554
Q ss_pred -cCCHHHHHHHHHHhhcC---CCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 010202 216 -EGKVELARSVFLELKSC---IPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGH 266 (515)
Q Consensus 216 -~~~~~~a~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 266 (515)
.|+.+.....|+....- .-.....|...|..-..++++.....++++..+.
T Consensus 126 ~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 126 NNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred cCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 46777777788775432 1234556777777777888888888888888864
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.72 E-value=4.9 Score=33.14 Aligned_cols=37 Identities=11% Similarity=0.104 Sum_probs=17.3
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010202 329 ITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVY 365 (515)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 365 (515)
+++.+.+.+++|+...+..+++.+.+.|++.....++
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll 52 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL 52 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3333444444455555555555555555444444443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.71 E-value=6.7 Score=34.63 Aligned_cols=186 Identities=14% Similarity=0.067 Sum_probs=108.5
Q ss_pred cCCHHHHHHHHHHhh-hCHHHHHHHHHHhccCCCC-CCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHH-HHH
Q 010202 97 QPSHYLVNKLIHRFK-DDWKSALGIFRWAGSCPGY-EHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNT-IAK 173 (515)
Q Consensus 97 ~p~~~~~~~ll~~~~-~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~ 173 (515)
.|-...|+..+..+. +++..|...|+.+..++.+ +....+.-.++-++-+.+++++|+..+++.....+.+.++ +..
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 366778888888776 6999999999999755443 4466777788888999999999999999998876643332 111
Q ss_pred HHHHHHh-------cCCHH---HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHH
Q 010202 174 VMRRFSG-------AGQWE---DAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIF 243 (515)
Q Consensus 174 li~~~~~-------~g~~~---~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 243 (515)
-+.+++. ..+.. +|..-|+++... -||+ .-...|..-...+...+ ...=-.+
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS-------------~Ya~dA~~~i~~~~d~L---A~~Em~I 173 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR--YPNS-------------RYAPDAKARIVKLNDAL---AGHEMAI 173 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHH--CCCC-------------cchhhHHHHHHHHHHHH---HHHHHHH
Confidence 1444432 12222 333333333332 1221 11122222222111100 0001134
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCccH---hHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 010202 244 IHGWCKINRVDEAQWTIQEMKGHGCHPCV---ISYSTIIQSYCRQYNFSKVYELLDEMQAQ 301 (515)
Q Consensus 244 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 301 (515)
.+.|.+.|.+..|..-+++|.+. .+-+. ..+-.+..+|.+.|-.++|.+.-.-+...
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 56677777777777777777765 22222 33455667777777777777665555443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.64 E-value=3.2 Score=34.91 Aligned_cols=62 Identities=13% Similarity=0.249 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010202 274 SYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPN--VVTYTTVMSYLAKSGDFEEAIRITEKMKI 335 (515)
Q Consensus 274 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 335 (515)
.+..+...|++.|+.++|++.|.++.+....+. ...+-.+|....-.+++..+.....+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345555556666666666666666555432222 22344455555555666665555555443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.58 E-value=6.1 Score=33.84 Aligned_cols=161 Identities=9% Similarity=0.038 Sum_probs=89.6
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 010202 133 SSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDT 212 (515)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 212 (515)
-+.++|.|.-.+...|+++.|.+.|+...+-++...-+...-.-++.-.|++.-|.+-|...-..+ +.|+ |.++---
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D-~~DP--fR~LWLY 174 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD-PNDP--FRSLWLY 174 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcC-CCCh--HHHHHHH
Confidence 468899999999999999999999999988888654444333344455788988888777776543 2233 2222111
Q ss_pred H-HHcCCHHHHHHHHHHhhcCCCCChhhHHHHH-HHHHccCChhHHHHHHHHHHhCCCC------ccHhHHHHHHHHHHh
Q 010202 213 L-CKEGKVELARSVFLELKSCIPPNAHTFNIFI-HGWCKINRVDEAQWTIQEMKGHGCH------PCVISYSTIIQSYCR 284 (515)
Q Consensus 213 ~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~~li~~~~~ 284 (515)
+ -..-+..+|..-+.+--.+ .|..-|..-| ..|. |++. ...++++++...-. .=..||--+..-+..
T Consensus 175 l~E~k~dP~~A~tnL~qR~~~--~d~e~WG~~iV~~yL--gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~ 249 (297)
T COG4785 175 LNEQKLDPKQAKTNLKQRAEK--SDKEQWGWNIVEFYL--GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLS 249 (297)
T ss_pred HHHhhCCHHHHHHHHHHHHHh--ccHhhhhHHHHHHHH--hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhc
Confidence 1 1223455565544431112 2333333322 2222 2211 12233333321100 013456666777777
Q ss_pred cCChhHHHHHHHHHHHC
Q 010202 285 QYNFSKVYELLDEMQAQ 301 (515)
Q Consensus 285 ~g~~~~A~~~~~~m~~~ 301 (515)
.|+.++|..+|+-....
T Consensus 250 ~G~~~~A~~LfKLaian 266 (297)
T COG4785 250 LGDLDEATALFKLAVAN 266 (297)
T ss_pred cccHHHHHHHHHHHHHH
Confidence 77777777777766654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.29 E-value=16 Score=37.97 Aligned_cols=144 Identities=16% Similarity=0.147 Sum_probs=85.8
Q ss_pred HHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 010202 139 MMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGK 218 (515)
Q Consensus 139 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 218 (515)
.-.+.+-+.|++++|...+-+.. +...+... +.-|....+..+-..+++.+.+.|+. +...-..|+.+|.+.++
T Consensus 373 kYgd~Ly~Kgdf~~A~~qYI~tI--~~le~s~V---i~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd 446 (933)
T KOG2114|consen 373 KYGDYLYGKGDFDEATDQYIETI--GFLEPSEV---IKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKD 446 (933)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHc--ccCChHHH---HHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcc
Confidence 33455567899999887775432 23333332 67777777788888888888888854 44555668889999888
Q ss_pred HHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 010202 219 VELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEM 298 (515)
Q Consensus 219 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 298 (515)
.+.-.+..+....|.- ..-....+..+.+.+-.++|..+-.+... .......+ +-..+++++|++++..+
T Consensus 447 ~~kL~efI~~~~~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 447 VEKLTEFISKCDKGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred hHHHHHHHhcCCCcce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 8877666655432211 11134455666666666666655554433 22222222 22346666666665543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.12 E-value=7.3 Score=33.73 Aligned_cols=221 Identities=17% Similarity=0.175 Sum_probs=125.3
Q ss_pred CCHHHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc--CCCCChhhHHHHHHHHHccCChhHHHH
Q 010202 182 GQWEDAVRTFDELGTFGLE-KNTETMNLLLDTLCKEGKVELARSVFLELKS--CIPPNAHTFNIFIHGWCKINRVDEAQW 258 (515)
Q Consensus 182 g~~~~A~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~ 258 (515)
+....+...+......... .....+......+...+.+..+...+..... ..+.....+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4444555555554443211 1245555566666677777777766666432 344555666666666677777777777
Q ss_pred HHHHHHhCCCCccHhHHHHHHH-HHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010202 259 TIQEMKGHGCHPCVISYSTIIQ-SYCRQYNFSKVYELLDEMQAQGC--PPNVVTYTTVMSYLAKSGDFEEAIRITEKMKI 335 (515)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 335 (515)
.+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+....+
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 777776643222 122222223 67778888888888887754211 11233333344445566777777777777766
Q ss_pred cCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010202 336 VGSKP-DSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPD-TSTFNTMITMFSHHGHHEKAFHVLEEMNKL 407 (515)
Q Consensus 336 ~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 407 (515)
.. .. ....+..+...+...++++.|...+. ..... .|+ ...+..+...+...+..+++...+.+....
T Consensus 196 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 196 LN-PDDDAEALLNLGLLYLKLGKYEEALEYYE-KALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hC-cccchHHHHHhhHHHHHcccHHHHHHHHH-HHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 53 22 35566666666667777777777776 33332 222 233333333344555677777777766663
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.01 E-value=5.8 Score=32.31 Aligned_cols=13 Identities=23% Similarity=0.414 Sum_probs=5.1
Q ss_pred cCChhHHHHHHHH
Q 010202 285 QYNFSKVYELLDE 297 (515)
Q Consensus 285 ~g~~~~A~~~~~~ 297 (515)
.|+|++|+.+|++
T Consensus 57 r~~w~dA~rlLr~ 69 (160)
T PF09613_consen 57 RGDWDDALRLLRE 69 (160)
T ss_pred hCCHHHHHHHHHH
Confidence 3333333333333
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.89 E-value=6.3 Score=32.51 Aligned_cols=134 Identities=13% Similarity=0.102 Sum_probs=77.2
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 010202 188 VRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPN-AHTFNIFIHGWCKINRVDEAQWTIQEMKGH 266 (515)
Q Consensus 188 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 266 (515)
++.++.+.+.+++|+...+..+++.+.+.|++....+++.. ++-+| ...-..|+..- +....+.++=-.|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~---~Vi~DSk~lA~~LLs~~---~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY---HVIPDSKPLACQLLSLG---NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh---cccCCcHHHHHHHHHhH---ccChHHHHHHHHHHHH
Confidence 35556666778888888888888888888887766555543 22233 33333333221 2223333333333322
Q ss_pred CCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010202 267 GCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKI 335 (515)
Q Consensus 267 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 335 (515)
=...+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..+++-..+
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0113566777778888888888887765322 222234566676677776665556555544
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.97 Score=40.66 Aligned_cols=100 Identities=20% Similarity=0.216 Sum_probs=73.9
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 010202 128 PGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGH----IVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNT 203 (515)
Q Consensus 128 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 203 (515)
.|.+.++.+...++..-....++++++..+-.+...- .+.|..+. .++ ++-.-++++++.++..=+..|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~-~ir-lllky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHT-WIR-LLLKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHH-HHH-HHHccChHHHHHHHhCcchhccccch
Confidence 4556666667777777777788888888887775421 23444442 233 33445677999999888899999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh
Q 010202 204 ETMNLLLDTLCKEGKVELARSVFLEL 229 (515)
Q Consensus 204 ~~~~~ll~~~~~~~~~~~a~~~~~~~ 229 (515)
++++.+++.+.+.+++.+|.++.-.+
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 99999999999999999888887763
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=91.66 E-value=3.9 Score=29.83 Aligned_cols=63 Identities=11% Similarity=0.149 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 010202 183 QWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIH 245 (515)
Q Consensus 183 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 245 (515)
+.-++.+-++.+....+.|++....+.+++|-+.+++..|.++++.++.....+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHH
Confidence 344666777777777888999999999999999999999999998877554445556665543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.52 E-value=0.46 Score=27.54 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=12.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH
Q 010202 275 YSTIIQSYCRQYNFSKVYELLDE 297 (515)
Q Consensus 275 ~~~li~~~~~~g~~~~A~~~~~~ 297 (515)
|..|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555555555555555555
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=91.49 E-value=11 Score=34.48 Aligned_cols=60 Identities=10% Similarity=0.018 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhch
Q 010202 309 TYTTVMSYLAKSGDFE---EAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMP 370 (515)
Q Consensus 309 ~~~~li~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 370 (515)
++..++.+|...+..+ .|..+++.+.... +..+.++-.-+..+.+.++.+++.+++. .|.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~-~mi 148 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILM-RMI 148 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHH-HHH
Confidence 3444455555544433 2333444443321 1123333333444444555666665555 443
|
It is also involved in sporulation []. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.47 E-value=0.24 Score=28.34 Aligned_cols=26 Identities=12% Similarity=0.213 Sum_probs=11.1
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010202 162 KGHIVTLNTIAKVMRRFSGAGQWEDA 187 (515)
Q Consensus 162 ~~~~~~~~~~~~li~~~~~~g~~~~A 187 (515)
+.+|.++.++..+...|...|++++|
T Consensus 7 e~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 7 ELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 33344444444444444444444443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.27 E-value=0.53 Score=27.29 Aligned_cols=26 Identities=8% Similarity=0.004 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010202 453 TYTLVIHGLCRANKCEWAYLLFKEMI 478 (515)
Q Consensus 453 ~~~~li~~~~~~g~~~~A~~~~~~m~ 478 (515)
+|..|...|.+.|++++|++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35677778888888888888887754
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.79 E-value=7.9 Score=31.56 Aligned_cols=64 Identities=22% Similarity=0.209 Sum_probs=40.6
Q ss_pred HHHHHHHHHHH---HcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 010202 134 SEIYEMMVDIL---GKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTF 197 (515)
Q Consensus 134 ~~~~~~li~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 197 (515)
..+.+.||+.+ .+.++.+++..+++.+..-.|.....-..-...+.+.|+|.+|+++|+++.+.
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 33444444433 45677888888888876655543333333356677788888888888887664
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.60 E-value=1.9 Score=38.88 Aligned_cols=103 Identities=16% Similarity=0.189 Sum_probs=63.5
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCC---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC
Q 010202 336 VGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENG---VAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKP 412 (515)
Q Consensus 336 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 412 (515)
.|.+.+..+...++..-....+++++...+- .+.... ..|+.. -.+.++-+. .-++++++.++..=++-| +-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~Ly-KlRhs~~a~~~~~~~-~~~~irlll-ky~pq~~i~~l~npIqYG-iF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLY-KLRHSPNAWYLRNWT-IHTWIRLLL-KYDPQKAIYTLVNPIQYG-IFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHH-HHhcCcchhhhcccc-HHHHHHHHH-ccChHHHHHHHhCcchhc-ccc
Confidence 3445555666666666666677777777665 443311 111111 122233333 336777887777777777 788
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010202 413 NVQTFHPLLKSCFKTGKTDECLSQLLDDMVN 443 (515)
Q Consensus 413 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 443 (515)
|..+++.+++.+.+.+++.+|. ++...|+.
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa-~vvt~~~~ 163 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAA-SVVTEVMM 163 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHH-HHHHHHHH
Confidence 8888888888888888888877 66655554
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.45 E-value=0.69 Score=26.19 Aligned_cols=28 Identities=11% Similarity=0.211 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010202 379 STFNTMITMFSHHGHHEKAFHVLEEMNK 406 (515)
Q Consensus 379 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 406 (515)
..|..+..+|...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566677777777777777777777766
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.12 E-value=15 Score=33.80 Aligned_cols=22 Identities=9% Similarity=0.197 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhCCCCCCCHHhHH
Q 010202 396 KAFHVLEEMNKLEHCKPNVQTFH 418 (515)
Q Consensus 396 ~A~~~~~~m~~~~~~~p~~~~~~ 418 (515)
++.++++.+.+.| +++....|.
T Consensus 200 r~~~l~~~l~~~~-~kik~~~yp 221 (297)
T PF13170_consen 200 RVIELYNALKKNG-VKIKYMHYP 221 (297)
T ss_pred HHHHHHHHHHHcC-Ccccccccc
Confidence 4555555555555 555444443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.91 E-value=0.86 Score=25.78 Aligned_cols=28 Identities=11% Similarity=0.115 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010202 452 TTYTLVIHGLCRANKCEWAYLLFKEMIG 479 (515)
Q Consensus 452 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 479 (515)
..|..+..++...|++++|+..+++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566667777777777777777777764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=89.69 E-value=1.5 Score=31.85 Aligned_cols=59 Identities=14% Similarity=0.182 Sum_probs=42.5
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010202 436 QLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEV 496 (515)
Q Consensus 436 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 496 (515)
+-++.+.. +.+.|++....+-+++|.|.+++.-|.++++-...+ ...+..+|..+++-.
T Consensus 28 r~mN~l~~-~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lqei 86 (103)
T cd00923 28 RGLNNLFG-YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQEI 86 (103)
T ss_pred HHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHHHH
Confidence 44455545 667889999999999999999999999999877642 233455676666543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.48 E-value=13 Score=31.98 Aligned_cols=80 Identities=14% Similarity=-0.005 Sum_probs=40.5
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010202 220 ELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQ 299 (515)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 299 (515)
..|.--|.+...-.|.-+.+||.|.--+...|+++.|.+.|+...+....-+-...|--|.. .--|++.-|.+=+...-
T Consensus 82 ~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LAq~d~~~fY 160 (297)
T COG4785 82 ALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLAQDDLLAFY 160 (297)
T ss_pred HHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhhHHHHHHHH
Confidence 33333344332333445666777777777777777777777777665322122222222222 22466666665554444
Q ss_pred H
Q 010202 300 A 300 (515)
Q Consensus 300 ~ 300 (515)
+
T Consensus 161 Q 161 (297)
T COG4785 161 Q 161 (297)
T ss_pred h
Confidence 3
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.17 E-value=6.2 Score=39.15 Aligned_cols=150 Identities=16% Similarity=0.183 Sum_probs=103.6
Q ss_pred cCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 010202 146 KVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSV 225 (515)
Q Consensus 146 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~ 225 (515)
-.|+++.|..++..+++ +....++..+-+.|..++|+++- +|+.. -.....+.|+++.|.++
T Consensus 598 mrrd~~~a~~vLp~I~k------~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~l 659 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK------EIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDL 659 (794)
T ss_pred hhccccccccccccCch------hhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHH
Confidence 35778888776665542 23334456677788888888752 33322 12345577899999888
Q ss_pred HHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 010202 226 FLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPP 305 (515)
Q Consensus 226 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 305 (515)
..+. .+..-|..|.++..+.+++..|.+.|....+ |..|+-.+...|+-+....+-....+.|..
T Consensus 660 a~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~- 724 (794)
T KOG0276|consen 660 AVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN- 724 (794)
T ss_pred HHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-
Confidence 7664 3566799999999999999999999987764 566777777788877666666666666633
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010202 306 NVVTYTTVMSYLAKSGDFEEAIRITEKM 333 (515)
Q Consensus 306 ~~~~~~~li~~~~~~g~~~~a~~~~~~~ 333 (515)
|. ..-+|...|+++++.+++..-
T Consensus 725 N~-----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 725 NL-----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ch-----HHHHHHHcCCHHHHHHHHHhc
Confidence 32 234566789999988877654
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=88.87 E-value=14 Score=31.50 Aligned_cols=79 Identities=16% Similarity=0.125 Sum_probs=49.0
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh----cCCCCChhhHHHHHHHHHccCC
Q 010202 177 RFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELK----SCIPPNAHTFNIFIHGWCKINR 252 (515)
Q Consensus 177 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~li~~~~~~g~ 252 (515)
...+.|+ ++|.+.|-.+...+.--++.....|...|. ..+.+++++++.+.. .+..+|+..+.+|+..+.+.|+
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 3344444 567777777777665555555555554444 566777777776622 1235667777777777777777
Q ss_pred hhHHH
Q 010202 253 VDEAQ 257 (515)
Q Consensus 253 ~~~A~ 257 (515)
++.|.
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 77664
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.73 E-value=1.2 Score=25.09 Aligned_cols=27 Identities=11% Similarity=0.140 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010202 453 TYTLVIHGLCRANKCEWAYLLFKEMIG 479 (515)
Q Consensus 453 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 479 (515)
.|..+...+...|++++|.+.+++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455666677777777777777777664
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.59 E-value=28 Score=34.77 Aligned_cols=398 Identities=10% Similarity=0.090 Sum_probs=191.3
Q ss_pred ChhhHHHHHHHhcCCCCHHH---HHHHhhccccCCCCcCCHHHHHHHHHHhh------hCHHHHHHHHHHhccCCCCCCC
Q 010202 63 RLPDIDVIISKVHVGSSEDE---VFQSLKQDHVCNAIQPSHYLVNKLIHRFK------DDWKSALGIFRWAGSCPGYEHS 133 (515)
Q Consensus 63 ~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~g~~p~~~~~~~ll~~~~------~~~~~a~~~~~~~~~~~~~~~~ 133 (515)
+..-|+.+|.........+. ++..+. +-.|..+-| ...++ +..+.+..+|+.+. .|++.+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL------~kyPl~~gy---W~kfA~~E~klg~~~~s~~Vfergv--~aip~S 112 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFL------SKYPLCYGY---WKKFADYEYKLGNAENSVKVFERGV--QAIPLS 112 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHH------hhCccHHHH---HHHHHHHHHHhhhHHHHHHHHHHHH--HhhhhH
Confidence 44568888877655555533 333333 223433322 23332 36678899999986 578888
Q ss_pred HHHHHHHHHHHHc-CCChHHHHHHHHHHhcCC---C---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 010202 134 SEIYEMMVDILGK-VRQMDQMRALLEEMSKGH---I---VTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETM 206 (515)
Q Consensus 134 ~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~---~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 206 (515)
...|...+..+.. .|+.+..++.|+....-. . +-|..| |..-..++++.....++++.++... ..|
T Consensus 113 vdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdky---ie~en~qks~k~v~~iyeRileiP~----~~~ 185 (577)
T KOG1258|consen 113 VDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKY---IEFENGQKSWKRVANIYERILEIPL----HQL 185 (577)
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHH---HHHHhccccHHHHHHHHHHHHhhhh----hHh
Confidence 8888888776654 678888999998886622 2 345555 6666788999999999999987421 112
Q ss_pred HHHHHHH---HHc------CCHHHHHHHHHHhhcC-----CCCChhhHHHHHHHH-HccCChhHHHHHHHHHHhCCCCcc
Q 010202 207 NLLLDTL---CKE------GKVELARSVFLELKSC-----IPPNAHTFNIFIHGW-CKINRVDEAQWTIQEMKGHGCHPC 271 (515)
Q Consensus 207 ~~ll~~~---~~~------~~~~~a~~~~~~~~~~-----~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~~~~~~~~~~ 271 (515)
+..-.-| .+. ...+++.++-...... ..+....+..-+.-- ...+..+++.....+...
T Consensus 186 ~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~------ 259 (577)
T KOG1258|consen 186 NRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS------ 259 (577)
T ss_pred HHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH------
Confidence 2222211 111 1233333322221100 001111111111100 001111122111111110
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHHCC---C----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH
Q 010202 272 VISYSTIIQSYCRQYNFSKVYELLDEMQAQG---C----PPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRF 344 (515)
Q Consensus 272 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 344 (515)
..-..+-......+....++.-.+.- + .++..+|...+.--.+.|+.+.+.-+|+...-.- ..=...
T Consensus 260 -----~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~ef 333 (577)
T KOG1258|consen 260 -----IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEF 333 (577)
T ss_pred -----HHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHH
Confidence 00011111222223333333322211 1 1234566667777777788877777777765321 111222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhchhCCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHh-HHHHH
Q 010202 345 FNCLIYTLGRASRVQEAVYVYQVEMPENGV--APDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQT-FHPLL 421 (515)
Q Consensus 345 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~-~~~ll 421 (515)
|--.+.-....|+.+-|..++. .-.+--. .|....+.+.+. -..|++..|..+++.+.+. . |+... -..-+
T Consensus 334 Wiky~~~m~~~~~~~~~~~~~~-~~~~i~~k~~~~i~L~~a~f~--e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~ 407 (577)
T KOG1258|consen 334 WIKYARWMESSGDVSLANNVLA-RACKIHVKKTPIIHLLEARFE--ESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKI 407 (577)
T ss_pred HHHHHHHHHHcCchhHHHHHHH-hhhhhcCCCCcHHHHHHHHHH--HhhccHHHHHHHHHHHHhh--C-CchhhhHHHHH
Confidence 3333333334477777776664 2222111 223333333322 2357888888888887764 3 55332 22223
Q ss_pred HHHHhcCChHHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010202 422 KSCFKTGKTDECLSQLLDDMVNK-HHLSLDITTYTLVIHG-----LCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDE 495 (515)
Q Consensus 422 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~p~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 495 (515)
....+.|+.+.+. . ..++.+. ....-+......+.-- +.-.++.+.|..++.++.+ -++++...|..++.-
T Consensus 408 ~~e~r~~~~~~~~-~-~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~-~~~~~k~~~~~~~~~ 484 (577)
T KOG1258|consen 408 NWERRKGNLEDAN-Y-KNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEAND-ILPDCKVLYLELIRF 484 (577)
T ss_pred hHHHHhcchhhhh-H-HHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh-cCCccHHHHHHHHHH
Confidence 3344566666543 2 2222210 1111121122222211 2234777888888888876 345666667777666
Q ss_pred HHhc
Q 010202 496 VKQK 499 (515)
Q Consensus 496 ~~~~ 499 (515)
+..+
T Consensus 485 ~~~~ 488 (577)
T KOG1258|consen 485 ELIQ 488 (577)
T ss_pred HHhC
Confidence 5443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=88.55 E-value=11 Score=30.17 Aligned_cols=17 Identities=24% Similarity=0.278 Sum_probs=7.8
Q ss_pred ccCChhHHHHHHHHHHh
Q 010202 249 KINRVDEAQWTIQEMKG 265 (515)
Q Consensus 249 ~~g~~~~A~~~~~~~~~ 265 (515)
..|++++|.++|+++.+
T Consensus 56 ~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 56 ARGNYDEAARILRELLS 72 (153)
T ss_pred HcCCHHHHHHHHHhhhc
Confidence 44444444444444443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=88.52 E-value=20 Score=32.86 Aligned_cols=234 Identities=8% Similarity=0.001 Sum_probs=122.8
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCCh----hHHHHHHHHHHHCCCCCCHHHH
Q 010202 235 PNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNF----SKVYELLDEMQAQGCPPNVVTY 310 (515)
Q Consensus 235 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~~~~~~~ 310 (515)
+|..+....+..+...|. +++...+..+... +|...-...+.++.+.|+. +++...+..+... .++...-
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 444455555555555553 2333333333332 2444444455555555542 3456666555332 3444444
Q ss_pred HHHHHHHHhcCCH-----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHH
Q 010202 311 TTVMSYLAKSGDF-----EEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMI 385 (515)
Q Consensus 311 ~~li~~~~~~g~~-----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 385 (515)
...+.++...+.. ..+...+.... ..++..+-...+.++++.++.+ +...+. .+.. .+|...-...+
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~---~D~~~~VR~~a~~aLg~~~~~~-ai~~L~-~~L~---d~~~~VR~~A~ 180 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITA---FDKSTNVRFAVAFALSVINDEA-AIPLLI-NLLK---DPNGDVRNWAA 180 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHh---hCCCHHHHHHHHHHHhccCCHH-HHHHHH-HHhc---CCCHHHHHHHH
Confidence 4445554443321 12222222222 2345666666777777777644 444444 3332 24444555555
Q ss_pred HHHHhCC-CHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 010202 386 TMFSHHG-HHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRA 464 (515)
Q Consensus 386 ~~~~~~g-~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 464 (515)
.++.+.+ ....+...+..+.. .++..+-...+.++.+.|+ ..++ ..+-+..+ . ++ .....+.+++..
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A~~aLg~~~~-~~av-~~Li~~L~-~---~~--~~~~a~~ALg~i 248 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEAIIGLALRKD-KRVL-SVLIKELK-K---GT--VGDLIIEAAGEL 248 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHccCC-hhHH-HHHHHHHc-C---Cc--hHHHHHHHHHhc
Confidence 5555543 24456666666654 3566666667777777777 4556 44444444 1 22 234677888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010202 465 NKCEWAYLLFKEMIGHDITPRYQTCRLILDEVK 497 (515)
Q Consensus 465 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 497 (515)
|.. +|...+.++.+ -.||..+-...+.+|.
T Consensus 249 g~~-~a~p~L~~l~~--~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 249 GDK-TLLPVLDTLLY--KFDDNEIITKAIDKLK 278 (280)
T ss_pred CCH-hHHHHHHHHHh--hCCChhHHHHHHHHHh
Confidence 884 68888888774 3457766666666554
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=87.88 E-value=2.4 Score=31.27 Aligned_cols=78 Identities=14% Similarity=0.195 Sum_probs=44.5
Q ss_pred hHHHHHHHHHhcCChHHHH--HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010202 416 TFHPLLKSCFKTGKTDECL--SQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLIL 493 (515)
Q Consensus 416 ~~~~ll~~~~~~g~~~~A~--~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 493 (515)
.|..--..+....+.|. + ++-+..+.. +.+.|++....+.+.+|.|.+++..|.++++-...+ ..+...+|..++
T Consensus 10 eF~ary~~~F~~~~iD~-we~rrglN~l~~-~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~l 86 (108)
T PF02284_consen 10 EFDARYEKYFNRPDIDG-WELRRGLNNLFG-YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHHH-TT--H-HHHHHHHHHHTT-SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHH
T ss_pred HHHHHHHHHhCCccccH-HHHHHHHHHHhc-cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHH
Confidence 34444445555555553 2 133334433 567788999999999999999999999999887752 233333676666
Q ss_pred HHH
Q 010202 494 DEV 496 (515)
Q Consensus 494 ~~~ 496 (515)
+-+
T Consensus 87 qEl 89 (108)
T PF02284_consen 87 QEL 89 (108)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=87.66 E-value=13 Score=29.84 Aligned_cols=65 Identities=12% Similarity=0.107 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHH---cCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 010202 134 SEIYEMMVDILG---KVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFG 198 (515)
Q Consensus 134 ~~~~~~li~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 198 (515)
..+.+.||+... ..++.+++..+++.+..-.|.....-..-...+...|+|++|+++|+++.+.+
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 344444444332 36788888888888765444322222222456777888888888888887754
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.63 E-value=0.51 Score=26.96 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=10.3
Q ss_pred CCChhhHHHHHHHHHccCChhHH
Q 010202 234 PPNAHTFNIFIHGWCKINRVDEA 256 (515)
Q Consensus 234 ~~~~~~~~~li~~~~~~g~~~~A 256 (515)
|.+..+|+.+...|...|++++|
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhh
Confidence 33444444444444444444444
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.62 E-value=35 Score=34.82 Aligned_cols=47 Identities=9% Similarity=0.052 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHH--HHH-HHhcCCHHHHHHHHHHHhh
Q 010202 150 MDQMRALLEEMSKGHIVTLNTIAKV--MRR-FSGAGQWEDAVRTFDELGT 196 (515)
Q Consensus 150 ~~~A~~~~~~~~~~~~~~~~~~~~l--i~~-~~~~g~~~~A~~~~~~m~~ 196 (515)
...|.++++.....+.......... ..+ +....+.+.|+.+|..+.+
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAE 277 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 4567777776665544322222211 222 4455677777777777655
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.60 E-value=1.4 Score=24.70 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010202 380 TFNTMITMFSHHGHHEKAFHVLEEMNK 406 (515)
Q Consensus 380 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 406 (515)
.|..+...+...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 355566666667777777777766665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=85.94 E-value=8.6 Score=32.65 Aligned_cols=77 Identities=10% Similarity=0.009 Sum_probs=55.8
Q ss_pred HcCCChHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC---CCCCCHHHHHHHHHHHHHcCCHH
Q 010202 145 GKVRQMDQMRALLEEMSKGHIV-TLNTIAKVMRRFSGAGQWEDAVRTFDELGTF---GLEKNTETMNLLLDTLCKEGKVE 220 (515)
Q Consensus 145 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~~~~~~~~~ll~~~~~~~~~~ 220 (515)
.+.|+ +.|.+.|-.+...... +...... +..|....+.+++++++.+..+. +-.+|+..+.+|...+.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~a-LAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYA-LATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHH-HHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 44454 5688888777765554 4444444 44555577899999999887653 33678999999999999999998
Q ss_pred HHH
Q 010202 221 LAR 223 (515)
Q Consensus 221 ~a~ 223 (515)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 874
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=84.95 E-value=2.5 Score=25.02 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010202 452 TTYTLVIHGLCRANKCEWAYLLFKEMIG 479 (515)
Q Consensus 452 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 479 (515)
.+++.+...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677788888888888888888887764
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=84.86 E-value=40 Score=32.78 Aligned_cols=119 Identities=12% Similarity=0.003 Sum_probs=63.1
Q ss_pred CCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010202 147 VRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVF 226 (515)
Q Consensus 147 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 226 (515)
.|++..|-+-+....++.+..+.........+...|.++.+.+.+....+. +.....+...+++...+.|+++.|...-
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a 380 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTA 380 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHH
Confidence 455444433333333333322222222245556667777777776655432 2334556666777777777777777776
Q ss_pred HHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 010202 227 LELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGH 266 (515)
Q Consensus 227 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 266 (515)
..|...--.+..+........-..|-++++...++++...
T Consensus 381 ~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 381 EMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 6654433333333333333334456667777777666544
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.81 E-value=15 Score=36.63 Aligned_cols=97 Identities=19% Similarity=0.257 Sum_probs=48.8
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 010202 318 AKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKA 397 (515)
Q Consensus 318 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 397 (515)
.+.|+++.|.++..+. .+..-|..|.++..+.+++..|.+.|. ... -|..|+-.+...|+.+..
T Consensus 648 l~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~-~a~---------d~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFL-RAR---------DLGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHH-hhc---------chhhhhhhhhhcCChhHH
Confidence 3556666665554442 344456666666666666666666665 221 244445555555555544
Q ss_pred HHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHH
Q 010202 398 FHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLL 438 (515)
Q Consensus 398 ~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 438 (515)
..+-....+.| +.|. ..-++...|++++++ +++
T Consensus 712 ~~la~~~~~~g--~~N~-----AF~~~~l~g~~~~C~-~lL 744 (794)
T KOG0276|consen 712 AVLASLAKKQG--KNNL-----AFLAYFLSGDYEECL-ELL 744 (794)
T ss_pred HHHHHHHHhhc--ccch-----HHHHHHHcCCHHHHH-HHH
Confidence 44444444444 1221 222344556666655 444
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=84.34 E-value=2.7 Score=24.91 Aligned_cols=28 Identities=29% Similarity=0.492 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010202 379 STFNTMITMFSHHGHHEKAFHVLEEMNK 406 (515)
Q Consensus 379 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 406 (515)
.+++.+...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566666777777777777777766644
|
|
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=83.66 E-value=7.4 Score=29.98 Aligned_cols=59 Identities=8% Similarity=0.196 Sum_probs=46.1
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHH
Q 010202 186 DAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFI 244 (515)
Q Consensus 186 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 244 (515)
+..+.++.+....+.|++.....-+++|-+.+|+..|.++|+.++....+...+|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 44556667777778899999999999999999999999999988876655555565554
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.66 E-value=55 Score=33.45 Aligned_cols=176 Identities=13% Similarity=0.085 Sum_probs=82.7
Q ss_pred HHHHHHHHHhccCCCCCCCHHHHHHH----HHH-HHcCCChHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHhcC
Q 010202 115 KSALGIFRWAGSCPGYEHSSEIYEMM----VDI-LGKVRQMDQMRALLEEMSK-------GHIVTLNTIAKVMRRFSGAG 182 (515)
Q Consensus 115 ~~a~~~~~~~~~~~~~~~~~~~~~~l----i~~-~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g 182 (515)
..+..+++.... .| +......+ ... ++...+.+.|...|..+.. .+ ...+...+...|.+..
T Consensus 229 ~~a~~~~~~~a~-~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 229 SEAFKYYREAAK-LG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGL 302 (552)
T ss_pred hHHHHHHHHHHh-hc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCC
Confidence 456677776642 22 22222222 222 4456788999999988755 22 2223344455555532
Q ss_pred -----CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHh-hcCCCCChhhHHHHHHHHH----ccC
Q 010202 183 -----QWEDAVRTFDELGTFGLEKNTETMNLLLDTLCK-EGKVELARSVFLEL-KSCIPPNAHTFNIFIHGWC----KIN 251 (515)
Q Consensus 183 -----~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~-~~~~~~~~~~~~~li~~~~----~~g 251 (515)
+.+.|+.++....+.| .|+.......+..... ..+...|.++|... +.|. .. .+-.+..+|. -..
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~--A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-IL--AIYRLALCYELGLGVER 378 (552)
T ss_pred CCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hH--HHHHHHHHHHhCCCcCC
Confidence 4566777777776665 3444433322222222 13455666666663 2321 11 1222222221 223
Q ss_pred ChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 010202 252 RVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQG 302 (515)
Q Consensus 252 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 302 (515)
+.+.|..++.+..++| .|...--...+..+.. +.++.+.-.+..+.+.|
T Consensus 379 ~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 5566666666666655 2221111122222222 55555555555444443
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.64 E-value=34 Score=30.98 Aligned_cols=70 Identities=19% Similarity=0.195 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCHHH
Q 010202 274 SYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKI-----VGSKPDSRF 344 (515)
Q Consensus 274 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~ 344 (515)
+++...+.|..+|.+.+|.++.+..+... +.+...+..++..++..||--.+.+-++.+.+ .|+..|..+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 34455667777777777777777776653 34666777777777777776666655555432 355555443
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=83.27 E-value=49 Score=32.57 Aligned_cols=181 Identities=10% Similarity=0.071 Sum_probs=120.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHH
Q 010202 304 PPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNT 383 (515)
Q Consensus 304 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 383 (515)
..|.....+++..+..+-.+.-.+.+-.+|...| .+-..|..++..|... ..++-..+|+ .+.+..+. |++.-..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWe-r~ve~dfn-Dvv~~Re 137 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWE-RLVEYDFN-DVVIGRE 137 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHH-HHHHhcch-hHHHHHH
Confidence 4567778888888888888888888888888764 4566778888888877 5566677777 66555432 4444444
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCCC------HHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 010202 384 MITMFSHHGHHEKAFHVLEEMNKLEHCKPN------VQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLV 457 (515)
Q Consensus 384 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~l 457 (515)
+..-|-+ ++.+.+..+|.++...- -|. ...|..+... -..+.+.-+ .+..++..+.|...-...+.-+
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~yrf--I~~~q~~~i~evWeKL~~~--i~dD~D~fl-~l~~kiqt~lg~~~~~Vl~qdv 211 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALYRF--IPRRQNAAIKEVWEKLPEL--IGDDKDFFL-RLQKKIQTKLGEGRGSVLMQDV 211 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHHHh--cchhhhhhHHHHHHHHHHh--ccccHHHHH-HHHHHHHHhhccchHHHHHHHH
Confidence 5555544 88888888888887642 331 1133333321 145566666 7777777767766666777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010202 458 IHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEV 496 (515)
Q Consensus 458 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 496 (515)
-.-|....++++|+++++..++.+ ..|...-..++.-+
T Consensus 212 ~~~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 212 YKKYSENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred HHHhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 788888899999999999887754 34444444444433
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=82.60 E-value=2.5 Score=23.76 Aligned_cols=27 Identities=15% Similarity=0.054 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010202 453 TYTLVIHGLCRANKCEWAYLLFKEMIG 479 (515)
Q Consensus 453 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 479 (515)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666667777777777777776654
|
... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=81.97 E-value=86 Score=34.45 Aligned_cols=106 Identities=15% Similarity=0.200 Sum_probs=58.3
Q ss_pred HHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCC
Q 010202 350 YTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGK 429 (515)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~ 429 (515)
+.+...+.+++|--.|+ ..-+ ..-.+.+|...|+|.+|+.+-.++.... .--..+-..|..-+...++
T Consensus 947 ~hL~~~~~~~~Aal~Ye-~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~--de~~~~a~~L~s~L~e~~k 1014 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYE-RCGK---------LEKALKAYKECGDWREALSLAAQLSEGK--DELVILAEELVSRLVEQRK 1014 (1265)
T ss_pred HHHHHhccccHHHHHHH-Hhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCH--HHHHHHHHHHHHHHHHccc
Confidence 33445566666666665 2211 1233566677777777777776653310 0011112455666677777
Q ss_pred hHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010202 430 TDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEM 477 (515)
Q Consensus 430 ~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 477 (515)
.-+|. ++..+... . ..-.+..|++...+++|.++....
T Consensus 1015 h~eAa-~il~e~~s----d-----~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1015 HYEAA-KILLEYLS----D-----PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred chhHH-HHHHHHhc----C-----HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 77776 66655544 1 223445566777777777766544
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.16 E-value=11 Score=32.35 Aligned_cols=74 Identities=14% Similarity=0.148 Sum_probs=44.7
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHH
Q 010202 138 EMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFG--LEKNTETMNLLLD 211 (515)
Q Consensus 138 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~ll~ 211 (515)
+..++-+.+.+++.+|+.+.+.-.+..+.+...-..++..++-.|+|++|..-++..-+.. ..+-..+|..+++
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 3445556667777777777776666666655555566777777777777776665554321 1223445555554
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.92 E-value=41 Score=30.03 Aligned_cols=251 Identities=13% Similarity=0.158 Sum_probs=139.8
Q ss_pred CCChHHHHHHHHHHhcCCC--CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhhC---CC--CCCHHHHHHHHHHHHHcC
Q 010202 147 VRQMDQMRALLEEMSKGHI--VTL--NTIAKVMRRFSGAGQWEDAVRTFDELGTF---GL--EKNTETMNLLLDTLCKEG 217 (515)
Q Consensus 147 ~g~~~~A~~~~~~~~~~~~--~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~--~~~~~~~~~ll~~~~~~~ 217 (515)
..+.++|..-|.+..+-.. ..| .++..++..+.+.|++++..+.|.++... .+ .-+..+.|++++..+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3456677777776654222 233 45555677788888888887777776431 11 224556677777777677
Q ss_pred CHHHHHHHHHH-hhc-CCCCChh----hHHHHHHHHHccCChhHHHHHHHHHHhCCC----Cc-------cHhHHHHHHH
Q 010202 218 KVELARSVFLE-LKS-CIPPNAH----TFNIFIHGWCKINRVDEAQWTIQEMKGHGC----HP-------CVISYSTIIQ 280 (515)
Q Consensus 218 ~~~~a~~~~~~-~~~-~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~-------~~~~~~~li~ 280 (515)
+.+.....|+. +.. ....|.. +-+.|...|...|.+....+++.++...-- .. -...|..=|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 76666666654 211 0011111 224577778888888888888888754211 11 1346777788
Q ss_pred HHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHH-----HhcCCHHHHHHHHHHHH----hcCCCCCHHH--HHHH
Q 010202 281 SYCRQYNFSKVYELLDEMQAQ-GCPPNVVTYTTVMSYL-----AKSGDFEEAIRITEKMK----IVGSKPDSRF--FNCL 348 (515)
Q Consensus 281 ~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~-----~~~g~~~~a~~~~~~~~----~~~~~~~~~~--~~~l 348 (515)
.|....+-..-..+|++.... .-.|.+.... +|+-| .+.|.+++|..-|-+.. +.|.+..... |-.|
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 888888877778888876542 2344544433 34444 35677877754333332 3442222222 3344
Q ss_pred HHHHHhcCCHHHHHHHHH-hhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 010202 349 IYTLGRASRVQEAVYVYQ-VEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEM 404 (515)
Q Consensus 349 i~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 404 (515)
..++.+.|- .-|+ ++.+-..-.|.....+.++.+|.. ++..+-..++..-
T Consensus 279 ANMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~~ 329 (440)
T KOG1464|consen 279 ANMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILKSN 329 (440)
T ss_pred HHHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHhh
Confidence 455554431 1111 011112224566778888888864 4565655555543
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=80.90 E-value=2.9 Score=23.46 Aligned_cols=27 Identities=15% Similarity=0.346 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010202 380 TFNTMITMFSHHGHHEKAFHVLEEMNK 406 (515)
Q Consensus 380 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 406 (515)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666667777777777766655
|
... |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.61 E-value=39 Score=29.59 Aligned_cols=18 Identities=17% Similarity=0.396 Sum_probs=11.1
Q ss_pred HHHcCCChHHHHHHHHHH
Q 010202 143 ILGKVRQMDQMRALLEEM 160 (515)
Q Consensus 143 ~~~~~g~~~~A~~~~~~~ 160 (515)
.++-.+++++|.++|.+.
T Consensus 23 lfgg~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 23 LFGGSNKYEEAAELYERA 40 (288)
T ss_pred ccCCCcchHHHHHHHHHH
Confidence 344455677777777654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=80.58 E-value=96 Score=34.11 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=12.9
Q ss_pred HHHHHHHHHHcC--CHHHHHHHHHHhh
Q 010202 206 MNLLLDTLCKEG--KVELARSVFLELK 230 (515)
Q Consensus 206 ~~~ll~~~~~~~--~~~~a~~~~~~~~ 230 (515)
...+|.+|.+.+ .++.+++...+++
T Consensus 793 ~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 793 NLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 344555666655 4555555444433
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=80.41 E-value=0.87 Score=36.72 Aligned_cols=83 Identities=17% Similarity=0.205 Sum_probs=44.6
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 010202 243 FIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGD 322 (515)
Q Consensus 243 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 322 (515)
+++.+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 44555566666666666666665544445666666777777666666666665511 11222334455555555
Q ss_pred HHHHHHHHHH
Q 010202 323 FEEAIRITEK 332 (515)
Q Consensus 323 ~~~a~~~~~~ 332 (515)
++++.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555544443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.28 E-value=14 Score=31.85 Aligned_cols=54 Identities=11% Similarity=0.126 Sum_probs=25.4
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHH
Q 010202 210 LDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEM 263 (515)
Q Consensus 210 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 263 (515)
+..+.+.+.+.+++....+-.+.-|.|...-..+++.+|-.|++++|..-++..
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 334444455555555554422223444444455555555555555555444443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 80.6 bits (197), Expect = 4e-16
Identities = 25/174 (14%), Positives = 61/174 (35%), Gaps = 4/174 (2%)
Query: 227 LELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGH---GCHPCVISYSTIIQSYC 283
++ + F +++ A + G + Y+ ++ +
Sbjct: 117 QHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWA 176
Query: 284 RQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAI-RITEKMKIVGSKPDS 342
RQ F ++ +L ++ G P++++Y + + + I R E+M G K +
Sbjct: 177 RQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQA 236
Query: 343 RFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEK 396
F L+ RA+ ++ V + P +T + +++ G
Sbjct: 237 LFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSY 290
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 76.0 bits (185), Expect = 1e-14
Identities = 27/201 (13%), Positives = 55/201 (27%), Gaps = 4/201 (1%)
Query: 249 KINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLD---EMQAQGCPP 305
+D Q + + + LL + +
Sbjct: 104 GKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL 163
Query: 306 NVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVY 365
+ Y VM A+ G F+E + + +K G PD + + +GR + +
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC 223
Query: 366 QVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCF 425
+M + G+ +++ KA H ++ L P LL+ +
Sbjct: 224 LEQMSQEGLKLQALFTAVLLSEEDRATVL-KAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282
Query: 426 KTGKTDECLSQLLDDMVNKHH 446
L +
Sbjct: 283 AKDGRVSYPKLHLPLKTLQCL 303
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 72.2 bits (175), Expect = 2e-13
Identities = 22/223 (9%), Positives = 65/223 (29%), Gaps = 4/223 (1%)
Query: 294 LLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLG 353
L D + P ++ + + + +
Sbjct: 79 LEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCL 138
Query: 354 RASRVQEA--VYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCK 411
++ A + V + +N ++ ++ G ++ +VL + K
Sbjct: 139 LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV-KDAGLT 197
Query: 412 PNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAY 471
P++ ++ L+ + + + + L+ M + + +++ RA + +
Sbjct: 198 PDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQAL-FTAVLLSEEDRATVLKAVH 256
Query: 472 LLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVMKK 514
+ P +L +V K + K+ +K
Sbjct: 257 KVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKT 299
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 53.7 bits (127), Expect = 1e-07
Identities = 24/218 (11%), Positives = 62/218 (28%), Gaps = 12/218 (5%)
Query: 129 GYEHSSEIYEMMVDILGKVRQMDQMRALLEEM----SKGHIVTLNTIAKVMRRFSGAGQW 184
+ Q+ LL K ++TL+ VM ++ G +
Sbjct: 122 QLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAF 181
Query: 185 EDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGK-VELARSVFLELKSCIPPNAHTFNIF 243
++ V + GL + + L + ++ + ++ F
Sbjct: 182 KELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAV 241
Query: 244 IHGWCKINRVDEAQWTIQ-EMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQG 302
+ V +A ++ P ++ S +++ + +L ++
Sbjct: 242 LLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQ 301
Query: 303 CPPNV------VTYTTVMSYLAKSGDFEEAIRITEKMK 334
C + V+S + +E + +K
Sbjct: 302 CLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLK 339
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 42.9 bits (99), Expect = 3e-04
Identities = 17/119 (14%), Positives = 34/119 (28%), Gaps = 5/119 (4%)
Query: 399 HVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVN--KHHLSLDITTYTL 456
+ Q K C T + LL + L + Y
Sbjct: 112 QAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPL-AHHLLVVHHGQRQKRKLLTLDMYNA 170
Query: 457 VIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVMKKL 515
V+ G R + + + +TP + L + ++ A IE ++++
Sbjct: 171 VMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQD--QDAGTIERCLEQM 227
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.0 bits (173), Expect = 5e-13
Identities = 70/547 (12%), Positives = 159/547 (29%), Gaps = 133/547 (24%)
Query: 39 SPIESYCSDGARLDHHQVLCVDSPRLPDIDVIISKVHVGSSEDEVFQSLKQDHVCNAIQP 98
SPI++ + + + D RL + + + +K +V S + + L+Q + ++P
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRD--RLYNDNQVFAKYNV--SRLQPYLKLRQ-ALLE-LRP 149
Query: 99 SHYLVNKLIHRFKDDWKSAL----------------GIFRWAGSCPGYEHSSE-IYEMMV 141
+ ++ I K+ + IF W +S E + EM+
Sbjct: 150 AKNVL---IDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-WLNL--KNCNSPETVLEMLQ 203
Query: 142 DILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWE------DAVRTFDELG 195
+L Q+D + S + +++I +RR + +E V+
Sbjct: 204 KLL---YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 196 TFGLE-------KNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWC 248
F L + + + L ++ ++
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP--------DEVKSLL----- 307
Query: 249 KINRVDEAQWTIQEMKG-----HGCHPCVIS--------YSTIIQSYCRQYNFSKV---- 291
++ + +P +S ++ + N K+
Sbjct: 308 -------LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW-KHVNCDKLTTII 359
Query: 292 ---YELLDEMQAQGC-------PPNVVTYTTVMSYLAKSGDFEEAIRITEKMK----IVG 337
+L+ + + PP+ T ++S + + + + K+ +
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
Query: 338 SKPDSRFFNCLIYTLGRASRVQEAV--------YVYQVEMPENGVAPDTST--FNTMITM 387
+S IY + E Y + + P F
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF------ 473
Query: 388 FSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVN---- 443
+SH GHH K E M + F L + +L+ +
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLD---FRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 444 KHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKH--M 501
K ++ + Y +++ A L F I ++ + L+ + + +
Sbjct: 531 KPYICDNDPKYERLVN----------AILDFLPKIEENLI-CSKYTDLLRIALMAEDEAI 579
Query: 502 YDAAEKI 508
++ A K
Sbjct: 580 FEEAHKQ 586
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 6e-07
Identities = 66/561 (11%), Positives = 149/561 (26%), Gaps = 177/561 (31%)
Query: 47 DGARLDHH--QVLCVDSPRL-PDIDVIISKVHVGSSEDEVFQSLKQDHVC---NAIQPSH 100
+ + +L V + D V + + DH+ +A+ +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDC----KDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 101 YLV-------NKLIHRFKDD-------WKSALGIFRWAGSCPGYEHSSEIYEMMVDILG- 145
L +++ +F ++ + + + +Y D L
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMS----PIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 146 -----------KVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDEL 194
+++ ++R L E+ V ++
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID------------------------- 156
Query: 195 GTFGLEKNTETMNLLLDTLCKEGKVELARSV--FLELKSCIPPNAHTFNIFIHGWCKINR 252
G G GK +A V +++ + F IF W +
Sbjct: 157 GVLG---------------S--GKTWVALDVCLSYKVQCKMD-----FKIF---WLNLKN 191
Query: 253 VDEAQWTIQ-------EMKGHGCHPCVISYSTI-----IQSYCRQYNFSKVYE----LLD 296
+ + ++ ++ + S + IQ+ R+ SK YE +L
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 297 EMQAQ--------GCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPD------S 342
+Q C + TT + I+ + PD
Sbjct: 252 NVQNAKAWNAFNLSCK---ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 343 RFFNCLIYTLGRASRVQEAVYVYQVEMPE--NGVAPDTSTFNTMITMFSHHGHHEKAFHV 400
++ +C L R E + P + +A + H +K +
Sbjct: 309 KYLDCRPQDLPR-----EVLTT----NPRRLSIIAESIRDGLATWDNWKHVNC-DKLTTI 358
Query: 401 LEEMNKLEHCKPNVQTFHPLLKSCFK--------------------TGKTDECLSQLLDD 440
+E + L +P + F + +++
Sbjct: 359 IE--SSLNVLEPA------EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 441 MVNKHHLSLDITTYTLVIHGLCRANKCEWA--YLLFKEMIGHDITPR-YQTCRLILDEVK 497
+ + T+ I + K + Y L + ++ H P+ + + LI +
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 498 Q-------KHMYDA--AEKIE 509
Q H+ + E++
Sbjct: 471 QYFYSHIGHHLKNIEHPERMT 491
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 50.1 bits (119), Expect = 7e-07
Identities = 42/262 (16%), Positives = 77/262 (29%), Gaps = 19/262 (7%)
Query: 182 GQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFN 241
G ++ + + E++ E L + K + E+K P
Sbjct: 13 GSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLD---EIKPSSAPELQAVR 69
Query: 242 IFIHGWCKINRVDEAQWTIQEMKGHGCHPC-VISYSTIIQSYCRQYNFSKVYELLDEMQA 300
+F +R D + Y N L + +
Sbjct: 70 MFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDS 129
Query: 301 QGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDS---RFFNCLIYTLGRASR 357
C V L K + A + +KM+ D+ + + +
Sbjct: 130 LECMAMTV------QILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEK 181
Query: 358 VQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTF 417
+Q+A Y++Q EM + +P N G E A VL+E + + +T
Sbjct: 182 LQDAYYIFQ-EMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG--HPETL 237
Query: 418 HPLLKSCFKTGKTDECLSQLLD 439
L+ GK E ++ L
Sbjct: 238 INLVVLSQHLGKPPEVTNRYLS 259
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 3e-05
Identities = 30/237 (12%), Positives = 69/237 (29%), Gaps = 12/237 (5%)
Query: 131 EHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRT 190
E E + R+ + ++ S + + A+ + + + V
Sbjct: 31 ERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEY---LASHSRRDAIVAE 87
Query: 191 FDELGTFGLEKNTETMNLLLDT-LCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCK 249
D + ++ T L+ + + + A L + I K
Sbjct: 88 LDREMSRSVDVTNTTFLLMAASIYFYDQNPDAA---LRTLHQGDSLECMAMTVQIL--LK 142
Query: 250 INRVDEAQWTIQEMKGHGC-HPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVV 308
++R+D A+ +++M+ + + Y + EM A C P ++
Sbjct: 143 LDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEM-ADKCSPTLL 201
Query: 309 TYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVY 365
+ G +E A + ++ S L+ + E Y
Sbjct: 202 LLNGQAACHMAQGRWEAAEGVLQEALDKDSG-HPETLINLVVLSQHLGKPPEVTNRY 257
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 515 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.98 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.88 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.85 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.84 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.82 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.81 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.8 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.8 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.78 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.77 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.75 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.75 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.74 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.74 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.73 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.72 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.69 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.69 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.66 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.65 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.65 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.65 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.64 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.64 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.63 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.61 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.61 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.61 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.6 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.6 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.6 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.6 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.6 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.59 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.56 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.55 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.55 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.55 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.54 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.54 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.54 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.53 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.53 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.52 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.47 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.46 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.45 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.44 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.44 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.43 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.43 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.42 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.39 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.38 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.37 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.36 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.34 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.33 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.32 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.31 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.31 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.27 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.26 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.25 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.22 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.21 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.18 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.18 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.15 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.15 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.12 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.09 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.09 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.07 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.04 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.04 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.04 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.03 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.01 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.01 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.99 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.98 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.98 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.95 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.94 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.93 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.92 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.91 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.91 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.88 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.87 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.86 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.86 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.86 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.85 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.84 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.82 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.77 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.75 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.73 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.72 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.72 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.71 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.7 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.7 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.7 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.7 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.7 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.69 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.68 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.66 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.65 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.64 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.63 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.61 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.6 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.6 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.59 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.58 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.58 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.55 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.55 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.55 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.54 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.53 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.52 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.52 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.52 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.51 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.51 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.48 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.44 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.43 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.42 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.41 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.4 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.39 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.38 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.37 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.36 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.36 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.33 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.29 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.29 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.28 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.27 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.27 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.25 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.25 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.24 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.24 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.23 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.2 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.16 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.15 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.15 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.13 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.11 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.1 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.1 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.09 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.04 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.03 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.02 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.02 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.02 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.93 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.93 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.9 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.86 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.85 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.79 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.76 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.75 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.74 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.73 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.7 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.68 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.66 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.65 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.61 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.6 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.58 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.45 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.45 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.4 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.4 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.32 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.22 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.05 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.84 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.67 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.57 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.44 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.41 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.4 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.31 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.26 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.2 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.19 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.17 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.16 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.09 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.0 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.88 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.86 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.85 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.84 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.62 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.51 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.82 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.41 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.28 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.71 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.68 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 93.04 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.82 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.61 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.14 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 91.92 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.73 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 91.32 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 90.94 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.85 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 90.6 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 90.3 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 89.65 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 89.55 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.35 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 89.29 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 89.22 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 88.72 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 87.77 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 87.17 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 85.1 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 82.75 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 82.7 | |
| 2qx5_A | 661 | Nucleoporin NIC96; mRNA transport, nuclear pore co | 82.13 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 81.68 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 81.48 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 80.73 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 80.19 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-39 Score=327.33 Aligned_cols=455 Identities=12% Similarity=0.029 Sum_probs=370.6
Q ss_pred cccccccCCCcc-cccccccCCCCChhhHHHHHHH-hcCCCCHHH--HHHHhhccccCCCCcCCHHHHHHHHHHhh--hC
Q 010202 40 PIESYCSDGARL-DHHQVLCVDSPRLPDIDVIISK-VHVGSSEDE--VFQSLKQDHVCNAIQPSHYLVNKLIHRFK--DD 113 (515)
Q Consensus 40 l~~~y~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~--~~~~~~~~~~~~g~~p~~~~~~~ll~~~~--~~ 113 (515)
+...++++|... ....+..++.+++..|+.++.. .+.+...++ +|+.+. +..|+..++..+...+. ++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~------~~~p~~~~~~~l~~~~~~~g~ 132 (597)
T 2xpi_A 59 LANNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVL------DITGNPNDAFWLAQVYCCTGD 132 (597)
T ss_dssp GC---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------HHHCCHHHHHHHHHHHHHTTC
T ss_pred hcccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHH------hhCCCchHHHHHHHHHHHcCc
Confidence 344566666543 4556777888899999999954 555554444 566664 35688889988888876 58
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCC----------------CCCHHHHHHHHHH
Q 010202 114 WKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGH----------------IVTLNTIAKVMRR 177 (515)
Q Consensus 114 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----------------~~~~~~~~~li~~ 177 (515)
++.|..+|+.+. ..++++.+++.++.+|.++|++++|.++|+++.... +.+..++..++.+
T Consensus 133 ~~~A~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 209 (597)
T 2xpi_A 133 YARAKCLLTKED---LYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQV 209 (597)
T ss_dssp HHHHHHHHHHTC---GGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---ccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHH
Confidence 999999999884 236789999999999999999999999999543322 2246778888999
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH--------------------------------------HHHHHHcCCH
Q 010202 178 FSGAGQWEDAVRTFDELGTFGLEKNTETMNLL--------------------------------------LDTLCKEGKV 219 (515)
Q Consensus 178 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l--------------------------------------l~~~~~~~~~ 219 (515)
|.+.|++++|+++|+++.+.+ +.+...+..+ +..|.+.|++
T Consensus 210 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 288 (597)
T 2xpi_A 210 YTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDEL 288 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchH
Confidence 999999999999999998864 2234443333 4456678899
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010202 220 ELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQ 299 (515)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 299 (515)
++|.++|+++... +++..+++.++.+|.+.|++++|..+|+++.+.+ +.+..+|+.++.++.+.|++++|.++++++.
T Consensus 289 ~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 366 (597)
T 2xpi_A 289 RRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLV 366 (597)
T ss_dssp HHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999996544 6899999999999999999999999999998765 4478899999999999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHH
Q 010202 300 AQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTS 379 (515)
Q Consensus 300 ~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 379 (515)
+.. +.+..++..++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|..+|+ .+.+.+ +.+..
T Consensus 367 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~-~~~~~ 442 (597)
T 2xpi_A 367 DRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYT-TAARLF-QGTHL 442 (597)
T ss_dssp HHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHHHTT-TTCSH
T ss_pred hhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHhC-ccchH
Confidence 653 4578999999999999999999999999998864 5678899999999999999999999999 776543 34788
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcC---CCCCC--HHHH
Q 010202 380 TFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKH---HLSLD--ITTY 454 (515)
Q Consensus 380 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~---~~~p~--~~~~ 454 (515)
+|+.++.+|.+.|++++|+++|+++.+.. +.+..+|..+...|.+.|++++|. ++++++.+.. +..|+ ..+|
T Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~p~~~~~~~ 519 (597)
T 2xpi_A 443 PYLFLGMQHMQLGNILLANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAI-NHFQNALLLVKKTQSNEKPWAATW 519 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHHSCCCSGGGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHH-HHHHHHHHhhhccccchhhHHHHH
Confidence 99999999999999999999999999865 567899999999999999999999 9999998732 56787 7899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010202 455 TLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVMKK 514 (515)
Q Consensus 455 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 514 (515)
..++.+|.+.|++++|.++++++.+.+ +.+..+|..+..+|...|++++|.+.++.+.+
T Consensus 520 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 520 ANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 999999999999999999999998754 45788999999999999999999999998865
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-35 Score=300.81 Aligned_cols=403 Identities=11% Similarity=0.042 Sum_probs=349.9
Q ss_pred cCCHHHHHHHHHHhh--hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHH
Q 010202 97 QPSHYLVNKLIHRFK--DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKV 174 (515)
Q Consensus 97 ~p~~~~~~~ll~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 174 (515)
.++...++.++..+. ++++.|..+|+.+. +..|+..++..++.+|.+.|++++|..+|+.+... +.+..++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l 156 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVL---DITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLA 156 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHH---hhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHH
Confidence 367888999999886 58999999999986 34568899999999999999999999999988542 4567788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhC---------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhh
Q 010202 175 MRRFSGAGQWEDAVRTFDELGTF---------------GLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHT 239 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~---------------g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 239 (515)
+.+|.+.|++++|+++|+++... |.+++..+|+.++.+|.+.|++++|.+.|+++....+.+...
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 236 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEA 236 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHH
Confidence 99999999999999999853221 223468899999999999999999999999976555555555
Q ss_pred HHHH--------------------------------------HHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHH
Q 010202 240 FNIF--------------------------------------IHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQS 281 (515)
Q Consensus 240 ~~~l--------------------------------------i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 281 (515)
+..+ +..|.+.|++++|.++|+++.+. +++..+|+.++.+
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADT 314 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHH
Confidence 4444 55667889999999999999875 5899999999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010202 282 YCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEA 361 (515)
Q Consensus 282 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 361 (515)
|.+.|++++|+++|+++.+.+ +.+..++..++.++.+.|++++|.++++++.+.. +.+..+++.++.+|.+.|++++|
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHH
Confidence 999999999999999999865 3377889999999999999999999999998764 66789999999999999999999
Q ss_pred HHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 010202 362 VYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDM 441 (515)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 441 (515)
..+|+ .+.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|. ++|+++
T Consensus 393 ~~~~~-~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~ 467 (597)
T 2xpi_A 393 RRYFS-KSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF--QGTHLPYLFLGMQHMQLGNILLAN-EYLQSS 467 (597)
T ss_dssp HHHHH-HHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--TTCSHHHHHHHHHHHHHTCHHHHH-HHHHHH
T ss_pred HHHHH-HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCCHHHHH-HHHHHH
Confidence 99999 665532 2468899999999999999999999999999865 567889999999999999999999 999999
Q ss_pred HHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010202 442 VNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGH----DITPR--YQTCRLILDEVKQKHMYDAAEKIEAVMKK 514 (515)
Q Consensus 442 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 514 (515)
.+.. +.+..+|..++..|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|++++|+++++.+.+
T Consensus 468 ~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 468 YALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544 (597)
T ss_dssp HHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 8843 346889999999999999999999999999875 66888 78999999999999999999999998764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.98 E-value=6.8e-31 Score=258.42 Aligned_cols=187 Identities=18% Similarity=0.246 Sum_probs=158.3
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCC---------hhHHHHHHHHHHHCCCCCCHH
Q 010202 238 HTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYN---------FSKVYELLDEMQAQGCPPNVV 308 (515)
Q Consensus 238 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~~~A~~~~~~m~~~g~~~~~~ 308 (515)
.+++.+|++|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+. .++|.++|++|...|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45777788888888888888888888888888888888888888876554 577888888888888888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHH
Q 010202 309 TYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMF 388 (515)
Q Consensus 309 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 388 (515)
||+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|+ .|.+.|+.||..+|++||.+|
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~-~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA-HMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888888888 888888888888888888888
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHh
Q 010202 389 SHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFK 426 (515)
Q Consensus 389 ~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 426 (515)
++.|+.++|.++|++|.+.| ..|+..||+.++..++.
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g-~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLV-RQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-SSBCHHHHHHHHHHHHS
T ss_pred hhCCCHHHHHHHHHHHHHhC-CCcCHHHHHHHHHHHhc
Confidence 88888888888888888888 88888888888887765
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=256.22 Aligned_cols=207 Identities=14% Similarity=0.192 Sum_probs=181.1
Q ss_pred hHHHHHHHHHHhCCCCccH-hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------H
Q 010202 254 DEAQWTIQEMKGHGCHPCV-ISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGD---------F 323 (515)
Q Consensus 254 ~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---------~ 323 (515)
..+..+.+++.+++..+.+ ..++.+|++|++.|++++|+++|++|.+.|+.||..||+++|.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3456666777777665443 46889999999999999999999999999999999999999999987654 7
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 010202 324 EEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEE 403 (515)
Q Consensus 324 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 403 (515)
+.|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|+ .|.+.|+.||..+|+++|.+|++.|++++|.++|++
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~-~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVK-QMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHH-HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 010202 404 MNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRA 464 (515)
Q Consensus 404 m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 464 (515)
|.+.| +.||..||+.|+.+|++.|+.++|. +++++|.+ .+..|+..||+.++..|...
T Consensus 166 M~~~G-~~Pd~~ty~~Li~~~~~~g~~d~A~-~ll~~Mr~-~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 166 MVESE-VVPEEPELAALLKVSMDTKNADKVY-KTLQRLRD-LVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHTT-CCCCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHH-HTSSBCHHHHHHHHHHHHSH
T ss_pred HHhcC-CCCCHHHHHHHHHHHhhCCCHHHHH-HHHHHHHH-hCCCcCHHHHHHHHHHHhcC
Confidence 99999 9999999999999999999999999 99999998 79999999999999998764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-27 Score=230.66 Aligned_cols=374 Identities=12% Similarity=0.102 Sum_probs=293.1
Q ss_pred hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010202 112 DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTF 191 (515)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 191 (515)
++++.|...+..+... .+.+...+..+...+.+.|++++|...++.....++.+..++..+...|.+.|++++|++.|
T Consensus 13 g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 90 (388)
T 1w3b_A 13 GDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHY 90 (388)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6888888888877532 24466777788888888888888988888888888888888888888888889999999888
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCcc
Q 010202 192 DELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPC 271 (515)
Q Consensus 192 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 271 (515)
+++.+.. +.+..+|..+..++...|++++|.+.|+++....|.+...+..+...+...|++++|.+.|+++.+.. +.+
T Consensus 91 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~ 168 (388)
T 1w3b_A 91 RHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNF 168 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCC
Confidence 8887753 33566788888888888888888888888655556667778888888888889999988888887753 335
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 010202 272 VISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYT 351 (515)
Q Consensus 272 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 351 (515)
..+|..+...+...|++++|++.|+++.+.+ +.+...+..+...+...|++++|...+++..+.. +.+..++..+...
T Consensus 169 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 246 (388)
T 1w3b_A 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACV 246 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHH
Confidence 6788888888888888889988888888764 2356778888888888888888888888887764 4457788888888
Q ss_pred HHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChH
Q 010202 352 LGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTD 431 (515)
Q Consensus 352 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~ 431 (515)
|.+.|++++|...|+ .+.+.. +.+..+|..+...+.+.|++++|++.|+++.+.. +.+..++..+...+...|+++
T Consensus 247 ~~~~g~~~~A~~~~~-~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~ 322 (388)
T 1w3b_A 247 YYEQGLIDLAIDTYR-RAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHTTCHHHHHHHHH-HHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHcCCHHHHHHHHH-HHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHcCCHH
Confidence 888889998888888 555532 2256778888888888889999998888888754 567778888888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC
Q 010202 432 ECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPR-YQTCRLILDEVKQKH 500 (515)
Q Consensus 432 ~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g 500 (515)
+|+ ..++++.+. .+.+...+..+...+.+.|++++|.+.++++.+ +.|+ ...|..+...+...|
T Consensus 323 ~A~-~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 323 EAV-RLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHH-HHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred HHH-HHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHcc
Confidence 888 888888662 223467788888888888999999988888886 4454 455666655555444
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-27 Score=226.75 Aligned_cols=364 Identities=9% Similarity=-0.012 Sum_probs=312.5
Q ss_pred HHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 010202 140 MVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKV 219 (515)
Q Consensus 140 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 219 (515)
+...+.+.|++++|.+.++.+.+.++.+..++..+...+.+.|++++|...++...+.. +.+..+|..+...+.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 45667789999999999999998888888888888999999999999999999888753 56888999999999999999
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010202 220 ELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQ 299 (515)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 299 (515)
++|...|+++....|.+..+|..+..++.+.|++++|...|+++.+.. +.+...+..+...+...|++++|++.|+++.
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999999666567778889999999999999999999999998764 3345677888888999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHH
Q 010202 300 AQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTS 379 (515)
Q Consensus 300 ~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 379 (515)
+.. +.+..++..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|...|+ ...... +.+..
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~-~al~~~-p~~~~ 238 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYL-RALSLS-PNHAV 238 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHH-HHHHHC-TTCHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH-HHHhhC-cCCHH
Confidence 763 3357889999999999999999999999999875 5567889999999999999999999998 544432 23578
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 010202 380 TFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIH 459 (515)
Q Consensus 380 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~ 459 (515)
++..+...|...|++++|++.|+++.+.. +.+..++..+...+.+.|++++|. ..++++.+.. +.+..+|..+..
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~--p~~~~~~~~l~~ 313 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAE-DCYNTALRLC--PTHADSLNNLAN 313 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHH-HHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhC--cccHHHHHHHHH
Confidence 89999999999999999999999999854 445778999999999999999999 9999998842 456788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010202 460 GLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVMKKL 515 (515)
Q Consensus 460 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~l 515 (515)
.+.+.|++++|.+.++++.+. .+.+..++..+...+.+.|++++|.+.++.+.++
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999863 2445778888889999999999999999987653
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-23 Score=204.16 Aligned_cols=362 Identities=13% Similarity=0.059 Sum_probs=278.8
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 010202 131 EHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLL 210 (515)
Q Consensus 131 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 210 (515)
+.++..+..+...|.+.|++++|..+|+++...++.+..++..++.+|...|++++|++.|+++.+.+ +.+..++..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 44677888888899999999999999999888788888888888889999999999999999888764 44678888888
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCCCh---hhHHHHH------------HHHHccCChhHHHHHHHHHHhCCCCccHhHH
Q 010202 211 DTLCKEGKVELARSVFLELKSCIPPNA---HTFNIFI------------HGWCKINRVDEAQWTIQEMKGHGCHPCVISY 275 (515)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~li------------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 275 (515)
.+|...|++++|.+.|+++....+.+. ..+..++ ..+.+.|++++|...|+++.+.. +.+..++
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 180 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELR 180 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 899999999999999988766555555 6666654 44888899999999999988754 4467788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH-------
Q 010202 276 STIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCL------- 348 (515)
Q Consensus 276 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l------- 348 (515)
..+..+|.+.|++++|++.|+++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHH
Confidence 889999999999999999999887753 3467888889999999999999999999988764 3445555444
Q ss_pred -----HHHHHhcCCHHHHHHHHHhhchhCCCCCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHH
Q 010202 349 -----IYTLGRASRVQEAVYVYQVEMPENGVAPD-----TSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFH 418 (515)
Q Consensus 349 -----i~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~ 418 (515)
...|.+.|++++|...|+ .+... .|+ ...|..+...+.+.|++++|+..++++.+.. +.+...+.
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~-~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~ 333 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYE-SVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME--PDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHH-HHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH-HHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHH
Confidence 788889999999999998 55543 344 4478888889999999999999999988753 44678888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHH------------HHhcC-----CHHHHHHHHHHH-Hh
Q 010202 419 PLLKSCFKTGKTDECLSQLLDDMVNKHHLSLD-ITTYTLVIHG------------LCRAN-----KCEWAYLLFKEM-IG 479 (515)
Q Consensus 419 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~-~~~~~~li~~------------~~~~g-----~~~~A~~~~~~m-~~ 479 (515)
.+..+|...|++++|. ..++++.+ ..|+ ...+..+..+ |...| +.+++.+.++++ .+
T Consensus 334 ~l~~~~~~~~~~~~A~-~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~ 409 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAI-QDYETAQE---HNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ 409 (450)
T ss_dssp HHHHHHHHTTCHHHHH-HHHHHHHT---TSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHH-HHHHHHHH---hCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999998 88988877 3443 5555555532 33334 567778888863 32
Q ss_pred CCCCCC----H-------HHHHHHHHHHHhcCCHHHHHH
Q 010202 480 HDITPR----Y-------QTCRLILDEVKQKHMYDAAEK 507 (515)
Q Consensus 480 ~~~~p~----~-------~~~~~ll~~~~~~g~~~~a~~ 507 (515)
..|| . ..+..+..+|...|+.++..+
T Consensus 410 --~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~ 446 (450)
T 2y4t_A 410 --WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK 446 (450)
T ss_dssp --SCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC--
T ss_pred --hCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence 2332 2 266677777777777665443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-23 Score=209.36 Aligned_cols=388 Identities=12% Similarity=0.023 Sum_probs=213.0
Q ss_pred hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010202 112 DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTF 191 (515)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 191 (515)
++++.|+..|..+.... |++.++..+...|.+.|++++|.+.|+++.+.++.+..++..++.+|.+.|++++|+..|
T Consensus 20 g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 96 (514)
T 2gw1_A 20 KKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDL 96 (514)
T ss_dssp SCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 68999999999986432 589999999999999999999999999999988889999999999999999999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-----------------------------------h---hcC-
Q 010202 192 DELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLE-----------------------------------L---KSC- 232 (515)
Q Consensus 192 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-----------------------------------~---~~~- 232 (515)
+++.+.+ +++......++..+........+.+.+.. + ...
T Consensus 97 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (514)
T 2gw1_A 97 SVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPEL 175 (514)
T ss_dssp HHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCC
T ss_pred HHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHH
Confidence 9998875 23333322222222221111111111100 0 000
Q ss_pred ------CCCChhhHHHHHHHHHc---cCChhHHHHHHHHHHh-----CCC--------CccHhHHHHHHHHHHhcCChhH
Q 010202 233 ------IPPNAHTFNIFIHGWCK---INRVDEAQWTIQEMKG-----HGC--------HPCVISYSTIIQSYCRQYNFSK 290 (515)
Q Consensus 233 ------~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-----~~~--------~~~~~~~~~li~~~~~~g~~~~ 290 (515)
.+.+...+..+...+.. .|++++|...|+++.+ ..- +.+..+|..+...+...|++++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (514)
T 2gw1_A 176 TFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLG 255 (514)
T ss_dssp CCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHH
Confidence 01112233333333332 5555555555555544 200 1123345555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhch
Q 010202 291 VYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMP 370 (515)
Q Consensus 291 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 370 (515)
|++.++++.+.. |+..++..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|...|+ ...
T Consensus 256 A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~-~~~ 331 (514)
T 2gw1_A 256 AHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFD-KAK 331 (514)
T ss_dssp HHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHH-HHH
T ss_pred HHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHH-HHH
Confidence 555555555442 224455555555555555555555555555443 3334455555555555555555555555 333
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCC
Q 010202 371 ENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLD 450 (515)
Q Consensus 371 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~ 450 (515)
.... .+...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|. ..++++.+..+-.++
T Consensus 332 ~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~-~~~~~a~~~~~~~~~ 407 (514)
T 2gw1_A 332 ELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKAL-KQYDLAIELENKLDG 407 (514)
T ss_dssp HTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHTSSS
T ss_pred HhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHhhhccch
Confidence 2211 133445555555555555555555555555432 223344555555555555555555 555555442221122
Q ss_pred ----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010202 451 ----ITTYTLVIHGLCR---ANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVM 512 (515)
Q Consensus 451 ----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 512 (515)
...|..+...+.. .|++++|.+.++++.+.. +.+..++..+...+...|++++|.+.++..
T Consensus 408 ~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 408 IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp CSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 2245555555555 555555555555555421 223444445555555555555555555544
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-22 Score=199.82 Aligned_cols=329 Identities=12% Similarity=0.030 Sum_probs=266.3
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 010202 151 DQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELK 230 (515)
Q Consensus 151 ~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 230 (515)
..+...|.++...++.+...+..++..+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...|+++.
T Consensus 9 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 9 SGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344555566666777788888889999999999999999999998753 5578999999999999999999999999976
Q ss_pred cCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccH---hHHHHH------------HHHHHhcCChhHHHHHH
Q 010202 231 SCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCV---ISYSTI------------IQSYCRQYNFSKVYELL 295 (515)
Q Consensus 231 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l------------i~~~~~~g~~~~A~~~~ 295 (515)
...|.+..++..+..+|.+.|++++|...|+++.+.. +.+. ..|..+ ...+...|++++|++.|
T Consensus 88 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 88 QLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6667789999999999999999999999999999864 2234 566655 44488999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCC
Q 010202 296 DEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVA 375 (515)
Q Consensus 296 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 375 (515)
+++.+.. +.+..++..+...|.+.|++++|.+.++++.+.. +.+..++..+...|...|++++|...|+ .+.... +
T Consensus 167 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~-p 242 (450)
T 2y4t_A 167 DKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVR-ECLKLD-Q 242 (450)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHC-T
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHhC-C
Confidence 9998763 4478889999999999999999999999998864 5678999999999999999999999999 665432 2
Q ss_pred CCHHHHHHH------------HHHHHhCCCHHHHHHHHHHHHhCCCCCCC-----HHhHHHHHHHHHhcCChHHHHHHHH
Q 010202 376 PDTSTFNTM------------ITMFSHHGHHEKAFHVLEEMNKLEHCKPN-----VQTFHPLLKSCFKTGKTDECLSQLL 438 (515)
Q Consensus 376 ~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~~p~-----~~~~~~ll~~~~~~g~~~~A~~~~~ 438 (515)
.+...+..+ ...+.+.|++++|+++|+++.+.. |+ ...+..+...+.+.|++++|+ ..+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~ 318 (450)
T 2y4t_A 243 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE---PSIAEYTVRSKERICHCFSKDEKPVEAI-RVC 318 (450)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CSSHHHHHHHHHHHHHHHHTTTCHHHHH-HHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcchHHHHHHHHHHHHHHHHCCCHHHHH-HHH
Confidence 244455444 788999999999999999999843 54 447888899999999999999 999
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHH
Q 010202 439 DDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRY-QTCRLIL 493 (515)
Q Consensus 439 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll 493 (515)
+++.+.. +.+...|..+..+|...|++++|.+.++++.+ +.|+. ..+..+.
T Consensus 319 ~~a~~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 319 SEVLQME--PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHH
T ss_pred HHHHHhC--cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 9988732 23678999999999999999999999999996 55654 4444444
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.7e-22 Score=199.92 Aligned_cols=397 Identities=11% Similarity=0.008 Sum_probs=301.0
Q ss_pred HhcCCCCHHH--HHHHhhccccCCCCcCCHHHHHHHHHHhh--hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCC
Q 010202 73 KVHVGSSEDE--VFQSLKQDHVCNAIQPSHYLVNKLIHRFK--DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVR 148 (515)
Q Consensus 73 ~~~~~~~~~~--~~~~~~~~~~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 148 (515)
....+...++ .|+.+... .|+...+..+...+. ++++.|...+..+... .+.+..++..+..+|.+.|
T Consensus 16 ~~~~g~~~~A~~~~~~al~~------~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g 87 (514)
T 2gw1_A 16 FFRNKKYDDAIKYYNWALEL------KEDPVFYSNLSACYVSVGDLKKVVEMSTKALEL--KPDYSKVLLRRASANEGLG 87 (514)
T ss_dssp HHHTSCHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTT
T ss_pred HHHhccHHHHHHHHHHHHhc------CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc--ChHHHHHHHHHHHHHHHHh
Confidence 3455555544 56666553 378888877777665 6999999999998633 2457889999999999999
Q ss_pred ChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-------------------------------
Q 010202 149 QMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTF------------------------------- 197 (515)
Q Consensus 149 ~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------------------------- 197 (515)
++++|...|+.+...++.+......++..+........+.+.+..+...
T Consensus 88 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (514)
T 2gw1_A 88 KFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASF 167 (514)
T ss_dssp CHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHH
Confidence 9999999999998877765555444444444333333332222111100
Q ss_pred ----CC---------CCCHHHHHHHHHHHHH---cCCHHHHHHHHHHhhc-----C--C-------CCChhhHHHHHHHH
Q 010202 198 ----GL---------EKNTETMNLLLDTLCK---EGKVELARSVFLELKS-----C--I-------PPNAHTFNIFIHGW 247 (515)
Q Consensus 198 ----g~---------~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~--~-------~~~~~~~~~li~~~ 247 (515)
.. +.+...+......+.. .|++++|...|+++.. . . +.+..++..+...+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (514)
T 2gw1_A 168 FGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFK 247 (514)
T ss_dssp HTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHH
Confidence 00 1114444444444444 7999999999998544 1 1 34467888899999
Q ss_pred HccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010202 248 CKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAI 327 (515)
Q Consensus 248 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 327 (515)
...|++++|...|+++.+.. |+...|..+...+...|++++|++.++++.+.. +.+..++..+...+...|++++|.
T Consensus 248 ~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 324 (514)
T 2gw1_A 248 FLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAG 324 (514)
T ss_dssp HHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHH
T ss_pred HHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999998864 448889999999999999999999999998764 336778899999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010202 328 RITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKL 407 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 407 (515)
..++++.+.. +.+...+..+...|...|++++|...++ ...+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 325 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~-~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 325 KDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFS-EAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp HHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHH-HHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999998875 4567788899999999999999999999 554432 235678889999999999999999999999874
Q ss_pred CCCCCC----HHhHHHHHHHHHh---cCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010202 408 EHCKPN----VQTFHPLLKSCFK---TGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGH 480 (515)
Q Consensus 408 ~~~~p~----~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 480 (515)
.+..++ ...+..+...+.. .|++++|. ..++++.+.. +.+...+..+...+.+.|++++|.+.+++..+
T Consensus 402 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~-~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~- 477 (514)
T 2gw1_A 402 ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEAT-NLLEKASKLD--PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD- 477 (514)
T ss_dssp HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHH-HHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHH-HHHHHHHHhC--cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-
Confidence 311222 3378888999999 99999999 9999988742 23577888999999999999999999999987
Q ss_pred CCCCCHHH
Q 010202 481 DITPRYQT 488 (515)
Q Consensus 481 ~~~p~~~~ 488 (515)
+.|+...
T Consensus 478 -~~~~~~~ 484 (514)
T 2gw1_A 478 -LARTMEE 484 (514)
T ss_dssp -HCSSHHH
T ss_pred -hccccHH
Confidence 4566543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-21 Score=195.62 Aligned_cols=385 Identities=10% Similarity=0.032 Sum_probs=242.7
Q ss_pred hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010202 112 DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTF 191 (515)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 191 (515)
++++.|+..|..+.... +.++.++..+...|.+.|++++|.+.|+++...++.+..++..+...+...|++++|++.|
T Consensus 39 g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 116 (537)
T 3fp2_A 39 KNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL 116 (537)
T ss_dssp TCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 57788888888886322 4578889999999999999999999999998888888888888889999999999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-------CCCChh--------------------------
Q 010202 192 DELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSC-------IPPNAH-------------------------- 238 (515)
Q Consensus 192 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~-------------------------- 238 (515)
+.+.. .|+.. ...+..+...+....|...++.+... ..|+..
T Consensus 117 ~~~~~---~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (537)
T 3fp2_A 117 SVLSL---NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDT 191 (537)
T ss_dssp HHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCS
T ss_pred HHHhc---CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhcccccc
Confidence 64422 23221 11222333334445555555553211 011111
Q ss_pred ----hHHHHHHHHHcc--------CChhHHHHHHHHHHhCCCCcc--------HhHHHHHHHHHHhcCChhHHHHHHHHH
Q 010202 239 ----TFNIFIHGWCKI--------NRVDEAQWTIQEMKGHGCHPC--------VISYSTIIQSYCRQYNFSKVYELLDEM 298 (515)
Q Consensus 239 ----~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m 298 (515)
....+...+... |++++|..+++++.+.. |+ ..+|..+...+...|++++|++.+++.
T Consensus 192 ~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~ 269 (537)
T 3fp2_A 192 AYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQES 269 (537)
T ss_dssp SHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 222222222221 36677777777776653 22 224555666667777777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCH
Q 010202 299 QAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDT 378 (515)
Q Consensus 299 ~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 378 (515)
.+. .|+..++..+...+...|++++|.+.++++.+.. +.+..++..+...|...|++++|...|+ ...... +.+.
T Consensus 270 ~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~-~a~~~~-~~~~ 344 (537)
T 3fp2_A 270 INL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQ-KAQSLN-PENV 344 (537)
T ss_dssp HHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHC-TTCS
T ss_pred Hhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHhC-CCCH
Confidence 765 3446667777777777777777777777777654 4456677777777777777777777777 443322 1234
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCC----CHHHH
Q 010202 379 STFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSL----DITTY 454 (515)
Q Consensus 379 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p----~~~~~ 454 (515)
..|..+...+...|++++|++.++++.+.. +.+...+..+...+...|++++|. ..++++.+..+-.+ ....+
T Consensus 345 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~~~~~~~~~~~~~~~~~ 421 (537)
T 3fp2_A 345 YPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAI-KQYDIAKRLEEVQEKIHVGIGPL 421 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHHCSSCSSTTHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHH-HHHHHHHHcCCcchhhHHHHHHH
Confidence 567777777777777777777777777643 334556667777777777777777 67776655221111 12223
Q ss_pred HHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010202 455 TLVIHGLCRA----------NKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVMKK 514 (515)
Q Consensus 455 ~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 514 (515)
......+.+. |++++|...+++..+.. +.+..++..+...+...|++++|.+.++...+
T Consensus 422 ~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 422 IGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444556666 77777777777776532 33455666666777777777777777776543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-19 Score=172.71 Aligned_cols=329 Identities=11% Similarity=0.036 Sum_probs=207.4
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 010202 133 SSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDT 212 (515)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 212 (515)
|+..+..+...+.+.|++++|...|+++...++.+..++..+...+...|++++|+..|+++.+.. +.+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 355667777778888888888888888877777777777777788888888888888888777653 3356777777777
Q ss_pred HHHcCCHHHHHHHHHHhhcCCC---CChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChh
Q 010202 213 LCKEGKVELARSVFLELKSCIP---PNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFS 289 (515)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 289 (515)
+...|++++|...+++.....+ .+...+..+...+. ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 7778888888888777554444 34444444421100 011222234455555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhc
Q 010202 290 KVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEM 369 (515)
Q Consensus 290 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 369 (515)
+|++.++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|...|+ ..
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~-~a 214 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVR-EC 214 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH-HH
Confidence 5555555555432 2244455555555555555555555555555443 3344555555555555555555555555 33
Q ss_pred hhCCCCCCHHHH------------HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCC-H----HhHHHHHHHHHhcCChHH
Q 010202 370 PENGVAPDTSTF------------NTMITMFSHHGHHEKAFHVLEEMNKLEHCKPN-V----QTFHPLLKSCFKTGKTDE 432 (515)
Q Consensus 370 ~~~~~~~~~~~~------------~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~----~~~~~ll~~~~~~g~~~~ 432 (515)
.+.. +.+...+ ..+...+.+.|++++|.+.++++.+.. |+ . ..+..+...+...|++++
T Consensus 215 ~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 215 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE---PSVAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSSHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHHHHHHccCHHH
Confidence 2211 1122222 233566788889999999988888754 33 2 234456778888899999
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 010202 433 CLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPR-YQTCRLILDEVK 497 (515)
Q Consensus 433 A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~ 497 (515)
|+ ..+++..+.. +.+...|..+...+.+.|++++|.+.+++..+ +.|+ ...+..+..+..
T Consensus 291 A~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 291 AI-RICSEVLQME--PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQQIREGLEKAQR 351 (359)
T ss_dssp HH-HHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHHH
Confidence 88 8888887732 23577888888889999999999999999886 4555 445555555443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.8e-19 Score=166.19 Aligned_cols=314 Identities=14% Similarity=0.110 Sum_probs=227.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHH
Q 010202 169 NTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWC 248 (515)
Q Consensus 169 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 248 (515)
..+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++....|.+...+..+...+.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 344555666677777777777777766543 3356666666666677777777777776644444555666666666666
Q ss_pred ccCChhHHHHHHHHHHhCCCCc----cHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 010202 249 KINRVDEAQWTIQEMKGHGCHP----CVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFE 324 (515)
Q Consensus 249 ~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 324 (515)
+.|++++|...|++..+.. | +...+..+...+. ...+..+...+...|+++
T Consensus 83 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 6666666666666666542 3 2222222221110 112333467888999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 010202 325 EAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEM 404 (515)
Q Consensus 325 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 404 (515)
+|.+.++++.+.. +.+...+..+...|...|++++|...++ ...... +.+...+..+...+...|++++|.+.|++.
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~-~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLK-AASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH-HHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHH-HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999875 5678899999999999999999999999 655543 347889999999999999999999999999
Q ss_pred HhCCCCCCCHHhHH------------HHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCH--HHHHHHHHHHHhcCCHHHH
Q 010202 405 NKLEHCKPNVQTFH------------PLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDI--TTYTLVIHGLCRANKCEWA 470 (515)
Q Consensus 405 ~~~~~~~p~~~~~~------------~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A 470 (515)
.+.. +.+...+. .+...+.+.|++++|+ ..+++..+..+-.+.. ..+..+...+...|++++|
T Consensus 215 ~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 215 LKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT-SKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 9854 23333332 2366789999999999 9999998844322211 3355688899999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010202 471 YLLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVMKKL 515 (515)
Q Consensus 471 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~l 515 (515)
.+.+++..+.. +.+..+|..+...+...|++++|.+.++...++
T Consensus 292 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 292 IRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999998742 346778888888999999999999999987653
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-19 Score=180.93 Aligned_cols=386 Identities=11% Similarity=0.040 Sum_probs=284.1
Q ss_pred hcCCCCH--HHHHHHhhccccCCCCcC-CHHHHHHHHHHhh--hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCC
Q 010202 74 VHVGSSE--DEVFQSLKQDHVCNAIQP-SHYLVNKLIHRFK--DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVR 148 (515)
Q Consensus 74 ~~~~~~~--~~~~~~~~~~~~~~g~~p-~~~~~~~ll~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 148 (515)
...+... ...|+..... .| +...+..+-..+. ++++.|+..++.+.... +.++.++..+...|.+.|
T Consensus 36 ~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g 107 (537)
T 3fp2_A 36 FTAKNFNEAIKYYQYAIEL------DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASANESLG 107 (537)
T ss_dssp HHTTCCC-CHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHHHHHHHhh------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHcC
Confidence 4444444 4467776653 34 4455555444443 69999999999986332 457889999999999999
Q ss_pred ChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------CCCCCHHHH----------------
Q 010202 149 QMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTF------GLEKNTETM---------------- 206 (515)
Q Consensus 149 ~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~~~~~~~---------------- 206 (515)
++++|...|+ ....++...... +..+...+...+|+..++.+... ...|+....
T Consensus 108 ~~~~A~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (537)
T 3fp2_A 108 NFTDAMFDLS-VLSLNGDFDGAS---IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV 183 (537)
T ss_dssp CHHHHHHHHH-HHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred CHHHHHHHHH-HHhcCCCCChHH---HHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence 9999999997 444444333332 44556666678888888888553 112222221
Q ss_pred --------------HHHHHHHH--------HcCCHHHHHHHHHHhhcCCCCChh-------hHHHHHHHHHccCChhHHH
Q 010202 207 --------------NLLLDTLC--------KEGKVELARSVFLELKSCIPPNAH-------TFNIFIHGWCKINRVDEAQ 257 (515)
Q Consensus 207 --------------~~ll~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~ 257 (515)
..+...+. ..|++++|..+++++....|.+.. ++..+...+...|++++|.
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 263 (537)
T 3fp2_A 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQ 263 (537)
T ss_dssp CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHH
Confidence 12221211 124788999999987665555544 4667778888999999999
Q ss_pred HHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010202 258 WTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVG 337 (515)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 337 (515)
..|++..+. .|+...|..+...+...|++++|++.++++.+.. +.+..++..+...+...|++++|.+.++++.+..
T Consensus 264 ~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 340 (537)
T 3fp2_A 264 VLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340 (537)
T ss_dssp HHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 999999886 4668889999999999999999999999998764 3467889999999999999999999999999875
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC----C
Q 010202 338 SKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKP----N 413 (515)
Q Consensus 338 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p----~ 413 (515)
+.+...+..+...|...|++++|...++ ...+.. +.+...+..+...+...|++++|.+.|+++.+..+..+ .
T Consensus 341 -~~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 417 (537)
T 3fp2_A 341 -PENVYPYIQLACLLYKQGKFTESEAFFN-ETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG 417 (537)
T ss_dssp -TTCSHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSST
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHH
Confidence 4557788999999999999999999999 555432 33567888999999999999999999999877431111 1
Q ss_pred HHhHHHHHHHHHhc----------CChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010202 414 VQTFHPLLKSCFKT----------GKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGH 480 (515)
Q Consensus 414 ~~~~~~ll~~~~~~----------g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 480 (515)
...+......+... |++++|+ ..+++..+.. +.+...|..+...+.+.|++++|.+.+++..+.
T Consensus 418 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~-~~~~~a~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 418 IGPLIGKATILARQSSQDPTQLDEEKFNAAI-KLLTKACELD--PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp THHHHHHHHHHHHHHTC----CCHHHHHHHH-HHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccchhhhHhHHHHHH-HHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 12234445667777 9999999 9999998842 235778999999999999999999999999873
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.4e-19 Score=166.63 Aligned_cols=288 Identities=11% Similarity=0.011 Sum_probs=195.5
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 010202 130 YEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLL 209 (515)
Q Consensus 130 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 209 (515)
.+.++.++..+...+...|++++|.++|+++...++.+...+..++..+...|++++|...++++.+.. +.+...+..+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 344556677778888888888888888888887777666666666778888888888888888887753 3456777777
Q ss_pred HHHHHHcC-CHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCCh
Q 010202 210 LDTLCKEG-KVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNF 288 (515)
Q Consensus 210 l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 288 (515)
...+...| ++++|...|++.....+.+...|..+...+...|++++|...+++..+.. +.+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 88888888 78888888888665556667778888888888888888888888877653 23455666677777788888
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CCCCHHHHHHHHHHHHhcCCHHH
Q 010202 289 SKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVG--------SKPDSRFFNCLIYTLGRASRVQE 360 (515)
Q Consensus 289 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~ 360 (515)
++|++.+++..+.. +.+..++..+...+...|++++|...++++.+.. .+....++..+...|.+.|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 88888888777653 3356677777777777777777777777766531 02234556666666666666666
Q ss_pred HHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHH
Q 010202 361 AVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSC 424 (515)
Q Consensus 361 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~ 424 (515)
|...++ ...+.. +.+...|..+...+...|++++|.+.|++..+.. +.+...+..+..++
T Consensus 255 A~~~~~-~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 255 ALDYHR-QALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR--RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHH-HHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC--SCCHHHHHHHHHHH
T ss_pred HHHHHH-HHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC--CCchHHHHHHHHHH
Confidence 666666 333321 1244556666666666666666666666665532 22344444444444
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.5e-18 Score=161.45 Aligned_cols=293 Identities=10% Similarity=0.019 Sum_probs=182.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHH
Q 010202 201 KNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQ 280 (515)
Q Consensus 201 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 280 (515)
.+...+..+...+...|++++|.++|+++....|.+...+..++..+.+.|++++|..+++++.+.. +.+...|..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 3444455556666666666666666666544445555566666666666666666666666665542 234556666666
Q ss_pred HHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 010202 281 SYCRQY-NFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQ 359 (515)
Q Consensus 281 ~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 359 (515)
.+...| ++++|++.|++..+.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+..+...|...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 666666 6666666666666543 2244556666666667777777777777666653 333455555666677777777
Q ss_pred HHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-------CCCCHHhHHHHHHHHHhcCChHH
Q 010202 360 EAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEH-------CKPNVQTFHPLLKSCFKTGKTDE 432 (515)
Q Consensus 360 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------~~p~~~~~~~ll~~~~~~g~~~~ 432 (515)
+|...++ ...+.. +.+...+..+...+...|++++|...++++.+... .+.+..++..+...+...|++++
T Consensus 177 ~A~~~~~-~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFS-QALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHH-HHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHH-HHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 7777776 443332 23456677777777777777777777777665210 02334567777777888888888
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH-HhcCCHH
Q 010202 433 CLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITP-RYQTCRLILDEV-KQKHMYD 503 (515)
Q Consensus 433 A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~-~~~g~~~ 503 (515)
|+ ..+++..+.. +.+...|..+...+.+.|++++|.+.+++..+ +.| +...+..+..++ ...|+.+
T Consensus 255 A~-~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 255 AL-DYHRQALVLI--PQNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HH-HHHHHHHHHS--TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HH-HHHHHHHhhC--ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHHHHHhCchh
Confidence 87 7777777632 22456677778888888888888888887765 344 445555555555 3455543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-15 Score=150.11 Aligned_cols=337 Identities=12% Similarity=0.068 Sum_probs=216.4
Q ss_pred hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCC
Q 010202 112 DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGK----VRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSG----AGQ 183 (515)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~ 183 (515)
++.+.|...|..+... .++..+..|..+|.. .+++++|.+.|++..+.+ +..++..+...|.. .++
T Consensus 57 ~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~ 130 (490)
T 2xm6_A 57 KDLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--LPQAQQNLGVMYHEGNGVKVD 130 (490)
T ss_dssp CCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCC
Confidence 3666777777766432 245666677777766 677777777777766543 45555556666666 667
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc----cCChhH
Q 010202 184 WEDAVRTFDELGTFGLEKNTETMNLLLDTLCK----EGKVELARSVFLELKSCIPPNAHTFNIFIHGWCK----INRVDE 255 (515)
Q Consensus 184 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~ 255 (515)
+++|+++|++..+.| +...+..+...|.. .++.++|.+.|++.... .+...+..|...|.. .++.++
T Consensus 131 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~ 205 (490)
T 2xm6_A 131 KAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAI 205 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHH
Confidence 777777777776654 45566666666665 56777777777763321 356666667777766 677777
Q ss_pred HHHHHHHHHhCCCCccHhHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 010202 256 AQWTIQEMKGHGCHPCVISYSTIIQSYCR----QYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAK----SGDFEEAI 327 (515)
Q Consensus 256 A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~ 327 (515)
|..+|++..+.| +...+..+...|.. .+++++|+++|++..+.| +...+..+...|.. .++.++|.
T Consensus 206 A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~ 279 (490)
T 2xm6_A 206 SAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKAL 279 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHH
Confidence 777777776654 45566666666664 667777777777766553 44555556666665 67777777
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCC---CHHHHHH
Q 010202 328 RITEKMKIVGSKPDSRFFNCLIYTLGRA-----SRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHG---HHEKAFH 399 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~ 399 (515)
+.|++..+.| +...+..+...|... +++++|...|+ ...+.+ +...+..+...|...| ++++|++
T Consensus 280 ~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~-~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~ 352 (490)
T 2xm6_A 280 EWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYT-KSAEQG---DATAQANLGAIYFRLGSEEEHKKAVE 352 (490)
T ss_dssp HHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHH-HHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred HHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH-HHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHH
Confidence 7777766543 344555666666665 67777777776 444432 4455666666666555 6677777
Q ss_pred HHHHHHhCCCCCCCHHhHHHHHHHHHh----cCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 010202 400 VLEEMNKLEHCKPNVQTFHPLLKSCFK----TGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCR----ANKCEWAY 471 (515)
Q Consensus 400 ~~~~m~~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~ 471 (515)
+|++..+.| +...+..+...|.. .+++++|+ ..+++..+ .+ +...+..+...|.+ .+++++|.
T Consensus 353 ~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~-~~~~~A~~-~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~ 423 (490)
T 2xm6_A 353 WFRKAAAKG----EKAAQFNLGNALLQGKGVKKDEQQAA-IWMRKAAE-QG---LSAAQVQLGEIYYYGLGVERDYVQAW 423 (490)
T ss_dssp HHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHH-HHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHH-HHHHHHHh-CC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 777776643 34556666666666 66777777 67777666 22 45566666666666 67777777
Q ss_pred HHHHHHHhCC
Q 010202 472 LLFKEMIGHD 481 (515)
Q Consensus 472 ~~~~~m~~~~ 481 (515)
++|++..+.+
T Consensus 424 ~~~~~A~~~~ 433 (490)
T 2xm6_A 424 AWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHCC
Confidence 7777776644
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=7.3e-19 Score=167.96 Aligned_cols=288 Identities=12% Similarity=0.046 Sum_probs=145.2
Q ss_pred cCCHHHHHH-HHHHHhhCCC-CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHH
Q 010202 181 AGQWEDAVR-TFDELGTFGL-EK--NTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEA 256 (515)
Q Consensus 181 ~g~~~~A~~-~~~~m~~~g~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 256 (515)
.|++++|++ .|++...... .| +...+..+...+...|++++|...|+++....|.+..++..+..++.+.|++++|
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 355555555 5554433210 01 2233445555555666666666666554444455555566666666666666666
Q ss_pred HHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHHhcC
Q 010202 257 QWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTT---------------VMSYLAKSG 321 (515)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~---------------li~~~~~~g 321 (515)
...|+++.+.. +.+..+|..+...+...|++++|++.++++...... +...+.. .+..+...|
T Consensus 118 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 118 ISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 66666555443 234555555666666666666666666665554211 1111110 122222556
Q ss_pred CHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 010202 322 DFEEAIRITEKMKIVGSKP-DSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHV 400 (515)
Q Consensus 322 ~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 400 (515)
++++|...++++.+..... +..++..+...|.+.|++++|...|+ ...... +.+...|..+...+...|++++|++.
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFT-AALSVR-PNDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666665543111 35555666666666666666666665 333221 12345566666666666666666666
Q ss_pred HHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCC---------CCHHHHHHHHHHHHhcCCHHHHH
Q 010202 401 LEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLS---------LDITTYTLVIHGLCRANKCEWAY 471 (515)
Q Consensus 401 ~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~---------p~~~~~~~li~~~~~~g~~~~A~ 471 (515)
|+++.+.. +.+...+..+...+.+.|++++|. ..+++..+..+-. .....|..+..++...|++++|.
T Consensus 274 ~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 274 YRRALELQ--PGYIRSRYNLGISCINLGAHREAV-EHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 66665532 334455555666666666666666 5555554421100 01345556666666666666665
Q ss_pred HHHH
Q 010202 472 LLFK 475 (515)
Q Consensus 472 ~~~~ 475 (515)
.+++
T Consensus 351 ~~~~ 354 (368)
T 1fch_A 351 AADA 354 (368)
T ss_dssp HHHT
T ss_pred HhHH
Confidence 5544
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-18 Score=166.80 Aligned_cols=267 Identities=7% Similarity=-0.046 Sum_probs=192.1
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010202 236 NAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMS 315 (515)
Q Consensus 236 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 315 (515)
+...+..+...+.+.|++++|...|+++.+.. +.+..+|..+...|...|++++|++.|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44557777778888888888888888877653 3466777888888888888888888888877653 335677777888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCC-CCCCHHHHHHHH
Q 010202 316 YLAKSGDFEEAIRITEKMKIVGSK---------PDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENG-VAPDTSTFNTMI 385 (515)
Q Consensus 316 ~~~~~g~~~~a~~~~~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~li 385 (515)
.|...|++++|.+.++++.+.... .....+..+...|.+.|++++|...|+ ...... ..++...+..+.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYL-EAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHH-HHHHHSCSSCCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHH-HHHHhCcCccCHHHHHHHH
Confidence 888888888888888887764210 012233445778888899999999998 544432 112578888888
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 010202 386 TMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRAN 465 (515)
Q Consensus 386 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 465 (515)
..|...|++++|++.|+++.+.. +.+..++..+..++...|++++|+ ..+++..+.. +.+...|..+..+|.+.|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~--p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAV-EAYTRALEIQ--PGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHC--TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcC--CCchHHHHHHHHHHHHCC
Confidence 89999999999999999988854 456778888889999999999998 8888887732 224778888899999999
Q ss_pred CHHHHHHHHHHHHhCC---CC--------CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010202 466 KCEWAYLLFKEMIGHD---IT--------PRYQTCRLILDEVKQKHMYDAAEKIEA 510 (515)
Q Consensus 466 ~~~~A~~~~~~m~~~~---~~--------p~~~~~~~ll~~~~~~g~~~~a~~~~~ 510 (515)
++++|.+.++++.+.. .. .+..+|..+..++...|+.+.+.++.+
T Consensus 296 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 296 AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp CCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999887521 01 135678888888889999988887764
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.4e-15 Score=148.33 Aligned_cols=350 Identities=10% Similarity=0.012 Sum_probs=270.6
Q ss_pred CHHHHHHHHHHHHc----CCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHH
Q 010202 133 SSEIYEMMVDILGK----VRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSG----AGQWEDAVRTFDELGTFGLEKNTE 204 (515)
Q Consensus 133 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~ 204 (515)
++..+..+...|.. .+++++|...|+...+. .+..++..+...|.. .+++++|+++|++..+.| +..
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 112 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQ 112 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 66777777777777 78899999999888765 356677777888888 888999999998888754 667
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc----cCChhHHHHHHHHHHhCCCCccHhHHH
Q 010202 205 TMNLLLDTLCK----EGKVELARSVFLELKSCIPPNAHTFNIFIHGWCK----INRVDEAQWTIQEMKGHGCHPCVISYS 276 (515)
Q Consensus 205 ~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 276 (515)
.+..+...|.. .+++++|...|++.... .+...+..|...|.. .+++++|.+.|++..+.| +...+.
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 77778888887 78899999998884332 366778888888877 788899999998888865 677788
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 010202 277 TIIQSYCR----QYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAK----SGDFEEAIRITEKMKIVGSKPDSRFFNCL 348 (515)
Q Consensus 277 ~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 348 (515)
.+...|.. .+++++|+++|++..+.| +..++..+...|.. .+++++|.++|++..+.+ +...+..+
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~l 261 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRL 261 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 88888887 788899999998888765 56677777777776 788899999998888754 45566667
Q ss_pred HHHHHh----cCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHhCCCCCCCHHhHHH
Q 010202 349 IYTLGR----ASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHH-----GHHEKAFHVLEEMNKLEHCKPNVQTFHP 419 (515)
Q Consensus 349 i~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~p~~~~~~~ 419 (515)
...|.. .++.++|...|+ ...+. -+...+..+...|... +++++|+.+|++..+.| +...+..
T Consensus 262 g~~y~~g~~~~~d~~~A~~~~~-~a~~~---~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~----~~~a~~~ 333 (490)
T 2xm6_A 262 GYILEQGLAGAKEPLKALEWYR-KSAEQ---GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG----DATAQAN 333 (490)
T ss_dssp HHHHHHTTTSSCCHHHHHHHHH-HHHTT---TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT----CHHHHHH
T ss_pred HHHHHCCCCCCCCHHHHHHHHH-HHHHc---CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC----CHHHHHH
Confidence 777777 788999999998 55543 3566777777778776 88999999999888865 2345666
Q ss_pred HHHHHHhcC---ChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010202 420 LLKSCFKTG---KTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCR----ANKCEWAYLLFKEMIGHDITPRYQTCRLI 492 (515)
Q Consensus 420 ll~~~~~~g---~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 492 (515)
+...+...| +.++|+ +.+++..+ . .+...+..+...|.. .+++++|.+++++..+.| +...+..+
T Consensus 334 lg~~y~~~g~~~~~~~A~-~~~~~a~~-~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~L 405 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAV-EWFRKAAA-K---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQL 405 (490)
T ss_dssp HHHHHHHSCCHHHHHHHH-HHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHH-HHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 666676656 778888 88888877 2 367778888888888 788999999999888754 46677777
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHh
Q 010202 493 LDEVKQ----KHMYDAAEKIEAVMKK 514 (515)
Q Consensus 493 l~~~~~----~g~~~~a~~~~~~m~~ 514 (515)
...+.. .+++++|.+.++...+
T Consensus 406 g~~y~~g~g~~~d~~~A~~~~~~A~~ 431 (490)
T 2xm6_A 406 GEIYYYGLGVERDYVQAWAWFDTAST 431 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 777776 7888999888877643
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4.7e-18 Score=162.31 Aligned_cols=278 Identities=14% Similarity=0.025 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 010202 135 EIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLC 214 (515)
Q Consensus 135 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 214 (515)
..+..+...|.+.|++++|...|+++.+.++.+..++..+...+.+.|++++|++.|+++.+.. +.+..++..+...+.
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT 143 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3455555556666666666666666655555555555555666666666666666666555543 334555555555566
Q ss_pred HcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHH
Q 010202 215 KEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYEL 294 (515)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 294 (515)
..|++++|...++++....+.+...+..+... .. .. . ....+.. +..+...|++++|++.
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-------~~-------~~----~-~~~~~~~-~~~~~~~~~~~~A~~~ 203 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEG-------AG-------GA----G-LGPSKRI-LGSLLSDSLFLEVKEL 203 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC----------------------------------CT-THHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH-------hh-------hh----c-ccHHHHH-HHHHhhcccHHHHHHH
Confidence 66666666666655433333333222211000 00 00 0 0000011 2222256666666666
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCC
Q 010202 295 LDEMQAQGCPP-NVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENG 373 (515)
Q Consensus 295 ~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 373 (515)
++++.+..... +..++..+...+...|++++|...++++.+.. +.+..++..+...|.+.|++++|...|+ ......
T Consensus 204 ~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~-~al~~~ 281 (368)
T 1fch_A 204 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYR-RALELQ 281 (368)
T ss_dssp HHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHC
T ss_pred HHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHhC
Confidence 66665542111 35566666666666666666666666666543 3445566666666666666666666666 333321
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCC-----------HHhHHHHHHHHHhcCChHHHHHHHHH
Q 010202 374 VAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPN-----------VQTFHPLLKSCFKTGKTDECLSQLLD 439 (515)
Q Consensus 374 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-----------~~~~~~ll~~~~~~g~~~~A~~~~~~ 439 (515)
+.+...+..+...|.+.|++++|...|+++.+.. +.+ ..+|..+..++...|+.++|. .++.
T Consensus 282 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~ 354 (368)
T 1fch_A 282 -PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ--RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG-AADA 354 (368)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HTC------CCCCCHHHHHHHHHHHHHHTCGGGHH-HHHT
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCCCccccccchhhHHHHHHHHHHHHhCChHhHH-HhHH
Confidence 2345566666666666666666666666665532 111 456666667777777776665 4443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-15 Score=153.27 Aligned_cols=403 Identities=11% Similarity=0.058 Sum_probs=291.2
Q ss_pred CHHHHHHHHHHhh-hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 010202 99 SHYLVNKLIHRFK-DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRR 177 (515)
Q Consensus 99 ~~~~~~~ll~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~ 177 (515)
|...|..++.... ++.+.|..+++.+.. -+|.+...|..++..+.+.|++++|+.+|+++....+ +...+...+..
T Consensus 12 ~~~~w~~l~~~~~~~~~~~a~~~~e~al~--~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~ 88 (530)
T 2ooe_A 12 DLDAWSILIREAQNQPIDKARKTYERLVA--QFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSY 88 (530)
T ss_dssp CHHHHHHHHHHHHSSCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHH
Confidence 5667877777543 589999999999974 3466889999999999999999999999999988776 66655444432
Q ss_pred -HHhcCCHHHHHH----HHHHHhhC-CCCC-CHHHHHHHHHHHHH---------cCCHHHHHHHHHHhhcCCCCC--hhh
Q 010202 178 -FSGAGQWEDAVR----TFDELGTF-GLEK-NTETMNLLLDTLCK---------EGKVELARSVFLELKSCIPPN--AHT 239 (515)
Q Consensus 178 -~~~~g~~~~A~~----~~~~m~~~-g~~~-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~--~~~ 239 (515)
....|+.++|.+ +|+..... |..| +...|...+....+ .|+++.|..+|++... .|.+ ...
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~ 167 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQL 167 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHH
Confidence 234577666654 77776543 5444 56778777776655 6889999999999554 3322 234
Q ss_pred HHHHHHHH-------------HccCChhHHHHHHHHHH------hCC---CCcc--------HhHHHHHHHHHHhc----
Q 010202 240 FNIFIHGW-------------CKINRVDEAQWTIQEMK------GHG---CHPC--------VISYSTIIQSYCRQ---- 285 (515)
Q Consensus 240 ~~~li~~~-------------~~~g~~~~A~~~~~~~~------~~~---~~~~--------~~~~~~li~~~~~~---- 285 (515)
|....... .+.++++.|..++.++. +.. ++|+ ...|...+......
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 43332211 13456777877776632 221 2343 24566655443322
Q ss_pred CCh----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhcCCCCCHHHHHH
Q 010202 286 YNF----SKVYELLDEMQAQGCPPNVVTYTTVMSYLAK-------SGDFE-------EAIRITEKMKIVGSKPDSRFFNC 347 (515)
Q Consensus 286 g~~----~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~ 347 (515)
++. +++..+|++.... .+-+...|...+..+.+ .|+++ +|.+++++..+.-.+.+...|..
T Consensus 248 ~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~ 326 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA 326 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHH
Confidence 232 3778899988875 23467888888888775 69977 89999999986323556889999
Q ss_pred HHHHHHhcCCHHHHHHHHHhhchhCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHH-H
Q 010202 348 LIYTLGRASRVQEAVYVYQVEMPENGVAPD--TSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKS-C 424 (515)
Q Consensus 348 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~-~ 424 (515)
++..+.+.|++++|..+|+ ...+. .|+ ...|...+..+.+.|++++|.++|++..+.. +.+...|...... +
T Consensus 327 ~~~~~~~~g~~~~A~~~~~-~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~~~~~~~~~a~~~~ 401 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYN-RLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEY 401 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHH-HHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TCCTHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHH-HHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CCchHHHHHHHHHHH
Confidence 9999999999999999999 66553 343 3589999999999999999999999999854 2223333332222 3
Q ss_pred HhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcCC
Q 010202 425 FKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHD-ITPR--YQTCRLILDEVKQKHM 501 (515)
Q Consensus 425 ~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~g~ 501 (515)
...|+.++|. .+|+...+..+ .+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+
T Consensus 402 ~~~~~~~~A~-~~~e~al~~~p--~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~ 478 (530)
T 2ooe_A 402 YCSKDKSVAF-KIFELGLKKYG--DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 478 (530)
T ss_dssp HHTCCHHHHH-HHHHHHHHHHT--TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC
T ss_pred HHcCChhHHH-HHHHHHHHHCC--CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 3689999999 99999988432 357889999999999999999999999999753 2332 4478888888888999
Q ss_pred HHHHHHHHHHHHh
Q 010202 502 YDAAEKIEAVMKK 514 (515)
Q Consensus 502 ~~~a~~~~~~m~~ 514 (515)
.+.+.++.+.+.+
T Consensus 479 ~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 479 LASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-17 Score=155.38 Aligned_cols=265 Identities=9% Similarity=-0.022 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 010202 134 SEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTL 213 (515)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 213 (515)
...+..+...+.+.|++++|..+|+++.+.++.+..++..+...+.+.|++++|.+.|+++.+.. +.+..++..+...+
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 34456677778888888888888888887777777888888888888888888888888887753 44677788888888
Q ss_pred HHcCCHHHHHHHHHHhhcCCCCChhhHHHH--------------HH-HHHccCChhHHHHHHHHHHhCCCCccHhHHHHH
Q 010202 214 CKEGKVELARSVFLELKSCIPPNAHTFNIF--------------IH-GWCKINRVDEAQWTIQEMKGHGCHPCVISYSTI 278 (515)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 278 (515)
...|++++|.+.++++....+.+...+..+ .. .+...|++++|...++++.+.. +.+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 888888888888888555444444444444 22 2555566666666666655543 2245555566
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 010202 279 IQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRV 358 (515)
Q Consensus 279 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 358 (515)
...+...|++++|++.++++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+..++..+...|.+.|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccH
Confidence 666666666666666666655442 2234555555555566666666666666555543 33445555555555555555
Q ss_pred HHHHHHHHhhchhCCCCC-----------CHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 010202 359 QEAVYVYQVEMPENGVAP-----------DTSTFNTMITMFSHHGHHEKAFHVLEE 403 (515)
Q Consensus 359 ~~A~~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~ 403 (515)
++|...|+ ......... +...|..+..++.+.|++++|..++++
T Consensus 257 ~~A~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 257 DLAAKQLV-RAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHH-HHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHH-HHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 55555555 322211110 234555555555555555555555543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.1e-18 Score=161.46 Aligned_cols=230 Identities=9% Similarity=-0.091 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 010202 134 SEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTL 213 (515)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 213 (515)
...+..+...+.+.|++++|...|+++...++.+..++..+...|.+.|++++|++.|+++.+.. +.+..++..+..+|
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34567777777778888888888888777777777777777777777888888888877777653 34567777777777
Q ss_pred HHcCCHHHHHHHHHHhhcCCCCChhh----------HHHHHHHHHccCChhHHHHHHHHHHhCCCC-ccHhHHHHHHHHH
Q 010202 214 CKEGKVELARSVFLELKSCIPPNAHT----------FNIFIHGWCKINRVDEAQWTIQEMKGHGCH-PCVISYSTIIQSY 282 (515)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~~~~~~~----------~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~ 282 (515)
...|++++|...|+++....+.+... +..+...+.+.|++++|...|+++.+.... ++..+|..+...|
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 77777777777777743322222222 223355666666666666666666554211 1355566666666
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010202 283 CRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAV 362 (515)
Q Consensus 283 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 362 (515)
...|++++|++.|++..+.. +.+..++..+..+|...|++++|...++++.+.. +.+..++..+...|.+.|++++|.
T Consensus 224 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence 66666666666666655542 2245555666666666666666666666655542 333555555555555666666665
Q ss_pred HHHH
Q 010202 363 YVYQ 366 (515)
Q Consensus 363 ~~~~ 366 (515)
..|+
T Consensus 302 ~~~~ 305 (365)
T 4eqf_A 302 SNFL 305 (365)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5555
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=5.4e-18 Score=159.15 Aligned_cols=347 Identities=10% Similarity=0.088 Sum_probs=150.2
Q ss_pred CHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010202 113 DWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFD 192 (515)
Q Consensus 113 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 192 (515)
+.++|.++++.+ +++.+|+.|+.++.+.|++++|++.|.+. .+..++..++..+...|++++|++.++
T Consensus 18 ~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 18 NLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 456677776655 23458888888888888888888888643 344456666777888888888888776
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccH
Q 010202 193 ELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCV 272 (515)
Q Consensus 193 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 272 (515)
..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------- 148 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------- 148 (449)
T ss_dssp -------------------------CHHHHTTTTT------CC----------------CTTTHHHHHHHT---------
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------
Confidence 66553 4556777788888888888888776663 366678888888888888888888888866
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 010202 273 ISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTL 352 (515)
Q Consensus 273 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 352 (515)
..|..++.++.+.|++++|++.++++ .++.+|..++.+|...|+++.|...... +...+.-...++..|
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Y 217 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYY 217 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHH
Confidence 25888888888888888888888877 2677888888888888888888544433 223333345677888
Q ss_pred HhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC------CHHhHHHHHHHHHh
Q 010202 353 GRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKP------NVQTFHPLLKSCFK 426 (515)
Q Consensus 353 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p------~~~~~~~ll~~~~~ 426 (515)
.+.|++++|..+++..+ ... +.....|+-+.-.|++- ++++..+-++.....=.++| +...|..+...|.+
T Consensus 218 ek~G~~eEai~lLe~aL-~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~ 294 (449)
T 1b89_A 218 QDRGYFEELITMLEAAL-GLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDK 294 (449)
T ss_dssp HHTTCHHHHHHHHHHHT-TST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHh-CCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888887333 222 33466777777777654 34443333333322110333 34557777777778
Q ss_pred cCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010202 427 TGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAE 506 (515)
Q Consensus 427 ~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 506 (515)
.++++.|+ . .|.+......+...|- +...+..+.+--.+...=.+ +..|.. .+-|+.++...=|...+.
T Consensus 295 ~~e~d~A~-~---tm~~h~~~a~~~~~f~---~~~~kv~n~elyYkai~fyl--~~~p~~--l~~ll~~l~~~ld~~r~v 363 (449)
T 1b89_A 295 YEEYDNAI-I---TMMNHPTDAWKEGQFK---DIITKVANVELYYRAIQFYL--EFKPLL--LNDLLMVLSPRLDHTRAV 363 (449)
T ss_dssp TTCHHHHH-H---HHHHSTTTTCCHHHHH---HHHHHCSSTHHHHHHHHHHH--HHCGGG--HHHHHHHHGGGCCHHHHH
T ss_pred hchHHHHH-H---HHHhCChhhhhhHHHH---HHHhchhHHHHHHHHHHHHH--hcCHHH--HHHHHHHHHhccCcHHHH
Confidence 88888766 2 4555222333444443 34455555554444433333 234444 667888887777888888
Q ss_pred HHHHHHH
Q 010202 507 KIEAVMK 513 (515)
Q Consensus 507 ~~~~~m~ 513 (515)
++++...
T Consensus 364 ~~~~~~~ 370 (449)
T 1b89_A 364 NYFSKVK 370 (449)
T ss_dssp HHHHHTT
T ss_pred HHHHHcC
Confidence 8877643
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.6e-16 Score=144.51 Aligned_cols=251 Identities=15% Similarity=0.162 Sum_probs=142.1
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCh
Q 010202 176 RRFSGAGQWEDAVRTFDELGTFGLEKN--TETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRV 253 (515)
Q Consensus 176 ~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 253 (515)
+-....|++..|+..++..... .|+ ......+.++|...|+++.|...++. ..+|+..++..+...+...|+.
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcH
Confidence 4444566666666666554432 232 22334455666666666666654322 2345555666666666666666
Q ss_pred hHHHHHHHHHHhCCCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010202 254 DEAQWTIQEMKGHGCHP-CVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEK 332 (515)
Q Consensus 254 ~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 332 (515)
++|.+.++++...+..| +...+..+...+...|++++|++.+++ +.+..++..++..+.+.|++++|.+.+++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666666666554323 344455555666666666666666655 34555666666666666666666666666
Q ss_pred HHhcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 010202 333 MKIVGSKPDSRF---FNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEH 409 (515)
Q Consensus 333 ~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 409 (515)
+.+.. |+... ...++..+...|++++|..+|+ .+.+. .+.+...|+.+..++.+.|++++|.+.|++..+..
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~-~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~- 230 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQ-EMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD- 230 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHH-HHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHH-HHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 66543 33211 1122233334466666666666 44433 23455666666666666666666666666666643
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010202 410 CKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVN 443 (515)
Q Consensus 410 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 443 (515)
+-+..++..++..+...|+.+++..++++++.+
T Consensus 231 -p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 231 -SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp -TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 334556666666666666665533256666655
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-16 Score=148.09 Aligned_cols=274 Identities=10% Similarity=0.042 Sum_probs=144.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCh
Q 010202 174 VMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRV 253 (515)
Q Consensus 174 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 253 (515)
+...+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|...++++....+.+..++..+...+...|++
T Consensus 27 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~ 105 (327)
T 3cv0_A 27 EGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 105 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCH
Confidence 3455555555555555555555432 224445555555555555555555555553333344445555555555555555
Q ss_pred hHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HH-HHHhcCCHHHHHHHHH
Q 010202 254 DEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTV-MS-YLAKSGDFEEAIRITE 331 (515)
Q Consensus 254 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-i~-~~~~~g~~~~a~~~~~ 331 (515)
++|...++++.+.. +.+...+..+... .|+......+ .. .+...|++++|.+.++
T Consensus 106 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 162 (327)
T 3cv0_A 106 NAALASLRAWLLSQ-PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYRECRTLLH 162 (327)
T ss_dssp HHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHHHHHHHH
Confidence 55555555554432 1111111111000 0000011111 11 2455566667777766
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Q 010202 332 KMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCK 411 (515)
Q Consensus 332 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 411 (515)
++.+.. +.+..++..+...|.+.|++++|...++ ...... +.+...|..+...+...|++++|.+.|+++.+.. +
T Consensus 163 ~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~-~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~ 237 (327)
T 3cv0_A 163 AALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLR-RAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN--P 237 (327)
T ss_dssp HHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred HHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHH-HHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C
Confidence 666553 3456666666666777777777777766 433321 2245666667777777777777777777766643 3
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCC----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010202 412 PNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLS----------LDITTYTLVIHGLCRANKCEWAYLLFKEM 477 (515)
Q Consensus 412 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~----------p~~~~~~~li~~~~~~g~~~~A~~~~~~m 477 (515)
.+...+..+...+...|++++|. ..+++..+..+-. .+...|..+..++.+.|++++|..++++.
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 238 GYVRVMYNMAVSYSNMSQYDLAA-KQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHhccHHHHH-HHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34566666667777777777777 6666665521110 02556667777777777777777766543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.4e-15 Score=146.16 Aligned_cols=362 Identities=9% Similarity=-0.014 Sum_probs=218.2
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHhc---------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----
Q 010202 131 EHSSEIYEMMVDILGKVRQMDQMRALLEEMSK---------GHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTF---- 197 (515)
Q Consensus 131 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 197 (515)
+.....||.|...+...|++++|++.|++..+ .++....++..+...|...|++++|+..+++..+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 33456788888888888888888888877543 23455667777788888888888888888776431
Q ss_pred -C--CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHhhcCCCCChhhHHHHHHHH---HccCChhHHHHHHHHHHhCCCC
Q 010202 198 -G--LEKNTETMNLLLDTLCKE--GKVELARSVFLELKSCIPPNAHTFNIFIHGW---CKINRVDEAQWTIQEMKGHGCH 269 (515)
Q Consensus 198 -g--~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~~~~~~~~ 269 (515)
+ ......++.....++... +++++|+..|++.....|.+...+..+..++ ...++.++|++.+++..+.. +
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 1 112345565555555544 4688888888885544556666666665553 34567778888888776653 3
Q ss_pred ccHhHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 010202 270 PCVISYSTIIQSYCR----QYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFF 345 (515)
Q Consensus 270 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 345 (515)
.+..++..+...+.. .+++++|.+.+++..... +.+..++..+...|...|++++|...+++..+.. +.+..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 345555555544443 456778888888877653 3356777888888888888888888888887764 4456666
Q ss_pred HHHHHHHHhc-------------------CCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010202 346 NCLIYTLGRA-------------------SRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNK 406 (515)
Q Consensus 346 ~~li~~~~~~-------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 406 (515)
..+...|... +..+.|...++ ...+.. +.+...+..+...|...|++++|++.|++..+
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~-~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLK-KADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH-HHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHH-HHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 6665555321 23456666666 333321 22445677778888888888888888888877
Q ss_pred CCCCCCCHHh----HHHHHH-HHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010202 407 LEHCKPNVQT----FHPLLK-SCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHD 481 (515)
Q Consensus 407 ~~~~~p~~~~----~~~ll~-~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 481 (515)
.. |+... +..+.. .....|+.++|+ ..+++..+ +.|+...... ..+.+.+++++..+..
T Consensus 363 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Ai-~~y~kal~---i~~~~~~~~~---------~~~~l~~~~~~~l~~~ 426 (472)
T 4g1t_A 363 KE---LTPVAKQLLHLRYGNFQLYQMKCEDKAI-HHFIEGVK---INQKSREKEK---------MKDKLQKIAKMRLSKN 426 (472)
T ss_dssp SC---CCHHHHHHHHHHHHHHHHHTSSCHHHHH-HHHHHHHH---SCCCCHHHHH---------HHHHHHHHHHHHHHHC
T ss_pred cC---CCChHHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHh---cCcccHHHHH---------HHHHHHHHHHHHHHhC
Confidence 44 33221 222222 234678888888 77777766 3344322211 1233344444444322
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010202 482 ITPRYQTCRLILDEVKQKHMYDAAEKIEAVMKK 514 (515)
Q Consensus 482 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 514 (515)
+.+..+|..+...+...|++++|++.+++..+
T Consensus 427 -p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe 458 (472)
T 4g1t_A 427 -GADSEALHVLAFLQELNEKMQQADEDSERGLE 458 (472)
T ss_dssp -C-CTTHHHHHHHHHHHHHHCC-----------
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34455677777777777777777777766543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=9e-17 Score=150.94 Aligned_cols=328 Identities=9% Similarity=0.086 Sum_probs=120.0
Q ss_pred HHHHHHHHHHhh--hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 010202 100 HYLVNKLIHRFK--DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRR 177 (515)
Q Consensus 100 ~~~~~~ll~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~ 177 (515)
+..|..+..++. +++..|.+.|.+. +|+..|..+++.+...|++++|++.++...+ ...+..+...++.+
T Consensus 32 ~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark-~~~~~~i~~~Li~~ 103 (449)
T 1b89_A 32 PAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARK-KARESYVETELIFA 103 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-hCccchhHHHHHHH
Confidence 345555555554 3555666665432 3555666666666666666666665544433 22233344445666
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHH
Q 010202 178 FSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQ 257 (515)
Q Consensus 178 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 257 (515)
|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+ ..|..++.++.+.|++++|.
T Consensus 104 Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AV 168 (449)
T 1b89_A 104 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAV 168 (449)
T ss_dssp -----CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHH
T ss_pred HHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHH
Confidence 666666666665552 355556666666666666666666666655 24666666666666666666
Q ss_pred HHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010202 258 WTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVG 337 (515)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 337 (515)
+.++++. ++.+|..++.+|...|+++.|...... +..++.-...++..|.+.|.+++|..+++......
T Consensus 169 ea~~KA~------~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le 237 (449)
T 1b89_A 169 DGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE 237 (449)
T ss_dssp HHHHHHT------CHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST
T ss_pred HHHHHcC------CchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc
Confidence 6666651 556666666666666666666443332 11223334456666666666666666666665443
Q ss_pred CCCCHHHHHHHHHHHHhc--CCHHHHHHHHHhhchhCCCCC------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 010202 338 SKPDSRFFNCLIYTLGRA--SRVQEAVYVYQVEMPENGVAP------DTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEH 409 (515)
Q Consensus 338 ~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 409 (515)
+.....|+-|.-.|++- ++..+..+.|.. .-+++| +...|..+...|.+.++++.|... |.+.
T Consensus 238 -~ah~~~ftel~il~~ky~p~k~~ehl~~~~~---~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h-- 308 (449)
T 1b89_A 238 -RAHMGMFTELAILYSKFKPQKMREHLELFWS---RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH-- 308 (449)
T ss_dssp -TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST---TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHS--
T ss_pred -HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhC--
Confidence 34455555555555542 334444444431 112222 234566666666666666666553 2231
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010202 410 CKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEM 477 (515)
Q Consensus 410 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 477 (515)
+|+..--........+..+.+--. +...-... ..|. ..+-|+.++...=+...+.+++++.
T Consensus 309 -~~~a~~~~~f~~~~~kv~n~elyY-kai~fyl~---~~p~--~l~~ll~~l~~~ld~~r~v~~~~~~ 369 (449)
T 1b89_A 309 -PTDAWKEGQFKDIITKVANVELYY-RAIQFYLE---FKPL--LLNDLLMVLSPRLDHTRAVNYFSKV 369 (449)
T ss_dssp -TTTTCCHHHHHHHHHHCSSTHHHH-HHHHHHHH---HCGG--GHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred -ChhhhhhHHHHHHHhchhHHHHHH-HHHHHHHh---cCHH--HHHHHHHHHHhccCcHHHHHHHHHc
Confidence 233222222333334444433221 11111111 1222 2555555555555666666655544
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-18 Score=174.73 Aligned_cols=117 Identities=15% Similarity=0.228 Sum_probs=61.0
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHh---CCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 010202 237 AHTFNIFIHGWCKINRVDEAQWTIQEMKG---HGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTV 313 (515)
Q Consensus 237 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 313 (515)
..+||+||++||+.|++++|.++|++|.+ .|+.||.+|||+||++|++.|++++|.++|++|.+.|+.||.+||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34455555555555555555555544432 244555555555555555555555555555555555555555555555
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 010202 314 MSYLAKSGD-FEEAIRITEKMKIVGSKPDSRFFNCLIYTLG 353 (515)
Q Consensus 314 i~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 353 (515)
|.++++.|+ .++|.++|++|.+.|+.||..+|+.++..+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e 247 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh
Confidence 555555554 2445555555555555555555555554433
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.75 E-value=7.5e-14 Score=140.05 Aligned_cols=404 Identities=8% Similarity=0.054 Sum_probs=280.6
Q ss_pred CCChhhHHHHHHHhcCCCCHHH--HHHHhhccccCCCCcCCHHHHHHHHHHhh--hCHHHHHHHHHHhccCCCCCCCHHH
Q 010202 61 SPRLPDIDVIISKVHVGSSEDE--VFQSLKQDHVCNAIQPSHYLVNKLIHRFK--DDWKSALGIFRWAGSCPGYEHSSEI 136 (515)
Q Consensus 61 ~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~g~~p~~~~~~~ll~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~ 136 (515)
+.++..|..++.....+....+ +|+++... .+-+...|...+..+. ++.+.|..+|+.+... .|++..
T Consensus 10 P~~~~~w~~l~~~~~~~~~~~a~~~~e~al~~-----~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~---~p~~~l 81 (530)
T 2ooe_A 10 PYDLDAWSILIREAQNQPIDKARKTYERLVAQ-----FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK---VLHIDL 81 (530)
T ss_dssp TTCHHHHHHHHHHHHSSCHHHHHHHHHHHHTT-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT---CCCHHH
T ss_pred CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCChHH
Confidence 4578889988875444444332 67766542 2335566777776654 5899999999999643 357888
Q ss_pred HHHHHHHH-HcCCChHHHHH----HHHHHhc---CCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHhhCCC
Q 010202 137 YEMMVDIL-GKVRQMDQMRA----LLEEMSK---GHIVTLNTIAKVMRRFSG---------AGQWEDAVRTFDELGTFGL 199 (515)
Q Consensus 137 ~~~li~~~-~~~g~~~~A~~----~~~~~~~---~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~ 199 (515)
|...+... ...|+.+.|++ +|+.... .++.+...+...+....+ .|++++|..+|++..+...
T Consensus 82 w~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~ 161 (530)
T 2ooe_A 82 WKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM 161 (530)
T ss_dssp HHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchh
Confidence 88887644 45677777665 7776644 234455665555555544 6889999999999988321
Q ss_pred CCCHHHHHHHHHHH-------------HHcCCHHHHHHHHHHh-------hcC---CCCC--------hhhHHHHHHHHH
Q 010202 200 EKNTETMNLLLDTL-------------CKEGKVELARSVFLEL-------KSC---IPPN--------AHTFNIFIHGWC 248 (515)
Q Consensus 200 ~~~~~~~~~ll~~~-------------~~~~~~~~a~~~~~~~-------~~~---~~~~--------~~~~~~li~~~~ 248 (515)
.+....|....... ...+++..|..++..+ ... ++|+ ...|...+....
T Consensus 162 ~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~ 241 (530)
T 2ooe_A 162 INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEK 241 (530)
T ss_dssp TTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHH
Confidence 11123443322211 1234567777776652 111 3444 245655554433
Q ss_pred cc----CCh----hHHHHHHHHHHhCCCCccHhHHHHHHHHHHh-------cCChh-------HHHHHHHHHHHCCCCCC
Q 010202 249 KI----NRV----DEAQWTIQEMKGHGCHPCVISYSTIIQSYCR-------QYNFS-------KVYELLDEMQAQGCPPN 306 (515)
Q Consensus 249 ~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~g~~~~ 306 (515)
.. ++. +.+..+|++..... +.+...|...+..+.+ .|+++ +|.++|++..+.-.+.+
T Consensus 242 ~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~ 320 (530)
T 2ooe_A 242 SNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN 320 (530)
T ss_dssp HCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC
T ss_pred cCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc
Confidence 22 233 36778898887752 4467888888888875 69987 89999999886323346
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHH
Q 010202 307 VVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDS-RFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMI 385 (515)
Q Consensus 307 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 385 (515)
...|..++..+.+.|++++|..+|+++.+.. +.+. .+|..++..+.+.|++++|..+|+ ...+.. +.+...|...+
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~-~Al~~~-~~~~~~~~~~a 397 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFK-KAREDA-RTRHHVYVTAA 397 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTCT-TCCTHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHH-HHHhcc-CCchHHHHHHH
Confidence 8889999999999999999999999999853 2233 588888998999999999999999 544432 11223333222
Q ss_pred H-HHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHH
Q 010202 386 T-MFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLD--ITTYTLVIHGLC 462 (515)
Q Consensus 386 ~-~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~--~~~~~~li~~~~ 462 (515)
. .+...|+.++|..+|++..+.. +.+...+..++..+.+.|+.++|. .+|++........|+ ...|...+....
T Consensus 398 ~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar-~~~~~al~~~~~~~~~~~~lw~~~~~~e~ 474 (530)
T 2ooe_A 398 LMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTR-VLFERVLTSGSLPPEKSGEIWARFLAFES 474 (530)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHH-HHHHHHHHSCCSCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHH-HHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 2 2346899999999999998854 345788889999999999999998 999999985444443 558988899999
Q ss_pred hcCCHHHHHHHHHHHHh
Q 010202 463 RANKCEWAYLLFKEMIG 479 (515)
Q Consensus 463 ~~g~~~~A~~~~~~m~~ 479 (515)
..|+.+.+..+.+++.+
T Consensus 475 ~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 475 NIGDLASILKVEKRRFT 491 (530)
T ss_dssp HSSCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999999875
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-13 Score=143.91 Aligned_cols=338 Identities=11% Similarity=0.085 Sum_probs=221.3
Q ss_pred hhCHHHHHHHHHHhccCCC-CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010202 111 KDDWKSALGIFRWAGSCPG-YEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVR 189 (515)
Q Consensus 111 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 189 (515)
.+.+.+++++++.+...+. +.-+....+.++....+. +..+..+..+.....+ . ..+...+...|.+++|..
T Consensus 998 aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~---~eIA~Iai~lglyEEAf~ 1070 (1630)
T 1xi4_A 998 ADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---A---PDIANIAISNELFEEAFA 1070 (1630)
T ss_pred CCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---H---HHHHHHHHhCCCHHHHHH
Confidence 3566666666666652221 223444555555444444 3344444444333111 1 113566777888888888
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCC
Q 010202 190 TFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCH 269 (515)
Q Consensus 190 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 269 (515)
+|++.. -.....+.++ -..+++++|.++.+++ .+..+|..+..++.+.|++++|.+.|.+.
T Consensus 1071 IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA------ 1131 (1630)
T 1xi4_A 1071 IFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------ 1131 (1630)
T ss_pred HHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------
Confidence 887752 1222223332 2667788888887765 34777888888888888888888888664
Q ss_pred ccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 010202 270 PCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLI 349 (515)
Q Consensus 270 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 349 (515)
-|...|..++.++.+.|++++|+++|....+.. ++....+.++.+|++.+++++...+. + .++...+..+.
T Consensus 1132 dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iG 1202 (1630)
T 1xi4_A 1132 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVG 1202 (1630)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHH
Confidence 367778888888888888888888888777653 33333445888888888887544332 1 44556666788
Q ss_pred HHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCC
Q 010202 350 YTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGK 429 (515)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~ 429 (515)
..|...|++++|...|. . ...|..+..+|.+.|++++|.+.+++. .+..+|..+..+|...|+
T Consensus 1203 d~le~eg~YeeA~~~Y~-k---------A~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve~~E 1265 (1630)
T 1xi4_A 1203 DRCYDEKMYDAAKLLYN-N---------VSNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKE 1265 (1630)
T ss_pred HHHHhcCCHHHHHHHHH-h---------hhHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhhhhH
Confidence 88888889999988888 3 247888888888888898888888875 334678888888888888
Q ss_pred hHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHh--cCCHHHHH
Q 010202 430 TDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRY-QTCRLILDEVKQ--KHMYDAAE 506 (515)
Q Consensus 430 ~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~--~g~~~~a~ 506 (515)
+..|. ..... +..++..+..++..|.+.|.+++|+.+++..+. +.|.. ..|.-+...+.+ -++..++.
T Consensus 1266 f~LA~-~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaKy~peklmEhl 1336 (1630)
T 1xi4_A 1266 FRLAQ-MCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHL 1336 (1630)
T ss_pred HHHHH-HHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHhCCHHHHHHHH
Confidence 88876 44332 223566677888889999999999999987763 33332 234333333332 34444444
Q ss_pred HHH
Q 010202 507 KIE 509 (515)
Q Consensus 507 ~~~ 509 (515)
++|
T Consensus 1337 k~f 1339 (1630)
T 1xi4_A 1337 ELF 1339 (1630)
T ss_pred HHH
Confidence 444
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-15 Score=138.17 Aligned_cols=276 Identities=10% Similarity=0.058 Sum_probs=215.0
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcCCCCC-hhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCCh
Q 010202 210 LDTLCKEGKVELARSVFLELKSCIPPN-AHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNF 288 (515)
Q Consensus 210 l~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 288 (515)
++-....|++..|+...+.+....|.+ ......+.++|...|++++|...++.. -+|+..++..+...+...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcH
Confidence 344567899999999988765432222 245567789999999999999877552 357888899999999999999
Q ss_pred hHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 010202 289 SKVYELLDEMQAQGCPP-NVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQV 367 (515)
Q Consensus 289 ~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 367 (515)
++|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..|.+.|++++|...|+
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~- 154 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK- 154 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH-
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH-
Confidence 99999999998876545 466677777899999999999999987 5678899999999999999999999999
Q ss_pred hchhCCCCCCHHHH---HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHc
Q 010202 368 EMPENGVAPDTSTF---NTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNK 444 (515)
Q Consensus 368 ~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 444 (515)
.+.+.. |+.... ...+..+...|++++|+.+|+++.+.. +.+...++.+..++.+.|++++|. ..+++..+.
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~eA~-~~l~~al~~ 229 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--SPTLLLLNGQAACHMAQGRWEAAE-GVLQEALDK 229 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHH
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHh
Confidence 666543 553211 223344455699999999999999864 677888999999999999999999 999998874
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010202 445 HHLSLDITTYTLVIHGLCRANKCEW-AYLLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKI 508 (515)
Q Consensus 445 ~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 508 (515)
. +-+..++..++..+...|+.++ +.++++++.+ +.|+.... .....+.+.++++..-
T Consensus 230 ~--p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~~---~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 230 D--SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPFI---KEYRAKENDFDRLVLQ 287 (291)
T ss_dssp C--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHH---HHHHHHHHHHHHHHHH
T ss_pred C--CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChHH---HHHHHHHHHHHHHHHH
Confidence 3 2367789999999999999976 5789999886 56765443 3334566666666543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-13 Score=144.53 Aligned_cols=353 Identities=11% Similarity=0.102 Sum_probs=270.0
Q ss_pred CCHHHHHHHHHHhhhCHHHHHHHHHHhcc-CCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCC---CCHHHHHH
Q 010202 98 PSHYLVNKLIHRFKDDWKSALGIFRWAGS-CPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHI---VTLNTIAK 173 (515)
Q Consensus 98 p~~~~~~~ll~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~ 173 (515)
-|...|..+|... ...-.++.+|... ...-..++.--...+..|...|.+.+|.++++++.-.+. .+.+.-+.
T Consensus 951 ~d~~lW~~vl~~~---n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~Lqnl 1027 (1630)
T 1xi4_A 951 KDPELWGSVLLES---NPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNL 1027 (1630)
T ss_pred cCHHHHHHHhcCC---cHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHH
Confidence 4677777777432 1223345555321 111144666778889999999999999999999984433 34455555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCCh
Q 010202 174 VMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRV 253 (515)
Q Consensus 174 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 253 (515)
++.+..+. +..+..+...++... + ...+...+...|.+++|..+|++.. ......+.++. ..+++
T Consensus 1028 Li~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyEEAf~IYkKa~----~~~~A~~VLie---~i~nl 1092 (1630)
T 1xi4_A 1028 LILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNELFEEAFAIFRKFD----VNTSAVQVLIE---HIGNL 1092 (1630)
T ss_pred HHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcC----CHHHHHHHHHH---HHhhH
Confidence 66666666 556666666665422 1 3447788899999999999999963 22233334433 77899
Q ss_pred hHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010202 254 DEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKM 333 (515)
Q Consensus 254 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 333 (515)
++|.++.++.. +..+|..+..++...|++++|++.|.+. -|...|..++.+|.+.|++++|.+.+...
T Consensus 1093 drAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mA 1160 (1630)
T 1xi4_A 1093 DRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMA 1160 (1630)
T ss_pred HHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998663 5778999999999999999999999664 37788999999999999999999999988
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCC
Q 010202 334 KIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPN 413 (515)
Q Consensus 334 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~ 413 (515)
++.. +++...+.++.+|++.+++++.....+ .++...|..+...|...|++++|..+|...
T Consensus 1161 rk~~--~e~~Idt~LafaYAKl~rleele~fI~--------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------- 1221 (1630)
T 1xi4_A 1161 RKKA--RESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------- 1221 (1630)
T ss_pred Hhhc--ccccccHHHHHHHHhhcCHHHHHHHHh--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------
Confidence 8764 444444569999999999996444432 357778888999999999999999999985
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010202 414 VQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLIL 493 (515)
Q Consensus 414 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 493 (515)
..|..+...+.+.|++++|+ +.+++. .+..+|..+..+|...|++..|...... +..++..+..++
T Consensus 1222 -~ny~rLA~tLvkLge~q~AI-EaarKA-------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli 1287 (1630)
T 1xi4_A 1222 -SNFGRLASTLVHLGEYQAAV-DGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELI 1287 (1630)
T ss_pred -hHHHHHHHHHHHhCCHHHHH-HHHHHh-------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHH
Confidence 37999999999999999999 887765 3568999999999999999999887654 344566677899
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 010202 494 DEVKQKHMYDAAEKIEAVMK 513 (515)
Q Consensus 494 ~~~~~~g~~~~a~~~~~~m~ 513 (515)
..|.+.|.+++|+++++.-.
T Consensus 1288 ~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1288 NYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred HHHHHcCCHHHHHHHHHHHh
Confidence 99999999999999998764
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=8e-18 Score=170.35 Aligned_cols=138 Identities=9% Similarity=0.076 Sum_probs=112.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhch---hCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHH
Q 010202 339 KPDSRFFNCLIYTLGRASRVQEAVYVYQVEMP---ENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQ 415 (515)
Q Consensus 339 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~ 415 (515)
..-..+|++||++||+.|++++|..+|. .|. ..|+.||..|||+||.+|++.|++++|.++|++|.+.| +.||.+
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~-eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G-~~PDvv 201 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLV-VHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG-LTPDLL 201 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHH-HHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CCCCHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHH-HHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCcHH
Confidence 3445689999999999999999999997 654 45788999999999999999999999999999999998 999999
Q ss_pred hHHHHHHHHHhcCCh-HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 010202 416 TFHPLLKSCFKTGKT-DECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPR 485 (515)
Q Consensus 416 ~~~~ll~~~~~~g~~-~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 485 (515)
||+++|.++++.|+. ++|. ++|++|.+ .|+.||..+|++++.+..+. ..++.++++ ..++.|+
T Consensus 202 TYntLI~glcK~G~~~e~A~-~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~ 265 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIE-RCLEQMSQ-EGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLP 265 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHH-HHHHHHHH-HTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCC
T ss_pred HHHHHHHHHHhCCCcHHHHH-HHHHHHHH-cCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCC
Confidence 999999999999885 6777 89999988 79999999999888766664 344444444 3345554
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.4e-14 Score=139.61 Aligned_cols=361 Identities=14% Similarity=0.026 Sum_probs=235.8
Q ss_pred HhhhCHHHHHHHHHHhccC-------CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhc--------CCCCCHHHHHH
Q 010202 109 RFKDDWKSALGIFRWAGSC-------PGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSK--------GHIVTLNTIAK 173 (515)
Q Consensus 109 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~ 173 (515)
...|+.++|++.|..+... ...+....+|+.+..+|...|++++|...+++... .++....++..
T Consensus 62 ~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~ 141 (472)
T 4g1t_A 62 HLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCE 141 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHH
Confidence 3346888888888776321 12233567899999999999999999999988754 12345566665
Q ss_pred HHHHHHh--cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHH
Q 010202 174 VMRRFSG--AGQWEDAVRTFDELGTFGLEKNTETMNLLLDT---LCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWC 248 (515)
Q Consensus 174 li~~~~~--~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 248 (515)
...++.. .+++++|++.|++..+.. +-++..+..+..+ +...++.++|++.+++.....|.+..++..+...+.
T Consensus 142 ~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~ 220 (472)
T 4g1t_A 142 EGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLH 220 (472)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHH
Confidence 5555554 457999999999998753 3356666555554 345677788888888855545667777777766555
Q ss_pred c----cCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----
Q 010202 249 K----INRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKS---- 320 (515)
Q Consensus 249 ~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~---- 320 (515)
. .|++++|.+.+++..... +.+..++..+...|...|++++|++.+++..+.. +-+..++..+...|...
T Consensus 221 ~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~ 298 (472)
T 4g1t_A 221 KMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQV 298 (472)
T ss_dssp HCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHh
Confidence 4 467889999999987764 4467789999999999999999999999998763 23566666666555322
Q ss_pred ---------------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCH--HHHHH
Q 010202 321 ---------------GDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDT--STFNT 383 (515)
Q Consensus 321 ---------------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~ 383 (515)
+..+.|...+++..+.. +.+..++..+...|...|++++|...|+ ........+.. ..+..
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~-kaL~~~~~~~~~~~~~~~ 376 (472)
T 4g1t_A 299 MNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQ-KEFSKELTPVAKQLLHLR 376 (472)
T ss_dssp HHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHH-HHHHSCCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHH-HHHhcCCCChHHHHHHHH
Confidence 23567788888877754 4556678889999999999999999999 55544322221 12233
Q ss_pred HHH-HHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 010202 384 MIT-MFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLC 462 (515)
Q Consensus 384 li~-~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~ 462 (515)
+.. ...+.|++++|+..|.+..+ +.|+.......+ +.+. .+++...+.. +.+..+|..+...|.
T Consensus 377 ~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~-~~~~~~l~~~--p~~~~~~~~LG~~~~ 441 (472)
T 4g1t_A 377 YGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQ-KIAKMRLSKN--GADSEALHVLAFLQE 441 (472)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHH-HHHHHHHHHC--C-CTTHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHH-HHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 322 34578999999999999998 456643322222 2223 5555555532 235678999999999
Q ss_pred hcCCHHHHHHHHHHHHhCC-CCCCHHHH
Q 010202 463 RANKCEWAYLLFKEMIGHD-ITPRYQTC 489 (515)
Q Consensus 463 ~~g~~~~A~~~~~~m~~~~-~~p~~~~~ 489 (515)
..|++++|++.|++.++.+ ..|+..+|
T Consensus 442 ~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 442 LNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHCC----------------------
T ss_pred HcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 9999999999999998754 34555544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.69 E-value=3e-15 Score=131.20 Aligned_cols=198 Identities=15% Similarity=0.049 Sum_probs=114.0
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 010202 131 EHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLL 210 (515)
Q Consensus 131 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 210 (515)
++++..+..+...+.+.|++++|...|++..+.++.+..++..+...+.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45666777778888888888888888888888888888888888888888888888888888877653 33566777777
Q ss_pred HHHHHc-----------CCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHH
Q 010202 211 DTLCKE-----------GKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTII 279 (515)
Q Consensus 211 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 279 (515)
.++... |++++|+..+++.....|.+...+..+...+...|++++|...|++..+.. .+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 777666 555555555555433334445555555555555555555555555554443 3444455555
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010202 280 QSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEK 332 (515)
Q Consensus 280 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 332 (515)
.+|...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55555555555555555544432 12344444444455555555555554444
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.8e-14 Score=128.44 Aligned_cols=220 Identities=13% Similarity=0.093 Sum_probs=98.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---CCCC----hhhHHHHH
Q 010202 172 AKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSC---IPPN----AHTFNIFI 244 (515)
Q Consensus 172 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~li 244 (515)
..+...+...|++++|++.|++..+.. .+...+..+..++...|++++|...+++.... ..++ ..++..+.
T Consensus 9 ~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 86 (258)
T 3uq3_A 9 KAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIG 86 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHH
Confidence 333444444555555555554444433 34444444444555555555555554442211 1111 34444455
Q ss_pred HHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 010202 245 HGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFE 324 (515)
Q Consensus 245 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 324 (515)
..+.+.|++++|...|++..... |+. ..+...|++++|++.++++.... +.+...+..+...+...|+++
T Consensus 87 ~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 87 NAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHH
Confidence 55555555555555555544431 221 12333444555555555544431 112334444444455555555
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 010202 325 EAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEM 404 (515)
Q Consensus 325 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 404 (515)
+|.+.++++.+.. +.+..++..+...|.+.|++++|...|+ ...+.. +.+...|..+...+...|++++|.+.+++.
T Consensus 157 ~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~-~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 157 NAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCN-KAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5555555554432 2334444445555555555555555554 222211 123444444555555555555555555554
Q ss_pred Hh
Q 010202 405 NK 406 (515)
Q Consensus 405 ~~ 406 (515)
.+
T Consensus 234 ~~ 235 (258)
T 3uq3_A 234 RT 235 (258)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.2e-14 Score=127.31 Aligned_cols=224 Identities=10% Similarity=0.028 Sum_probs=139.0
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCC----HHHHH
Q 010202 238 HTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGC--PPN----VVTYT 311 (515)
Q Consensus 238 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~----~~~~~ 311 (515)
..+..+...+...|++++|...|++..+.. .+...|..+...+...|++++|++.+++..+... .++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345555555566666666666666655544 4555566666666666666666666665554211 111 35556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhC
Q 010202 312 TVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHH 391 (515)
Q Consensus 312 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 391 (515)
.+...+...|++++|.+.++++.+. .|+. ..+.+.|++++|...++ ...... +.+...+..+...+...
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAE-AEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHH-HHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHH-HHHHcC-cchHHHHHHHHHHHHHh
Confidence 6666666666666666666666654 2332 23445566777777776 444321 12345666677777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010202 392 GHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAY 471 (515)
Q Consensus 392 g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 471 (515)
|++++|++.|+++.+.. +.+...+..+...+...|++++|+ ..+++..+.. +.+...|..+...+.+.|++++|.
T Consensus 153 ~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAI-ADCNKAIEKD--PNFVRAYIRKATAQIAVKEYASAL 227 (258)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHhC--HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 77777777777777754 345667777777777778888877 7777776632 224666777777788888888888
Q ss_pred HHHHHHHh
Q 010202 472 LLFKEMIG 479 (515)
Q Consensus 472 ~~~~~m~~ 479 (515)
+.+++..+
T Consensus 228 ~~~~~a~~ 235 (258)
T 3uq3_A 228 ETLDAART 235 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87777764
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.1e-14 Score=125.80 Aligned_cols=195 Identities=13% Similarity=0.051 Sum_probs=108.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 010202 167 TLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHG 246 (515)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 246 (515)
+..++..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..+++.....|.+...+..+...
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA 82 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 33445555666666777777777776666543 33566666666666666777777776666544445566666666666
Q ss_pred HHcc-----------CChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010202 247 WCKI-----------NRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMS 315 (515)
Q Consensus 247 ~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 315 (515)
+.+. |++++|...|++..+.. +-+...|..+...+...|++++|++.|++..+.. .+...+..+..
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 6666 66666666666655542 2234555555556666666666666666655544 35555555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010202 316 YLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQ 366 (515)
Q Consensus 316 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 366 (515)
++...|++++|...+++..+.. +.+...+..+...+.+.|++++|...|+
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 6666666666666666655543 3344555555555555566665555554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-13 Score=125.20 Aligned_cols=247 Identities=9% Similarity=-0.004 Sum_probs=182.9
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHH
Q 010202 237 AHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPN--VVTYTTVM 314 (515)
Q Consensus 237 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li 314 (515)
...+......+...|++++|...|++..+.. +.+...|..+...+...|++++|++.+++..+.+..++ ..+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3445566777888888888888888887764 23455778888888888888888888888877432222 34477888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCH
Q 010202 315 SYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHH 394 (515)
Q Consensus 315 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 394 (515)
..+...|++++|.+.+++..+.. +.+..++..+...|...|++++|...|+ ...+. .+.+...|..+...+...+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~-~al~~-~~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYME-KQIRP-TTTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHG-GGCCS-SCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHH-HHhhc-CCCcHHHHHHHHHHHHHHHHH
Confidence 88888999999999998888764 4566788889999999999999999998 55444 233566777777334445699
Q ss_pred HHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCC---hHHHHHHHHHHHHHcCCCCCC------HHHHHHHHHHHHhcC
Q 010202 395 EKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGK---TDECLSQLLDDMVNKHHLSLD------ITTYTLVIHGLCRAN 465 (515)
Q Consensus 395 ~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g 465 (515)
++|++.|+++.+.. +.+...+..+...+...|+ +++|. ..+++..+...-.|+ ...|..+...|...|
T Consensus 159 ~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (272)
T 3u4t_A 159 VKADSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAK-PYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINR 235 (272)
T ss_dssp HHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTH-HHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHH-HHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcC
Confidence 99999999998854 3446777778888888888 77888 788887764333344 257788899999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCH-HHHHHH
Q 010202 466 KCEWAYLLFKEMIGHDITPRY-QTCRLI 492 (515)
Q Consensus 466 ~~~~A~~~~~~m~~~~~~p~~-~~~~~l 492 (515)
++++|.+.+++..+ +.|+. ..+..+
T Consensus 236 ~~~~A~~~~~~al~--~~p~~~~a~~~l 261 (272)
T 3u4t_A 236 DKVKADAAWKNILA--LDPTNKKAIDGL 261 (272)
T ss_dssp CHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHh--cCccHHHHHHHh
Confidence 99999999999987 44554 344433
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-13 Score=123.68 Aligned_cols=201 Identities=11% Similarity=0.016 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 010202 134 SEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTL 213 (515)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 213 (515)
+..+..+...|...|++++|.+.|+++...++....++..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 56778888888899999999999998888777778888888888889999999999998887753 34677788888888
Q ss_pred HHcCCHHHHHHHHHHhhc--CCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHH
Q 010202 214 CKEGKVELARSVFLELKS--CIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKV 291 (515)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 291 (515)
...|++++|.+.++++.. ..+.+...+..+...+.+.|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888554 344566778888888888888888888888877653 33567778888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010202 292 YELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVG 337 (515)
Q Consensus 292 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 337 (515)
.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+..
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 88888877653 3456677777778888888888888888887653
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-13 Score=121.04 Aligned_cols=201 Identities=9% Similarity=-0.044 Sum_probs=121.8
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 010202 133 SSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDT 212 (515)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 212 (515)
++.++..+...+...|++++|.+.|+++.+.++.+..++..+...+...|++++|.+.|+++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 455666667777777777777777777766666666666666667777777777777777666542 3355566666666
Q ss_pred HHHc-CCHHHHHHHHHHhhc--CCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChh
Q 010202 213 LCKE-GKVELARSVFLELKS--CIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFS 289 (515)
Q Consensus 213 ~~~~-~~~~~a~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 289 (515)
+... |++++|...++++.. ..+.+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 6666 666666666666443 223334556666666666666666666666655542 223555566666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010202 290 KVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKI 335 (515)
Q Consensus 290 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 335 (515)
+|.+.++++.+.....+...+..+...+...|+.+.+..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6666666655542213444555555555566666666666665554
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.8e-14 Score=127.28 Aligned_cols=213 Identities=8% Similarity=-0.006 Sum_probs=156.8
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 010202 131 EHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLL 210 (515)
Q Consensus 131 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 210 (515)
...+..+..+...+.+.|++++|...|+++...++.+..++..+...+...|++++|++.|+++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ----------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 34566788888889999999999999999988888888888888999999999999999999988764 44778888888
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhH
Q 010202 211 DTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSK 290 (515)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 290 (515)
..+...|++++|.+.++++....+.+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 899999999999999988665567778888889999999999999999999887653 3467788888888889999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 010202 291 VYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNC 347 (515)
Q Consensus 291 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 347 (515)
|++.++++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+..
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~ 232 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLALHA 232 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHHHHH
Confidence 999998887753 3357788888888888899999998888888764 334444443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.7e-14 Score=129.13 Aligned_cols=243 Identities=9% Similarity=-0.079 Sum_probs=135.4
Q ss_pred cCCHHHHHHHHHHHhhCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHH
Q 010202 181 AGQWEDAVRTFDELGTFGLE---KNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQ 257 (515)
Q Consensus 181 ~g~~~~A~~~~~~m~~~g~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 257 (515)
.|++++|++.|+++.+.... .+..++..+...+...|++++|...|++.....+.+..++..+...|...|++++|.
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 45566666666666554211 134455556666666666666666666644444555666666666666666666666
Q ss_pred HHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010202 258 WTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVG 337 (515)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 337 (515)
..|++..+.. +.+..+|..+...|...|++++|++.++++.+. .|+.......+..+...|++++|...+++.....
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 6666666542 224556666666666667777777766666654 2333333333344455566777777766655542
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCH
Q 010202 338 SKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVA---PDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNV 414 (515)
Q Consensus 338 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~ 414 (515)
+++...+ .++..+...++.++|...+. ........ .+...|..+...|...|++++|...|++..+. .|+.
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~ 248 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLK-ADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN---NVHN 248 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHH-HHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCTT
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHH-HHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---Cchh
Confidence 2232222 24555556666666666666 33221110 01355666677777777777777777777663 3422
Q ss_pred HhHHHHHHHHHhcCChHHHH
Q 010202 415 QTFHPLLKSCFKTGKTDECL 434 (515)
Q Consensus 415 ~~~~~ll~~~~~~g~~~~A~ 434 (515)
+.....++...|++++|+
T Consensus 249 --~~~~~~~~~~l~~~~~a~ 266 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQ 266 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC-
T ss_pred --HHHHHHHHHHHHHHHhhH
Confidence 112233455566666665
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-13 Score=125.13 Aligned_cols=199 Identities=10% Similarity=-0.001 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--CHHHHHHHHHH
Q 010202 135 EIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEK--NTETMNLLLDT 212 (515)
Q Consensus 135 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~ll~~ 212 (515)
..+......+.+.|++++|...|+++.+.++.+..++..+...|...|++++|++.|++..+.+..+ ....|..+...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3445556667777777777777777777666665566666677777777777777777776632111 12336666677
Q ss_pred HHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHH
Q 010202 213 LCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVY 292 (515)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 292 (515)
+...|++++|...|++.....+.+..++..+...|...|++++|...|++..+.. +.+...|..+...+...+++++|+
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776544445556666667777777777777777776666542 234455555552333344666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHh
Q 010202 293 ELLDEMQAQGCPPNVVTYTTVMSYLAKSGD---FEEAIRITEKMKI 335 (515)
Q Consensus 293 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~ 335 (515)
+.|++..+.. +.+...+..+...+...|+ +++|...++++.+
T Consensus 163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 6666666542 2234555555555555555 5555555555443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-14 Score=132.44 Aligned_cols=246 Identities=11% Similarity=-0.031 Sum_probs=162.7
Q ss_pred cCCChHHHHHHHHHHhcCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 010202 146 KVRQMDQMRALLEEMSKGHI----VTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVEL 221 (515)
Q Consensus 146 ~~g~~~~A~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 221 (515)
..|++++|.+.|+++.+..+ ....++..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 45677777777777766432 245566667777777888888888887777653 3467777777778888888888
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 010202 222 ARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQ 301 (515)
Q Consensus 222 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 301 (515)
|...|++.....+.+..++..+...|.+.|++++|...|+++.+.. |+.......+..+...|++++|+..+++....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888877555556667778888888888888888888888877653 44444444555556678888888888776654
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCH
Q 010202 302 GCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSK---PDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDT 378 (515)
Q Consensus 302 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 378 (515)
. +++...+ .++..+...++.++|.+.+....+.... .+..++..+...|.+.|++++|...|+ ..... .|+.
T Consensus 174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~-~al~~--~p~~ 248 (275)
T 1xnf_A 174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFK-LAVAN--NVHN 248 (275)
T ss_dssp S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHTT--CCTT
T ss_pred C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHH-HHHhC--Cchh
Confidence 2 2233333 3566666777778888887777653211 114667778888888888888888888 55443 2322
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHH
Q 010202 379 STFNTMITMFSHHGHHEKAFHVL 401 (515)
Q Consensus 379 ~~~~~li~~~~~~g~~~~A~~~~ 401 (515)
+.....++...|++++|++.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 223344566677777777665
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=3e-12 Score=116.49 Aligned_cols=222 Identities=12% Similarity=0.040 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhhcCCCCChhhHHHHH
Q 010202 169 NTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCK----EGKVELARSVFLELKSCIPPNAHTFNIFI 244 (515)
Q Consensus 169 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li 244 (515)
.++..+...+...|++++|++.|++..+ +.+...+..+...|.. .+++++|...|++.... .+...+..+.
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg 81 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLLG 81 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC--CCHHHHHHHH
Confidence 3333444444444555555555544444 1233344444444444 55555555555442211 1444445555
Q ss_pred HHHHc----cCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010202 245 HGWCK----INRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCR----QYNFSKVYELLDEMQAQGCPPNVVTYTTVMSY 316 (515)
Q Consensus 245 ~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 316 (515)
..|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +..++..+...
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 55555 555555555555555543 44455555555555 555566666655555543 34445555555
Q ss_pred HHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHH
Q 010202 317 LAK----SGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGR----ASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMF 388 (515)
Q Consensus 317 ~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 388 (515)
|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|+ ...+.+ +...+..+...|
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~-~a~~~~---~~~a~~~l~~~~ 228 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYS-KACELE---NGGGCFNLGAMQ 228 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHH-HHHHTT---CHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHH-HHHhCC---CHHHHHHHHHHH
Confidence 555 556666666666555542 34445555555555 566666666665 333321 244555555566
Q ss_pred Hh----CCCHHHHHHHHHHHHhCC
Q 010202 389 SH----HGHHEKAFHVLEEMNKLE 408 (515)
Q Consensus 389 ~~----~g~~~~A~~~~~~m~~~~ 408 (515)
.+ .+++++|++.|++..+.+
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HcCCCcccCHHHHHHHHHHHHHcC
Confidence 65 666666666666666644
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.9e-13 Score=118.14 Aligned_cols=198 Identities=12% Similarity=0.045 Sum_probs=82.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhc
Q 010202 206 MNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQ 285 (515)
Q Consensus 206 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 285 (515)
+..+...+...|++++|.+.+++.....+.+...+..+...+...|++++|...+++..+.. +.+..++..+...+...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 89 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGR 89 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHh
Confidence 33344444444444444444444322223334444444444444444444444444443321 12333444444444444
Q ss_pred -CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010202 286 -YNFSKVYELLDEMQAQGCPPN-VVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVY 363 (515)
Q Consensus 286 -g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 363 (515)
|++++|++.++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...|.+.|++++|..
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 168 (225)
T 2vq2_A 90 LNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADY 168 (225)
T ss_dssp TCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHH
Confidence 444444444444443111111 3334444444444444444444444444432 2234444444444444444444444
Q ss_pred HHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010202 364 VYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNK 406 (515)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 406 (515)
.++ .........+...+..+...+...|+.++|..+++.+.+
T Consensus 169 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 169 YFK-KYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHH-HHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHH-HHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 444 222211102333444444444445555555555544443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.60 E-value=7.7e-13 Score=118.73 Aligned_cols=208 Identities=13% Similarity=0.017 Sum_probs=133.6
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 010202 272 VISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYT 351 (515)
Q Consensus 272 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 351 (515)
...|..+...+...|++++|++.++++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 3455556666666666666666666665542 2245566666666666677777777766666553 3456666666777
Q ss_pred HHhcCCHHHHHHHHHhhchhCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCCh
Q 010202 352 LGRASRVQEAVYVYQVEMPENGVAP-DTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKT 430 (515)
Q Consensus 352 ~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~ 430 (515)
|...|++++|...++ .....+..| +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++
T Consensus 115 ~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLL-EASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHTTCHHHHHHHHH-HHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhHHHHHHHHHH-HHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCH
Confidence 777777777777776 443322233 34566667777777777777777777777643 33466677777777777777
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010202 431 DECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTC 489 (515)
Q Consensus 431 ~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 489 (515)
++|. ..++++.+. .+.+...+..+...+...|++++|.+.++++.+ ..|+...+
T Consensus 192 ~~A~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~ 245 (252)
T 2ho1_A 192 VPAR-QYYDLFAQG--GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR--LYPGSLEY 245 (252)
T ss_dssp HHHH-HHHHHHHTT--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTSHHH
T ss_pred HHHH-HHHHHHHHh--CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCCHHH
Confidence 7777 777777652 123456667777777777888888777777765 34544433
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.60 E-value=3.5e-13 Score=127.90 Aligned_cols=231 Identities=7% Similarity=-0.001 Sum_probs=173.5
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 010202 133 SSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQ-WEDAVRTFDELGTFGLEKNTETMNLLLD 211 (515)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 211 (515)
+..+|..+...+.+.|++++|+..|+++...++.+..++..+...+...|+ +++|+..|++..+.. +-+...|..+..
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 356677788888889999999999999998888888888888888888996 999999999888754 346778888888
Q ss_pred HHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHh-cCChhH
Q 010202 212 TLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCR-QYNFSK 290 (515)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~ 290 (515)
++...|++++|+..|+++....+.+..+|..+..++.+.|++++|+..|+++.+.. +-+...|+.+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 88888888888888888666667788888888888888888888888888888764 3367788888888888 555577
Q ss_pred H-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-------
Q 010202 291 V-----YELLDEMQAQGCPPNVVTYTTVMSYLAKSG--DFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRAS------- 356 (515)
Q Consensus 291 A-----~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g------- 356 (515)
| ++.+++..... +-+...|..+...+...| ++++|.+.+.++ +. .+.+...+..+...|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccch
Confidence 7 46677766643 224566777776676666 567777777666 32 2445566666666666653
Q ss_pred --CHHHHHHHHHhhc
Q 010202 357 --RVQEAVYVYQVEM 369 (515)
Q Consensus 357 --~~~~A~~~~~~~~ 369 (515)
..++|..+|+ .+
T Consensus 331 ~~~~~~A~~~~~-~l 344 (382)
T 2h6f_A 331 EDILNKALELCE-IL 344 (382)
T ss_dssp HHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHH-HH
Confidence 2466666666 44
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=3.5e-12 Score=115.97 Aligned_cols=223 Identities=9% Similarity=-0.042 Sum_probs=123.9
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHH
Q 010202 236 NAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCR----QYNFSKVYELLDEMQAQGCPPNVVTYT 311 (515)
Q Consensus 236 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~ 311 (515)
+..++..+...|...|++++|...|++..+.+ +..++..+...|.. .+++++|++.|++..+.+ +..++.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 34445555555555555555555555555522 34445555555555 555555555555555543 445555
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhhchhCCCCCCHHHHHH
Q 010202 312 TVMSYLAK----SGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGR----ASRVQEAVYVYQVEMPENGVAPDTSTFNT 383 (515)
Q Consensus 312 ~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 383 (515)
.+...|.. .+++++|.+.+++..+.+ +...+..+...|.. .+++++|...|+ ...+.+ +...+..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~-~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFT-KACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHH-HHHHTT---CHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHH-HHHhcC---cHHHHHH
Confidence 55555555 556666666665555543 44555555555555 566666666665 333322 3445555
Q ss_pred HHHHHHh----CCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHh----cCChHHHHHHHHHHHHHcCCCCCCHHHHH
Q 010202 384 MITMFSH----HGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFK----TGKTDECLSQLLDDMVNKHHLSLDITTYT 455 (515)
Q Consensus 384 li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~p~~~~~~ 455 (515)
+...|.. .+++++|++.|++..+.+ +...+..+...+.. .+++++|+ ..+++..+. + +...+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~-~~~~~a~~~-~---~~~a~~ 222 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK----DSPGCFNAGNMYHHGEGATKNFKEAL-ARYSKACEL-E---NGGGCF 222 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTCSSCCCHHHHH-HHHHHHHHT-T---CHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCccHHHHH-HHHHHHHhC-C---CHHHHH
Confidence 5555555 566666666666665543 23445555555666 66666666 666666552 1 244555
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhC
Q 010202 456 LVIHGLCR----ANKCEWAYLLFKEMIGH 480 (515)
Q Consensus 456 ~li~~~~~----~g~~~~A~~~~~~m~~~ 480 (515)
.+...|.+ .|++++|.+.+++..+.
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 56666666 66666666666666653
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=5.2e-13 Score=126.71 Aligned_cols=234 Identities=9% Similarity=0.012 Sum_probs=187.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHhhcCCCCChhhHHHHHH
Q 010202 167 TLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGK-VELARSVFLELKSCIPPNAHTFNIFIH 245 (515)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~li~ 245 (515)
...++..+...+.+.|++++|++.|++..+.. +-+...|+.+..++...|+ +++|+..|++.....|.+..+|+.+..
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~ 174 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 45566677888889999999999999998853 4467888999999999996 999999999976667788999999999
Q ss_pred HHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHH
Q 010202 246 GWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAK-SGDFE 324 (515)
Q Consensus 246 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~ 324 (515)
++.+.|++++|+..|+++.+.. +-+...|..+..++.+.|++++|++.++++.+... -+..+|+.+..++.+ .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999998865 44778899999999999999999999999988743 367888888888888 56546
Q ss_pred HH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCC-----
Q 010202 325 EA-----IRITEKMKIVGSKPDSRFFNCLIYTLGRAS--RVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHG----- 392 (515)
Q Consensus 325 ~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----- 392 (515)
+| ++.+++.++.. +.+...|..+...+.+.| ++++|...+. .+ + ....+...+..+...|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~-~~-~-~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLL-DL-Q-PSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHH-HH-T-TTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHH-Hh-c-cCCCCHHHHHHHHHHHHHHhccccc
Confidence 66 47788877764 456778888888888777 5788888887 55 2 22345677778888887764
Q ss_pred ----CHHHHHHHHHHH-HhC
Q 010202 393 ----HHEKAFHVLEEM-NKL 407 (515)
Q Consensus 393 ----~~~~A~~~~~~m-~~~ 407 (515)
..++|+++|+++ .+.
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEK 348 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHHh
Confidence 247888888888 663
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.9e-13 Score=120.65 Aligned_cols=196 Identities=13% Similarity=0.110 Sum_probs=86.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhc
Q 010202 206 MNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQ 285 (515)
Q Consensus 206 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 285 (515)
+..+...+...|++++|...|+++....+.+...+..+...+.+.|++++|...+++..+.. +.+...+..+...+...
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 104 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVK 104 (243)
T ss_dssp ----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHh
Confidence 33344444444444444444444333333444444444445555555555555554444332 22344444445555555
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010202 286 YNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVY 365 (515)
Q Consensus 286 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 365 (515)
|++++|++.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...|.+.|++++|...|
T Consensus 105 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 105 EMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp TCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555555544432 2234444445555555555555555555554432 233444555555555555555555555
Q ss_pred HhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010202 366 QVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNK 406 (515)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 406 (515)
+ ...... +.+...+..+...|...|++++|.+.++++.+
T Consensus 183 ~-~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 183 A-AVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp H-HHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred H-HHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 5 322221 12344555555555555555555555555555
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.55 E-value=7.4e-13 Score=129.55 Aligned_cols=370 Identities=11% Similarity=0.029 Sum_probs=234.3
Q ss_pred hhCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCCh---HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-----
Q 010202 111 KDDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQM---DQMRALLEEMSKGHIVTLNTIAKVMRRFSGAG----- 182 (515)
Q Consensus 111 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g----- 182 (515)
.++++.|...|..+.. .| ++..+..|..+|...|+. ++|...|+...+. +..++..+...+...+
T Consensus 16 ~g~~~~A~~~~~~aa~-~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 16 RGDTVTAQQNYQQLAE-LG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHH-HT---CCTGGGTCC-------------------------------CHHHHHHHHHTC--CCHH
T ss_pred CCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCc
Confidence 3688999999999853 33 445667788888888888 8999999988765 4555555566555555
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-CCCChhhHHHHHHHHHccCChhHHHHHHH
Q 010202 183 QWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSC-IPPNAHTFNIFIHGWCKINRVDEAQWTIQ 261 (515)
Q Consensus 183 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 261 (515)
++++|+++|++..+.|. ++ .+..|...|...+..+.+.+.++.+... ...+...+..|...|...+.++++.....
T Consensus 89 ~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp HHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred CHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHH
Confidence 78899999999998763 33 6667777787766544433333332211 12346677888888888886666555533
Q ss_pred HHHhCCCCccHhHHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHH
Q 010202 262 EMKGHGCHPCVISYSTIIQSYCRQY---NFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKS----GDFEEAIRITEKMK 334 (515)
Q Consensus 262 ~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~~~ 334 (515)
.+.+.-...+...+..|...|...| +.++|++.|++..+.| .++...+..+...|... +++++|.+.|++..
T Consensus 166 ~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 166 RICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 3332211224448888999999999 8999999999999887 34666556677777554 69999999999987
Q ss_pred hcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHh
Q 010202 335 IVGSKPDSRFFNCLIYT-L--GRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHG-----HHEKAFHVLEEMNK 406 (515)
Q Consensus 335 ~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~ 406 (515)
. -+...+..|... | ...+++++|...|+ ...+.| +...+..+...|. .| ++++|+++|++..
T Consensus 245 -~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~-~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa- 314 (452)
T 3e4b_A 245 -P---GYPASWVSLAQLLYDFPELGDVEQMMKYLD-NGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV- 314 (452)
T ss_dssp -G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHH-HHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-
T ss_pred -C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-
Confidence 3 445566666666 4 46899999999999 666654 6777888888887 45 9999999999987
Q ss_pred CCCCCCCHHhHHHHHHHHHh----cCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 010202 407 LEHCKPNVQTFHPLLKSCFK----TGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCR----ANKCEWAYLLFKEMI 478 (515)
Q Consensus 407 ~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~ 478 (515)
.| +......|...|.. ..+.++|+ ..+++..+ .| +......|...|.. ..+.++|..+++...
T Consensus 315 ~g----~~~A~~~Lg~~y~~G~g~~~d~~~A~-~~~~~Aa~-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 315 GR----EVAADYYLGQIYRRGYLGKVYPQKAL-DHLLTAAR-NG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp TT----CHHHHHHHHHHHHTTTTSSCCHHHHH-HHHHHHHT-TT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred CC----CHHHHHHHHHHHHCCCCCCcCHHHHH-HHHHHHHh-hC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 44 34556666666655 34899999 89988877 44 33345566666654 468999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010202 479 GHDITPRYQTCRLILDEVKQKHMYDAAEKIEAV 511 (515)
Q Consensus 479 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 511 (515)
+.|. ++.......+......++.++|.++.+.
T Consensus 386 ~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~ 417 (452)
T 3e4b_A 386 AQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQ 417 (452)
T ss_dssp TTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8763 3332222222222233455666666554
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.55 E-value=6.4e-13 Score=129.99 Aligned_cols=331 Identities=9% Similarity=0.034 Sum_probs=192.7
Q ss_pred HHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCC-----ChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH---H
Q 010202 115 KSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVR-----QMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWE---D 186 (515)
Q Consensus 115 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~---~ 186 (515)
.+|...|..+... ++..+..|..++...| ++++|...|++....+.+. ++..+...|...+..+ +
T Consensus 55 ~~A~~~~~~A~~~-----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~--A~~~Lg~~y~~~~~~~~~~~ 127 (452)
T 3e4b_A 55 KQAEATYRAAADT-----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGN--TLIPLAMLYLQYPHSFPNVN 127 (452)
T ss_dssp ---------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSS--CHHHHHHHHHHCGGGCTTCC
T ss_pred HHHHHHHHHHHhC-----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCCCCCCHH
Confidence 6777777776421 5556667776555544 6778888888877755544 4444566666655433 3
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHHHhhcCCCCChhhHHHHHHHHHccC---ChhHHHHH
Q 010202 187 AVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVE----LARSVFLELKSCIPPNAHTFNIFIHGWCKIN---RVDEAQWT 259 (515)
Q Consensus 187 A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~----~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~ 259 (515)
+.+.+......| +......+...|...+.++ .+..++.....+ ++..+..|...|.+.| +.++|...
T Consensus 128 a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~---~~~a~~~Lg~~~~~~g~~~~~~~A~~~ 201 (452)
T 3e4b_A 128 AQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNT---TDICYVELATVYQKKQQPEQQAELLKQ 201 (452)
T ss_dssp HHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTT---CTTHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCcccHHHHHHH
Confidence 455555554444 3445555666777766443 344444433332 3337777888888888 78888888
Q ss_pred HHHHHhCCCCccHhHHHHHHHHHHhc----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHH
Q 010202 260 IQEMKGHGCHPCVISYSTIIQSYCRQ----YNFSKVYELLDEMQAQGCPPNVVTYTTVMSY-L--AKSGDFEEAIRITEK 332 (515)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~ 332 (515)
|++..+.| .++...+..+...|... +++++|+++|++.. .| +...+..+... + ...+++++|.+.|++
T Consensus 202 ~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~ 276 (452)
T 3e4b_A 202 MEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDN 276 (452)
T ss_dssp HHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHH
T ss_pred HHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 88888776 34555556666666554 67888888888776 32 44555666555 3 357788888888888
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHH
Q 010202 333 MKIVGSKPDSRFFNCLIYTLGRAS-----RVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSH----HGHHEKAFHVLEE 403 (515)
Q Consensus 333 ~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~ 403 (515)
..+.| +...+..|...|. .| ++++|...|+ ... .-+...+..+...|.. ..++++|..+|++
T Consensus 277 Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~-~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 347 (452)
T 3e4b_A 277 GRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFE-KAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLT 347 (452)
T ss_dssp HHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH-TTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH-HHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 87765 5666667777666 44 8888888887 443 2356667777766665 3378888888888
Q ss_pred HHhCCCCCCCHHhHHHHHHHHHh----cCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010202 404 MNKLEHCKPNVQTFHPLLKSCFK----TGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIG 479 (515)
Q Consensus 404 m~~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 479 (515)
..+.| .|+ ....|...|.. ..+.++|. ..++...+ .|. ++.......+......++.++|.++.++..+
T Consensus 348 Aa~~g--~~~--A~~~Lg~~y~~G~g~~~d~~~A~-~~~~~A~~-~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 348 AARNG--QNS--ADFAIAQLFSQGKGTKPDPLNAY-VFSQLAKA-QDT-PEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHTTT--CTT--HHHHHHHHHHSCTTBCCCHHHHH-HHHHHHHT-TCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHhhC--hHH--HHHHHHHHHHhCCCCCCCHHHHH-HHHHHHHH-CCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 87766 333 33444444443 34677777 77777766 342 2222222222222233455666666666543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.2e-13 Score=131.94 Aligned_cols=278 Identities=13% Similarity=-0.006 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHhhcC------CCCCh
Q 010202 168 LNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNT----ETMNLLLDTLCKEGKVELARSVFLELKSC------IPPNA 237 (515)
Q Consensus 168 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~ 237 (515)
...+..+...+...|++++|+..|+++.+.+ +.+. ..+..+...|...|++++|...+++.... .+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 4445556677778888888888888877653 2233 35666777777777777777777763211 12234
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHhC----C-CCccHhHHHHHHHHHHhcCC-----------------hhHHHHHH
Q 010202 238 HTFNIFIHGWCKINRVDEAQWTIQEMKGH----G-CHPCVISYSTIIQSYCRQYN-----------------FSKVYELL 295 (515)
Q Consensus 238 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~ 295 (515)
.++..+...|...|++++|...+++..+. + .+....++..+...|...|+ +++|++.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 45566666666666666666666665432 0 01122345555555555555 44454444
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCC-
Q 010202 296 DEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGS-KPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENG- 373 (515)
Q Consensus 296 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~- 373 (515)
++..+.. . +.+. .....++..+...|...|++++|...++ ...+..
T Consensus 207 ~~al~~~----------------------------~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~-~al~~~~ 254 (411)
T 4a1s_A 207 QENLKLM----------------------------R---DLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQ-ERLRIAR 254 (411)
T ss_dssp HHHHHHH----------------------------H---HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHH----------------------------H---HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHH-HHHHHHH
Confidence 4432210 0 0000 0112244444555555555555555554 221100
Q ss_pred CCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC----CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcC
Q 010202 374 VAPD----TSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCK----PNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKH 445 (515)
Q Consensus 374 ~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 445 (515)
-.++ ...+..+...|...|++++|.+.+++..+..... ....++..+...+...|++++|. .++++..+..
T Consensus 255 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~ 333 (411)
T 4a1s_A 255 EFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAI-EYHNRHLAIA 333 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHH
Confidence 0011 2255666666777777777777776665421000 11345666667777777777777 6666665421
Q ss_pred CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010202 446 HLSLD----ITTYTLVIHGLCRANKCEWAYLLFKEMIG 479 (515)
Q Consensus 446 ~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 479 (515)
.-..+ ...+..+...|.+.|++++|.+.+++..+
T Consensus 334 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 334 QELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11111 34566677777788888888888777764
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.4e-13 Score=131.74 Aligned_cols=271 Identities=12% Similarity=0.014 Sum_probs=183.4
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CC-CCCHHH
Q 010202 135 EIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTL----NTIAKVMRRFSGAGQWEDAVRTFDELGTF----GL-EKNTET 205 (515)
Q Consensus 135 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~ 205 (515)
..+..+...+...|++++|...|+++.+.++.+. .++..+...|...|++++|++.|++..+. +- .....+
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 4455567788889999999999999887666554 46777888899999999999999887653 11 224567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcC------CCCChhhHHHHHHHHHccCC-----------------hhHHHHHHHH
Q 010202 206 MNLLLDTLCKEGKVELARSVFLELKSC------IPPNAHTFNIFIHGWCKINR-----------------VDEAQWTIQE 262 (515)
Q Consensus 206 ~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~ 262 (515)
+..+...|...|++++|...+++.... .+....++..+...|...|+ +++|...+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 788888999999999999999883321 22335578888999999999 8888888887
Q ss_pred HHhC----CC-CccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010202 263 MKGH----GC-HPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGC-PPN----VVTYTTVMSYLAKSGDFEEAIRITEK 332 (515)
Q Consensus 263 ~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~a~~~~~~ 332 (515)
..+. +- .....++..+...|...|++++|++.+++..+... .++ ..++..+...+...|++++|.+.+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 6542 11 11234677788888888998888888887765310 011 23666777777788888888888877
Q ss_pred HHhcCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhC----CC-CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 010202 333 MKIVGSK-----PDSRFFNCLIYTLGRASRVQEAVYVYQVEMPEN----GV-APDTSTFNTMITMFSHHGHHEKAFHVLE 402 (515)
Q Consensus 333 ~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~ 402 (515)
..+.... ....++..+...|...|++++|...++ ..... +. .....++..+...|...|++++|.+.++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~-~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHN-RHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 6543110 113455666666777777777777666 32211 00 0012355556666666666666666666
Q ss_pred HHHh
Q 010202 403 EMNK 406 (515)
Q Consensus 403 ~m~~ 406 (515)
+..+
T Consensus 368 ~al~ 371 (411)
T 4a1s_A 368 QHLQ 371 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.4e-13 Score=131.24 Aligned_cols=274 Identities=13% Similarity=0.026 Sum_probs=167.3
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-C
Q 010202 132 HSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTL----NTIAKVMRRFSGAGQWEDAVRTFDELGTF----GLEK-N 202 (515)
Q Consensus 132 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~ 202 (515)
.....+......+.+.|++++|...|+++...++.+. .++..+...+...|++++|+..|++.... +-.| .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 4556667777888888888888888888877665553 45666778888888888888888776432 1111 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC--CC----hhhHHHHHHHHHccCC--------------------hhHH
Q 010202 203 TETMNLLLDTLCKEGKVELARSVFLELKSCIP--PN----AHTFNIFIHGWCKINR--------------------VDEA 256 (515)
Q Consensus 203 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~----~~~~~~li~~~~~~g~--------------------~~~A 256 (515)
..++..+...+...|++++|...+++.....+ ++ ..++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 44666777778888888888888776322100 11 3467777777777777 7777
Q ss_pred HHHHHHHHhC----CC-CccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHH
Q 010202 257 QWTIQEMKGH----GC-HPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGC-PPN----VVTYTTVMSYLAKSGDFEEA 326 (515)
Q Consensus 257 ~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~a 326 (515)
...+++.... +. +....++..+...|...|++++|++.+++..+... .++ ..++..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 7777665431 11 11134566677777777777777777776654210 111 23566666677777777777
Q ss_pred HHHHHHHHhcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHhhchhC-CCCCC----HHHHHHHHHHHHhCCCHHH
Q 010202 327 IRITEKMKIVGS-KPD----SRFFNCLIYTLGRASRVQEAVYVYQVEMPEN-GVAPD----TSTFNTMITMFSHHGHHEK 396 (515)
Q Consensus 327 ~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~----~~~~~~li~~~~~~g~~~~ 396 (515)
...+++..+... ..+ ..++..+...|...|++++|...++ ..... .-..+ ..++..+...|...|++++
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~-~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHL-KHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 777766654210 011 3455566666666667666666665 32211 00011 3355556666666666666
Q ss_pred HHHHHHHHHh
Q 010202 397 AFHVLEEMNK 406 (515)
Q Consensus 397 A~~~~~~m~~ 406 (515)
|.+.+++..+
T Consensus 326 A~~~~~~al~ 335 (406)
T 3sf4_A 326 AMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=6.8e-13 Score=128.04 Aligned_cols=305 Identities=11% Similarity=-0.003 Sum_probs=158.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CC---CCC
Q 010202 167 TLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKN----TETMNLLLDTLCKEGKVELARSVFLELKS---CI---PPN 236 (515)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~---~~~ 236 (515)
....+......+...|++++|+..|++..+.+ +.+ ...+..+...+...|++++|...+++... .. +..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 34444555666677777777777777766642 222 23455666666666666666666665211 01 112
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHhCC----C-CccHhHHHHHHHHHHhcCC-------------hhHHHHHHHHH
Q 010202 237 AHTFNIFIHGWCKINRVDEAQWTIQEMKGHG----C-HPCVISYSTIIQSYCRQYN-------------FSKVYELLDEM 298 (515)
Q Consensus 237 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~-~~~~~~~~~li~~~~~~g~-------------~~~A~~~~~~m 298 (515)
..++..+...|...|++++|...+++..+.. - .....++..+...|...|+ ++++.+.
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~---- 162 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA---- 162 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH----
Confidence 3345555555556666666666555544320 0 0002244444445555555 0000000
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhC-
Q 010202 299 QAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIV----GS-KPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPEN- 372 (515)
Q Consensus 299 ~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~- 372 (515)
+++|.+.+.+..+. +. +....++..+...|...|++++|...++ ...+.
T Consensus 163 ------------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~-~al~~~ 217 (406)
T 3sf4_A 163 ------------------------LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHE-QRLLIA 217 (406)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHH-HHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHH-HHHHHH
Confidence 44444444433221 10 0112344555555666666666666655 22110
Q ss_pred CCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCC----HHhHHHHHHHHHhcCChHHHHHHHHHHHHHc
Q 010202 373 GVAPD----TSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPN----VQTFHPLLKSCFKTGKTDECLSQLLDDMVNK 444 (515)
Q Consensus 373 ~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 444 (515)
.-.++ ...+..+...|...|++++|...+++..+.....++ ..++..+...+...|++++|. ..+++..+.
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a~~~ 296 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI-DYHLKHLAI 296 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHH-HHHHHHHHH
Confidence 00111 235666677777777777777777776542100111 445667777777888888887 777766552
Q ss_pred CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCH
Q 010202 445 HHLSLD----ITTYTLVIHGLCRANKCEWAYLLFKEMIGH----DITP-RYQTCRLILDEVKQKHMY 502 (515)
Q Consensus 445 ~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~ 502 (515)
..-.++ ...+..+...|...|++++|.+.+++..+. +..+ ...++..+...+...|+.
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 211122 446667777888888888888888776542 2111 123444555555555544
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.6e-12 Score=110.59 Aligned_cols=167 Identities=11% Similarity=0.077 Sum_probs=138.2
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 010202 133 SSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDT 212 (515)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 212 (515)
++.+|..+...|.+.|++++|++.|++..+.+|.+..++..+...|.+.|++++|+..+....... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 677888899999999999999999999888888888888888889999999999999988887753 4466777777888
Q ss_pred HHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHH
Q 010202 213 LCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVY 292 (515)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 292 (515)
+...++++.+...+.+.....+.+...+..+...|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|+
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHH
Confidence 8888888888888888666667778888888888888888888888888887754 346677888888888888888888
Q ss_pred HHHHHHHHC
Q 010202 293 ELLDEMQAQ 301 (515)
Q Consensus 293 ~~~~~m~~~ 301 (515)
+.|++..+.
T Consensus 162 ~~~~~al~~ 170 (184)
T 3vtx_A 162 KYFKKALEK 170 (184)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhC
Confidence 888887764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.9e-13 Score=125.90 Aligned_cols=163 Identities=10% Similarity=-0.024 Sum_probs=85.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-CHHHHH
Q 010202 137 YEMMVDILGKVRQMDQMRALLEEMSKGHIVT----LNTIAKVMRRFSGAGQWEDAVRTFDELGTF----GLEK-NTETMN 207 (515)
Q Consensus 137 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~ 207 (515)
+......+...|++++|...|+++.+.++.+ ...+..+...+...|++++|++.+++..+. +..| ...++.
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 3344556667777777777777776655444 345556666777777777777777665432 1111 234455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCC--CCC----hhhHHHHHHHHHccCC--------------------hhHHHHHHH
Q 010202 208 LLLDTLCKEGKVELARSVFLELKSCI--PPN----AHTFNIFIHGWCKINR--------------------VDEAQWTIQ 261 (515)
Q Consensus 208 ~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~ 261 (515)
.+...+...|++++|...+.+..... .++ ..++..+...|...|+ +++|...++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 56666666666666666666522110 011 2245555556666666 555555555
Q ss_pred HHHhC----CC-CccHhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010202 262 EMKGH----GC-HPCVISYSTIIQSYCRQYNFSKVYELLDEMQ 299 (515)
Q Consensus 262 ~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 299 (515)
+.... +. .....++..+...+...|++++|++.+++..
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 210 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 210 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44321 00 0112244444555555555555555555443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.52 E-value=6e-13 Score=124.64 Aligned_cols=134 Identities=10% Similarity=-0.018 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhchhC-CCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCC----H
Q 010202 344 FFNCLIYTLGRASRVQEAVYVYQVEMPEN-GVAPD----TSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPN----V 414 (515)
Q Consensus 344 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~ 414 (515)
++..+...|...|++++|...++ ...+. ...++ ...+..+...+...|++++|.+.+++..+.....++ .
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~-~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHE-QRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHH-HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 44445555555666666655555 22110 00011 225556666666677777777777666542100111 3
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010202 415 QTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLD----ITTYTLVIHGLCRANKCEWAYLLFKEMIG 479 (515)
Q Consensus 415 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 479 (515)
.++..+...+...|++++|. ..+++..+...-..+ ...+..+...+.+.|++++|.+.+++..+
T Consensus 264 ~~~~~la~~~~~~g~~~~A~-~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAI-DYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHH-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 45556666667777777776 666665442111111 33555666677777777777777777664
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.47 E-value=4.8e-11 Score=110.49 Aligned_cols=183 Identities=10% Similarity=0.040 Sum_probs=100.1
Q ss_pred HHHHHHHHHhhcC-CCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCcc-Hh-HHHHHHHHHHhcCChhHHHHHHH
Q 010202 220 ELARSVFLELKSC-IPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPC-VI-SYSTIIQSYCRQYNFSKVYELLD 296 (515)
Q Consensus 220 ~~a~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~-~~~~li~~~~~~g~~~~A~~~~~ 296 (515)
++|..+|++.... .|.+...|..++..+.+.|++++|..+|++..+. .|+ .. .|..++..+.+.|++++|.++|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 5555555554332 3334445555555555556666666666655553 232 22 55555666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhC-CC
Q 010202 297 EMQAQGCPPNVVTYTTVMSYLA-KSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPEN-GV 374 (515)
Q Consensus 297 ~m~~~g~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~ 374 (515)
+..+... ++...|........ ..|++++|.++|+...+.. +.+...|..++..+.+.|++++|..+|+ ..... ..
T Consensus 159 ~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~-~al~~~~l 235 (308)
T 2ond_A 159 KAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFE-RVLTSGSL 235 (308)
T ss_dssp HHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHH-HHHHSSSS
T ss_pred HHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHH-HHHhccCC
Confidence 6555421 22333332222211 2466666666666666542 3355666666666666667777776666 44332 12
Q ss_pred CC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010202 375 AP--DTSTFNTMITMFSHHGHHEKAFHVLEEMNKL 407 (515)
Q Consensus 375 ~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 407 (515)
.| ....|..++....+.|+.++|..+++++.+.
T Consensus 236 ~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33 3456666666666667777777777666663
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.4e-11 Score=118.08 Aligned_cols=231 Identities=6% Similarity=-0.007 Sum_probs=123.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CC-----CHHHHH
Q 010202 278 IIQSYCRQYNFSKVYELLDEMQAQ----GCPP-NVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGS-KP-----DSRFFN 346 (515)
Q Consensus 278 li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~-----~~~~~~ 346 (515)
....+...|++++|++.+++..+. +-.+ ...++..+...|...|+++.|...+.+..+... .+ ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344455566666666666665542 1111 124555566666666666666666666554210 01 123555
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhchhCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCC-CCCHHhH
Q 010202 347 CLIYTLGRASRVQEAVYVYQVEMPENGVAPD----TSTFNTMITMFSHHGHHEKAFHVLEEMNKL----EHC-KPNVQTF 417 (515)
Q Consensus 347 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~p~~~~~ 417 (515)
.+...|...|++++|...|+..+....-.++ ..++..+...|...|++++|++.+++..+. + . +....++
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~ 267 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN-ILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CGGGHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc-cchhHHHHH
Confidence 5666666666666666666522211000011 135666666677777777777777666551 2 1 2224456
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCC---HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HHHHH
Q 010202 418 HPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLD---ITTYTLVIHGLCRANK---CEWAYLLFKEMIGHDITPR-YQTCR 490 (515)
Q Consensus 418 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~-~~~~~ 490 (515)
..+...+.+.|++++|. ..+++..+......+ ...+..+...+...|+ +++|..++++. +..|+ ...+.
T Consensus 268 ~~l~~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~ 343 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAH-EYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAI 343 (383)
T ss_dssp HHHHHHHHHTTCHHHHH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHH
Confidence 66666677777777776 666665542111111 2224455566666666 55566555554 22332 23444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 010202 491 LILDEVKQKHMYDAAEKIEAVMK 513 (515)
Q Consensus 491 ~ll~~~~~~g~~~~a~~~~~~m~ 513 (515)
.+...+...|++++|.+.++...
T Consensus 344 ~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 344 DVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 55556677777777777776654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.5e-12 Score=125.55 Aligned_cols=211 Identities=9% Similarity=-0.031 Sum_probs=135.4
Q ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCCh-HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010202 114 WKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQM-DQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFD 192 (515)
Q Consensus 114 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 192 (515)
.+.++..+..... ..+.+...+..+...|...|++ ++|++.|++..+.++....++..+...|.+.|++++|++.|+
T Consensus 84 ~~~al~~l~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLG--SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHT--TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3445555554432 1234667777777777777777 777777777777677677777777777777777777777777
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcc--------CChhH
Q 010202 193 ELGTFGLEKNTETMNLLLDTLCKE---------GKVELARSVFLELKSCIPPNAHTFNIFIHGWCKI--------NRVDE 255 (515)
Q Consensus 193 ~m~~~g~~~~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~ 255 (515)
+..+. .|+...+..+..++... |++++|+..|++.....+.+...|..+..+|... |++++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 77664 45566666677777776 7777777777765444555666677777766666 66677
Q ss_pred HHHHHHHHHhCCCC---ccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010202 256 AQWTIQEMKGHGCH---PCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRIT 330 (515)
Q Consensus 256 A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 330 (515)
|...|++..+.. + .+...|..+..+|...|++++|++.|++..+.. +.+..++..+...+...|++++|.+.+
T Consensus 240 A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 240 ALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777666666542 1 255566666666666666666666666666542 224455566666666666666665544
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=8.3e-12 Score=122.88 Aligned_cols=214 Identities=11% Similarity=-0.006 Sum_probs=170.8
Q ss_pred ChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010202 149 QMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQW-EDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFL 227 (515)
Q Consensus 149 ~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 227 (515)
.++++...+++.....+.....+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|.+.|+
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 367777888887777777888888888889999999 99999999888753 3467888888889999999999999998
Q ss_pred HhhcCCCCChhhHHHHHHHHHcc---------CChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhc--------CChhH
Q 010202 228 ELKSCIPPNAHTFNIFIHGWCKI---------NRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQ--------YNFSK 290 (515)
Q Consensus 228 ~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~ 290 (515)
+.... .|+...+..+...|... |++++|...|++..+.. +.+...|..+..+|... |++++
T Consensus 162 ~al~~-~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 162 GALTH-CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHTT-CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhh-CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 85443 35578888888888888 88899999998887764 34577888888888888 88888
Q ss_pred HHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010202 291 VYELLDEMQAQGCP--PNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQ 366 (515)
Q Consensus 291 A~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 366 (515)
|++.|++..+.... -+...+..+..+|...|++++|.+.|++..+.. +.+...+..+...+...|++++|...+.
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 98888888875210 367788888888888888888888888888764 4556677888888888888888887765
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.44 E-value=5.1e-11 Score=110.33 Aligned_cols=216 Identities=9% Similarity=0.055 Sum_probs=151.5
Q ss_pred HHHHHHHHhccCCCCCCCHHHHHHHHHHHH-------cCCCh-------HHHHHHHHHHhc-CCCCCHHHHHHHHHHHHh
Q 010202 116 SALGIFRWAGSCPGYEHSSEIYEMMVDILG-------KVRQM-------DQMRALLEEMSK-GHIVTLNTIAKVMRRFSG 180 (515)
Q Consensus 116 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~-~~~~~~~~~~~li~~~~~ 180 (515)
.|...|+.+... .+.++.+|..++..+. +.|++ ++|..+|++... .++.+...+..++..+.+
T Consensus 34 ~a~~~~~~al~~--~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 34 RVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 456666666532 2457778888887775 34775 788888888887 477777777777888888
Q ss_pred cCCHHHHHHHHHHHhhCCCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHH-ccCChhHHH
Q 010202 181 AGQWEDAVRTFDELGTFGLEK-NTE-TMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWC-KINRVDEAQ 257 (515)
Q Consensus 181 ~g~~~~A~~~~~~m~~~g~~~-~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~ 257 (515)
.|++++|.++|++..+. .| +.. .|..++..+.+.|++++|..+|++.....+.+...|...+.... ..|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888888874 44 333 67778888888888888888888855544555555554443322 257888888
Q ss_pred HHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010202 258 WTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQG-CPP--NVVTYTTVMSYLAKSGDFEEAIRITEKMK 334 (515)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 334 (515)
.+|++..+.. +.+...|..++..+.+.|++++|..+|++..... +.| ....|..++....+.|+.+.|..+++++.
T Consensus 190 ~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 190 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888776542 3356677777777777788888888888777752 344 35567777777777788888887777776
Q ss_pred hc
Q 010202 335 IV 336 (515)
Q Consensus 335 ~~ 336 (515)
+.
T Consensus 269 ~~ 270 (308)
T 2ond_A 269 TA 270 (308)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.3e-09 Score=108.61 Aligned_cols=407 Identities=10% Similarity=0.070 Sum_probs=273.0
Q ss_pred cCCHHHHHHHHHHhh--hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCC---hHHHHHHHHHHhcCCC--CCHH
Q 010202 97 QPSHYLVNKLIHRFK--DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQ---MDQMRALLEEMSKGHI--VTLN 169 (515)
Q Consensus 97 ~p~~~~~~~ll~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~--~~~~ 169 (515)
+-|..+|..++..+. +....+..+++.+.. -++.+...|...++.-.+.|+ ++.+..+|+......+ ++..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~--~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHD--RFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 348899999999875 478889999999873 356788899999999999999 9999999999988663 5655
Q ss_pred HHHHHHHHHHhcCCH--------HHHHHHHHHHhh-CCC-CC-CHHHHHHHHHHHH---------HcCCHHHHHHHHHHh
Q 010202 170 TIAKVMRRFSGAGQW--------EDAVRTFDELGT-FGL-EK-NTETMNLLLDTLC---------KEGKVELARSVFLEL 229 (515)
Q Consensus 170 ~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~~-~~~~~~~ll~~~~---------~~~~~~~a~~~~~~~ 229 (515)
....-+....+.++. +...++|+.... .|. .+ +...|...+.... ..++++.+.++|++.
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 544334444344432 334578877654 465 55 4567777776544 234578889999885
Q ss_pred hcCCCCC--hhhHHHHHHHHHccC-------------ChhHHHHHHHHHHh--CCC----C-----------c-------
Q 010202 230 KSCIPPN--AHTFNIFIHGWCKIN-------------RVDEAQWTIQEMKG--HGC----H-----------P------- 270 (515)
Q Consensus 230 ~~~~~~~--~~~~~~li~~~~~~g-------------~~~~A~~~~~~~~~--~~~----~-----------~------- 270 (515)
.. +|.. ..+|......-...+ +++.|...+.++.. .++ + |
T Consensus 221 L~-iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~ 299 (679)
T 4e6h_A 221 LC-QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDV 299 (679)
T ss_dssp TT-SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCH
T ss_pred Hh-CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHH
Confidence 53 3322 234433322221111 12234444444321 111 1 1
Q ss_pred -cHhHHHHHHHHHHhcC-------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhcCCCCC
Q 010202 271 -CVISYSTIIQSYCRQY-------NFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAI-RITEKMKIVGSKPD 341 (515)
Q Consensus 271 -~~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~~~~~~~~~~ 341 (515)
....|...+..--..+ ..+.+..+|++.... ++-+...|...+..+...|+.++|. ++++..... ++.+
T Consensus 300 ~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s 377 (679)
T 4e6h_A 300 QQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNS 377 (679)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTC
T ss_pred HHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCC
Confidence 0134555554433322 123456778887765 3446778888888888889999996 999999875 3567
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhchhCC---------CCCC------------HHHHHHHHHHHHhCCCHHHHHHH
Q 010202 342 SRFFNCLIYTLGRASRVQEAVYVYQVEMPENG---------VAPD------------TSTFNTMITMFSHHGHHEKAFHV 400 (515)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---------~~~~------------~~~~~~li~~~~~~g~~~~A~~~ 400 (515)
...+-..+...-+.|+++.|..+|+ ...... ..|+ ...|...+....+.|..+.|..+
T Consensus 378 ~~Lwl~~a~~ee~~~~~e~aR~iye-k~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~v 456 (679)
T 4e6h_A 378 AVLAFSLSEQYELNTKIPEIETTIL-SCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKI 456 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7778888888999999999999999 544321 0132 33688888888888999999999
Q ss_pred HHHHHhC-CCCCCCHHhHHHHHHHHHhc-CChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010202 401 LEEMNKL-EHCKPNVQTFHPLLKSCFKT-GKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMI 478 (515)
Q Consensus 401 ~~~m~~~-~~~~p~~~~~~~ll~~~~~~-g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 478 (515)
|.++.+. + .+....|......-.+. ++.+.|. .+|+...+.++ -+...|...++.....|+.+.|..+|++..
T Consensus 457 f~~A~~~~~--~~~~~lyi~~A~lE~~~~~d~e~Ar-~ife~~Lk~~p--~~~~~w~~y~~fe~~~~~~~~AR~lferal 531 (679)
T 4e6h_A 457 FGKCRRLKK--LVTPDIYLENAYIEYHISKDTKTAC-KVLELGLKYFA--TDGEYINKYLDFLIYVNEESQVKSLFESSI 531 (679)
T ss_dssp HHHHHHTGG--GSCTHHHHHHHHHHHTTTSCCHHHH-HHHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHHhcC--CCChHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHCC--CchHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999885 3 12233343333223344 4589998 99999998643 356678889999999999999999999998
Q ss_pred hCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010202 479 GHDITP--RYQTCRLILDEVKQKHMYDAAEKIEAVMKK 514 (515)
Q Consensus 479 ~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 514 (515)
.....+ ....|...+.--.+.|+.+.+.++.+++.+
T Consensus 532 ~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~ 569 (679)
T 4e6h_A 532 DKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE 569 (679)
T ss_dssp TTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 643222 234677777766889999999999998864
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.9e-11 Score=102.61 Aligned_cols=167 Identities=16% Similarity=0.105 Sum_probs=113.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 010202 167 TLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHG 246 (515)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 246 (515)
+...|..+...|.+.|++++|++.|++..+.. +-+..++..+..+|...|++++|...+.......+.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 45566667777777777777777777776643 33566677777777777777777777777555555666667777777
Q ss_pred HHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010202 247 WCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEA 326 (515)
Q Consensus 247 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 326 (515)
+...++++.|...+.+..... +.+...+..+...+.+.|++++|++.|++..+.. +.+..++..+..++.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 777777777777777766543 3345666677777777777777777777766653 23566677777777777777777
Q ss_pred HHHHHHHHhc
Q 010202 327 IRITEKMKIV 336 (515)
Q Consensus 327 ~~~~~~~~~~ 336 (515)
.+.|++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 7777776653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.8e-11 Score=115.94 Aligned_cols=228 Identities=9% Similarity=-0.009 Sum_probs=108.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CCC----CChhhHH
Q 010202 174 VMRRFSGAGQWEDAVRTFDELGTF----GLEK-NTETMNLLLDTLCKEGKVELARSVFLELKS---CIP----PNAHTFN 241 (515)
Q Consensus 174 li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~----~~~~~~~ 241 (515)
....+...|++++|++.|++..+. +-.+ ...++..+...|...|+++.|...+.+... ..+ ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344555666666666666665442 1011 223455566666666666666666655221 111 1123455
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhC----CCC-ccHhHHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CCCHHHHH
Q 010202 242 IFIHGWCKINRVDEAQWTIQEMKGH----GCH-PCVISYSTIIQSYCRQYNFSKVYELLDEMQAQ----GC-PPNVVTYT 311 (515)
Q Consensus 242 ~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~~~ 311 (515)
.+...|...|++++|...|++..+. +-. ....++..+...|...|++++|++.+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 5556666666666666666555432 100 01124555555666666666666666555441 11 22234455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHhhchhCCCCCC-HHHHHH
Q 010202 312 TVMSYLAKSGDFEEAIRITEKMKIVG----SKPDSRFFNCLIYTLGRASR---VQEAVYVYQVEMPENGVAPD-TSTFNT 383 (515)
Q Consensus 312 ~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~~-~~~~~~ 383 (515)
.+...+.+.|++++|...+++..+.. -+.....+..+...|...|+ +++|..+++ ... ..|+ ...+..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~-~~~---~~~~~~~~~~~ 344 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLE-SKM---LYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHH-HTT---CHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HCc---CHHHHHHHHHH
Confidence 55555556666666666555554321 01111123334444445555 444444444 221 1111 223444
Q ss_pred HHHHHHhCCCHHHHHHHHHHHH
Q 010202 384 MITMFSHHGHHEKAFHVLEEMN 405 (515)
Q Consensus 384 li~~~~~~g~~~~A~~~~~~m~ 405 (515)
+...|...|++++|.+.+++..
T Consensus 345 la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 4455555555555555555443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.39 E-value=3.9e-11 Score=101.59 Aligned_cols=164 Identities=14% Similarity=0.064 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 010202 135 EIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLC 214 (515)
Q Consensus 135 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 214 (515)
..+..+...+...|++++|.+.|+++...++.+..++..+...+...|++++|.+.++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3455556666666666666666666666555566666666666666666666666666665542 334555555666666
Q ss_pred HcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHH
Q 010202 215 KEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYEL 294 (515)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 294 (515)
..|++++|.+.++++....+.+...+..+...+.+.|++++|...+++..+.. +.+...+..+...+...|++++|.+.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666665444344455555555556666666666666665555432 22344555555555555555555555
Q ss_pred HHHHHH
Q 010202 295 LDEMQA 300 (515)
Q Consensus 295 ~~~m~~ 300 (515)
+++..+
T Consensus 167 ~~~~~~ 172 (186)
T 3as5_A 167 FKKANE 172 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=8.3e-12 Score=115.60 Aligned_cols=234 Identities=12% Similarity=0.055 Sum_probs=162.4
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHhc--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------
Q 010202 132 HSSEIYEMMVDILGKVRQMDQMRALLEEMSK--------GHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTF------ 197 (515)
Q Consensus 132 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------ 197 (515)
.+..++..+...|...|++++|..+|+++.+ ..+....++..+...|...|++++|++.|++..+.
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 3567788888999999999999999998876 34445667778889999999999999999888753
Q ss_pred CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc-------C-CCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC--
Q 010202 198 GL-EKNTETMNLLLDTLCKEGKVELARSVFLELKS-------C-IPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGH-- 266 (515)
Q Consensus 198 g~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-- 266 (515)
+- +....++..+...+...|++++|...+++... . .+....++..+...+...|++++|...+++..+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 21 22456778888899999999999999988432 1 2334567888899999999999999999988664
Q ss_pred ----C-CCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCCCHHH-------HHHHHHHHHhcCCHHHHH
Q 010202 267 ----G-CHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQ-------GCPPNVVT-------YTTVMSYLAKSGDFEEAI 327 (515)
Q Consensus 267 ----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~~~~~~-------~~~li~~~~~~g~~~~a~ 327 (515)
+ .+....++..+...|...|++++|++.++++.+. ...+.... +..+...+...+.+.++.
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 264 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG 264 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 1 1223457888899999999999999999988753 11222111 222222333344455555
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010202 328 RITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQ 366 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 366 (515)
..+....... +....++..+...|.+.|++++|...|+
T Consensus 265 ~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 302 (311)
T 3nf1_A 265 GWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEE 302 (311)
T ss_dssp ---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5666555432 3456778889999999999999999998
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-10 Score=111.25 Aligned_cols=229 Identities=7% Similarity=-0.007 Sum_probs=125.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----C-CCHHHHHH
Q 010202 279 IQSYCRQYNFSKVYELLDEMQAQGC-PPN----VVTYTTVMSYLAKSGDFEEAIRITEKMKIVGS-----K-PDSRFFNC 347 (515)
Q Consensus 279 i~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----~-~~~~~~~~ 347 (515)
...+...|++++|+..|++..+... .++ ..++..+...|...|+++.|...+.+..+... . ....+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3444566666777766666654210 111 34555566666666777776666666554210 0 11345556
Q ss_pred HHHHHHhcCCHHHHHHHHHhhchh---CCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-----CCCCCCCHHhHH
Q 010202 348 LIYTLGRASRVQEAVYVYQVEMPE---NGVAP-DTSTFNTMITMFSHHGHHEKAFHVLEEMNK-----LEHCKPNVQTFH 418 (515)
Q Consensus 348 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~p~~~~~~ 418 (515)
+...|...|++++|...|+..+.. .+..+ ...+++.+...|...|++++|++.+++..+ .. +....++.
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~ 265 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP--DLLPKVLF 265 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG--GGHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC--hhHHHHHH
Confidence 666666777777776666522211 11001 123556666667777777777777776665 22 22245566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHcCCCCCC---HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCH-HHHHH
Q 010202 419 PLLKSCFKTGKTDECLSQLLDDMVNKHHLSLD---ITTYTLVIHGLCRANK---CEWAYLLFKEMIGHDITPRY-QTCRL 491 (515)
Q Consensus 419 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~-~~~~~ 491 (515)
.+...+.+.|++++|. ..+++..+......+ ...+..+...+...|+ +++|+..+++. +..|+. ..+..
T Consensus 266 ~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 341 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAF-QFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHTTCHHHHH-HHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHH
Confidence 6666777777777777 666666653322111 2334445555555666 56666665552 222322 23444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 010202 492 ILDEVKQKHMYDAAEKIEAVMK 513 (515)
Q Consensus 492 ll~~~~~~g~~~~a~~~~~~m~ 513 (515)
+...+...|++++|.+.++...
T Consensus 342 la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 5556677777777777776654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-11 Score=112.95 Aligned_cols=241 Identities=12% Similarity=0.124 Sum_probs=169.9
Q ss_pred ccHhHHHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------
Q 010202 270 PCVISYSTIIQSYCRQYNFSKVYELLDEMQAQ-------GCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIV------ 336 (515)
Q Consensus 270 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------ 336 (515)
.+..++..+...+...|++++|+.+++++.+. .......++..+...+...|++++|...++++.+.
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 34677899999999999999999999998873 22334567888899999999999999999998764
Q ss_pred CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhC------CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC-
Q 010202 337 GS-KPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPEN------GVAP-DTSTFNTMITMFSHHGHHEKAFHVLEEMNKL- 407 (515)
Q Consensus 337 ~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 407 (515)
+- +....++..+...|...|++++|...++ ...+. +..| ....+..+...+...|++++|+++++++.+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCK-RALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH-HHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHH-HHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 21 2335678888999999999999999998 54432 2222 3457888899999999999999999999874
Q ss_pred -----CCCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHHHcC------CCCCC-------HHHHHHHHHHHHhcCCHH
Q 010202 408 -----EHCKPN-VQTFHPLLKSCFKTGKTDECLSQLLDDMVNKH------HLSLD-------ITTYTLVIHGLCRANKCE 468 (515)
Q Consensus 408 -----~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~------~~~p~-------~~~~~~li~~~~~~g~~~ 468 (515)
+ ..|+ ..++..+...+...|++++|. ..++++.+.. ...+. ...+..+...+...+.+.
T Consensus 184 ~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (311)
T 3nf1_A 184 QTKLGP-DDPNVAKTKNNLASCYLKQGKFKQAE-TLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFG 261 (311)
T ss_dssp HHTSCT-TCHHHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSC
T ss_pred HHHhCC-CCHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHH
Confidence 2 1333 456788889999999999999 8999887621 11111 122233334445556677
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010202 469 WAYLLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVMKK 514 (515)
Q Consensus 469 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 514 (515)
+|...+++.... .+.+..++..+...+...|++++|.+.++...+
T Consensus 262 ~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 262 EYGGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777777777542 123455777888889999999999999988764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=3.6e-11 Score=123.22 Aligned_cols=168 Identities=9% Similarity=0.054 Sum_probs=151.1
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 010202 131 EHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLL 210 (515)
Q Consensus 131 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 210 (515)
+.++.+++.|...|.+.|++++|++.|++..+.++....++..+...|.+.|++++|++.|++..+.. +-+...|..+.
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999998853 34688999999
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhH
Q 010202 211 DTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSK 290 (515)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 290 (515)
.+|...|++++|++.|++..+..+.+..+|+.+..+|.+.|++++|+..|++..+.. +-+...|..+..++...|++++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 999999999999999999665567789999999999999999999999999998864 3357889999999999999999
Q ss_pred HHHHHHHHHH
Q 010202 291 VYELLDEMQA 300 (515)
Q Consensus 291 A~~~~~~m~~ 300 (515)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.4e-09 Score=103.54 Aligned_cols=266 Identities=11% Similarity=0.020 Sum_probs=153.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHhhcC--CCCC----hhhHHHHHH
Q 010202 176 RRFSGAGQWEDAVRTFDELGTFGLEKNTE----TMNLLLDTLCKEGKVELARSVFLELKSC--IPPN----AHTFNIFIH 245 (515)
Q Consensus 176 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~li~ 245 (515)
..+...|++++|...+++........+.. .+..+...+...|++++|...+++.... ...+ ..++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34445566666666666555432111221 3344455556666666666666652210 0111 123455666
Q ss_pred HHHccCChhHHHHHHHHHHhC----CCC--c-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--C--CHHHHHHHH
Q 010202 246 GWCKINRVDEAQWTIQEMKGH----GCH--P-CVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCP--P--NVVTYTTVM 314 (515)
Q Consensus 246 ~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~--~~~~~~~li 314 (515)
.+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++....... + ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 677777777777777665432 211 2 2344556667777778888888887776653211 1 234566677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHhhchhCCCCC---CHHHHHHHH
Q 010202 315 SYLAKSGDFEEAIRITEKMKIVGSKPD--SRFFN----CLIYTLGRASRVQEAVYVYQVEMPENGVAP---DTSTFNTMI 385 (515)
Q Consensus 315 ~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~li 385 (515)
..+...|++++|...+++..+....++ ..... ..+..+...|++++|...++ ........+ ....+..+.
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~-~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLR-HTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHH-hCCCCCCCcchhhHHHHHHHH
Confidence 777788888888888887765311111 11111 23344667888888888887 544322111 123456677
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCC---CCCCH-HhHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010202 386 TMFSHHGHHEKAFHVLEEMNKLEH---CKPNV-QTFHPLLKSCFKTGKTDECLSQLLDDMVN 443 (515)
Q Consensus 386 ~~~~~~g~~~~A~~~~~~m~~~~~---~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 443 (515)
..+...|++++|...+++...... ..++. ..+..+..++...|+.++|. ..+++...
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~l~~al~ 321 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQ-RVLLDALK 321 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHH-HHHHHHHH
Confidence 788888888888888887754210 11222 24555667777888888888 77777655
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.32 E-value=2.2e-10 Score=96.83 Aligned_cols=162 Identities=12% Similarity=0.049 Sum_probs=90.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcc
Q 010202 171 IAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKI 250 (515)
Q Consensus 171 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 250 (515)
+..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|...+++.....+.+..++..+...+...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 3444555666666666666666655432 234555555666666666666666666654433444555555566666666
Q ss_pred CChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010202 251 NRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRIT 330 (515)
Q Consensus 251 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 330 (515)
|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+..++..+...+...|++++|.+.+
T Consensus 90 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666666555432 2344555555555555666666666665555442 223455555555555555555555555
Q ss_pred HHHHh
Q 010202 331 EKMKI 335 (515)
Q Consensus 331 ~~~~~ 335 (515)
+++.+
T Consensus 168 ~~~~~ 172 (186)
T 3as5_A 168 KKANE 172 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.9e-09 Score=102.67 Aligned_cols=293 Identities=11% Similarity=0.022 Sum_probs=202.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcCCCCCh-----hhHHHHHHHHHccCChhHHHHHHHHHHhC----CCC-ccHhHHH
Q 010202 207 NLLLDTLCKEGKVELARSVFLELKSCIPPNA-----HTFNIFIHGWCKINRVDEAQWTIQEMKGH----GCH-PCVISYS 276 (515)
Q Consensus 207 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~ 276 (515)
......+...|++++|...+++.....+++. .+++.+...+...|++++|...+++.... |.. ....++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 3445567788999999999998544333332 25677778889999999999999987642 211 0123456
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCHHHH
Q 010202 277 TIIQSYCRQYNFSKVYELLDEMQAQ----GCP--P-NVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSK----PDSRFF 345 (515)
Q Consensus 277 ~li~~~~~~g~~~~A~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~ 345 (515)
.+...+...|++++|.+.+++..+. +.. | ...++..+...+...|++++|...+++..+.... ....++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 7788899999999999999987652 222 2 2345667788899999999999999998764321 124567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhchhCCCCC-CHHHHH-----HHHHHHHhCCCHHHHHHHHHHHHhCCCCCC---CHHh
Q 010202 346 NCLIYTLGRASRVQEAVYVYQVEMPENGVAP-DTSTFN-----TMITMFSHHGHHEKAFHVLEEMNKLEHCKP---NVQT 416 (515)
Q Consensus 346 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~~~p---~~~~ 416 (515)
..+...+...|++++|...++ ........+ +...+. ..+..+...|++++|..++++..... ..+ ....
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~ 255 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLN-RLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE-FANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHH-HHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCC-CTTCGGGHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHH-HHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCC-CCcchhhHHH
Confidence 788888999999999999998 443221111 111222 23344778999999999999987643 111 1234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHc---CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC----C
Q 010202 417 FHPLLKSCFKTGKTDECLSQLLDDMVNK---HHLSLDI-TTYTLVIHGLCRANKCEWAYLLFKEMIGH----DIT----P 484 (515)
Q Consensus 417 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~----p 484 (515)
+..+...+...|++++|. ..+++.... .+..++. ..+..+..++...|+.++|...+++.... |.. .
T Consensus 256 ~~~la~~~~~~g~~~~A~-~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~~~ 334 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAE-IVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVI 334 (373)
T ss_dssp HHHHHHHHHHTTCHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHT
T ss_pred HHHHHHHHHHcCCHHHHH-HHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 667778899999999999 888877552 2222222 35667788899999999999999887642 211 1
Q ss_pred CHHHHHHHHHHHHhcCCH
Q 010202 485 RYQTCRLILDEVKQKHMY 502 (515)
Q Consensus 485 ~~~~~~~ll~~~~~~g~~ 502 (515)
.......++..+......
T Consensus 335 ~g~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 335 EGEAMAQQLRQLIQLNTL 352 (373)
T ss_dssp THHHHHHHHHHHHHTTCS
T ss_pred ccHHHHHHHHHHHhCCCC
Confidence 223345566777666665
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.1e-10 Score=108.41 Aligned_cols=31 Identities=13% Similarity=0.044 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHH--HcCCChHHHHHHHHHHhc
Q 010202 132 HSSEIYEMMVDIL--GKVRQMDQMRALLEEMSK 162 (515)
Q Consensus 132 ~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~ 162 (515)
|+..+-+.|-+.| ...+++++|.++++++..
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~ 40 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQ 40 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 4455556666666 667777888777777644
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.27 E-value=6.1e-10 Score=98.04 Aligned_cols=205 Identities=8% Similarity=-0.046 Sum_probs=157.4
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 010202 132 HSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHI-VTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLL 210 (515)
Q Consensus 132 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 210 (515)
.|+..+......+.+.|++++|.+.|++....++ .+..++..+..++...|++++|++.|++..+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 4678888999999999999999999999988777 777888778999999999999999999998864 33667888899
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCCCh-------hhHHHHHHHHHccCChhHHHHHHHHHHhCCCCcc---HhHHHHHHH
Q 010202 211 DTLCKEGKVELARSVFLELKSCIPPNA-------HTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPC---VISYSTIIQ 280 (515)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~ 280 (515)
.++...|++++|...+++.....|.+. .+|..+...+.+.|++++|...|++..+.. |+ ...|..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHHHHH
Confidence 999999999999999999665556666 568888889999999999999999998763 44 567777777
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 010202 281 SYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCL 348 (515)
Q Consensus 281 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 348 (515)
.|...|+ ..++++...+ ..+...|.... ....+.+++|...+++..+.. +.+..+...+
T Consensus 162 ~~~~~~~-----~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l 220 (228)
T 4i17_A 162 LFYNNGA-----DVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS-PNRTEIKQMQ 220 (228)
T ss_dssp HHHHHHH-----HHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 7765543 3445554443 22344444433 234567899999999998864 3344444433
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.26 E-value=2.6e-07 Score=93.70 Aligned_cols=422 Identities=9% Similarity=-0.011 Sum_probs=269.5
Q ss_pred CCChhhHHHHHHHhcCCCCHH---HHHHHhhccccCCCCcCCHHHHHHHHHHhh--hC---HHHHHHHHHHhccCCCCCC
Q 010202 61 SPRLPDIDVIISKVHVGSSED---EVFQSLKQDHVCNAIQPSHYLVNKLIHRFK--DD---WKSALGIFRWAGSCPGYEH 132 (515)
Q Consensus 61 ~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~g~~p~~~~~~~ll~~~~--~~---~~~a~~~~~~~~~~~~~~~ 132 (515)
+.|...|...+.......... .+|+++... .+.+...|..-+..-. ++ .+.+..+|+.+......+|
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-----fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~ 137 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-----FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNN 137 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCC
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCC
Confidence 457889999986554333333 367776652 3345556665555433 35 8899999999974332348
Q ss_pred CHHHHHHHHHHHHcCCCh--------HHHHHHHHHHhc---C-CCCC---HHHHHHHHHH------HHhcCCHHHHHHHH
Q 010202 133 SSEIYEMMVDILGKVRQM--------DQMRALLEEMSK---G-HIVT---LNTIAKVMRR------FSGAGQWEDAVRTF 191 (515)
Q Consensus 133 ~~~~~~~li~~~~~~g~~--------~~A~~~~~~~~~---~-~~~~---~~~~~~li~~------~~~~g~~~~A~~~~ 191 (515)
++..|..-++...+.++. +...++|+.... . ++.+ |..|..+... +..+++.+.+..+|
T Consensus 138 sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy 217 (679)
T 4e6h_A 138 DLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLY 217 (679)
T ss_dssp CHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHH
Confidence 999999988877666554 345578877653 2 3444 4444332221 12344578899999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHH-------------cCCHHHHHHHHHHhh---cCC----CCC---------------
Q 010202 192 DELGTFGLEKNTETMNLLLDTLCK-------------EGKVELARSVFLELK---SCI----PPN--------------- 236 (515)
Q Consensus 192 ~~m~~~g~~~~~~~~~~ll~~~~~-------------~~~~~~a~~~~~~~~---~~~----~~~--------------- 236 (515)
.+........-..+|......-.. ..+++.|...+.++. .++ +..
T Consensus 218 ~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~ 297 (679)
T 4e6h_A 218 KTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEY 297 (679)
T ss_dssp HHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCC
T ss_pred HHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchh
Confidence 999864222223344322211111 122344555554421 111 111
Q ss_pred ----hhhHHHHHHHHHccC-------ChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHH-HHHHHHHHCCCC
Q 010202 237 ----AHTFNIFIHGWCKIN-------RVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVY-ELLDEMQAQGCP 304 (515)
Q Consensus 237 ----~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~ 304 (515)
...|...+..--..+ ..+.+..+|++.... ++-+...|-..+..+...|+.++|. ++|+..... ++
T Consensus 298 ~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P 375 (679)
T 4e6h_A 298 DVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IP 375 (679)
T ss_dssp CHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CT
T ss_pred HHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CC
Confidence 134555555433322 123355678887664 2446788888888888999999997 999998864 44
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---------CCC------------HHHHHHHHHHHHhcCCHHHHHH
Q 010202 305 PNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGS---------KPD------------SRFFNCLIYTLGRASRVQEAVY 363 (515)
Q Consensus 305 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---------~~~------------~~~~~~li~~~~~~g~~~~A~~ 363 (515)
.+...+...+...-+.|+++.|.++|+.+..... .|+ ..+|...+....+.|+.+.|..
T Consensus 376 ~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~ 455 (679)
T 4e6h_A 376 NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRK 455 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHH
Confidence 5666677788888899999999999999886410 132 3467777888888999999999
Q ss_pred HHHhhchhCCCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010202 364 VYQVEMPENGVAPDTSTFNTMITMFSHH-GHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMV 442 (515)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 442 (515)
+|. ...+.........|...+..-.+. ++.+.|..+|+...+.- +-+...+...+......|+.+.|. .+|+...
T Consensus 456 vf~-~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR-~lferal 531 (679)
T 4e6h_A 456 IFG-KCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVK-SLFESSI 531 (679)
T ss_dssp HHH-HHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHH-HHHHHHT
T ss_pred HHH-HHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHH-HHHHHHH
Confidence 999 554430111233343333333333 55899999999998853 445566677888788899999998 9999997
Q ss_pred HcCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010202 443 NKHHLSL--DITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEV 496 (515)
Q Consensus 443 ~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 496 (515)
.... .+ ....|...+..-.+.|+.+.+.++.+++.+ ..|+......+..-|
T Consensus 532 ~~~~-~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~--~~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 532 DKIS-DSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE--KFPEVNKLEEFTNKY 584 (679)
T ss_dssp TTSS-STTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH--HSTTCCHHHHHHHHT
T ss_pred HhcC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCcHHHHHHHHh
Confidence 7321 11 356899999999999999999999999987 345555555555444
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.2e-10 Score=117.45 Aligned_cols=168 Identities=13% Similarity=0.056 Sum_probs=146.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHH
Q 010202 165 IVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFI 244 (515)
Q Consensus 165 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li 244 (515)
|.+..++..+...|.+.|++++|++.|++..+.. +-+..++..+..+|.+.|++++|++.|++..+..|.+..+|+.+.
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg 84 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3457788899999999999999999999998853 346889999999999999999999999996655677889999999
Q ss_pred HHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 010202 245 HGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFE 324 (515)
Q Consensus 245 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 324 (515)
.+|.+.|++++|++.|++..+.. +-+...|+.+..+|.+.|++++|++.|++..+.. +-+...+..+...+...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence 99999999999999999988764 3467889999999999999999999999998863 235788999999999999999
Q ss_pred HHHHHHHHHHh
Q 010202 325 EAIRITEKMKI 335 (515)
Q Consensus 325 ~a~~~~~~~~~ 335 (515)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988887754
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.2e-09 Score=94.42 Aligned_cols=194 Identities=11% Similarity=-0.038 Sum_probs=151.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 010202 166 VTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIH 245 (515)
Q Consensus 166 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 245 (515)
.+...+......+...|++++|++.|++..+...+++...+..+..++...|++++|+..+++.....|.+..++..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 35577778889999999999999999999887543788888889999999999999999999976666778889999999
Q ss_pred HHHccCChhHHHHHHHHHHhCCCCccH-------hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 010202 246 GWCKINRVDEAQWTIQEMKGHGCHPCV-------ISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPN---VVTYTTVMS 315 (515)
Q Consensus 246 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~ 315 (515)
.|...|++++|...|++..+.. +.+. ..|..+...+...|++++|++.|++..+. .|+ ..++..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 9999999999999999998763 2234 45788888899999999999999998875 454 456667777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchh
Q 010202 316 YLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPE 371 (515)
Q Consensus 316 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 371 (515)
.+... +..+++++...+ ..+...+..... ...+.+++|...|+ ...+
T Consensus 162 ~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~-~a~~ 208 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLG-EAVT 208 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHH-HHHH
T ss_pred HHHHH-----HHHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHH-HHhh
Confidence 76544 344556666554 344555554443 34567899999999 5444
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1.6e-10 Score=105.19 Aligned_cols=219 Identities=11% Similarity=0.062 Sum_probs=125.7
Q ss_pred CCChHHHHHHHHHHhc-------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------CCCC-CHHHHHHHHH
Q 010202 147 VRQMDQMRALLEEMSK-------GH-IVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTF------GLEK-NTETMNLLLD 211 (515)
Q Consensus 147 ~g~~~~A~~~~~~~~~-------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~~-~~~~~~~ll~ 211 (515)
.|++++|+..|++..+ .+ +....++..+...|...|++++|++.|++..+. +-.| ...++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 4455555555444432 22 234556666777777777777777777776543 1112 3456677777
Q ss_pred HHHHcCCHHHHHHHHHHhhcC--------CCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC------C-CCccHhHHH
Q 010202 212 TLCKEGKVELARSVFLELKSC--------IPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGH------G-CHPCVISYS 276 (515)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~ 276 (515)
.|...|++++|...+.+.... .+....++..+...|...|++++|...+++..+. + .+....++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 777778888877777763221 1334566777778888888888888888777653 1 122345677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC-------CCCCCH-HHHHHHHHHHHhcCC------HHHHHHHHHHHHhcCCCCCH
Q 010202 277 TIIQSYCRQYNFSKVYELLDEMQAQ-------GCPPNV-VTYTTVMSYLAKSGD------FEEAIRITEKMKIVGSKPDS 342 (515)
Q Consensus 277 ~li~~~~~~g~~~~A~~~~~~m~~~-------g~~~~~-~~~~~li~~~~~~g~------~~~a~~~~~~~~~~~~~~~~ 342 (515)
.+...|...|++++|++.+++..+. ...+.. ..+..+.......+. +..+...++.... ..+...
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 252 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVN 252 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHH
Confidence 7778888888888888888776652 112221 222222222222222 2222222222111 112234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 010202 343 RFFNCLIYTLGRASRVQEAVYVYQ 366 (515)
Q Consensus 343 ~~~~~li~~~~~~g~~~~A~~~~~ 366 (515)
.++..+...|...|++++|...|+
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~ 276 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLED 276 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 567777888888888888888887
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.2e-09 Score=100.12 Aligned_cols=243 Identities=10% Similarity=0.020 Sum_probs=138.1
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHHHcc--C-ChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHH
Q 010202 221 LARSVFLELKSCIPPNAHTFNIFIHGWCKI--N-RVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDE 297 (515)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~--g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 297 (515)
+|.+++.+..+..++....| .+ + +. + ++++|...|++. ...|...|++++|++.|++
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~-~~---~-~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~ 62 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFM-KL---F-SGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLK 62 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHH-HH---H-SCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcc-hh---c-CCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHH
Confidence 35566666554444433333 22 2 32 2 477777777765 3356678888888888887
Q ss_pred HHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhc-CCHHHHHHHHH
Q 010202 298 MQAQ----GCPPN-VVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSK-PD----SRFFNCLIYTLGRA-SRVQEAVYVYQ 366 (515)
Q Consensus 298 m~~~----g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~-g~~~~A~~~~~ 366 (515)
..+. |-.++ ..+|+.+...|.+.|++++|+..+++..+.... .+ ..+++.+...|... |++++|...|+
T Consensus 63 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~ 142 (292)
T 1qqe_A 63 AADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYE 142 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 6542 22212 457778888888888888888888877653111 11 34566667777775 77777777777
Q ss_pred hhchhCCC-CCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCH-----HhHHHHHHHHHhcCChHHHHHH
Q 010202 367 VEMPENGV-APD----TSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNV-----QTFHPLLKSCFKTGKTDECLSQ 436 (515)
Q Consensus 367 ~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-----~~~~~ll~~~~~~g~~~~A~~~ 436 (515)
...+... ..+ ..+++.+...+...|++++|+..|++..+...-.+.. ..+..+..++...|++++|+ .
T Consensus 143 -~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~-~ 220 (292)
T 1qqe_A 143 -LAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAA-R 220 (292)
T ss_dssp -HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHH-H
T ss_pred -HHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHH-H
Confidence 3333211 111 2356666777777777777777777777643111111 13455566666777777777 6
Q ss_pred HHHHHHHcCCCCCCHH------HHHHHHHHHH--hcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010202 437 LLDDMVNKHHLSLDIT------TYTLVIHGLC--RANKCEWAYLLFKEMIGHDITPRYQTCRLI 492 (515)
Q Consensus 437 ~~~~~~~~~~~~p~~~------~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 492 (515)
.+++..+ +.|+.. .+..++.++. ..+++++|+..|+++ ...++..-..+
T Consensus 221 ~~~~al~---l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~----~~l~~~~~~~~ 277 (292)
T 1qqe_A 221 TLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF----MRLDKWKITIL 277 (292)
T ss_dssp HHHGGGC---C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS----SCCCHHHHHHH
T ss_pred HHHHHHh---hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC----CccHHHHHHHH
Confidence 6666654 333311 2233444443 345566666666554 34555443333
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.18 E-value=6.4e-10 Score=101.09 Aligned_cols=228 Identities=13% Similarity=0.110 Sum_probs=156.1
Q ss_pred HhcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CC-CCCHHHHHHH
Q 010202 283 CRQYNFSKVYELLDEMQAQ-------GCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIV------GS-KPDSRFFNCL 348 (515)
Q Consensus 283 ~~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 348 (515)
...|++++|++++++..+. ..+....++..+...+...|++++|...++++.+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3567778887777776651 22224667888999999999999999999998764 21 2335678889
Q ss_pred HHHHHhcCCHHHHHHHHHhhchhC------C-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC-----CCCCCC-HH
Q 010202 349 IYTLGRASRVQEAVYVYQVEMPEN------G-VAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKL-----EHCKPN-VQ 415 (515)
Q Consensus 349 i~~~~~~g~~~~A~~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~p~-~~ 415 (515)
...|...|++++|...|. ..... . .+.....+..+...|...|++++|++.++++.+. +...|+ ..
T Consensus 92 ~~~~~~~g~~~~A~~~~~-~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCK-RALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHTTTCHHHHHHHHH-HHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhccHHHHHHHHH-HHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 999999999999999998 54432 1 1223567888999999999999999999999874 101333 55
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHHcC------CCCC-CHHHHHHHHHHHHhcCCHHH------HHHHHHHHHhCCC
Q 010202 416 TFHPLLKSCFKTGKTDECLSQLLDDMVNKH------HLSL-DITTYTLVIHGLCRANKCEW------AYLLFKEMIGHDI 482 (515)
Q Consensus 416 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~------~~~p-~~~~~~~li~~~~~~g~~~~------A~~~~~~m~~~~~ 482 (515)
++..+...+...|++++|. .++++..+.. ...+ ....|..+.......+.... +...++.... .
T Consensus 171 ~~~~la~~~~~~g~~~~A~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 247 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAE-TLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--D 247 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHH-HHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--C
T ss_pred HHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--C
Confidence 7888889999999999999 8998887631 1122 22334444444443333322 2222222210 1
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010202 483 TP-RYQTCRLILDEVKQKHMYDAAEKIEAVMKK 514 (515)
Q Consensus 483 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 514 (515)
.| ...++..+...+...|++++|.++++...+
T Consensus 248 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 248 SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12 234677777888999999999999998765
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.7e-09 Score=96.06 Aligned_cols=188 Identities=7% Similarity=-0.026 Sum_probs=124.2
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CC-CHHH
Q 010202 131 EHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVT---LNTIAKVMRRFSGAGQWEDAVRTFDELGTFGL-EK-NTET 205 (515)
Q Consensus 131 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~-~~~~ 205 (515)
+.++..+-.+...+.+.|++++|...|+++...++.+ ..++..+..+|.+.|++++|+..|++..+... .| ....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 3467777888888889999999999999998877766 78888888999999999999999999887521 11 2456
Q ss_pred HHHHHHHHHH--------cCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHH
Q 010202 206 MNLLLDTLCK--------EGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYST 277 (515)
Q Consensus 206 ~~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 277 (515)
+..+..++.. .|++++|...|+++....|.+......+... ..+... -...+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~--------------~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKI--------------RELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHH--------------HHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHH--------------HHHHHH----HHHHHHH
Confidence 6677778888 8889999999988655455554444332111 111100 0112445
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhc
Q 010202 278 IIQSYCRQYNFSKVYELLDEMQAQGCPP--NVVTYTTVMSYLAKS----------GDFEEAIRITEKMKIV 336 (515)
Q Consensus 278 li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~ 336 (515)
+...|.+.|++++|+..|+++.+..... ....+..+..+|... |++++|...++++.+.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 5566666777777777777666542111 234555555666544 6667777777776664
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=4.8e-09 Score=96.13 Aligned_cols=231 Identities=13% Similarity=0.052 Sum_probs=157.4
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc--C-CHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHH
Q 010202 186 DAVRTFDELGTFGLEKNTETMNLLLDTLCKE--G-KVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQE 262 (515)
Q Consensus 186 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~--~-~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 262 (515)
+|.+++.+..+. .++....+ .+ .+. + ++++|...|.+. ...|...|++++|...|++
T Consensus 3 ~a~~~~~~a~k~-~~~~~~~~-~~----~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~ 62 (292)
T 1qqe_A 3 DPVELLKRAEKK-GVPSSGFM-KL----FSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLK 62 (292)
T ss_dssp CHHHHHHHHHHH-SSCCCTHH-HH----HSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHH
T ss_pred cHHHHHHHHHHH-hCcCCCcc-hh----cCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHH
Confidence 466777777664 22221222 22 233 2 488888888775 4467788999999999988
Q ss_pred HHhC----CCCcc-HhHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhc-CCHHHHHHHHH
Q 010202 263 MKGH----GCHPC-VISYSTIIQSYCRQYNFSKVYELLDEMQAQ----GCPP-NVVTYTTVMSYLAKS-GDFEEAIRITE 331 (515)
Q Consensus 263 ~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~-g~~~~a~~~~~ 331 (515)
..+. |-+++ ..+|+.+...|...|++++|+..+++..+. |-.. -..++..+...|... |++++|+..|+
T Consensus 63 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~ 142 (292)
T 1qqe_A 63 AADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYE 142 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 7543 31222 568899999999999999999999987753 2111 135788888899986 99999999999
Q ss_pred HHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCH------HHHHHHHHHHHhCCCHHHHHHH
Q 010202 332 KMKIVGSK-PD----SRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDT------STFNTMITMFSHHGHHEKAFHV 400 (515)
Q Consensus 332 ~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~ 400 (515)
+..+.... .+ ..++..+...|.+.|++++|...|+ ...+....... ..|..+..++...|++++|+..
T Consensus 143 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~-~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 221 (292)
T 1qqe_A 143 LAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYS-KLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAART 221 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 98774211 11 3567888899999999999999999 55543322221 1567788889999999999999
Q ss_pred HHHHHhCCCCCCCHH------hHHHHHHHHH--hcCChHHHHHHHHHHH
Q 010202 401 LEEMNKLEHCKPNVQ------TFHPLLKSCF--KTGKTDECLSQLLDDM 441 (515)
Q Consensus 401 ~~~m~~~~~~~p~~~------~~~~ll~~~~--~~g~~~~A~~~~~~~~ 441 (515)
|++..+. .|+.. .+..++.++. ..+++++|+ ..++.+
T Consensus 222 ~~~al~l---~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~-~~~~~~ 266 (292)
T 1qqe_A 222 LQEGQSE---DPNFADSRESNFLKSLIDAVNEGDSEQLSEHC-KEFDNF 266 (292)
T ss_dssp HHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHH-HHHTTS
T ss_pred HHHHHhh---CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHH-HHhccC
Confidence 9999873 45422 2344555554 345677777 666544
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.12 E-value=3.2e-09 Score=84.27 Aligned_cols=124 Identities=14% Similarity=0.182 Sum_probs=59.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChh
Q 010202 175 MRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVD 254 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 254 (515)
...+...|++++|+++|+++.+.+ +.+...+..+...+...|++++|...++++....+.+...+..+...+...|+++
T Consensus 8 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 86 (136)
T 2fo7_A 8 GNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 86 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHH
Confidence 344444444444444444444332 2234444444444444455555555554433323334444555555555555555
Q ss_pred HHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010202 255 EAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQA 300 (515)
Q Consensus 255 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 300 (515)
+|...++++.+.. +.+...+..+...+...|++++|.+.++++..
T Consensus 87 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 87 EAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 5555555554432 22344455555555555555555555555544
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.09 E-value=4.1e-09 Score=91.24 Aligned_cols=177 Identities=10% Similarity=-0.050 Sum_probs=77.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 010202 137 YEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKE 216 (515)
Q Consensus 137 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 216 (515)
+-.....+.+.|++++|...|++....++.+..++... .... ...........+..++.+.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~-----~~~~--------------~~~~~~~~~~~lg~~~~~~ 67 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWT-----NVDK--------------NSEISSKLATELALAYKKN 67 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHH-----HSCT--------------TSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHh-----hhcc--------------hhhhhHHHHHHHHHHHHHC
Confidence 33344555566777777777776666555444444430 0000 0000001111244455555
Q ss_pred CCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCC--hhHHHHH
Q 010202 217 GKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYN--FSKVYEL 294 (515)
Q Consensus 217 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~ 294 (515)
|++++|+..|++.....|.+...+..+..++...|++++|...|++..+.. +.+..+|..+...|...|+ .+.+...
T Consensus 68 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~ 146 (208)
T 3urz_A 68 RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETD 146 (208)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 555555555555333334445555555555555555555555555554432 2234444444444443332 2223333
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010202 295 LDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKI 335 (515)
Q Consensus 295 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 335 (515)
++.... ..|....+.....++...|++++|...|++..+
T Consensus 147 ~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 147 YKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 333221 111112222233334445555555555555554
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.09 E-value=6.7e-08 Score=87.03 Aligned_cols=79 Identities=6% Similarity=-0.068 Sum_probs=34.8
Q ss_pred HHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010202 256 AQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGC-PPNVVTYTTVMSYLAKSGDFEEAIRITEKMK 334 (515)
Q Consensus 256 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 334 (515)
|...|++....+ .++..++..+..++...|++++|++++.+....|. .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444443332 22333333444444455555555555544433322 1133444444445555555555555555544
Q ss_pred h
Q 010202 335 I 335 (515)
Q Consensus 335 ~ 335 (515)
+
T Consensus 164 ~ 164 (310)
T 3mv2_B 164 N 164 (310)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.07 E-value=8.1e-09 Score=81.87 Aligned_cols=129 Identities=12% Similarity=0.111 Sum_probs=69.9
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 010202 136 IYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCK 215 (515)
Q Consensus 136 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 215 (515)
.+..+...+...|++++|..+|+++...++.+...+..+...+...|++++|...|+++.+.+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 344555555555555555555555555444455555555555555555555555555555432 2344455555555555
Q ss_pred cCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHh
Q 010202 216 EGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKG 265 (515)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 265 (515)
.|++++|.+.++++....+.+..++..+...+.+.|++++|...++++..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 55555555555554333344455555555555555555555555555543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.04 E-value=2.4e-08 Score=89.93 Aligned_cols=243 Identities=11% Similarity=0.033 Sum_probs=150.2
Q ss_pred cCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 010202 146 KVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSV 225 (515)
Q Consensus 146 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~ 225 (515)
-.|++..++.-...+... .......-+.++|...|+++... .-.|....+..+.. |...+ ++..
T Consensus 25 y~G~yq~~i~e~~~~~~~--~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~-~~~~~----a~~~ 88 (310)
T 3mv2_B 25 YTGNFVQCLQEIEKFSKV--TDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQ-FLDTK----NIEE 88 (310)
T ss_dssp TTTCHHHHTHHHHTSSCC--CCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHH-HHTTT----CCHH
T ss_pred HhhHHHHHHHHHHhcCcc--chHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHH-Hhccc----HHHH
Confidence 467777777633322211 12223333457777777765311 12344334333333 22322 6677
Q ss_pred HHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCC-CccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 010202 226 FLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGC-HPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCP 304 (515)
Q Consensus 226 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 304 (515)
++++....+++..++..+..++...|++++|++++.+....+- .-+...+..++..+.+.|+.+.|.+.+++|.+. .
T Consensus 89 l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~ 166 (310)
T 3mv2_B 89 LENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--I 166 (310)
T ss_dssp HHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--S
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--C
Confidence 7774433345566666788888888888888888888766542 135667778888888888888898888888765 4
Q ss_pred C-----CHHHHHHHHHHHH--hcC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhC---
Q 010202 305 P-----NVVTYTTVMSYLA--KSG--DFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPEN--- 372 (515)
Q Consensus 305 ~-----~~~~~~~li~~~~--~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--- 372 (515)
| +..+...+..++. ..| ++.+|..+|+++.+. .|+......++.++.+.|++++|...++ .+.+.
T Consensus 167 ~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~-~l~~~~p~ 243 (310)
T 3mv2_B 167 EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVE-LLLSDYYS 243 (310)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHH-HHHSHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHH-HHHHhccc
Confidence 5 3556666666633 334 788888888888664 3443333444447888888888888887 54331
Q ss_pred --C----CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCH
Q 010202 373 --G----VAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNV 414 (515)
Q Consensus 373 --~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~ 414 (515)
. -+.|..++-.+|......|+ +|.+++.++.+. .|+.
T Consensus 244 ~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~---~P~h 286 (310)
T 3mv2_B 244 VEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL---DHEH 286 (310)
T ss_dssp TTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT---TCCC
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh---CCCC
Confidence 0 02345566455555555676 788888888884 4554
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.6e-09 Score=109.89 Aligned_cols=202 Identities=9% Similarity=-0.045 Sum_probs=146.7
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh--------hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 010202 160 MSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELG--------TFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKS 231 (515)
Q Consensus 160 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 231 (515)
++..++.+..+... .+ ...|++++|++.+++.. +.. +.+...+..+..++...|++++|+..|++...
T Consensus 386 ~p~~~p~~~~a~~~--~a-~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 461 (681)
T 2pzi_A 386 VPLVDPTDVAASVL--QA-TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAE 461 (681)
T ss_dssp CBCCCTTSTTHHHH--HH-TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CccCCCCCcchHHh--hc-ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc
Confidence 34555544444321 22 67888888888888887 322 34567778888888888899999888888665
Q ss_pred CCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 010202 232 CIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYT 311 (515)
Q Consensus 232 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 311 (515)
..+.+...|..+..+|.+.|++++|...|++..+.. +-+...|..+..++.+.|++++ ++.|++..+.+ +.+...+.
T Consensus 462 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~ 538 (681)
T 2pzi_A 462 RVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAF 538 (681)
T ss_dssp HHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHH
T ss_pred cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHH
Confidence 566778888888888888899999999888887754 3356778888888888899888 88888887763 23667888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHhhch
Q 010202 312 TVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRAS--------RVQEAVYVYQVEMP 370 (515)
Q Consensus 312 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~~~~ 370 (515)
.+..++.+.|++++|.+.|+++.+.. +.+...+..+..++...+ ++++|.+.+. .+.
T Consensus 539 ~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~-~~~ 603 (681)
T 2pzi_A 539 GLARARSAEGDRVGAVRTLDEVPPTS-RHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVE-ALP 603 (681)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCTTS-TTHHHHHHHHHHHTC-------CCHHHHHHHHHHHH-TSC
T ss_pred HHHHHHHHcCCHHHHHHHHHhhcccC-cccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHh-hCC
Confidence 88888888999999998888887653 233556666666665533 3667777776 443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.7e-08 Score=87.20 Aligned_cols=132 Identities=15% Similarity=0.094 Sum_probs=88.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 010202 278 IIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASR 357 (515)
Q Consensus 278 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 357 (515)
+..+|.+.|++++|+..|++..+.. +-+...+..+...+...|++++|...|+++.+.. +.+..++..+...|...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 7777888888888888888877763 2367778888888888888888888888888764 4567777777777765543
Q ss_pred --HHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhH
Q 010202 358 --VQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTF 417 (515)
Q Consensus 358 --~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~ 417 (515)
.+.+...+. .... ..|....+.....++...|++++|+..|++..+ ..|+....
T Consensus 138 ~~~~~~~~~~~-~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~---l~P~~~~~ 193 (208)
T 3urz_A 138 QEKKKLETDYK-KLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL---RFPSTEAQ 193 (208)
T ss_dssp HHHHHHHHHHC----C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT---TSCCHHHH
T ss_pred HHHHHHHHHHH-HHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCHHHH
Confidence 344455554 3321 122222344455566667888888888888887 45775443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.9e-08 Score=90.50 Aligned_cols=211 Identities=12% Similarity=0.062 Sum_probs=135.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC---CCh
Q 010202 164 HIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKN---TETMNLLLDTLCKEGKVELARSVFLELKSCIP---PNA 237 (515)
Q Consensus 164 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~ 237 (515)
.+.+...+..+...+.+.|++++|+..|+++.+.. +.+ ...+..+..++...|++++|...|+++....| ...
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 34556666777778888888888888888887753 223 56677777788888888888888887443322 224
Q ss_pred hhHHHHHHHHHc--------cCChhHHHHHHHHHHhCCCCccH-hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 010202 238 HTFNIFIHGWCK--------INRVDEAQWTIQEMKGHGCHPCV-ISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVV 308 (515)
Q Consensus 238 ~~~~~li~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 308 (515)
.++..+..++.+ .|++++|...|+++.+.. |+. ..+..+. .+...... -..
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~--------------~~~~~~~~----~~~ 149 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQ--------------KIRELRAK----LAR 149 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHH--------------HHHHHHHH----HHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHH--------------HHHHHHHH----HHH
Confidence 556667777777 778888888888777642 322 2222111 11111100 011
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHhhchhCCCCC
Q 010202 309 TYTTVMSYLAKSGDFEEAIRITEKMKIVGSKP--DSRFFNCLIYTLGRA----------SRVQEAVYVYQVEMPENGVAP 376 (515)
Q Consensus 309 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~~~~~~ 376 (515)
.+..+...|.+.|++++|...|+++.+..... ....+..+..+|... |++++|...|+ ...+. .|
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~-~~~~~--~p 226 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYE-RLLQI--FP 226 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHH-HHHHH--CT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHH-HHHHH--CC
Confidence 24567788999999999999999998864221 345777788888766 89999999999 55443 24
Q ss_pred CH----HHHHHHHHHHHhCCCHHHHH
Q 010202 377 DT----STFNTMITMFSHHGHHEKAF 398 (515)
Q Consensus 377 ~~----~~~~~li~~~~~~g~~~~A~ 398 (515)
+. .....+-..+...++++++.
T Consensus 227 ~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 227 DSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp TCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred CChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 32 34455555555555555443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.6e-09 Score=88.24 Aligned_cols=144 Identities=9% Similarity=-0.049 Sum_probs=81.3
Q ss_pred HHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHH
Q 010202 141 VDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVE 220 (515)
Q Consensus 141 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 220 (515)
..++...|++++|+..+......++.....+..+...|.+.|++++|++.|++..+.. +-+..+|..+..+|...|+++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence 3444555666666666666655444444444455666666666666666666666542 335666666666666666666
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHH-HHHHHhCCCCccHhHHHHHHHHHHhcC
Q 010202 221 LARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWT-IQEMKGHGCHPCVISYSTIIQSYCRQY 286 (515)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g 286 (515)
+|+..|++..+..|.+..++..+...|.+.|++++|.+. +++..+.. +-+..+|......+...|
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 666666664444455566666666666666666554443 35554432 224445555555444444
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.01 E-value=5.2e-09 Score=87.86 Aligned_cols=161 Identities=9% Similarity=-0.056 Sum_probs=106.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHH
Q 010202 137 YEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDT-LCK 215 (515)
Q Consensus 137 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~-~~~ 215 (515)
+..+...+.+.|++++|...|++..+.++.+..++..+...+.+.|++++|+..|++..+.. |+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 44556677778888888888888777777777777777888888888888888888776643 344433322211 112
Q ss_pred cCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCc-cHhHHHHHHHHHHhcCChhHHHHH
Q 010202 216 EGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHP-CVISYSTIIQSYCRQYNFSKVYEL 294 (515)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~ 294 (515)
.+....|...+++.....|.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|...
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 2222345666666444455667777777777777777777777777777653221 244677777777777777777777
Q ss_pred HHHHH
Q 010202 295 LDEMQ 299 (515)
Q Consensus 295 ~~~m~ 299 (515)
|++..
T Consensus 167 y~~al 171 (176)
T 2r5s_A 167 YRRQL 171 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.99 E-value=3.3e-08 Score=86.67 Aligned_cols=187 Identities=10% Similarity=-0.034 Sum_probs=121.6
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CCH-HHHH
Q 010202 133 SSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVT---LNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLE-KNT-ETMN 207 (515)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~-~~~~ 207 (515)
++..+..+...+.+.|++++|+..|+++....+.+ ..++..+..+|.+.|++++|+..|+++.+.... +.. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 44566667777888899999999998887755532 467777788888899999999999888764311 111 2343
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCC
Q 010202 208 LLLDTLCK------------------EGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCH 269 (515)
Q Consensus 208 ~ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 269 (515)
.+..++.. .|+.++|...|+++....|.+..++.+..... .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~----------~~~~~~------ 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLV----------FLKDRL------ 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHH----------HHHHHH------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHH----------HHHHHH------
Confidence 34444443 45667777777775555555544443221110 000000
Q ss_pred ccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010202 270 PCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPP--NVVTYTTVMSYLAKSGDFEEAIRITEKMKIVG 337 (515)
Q Consensus 270 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 337 (515)
......+...|.+.|++++|+..|+++.+..... ....+..+..++.+.|+.++|.+.++.+...+
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0112345677888999999999999988752111 12567788889999999999999999887764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.1e-08 Score=93.29 Aligned_cols=167 Identities=10% Similarity=-0.054 Sum_probs=126.4
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH-H
Q 010202 131 EHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNL-L 209 (515)
Q Consensus 131 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-l 209 (515)
+.+...+..+...+.+.|++++|...|++....++.+..++..+...+.+.|++++|+..++++... .|+...... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 3456677778888888899999999999888888888888888888888899999999988888764 345443322 2
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCC-ccHhHHHHHHHHHHhcCCh
Q 010202 210 LDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCH-PCVISYSTIIQSYCRQYNF 288 (515)
Q Consensus 210 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~ 288 (515)
...+...++.+.|...+++.....|.+...+..+...+...|++++|...|+++.+.... .+...+..++..+...|+.
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 233556677777888887765556778888888888888888888888888888775311 1256788888888888888
Q ss_pred hHHHHHHHHHH
Q 010202 289 SKVYELLDEMQ 299 (515)
Q Consensus 289 ~~A~~~~~~m~ 299 (515)
++|...|++..
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 88888777654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.98 E-value=7.1e-09 Score=106.68 Aligned_cols=185 Identities=8% Similarity=-0.037 Sum_probs=150.2
Q ss_pred HHcCCHHHHHHHHHHhh--------cCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhc
Q 010202 214 CKEGKVELARSVFLELK--------SCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQ 285 (515)
Q Consensus 214 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 285 (515)
...|++++|++.+++.. ...+.+...+..+...|.+.|++++|...|++..+.. +.+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 67899999999999965 5567788899999999999999999999999998764 34678899999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010202 286 YNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVY 365 (515)
Q Consensus 286 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 365 (515)
|++++|++.|++..+.. +-+...+..+..++.+.|++++ .+.|++..+.. +.+...+..+..+|.+.|++++|...|
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999998863 2256788899999999999999 99999998875 567788999999999999999999999
Q ss_pred HhhchhCCCCCC-HHHHHHHHHHHHhCCC--------HHHHHHHHHHHH
Q 010202 366 QVEMPENGVAPD-TSTFNTMITMFSHHGH--------HEKAFHVLEEMN 405 (515)
Q Consensus 366 ~~~~~~~~~~~~-~~~~~~li~~~~~~g~--------~~~A~~~~~~m~ 405 (515)
+ ...+. .|+ ...|..+..++...++ +++|.+.+..+.
T Consensus 558 ~-~al~l--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 558 D-EVPPT--SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp H-TSCTT--STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred H-hhccc--CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 9 65543 455 5677777777765444 555666665553
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.95 E-value=5.5e-07 Score=81.93 Aligned_cols=225 Identities=8% Similarity=0.013 Sum_probs=103.3
Q ss_pred ChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH----HHc---CCH
Q 010202 149 QMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAG--QWEDAVRTFDELGTFGLEKNTETMNLLLDTL----CKE---GKV 219 (515)
Q Consensus 149 ~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~----~~~---~~~ 219 (515)
..++|+++++.+...++....+.+.-...+...| +++++++.++.+.... +-+..+|+.-...+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 3356666666666666655555554444555555 5666666666555532 22333333322222 222 344
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChh--HHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHH
Q 010202 220 ELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVD--EAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDE 297 (515)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 297 (515)
++++.+++.+....+.|..+|+.-.-.+.+.|.++ ++++.++++.+.. +-|...|+.-...+...+...
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~-------- 197 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLA-------- 197 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGC--------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccc--------
Confidence 44444444433334444444444444444444444 4444444444432 123334443333333333200
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHhhchhCC--C
Q 010202 298 MQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQE-AVYVYQVEMPENG--V 374 (515)
Q Consensus 298 m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~~--~ 374 (515)
+ ...++++++.++.+.... +-|...|+.+-..+.+.|+..+ +..+.. ...+.+ -
T Consensus 198 --------~-------------~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~-~~~~~~~~~ 254 (306)
T 3dra_A 198 --------T-------------DNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSL-QFVDLEKDQ 254 (306)
T ss_dssp --------C-------------HHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHH-TTEEGGGTE
T ss_pred --------h-------------hhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHH-HHHhccCCC
Confidence 0 000455555555555443 4445555555555555554332 223333 322211 1
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010202 375 APDTSTFNTMITMFSHHGHHEKAFHVLEEMNK 406 (515)
Q Consensus 375 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 406 (515)
..+...+..+...|.+.|+.++|.++++.+.+
T Consensus 255 ~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 255 VTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp ESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 23455556666666666666666666666654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.2e-08 Score=85.63 Aligned_cols=161 Identities=11% Similarity=0.026 Sum_probs=96.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHH-HHc
Q 010202 171 IAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHG-WCK 249 (515)
Q Consensus 171 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~-~~~ 249 (515)
.......+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+....| +...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHh
Confidence 3444566777777888877777766542 33566677777777777777777777777443333 44433322211 112
Q ss_pred cCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 010202 250 INRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPP-NVVTYTTVMSYLAKSGDFEEAIR 328 (515)
Q Consensus 250 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~ 328 (515)
.+...+|...+++..+.. +.+...+..+...+...|++++|++.|+++.+....+ +...+..+...+...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 223334566666665542 2245666667777777777777777777766653222 24456666667777777777776
Q ss_pred HHHHHH
Q 010202 329 ITEKMK 334 (515)
Q Consensus 329 ~~~~~~ 334 (515)
.|++..
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.4e-08 Score=100.82 Aligned_cols=163 Identities=12% Similarity=0.056 Sum_probs=116.8
Q ss_pred hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010202 112 DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTF 191 (515)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 191 (515)
++.++|...++.+... .+.+...+..+...|.+.|++++|.+.|++..+.++.+..++..+...|...|++++|++.|
T Consensus 3 g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4567788888877532 24467888888888888899999999999888888888888888888888999999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcc---CChhHHHHHHHHHHhCCC
Q 010202 192 DELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKI---NRVDEAQWTIQEMKGHGC 268 (515)
Q Consensus 192 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~~ 268 (515)
++..+.. +.+...+..+..++...|++++|.+.+++.....+.+...+..+...+... |+.++|.+.+++..+.+
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~- 158 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG- 158 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT-
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC-
Confidence 8887753 446778888888888899999999988886555567788888888888888 88888998888887764
Q ss_pred CccHhHHHHH
Q 010202 269 HPCVISYSTI 278 (515)
Q Consensus 269 ~~~~~~~~~l 278 (515)
+.+...|..+
T Consensus 159 p~~~~~~~~l 168 (568)
T 2vsy_A 159 VGAVEPFAFL 168 (568)
T ss_dssp CCCSCHHHHT
T ss_pred CcccChHHHh
Confidence 2233444433
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=6.8e-08 Score=88.11 Aligned_cols=167 Identities=13% Similarity=0.075 Sum_probs=112.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHH-
Q 010202 305 PNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNT- 383 (515)
Q Consensus 305 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~- 383 (515)
.+...+..+...+...|++++|...++++.+.. +.+...+..+...|.+.|++++|...++ ..... .|+......
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~-~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLX-TIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCGG--GCSHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHH-hCchh--hcchHHHHHH
Confidence 344556666677777788888888888777654 4456677777777888888888888887 54433 344432222
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 010202 384 MITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCR 463 (515)
Q Consensus 384 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 463 (515)
....+...++.++|+..+++..... +.+...+..+...+...|++++|+ ..+.++.+..+-..+...+..++..+..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~--P~~~~~~~~la~~l~~~g~~~~A~-~~l~~~l~~~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN--PEDAALATQLALQLHQVGRNEEAL-ELLFGHLRXDLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHH-HHHHHHHhcccccccchHHHHHHHHHHH
Confidence 2223556667777777777777754 445667777777788888888887 7777777643322235667777788888
Q ss_pred cCCHHHHHHHHHHHH
Q 010202 464 ANKCEWAYLLFKEMI 478 (515)
Q Consensus 464 ~g~~~~A~~~~~~m~ 478 (515)
.|+.++|...+++..
T Consensus 268 ~g~~~~a~~~~r~al 282 (287)
T 3qou_A 268 LGTGDALASXYRRQL 282 (287)
T ss_dssp HCTTCHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHH
Confidence 888888877777654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1.8e-07 Score=81.88 Aligned_cols=185 Identities=12% Similarity=0.063 Sum_probs=122.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChh---hHH
Q 010202 167 TLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLE-K-NTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAH---TFN 241 (515)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 241 (515)
+...+..+...+.+.|++++|+..|+++.+.... | ....+..+..++.+.|++++|+..|+++....|.+.. ++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3455566678889999999999999999875311 1 1356777889999999999999999996554444433 455
Q ss_pred HHHHHHHc------------------cCChhHHHHHHHHHHhCCCCccH-hHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 010202 242 IFIHGWCK------------------INRVDEAQWTIQEMKGHGCHPCV-ISYSTIIQSYCRQYNFSKVYELLDEMQAQG 302 (515)
Q Consensus 242 ~li~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 302 (515)
.+..++.+ .|++++|...|+++.+.. |+. ..+...... ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHHHH----
Confidence 55555543 456666666666666542 222 222111100 0000000
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHhhchhCC
Q 010202 303 CPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPD---SRFFNCLIYTLGRASRVQEAVYVYQVEMPENG 373 (515)
Q Consensus 303 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 373 (515)
......+...+.+.|++++|...|+++.+.. +.+ ...+..+..+|.+.|+.++|...++ .+...+
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~-~l~~~~ 214 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAK-IIAANS 214 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHH-HHHhhC
Confidence 0112345678889999999999999999863 222 2568888999999999999999998 766653
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.91 E-value=9.8e-07 Score=80.25 Aligned_cols=233 Identities=10% Similarity=-0.057 Sum_probs=133.5
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHhhcCCCCChhhHHHHHHHH----Hcc---CChhH
Q 010202 185 EDAVRTFDELGTFGLEKNTETMNLLLDTLCKEG--KVELARSVFLELKSCIPPNAHTFNIFIHGW----CKI---NRVDE 255 (515)
Q Consensus 185 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g~~~~ 255 (515)
++|++.++.++... +-+...|+.--.++...+ +++++++.++.+....|.+..+|+.-...+ .+. +++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 46666666666532 223444555555555555 566666666664444455555555444333 333 44555
Q ss_pred HHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010202 256 AQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKI 335 (515)
Q Consensus 256 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 335 (515)
++.+++++.+.. +.+..+|+.-.-.+.+.|.++ .+++++.++++.+
T Consensus 129 EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~---------------------------------~~~EL~~~~~~i~ 174 (306)
T 3dra_A 129 EFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHN---------------------------------DAKELSFVDKVID 174 (306)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTT---------------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccC---------------------------------hHHHHHHHHHHHH
Confidence 555555554432 234444544444444444444 0044444444444
Q ss_pred cCCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHH-HHHHHHHHHhCC
Q 010202 336 VGSKPDSRFFNCLIYTLGRASR------VQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEK-AFHVLEEMNKLE 408 (515)
Q Consensus 336 ~~~~~~~~~~~~li~~~~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~ 408 (515)
.. +-+...|+.-...+.+.+. ++++.+.++ ...... +-|...|+.....+.+.|+... +.++..++.+.+
T Consensus 175 ~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~-~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~ 251 (306)
T 3dra_A 175 TD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVK-DKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLE 251 (306)
T ss_dssp HC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHH-HHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG
T ss_pred hC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHH-HHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence 33 3334444433333333333 777888887 444332 3478899999888888888554 556777766532
Q ss_pred -CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCC-CHHHHHHHH
Q 010202 409 -HCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSL-DITTYTLVI 458 (515)
Q Consensus 409 -~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p-~~~~~~~li 458 (515)
.-..+...+..+...+.+.|+.++|+ ++++.+.++ ..| ....|+-.+
T Consensus 252 ~~~~~s~~al~~la~~~~~~~~~~~A~-~~~~~l~~~--~Dpir~~yW~~~~ 300 (306)
T 3dra_A 252 KDQVTSSFALETLAKIYTQQKKYNESR-TVYDLLKSK--YNPIRSNFWDYQI 300 (306)
T ss_dssp GTEESCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHT--TCGGGHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHH-HHHHHHHhc--cChHHHHHHHHHH
Confidence 01456788899999999999999999 999999863 334 455565443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=9.5e-09 Score=83.64 Aligned_cols=111 Identities=6% Similarity=-0.055 Sum_probs=49.3
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHH
Q 010202 178 FSGAGQWEDAVRTFDELGTFGLEK-NTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEA 256 (515)
Q Consensus 178 ~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 256 (515)
+...|++++|+..+...... .| +...+..+...|.+.|++++|++.|++.....|.+..+|..+..+|.+.|++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHH
Confidence 33444445555554444332 11 2223333444455555555555555443333344444455555555555555555
Q ss_pred HHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHH
Q 010202 257 QWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKV 291 (515)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 291 (515)
...|++..+.. +-+..+|..+...|.+.|++++|
T Consensus 85 ~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a 118 (150)
T 4ga2_A 85 VECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGR 118 (150)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHH
Confidence 55554444432 11334444444444444444433
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.87 E-value=3.2e-07 Score=79.44 Aligned_cols=161 Identities=10% Similarity=0.027 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHhhcCCCCChhhHHHHH
Q 010202 169 NTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEG----KVELARSVFLELKSCIPPNAHTFNIFI 244 (515)
Q Consensus 169 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~li 244 (515)
.++..+...|...+++++|+++|++..+.| ++..+..+...|.. + +.++|..+|++... +.+...+..|.
T Consensus 19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg 92 (212)
T 3rjv_A 19 RAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLA 92 (212)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHH
Confidence 333333444444444444444444444432 33333334444433 3 44444444444211 12334444444
Q ss_pred HHHHc----cCChhHHHHHHHHHHhCCCC-ccHhHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010202 245 HGWCK----INRVDEAQWTIQEMKGHGCH-PCVISYSTIIQSYCR----QYNFSKVYELLDEMQAQGCPPNVVTYTTVMS 315 (515)
Q Consensus 245 ~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 315 (515)
..|.. .+++++|..+|++..+.|.. .+...+..|...|.. .+++++|+++|++..+. ..+...+..+..
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~ 170 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGM 170 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHH
Confidence 44444 44555555555555444310 013444444444444 44455555555554443 112223344444
Q ss_pred HHHhc-C-----CHHHHHHHHHHHHhcC
Q 010202 316 YLAKS-G-----DFEEAIRITEKMKIVG 337 (515)
Q Consensus 316 ~~~~~-g-----~~~~a~~~~~~~~~~~ 337 (515)
.|... | ++++|...++...+.|
T Consensus 171 ~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 171 MFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 44322 1 4555555555554443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.86 E-value=3.3e-08 Score=91.19 Aligned_cols=97 Identities=9% Similarity=-0.019 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC--CC--CHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCC----H
Q 010202 380 TFNTMITMFSHHGHHEKAFHVLEEMNKLEHC--KP--NVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLD----I 451 (515)
Q Consensus 380 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~----~ 451 (515)
+++.+...|.. |++++|++.|++..+.... .+ ...++..+...+...|++++|+ ..+++..+...-.++ .
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~ 195 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAA-ASLQKEKSMYKEMENYPTCY 195 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHcCChhHHH
Confidence 34444445544 5555555555554431100 00 0234445555555556666555 555555442110111 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010202 452 TTYTLVIHGLCRANKCEWAYLLFKEMI 478 (515)
Q Consensus 452 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 478 (515)
..+..++.++...|++++|...+++..
T Consensus 196 ~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 196 KKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 234444445555566666666665554
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=6.1e-08 Score=97.88 Aligned_cols=154 Identities=8% Similarity=-0.041 Sum_probs=105.5
Q ss_pred CCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010202 147 VRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVF 226 (515)
Q Consensus 147 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 226 (515)
.|++++|.+.|++..+.++.+..++..+...+.+.|++++|++.|++..+.. +.+...+..+..+|...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4678888888888888777788888888888888888888888888887753 346777888888888888888888888
Q ss_pred HHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhc---CChhHHHHHHHHHHHCC
Q 010202 227 LELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQ---YNFSKVYELLDEMQAQG 302 (515)
Q Consensus 227 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g 302 (515)
++.....+.+...+..+..+|.+.|++++|.+.|++..+.. +.+...+..+...+... |++++|.+.+++..+.+
T Consensus 81 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 88555556677788888888888888888888888877653 33566777788888888 88888888888877653
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.86 E-value=5.1e-07 Score=78.13 Aligned_cols=173 Identities=11% Similarity=-0.012 Sum_probs=94.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 010202 291 VYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRAS----RVQEAVYVYQ 366 (515)
Q Consensus 291 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~ 366 (515)
|++.|++..+.| +..++..+...|...+++++|.+.|++..+.| +...+..|...|.. + ++++|...|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 444444444432 34444445555555555555555555555433 33444444444444 4 5566666665
Q ss_pred hhchhCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCCCC---HHhHHHHHHHHHh----cCChHHHHH
Q 010202 367 VEMPENGVAPDTSTFNTMITMFSH----HGHHEKAFHVLEEMNKLEHCKPN---VQTFHPLLKSCFK----TGKTDECLS 435 (515)
Q Consensus 367 ~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~---~~~~~~ll~~~~~----~g~~~~A~~ 435 (515)
...+. -+...+..+...|.. .+++++|+++|++..+.| |+ ...+..|...|.. .++.++|+
T Consensus 78 -~A~~~---g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~---~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~- 149 (212)
T 3rjv_A 78 -KAVEA---GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS---ESDAAVDAQMLLGLIYASGVHGPEDDVKAS- 149 (212)
T ss_dssp -HHHHT---TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST---TSHHHHHHHHHHHHHHHHTSSSSCCHHHHH-
T ss_pred -HHHHC---CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC---CCcchHHHHHHHHHHHHcCCCCCCCHHHHH-
Confidence 33332 244455555555554 566677777777666644 32 4555566666665 56677776
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCC
Q 010202 436 QLLDDMVNKHHLSLDITTYTLVIHGLCRA-N-----KCEWAYLLFKEMIGHD 481 (515)
Q Consensus 436 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~~ 481 (515)
..+++..+. ..+...+..|...|... | ++++|.+++++..+.|
T Consensus 150 ~~~~~A~~~---~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 150 EYFKGSSSL---SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHT---SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 677666652 12334455555555543 2 6777777777776654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.85 E-value=4.7e-08 Score=90.20 Aligned_cols=154 Identities=14% Similarity=0.072 Sum_probs=82.3
Q ss_pred HHHHcCCHHHHHHHHHHhhc---CCC---CChhhHHHHHHHHHccCChhHHHHHHHHHHhC----CCCc-cHhHHHHHHH
Q 010202 212 TLCKEGKVELARSVFLELKS---CIP---PNAHTFNIFIHGWCKINRVDEAQWTIQEMKGH----GCHP-CVISYSTIIQ 280 (515)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~---~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~ 280 (515)
.|...|++++|...|.+... ... .-..+|+.+...|.+.|++++|...|++..+. |-.. ...+++.+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555555555554211 000 01235556666666677777777776665432 1110 1345666666
Q ss_pred HHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCC-HHHHHHHHH
Q 010202 281 SYCRQYNFSKVYELLDEMQAQ----GCPP-NVVTYTTVMSYLAKSGDFEEAIRITEKMKIVG----SKPD-SRFFNCLIY 350 (515)
Q Consensus 281 ~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~-~~~~~~li~ 350 (515)
.|.. |++++|++.|++..+. |-.+ ...++..+...+.+.|++++|+..+++..+.. ..+. ...+..+..
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 6666 7777777777765542 1000 13456666667777777777777777665421 1111 124444555
Q ss_pred HHHhcCCHHHHHHHHH
Q 010202 351 TLGRASRVQEAVYVYQ 366 (515)
Q Consensus 351 ~~~~~g~~~~A~~~~~ 366 (515)
.+...|++++|...|+
T Consensus 204 ~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH
Confidence 5556667777776666
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.84 E-value=1.6e-05 Score=77.99 Aligned_cols=372 Identities=10% Similarity=-0.029 Sum_probs=198.2
Q ss_pred CHHHHHHHHHHhh-hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCC-hHHHHHHHHHHhc---CCCCCHHHHHH
Q 010202 99 SHYLVNKLIHRFK-DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQ-MDQMRALLEEMSK---GHIVTLNTIAK 173 (515)
Q Consensus 99 ~~~~~~~ll~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~~~~ 173 (515)
-...|...+..+- ++.+.+..+|+.+... .|++..|...++...+.+. .+....+|+.... .++.+......
T Consensus 14 aR~vyer~l~~~P~~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~ 90 (493)
T 2uy1_A 14 PSAIMEHARRLYMSKDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKE 90 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 4556666666665 5777888888887532 3577888887777766663 3556667776654 23444444433
Q ss_pred HHHHHH----hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc
Q 010202 174 VMRRFS----GAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCK 249 (515)
Q Consensus 174 li~~~~----~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 249 (515)
.+..+. .+++.+.+.++|++........-...|...... ........+.++..+.
T Consensus 91 Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~-------------------- 149 (493)
T 2uy1_A 91 YIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDT-------------------- 149 (493)
T ss_dssp HHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHH--------------------
T ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHH--------------------
Confidence 333322 235567777788777763211111222222111 1111122222222211
Q ss_pred cCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCC-------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 010202 250 INRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYN-------FSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGD 322 (515)
Q Consensus 250 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 322 (515)
.+.+..|..+++.+...--..+...|...+..-...+. .+.+..+|+++... .+.+...|...+..+.+.|+
T Consensus 150 ~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~ 228 (493)
T 2uy1_A 150 LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQ 228 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCC
Confidence 01223333333333221000123345444443222110 23456677777664 23456677777777777888
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHhhchhCC-----C---CCCHHHHHHHHHHHHhCCC
Q 010202 323 FEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEA-VYVYQVEMPENG-----V---APDTSTFNTMITMFSHHGH 393 (515)
Q Consensus 323 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~~~~~~-----~---~~~~~~~~~li~~~~~~g~ 393 (515)
.+.|..++++..+. +.+...+. .|+.....++. ..+.+ ...... . ......|...+....+.++
T Consensus 229 ~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~ 301 (493)
T 2uy1_A 229 KEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKR-KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRG 301 (493)
T ss_dssp HHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHH-HTC----------CHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHH-HHHhhccchhhhhcccccHHHHHHHHHHHHHcCC
Confidence 88888888888776 33332222 22221111111 11221 110000 0 0112456666666667778
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHh-cCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010202 394 HEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFK-TGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYL 472 (515)
Q Consensus 394 ~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 472 (515)
.+.|..+|++. +.. ..+...|......-.. .++.+.|. .+|+...+.++- ++..|...++...+.|+.+.|..
T Consensus 302 ~~~AR~i~~~A-~~~--~~~~~v~i~~A~lE~~~~~d~~~ar-~ife~al~~~~~--~~~~~~~yid~e~~~~~~~~aR~ 375 (493)
T 2uy1_A 302 LELFRKLFIEL-GNE--GVGPHVFIYCAFIEYYATGSRATPY-NIFSSGLLKHPD--STLLKEEFFLFLLRIGDEENARA 375 (493)
T ss_dssp HHHHHHHHHHH-TTS--CCCHHHHHHHHHHHHHHHCCSHHHH-HHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHh-hCC--CCChHHHHHHHHHHHHHCCChHHHH-HHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHH
Confidence 88999999888 322 2344444322222222 33688887 888888885543 34556777887888899999998
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010202 473 LFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAEKIEAVMK 513 (515)
Q Consensus 473 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 513 (515)
+|+++. .....|...+.-=...|+.+.+.++++...
T Consensus 376 l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 376 LFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 888872 245667777665577788888888777654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.82 E-value=9.9e-07 Score=80.65 Aligned_cols=163 Identities=9% Similarity=-0.004 Sum_probs=86.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC---CCC--HH
Q 010202 136 IYEMMVDILGKVRQMDQMRALLEEMSKGHIVTL------NTIAKVMRRFSGAGQWEDAVRTFDELGTFGL---EKN--TE 204 (515)
Q Consensus 136 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~~~--~~ 204 (515)
.+...+..+...|++++|.+.+++......... ..+..+...+...|++++|++.|++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344455666777777777777776655433222 1122344455566677777777666654211 111 33
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhh---cCCCCC----hhhHHHHHHHHHccCChhHHHHHHHHHHhCC----CCc-cH
Q 010202 205 TMNLLLDTLCKEGKVELARSVFLELK---SCIPPN----AHTFNIFIHGWCKINRVDEAQWTIQEMKGHG----CHP-CV 272 (515)
Q Consensus 205 ~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~ 272 (515)
+++.+...|...|++++|...|++.. ...+.+ ..+++.+...|.+.|++++|...+++..+.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 55666666666666666666666522 111111 1355556666666666666666666554321 000 13
Q ss_pred hHHHHHHHHHHhcCChhHH-HHHHHHH
Q 010202 273 ISYSTIIQSYCRQYNFSKV-YELLDEM 298 (515)
Q Consensus 273 ~~~~~li~~~~~~g~~~~A-~~~~~~m 298 (515)
.+|..+...|.+.|++++| ...+++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 4455555556666666665 4444443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.77 E-value=8.1e-07 Score=81.20 Aligned_cols=195 Identities=9% Similarity=0.027 Sum_probs=93.7
Q ss_pred CcCCHHHHHHHHHHhhhCHHHHHHHHHHhccCCCCCCCHHH---HHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHH---
Q 010202 96 IQPSHYLVNKLIHRFKDDWKSALGIFRWAGSCPGYEHSSEI---YEMMVDILGKVRQMDQMRALLEEMSKGHIVTLN--- 169 (515)
Q Consensus 96 ~~p~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--- 169 (515)
..|+..++..+...+.-+++. ++..- ...+... +...+..+...|++++|.+++++..........
T Consensus 42 ~~~~~~~l~~i~~~l~~~~~~---~~~~~-----~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~ 113 (293)
T 3u3w_A 42 VYPSMDILQGIAAKLQIPIIH---FYEVL-----IYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQ 113 (293)
T ss_dssp CCCCHHHHHHHHHHHTCCTHH---HHHTT-----TSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred CCCCHHHHHHHHHHhCcCHHH---HhCCC-----CCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHH
Confidence 457777776666665433221 11111 1112222 223356666777777777777776654433222
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CC---CC
Q 010202 170 ---TIAKVMRRFSGAGQWEDAVRTFDELGTFGLE-KN----TETMNLLLDTLCKEGKVELARSVFLELKS---CI---PP 235 (515)
Q Consensus 170 ---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~---~~ 235 (515)
.+..+...+...|++++|++.|++..+.... ++ ..+++.+...|...|++++|...|++... .. .+
T Consensus 114 ~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 193 (293)
T 3u3w_A 114 FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEE 193 (293)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchh
Confidence 1223444555556667777777666653211 12 22456666666666666666666655321 01 11
Q ss_pred -ChhhHHHHHHHHHccCChhHHHHHHHHHHhC----CCCcc-HhHHHHHHHHHHhcCC-hhHHHHHHHHH
Q 010202 236 -NAHTFNIFIHGWCKINRVDEAQWTIQEMKGH----GCHPC-VISYSTIIQSYCRQYN-FSKVYELLDEM 298 (515)
Q Consensus 236 -~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~-~~~A~~~~~~m 298 (515)
...++..+...|.+.|++++|...+++..+. +..+. ..+|..+..+|.+.|+ +++|++.+++.
T Consensus 194 ~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 194 FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 1224445555555555555555555544321 11111 3344444445555552 34555444443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.6e-07 Score=72.40 Aligned_cols=111 Identities=9% Similarity=-0.069 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 010202 134 SEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTL 213 (515)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 213 (515)
...+....+.|.+.|++++|++.|++..+.++.+..++..+..+|.+.|++++|++.|++..+.. +.+...|..+..++
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 34566667777778888888888887777777777777777777777888888888777777653 34566777777777
Q ss_pred HHcCCHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 010202 214 CKEGKVELARSVFLELKSCIPPNAHTFNIFIH 245 (515)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 245 (515)
...|++++|.+.|++..+..|.+..++..|..
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 77777777777777754444555555555443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.73 E-value=3.5e-07 Score=75.37 Aligned_cols=126 Identities=7% Similarity=-0.056 Sum_probs=63.2
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 010202 136 IYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCK 215 (515)
Q Consensus 136 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 215 (515)
.+..+...+...|++++|...|+.....++.+..++..+...+...|++++|++.|++..+.. +.+...+..+..++..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 344455555556666666666666555555555555555555555556666655555555432 2244455555555555
Q ss_pred cCCHHHHHHHHHHhhcCCCCChhhHHHH--HHHHHccCChhHHHHHHHH
Q 010202 216 EGKVELARSVFLELKSCIPPNAHTFNIF--IHGWCKINRVDEAQWTIQE 262 (515)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l--i~~~~~~g~~~~A~~~~~~ 262 (515)
.|++++|...+++.....+.+...+..+ +..+.+.|++++|...+..
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 5555555555555333233333333222 2223444444444444443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.72 E-value=2.4e-05 Score=76.80 Aligned_cols=365 Identities=8% Similarity=-0.031 Sum_probs=204.7
Q ss_pred hHHHHHHHhcCCCC--HHHHHHHhhccccCCCCcCCHHHHHHHHHHhhh---CHHHHHHHHHHhccCCCC-CCCHHHHHH
Q 010202 66 DIDVIISKVHVGSS--EDEVFQSLKQDHVCNAIQPSHYLVNKLIHRFKD---DWKSALGIFRWAGSCPGY-EHSSEIYEM 139 (515)
Q Consensus 66 ~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~g~~p~~~~~~~ll~~~~~---~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 139 (515)
.|...+.....+.. ...+|++... ..|+...|..-+.-..+ ..+....+|+.+....|. +.+...|..
T Consensus 17 vyer~l~~~P~~~~e~~~~iferal~------~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~ 90 (493)
T 2uy1_A 17 IMEHARRLYMSKDYRSLESLFGRCLK------KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKE 90 (493)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHST------TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHhc------cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 45666654432222 2336666543 34799999888876542 234456677777654453 347788999
Q ss_pred HHHHHHc----CCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 010202 140 MVDILGK----VRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCK 215 (515)
Q Consensus 140 li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 215 (515)
.+..+.. .|+++.++++|+............+-.....+.+......+..+..+..
T Consensus 91 Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~-------------------- 150 (493)
T 2uy1_A 91 YIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTL-------------------- 150 (493)
T ss_dssp HHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHH--------------------
T ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHh--------------------
Confidence 8887753 4678899999999987322333322111111111222222222222211
Q ss_pred cCCHHHHHHHHHHhhcCCC-CChhhHHHHHHHHHccC--C-----hhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCC
Q 010202 216 EGKVELARSVFLELKSCIP-PNAHTFNIFIHGWCKIN--R-----VDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYN 287 (515)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 287 (515)
+.+..|..+++.+....+ .+...|...+..-...+ - .+.+..+|+++.... +.+...|...+..+.+.|+
T Consensus 151 -~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~ 228 (493)
T 2uy1_A 151 -PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQ 228 (493)
T ss_dssp -HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTC
T ss_pred -HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCC
Confidence 123334444433221111 13344555444322211 0 234566777776642 4456677777777777888
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---------C---CCCHHHHHHHHHHHHhc
Q 010202 288 FSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVG---------S---KPDSRFFNCLIYTLGRA 355 (515)
Q Consensus 288 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---------~---~~~~~~~~~li~~~~~~ 355 (515)
.++|.+++++.... +.+...+. .|+...+.++. ++.+.+.- . .....+|...+..+.+.
T Consensus 229 ~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~ 299 (493)
T 2uy1_A 229 KEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKK 299 (493)
T ss_dssp HHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHc
Confidence 88888888887776 22222221 22222111111 22222110 0 11124566666666677
Q ss_pred CCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHH
Q 010202 356 SRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSH-HGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECL 434 (515)
Q Consensus 356 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 434 (515)
++.+.|..+|+ ..... ..+...|......-.. .++.+.|..+|+...+.. +-+...+...++-..+.|+.+.|.
T Consensus 300 ~~~~~AR~i~~-~A~~~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR 374 (493)
T 2uy1_A 300 RGLELFRKLFI-ELGNE--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENAR 374 (493)
T ss_dssp HCHHHHHHHHH-HHTTS--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCHHHHHHHHH-HhhCC--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 88999999998 55222 2244444432222222 336999999999998853 223444556677677889999987
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010202 435 SQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIG 479 (515)
Q Consensus 435 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 479 (515)
.+|+... .....|...+..-...|+.+.+.++++++.+
T Consensus 375 -~l~er~~------k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 375 -ALFKRLE------KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp -HHHHHSC------CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred -HHHHHHH------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888762 2577899888888888999999998888764
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.72 E-value=8.7e-07 Score=76.56 Aligned_cols=123 Identities=11% Similarity=-0.008 Sum_probs=72.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChh
Q 010202 175 MRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVD 254 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 254 (515)
...+...|++++|++.|++.. .|+...+..+...+...|++++|...|++.....+.+...+..+..+|.+.|+++
T Consensus 13 g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 13 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHH
Confidence 445555666666666665542 3455566666666666666666666666643334455566666666666666666
Q ss_pred HHHHHHHHHHhCCCC--------------c-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 010202 255 EAQWTIQEMKGHGCH--------------P-CVISYSTIIQSYCRQYNFSKVYELLDEMQAQ 301 (515)
Q Consensus 255 ~A~~~~~~~~~~~~~--------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 301 (515)
+|...|++..+.... | ....|..+..++...|++++|.+.|++..+.
T Consensus 89 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 666666666553210 1 1245666666677777777777777766654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.3e-06 Score=75.36 Aligned_cols=128 Identities=7% Similarity=-0.087 Sum_probs=102.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 010202 136 IYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCK 215 (515)
Q Consensus 136 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 215 (515)
.+..+...+.+.|++++|...|++... ++..++..+...|.+.|++++|++.|++..+.. +.+...+..+..++..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQD---PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSS---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 455667778888999999998887742 366778888888889999999999998887754 4567788888888999
Q ss_pred cCCHHHHHHHHHHhhcCCCCCh----------------hhHHHHHHHHHccCChhHHHHHHHHHHhCC
Q 010202 216 EGKVELARSVFLELKSCIPPNA----------------HTFNIFIHGWCKINRVDEAQWTIQEMKGHG 267 (515)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 267 (515)
.|++++|...|++.....+.+. .++..+..+|.+.|++++|...|++..+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999988555444443 788889999999999999999999988764
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.70 E-value=8.1e-07 Score=78.93 Aligned_cols=197 Identities=7% Similarity=-0.082 Sum_probs=136.1
Q ss_pred cCCChHHHHHHHHHHhcCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHhhCCCCCC----------------
Q 010202 146 KVRQMDQMRALLEEMSKGHIVTLNTIAKV-------MRRFSGAGQWEDAVRTFDELGTFGLEKN---------------- 202 (515)
Q Consensus 146 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~~~---------------- 202 (515)
..++...|.+.|.++.+.++....++..+ ...+.+.++..+++..+..-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 57899999999999999888888888665 3445555555555555554443 1221
Q ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCcc--HhH
Q 010202 203 ------TETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPC--VIS 274 (515)
Q Consensus 203 ------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~ 274 (515)
......+...+...|++++|.++|+.+....|.+. ....+...+.+.+++++|+..|+...... .|. ...
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 22334566778888999999999988665444344 66777778888999999999998655432 111 236
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 010202 275 YSTIIQSYCRQYNFSKVYELLDEMQAQGCPPN--VVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCL 348 (515)
Q Consensus 275 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 348 (515)
+..+..++...|++++|++.|++.......|. .........++.+.|+.++|...|+++.... |+...+..|
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~aL 247 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHH
Confidence 77788888889999999999988875433243 3355666777788899999999999888763 444444433
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.70 E-value=5.4e-07 Score=69.97 Aligned_cols=113 Identities=12% Similarity=0.106 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 010202 134 SEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTL 213 (515)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 213 (515)
...+..+...+.+.|++++|.+.|+++...++.+..++..+...+.+.|++++|+..|+++.+.. +.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 45566666666667777777777766666555556666666666666666666666666665542 33455555666666
Q ss_pred HHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 010202 214 CKEGKVELARSVFLELKSCIPPNAHTFNIFIHGW 247 (515)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 247 (515)
...|++++|...++++....+.+...+..+...+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 6666666666666654333344444444444443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1.3e-06 Score=79.95 Aligned_cols=162 Identities=11% Similarity=0.072 Sum_probs=86.3
Q ss_pred HHHHHccCChhHHHHHHHHHHhCC-CCccH----hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 010202 244 IHGWCKINRVDEAQWTIQEMKGHG-CHPCV----ISYSTIIQSYCRQYNFSKVYELLDEMQAQGCP-PN----VVTYTTV 313 (515)
Q Consensus 244 i~~~~~~g~~~~A~~~~~~~~~~~-~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~l 313 (515)
+..+...|++++|...+++..+.. ..|+. ..+..+...+...+++++|++.+++..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 455666666777776666665532 11221 12233455555566777777777776653211 12 2246666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc-----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhhch---hCCCCCC-HHHHHH
Q 010202 314 MSYLAKSGDFEEAIRITEKMKIV-----GSKP-DSRFFNCLIYTLGRASRVQEAVYVYQVEMP---ENGVAPD-TSTFNT 383 (515)
Q Consensus 314 i~~~~~~g~~~~a~~~~~~~~~~-----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~-~~~~~~ 383 (515)
...|...|++++|...++++.+. +..+ ...++..+...|.+.|++++|...++..+. ..+..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 66777777777777777666531 1111 122455566666666666666666652111 1111111 445666
Q ss_pred HHHHHHhCCC-HHHHHHHHHHHH
Q 010202 384 MITMFSHHGH-HEKAFHVLEEMN 405 (515)
Q Consensus 384 li~~~~~~g~-~~~A~~~~~~m~ 405 (515)
+..+|.+.|+ +++|.+.+++..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHH
Confidence 6666666663 466666666554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.2e-05 Score=73.99 Aligned_cols=171 Identities=11% Similarity=0.003 Sum_probs=96.4
Q ss_pred CCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc-C-CHHHHH
Q 010202 147 VRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAG-QWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKE-G-KVELAR 223 (515)
Q Consensus 147 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~-~-~~~~a~ 223 (515)
.+..++|+++++.+...++....+.+.--..+...| .+++++++++.+.... +-+..+|+.-..++... + +.++++
T Consensus 67 ~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 344456777777777766666666555445555555 4677777777766643 33555565555555554 5 566666
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHHHccCChh--------HHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCC-------h
Q 010202 224 SVFLELKSCIPPNAHTFNIFIHGWCKINRVD--------EAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYN-------F 288 (515)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~ 288 (515)
++++.+....+.|..+|+.-.-.+.+.|.++ ++++.++++.+.. +-|...|+.....+.+.++ +
T Consensus 146 ~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 146 EYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHH
Confidence 6666655555666666665555555555444 6666666666543 2355566665555555554 4
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 010202 289 SKVYELLDEMQAQGCPPNVVTYTTVMSYLAKS 320 (515)
Q Consensus 289 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 320 (515)
+++++.++++.... +-|...|+.+-..+.+.
T Consensus 225 ~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~ 255 (349)
T 3q7a_A 225 QDELIYILKSIHLI-PHNVSAWNYLRGFLKHF 255 (349)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 55555555555442 22444454444433333
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.70 E-value=9.4e-07 Score=80.79 Aligned_cols=169 Identities=9% Similarity=0.029 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHhhchhCC---CCCC--
Q 010202 308 VTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDS-----RFFNCLIYTLGRASRVQEAVYVYQVEMPENG---VAPD-- 377 (515)
Q Consensus 308 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~-- 377 (515)
..+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...++ ...... ..+.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~-~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELK-KLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH-HHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHH-HHHHHHhcCCchHHH
Confidence 34455666777788888888888777664322111 123334455666777888877776 332211 1111
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCC-----HHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCC---
Q 010202 378 TSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPN-----VQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSL--- 449 (515)
Q Consensus 378 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p--- 449 (515)
..+|+.+...|...|++++|+..|++..+.....|+ ..++..+...|...|++++|+ .++++..+...-..
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al-~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESL-YQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHH-HHHHHHHHHHHhcCcHH
Confidence 346777777777778888888888777621001122 146667777777777777777 77777766321000
Q ss_pred -CHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 010202 450 -DITTYTLVIHGLCRANKCEWA-YLLFKEMI 478 (515)
Q Consensus 450 -~~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 478 (515)
-..+|..+...|.+.|++++| ...+++..
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 045666777777777777777 66666654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.69 E-value=4e-07 Score=71.80 Aligned_cols=120 Identities=7% Similarity=-0.097 Sum_probs=81.5
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 010202 131 EHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLL 210 (515)
Q Consensus 131 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 210 (515)
+.+...+..+...+.+.|++++|...|++....++.+..++..+...+...|++++|++.|++..+.. +.+...+..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 44566777777777788888888888887777777677777777777777777777777777776643 33566666677
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccC
Q 010202 211 DTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKIN 251 (515)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 251 (515)
.++...|++++|.+.|++.....+.+...+..+..++.+.|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 77777777777777777644333444555555555554443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=3.6e-07 Score=71.72 Aligned_cols=119 Identities=11% Similarity=0.006 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 010202 133 SSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDT 212 (515)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 212 (515)
+...+..+...+...|++++|...|++....++.+..++..+...+...|++++|++.+++..+.. +.+...+..+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 344555666666666677777776666666555556666666666666666666666666665542 2345555556666
Q ss_pred HHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCC
Q 010202 213 LCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINR 252 (515)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 252 (515)
+...|++++|...+++.....+.+...+..+..++.+.|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 6666666666666665433334455555555555555544
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.66 E-value=2.6e-07 Score=83.84 Aligned_cols=94 Identities=9% Similarity=-0.080 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 010202 134 SEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTL 213 (515)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 213 (515)
...+..+...+.+.|++++|...|++....++.+...+..+...|.+.|++++|++.+++..+.. +.+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 44455555555555555556555555555555555555555555555555555555555555432 22444455555555
Q ss_pred HHcCCHHHHHHHHHH
Q 010202 214 CKEGKVELARSVFLE 228 (515)
Q Consensus 214 ~~~~~~~~a~~~~~~ 228 (515)
...|++++|...|.+
T Consensus 83 ~~~g~~~~A~~~~~~ 97 (281)
T 2c2l_A 83 LEMESYDEAIANLQR 97 (281)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH
Confidence 555555555555544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.65 E-value=9.3e-07 Score=72.77 Aligned_cols=126 Identities=6% Similarity=-0.070 Sum_probs=70.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcc
Q 010202 171 IAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKI 250 (515)
Q Consensus 171 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 250 (515)
+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++.....+.+...+..+..++.+.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 3444556666666666666666665542 335556666666666666666666666664443445555666666666666
Q ss_pred CChhHHHHHHHHHHhCCCCccHhHHHH--HHHHHHhcCChhHHHHHHHHH
Q 010202 251 NRVDEAQWTIQEMKGHGCHPCVISYST--IIQSYCRQYNFSKVYELLDEM 298 (515)
Q Consensus 251 g~~~~A~~~~~~~~~~~~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m 298 (515)
|++++|...|++..+.. +.+...+.. +...+...|++++|++.+...
T Consensus 95 ~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 95 GKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 66666666666655442 112333322 222244555555655555543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=5.7e-05 Score=69.45 Aligned_cols=222 Identities=10% Similarity=-0.001 Sum_probs=155.1
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcc-C-ChhH
Q 010202 179 SGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEG-KVELARSVFLELKSCIPPNAHTFNIFIHGWCKI-N-RVDE 255 (515)
Q Consensus 179 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~ 255 (515)
.+.+..++|+++++.+.... +-+..+|+.--..+...| .+++++..++.+....|.+..+|+.-...+.+. + ++++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHH
Confidence 33455578999999998864 346667787777788888 599999999998777888999999888888777 7 8999
Q ss_pred HHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChh--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----
Q 010202 256 AQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFS--------KVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGD----- 322 (515)
Q Consensus 256 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----- 322 (515)
++++++++.+.. +.|..+|+.-.-.+.+.|.++ ++++.++++.+.... |..+|+.....+.+.++
T Consensus 144 EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 144 EIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccch
Confidence 999999998875 457888887766666666666 899999998887544 77888888777777775
Q ss_pred --HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHhhchhCC-----CC
Q 010202 323 --FEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRV--------------------QEAVYVYQVEMPENG-----VA 375 (515)
Q Consensus 323 --~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~~~~~~~-----~~ 375 (515)
++++++.++++.... +-|...|+-+-..+.+.|+. .+...... .+...+ -.
T Consensus 222 ~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 299 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGF-PMPSDPLPEDTPL 299 (349)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------C-CCCC-CCCSSCCS
T ss_pred HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHH-HHHhcccccccCC
Confidence 678888888887764 56777777766666655543 12222222 222211 02
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010202 376 PDTSTFNTMITMFSHHGHHEKAFHVLEEMN 405 (515)
Q Consensus 376 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 405 (515)
++...+..++..|...|+.++|.++++.+.
T Consensus 300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 345555555666666666666666666654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.63 E-value=6.4e-08 Score=78.41 Aligned_cols=103 Identities=12% Similarity=-0.029 Sum_probs=62.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHH
Q 010202 163 GHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNI 242 (515)
Q Consensus 163 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 242 (515)
.++.+..++..+...+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..|++.....|.+...|..
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 344445555556666666666666666666666542 3355666666666666666666666666644444555666666
Q ss_pred HHHHHHccCChhHHHHHHHHHHhC
Q 010202 243 FIHGWCKINRVDEAQWTIQEMKGH 266 (515)
Q Consensus 243 li~~~~~~g~~~~A~~~~~~~~~~ 266 (515)
+..+|.+.|++++|...|++..+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666666666666666666666554
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.61 E-value=5.9e-07 Score=70.35 Aligned_cols=96 Identities=10% Similarity=-0.039 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc
Q 010202 170 TIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCK 249 (515)
Q Consensus 170 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 249 (515)
.+......|.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|+..|++.....+.+...|..+..+|..
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 33344555555555555555555555432 23455555555555555555555555555333334445555555555555
Q ss_pred cCChhHHHHHHHHHHhC
Q 010202 250 INRVDEAQWTIQEMKGH 266 (515)
Q Consensus 250 ~g~~~~A~~~~~~~~~~ 266 (515)
.|++++|.+.|++..+.
T Consensus 94 ~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 94 MREWSKAQRAYEDALQV 110 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 55555555555555443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.60 E-value=2e-07 Score=78.02 Aligned_cols=121 Identities=7% Similarity=0.015 Sum_probs=75.3
Q ss_pred HcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHHcCCH--HH
Q 010202 145 GKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDT-LCKEGKV--EL 221 (515)
Q Consensus 145 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~-~~~~~~~--~~ 221 (515)
...|++++|...|+.....++.+..++..+...|...|++++|+..|++..+.. +.+...+..+..+ +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 345666777777777666666666666666777777777777777777766543 2355556666666 5566666 67
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 010202 222 ARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGH 266 (515)
Q Consensus 222 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 266 (515)
|...+++.....|.+...+..+...|...|++++|...|++..+.
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777766644444555666666666666667777777766666654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.60 E-value=4.3e-07 Score=82.44 Aligned_cols=97 Identities=10% Similarity=-0.067 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 010202 168 LNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGW 247 (515)
Q Consensus 168 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 247 (515)
...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...+++.....+.+...+..+..+|
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3444555666666677777777666666542 225566666666666666666666666665544555566666666666
Q ss_pred HccCChhHHHHHHHHHHh
Q 010202 248 CKINRVDEAQWTIQEMKG 265 (515)
Q Consensus 248 ~~~g~~~~A~~~~~~~~~ 265 (515)
...|++++|...|++..+
T Consensus 83 ~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666666554
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=2.2e-07 Score=75.24 Aligned_cols=106 Identities=13% Similarity=0.004 Sum_probs=51.4
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChh
Q 010202 159 EMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAH 238 (515)
Q Consensus 159 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 238 (515)
.+...++.+...+..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|...|++.....|.+..
T Consensus 12 ~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 90 (148)
T 2vgx_A 12 MLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPR 90 (148)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH
T ss_pred HHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch
Confidence 3333333344444444455555555555555555554432 224444455555555555555555555553333344444
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHh
Q 010202 239 TFNIFIHGWCKINRVDEAQWTIQEMKG 265 (515)
Q Consensus 239 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 265 (515)
.+..+..+|...|++++|...|++..+
T Consensus 91 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 91 FPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555555555555443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.58 E-value=7.4e-07 Score=76.24 Aligned_cols=131 Identities=8% Similarity=-0.035 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhc------CCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC----CCCc--c
Q 010202 204 ETMNLLLDTLCKEGKVELARSVFLELKS------CIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGH----GCHP--C 271 (515)
Q Consensus 204 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~--~ 271 (515)
..+..+...+...|++++|...+++... ..+....++..+...|...|++++|...+++..+. +-.+ .
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 3444444444444444444444444211 01112234444555555555555555555544321 1011 1
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010202 272 VISYSTIIQSYCRQYNFSKVYELLDEMQAQ----GCPP-NVVTYTTVMSYLAKSGDFEEAIRITEKMK 334 (515)
Q Consensus 272 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 334 (515)
...+..+...+...|++++|.+.+++.... +... -..++..+...+...|++++|.+.+++..
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 233455555555556666666555554421 1000 01223445555555666666665555544
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.58 E-value=2.1e-06 Score=66.54 Aligned_cols=95 Identities=16% Similarity=0.136 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHh
Q 010202 205 TMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCR 284 (515)
Q Consensus 205 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 284 (515)
.+..+...+...|++++|.+.++++....+.+..++..+...+.+.|++++|...++++.+.. +.+..++..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHH
Confidence 333344444444444444444444322223334444444444444444444444444444332 2233444444455555
Q ss_pred cCChhHHHHHHHHHHH
Q 010202 285 QYNFSKVYELLDEMQA 300 (515)
Q Consensus 285 ~g~~~~A~~~~~~m~~ 300 (515)
.|++++|.+.++++.+
T Consensus 90 ~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 90 QGDYDEAIEYYQKALE 105 (125)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHH
Confidence 5555555555554444
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.5e-06 Score=68.37 Aligned_cols=98 Identities=11% Similarity=-0.012 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 010202 167 TLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHG 246 (515)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 246 (515)
+..++..+...+.+.|++++|++.|++..+.. +.+...+..+...+...|++++|...+++.....+.+...+..+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34444444555555555555555555554432 22444455555555555555555555555333333444455555555
Q ss_pred HHccCChhHHHHHHHHHHh
Q 010202 247 WCKINRVDEAQWTIQEMKG 265 (515)
Q Consensus 247 ~~~~g~~~~A~~~~~~~~~ 265 (515)
+.+.|++++|...|++..+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555555443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.55 E-value=8e-08 Score=89.74 Aligned_cols=142 Identities=8% Similarity=-0.040 Sum_probs=74.6
Q ss_pred ChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--------------HHHHHHHHHHHH
Q 010202 149 QMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKN--------------TETMNLLLDTLC 214 (515)
Q Consensus 149 ~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--------------~~~~~~ll~~~~ 214 (515)
++++|...|+.....++.....+..+...|.+.|++++|+..|++..+...... ...|..+..+|.
T Consensus 128 ~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 207 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL 207 (336)
T ss_dssp EEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444433332222233344555566667777777777777777665421111 345555555555
Q ss_pred HcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHH
Q 010202 215 KEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKV 291 (515)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 291 (515)
+.|++++|+..+++.....|.+...+..+..+|...|++++|...|++..+.. +.+...+..+..++.+.|+.++|
T Consensus 208 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 208 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 55666666665555433344455555555555555555555555555555432 22344555555555555555555
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.55 E-value=9.4e-06 Score=72.11 Aligned_cols=137 Identities=6% Similarity=-0.078 Sum_probs=87.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCC--HHhHHHHHH
Q 010202 345 FNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPN--VQTFHPLLK 422 (515)
Q Consensus 345 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~ll~ 422 (515)
.-.+...+...|++++|.++|. .+... .|+......+...+.+.+++++|+..|+...... .|. ...+..+..
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~-~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~--d~~~~~~a~~~LG~ 179 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALE-AAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP--DKFLAGAAGVAHGV 179 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHT-SSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHH-HHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC--CcccHHHHHHHHHH
Confidence 3445566777788888888887 55443 2444355555566777888888888887554421 121 235666777
Q ss_pred HHHhcCChHHHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 010202 423 SCFKTGKTDECLSQLLDDMVNKHHLSLD--ITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCR 490 (515)
Q Consensus 423 ~~~~~g~~~~A~~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 490 (515)
++...|++++|+ ..|++... ....|. .........++.+.|+.++|...|+++.. ..|+...+.
T Consensus 180 al~~LG~~~eAl-~~l~~a~~-g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a--~~P~~~~~~ 245 (282)
T 4f3v_A 180 AAANLALFTEAE-RRLTEAND-SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT--THPEPKVAA 245 (282)
T ss_dssp HHHHTTCHHHHH-HHHHHHHT-STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSCCHHHHH
T ss_pred HHHHCCCHHHHH-HHHHHHhc-CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcHHHHH
Confidence 778888888887 77777764 222243 33455566777788888888888888876 445533333
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=2.6e-06 Score=66.67 Aligned_cols=116 Identities=10% Similarity=-0.042 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc
Q 010202 170 TIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCK 249 (515)
Q Consensus 170 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 249 (515)
.+..+...+...|++++|++.|++..+.. +.+...+..+...+...|++++|...++......+.+...+..+...+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH
Confidence 33444555555566666666665555432 22445555555555555555555555555333334445555555555555
Q ss_pred cCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCC
Q 010202 250 INRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYN 287 (515)
Q Consensus 250 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 287 (515)
.|++++|...|++..+.. +.+...+..+..++...|+
T Consensus 93 ~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 555555555555554432 1233444444444444443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=3.9e-06 Score=64.23 Aligned_cols=108 Identities=10% Similarity=-0.060 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 010202 135 EIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLC 214 (515)
Q Consensus 135 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 214 (515)
..+..+...+...|++++|...|+.....++.+...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 4455556666666666666666666665555555566556666666666666666666655542 224555555555666
Q ss_pred HcCCHHHHHHHHHHhhcCCCCChhhHHHH
Q 010202 215 KEGKVELARSVFLELKSCIPPNAHTFNIF 243 (515)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 243 (515)
..|++++|...++......+.+...+..+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 112 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGL 112 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 66666666666655443334444444333
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.3e-06 Score=81.52 Aligned_cols=131 Identities=13% Similarity=0.030 Sum_probs=115.1
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 010202 133 SSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVT---------------LNTIAKVMRRFSGAGQWEDAVRTFDELGTF 197 (515)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 197 (515)
+...+..+...|.+.|++++|...|++....++.+ ..++..+..+|.+.|++++|+..|++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45678889999999999999999999998877765 688889999999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHH-HHHHHHHH
Q 010202 198 GLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEA-QWTIQEMK 264 (515)
Q Consensus 198 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~~ 264 (515)
. +.+...+..+..+|...|++++|+..|++.....|.+..++..+..++.+.|+.++| ...++.|.
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 457889999999999999999999999997666677889999999999999999988 45666664
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.52 E-value=7e-07 Score=74.70 Aligned_cols=121 Identities=10% Similarity=0.073 Sum_probs=85.6
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHH-HHccCCh--hH
Q 010202 179 SGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHG-WCKINRV--DE 255 (515)
Q Consensus 179 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~~ 255 (515)
...|++++|+..+++..+.. +.+...+..+...|...|++++|...|++.....+.+...+..+..+ +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 44677777888887776653 44677777788888888888888888887554445667777777777 6677887 88
Q ss_pred HHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 010202 256 AQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQ 301 (515)
Q Consensus 256 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 301 (515)
|...|++..+.. +.+...|..+...+...|++++|+..|++..+.
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 888888877653 334667777777888888888888888887765
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.1e-06 Score=75.04 Aligned_cols=120 Identities=16% Similarity=0.055 Sum_probs=58.0
Q ss_pred HcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC----CCC-ccHhHHHHHHHHHHhcCChh
Q 010202 215 KEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGH----GCH-PCVISYSTIIQSYCRQYNFS 289 (515)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~ 289 (515)
..|++++|.+.++.+.........++..+...+...|++++|...+++.... +.. ....++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455666665433332222234455666666666666666666666655431 111 12334555555566666666
Q ss_pred HHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010202 290 KVYELLDEMQAQ----GCPP--NVVTYTTVMSYLAKSGDFEEAIRITEKMK 334 (515)
Q Consensus 290 ~A~~~~~~m~~~----g~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 334 (515)
+|++.+++..+. +-.+ ...++..+...+...|++++|...+++..
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 666665554431 1011 12334444555555555555555555544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=9.9e-08 Score=81.69 Aligned_cols=143 Identities=8% Similarity=-0.034 Sum_probs=62.7
Q ss_pred HcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC--------------HHHHHHH
Q 010202 145 GKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLE-KN--------------TETMNLL 209 (515)
Q Consensus 145 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~--------------~~~~~~l 209 (515)
...|+++.+.+.++.-....+.....+..+...+.+.|++++|++.|++..+.... |+ ...+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 94 (198)
T ss_dssp -------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 33444444444443222222223334444556666667777777777666653211 10 1344444
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCCh
Q 010202 210 LDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNF 288 (515)
Q Consensus 210 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 288 (515)
..+|...|++++|+..++......+.+...+..+..+|...|++++|...|++..+.. +.+...+..+..++...++.
T Consensus 95 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 95 ATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEA 172 (198)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHH
Confidence 4455555555555555554333333444445555555555555555555555544332 11333344444444333333
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.7e-06 Score=67.71 Aligned_cols=95 Identities=6% Similarity=-0.125 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 010202 134 SEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTL 213 (515)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 213 (515)
...+..+...+.+.|++++|...|++..+.++.+..++..+..+|.+.|++++|+..|++..+.. +.+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 34455566666667777777777776666666666666666666666677777776666666543 23455666666666
Q ss_pred HHcCCHHHHHHHHHHh
Q 010202 214 CKEGKVELARSVFLEL 229 (515)
Q Consensus 214 ~~~~~~~~a~~~~~~~ 229 (515)
...|++++|...|++.
T Consensus 83 ~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 83 IAVKEYASALETLDAA 98 (126)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHH
Confidence 6666666666666653
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.48 E-value=8.8e-07 Score=71.66 Aligned_cols=98 Identities=6% Similarity=-0.020 Sum_probs=87.5
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 010202 133 SSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDT 212 (515)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 212 (515)
+...+..+...+.+.|++++|...|+.....+|.+...+..+..+|...|++++|++.|++..+.. +.++..|..+..+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 556788888999999999999999999999999999999999999999999999999999998864 3467888899999
Q ss_pred HHHcCCHHHHHHHHHHhhc
Q 010202 213 LCKEGKVELARSVFLELKS 231 (515)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~ 231 (515)
|...|++++|...|++...
T Consensus 114 ~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.44 E-value=1.2e-06 Score=70.21 Aligned_cols=95 Identities=9% Similarity=-0.003 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 010202 134 SEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTL 213 (515)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 213 (515)
...+..+...+.+.|++++|...|+.....++.+...+..+..+|.+.|++++|+..|++..+.. +.++..+..+..++
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 34455556666677777777777777776666666666666777777777777777777766643 33555666666677
Q ss_pred HHcCCHHHHHHHHHHh
Q 010202 214 CKEGKVELARSVFLEL 229 (515)
Q Consensus 214 ~~~~~~~~a~~~~~~~ 229 (515)
...|++++|...|+..
T Consensus 97 ~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSA 112 (142)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 7777777777777663
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.43 E-value=1.4e-06 Score=69.78 Aligned_cols=102 Identities=15% Similarity=0.017 Sum_probs=60.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHH
Q 010202 163 GHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNI 242 (515)
Q Consensus 163 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 242 (515)
.++.+...+..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|...|++.....|.+...+..
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 91 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH 91 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 333344445555566666666666666666665542 3355556666666666666666666666644444555556666
Q ss_pred HHHHHHccCChhHHHHHHHHHHh
Q 010202 243 FIHGWCKINRVDEAQWTIQEMKG 265 (515)
Q Consensus 243 li~~~~~~g~~~~A~~~~~~~~~ 265 (515)
+..+|...|++++|...|++..+
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666666554
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=3.1e-06 Score=68.33 Aligned_cols=99 Identities=8% Similarity=0.000 Sum_probs=87.1
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 010202 132 HSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLD 211 (515)
Q Consensus 132 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 211 (515)
.+...+..+...+.+.|++++|...|+.....++.+...+..+..+|...|++++|++.|++..... +.+...+..+..
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 3566777888899999999999999999999899999999999999999999999999999998764 446788888999
Q ss_pred HHHHcCCHHHHHHHHHHhhc
Q 010202 212 TLCKEGKVELARSVFLELKS 231 (515)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~ 231 (515)
+|...|++++|...|+....
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999998543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=3.5e-06 Score=71.91 Aligned_cols=131 Identities=13% Similarity=0.025 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 010202 135 EIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTL----------------NTIAKVMRRFSGAGQWEDAVRTFDELGTFG 198 (515)
Q Consensus 135 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 198 (515)
..+..+...+.+.|++++|...|++.....+.+. .++..+..+|.+.|++++|+..+++..+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 4566777888899999999999999887655443 777888899999999999999999998863
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHH-HHHHHHHhC
Q 010202 199 LEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQ-WTIQEMKGH 266 (515)
Q Consensus 199 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~ 266 (515)
+.+...+..+..++...|++++|...|++.....|.+..++..+..++...++.+++. ..+..+...
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4578888999999999999999999999966556777888888888888887777766 555555443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.40 E-value=1e-05 Score=64.88 Aligned_cols=113 Identities=12% Similarity=-0.065 Sum_probs=73.6
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 010202 132 HSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVT---LNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNL 208 (515)
Q Consensus 132 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 208 (515)
.+...+..+...+.+.|++++|.+.|++..+.++.+ ..++..+...|...|++++|++.+++..+.. +.+...+..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 456677777777777777777777777777666554 5666666777777777777777777766542 235566666
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 010202 209 LLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIH 245 (515)
Q Consensus 209 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 245 (515)
+..++...|++++|...|++.....+.+...+..+..
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 6667777777777777776644433444444444433
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.39 E-value=8e-06 Score=63.89 Aligned_cols=109 Identities=14% Similarity=0.139 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCC-CC----HH
Q 010202 378 TSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLS-LD----IT 452 (515)
Q Consensus 378 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-p~----~~ 452 (515)
...+..+...+.+.|++++|++.|++.++.. +-+...|..+..+|...|++++|+ ..+++..+..+-. ++ ..
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~-~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECV-QFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHH-HHHHHHHHhCcccchhhHHHHH
Confidence 3456677788888888888888888888754 344667778888888888888888 7777776521111 11 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010202 453 TYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRL 491 (515)
Q Consensus 453 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 491 (515)
+|..+..++...|++++|++.|++.++ ..||+.+...
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~ 121 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKK 121 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHH
Confidence 566777888888999999999888875 4566655443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.38 E-value=3.3e-06 Score=64.00 Aligned_cols=92 Identities=14% Similarity=0.012 Sum_probs=45.2
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--CHHHHHHHHHHH
Q 010202 136 IYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEK--NTETMNLLLDTL 213 (515)
Q Consensus 136 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~ll~~~ 213 (515)
.+..+...+.+.|++++|...|++..+.++.+..++..+...+...|++++|++.|++..+.. +. +...+..+..++
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHH
Confidence 344445555555555555555555554444444444444555555555555555555544432 12 344444444444
Q ss_pred HHc-CCHHHHHHHHHH
Q 010202 214 CKE-GKVELARSVFLE 228 (515)
Q Consensus 214 ~~~-~~~~~a~~~~~~ 228 (515)
... |++++|.+.+..
T Consensus 87 ~~~~~~~~~A~~~~~~ 102 (112)
T 2kck_A 87 RYIEGKEVEAEIAEAR 102 (112)
T ss_dssp TTCSSCSHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHH
Confidence 444 444444444444
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.37 E-value=4.1e-06 Score=66.41 Aligned_cols=96 Identities=9% Similarity=-0.074 Sum_probs=66.2
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 010202 132 HSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLD 211 (515)
Q Consensus 132 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 211 (515)
.++..+..+...+.+.|++++|...|+.....++.+..++..+..++...|++++|+..|++..+.. +.+...+..+..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 3566677777777777777777777777766666666677667777777777777777777766643 335666666666
Q ss_pred HHHHcCCHHHHHHHHHH
Q 010202 212 TLCKEGKVELARSVFLE 228 (515)
Q Consensus 212 ~~~~~~~~~~a~~~~~~ 228 (515)
++...|++++|...|.+
T Consensus 86 ~~~~~~~~~~A~~~~~~ 102 (137)
T 3q49_B 86 CQLEMESYDEAIANLQR 102 (137)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHH
Confidence 77777777777777666
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=1.9e-05 Score=60.19 Aligned_cols=95 Identities=17% Similarity=0.122 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcc
Q 010202 171 IAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKI 250 (515)
Q Consensus 171 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 250 (515)
+..+...+...|++++|++.|++..+.. +.+...+..+...+...|++++|...+++.....+.+...+..+..++.+.
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3444555556666666666666655432 224555555555555556666666555553333344455555555555555
Q ss_pred CChhHHHHHHHHHHhC
Q 010202 251 NRVDEAQWTIQEMKGH 266 (515)
Q Consensus 251 g~~~~A~~~~~~~~~~ 266 (515)
|++++|...+++..+.
T Consensus 86 ~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKH 101 (118)
T ss_dssp TCHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHc
Confidence 5555555555555543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.36 E-value=6e-06 Score=67.94 Aligned_cols=97 Identities=10% Similarity=-0.008 Sum_probs=73.0
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 010202 133 SSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDT 212 (515)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 212 (515)
+...+..+...|.+.|++++|++.|++....++.+...+..+..+|.+.|++++|+..|++..+.. +.+...|..+..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 456677777777888888888888888877777777777777778888888888888887777653 3356777777777
Q ss_pred HHHcCCHHHHHHHHHHhh
Q 010202 213 LCKEGKVELARSVFLELK 230 (515)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~ 230 (515)
|...|++++|...|++..
T Consensus 89 ~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHH
Confidence 777788888877777743
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.1e-05 Score=62.86 Aligned_cols=87 Identities=14% Similarity=0.105 Sum_probs=33.4
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhH
Q 010202 211 DTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSK 290 (515)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 290 (515)
..+.+.|++++|...|++.....|.+...|..+..+|.+.|++++|...+++..+.. +.+...|..+..++...|++++
T Consensus 12 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~ 90 (126)
T 3upv_A 12 KEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYAS 90 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhCHHH
Confidence 333334444444444433222223333334444444444444444444444433322 1123333334444444444444
Q ss_pred HHHHHHHH
Q 010202 291 VYELLDEM 298 (515)
Q Consensus 291 A~~~~~~m 298 (515)
|++.|++.
T Consensus 91 A~~~~~~a 98 (126)
T 3upv_A 91 ALETLDAA 98 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.29 E-value=7.5e-06 Score=61.94 Aligned_cols=95 Identities=13% Similarity=0.047 Sum_probs=56.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC--ChhhHHHHHHHHH
Q 010202 171 IAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPP--NAHTFNIFIHGWC 248 (515)
Q Consensus 171 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~li~~~~ 248 (515)
+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...+++.....+. +..++..+..++.
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence 3344556666666666666666665542 234555566666666666666666666664443444 5556666666666
Q ss_pred cc-CChhHHHHHHHHHHhC
Q 010202 249 KI-NRVDEAQWTIQEMKGH 266 (515)
Q Consensus 249 ~~-g~~~~A~~~~~~~~~~ 266 (515)
+. |++++|.+.+++....
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TCSSCSHHHHHHHHHHGGG
T ss_pred HHhCCHHHHHHHHHHHhhc
Confidence 66 6666666666666554
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00035 Score=63.86 Aligned_cols=97 Identities=5% Similarity=-0.069 Sum_probs=46.8
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHccC--ChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCC-hhHHHHHHH
Q 010202 220 ELARSVFLELKSCIPPNAHTFNIFIHGWCKIN--RVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYN-FSKVYELLD 296 (515)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~ 296 (515)
++++.+++.+....|.+..+|+.-.-.+.+.| ++++++.+++++.+.. +.|..+|+.-.-.+...|. ++++++.++
T Consensus 91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 34444444433334445555555444444444 2455555555555443 2345555554444445554 355555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHH
Q 010202 297 EMQAQGCPPNVVTYTTVMSYLA 318 (515)
Q Consensus 297 ~m~~~g~~~~~~~~~~li~~~~ 318 (515)
.+.+..+. |..+|+.....+.
T Consensus 170 ~~I~~~p~-N~SAW~~R~~ll~ 190 (331)
T 3dss_A 170 SLITRNFS-NYSSWHYRSCLLP 190 (331)
T ss_dssp HHHHHCSC-CHHHHHHHHHHHH
T ss_pred HHHHHCCC-CHHHHHHHHHHHH
Confidence 55554322 4444544444333
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00029 Score=64.38 Aligned_cols=181 Identities=9% Similarity=0.005 Sum_probs=113.1
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHHHccCC----------hhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcC--Ch
Q 010202 221 LARSVFLELKSCIPPNAHTFNIFIHGWCKINR----------VDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQY--NF 288 (515)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~ 288 (515)
+|+.+++.+....|.+..+|+.--..+...+. +++++.+++.+.... +.+..+|+.-.-.+...+ .+
T Consensus 48 eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 48 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccH
Confidence 56666666555555555566554444433332 577888888887654 457788887777777777 47
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc------------
Q 010202 289 SKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGD-FEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRA------------ 355 (515)
Q Consensus 289 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~------------ 355 (515)
++++++++.+.+.... |-.+|+.-.-.+...|. ++++++.++.+.+.. +.|...|+.....+.+.
T Consensus 127 ~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~ 204 (331)
T 3dss_A 127 ARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRL 204 (331)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CC
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhcccccccccc
Confidence 8899999988886533 77778777777777787 588888888888765 56667776665555443
Q ss_pred --CCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHHh
Q 010202 356 --SRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHH-----------GHHEKAFHVLEEMNK 406 (515)
Q Consensus 356 --g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~ 406 (515)
+.++++.+.+...+... +-|...|+-+-..+.+. +.++++++.++++.+
T Consensus 205 ~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle 266 (331)
T 3dss_A 205 PENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE 266 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh
Confidence 33556666665233221 22455555443333333 234555555555555
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.3e-05 Score=62.60 Aligned_cols=94 Identities=13% Similarity=0.054 Sum_probs=41.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCC--Ccc----HhHHHHHHH
Q 010202 207 NLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGC--HPC----VISYSTIIQ 280 (515)
Q Consensus 207 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~~li~ 280 (515)
..+...+.+.|++++|+..|++.....|.+...|+.+..+|.+.|++++|+..+++..+... .++ ..+|..+..
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~ 91 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGN 91 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 33444444445555555555443333334444445555555555555555555544433210 000 123444444
Q ss_pred HHHhcCChhHHHHHHHHHHH
Q 010202 281 SYCRQYNFSKVYELLDEMQA 300 (515)
Q Consensus 281 ~~~~~g~~~~A~~~~~~m~~ 300 (515)
++...|++++|++.|++...
T Consensus 92 ~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 92 AFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 44455555555555554443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.27 E-value=7.2e-06 Score=64.08 Aligned_cols=94 Identities=10% Similarity=0.065 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCC----HHHHHH
Q 010202 135 EIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGL--EKN----TETMNL 208 (515)
Q Consensus 135 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~----~~~~~~ 208 (515)
..+..+...+...|++++|...|++....++.+..++..+...+...|++++|+..+++..+... .++ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34555666666666666666666666665555566666666666666666666666666554321 111 444445
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 010202 209 LLDTLCKEGKVELARSVFLE 228 (515)
Q Consensus 209 ll~~~~~~~~~~~a~~~~~~ 228 (515)
+..++...|++++|.+.|+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~ 104 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNK 104 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHH
Confidence 55555555555555555555
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.25 E-value=1.4e-05 Score=62.30 Aligned_cols=113 Identities=10% Similarity=0.138 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCC-CCC----HH
Q 010202 378 TSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHL-SLD----IT 452 (515)
Q Consensus 378 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-~p~----~~ 452 (515)
...|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|+ ..+++..+...- .++ ..
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCR-ELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHH-HHHHHHHhhccccchhHHHHHH
Confidence 3456677777888888888888888887754 445667777778888888888888 777777663221 122 56
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010202 453 TYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDE 495 (515)
Q Consensus 453 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 495 (515)
.|..+...+...|++++|.+.+++..+ ..|+...+..+...
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~l~~~ 121 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCHHHHHHHHHH
Confidence 777788888888888888888888876 34666555544443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.25 E-value=3.7e-05 Score=61.52 Aligned_cols=100 Identities=10% Similarity=0.034 Sum_probs=71.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhH
Q 010202 165 IVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKN----TETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTF 240 (515)
Q Consensus 165 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 240 (515)
+.+...+..+...+...|++++|++.|++..+. .|+ ...+..+..++...|++++|...+++.....+.+...+
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 345666677777888888888888888887764 454 56667777777777888888777777544445566777
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhC
Q 010202 241 NIFIHGWCKINRVDEAQWTIQEMKGH 266 (515)
Q Consensus 241 ~~li~~~~~~g~~~~A~~~~~~~~~~ 266 (515)
..+..++...|++++|...|++..+.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77777777777777777777777654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.24 E-value=2.3e-05 Score=61.94 Aligned_cols=97 Identities=10% Similarity=-0.064 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 010202 167 TLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHG 246 (515)
Q Consensus 167 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 246 (515)
+...+..+...+...|++++|+..|....+.. +.+...+..+..++...|++++|...++......+.+...+..+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 34444444455555555555555555544432 22344444445555555555555555544333333344444444444
Q ss_pred HHccCChhHHHHHHHHHH
Q 010202 247 WCKINRVDEAQWTIQEMK 264 (515)
Q Consensus 247 ~~~~g~~~~A~~~~~~~~ 264 (515)
|...|++++|...|++..
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 545555555544444443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.7e-05 Score=60.72 Aligned_cols=91 Identities=13% Similarity=0.021 Sum_probs=51.2
Q ss_pred HHHHHHcCCChHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHH
Q 010202 140 MVDILGKVRQMDQMRALLEEMSKGHIVTL---NTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKN---TETMNLLLDTL 213 (515)
Q Consensus 140 li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~ll~~~ 213 (515)
+...+.+.|++++|...|+.+...++.+. .++..+..++.+.|++++|+..|++..+.. +.+ ...+..+..++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHH
Confidence 44455566666666666666655444333 455555666666666666666666665532 112 44455555566
Q ss_pred HHcCCHHHHHHHHHHhhc
Q 010202 214 CKEGKVELARSVFLELKS 231 (515)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~ 231 (515)
...|++++|...|+.+..
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666665433
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=1.1e-05 Score=62.48 Aligned_cols=91 Identities=8% Similarity=-0.057 Sum_probs=56.7
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 010202 138 EMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEG 217 (515)
Q Consensus 138 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 217 (515)
..+...+.+.|++++|...|+...+.++.+..++..+..++...|++++|+..|++..+.. +.+...+..+..++...|
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 3445556666666666666666666666666666666666666666666666666666542 224555666666666666
Q ss_pred CHHHHHHHHHHh
Q 010202 218 KVELARSVFLEL 229 (515)
Q Consensus 218 ~~~~a~~~~~~~ 229 (515)
++++|...+++.
T Consensus 100 ~~~~A~~~~~~a 111 (121)
T 1hxi_A 100 NANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 666666666653
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.20 E-value=3.6e-05 Score=63.16 Aligned_cols=91 Identities=16% Similarity=0.148 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 010202 274 SYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLG 353 (515)
Q Consensus 274 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 353 (515)
.|..+...+.+.|++++|++.|++..+.. +.+...+..+..+|.+.|++++|+..+++..+.. +.+...+..+..+|.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34444444444444444444444444331 1133444444444444444444444444444432 223344444444444
Q ss_pred hcCCHHHHHHHHH
Q 010202 354 RASRVQEAVYVYQ 366 (515)
Q Consensus 354 ~~g~~~~A~~~~~ 366 (515)
..|++++|...|+
T Consensus 91 ~~g~~~~A~~~~~ 103 (164)
T 3sz7_A 91 DMADYKGAKEAYE 103 (164)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HccCHHHHHHHHH
Confidence 4444444444444
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00021 Score=69.05 Aligned_cols=200 Identities=8% Similarity=0.017 Sum_probs=120.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCC
Q 010202 279 IQSYCRQYNFSKVYELLDEMQAQGCPPN----------------VVTYTTVMSYLAKSGDFEEAIRITEKMKIVGS-KPD 341 (515)
Q Consensus 279 i~~~~~~g~~~~A~~~~~~m~~~g~~~~----------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~ 341 (515)
...+.+.|++++|++.|..+.+...... ..++..+...|...|++++|.+.+..+.+.-- .++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4556778899999999988887532211 12366777888888888888888877665211 122
Q ss_pred HH----HHHHHHHHHHhcCCHHHHHHHHHhhch---hCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-C--
Q 010202 342 SR----FFNCLIYTLGRASRVQEAVYVYQVEMP---ENGVAPD-TSTFNTMITMFSHHGHHEKAFHVLEEMNKLEH-C-- 410 (515)
Q Consensus 342 ~~----~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~-- 410 (515)
.. +.+.+-..+...|+.+.|..++..... ..+..+. ..++..+...|...|++++|..+++++...-. .
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 21 222233334456777888777762221 1222222 44666777777778888888888877765310 1
Q ss_pred CCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010202 411 KPN-VQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLD-----ITTYTLVIHGLCRANKCEWAYLLFKEMIG 479 (515)
Q Consensus 411 ~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 479 (515)
.|. ...+..++..|...|++++|. .++++......-.++ ...+..+...+...|++++|...+.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSK-ASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHH-HHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 111 335666777777788888877 777666542111111 23455556666677778887777777653
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.15 E-value=9e-05 Score=71.61 Aligned_cols=192 Identities=7% Similarity=-0.037 Sum_probs=117.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CCCC
Q 010202 175 MRRFSGAGQWEDAVRTFDELGTFGLEKN----------------TETMNLLLDTLCKEGKVELARSVFLELKS---CIPP 235 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g~~~~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~ 235 (515)
.+.+.+.|++++|++.|..+.+...... ...+..+...|...|++++|.+.+..+.. ....
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 5677888999999999988887532211 12356677788888888888888877432 2211
Q ss_pred C---hhhHHHHHHHHHccCChhHHHHHHHHHHh----CCCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHC--CC--
Q 010202 236 N---AHTFNIFIHGWCKINRVDEAQWTIQEMKG----HGCHP-CVISYSTIIQSYCRQYNFSKVYELLDEMQAQ--GC-- 303 (515)
Q Consensus 236 ~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~-- 303 (515)
. ..+.+.+...+...|++++|..++++... .+..+ -..++..+...|...|++++|..++++.... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 12233344445556777788777776543 12111 2345667777777788888888777776542 11
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 010202 304 PP-NVVTYTTVMSYLAKSGDFEEAIRITEKMKIV--GSKPD----SRFFNCLIYTLGRASRVQEAVYVYQ 366 (515)
Q Consensus 304 ~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~ 366 (515)
.+ ...++..++..|...|++++|..++++.... ....+ ...+..+...+...|++++|...|.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~ 240 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFF 240 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 11 1345666777777777777777777776542 11111 2334445555566677777777666
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.15 E-value=2e-05 Score=64.10 Aligned_cols=133 Identities=9% Similarity=-0.031 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCC----HHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCC----H
Q 010202 380 TFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPN----VQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLD----I 451 (515)
Q Consensus 380 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~----~ 451 (515)
++..+...+...|++++|+..+++..+.....++ ..++..+...+...|++++|. ..+++..+...-.++ .
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETAS-EYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHhCCcHHHH
Confidence 4555566666666777766666666542100011 124555666666777777776 666665442111111 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010202 452 TTYTLVIHGLCRANKCEWAYLLFKEMIGH----DITP-RYQTCRLILDEVKQKHMYDAAEKIEAVMK 513 (515)
Q Consensus 452 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 513 (515)
..+..+...+...|++++|.+.+++..+. +..+ ...++..+...+...|++++|.+.++...
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34556666777777777777777766532 1111 12345555556677777777777776654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.13 E-value=8e-06 Score=80.02 Aligned_cols=121 Identities=7% Similarity=-0.061 Sum_probs=92.9
Q ss_pred HHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 010202 140 MVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKV 219 (515)
Q Consensus 140 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 219 (515)
+...+.+.|++++|.+.|++..+.++.+..++..+..+|.+.|++++|++.+++..+.. +.+...+..+..+|...|++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 34456678899999999998888888888888888889999999999999999888863 34677888888888899999
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHH--HHccCChhHHHHHHH
Q 010202 220 ELARSVFLELKSCIPPNAHTFNIFIHG--WCKINRVDEAQWTIQ 261 (515)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 261 (515)
++|.+.|++..+..+.+...+..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999988554445556666666666 777888888888887
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.11 E-value=3.4e-05 Score=75.21 Aligned_cols=88 Identities=8% Similarity=-0.123 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHH
Q 010202 204 ETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYC 283 (515)
Q Consensus 204 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 283 (515)
..|..+..+|.+.|++++|+..+++.....+.+...|..+..+|...|++++|...|++..+.. +-+...+..+..++.
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 4444555555555555555555555333334455555555555555555555555555555442 223344555555555
Q ss_pred hcCChhHHH
Q 010202 284 RQYNFSKVY 292 (515)
Q Consensus 284 ~~g~~~~A~ 292 (515)
+.++.+++.
T Consensus 397 ~~~~~~~a~ 405 (457)
T 1kt0_A 397 KAKEHNERD 405 (457)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.10 E-value=2.4e-06 Score=83.32 Aligned_cols=96 Identities=13% Similarity=0.046 Sum_probs=67.2
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010202 237 AHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSY 316 (515)
Q Consensus 237 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 316 (515)
..+|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|+..|++..+.. +-+..++..+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4567778888888888888888888877654 3356778888888888888888888888887653 2245667777777
Q ss_pred HHhcCCHHHHH-HHHHHHH
Q 010202 317 LAKSGDFEEAI-RITEKMK 334 (515)
Q Consensus 317 ~~~~g~~~~a~-~~~~~~~ 334 (515)
+.+.++.+++. ..+..|.
T Consensus 395 ~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 395 QKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 77777777665 3444443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.10 E-value=2.5e-05 Score=60.38 Aligned_cols=90 Identities=11% Similarity=0.001 Sum_probs=47.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChh
Q 010202 175 MRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVD 254 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 254 (515)
...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|+..|++.....|.+...+..+..+|.+.|+++
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~ 102 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNAN 102 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 445555555555555555555432 2245555555555555555555555555543333444555555555555555555
Q ss_pred HHHHHHHHHHh
Q 010202 255 EAQWTIQEMKG 265 (515)
Q Consensus 255 ~A~~~~~~~~~ 265 (515)
+|...|++..+
T Consensus 103 ~A~~~~~~al~ 113 (121)
T 1hxi_A 103 AALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 55555555544
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.09 E-value=2.5e-05 Score=73.61 Aligned_cols=90 Identities=11% Similarity=0.016 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHH
Q 010202 202 NTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQS 281 (515)
Q Consensus 202 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 281 (515)
+...|..+..+|.+.|++++|+..+++.....+.+...+..+..+|...|++++|...|++..+.. +.+...+..+...
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 344555666666666666666666666444445556666666666666666666666666665542 2244555555555
Q ss_pred HHhcCChhHHH
Q 010202 282 YCRQYNFSKVY 292 (515)
Q Consensus 282 ~~~~g~~~~A~ 292 (515)
+...++.+++.
T Consensus 351 ~~~~~~~~~a~ 361 (370)
T 1ihg_A 351 KQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.04 E-value=8.4e-06 Score=62.69 Aligned_cols=80 Identities=11% Similarity=0.013 Sum_probs=35.3
Q ss_pred CChHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010202 148 RQMDQMRALLEEMSKG---HIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARS 224 (515)
Q Consensus 148 g~~~~A~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~ 224 (515)
|++++|+..|++..+. ++.+..++..+...|...|++++|++.|++..+.. +-+...+..+..++...|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 4444455555544443 23333444444444445555555555554444432 2234444444444444455554444
Q ss_pred HHHH
Q 010202 225 VFLE 228 (515)
Q Consensus 225 ~~~~ 228 (515)
.+++
T Consensus 83 ~~~~ 86 (117)
T 3k9i_A 83 LLLK 86 (117)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.03 E-value=2.7e-05 Score=63.82 Aligned_cols=94 Identities=12% Similarity=0.006 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcC------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010202 134 SEIYEMMVDILGKVRQMDQMRALLEEMSKG------------------HIVTLNTIAKVMRRFSGAGQWEDAVRTFDELG 195 (515)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 195 (515)
...+......+.+.|++++|...|+..... ++....++..+..+|.+.|++++|+..+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345566667777778888887777776543 22222334444444444444444444444444
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010202 196 TFGLEKNTETMNLLLDTLCKEGKVELARSVFLE 228 (515)
Q Consensus 196 ~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 228 (515)
+.. +.+...|..+..+|...|++++|...|+.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~ 122 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKL 122 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 432 22344444444444444444444444444
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00014 Score=56.47 Aligned_cols=92 Identities=20% Similarity=0.178 Sum_probs=53.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC---hhhHHHHHHHH
Q 010202 174 VMRRFSGAGQWEDAVRTFDELGTFGLEKNT---ETMNLLLDTLCKEGKVELARSVFLELKSCIPPN---AHTFNIFIHGW 247 (515)
Q Consensus 174 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~ 247 (515)
+...+.+.|++++|++.|+...+.. +.+. ..+..+..++...|++++|...|+.+....|.+ ..++..+..++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3455666677777777776666532 1122 355556666666666666666666644333333 44555666666
Q ss_pred HccCChhHHHHHHHHHHhC
Q 010202 248 CKINRVDEAQWTIQEMKGH 266 (515)
Q Consensus 248 ~~~g~~~~A~~~~~~~~~~ 266 (515)
.+.|++++|...|+++.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 6666666666666666554
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.02 E-value=3.4e-05 Score=62.64 Aligned_cols=134 Identities=10% Similarity=-0.018 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhchhCC-CCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCC----H
Q 010202 344 FFNCLIYTLGRASRVQEAVYVYQVEMPENG-VAPD----TSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPN----V 414 (515)
Q Consensus 344 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~ 414 (515)
++..+...|...|++++|...++ ...+.. -.++ ...+..+...+...|++++|.+.+++..+.....++ .
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~-~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHE-QRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHH-HHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 34444455555555555555555 221110 0011 135666677777788888888877776552100111 3
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010202 415 QTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLD----ITTYTLVIHGLCRANKCEWAYLLFKEMIG 479 (515)
Q Consensus 415 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 479 (515)
..+..+...+...|++++|. ..+++..+...-..+ ...+..+...+...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~-~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAI-DYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 45666777788888888888 777776642111111 34567788888899999999999988764
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.02 E-value=1.5e-05 Score=78.15 Aligned_cols=120 Identities=7% Similarity=-0.068 Sum_probs=94.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChh
Q 010202 175 MRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVD 254 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 254 (515)
...+.+.|++++|++.|++..+.. +.+...+..+..+|.+.|++++|++.+++..+..+.+..++..+..+|.+.|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 345677899999999999998753 4468889999999999999999999999976667778889999999999999999
Q ss_pred HHHHHHHHHHhCCCCccHhHHHHHHHH--HHhcCChhHHHHHHH
Q 010202 255 EAQWTIQEMKGHGCHPCVISYSTIIQS--YCRQYNFSKVYELLD 296 (515)
Q Consensus 255 ~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 296 (515)
+|.+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999987753 2244556666555 788899999999887
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.93 E-value=8.9e-05 Score=69.85 Aligned_cols=137 Identities=9% Similarity=0.043 Sum_probs=91.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHcc
Q 010202 171 IAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKI 250 (515)
Q Consensus 171 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 250 (515)
+..+...+.+.|++++|++.|++..+. .++ ...... .+......+.+..+|..+..+|.+.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~----------~~~~~~-------~~~~~~~~~~~~~~~~nla~~~~~~ 286 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRY--VEG----------SRAAAE-------DADGAKLQPVALSCVLNIGACKLKM 286 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--HHH----------HHHHSC-------HHHHGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHH--hhc----------CccccC-------hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444566777777777777777766542 000 000001 1111112233567788888888899
Q ss_pred CChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010202 251 NRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIR 328 (515)
Q Consensus 251 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 328 (515)
|++++|+..+++..+.. +.+...|..+..+|...|++++|++.|++..+.. +.+...+..+...+...++.+++.+
T Consensus 287 g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 287 SDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888764 3357788888888889999999999998887763 2256677777777777777776654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.93 E-value=2.1e-05 Score=60.39 Aligned_cols=86 Identities=13% Similarity=0.076 Sum_probs=48.5
Q ss_pred cCChhHHHHHHHHHHhCC--CCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010202 250 INRVDEAQWTIQEMKGHG--CHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAI 327 (515)
Q Consensus 250 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 327 (515)
.|++++|+..|++..+.+ -+.+...|..+...|...|++++|++.|++..+.. +-+..++..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 456666666666666542 12234556666666666666666666666666543 224555666666666666666666
Q ss_pred HHHHHHHhc
Q 010202 328 RITEKMKIV 336 (515)
Q Consensus 328 ~~~~~~~~~ 336 (515)
..+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666553
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.90 E-value=3.7e-05 Score=71.59 Aligned_cols=149 Identities=10% Similarity=-0.033 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 010202 134 SEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTL 213 (515)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 213 (515)
...+..+...+.+.|++++|...|++.....+.+. .+...++.+++...+. ...|..+..+|
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--------~~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH--------HHTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch--------hhhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 34566777888888899999988888765443221 1122233333332221 12566677777
Q ss_pred HHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHH-HHhcCChhHHH
Q 010202 214 CKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQS-YCRQYNFSKVY 292 (515)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~ 292 (515)
.+.|++++|+..+++.....+.+...|..+..+|...|++++|...|++..+.. +-+...+..+... ....+..+++.
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888887777554456677777778888888888888888887776542 1233444444444 23345566777
Q ss_pred HHHHHHHHC
Q 010202 293 ELLDEMQAQ 301 (515)
Q Consensus 293 ~~~~~m~~~ 301 (515)
+.|..|...
T Consensus 320 ~~~~~~l~~ 328 (338)
T 2if4_A 320 EMYKGIFKG 328 (338)
T ss_dssp ---------
T ss_pred HHHHHhhCC
Confidence 777777654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00018 Score=58.77 Aligned_cols=99 Identities=11% Similarity=0.063 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-------CC----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 010202 168 LNTIAKVMRRFSGAGQWEDAVRTFDELGTF-------GL----------EKNTETMNLLLDTLCKEGKVELARSVFLELK 230 (515)
Q Consensus 168 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~----------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 230 (515)
...+......+.+.|++++|+..|.+..+. .- +.+...|..+..+|.+.|++++|+..++...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344555678888899999999998887653 00 1112344445555555555555555555533
Q ss_pred cCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 010202 231 SCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGH 266 (515)
Q Consensus 231 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 266 (515)
...|.+...|..+..+|...|++++|...|++....
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 333444555555555555555555555555555443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.85 E-value=2e-05 Score=59.57 Aligned_cols=65 Identities=8% Similarity=-0.015 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 010202 133 SSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTF 197 (515)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 197 (515)
+...+..+...+.+.|++++|.+.|++....++.+..++..+..++.+.|++++|++.|++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34566677777777777888877777777777777777777777777777777777777777764
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0012 Score=65.76 Aligned_cols=172 Identities=8% Similarity=-0.006 Sum_probs=112.1
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHhhcCCCCChhhHHHHHHHHHccC--C
Q 010202 185 EDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGK----------VELARSVFLELKSCIPPNAHTFNIFIHGWCKIN--R 252 (515)
Q Consensus 185 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~ 252 (515)
++|++.++++.... +-+...|+.--.++...|+ ++++.+.++.+....|.+..+|+.-.-.+.+.+ +
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence 45566666666542 2234445544444444444 677777777755556677777777777777777 5
Q ss_pred hhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------
Q 010202 253 VDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQY-NFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKS----------- 320 (515)
Q Consensus 253 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~----------- 320 (515)
++++++.++++.+.. +.+..+|+.-...+.+.| .++++++.++++.+.... |..+|+.....+.+.
T Consensus 125 ~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 125 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccccc
Confidence 577777777777664 346677777766667777 677777777777765433 666776666665553
Q ss_pred ---CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 010202 321 ---GDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQE 360 (515)
Q Consensus 321 ---g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 360 (515)
+.++++.+.+++..... +-+...|.-+-..+.+.++.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 45688888888887764 5566777777766766666433
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0013 Score=65.68 Aligned_cols=171 Identities=8% Similarity=-0.085 Sum_probs=121.2
Q ss_pred ChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-
Q 010202 149 QMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQ----------WEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEG- 217 (515)
Q Consensus 149 ~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~- 217 (515)
..++|.+.++.+...++....+++.-...+...|+ ++++++.++.+.+.. +-+..+|..-.-++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 34677888888887777777666655555555555 788888888887754 446677777777777777
Q ss_pred -CHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccC-ChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhc----------
Q 010202 218 -KVELARSVFLELKSCIPPNAHTFNIFIHGWCKIN-RVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQ---------- 285 (515)
Q Consensus 218 -~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---------- 285 (515)
+++++.+.++++.+..+.|..+|+.-...+.+.| .++++++.++++.+.. +-|..+|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccccc
Confidence 6688888888866666777888887777777777 7788888888877765 34677777776666553
Q ss_pred ----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 010202 286 ----YNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGD 322 (515)
Q Consensus 286 ----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 322 (515)
+.++++++.+++..... +-|..+|...-..+.+.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred cccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 45688888888887753 3356777776666666665
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00021 Score=69.53 Aligned_cols=97 Identities=11% Similarity=-0.015 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhc----C----CCCChhhHHHHHHHHHccCChhHHHHHHHHHHh-----CCC-C
Q 010202 204 ETMNLLLDTLCKEGKVELARSVFLELKS----C----IPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKG-----HGC-H 269 (515)
Q Consensus 204 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~-~ 269 (515)
.+++.|..+|...|++++|+.++++... . .|....+++.|...|...|++++|+.++++..+ .|- .
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H 431 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH 431 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3455566666666666666666555211 1 112234566666667777777777666665542 121 1
Q ss_pred c-cHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010202 270 P-CVISYSTIIQSYCRQYNFSKVYELLDEMQA 300 (515)
Q Consensus 270 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 300 (515)
| ...+.+.+-.++...+.+++|..+|..+.+
T Consensus 432 p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 432 PITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 122344455555566666666666666554
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.74 E-value=6.2e-05 Score=70.08 Aligned_cols=147 Identities=8% Similarity=-0.027 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHH
Q 010202 169 NTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWC 248 (515)
Q Consensus 169 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 248 (515)
..+..+...+.+.|++++|+..|++..+. .|+... +...++.+++...+ . ...|..+..+|.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~------~~~~~nla~~~~ 241 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H------HHHHHHHHHHHH
Confidence 33455677888899999999999998764 344332 12233333333222 1 237888999999
Q ss_pred ccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHH-HHhcCCHHHH
Q 010202 249 KINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPP-NVVTYTTVMSY-LAKSGDFEEA 326 (515)
Q Consensus 249 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~-~~~~g~~~~a 326 (515)
+.|++++|...+++..+.. +.+...|..+..+|...|++++|++.|++..+. .| +...+..+... ....+..+.+
T Consensus 242 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998764 346788999999999999999999999998765 33 34445555444 2345677888
Q ss_pred HHHHHHHHhc
Q 010202 327 IRITEKMKIV 336 (515)
Q Consensus 327 ~~~~~~~~~~ 336 (515)
.++|..+...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8899988764
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0013 Score=51.97 Aligned_cols=88 Identities=6% Similarity=-0.131 Sum_probs=38.0
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010202 243 FIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCR----QYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLA 318 (515)
Q Consensus 243 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 318 (515)
|...|...+.+++|.++|++..+.| +...+..|...|.. .+++++|+++|++..+.| +...+..+...|.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~ 104 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQY 104 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence 3333333344444444444444433 33344444444443 344444444444444432 3334444444444
Q ss_pred h----cCCHHHHHHHHHHHHhc
Q 010202 319 K----SGDFEEAIRITEKMKIV 336 (515)
Q Consensus 319 ~----~g~~~~a~~~~~~~~~~ 336 (515)
. .+++++|.+.+++..+.
T Consensus 105 ~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 105 AGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHC
Confidence 4 44444444444444443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00047 Score=55.21 Aligned_cols=55 Identities=13% Similarity=0.018 Sum_probs=26.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCC-C-----C-----HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010202 174 VMRRFSGAGQWEDAVRTFDELGTFGLE-K-----N-----TETMNLLLDTLCKEGKVELARSVFLE 228 (515)
Q Consensus 174 li~~~~~~g~~~~A~~~~~~m~~~g~~-~-----~-----~~~~~~ll~~~~~~~~~~~a~~~~~~ 228 (515)
....+.+.|++++|+..|++..+.... | + ...|..+..++.+.|++++|+..+++
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~k 82 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADK 82 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 345555566666666666665543211 0 1 11444444445555555555544444
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0005 Score=55.05 Aligned_cols=95 Identities=5% Similarity=-0.131 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCC-------Chh-----hHHHHHHHHHccCChhHHHHHHHHHHhC-----C
Q 010202 205 TMNLLLDTLCKEGKVELARSVFLELKSCIPP-------NAH-----TFNIFIHGWCKINRVDEAQWTIQEMKGH-----G 267 (515)
Q Consensus 205 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~-----~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~ 267 (515)
.+......+.+.|++++|+..|++...-.|. +.. .|+.+..++.+.|++++|+..+++..+. .
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 3445666677788888888888773221111 111 4555555555555555555555554432 0
Q ss_pred CCc-cHhHH----HHHHHHHHhcCChhHHHHHHHHHH
Q 010202 268 CHP-CVISY----STIIQSYCRQYNFSKVYELLDEMQ 299 (515)
Q Consensus 268 ~~~-~~~~~----~~li~~~~~~g~~~~A~~~~~~m~ 299 (515)
+.| +...| .....++...|++++|++.|++..
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 012 22334 444444444444444444444443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.66 E-value=0.001 Score=52.50 Aligned_cols=110 Identities=6% Similarity=-0.093 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc----cCChhHHHH
Q 010202 183 QWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCK----INRVDEAQW 258 (515)
Q Consensus 183 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~ 258 (515)
++++|+++|++..+.| .++.. +...|...+.+++|.++|++.... .+...+..|...|.. .+++++|..
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 4556666666666555 22222 444454555566666666653221 345556666666665 566667777
Q ss_pred HHHHHHhCCCCccHhHHHHHHHHHHh----cCChhHHHHHHHHHHHCC
Q 010202 259 TIQEMKGHGCHPCVISYSTIIQSYCR----QYNFSKVYELLDEMQAQG 302 (515)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 302 (515)
+|++..+.| +...+..|...|.. .+++++|+++|++..+.|
T Consensus 83 ~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 83 YYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 777666654 45556666666666 666777777777666654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00049 Score=49.43 Aligned_cols=80 Identities=10% Similarity=0.096 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 010202 134 SEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTL 213 (515)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 213 (515)
...+..+...+.+.|++++|...|++....++.+..++..+...+.+.|++++|++.|++..+.. +.+...+..+..++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 44566666667777777777777777766666666666666667777777777777776666542 23445555454444
Q ss_pred H
Q 010202 214 C 214 (515)
Q Consensus 214 ~ 214 (515)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00078 Score=65.59 Aligned_cols=124 Identities=11% Similarity=-0.041 Sum_probs=90.5
Q ss_pred HHHHcCCHHHHHHHHHHhh---c-CCC----CChhhHHHHHHHHHccCChhHHHHHHHHHHhC-----C--CCccHhHHH
Q 010202 212 TLCKEGKVELARSVFLELK---S-CIP----PNAHTFNIFIHGWCKINRVDEAQWTIQEMKGH-----G--CHPCVISYS 276 (515)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~---~-~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~ 276 (515)
.+...|++++|+.++++.. . .+. ....+++.|...|...|++++|..++++..+. | .+-...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4557789999998887722 1 122 23567899999999999999999999887542 2 122346789
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH-----CCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010202 277 TIIQSYCRQYNFSKVYELLDEMQA-----QGCP-PN-VVTYTTVMSYLAKSGDFEEAIRITEKMKI 335 (515)
Q Consensus 277 ~li~~~~~~g~~~~A~~~~~~m~~-----~g~~-~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 335 (515)
.|...|...|++++|+.++++..+ .|.. |+ ..+...+-.++...+.+++|+.++.++++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988764 2321 22 23445556677778888888888888765
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00029 Score=53.58 Aligned_cols=75 Identities=16% Similarity=0.131 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010202 153 MRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLE 228 (515)
Q Consensus 153 A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 228 (515)
|...|++..+.++.+...+..+...|...|++++|+..|++..+.. +.+...+..+..++...|++++|...|++
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444444444444444444455555555555554444432 22344444444444444555555444444
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.58 E-value=8.5e-05 Score=55.99 Aligned_cols=90 Identities=13% Similarity=0.020 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCC------hhhHHH
Q 010202 169 NTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPN------AHTFNI 242 (515)
Q Consensus 169 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~ 242 (515)
..+..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|+..+++.....|.+ ...+..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 344445566666666666666666665542 3355556666666666666666666666644333333 344444
Q ss_pred HHHHHHccCChhHHHHH
Q 010202 243 FIHGWCKINRVDEAQWT 259 (515)
Q Consensus 243 li~~~~~~g~~~~A~~~ 259 (515)
+..++...|+.+.|...
T Consensus 84 ~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHhHhhhHhH
Confidence 44445444444444433
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00031 Score=56.15 Aligned_cols=99 Identities=8% Similarity=0.023 Sum_probs=66.9
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCCh----------HHHHHHHHHHHHHcCCCCC-CHHHHHHHH
Q 010202 390 HHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKT----------DECLSQLLDDMVNKHHLSL-DITTYTLVI 458 (515)
Q Consensus 390 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~----------~~A~~~~~~~~~~~~~~~p-~~~~~~~li 458 (515)
+.+.+++|++.+++..+.. +.+...|..+..++...+++ ++|+ ..|++..+ +.| +...|..+.
T Consensus 14 r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi-~~le~AL~---ldP~~~~A~~~LG 87 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAI-TKFEEALL---IDPKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH-HHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHH-HHHHHHHH---hCcCcHHHHHHHH
Confidence 3456677777777777754 44566666666666666543 4777 77777776 344 356777777
Q ss_pred HHHHhcC-----------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010202 459 HGLCRAN-----------KCEWAYLLFKEMIGHDITPRYQTCRLILDEV 496 (515)
Q Consensus 459 ~~~~~~g-----------~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 496 (515)
.+|...| ++++|++.|++.++ +.|+...|...+..+
T Consensus 88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 7877664 78888888888886 677777666655544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0016 Score=46.64 Aligned_cols=75 Identities=15% Similarity=0.182 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 010202 171 IAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHG 246 (515)
Q Consensus 171 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 246 (515)
+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++.....|.+...+..+..+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 3334444455555555555555544432 22344444444444455555555554444332233334444433333
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0007 Score=49.97 Aligned_cols=65 Identities=14% Similarity=0.063 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010202 132 HSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGT 196 (515)
Q Consensus 132 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 196 (515)
.++.++..+...|.+.|++++|+..|++..+.++....++..+..+|...|++++|++.|++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45677777778888888888888888887777777777777777788888888888887777654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0013 Score=49.76 Aligned_cols=61 Identities=7% Similarity=-0.014 Sum_probs=23.5
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHH
Q 010202 236 NAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDE 297 (515)
Q Consensus 236 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 297 (515)
+...+..+...|...|++++|...|++..+.. +.+...|..+..+|...|++++|+..|++
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33333444444444444444444444433321 11233333344444444444444444433
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00089 Score=49.37 Aligned_cols=64 Identities=19% Similarity=0.234 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010202 377 DTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVN 443 (515)
Q Consensus 377 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 443 (515)
+...+..+...|...|++++|+..|++..+.. +.+...|..+..++...|++++|+ ..+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~-~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAI-DTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHH-HHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHh
Confidence 34445555555555555555555555555533 222344555555555555555555 55544443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00071 Score=54.02 Aligned_cols=56 Identities=16% Similarity=0.103 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHhCCCCccHhHHHHHHHHHHhc-----------CChhHHHHHHHHHHHCCCCCCHHHHHH
Q 010202 254 DEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQ-----------YNFSKVYELLDEMQAQGCPPNVVTYTT 312 (515)
Q Consensus 254 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~~~~~~~~~ 312 (515)
++|+..|++..+.. +.+..+|..+..+|... |++++|++.|++..+. .|+...|..
T Consensus 63 ~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~ 129 (158)
T 1zu2_A 63 QEAITKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLK 129 (158)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 35555555555442 22344555555555544 3566666666666654 444444433
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.041 Score=57.63 Aligned_cols=42 Identities=12% Similarity=0.060 Sum_probs=20.4
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010202 319 KSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQ 366 (515)
Q Consensus 319 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 366 (515)
..|+++.|.++.+. ..+...|..+...+.+.|+++.|.+.|.
T Consensus 664 ~~~~~~~A~~~~~~------~~~~~~W~~la~~al~~~~~~~A~~~y~ 705 (814)
T 3mkq_A 664 KVGQLTLARDLLTD------ESAEMKWRALGDASLQRFNFKLAIEAFT 705 (814)
T ss_dssp HHTCHHHHHHHHTT------CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCCHHHHHHHHHh------hCcHhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44555555544322 1234455555555555555555555554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.021 Score=59.84 Aligned_cols=150 Identities=12% Similarity=0.158 Sum_probs=83.0
Q ss_pred HcCCChHHHHH-HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 010202 145 GKVRQMDQMRA-LLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELAR 223 (515)
Q Consensus 145 ~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~ 223 (515)
...+++++|.+ ++..++ +...+..++..+.+.|.+++|+++.+. .. .-.......|+++.|.
T Consensus 610 ~~~~~~~~a~~~~l~~i~-----~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVE-----GKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTLAR 672 (814)
T ss_dssp HHTTCHHHHHHHTGGGCC-----CHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHhcCC-----chHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHHHH
Confidence 34667777766 442211 022224456667777777777765421 11 1123445677788777
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 010202 224 SVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGC 303 (515)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 303 (515)
++.+.+ .+...|..+...+.+.|+++.|.+.|.++.+ |..+...+...|+.+...++-+.....|.
T Consensus 673 ~~~~~~-----~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~ 738 (814)
T 3mkq_A 673 DLLTDE-----SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK 738 (814)
T ss_dssp HHHTTC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhh-----CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc
Confidence 775443 3567778888888888888888888777653 34445555556666655554444443321
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010202 304 PPNVVTYTTVMSYLAKSGDFEEAIRITE 331 (515)
Q Consensus 304 ~~~~~~~~~li~~~~~~g~~~~a~~~~~ 331 (515)
++....+|.+.|++++|.+++.
T Consensus 739 ------~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 739 ------FNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp ------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred ------hHHHHHHHHHcCCHHHHHHHHH
Confidence 1222233444455555554443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.014 Score=42.01 Aligned_cols=68 Identities=12% Similarity=0.057 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHHHHHcCCC---hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 010202 131 EHSSEIYEMMVDILGKVRQ---MDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFG 198 (515)
Q Consensus 131 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 198 (515)
+.|+..+..+..++...++ .++|..+|++....++.+..+...+...+.+.|++++|+..|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4577788888877764444 6999999999999999999999999999999999999999999998764
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.036 Score=50.97 Aligned_cols=32 Identities=16% Similarity=0.095 Sum_probs=15.3
Q ss_pred ccHhHHHHHHHHHHh--cCC---hhHHHHHHHHHHHC
Q 010202 270 PCVISYSTIIQSYCR--QYN---FSKVYELLDEMQAQ 301 (515)
Q Consensus 270 ~~~~~~~~li~~~~~--~g~---~~~A~~~~~~m~~~ 301 (515)
.+...|...+++... .++ ..+|+.+|++..+.
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l 228 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS 228 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 345555555544322 222 34555666655554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.016 Score=42.02 Aligned_cols=58 Identities=14% Similarity=0.227 Sum_probs=44.8
Q ss_pred HHHHHHcCCChHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 010202 140 MVDILGKVRQMDQMRALLEEMSKGHIVTLN-TIAKVMRRFSGAGQWEDAVRTFDELGTF 197 (515)
Q Consensus 140 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 197 (515)
....+.+.|++++|.+.|++..+.++.+.. ++..+..+|...|++++|++.|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 345566778888888888888777777777 7777778888888888888888887765
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.23 Score=45.69 Aligned_cols=64 Identities=13% Similarity=-0.012 Sum_probs=33.6
Q ss_pred cHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010202 271 CVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIV 336 (515)
Q Consensus 271 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 336 (515)
+..+|..+...+...|++++|+..++++...+ |+...|..+...+.-.|++++|.+.+++....
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 44445544444444555555555555555543 44444444455555555555555555555543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.013 Score=56.01 Aligned_cols=61 Identities=3% Similarity=-0.076 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHH-----CC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010202 273 ISYSTIIQSYCRQYNFSKVYELLDEMQA-----QG-CPPN-VVTYTTVMSYLAKSGDFEEAIRITEKM 333 (515)
Q Consensus 273 ~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g-~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~ 333 (515)
.+++.|..+|...|++++|+.++++..+ .| -.|+ ..+++.+...|...|++++|+.++++.
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3455555555555555555555554432 11 1111 233445555555555555555555444
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.018 Score=55.15 Aligned_cols=87 Identities=8% Similarity=-0.066 Sum_probs=39.7
Q ss_pred HHccCChhHHHHHHHHHHhCC---CCc----cHhHHHHHHHHHHhcCChhHHHHHHHHHHH-----CC-CCCC-HHHHHH
Q 010202 247 WCKINRVDEAQWTIQEMKGHG---CHP----CVISYSTIIQSYCRQYNFSKVYELLDEMQA-----QG-CPPN-VVTYTT 312 (515)
Q Consensus 247 ~~~~g~~~~A~~~~~~~~~~~---~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g-~~~~-~~~~~~ 312 (515)
+.+.|++++|+.++++..+.. +.| ...+++.+...|...|++++|+.++++... .| ..|+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 334455555555555554321 111 123455555555555555555555554432 11 1111 234445
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 010202 313 VMSYLAKSGDFEEAIRITEKM 333 (515)
Q Consensus 313 li~~~~~~g~~~~a~~~~~~~ 333 (515)
+...|...|++++|+.++++.
T Consensus 377 La~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHH
Confidence 555555555555555555544
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.011 Score=56.53 Aligned_cols=84 Identities=6% Similarity=-0.126 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHHHhhC---CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHhhc----C----CCCChhhHHHHHHH
Q 010202 182 GQWEDAVRTFDELGTF---GLEK----NTETMNLLLDTLCKEGKVELARSVFLELKS----C----IPPNAHTFNIFIHG 246 (515)
Q Consensus 182 g~~~~A~~~~~~m~~~---g~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~----~~~~~~~~~~li~~ 246 (515)
|++++|+.++++..+. -+.| -..+++.+..+|...|++++|+.++++... . .|....+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4566666666554331 1112 234566777777777777777777766211 1 12224567777778
Q ss_pred HHccCChhHHHHHHHHHHh
Q 010202 247 WCKINRVDEAQWTIQEMKG 265 (515)
Q Consensus 247 ~~~~g~~~~A~~~~~~~~~ 265 (515)
|...|++++|+.++++..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 8888888888877777653
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.078 Score=41.77 Aligned_cols=94 Identities=12% Similarity=0.073 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcC---ChHHHHHHHHHHHHHcCCCCC--CHHHHHHHHHHHHhcCCHH
Q 010202 394 HEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTG---KTDECLSQLLDDMVNKHHLSL--DITTYTLVIHGLCRANKCE 468 (515)
Q Consensus 394 ~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g---~~~~A~~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~ 468 (515)
...+.+-|.+....+ .++..+-..+..++++++ ++++++ .++++..+.. .| +...+-.+.-++.+.|+++
T Consensus 14 l~~~~~~y~~e~~~~--~~~~~~~F~ya~~Lv~S~~~~~~~~gI-~lLe~ll~~~--~p~~~rd~lY~LAv~~~kl~~Y~ 88 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRSKYNDDIRKGI-VLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYE 88 (152)
T ss_dssp HHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHTCSSHHHHHHHH-HHHHHHHHHS--CHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHccC--CCcHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHhcC--CccchHHHHHHHHHHHHHccCHH
Confidence 345566666666655 467777777778888877 566888 7888877742 23 2344445666778888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010202 469 WAYLLFKEMIGHDITPRYQTCRLILD 494 (515)
Q Consensus 469 ~A~~~~~~m~~~~~~p~~~~~~~ll~ 494 (515)
+|.+.++.+++ +.|+..--..+..
T Consensus 89 ~A~~y~~~lL~--ieP~n~QA~~Lk~ 112 (152)
T 1pc2_A 89 KALKYVRGLLQ--TEPQNNQAKELER 112 (152)
T ss_dssp HHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCCCHHHHHHHH
Confidence 88888888886 6676544444443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.044 Score=39.60 Aligned_cols=66 Identities=14% Similarity=0.168 Sum_probs=48.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhH
Q 010202 174 VMRRFSGAGQWEDAVRTFDELGTFGLEKNTE-TMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTF 240 (515)
Q Consensus 174 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 240 (515)
....+.+.|++++|++.|++..+.. +.+.. .+..+..++...|++++|.+.|++.....|.+..++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 3567778888888888888887753 33566 778888888888888888888888554444455444
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.24 Score=40.12 Aligned_cols=100 Identities=11% Similarity=0.148 Sum_probs=47.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhH
Q 010202 176 RRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDE 255 (515)
Q Consensus 176 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 255 (515)
....+.|+++.|.++.+.+ .+...|..|.......|+++-|++.|..... +..+.-.|.-.|+.+.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHH
Confidence 3344455555555554443 2344555555555555555555555555432 3334444444555544
Q ss_pred HHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHH
Q 010202 256 AQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELL 295 (515)
Q Consensus 256 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 295 (515)
..++-+.....| -++.....+...|++++++++|
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHH
Confidence 444433333332 1333334444455555555554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.036 Score=52.97 Aligned_cols=90 Identities=10% Similarity=0.029 Sum_probs=62.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCC---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHhhc----CC----CCChhh
Q 010202 175 MRRFSGAGQWEDAVRTFDELGTFG---LEK----NTETMNLLLDTLCKEGKVELARSVFLELKS----CI----PPNAHT 239 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g---~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~----~~~~~~ 239 (515)
+..+.+.|++++|++++++..+.. +.| ...+++.+..+|...|++++|+.++++... .+ |....+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667788888888888776431 122 234677788888888888888888877321 12 223456
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHH
Q 010202 240 FNIFIHGWCKINRVDEAQWTIQEMK 264 (515)
Q Consensus 240 ~~~li~~~~~~g~~~~A~~~~~~~~ 264 (515)
++.|...|...|++++|+.++++..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 7888888888888888888888764
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.33 Score=42.82 Aligned_cols=84 Identities=7% Similarity=0.038 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHhCCCCcc---HhHHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHH
Q 010202 254 DEAQWTIQEMKGHGCHPC---VISYSTIIQSYCRQ-----YNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKS-GDFE 324 (515)
Q Consensus 254 ~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~ 324 (515)
..|...+++..+. .|+ ...|..+...|.+. |+.++|.+.|++..+.+..-+..++......++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 4555666666554 243 44667777777663 77777777777777653221355556666666663 7777
Q ss_pred HHHHHHHHHHhcCCC
Q 010202 325 EAIRITEKMKIVGSK 339 (515)
Q Consensus 325 ~a~~~~~~~~~~~~~ 339 (515)
.+.+.+++..+....
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 777777777765544
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.35 Score=36.78 Aligned_cols=140 Identities=13% Similarity=0.050 Sum_probs=95.3
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHH
Q 010202 178 FSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQ 257 (515)
Q Consensus 178 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 257 (515)
+.-.|..++..++..+... ..+..-||.++.-....-+-+-..++++.+-+-+.. ..+|++....
T Consensus 17 ~ildG~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi------------s~C~NlKrVi 81 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL------------DKCQNLKSVV 81 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG------------GGCSCTHHHH
T ss_pred HHHhhhHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHHhhhcCc------------HhhhcHHHHH
Confidence 4456778888888877766 335666777776666666767777777776543322 2355555555
Q ss_pred HHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010202 258 WTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVG 337 (515)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 337 (515)
..+-.+- .+.......++.....|+-|+-.+++..+.. +.+|++.....+..+|.+.|+..++.+++.+.-+.|
T Consensus 82 ~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 5544432 2445566777778888888888888887544 346777888888888888888888888888887777
Q ss_pred C
Q 010202 338 S 338 (515)
Q Consensus 338 ~ 338 (515)
+
T Consensus 156 ~ 156 (172)
T 1wy6_A 156 E 156 (172)
T ss_dssp C
T ss_pred h
Confidence 4
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.55 Score=37.98 Aligned_cols=97 Identities=20% Similarity=0.264 Sum_probs=47.5
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 010202 318 AKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKA 397 (515)
Q Consensus 318 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 397 (515)
...|+++.|.++.+.+ .+...|..|.+...+.|+++-|.+.|. ...+ +..+.-.|.-.|+.+.-
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~-~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQ-TQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHH-HTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHH-HhCC---------HHHHHHHHHHhCCHHHH
Confidence 3455666665555443 244556666666666666666666665 3321 22333334444555554
Q ss_pred HHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHH
Q 010202 398 FHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLL 438 (515)
Q Consensus 398 ~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 438 (515)
.++-+.....| -++.....+...|++++++ +++
T Consensus 80 ~kla~iA~~~g-------~~n~af~~~l~lGdv~~~i-~lL 112 (177)
T 3mkq_B 80 SKMQNIAQTRE-------DFGSMLLNTFYNNSTKERS-SIF 112 (177)
T ss_dssp HHHHHHHHHTT-------CHHHHHHHHHHHTCHHHHH-HHH
T ss_pred HHHHHHHHHCc-------cHHHHHHHHHHcCCHHHHH-HHH
Confidence 44444444433 1233333444556666655 444
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.86 E-value=0.41 Score=36.41 Aligned_cols=138 Identities=13% Similarity=0.112 Sum_probs=76.2
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 010202 319 KSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAF 398 (515)
Q Consensus 319 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 398 (515)
-.|..+++.++..+.... .+..-||-+|.-....-+-+...++++ .+-.. -|. ...|+.....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd-~IGki---FDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLD-KIGSY---FDL----------DKCQNLKSVV 81 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHH-HHGGG---SCG----------GGCSCTHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHH-HHhhh---cCc----------HhhhcHHHHH
Confidence 356667777776666542 334445545444444444444455554 33221 111 1234555555
Q ss_pred HHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010202 399 HVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMI 478 (515)
Q Consensus 399 ~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 478 (515)
..+-.+ .-+...+...+......|+-|+ ++++...+.. ..+|++...-.+..+|.+.|+..+|.+++++..
T Consensus 82 ~C~~~~------n~~se~vd~ALd~lv~~~KkDq-Ldki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC 152 (172)
T 1wy6_A 82 ECGVIN------NTLNEHVNKALDILVIQGKRDK-LEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEAC 152 (172)
T ss_dssp HHHHHT------TCCCHHHHHHHHHHHHTTCHHH-HHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHh------cchHHHHHHHHHHHHHhccHhH-HHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 555443 1233445555666667777666 3366666433 345666677777777777777777777777777
Q ss_pred hCCC
Q 010202 479 GHDI 482 (515)
Q Consensus 479 ~~~~ 482 (515)
++|+
T Consensus 153 ~kG~ 156 (172)
T 1wy6_A 153 KKGE 156 (172)
T ss_dssp HTTC
T ss_pred Hhhh
Confidence 7664
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.85 E-value=0.075 Score=39.09 Aligned_cols=25 Identities=0% Similarity=-0.097 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 010202 170 TIAKVMRRFSGAGQWEDAVRTFDEL 194 (515)
Q Consensus 170 ~~~~li~~~~~~g~~~~A~~~~~~m 194 (515)
.+..+...+.+.|++..|..+|+..
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~A 31 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQA 31 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHH
Confidence 3334444444444444444444443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.17 Score=36.21 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010202 395 EKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVN 443 (515)
Q Consensus 395 ~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 443 (515)
++|..++++..+.. +-+......+...+...|++++|+ ..|+++.+
T Consensus 26 ~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai-~~w~~~l~ 71 (93)
T 3bee_A 26 DEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAI-DTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHT
T ss_pred HHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHh
Confidence 44444444444422 222333333334444444444444 44444433
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.62 E-value=0.13 Score=37.69 Aligned_cols=66 Identities=9% Similarity=0.024 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHhcC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 010202 132 HSSEIYEMMVDILGKVRQMDQMRALLEEMSKG-------HIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTF 197 (515)
Q Consensus 132 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 197 (515)
.++.-+..|...+.+.|+++.|...|+...+. +......+..+..++.+.|++++|+..+++..+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 46677888999999999999999999987552 2345677788888999999999999999888874
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.51 E-value=0.089 Score=41.43 Aligned_cols=77 Identities=13% Similarity=0.038 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHH
Q 010202 152 QMRALLEEMSKGHIVTLNTIAKVMRRFSGAG---QWEDAVRTFDELGTFGLEK--NTETMNLLLDTLCKEGKVELARSVF 226 (515)
Q Consensus 152 ~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~~--~~~~~~~ll~~~~~~~~~~~a~~~~ 226 (515)
.+++-|.+....+.++..+...+..++++.+ +.++++.+|++..+.. .| +...+-.+.-+|.+.|++++|.+.+
T Consensus 16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3444444444444455555555555555555 3445555555555432 12 1223333444455555555555555
Q ss_pred HHh
Q 010202 227 LEL 229 (515)
Q Consensus 227 ~~~ 229 (515)
+.+
T Consensus 95 ~~l 97 (152)
T 1pc2_A 95 RGL 97 (152)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.82 E-value=0.29 Score=43.13 Aligned_cols=88 Identities=15% Similarity=0.126 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhCCCCCCC---HHhHHHHHHHHHh-----cCChHHHHHHHHHHHHHcCCCCC--CHHHHHHHHHHHHh
Q 010202 394 HEKAFHVLEEMNKLEHCKPN---VQTFHPLLKSCFK-----TGKTDECLSQLLDDMVNKHHLSL--DITTYTLVIHGLCR 463 (515)
Q Consensus 394 ~~~A~~~~~~m~~~~~~~p~---~~~~~~ll~~~~~-----~g~~~~A~~~~~~~~~~~~~~~p--~~~~~~~li~~~~~ 463 (515)
...|...+++..+ +.|+ ...|..+...|.. -|+.++|. +.|++..+ +.| +..++....+.+++
T Consensus 179 l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~-~~ferAL~---LnP~~~id~~v~YA~~l~~ 251 (301)
T 3u64_A 179 VHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAH-TAFEHLTR---YCSAHDPDHHITYADALCI 251 (301)
T ss_dssp HHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHH-HHHHHHHH---HCCTTCSHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHH-HHHHHHHH---hCCCCCchHHHHHHHHHHH
Confidence 3456666666666 3455 4456666666666 37777776 77777776 234 25556666677766
Q ss_pred c-CCHHHHHHHHHHHHhCCCC--CCHHH
Q 010202 464 A-NKCEWAYLLFKEMIGHDIT--PRYQT 488 (515)
Q Consensus 464 ~-g~~~~A~~~~~~m~~~~~~--p~~~~ 488 (515)
. |+.++|.+.+++.+..+.. |+...
T Consensus 252 ~~gd~~~a~~~L~kAL~a~p~~~P~~~l 279 (301)
T 3u64_A 252 PLNNRAGFDEALDRALAIDPESVPHNKL 279 (301)
T ss_dssp TTTCHHHHHHHHHHHHHCCGGGCSSCHH
T ss_pred hcCCHHHHHHHHHHHHcCCCCCCCChhH
Confidence 4 7777777777777765544 44433
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.41 E-value=5.7 Score=41.47 Aligned_cols=154 Identities=9% Similarity=-0.006 Sum_probs=68.1
Q ss_pred HHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCH
Q 010202 246 GWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYT--TVMSYLAKSGDF 323 (515)
Q Consensus 246 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~ 323 (515)
.+.-.|+-+....++..+.+.. .-+..-...+.-++...|+.+.+..+.+.+... ..|....-. ++.-+|+..|+.
T Consensus 499 i~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~ 576 (963)
T 4ady_A 499 CMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNN 576 (963)
T ss_dssp HHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCH
T ss_pred hhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCH
Confidence 3445555555556665555431 111111222222333556666666666665543 111111111 223345556666
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCH-HHHHHH
Q 010202 324 EEAIRITEKMKIVGSKPDSRFFNCLIY--TLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHH-EKAFHV 400 (515)
Q Consensus 324 ~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~ 400 (515)
....+++..+... ++..+-...+. ++...|+.+.+.++++ .+.+.+ .|.+.--..+..+....|.. .+++++
T Consensus 577 ~aIq~LL~~~~~d---~~d~VRraAViaLGlI~~g~~e~v~rlv~-~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~ 651 (963)
T 4ady_A 577 SAVKRLLHVAVSD---SNDDVRRAAVIALGFVLLRDYTTVPRIVQ-LLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDV 651 (963)
T ss_dssp HHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTSSSCSSHHHHTT-TGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred HHHHHHHHHhccC---CcHHHHHHHHHHHHhhccCCHHHHHHHHH-HHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence 5555566666542 22222222222 2333455555555555 443322 23333333333444444443 456666
Q ss_pred HHHHHh
Q 010202 401 LEEMNK 406 (515)
Q Consensus 401 ~~~m~~ 406 (515)
+..+..
T Consensus 652 L~~L~~ 657 (963)
T 4ady_A 652 LDPLTK 657 (963)
T ss_dssp HHHHHT
T ss_pred HHHHcc
Confidence 666654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.28 E-value=0.63 Score=36.23 Aligned_cols=52 Identities=8% Similarity=0.077 Sum_probs=30.1
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010202 286 YNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGS 338 (515)
Q Consensus 286 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 338 (515)
++.++|.++|+.+.+..-.- ...|......=.+.|++..|.+++...+..+.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 56666666666665432222 44444444444566777777777777666553
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.71 E-value=0.79 Score=35.69 Aligned_cols=103 Identities=20% Similarity=0.154 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHHHcCCH------HHHHHHHHHhhcCCCCChh-hHHHHHH------HHHccCChhHHHHHHHHHHhCCC
Q 010202 202 NTETMNLLLDTLCKEGKV------ELARSVFLELKSCIPPNAH-TFNIFIH------GWCKINRVDEAQWTIQEMKGHGC 268 (515)
Q Consensus 202 ~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~~~-~~~~li~------~~~~~g~~~~A~~~~~~~~~~~~ 268 (515)
|..+|-..+...-+.|+. ++..++|++.....||+.. .|...|. .+...++.++|.++|+.+.+.+-
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~hK 91 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCK 91 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhH
Confidence 556666666666666666 6666777775555555431 1111111 11234789999999999866532
Q ss_pred CccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 010202 269 HPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPP 305 (515)
Q Consensus 269 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 305 (515)
. =...|-.....=.++|+.+.|.+++......+.+|
T Consensus 92 k-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 92 K-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp T-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred H-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 2 26677777777788999999999999988876654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.68 E-value=0.48 Score=35.85 Aligned_cols=89 Identities=15% Similarity=0.101 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHH---HHHHHHHHHHHcCCCCC--CHHHHHHHHHHHHhcCCH
Q 010202 393 HHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDE---CLSQLLDDMVNKHHLSL--DITTYTLVIHGLCRANKC 467 (515)
Q Consensus 393 ~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~---A~~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~ 467 (515)
....+.+-|.+....| .|+..+--.+..++.++.+... ++ .+++++.+. + .| .....-.+.-++.+.|++
T Consensus 16 ~l~~~~~~y~~e~~~~--~~s~~~~F~yAw~Lv~S~~~~d~~~GI-~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGI-VLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHH-HHHHHHTTT-S-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHhc-C-CcchHHHHHHHHHHHHHHhhhH
Confidence 3445555565555555 4777777777778887776655 77 777777652 1 13 223333466678888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHH
Q 010202 468 EWAYLLFKEMIGHDITPRYQT 488 (515)
Q Consensus 468 ~~A~~~~~~m~~~~~~p~~~~ 488 (515)
++|.+.++.+++ +.|+..-
T Consensus 91 ~~A~~~~~~lL~--~eP~n~Q 109 (126)
T 1nzn_A 91 EKALKYVRGLLQ--TEPQNNQ 109 (126)
T ss_dssp HHHHHHHHHHHH--HCTTCHH
T ss_pred HHHHHHHHHHHH--hCCCCHH
Confidence 888888888886 5665433
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=93.04 E-value=0.69 Score=33.01 Aligned_cols=63 Identities=11% Similarity=0.136 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 010202 183 QWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIH 245 (515)
Q Consensus 183 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 245 (515)
+.-+..+-++.+....+-|++....+.+++|-+.+++..|.++++.++....+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 455777788888888889999999999999999999999999999987665555566776654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.82 E-value=0.6 Score=35.30 Aligned_cols=75 Identities=13% Similarity=0.023 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHhhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010202 153 MRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWED---AVRTFDELGTFGLEK--NTETMNLLLDTLCKEGKVELARSVFL 227 (515)
Q Consensus 153 A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~ 227 (515)
+++-+.+....+.++..+...+..++++...... ++.+++++.+.+ .| .....-.+.-++.+.|++++|.+.++
T Consensus 20 ~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~ 98 (126)
T 1nzn_A 20 FEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVR 98 (126)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3333333333333444444444455555444433 455555544432 11 11122223334444444444444444
Q ss_pred H
Q 010202 228 E 228 (515)
Q Consensus 228 ~ 228 (515)
.
T Consensus 99 ~ 99 (126)
T 1nzn_A 99 G 99 (126)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.61 E-value=7.3 Score=37.13 Aligned_cols=49 Identities=14% Similarity=0.276 Sum_probs=33.4
Q ss_pred CChHHHHHHHHHHhc-----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010202 148 RQMDQMRALLEEMSK-----GH-IVTLNTIAKVMRRFSGAGQWEDAVRTFDELGT 196 (515)
Q Consensus 148 g~~~~A~~~~~~~~~-----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 196 (515)
|+++.|.+.+-.+.+ .+ ..+......++..+...|+++...+.+..+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 677778777655543 22 24567777778888888888887777666543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.14 E-value=0.59 Score=43.84 Aligned_cols=54 Identities=7% Similarity=0.002 Sum_probs=28.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010202 174 VMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLE 228 (515)
Q Consensus 174 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 228 (515)
++..+...|++++|+..+..+.... +.+...+..+|.++.+.|+..+|++.|+.
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~ 230 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRR 230 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3445555555555555555554432 33555555555555555555555555554
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=91.92 E-value=14 Score=38.70 Aligned_cols=349 Identities=8% Similarity=-0.061 Sum_probs=187.6
Q ss_pred HHHHHHHHHHcCCChHHH-HHHH-HHHhcCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH--HHHHH
Q 010202 136 IYEMMVDILGKVRQMDQM-RALL-EEMSKGHIVTLNTIAKV-MRRFSGAGQWEDAVRTFDELGTFGLEKNTET--MNLLL 210 (515)
Q Consensus 136 ~~~~li~~~~~~g~~~~A-~~~~-~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~--~~~ll 210 (515)
+...+.+++..+|--.+. .... +.+.+ . .+|.-+.+. .-+....|+.++++.++......+-..+... -..+.
T Consensus 341 ~A~~f~Naf~naG~~~D~~l~~~~~Wl~k-~-~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAlla 418 (963)
T 4ady_A 341 TAVSVANGFMHAGTTDNSFIKANLPWLGK-A-QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYG 418 (963)
T ss_dssp HHHHHHHHHHTTTTCCCHHHHHCHHHHHH-C-CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcchhhhcchhhhhc-c-chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHH
Confidence 445677888888754322 2222 22222 2 345444332 4567788999999888877664211223332 23334
Q ss_pred HHHHHcCCHHHHHHHHHH-hhcCC-------CCChhhHHHHHHHHHccCCh-hHHHHHHHHHHhCCCCccHhHHH--HHH
Q 010202 211 DTLCKEGKVELARSVFLE-LKSCI-------PPNAHTFNIFIHGWCKINRV-DEAQWTIQEMKGHGCHPCVISYS--TII 279 (515)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~-~~~~~-------~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~--~li 279 (515)
-+....|..+++..++.. +.... .+....-.++.-+++-.|.- +++.+.+..+.... .+...... +|.
T Consensus 419 LGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALG 497 (963)
T 4ady_A 419 LGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYND-SATSGEAAALGMG 497 (963)
T ss_dssp HHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHh
Confidence 445566665667777766 44321 11223334444444444532 45666666665532 11111122 223
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH--HHHHHHHhc
Q 010202 280 QSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMS--YLAKSGDFEEAIRITEKMKIVGSKPDSRFFN--CLIYTLGRA 355 (515)
Q Consensus 280 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~ 355 (515)
..++-.|+.+....++..+.+.. +......+.- ++...|+.+.+..+.+.+.... .|....-. ++.-+|+..
T Consensus 498 li~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGT 573 (963)
T 4ady_A 498 LCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGT 573 (963)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTS
T ss_pred hhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCC
Confidence 33456677777777777766542 3333333444 4446789898888888887632 22222222 334567788
Q ss_pred CCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCCh-HHHH
Q 010202 356 SRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKT-DECL 434 (515)
Q Consensus 356 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~-~~A~ 434 (515)
|+......++. .+... ...++.-...+.-++...|+.+.+.+++..+.+.+ .|...--..+.-+....|.. .+++
T Consensus 574 Gn~~aIq~LL~-~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~--d~~VR~gAalALGli~aGn~~~~ai 649 (963)
T 4ady_A 574 GNNSAVKRLLH-VAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH--NAHVRCGTAFALGIACAGKGLQSAI 649 (963)
T ss_dssp CCHHHHHHHHH-HHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS--CHHHHHHHHHHHHHHTSSSCCHHHH
T ss_pred CCHHHHHHHHH-HhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhccCCCcHHHH
Confidence 99888888887 55543 12233333333445556788888888888777654 56655555555555556554 5667
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcC
Q 010202 435 SQLLDDMVNKHHLSLDITTYTLVIHGLCRAN---------KCEWAYLLFKEMIGHD-ITPRYQTCRLILDEVKQKH 500 (515)
Q Consensus 435 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---------~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g 500 (515)
.++..+.. .+|..+-..-+.+++.-| ++....+.+....... -.|+......+..+....|
T Consensus 650 -d~L~~L~~----D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG 720 (963)
T 4ady_A 650 -DVLDPLTK----DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAG 720 (963)
T ss_dssp -HHHHHHHT----CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTG
T ss_pred -HHHHHHcc----CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcC
Confidence 78888876 244444333333443322 4555566555554422 1233444444444554443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.73 E-value=0.59 Score=47.61 Aligned_cols=129 Identities=13% Similarity=0.113 Sum_probs=85.0
Q ss_pred HHHHHHHHHHcCCC-hHHHHHHHHHHhcCCCCCHHHH-HHHHHHHHhcC-CHHHHHHHHHHHhhC------CCCC-CH--
Q 010202 136 IYEMMVDILGKVRQ-MDQMRALLEEMSKGHIVTLNTI-AKVMRRFSGAG-QWEDAVRTFDELGTF------GLEK-NT-- 203 (515)
Q Consensus 136 ~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~-~~li~~~~~~g-~~~~A~~~~~~m~~~------g~~~-~~-- 203 (515)
.-..|+..+.-.|+ .+.|..+|+++...++.....+ ..++..+.+.+ +--+|.+++.+..+. ...+ +.
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 44556666666777 5889999999988776433222 22233322222 233556555554321 1111 21
Q ss_pred --------HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 010202 204 --------ETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMK 264 (515)
Q Consensus 204 --------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 264 (515)
.....-.+.|...|+++.|+++-++...-.|.+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1222234556778999999999998666677888999999999999999999999998874
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=91.32 E-value=16 Score=39.83 Aligned_cols=85 Identities=8% Similarity=0.093 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 010202 274 SYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNV----VTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLI 349 (515)
Q Consensus 274 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 349 (515)
-|..++..+.+.+.++.++++-+...+....-+. ..|..+.+++...|++++|...+-.+.... .-......||
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~r~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--LKKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--SCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--HHHHHHHHHH
Confidence 3666777777888888888777665543211121 246777788888888888887777665443 2345566677
Q ss_pred HHHHhcCCHHH
Q 010202 350 YTLGRASRVQE 360 (515)
Q Consensus 350 ~~~~~~g~~~~ 360 (515)
...|..|..+.
T Consensus 979 ~~lce~~~~~~ 989 (1139)
T 4fhn_B 979 NQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHCCHHH
T ss_pred HHHHhCCChhh
Confidence 66666655443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=90.94 E-value=0.00044 Score=64.88 Aligned_cols=194 Identities=10% Similarity=0.118 Sum_probs=88.3
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 010202 133 SSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDT 212 (515)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 212 (515)
|+..|..+|....+.|.+++-.+.+....+. ......=..|+-+|++.++..+-.+++ -.||..-...+.+-
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGDr 153 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDR 153 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHH
Confidence 3445556666666666666666666544331 111111122355666666654433222 23555555666666
Q ss_pred HHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHH
Q 010202 213 LCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVY 292 (515)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 292 (515)
|...|.++.|.-+|..+.. |..|...+.+.|++..|.+.-++ .-++.||..+-.+|...+++.-|.
T Consensus 154 cf~e~lYeAAKilys~isN--------~akLAstLV~L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAq 219 (624)
T 3lvg_A 154 CYDEKMYDAAKLLYNNVSN--------FGRLASTLVHLGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQ 219 (624)
T ss_dssp HHHSCCSTTSSTTGGGSCC--------CTTTSSSSSSCSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTT
T ss_pred HHHccCHHHHHHHHHhCcc--------HHHHHHHHHHHHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHH
Confidence 6666666666666544322 22233344444444444332211 124445555555555555554443
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 010202 293 ELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGR 354 (515)
Q Consensus 293 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 354 (515)
-.--.+.-. || -...++..|-..|.+++.+.+++.-.... ......|+-|.-.|++
T Consensus 220 icGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsK 275 (624)
T 3lvg_A 220 MCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 275 (624)
T ss_dssp HHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHS
T ss_pred Hhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHh
Confidence 322222211 11 11123344444555555555544443211 2334444444444443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.85 E-value=1.7 Score=44.35 Aligned_cols=51 Identities=16% Similarity=0.008 Sum_probs=43.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010202 448 SLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKH 500 (515)
Q Consensus 448 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 500 (515)
+-+..-|..|.....|.+.+++|.+.|+..+. .+-++..+.-||..|.+.+
T Consensus 610 kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~--~RFs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 610 KHSGLEWELLGLIMLRTWHWEDAVACLRTSIV--ARFDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHS--SSCCHHHHHHHHHHHHSCC
T ss_pred ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hccCHHHHHHHHHHHHhcC
Confidence 44566799999999999999999999999986 4678889999999998876
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=90.60 E-value=1.6 Score=33.10 Aligned_cols=63 Identities=11% Similarity=0.136 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 010202 183 QWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIH 245 (515)
Q Consensus 183 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 245 (515)
+.-+..+-++.+....+-|++....+.+++|-+.+++..|.++|+.++....+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 344666777788888889999999999999999999999999999988766666666776654
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=90.30 E-value=2 Score=30.72 Aligned_cols=78 Identities=13% Similarity=0.173 Sum_probs=50.2
Q ss_pred hHHHHHHHHHhcCChHH--HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010202 416 TFHPLLKSCFKTGKTDE--CLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLIL 493 (515)
Q Consensus 416 ~~~~ll~~~~~~g~~~~--A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 493 (515)
.|..--..+...-+.|. .. +-++.+.. +.+.|++....+.+.+|.|.+++.-|.++++-...+ ..+...+|..++
T Consensus 10 eF~aRy~~~F~~~~iD~~e~r-rglN~l~~-~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 10 EFDARWVTYFNKPDIDAWELR-KGMNTLVG-YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHTCTTCCHHHHH-HHHHHHTT-SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHcCCcCccHHHHH-HHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 34444444555444332 22 44444444 567788888999999999999999999999887753 344455677666
Q ss_pred HHH
Q 010202 494 DEV 496 (515)
Q Consensus 494 ~~~ 496 (515)
+-+
T Consensus 87 qEl 89 (109)
T 1v54_E 87 QEL 89 (109)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=89.65 E-value=0.0011 Score=62.19 Aligned_cols=214 Identities=13% Similarity=0.077 Sum_probs=108.9
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010202 237 AHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSY 316 (515)
Q Consensus 237 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 316 (515)
+.+|..|..++.+.+.+.+|++-|-+. -|+..|..++.+..+.|.+++-++++....+..- ++..=+.++-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHH
Confidence 344555555555555555554433221 1334455555555555555555555544443321 22233445555
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhC--------------------CCCC
Q 010202 317 LAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPEN--------------------GVAP 376 (515)
Q Consensus 317 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------------------~~~~ 376 (515)
|++.+++.+-.+++. .|+..-...+.+-|...|.++.|.-+|. .+... .-..
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys-~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYN-NVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGG-GSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHH-hCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 555555433222221 2333333334444444444444444443 22110 0123
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCC-CCCHHHHH
Q 010202 377 DTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHL-SLDITTYT 455 (515)
Q Consensus 377 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-~p~~~~~~ 455 (515)
++.||-.+-.+|...+++.-|--+--.++-.. | ....++..|-..|.+++-+ .+++.-. |. ......|+
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvha----d--eL~elv~~YE~~G~f~ELI-sLlEagl---glErAHmGmFT 267 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVHA----D--ELEELINYYQDRGYFEELI-TMLEAAL---GLERAHMGMFT 267 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS----S--CCSGGGSSSSTTCCCTTST-TTHHHHT---TSTTCCHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhcccH----H--HHHHHHHHHHhCCCHHHHH-HHHHHHh---CCCchhHHHHH
Confidence 56778888888888888777665555544322 1 1223555677788888766 6666553 32 23567788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 010202 456 LVIHGLCRANKCEWAYLLFKEM 477 (515)
Q Consensus 456 ~li~~~~~~g~~~~A~~~~~~m 477 (515)
-|.-.|++- ++++-.+.++-.
T Consensus 268 ELaILYsKY-~PeKlmEHlklf 288 (624)
T 3lvg_A 268 ELAILYSKF-KPQKMREHLELF 288 (624)
T ss_dssp HHHHHHHSS-CTTHHHHHHTTS
T ss_pred HHHHHHHhc-CHHHHHHHHHHH
Confidence 888888776 456555555443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=89.55 E-value=12 Score=33.86 Aligned_cols=111 Identities=13% Similarity=0.062 Sum_probs=61.8
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH----HHHHhhCCCCCCHHHHHHHHH
Q 010202 136 IYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRT----FDELGTFGLEKNTETMNLLLD 211 (515)
Q Consensus 136 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~~~~~~~~~ll~ 211 (515)
.|.++..=|.+.+++++|.+++..- ...+.+.|+...|.++ .+.+.+.++++|......++.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G--------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV--------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH--------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3445666678888888888877543 3456667776655444 355556677788777777776
Q ss_pred HHHHcCCHHHHHH-HHHH-h----hcC--CCCChhhHHHHHHHHHccCChhHHHHHH
Q 010202 212 TLCKEGKVELARS-VFLE-L----KSC--IPPNAHTFNIFIHGWCKINRVDEAQWTI 260 (515)
Q Consensus 212 ~~~~~~~~~~a~~-~~~~-~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~ 260 (515)
.+.....-+-.+. +.++ + +.+ -.-++.....+...|.+.+++.+|+..|
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 6665543111111 1111 0 111 2234445555556666666665555554
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.35 E-value=1.3 Score=41.47 Aligned_cols=55 Identities=11% Similarity=0.079 Sum_probs=27.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHH
Q 010202 209 LLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEM 263 (515)
Q Consensus 209 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 263 (515)
++..+...|+.+++...+..+....|.+...|..+|.++.+.|+..+|++.|+..
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444445555555555554443334445555555555555555555555555444
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=89.29 E-value=12 Score=33.55 Aligned_cols=111 Identities=8% Similarity=-0.004 Sum_probs=62.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH----HHHHHhhCCCCCCHHHHHHHHH
Q 010202 136 IYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVR----TFDELGTFGLEKNTETMNLLLD 211 (515)
Q Consensus 136 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~----~~~~m~~~g~~~~~~~~~~ll~ 211 (515)
.|.++..=|.+.+++++|.+++..- ...+.+.|+...|-+ +.+.+.+.+++++......++.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g--------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG--------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH--------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4455666677788888888877543 345566777665554 3455566677777777777776
Q ss_pred HHHHcCCH--------HHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHH
Q 010202 212 TLCKEGKV--------ELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTI 260 (515)
Q Consensus 212 ~~~~~~~~--------~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 260 (515)
.+.....- ..|+++-......-.-++.....+...|.+.|++.+|+..|
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 66553321 11111111111111234555666666666666666665544
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.22 E-value=15 Score=34.86 Aligned_cols=239 Identities=13% Similarity=0.105 Sum_probs=124.8
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----hcCCHHH--HHHHHHHHhh--CC-
Q 010202 128 PGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFS----GAGQWED--AVRTFDELGT--FG- 198 (515)
Q Consensus 128 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~--A~~~~~~m~~--~g- 198 (515)
.....+..+...++..+.+.|+++...+.+..+..+......+...+++.+. .....+. -+.+.+.+.. .|
T Consensus 50 ~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~k 129 (445)
T 4b4t_P 50 SDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENK 129 (445)
T ss_dssp CSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCC
T ss_pred cchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccc
Confidence 3445567788888888888888888877777766554444444444443322 1222221 1222222111 11
Q ss_pred CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CCCCC---hhhHHHHHHHHHccCChhHHHHHHHHHHh----
Q 010202 199 LEK---NTETMNLLLDTLCKEGKVELARSVFLELKS---CIPPN---AHTFNIFIHGWCKINRVDEAQWTIQEMKG---- 265 (515)
Q Consensus 199 ~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~---- 265 (515)
+-. .......|...+...|++.+|..++..+.. +..+. ...+...++.|...+++..|..++.+...
T Consensus 130 iflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~ 209 (445)
T 4b4t_P 130 IFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFK 209 (445)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcc
Confidence 001 112234567777788888888888877432 11111 34566677778888888888888777532
Q ss_pred CCCCcc--HhHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHhcCC
Q 010202 266 HGCHPC--VISYSTIIQSYCRQYNFSKVYELLDEMQAQ-GCPPNVVTYTTVM----SYLAKSGDFEEAIRITEKMKIVGS 338 (515)
Q Consensus 266 ~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li----~~~~~~g~~~~a~~~~~~~~~~~~ 338 (515)
....|+ ...+...+..+...+++.+|-+.|.+.... ....|...+..++ ....-.+..+.-..+.....+...
T Consensus 210 ~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~ 289 (445)
T 4b4t_P 210 NPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNN 289 (445)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSS
T ss_pred cCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhccc
Confidence 221222 234556666677778888887777766432 1111222222111 111111111111222222222222
Q ss_pred CCCHHHHHHHHHHHHhc--CCHHHHHHHHH
Q 010202 339 KPDSRFFNCLIYTLGRA--SRVQEAVYVYQ 366 (515)
Q Consensus 339 ~~~~~~~~~li~~~~~~--g~~~~A~~~~~ 366 (515)
.++...+..++.+|... .+++.....|.
T Consensus 290 ~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~ 319 (445)
T 4b4t_P 290 LKKLESQESLVKLFTTNELMRWPIVQKTYE 319 (445)
T ss_dssp CHHHHHHHHHHHHHHHCCSSSHHHHHHHTC
T ss_pred ccccHHHHHHHHHHHhchHhhhHHHHHHHH
Confidence 34566777777777653 45666666665
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=88.72 E-value=17 Score=39.43 Aligned_cols=147 Identities=10% Similarity=0.064 Sum_probs=95.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCC---------------
Q 010202 312 TVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAP--------------- 376 (515)
Q Consensus 312 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------- 376 (515)
.++..+.+.+..+.+.++.... +.+....-.+..+|..+|++++|...|. ... .|+..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~-kaa-~~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFK-TTS-LVLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHH-TCC-CSCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHH-HHh-hhhcccchhhhhhccccccc
Confidence 3455566667766666554432 3344444456678889999999999998 332 11111
Q ss_pred --------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC-CCCH--HhHHHHHHHHHhcCChHHHHHHHHHHHHHcC
Q 010202 377 --------DTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHC-KPNV--QTFHPLLKSCFKTGKTDECLSQLLDDMVNKH 445 (515)
Q Consensus 377 --------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 445 (515)
-..-|..++..+.+.|.++.+.++-...++.... .++. ..|..+.+++...|++++|. ..+-.+.. .
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay-~aL~~~pd-~ 967 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH-VALMVLST-T 967 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG-HHHHHHHH-S
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH-HHHHhCCC-H
Confidence 1234677888888999999999888877764311 1221 25788889999999999998 66666654 2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHH
Q 010202 446 HLSLDITTYTLVIHGLCRANKCEW 469 (515)
Q Consensus 446 ~~~p~~~~~~~li~~~~~~g~~~~ 469 (515)
. --......+|..++..|..+.
T Consensus 968 ~--~r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 968 P--LKKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp S--SCHHHHHHHHHHHHHHCCHHH
T ss_pred H--HHHHHHHHHHHHHHhCCChhh
Confidence 2 234566777777776665443
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=87.77 E-value=24 Score=35.21 Aligned_cols=116 Identities=5% Similarity=-0.024 Sum_probs=67.6
Q ss_pred CCHHHHHHHHHhhchhCCCCCCHHHHH----HHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChH
Q 010202 356 SRVQEAVYVYQVEMPENGVAPDTSTFN----TMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTD 431 (515)
Q Consensus 356 g~~~~A~~~~~~~~~~~~~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~ 431 (515)
.+.+.|...+. ...... ..+..... .+.......+...++...+...... .++.....-.+....+.|+++
T Consensus 228 ~d~~~A~~~~~-~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~ 302 (618)
T 1qsa_A 228 QDAENARLMIP-SLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRR 302 (618)
T ss_dssp HCHHHHHHHHH-HHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHH
T ss_pred cCHHHHHHHHH-hhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHH
Confidence 37788888887 554322 22333322 2222333444355677777776553 344444444444455779999
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010202 432 ECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIG 479 (515)
Q Consensus 432 ~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 479 (515)
.|. ..|+.|... .. ....-.-=+..++...|+.++|..+|+++.+
T Consensus 303 ~a~-~~~~~l~~~-~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 303 GLN-TWLARLPME-AK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHH-HHHHHSCTT-GG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHH-HHHHHcccc-cc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 988 888777541 11 1222122245577788999999999999864
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=87.17 E-value=5 Score=34.81 Aligned_cols=56 Identities=16% Similarity=0.043 Sum_probs=45.6
Q ss_pred HHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 010202 142 DILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTF 197 (515)
Q Consensus 142 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 197 (515)
..+.+.|++++|++....-.+.+|.+...-..++..+|-.|++++|.+-++...+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34567888888888888888888888888888888888888888888888777663
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=85.10 E-value=5.3 Score=30.28 Aligned_cols=80 Identities=13% Similarity=0.175 Sum_probs=50.6
Q ss_pred HHhHHHHHHHHHhcCChHHHH--HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010202 414 VQTFHPLLKSCFKTGKTDECL--SQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRL 491 (515)
Q Consensus 414 ~~~~~~ll~~~~~~g~~~~A~--~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 491 (515)
..-|..--..|...-++|. + ++-++.+.. +.+.|++....+.+.+|.+.+++.-|.++++-...+ ..+...+|..
T Consensus 51 ~EeFdaRy~~~F~~~~iD~-wElrrglN~l~~-~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y 127 (152)
T 2y69_E 51 DEEFDARWVTYFNKPDIDA-WELRKGMNTLVG-YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPY 127 (152)
T ss_dssp HHHHHHHHHHHHTCTTCCH-HHHHHHHHHHTT-SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHH
T ss_pred HHHHHHHHHHHcCCcCccH-HHHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHH
Confidence 3344444445555554432 2 133333433 567788888888888888888898898888887652 3455556776
Q ss_pred HHHHH
Q 010202 492 ILDEV 496 (515)
Q Consensus 492 ll~~~ 496 (515)
+++-+
T Consensus 128 ~lqEl 132 (152)
T 2y69_E 128 VIQEL 132 (152)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.75 E-value=7.6 Score=30.84 Aligned_cols=26 Identities=4% Similarity=-0.098 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010202 452 TTYTLVIHGLCRANKCEWAYLLFKEM 477 (515)
Q Consensus 452 ~~~~~li~~~~~~g~~~~A~~~~~~m 477 (515)
+.---+..+|.+.|++++|+.+++..
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 33334677888888888888887754
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.70 E-value=19 Score=33.98 Aligned_cols=99 Identities=13% Similarity=-0.003 Sum_probs=66.6
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHhCC--CCccHhHHHHHHHHHHhcCChhHHHHHHHHHHH---CCCCCCHHHHH-
Q 010202 238 HTFNIFIHGWCKINRVDEAQWTIQEMKGHG--CHPCVISYSTIIQSYCRQYNFSKVYELLDEMQA---QGCPPNVVTYT- 311 (515)
Q Consensus 238 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~~~~~~~~- 311 (515)
.+...+...|.+.|++++|.+.|.++.... ..--...+-.+++.+...+++..+...+.+... .+..|+....-
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 466778889999999999999999887642 222345677788888889999999888888654 23233322110
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHhc
Q 010202 312 -TVMSYLAKSGDFEEAIRITEKMKIV 336 (515)
Q Consensus 312 -~li~~~~~~g~~~~a~~~~~~~~~~ 336 (515)
.-...+...+++..|-..|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1111223568888888888776554
|
| >2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A | Back alignment and structure |
|---|
Probab=82.13 E-value=44 Score=33.49 Aligned_cols=23 Identities=13% Similarity=0.101 Sum_probs=16.0
Q ss_pred HHHHHHHcCCChHHHHHHHHHHh
Q 010202 139 MMVDILGKVRQMDQMRALLEEMS 161 (515)
Q Consensus 139 ~li~~~~~~g~~~~A~~~~~~~~ 161 (515)
++|-.+.++|.+++|.++.++..
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~ 179 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENK 179 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTG
T ss_pred HHHHHHHhcCCHHHHHHHHHHhh
Confidence 55666677777777777776654
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=81.68 E-value=4.7 Score=28.66 Aligned_cols=78 Identities=8% Similarity=-0.051 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010202 113 DWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFD 192 (515)
Q Consensus 113 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 192 (515)
.-++|..+-+|+....+ ...+--.-+..+...|++++|..+.+.....+..+|-++ +-.+.|..+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~AL-----ce~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE---EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLAL-----CEYRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHH-----HHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHH-----HHHhcccHHHHHHHHH
Confidence 45667777777753221 222222334556677777777777765553333333333 4456677777777776
Q ss_pred HHhhCC
Q 010202 193 ELGTFG 198 (515)
Q Consensus 193 ~m~~~g 198 (515)
++...|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 776655
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.48 E-value=7 Score=31.05 Aligned_cols=57 Identities=9% Similarity=0.053 Sum_probs=35.2
Q ss_pred HHHHHHHcCCChHHHHHHHHHHhc-----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010202 139 MMVDILGKVRQMDQMRALLEEMSK-----GHIVT----LNTIAKVMRRFSGAGQWEDAVRTFDELG 195 (515)
Q Consensus 139 ~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 195 (515)
.-+..+...|.++.|+-+.+-+.. .+..+ ..++..+..++...|++.+|...|++..
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 345666777778777777666432 22212 2344555677777777777777777753
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=80.73 E-value=13 Score=26.46 Aligned_cols=86 Identities=23% Similarity=0.232 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 010202 322 DFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVL 401 (515)
Q Consensus 322 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 401 (515)
..++|..+-+.+...+. ...+--+-+..+.+.|++++|..+.+ ... .||...|-++-. .+.|..+++...+
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~-~~c----~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAH-GNP----WPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGT-TCC----CGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcC-CCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 45666666666655442 22222222355677888888887776 332 578888876643 4678888888888
Q ss_pred HHHHhCCCCCCCHHhHH
Q 010202 402 EEMNKLEHCKPNVQTFH 418 (515)
Q Consensus 402 ~~m~~~~~~~p~~~~~~ 418 (515)
.++...| .|....|.
T Consensus 92 ~~la~sg--~p~~q~Fa 106 (115)
T 2uwj_G 92 AGLGGSS--DPALADFA 106 (115)
T ss_dssp HHHHTCS--SHHHHHHH
T ss_pred HHHHhCC--CHHHHHHH
Confidence 7777776 56655554
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=80.19 E-value=14 Score=26.39 Aligned_cols=86 Identities=19% Similarity=0.200 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 010202 322 DFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVL 401 (515)
Q Consensus 322 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 401 (515)
..++|..+-+.+...+. ...+--+-+..+.+.|++++|..+.+ ... .||...|-++-. .+.|..+++...+
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~-~~c----~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGN-KLA----YPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHT-TSC----CGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcC-CCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 35666666666655442 22222222355677888888888776 333 578887776643 3567777777777
Q ss_pred HHHHhCCCCCCCHHhHH
Q 010202 402 EEMNKLEHCKPNVQTFH 418 (515)
Q Consensus 402 ~~m~~~~~~~p~~~~~~ 418 (515)
.++...| .|....|.
T Consensus 93 ~~la~sg--~p~~q~Fa 107 (116)
T 2p58_C 93 NRLARSQ--DPRIQTFV 107 (116)
T ss_dssp HHHTTCC--CHHHHHHH
T ss_pred HHHHhCC--CHHHHHHH
Confidence 7777766 56555554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 515 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 8e-05 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.4 bits (98), Expect = 8e-05
Identities = 24/245 (9%), Positives = 67/245 (27%), Gaps = 6/245 (2%)
Query: 88 KQDHVCNAIQPSHYLVNKLIHRFKDDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKV 147
+ + L+ ++ + + P + + + + G++
Sbjct: 126 SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEI 185
Query: 148 RQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMN 207
+ + + V++ A ++ AV + + +
Sbjct: 186 WLAIHHFEKAVTLDPNFLDAYINLGNVLKE---ARIFDRAVAAYLRALSLS-PNHAVVHG 241
Query: 208 LLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHG 267
L ++G ++LA + P + + + V EA+
Sbjct: 242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301
Query: 268 CHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAI 327
+ Q N + L + P ++ + S L + G +EA+
Sbjct: 302 PTHADSLN-NLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEAL 359
Query: 328 RITEK 332
++
Sbjct: 360 MHYKE 364
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 515 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.61 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.59 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.26 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.23 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.21 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.21 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.2 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.19 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.07 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.06 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.03 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.02 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.67 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.67 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.62 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.58 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.51 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.5 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.46 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.44 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.41 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.36 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.3 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.24 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.23 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.2 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.19 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.19 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.1 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.01 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.94 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.89 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.83 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.81 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.79 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.76 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.76 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.74 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.71 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.67 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.65 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.62 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.62 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.55 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.53 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.52 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.36 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.33 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.15 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.13 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.69 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.62 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.77 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.52 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.88 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.34 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.51 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 92.58 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 91.19 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 90.88 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 90.86 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 88.52 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=6.9e-21 Score=180.63 Aligned_cols=374 Identities=12% Similarity=0.098 Sum_probs=299.8
Q ss_pred hCHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010202 112 DDWKSALGIFRWAGSCPGYEHSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTF 191 (515)
Q Consensus 112 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 191 (515)
|+++.|...+..+... .|.++.++..+...|.+.|++++|...|+++.+.++.+..++..+...|.+.|++++|++.+
T Consensus 13 G~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~ 90 (388)
T d1w3ba_ 13 GDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHY 90 (388)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccccccc
Confidence 6888999999888633 24568888889999999999999999999998888888888888899999999999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCcc
Q 010202 192 DELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPC 271 (515)
Q Consensus 192 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 271 (515)
....+.. +.+..............+....+............................+....+...+....... +.+
T Consensus 91 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 168 (388)
T d1w3ba_ 91 RHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNF 168 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTC
T ss_pred ccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccC-cch
Confidence 8888764 44555555555566666666666666655444445566666777777788888888888888876653 335
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 010202 272 VISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYT 351 (515)
Q Consensus 272 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 351 (515)
...+..+...+...|++++|...+++..+.. +-+..++..+...+...|++++|...+....... +.+...+..+...
T Consensus 169 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 246 (388)
T d1w3ba_ 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACV 246 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHH
Confidence 6778888889999999999999999888753 2356788888999999999999999999988865 5667788888899
Q ss_pred HHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChH
Q 010202 352 LGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTD 431 (515)
Q Consensus 352 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~ 431 (515)
|.+.|++++|...|+ ...+.. +.+...|..+...+...|++++|++.++...... +.+...+..+...+...|+++
T Consensus 247 ~~~~~~~~~A~~~~~-~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 322 (388)
T d1w3ba_ 247 YYEQGLIDLAIDTYR-RAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHTTCHHHHHHHHH-HHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHCCCHHHHHHHHH-HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC--CccchhhhHHHHHHHHCCCHH
Confidence 999999999999998 554432 2357788889999999999999999999988864 667788888889999999999
Q ss_pred HHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 010202 432 ECLSQLLDDMVNKHHLSL-DITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPR-YQTCRLILDEVKQKHM 501 (515)
Q Consensus 432 ~A~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~ 501 (515)
+|+ ..+++..+ ..| +...|..+..+|.+.|++++|.+.|++.++ +.|+ ...|..+...+.+.||
T Consensus 323 ~A~-~~~~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 323 EAV-RLYRKALE---VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHH-HHHHHHTT---SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred HHH-HHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence 999 89988876 344 467788899999999999999999999986 5564 5678888888877775
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.3e-20 Score=178.68 Aligned_cols=363 Identities=9% Similarity=0.001 Sum_probs=298.8
Q ss_pred HHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 010202 140 MVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKV 219 (515)
Q Consensus 140 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 219 (515)
+...+.+.|++++|.+.|+++.+.+|.+..++..+...|.+.|++++|+..|++..+.. +-+..++..+..+|...|++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccc
Confidence 45667788999999999999999888889999999999999999999999999998764 44678899999999999999
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010202 220 ELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQ 299 (515)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 299 (515)
++|...+.......+.+..............+....+........... .................+....+...+....
T Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhh
Confidence 999999999766667777777777777777788877777777665543 2344555666667778888888888888877
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHH
Q 010202 300 AQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTS 379 (515)
Q Consensus 300 ~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 379 (515)
... +.+..++..+...+...|+++.|...+.+..+.. +.+...+..+...+...|++++|...++ ...... ..+..
T Consensus 163 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~-~~~~~~-~~~~~ 238 (388)
T d1w3ba_ 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYL-RALSLS-PNHAV 238 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHH-HHHHHC-TTCHH
T ss_pred ccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHH-HhHHHh-hhHHH
Confidence 653 3356788888889999999999999999988764 4567788899999999999999999998 554433 34677
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 010202 380 TFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIH 459 (515)
Q Consensus 380 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~ 459 (515)
.+..+...+.+.|++++|++.|++..+.. +-+..++..+...+...|++++|+ ..++..... .+.+...+..+..
T Consensus 239 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~--~~~~~~~~~~l~~ 313 (388)
T d1w3ba_ 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAE-DCYNTALRL--CPTHADSLNNLAN 313 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHH-HHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHH-HHHHhhhcc--CCccchhhhHHHH
Confidence 88888999999999999999999998854 345678888999999999999999 888888773 3446778888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010202 460 GLCRANKCEWAYLLFKEMIGHDITPR-YQTCRLILDEVKQKHMYDAAEKIEAVMKKL 515 (515)
Q Consensus 460 ~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~l 515 (515)
.+.+.|++++|++.+++.++ +.|+ ..++..+...+...|++++|++.+++..++
T Consensus 314 ~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 314 IKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999886 4554 567777888889999999999999887653
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=5.8e-13 Score=122.23 Aligned_cols=270 Identities=10% Similarity=-0.024 Sum_probs=161.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCCh
Q 010202 209 LLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNF 288 (515)
Q Consensus 209 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 288 (515)
....+.+.|++++|+..|+++.+..|.+..+|..+..+|...|++++|...|++..+.. +-+...|..+...|...|++
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccccc
Confidence 44556677777777777777555556667777777777777777777777777766543 23456666677777777777
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 010202 289 SKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVE 368 (515)
Q Consensus 289 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 368 (515)
++|++.+++..... |+............. ..+.......+..+...+...+|...|...
T Consensus 104 ~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 162 (323)
T d1fcha_ 104 RQACEILRDWLRYT--PAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKELFLAA 162 (323)
T ss_dssp HHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHhc--cchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHHHHHH
Confidence 77777777766542 221110000000000 000000111112233445566666666622
Q ss_pred chhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCC
Q 010202 369 MPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLS 448 (515)
Q Consensus 369 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 448 (515)
+.......+...+..+...+...|++++|+..|++..... +-+...+..+...+...|++++|+ +.+++..+. .
T Consensus 163 l~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~---~ 236 (323)
T d1fcha_ 163 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAV-AAYRRALEL---Q 236 (323)
T ss_dssp HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHH---C
T ss_pred HHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc--cccccchhhhhhcccccccchhHH-HHHHHHHHH---h
Confidence 3332223456677777777888888888888888877743 334667777777888888888888 777777763 2
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----------CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010202 449 L-DITTYTLVIHGLCRANKCEWAYLLFKEMIGH----------DITPRYQTCRLILDEVKQKHMYDAAE 506 (515)
Q Consensus 449 p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----------~~~p~~~~~~~ll~~~~~~g~~~~a~ 506 (515)
| +...|..+..+|.+.|++++|++.|++.++. ........|..+-.++...|+.+.+.
T Consensus 237 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 237 PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3 4566777888888888888888888877651 11112234555555666666655443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=8.2e-13 Score=121.18 Aligned_cols=92 Identities=9% Similarity=-0.066 Sum_probs=74.5
Q ss_pred HHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 010202 139 MMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGK 218 (515)
Q Consensus 139 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 218 (515)
.....+.+.|++++|...|+++.+.+|.+..++..+..++...|++++|+..|.+..+.. +-+...+..+...|...|+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 345667788889999999988888888888888888888888899999988888887753 3367778888888888888
Q ss_pred HHHHHHHHHHhhc
Q 010202 219 VELARSVFLELKS 231 (515)
Q Consensus 219 ~~~a~~~~~~~~~ 231 (515)
+++|.+.++....
T Consensus 103 ~~~A~~~~~~~~~ 115 (323)
T d1fcha_ 103 QRQACEILRDWLR 115 (323)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccccccchhhHHH
Confidence 8888888887443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=1e-09 Score=99.33 Aligned_cols=216 Identities=6% Similarity=-0.008 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 010202 134 SEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAG-QWEDAVRTFDELGTFGLEKNTETMNLLLDT 212 (515)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 212 (515)
..+++.+...+.+.+.+++|+++++.+.+.+|.+..++.....++...| ++++|++.++...+.. +-+..+|..+...
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 4567777788888999999999999999999999999988888888766 5899999999988753 4478889999999
Q ss_pred HHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCC-----
Q 010202 213 LCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYN----- 287 (515)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----- 287 (515)
+.+.|++++|+..+..+....|.+..+|..+...+.+.|++++|+..++++.+.. +.+...|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhh
Confidence 9999999999999999776678889999999999999999999999999998865 3467788877777666555
Q ss_pred -hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHH
Q 010202 288 -FSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSK-PDSRFFNCLIYTLG 353 (515)
Q Consensus 288 -~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~ 353 (515)
+++|++.+.+..+.. +.+...|..+...+.. ...+++.+.++...+.... .+...+..++..|.
T Consensus 201 ~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 567888888877763 3366777766655544 4456777777777654322 34555556665553
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=1.3e-09 Score=98.66 Aligned_cols=194 Identities=8% Similarity=-0.017 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 010202 168 LNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEG-KVELARSVFLELKSCIPPNAHTFNIFIHG 246 (515)
Q Consensus 168 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 246 (515)
..++..+...+.+.+.+++|++.++++++.. +-+...|+....++...| ++++|+..++......|.+..+|+.+...
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHH
Confidence 3455556677788888999999999988853 346677788888887766 48899998888666667788889888888
Q ss_pred HHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----
Q 010202 247 WCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGD---- 322 (515)
Q Consensus 247 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---- 322 (515)
+.+.|++++|+..++++.+.. +.+...|..+...+.+.|++++|++.++++.+.+. .+..+|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p-~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCC-ccHHHHHHHHHHHHHccccchh
Confidence 889999999999999888764 44678888888888888999999999988887642 266677776666655554
Q ss_pred --HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010202 323 --FEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQ 366 (515)
Q Consensus 323 --~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 366 (515)
+++|.+.+....+.. +.+...|+.+...+... ..+++...++
T Consensus 200 ~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~-~~~~~~~~~~ 243 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDR-GLSKYPNLLN 243 (315)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTT-CGGGCHHHHH
T ss_pred hhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhc-ChHHHHHHHH
Confidence 466777676666653 44555555554444332 2344444444
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=7.1e-09 Score=95.31 Aligned_cols=267 Identities=10% Similarity=0.019 Sum_probs=126.8
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCC----HHHHH
Q 010202 138 EMMVDILGKVRQMDQMRALLEEMSKGHIVT-----LNTIAKVMRRFSGAGQWEDAVRTFDELGTFGL-EKN----TETMN 207 (515)
Q Consensus 138 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~ 207 (515)
......+...|++++|.+++++.....+.+ ..++..+...|...|++++|+..|++..+... .++ ...+.
T Consensus 16 ~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 95 (366)
T d1hz4a_ 16 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 95 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 334455667777777777777766544432 22444556677777777777777776643210 111 22344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhc-----CCCC---ChhhHHHHHHHHHccCChhHHHHHHHHHHhC----CCCccHhHH
Q 010202 208 LLLDTLCKEGKVELARSVFLELKS-----CIPP---NAHTFNIFIHGWCKINRVDEAQWTIQEMKGH----GCHPCVISY 275 (515)
Q Consensus 208 ~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~ 275 (515)
.+...+...|++..+...+..... ..+. ....+..+...+...|+++.+...+...... +......++
T Consensus 96 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 175 (366)
T d1hz4a_ 96 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 175 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHH
Confidence 455566666666666666655211 1111 1123444555566666666666666555432 111122334
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CCHHHHH
Q 010202 276 STIIQSYCRQYNFSKVYELLDEMQAQ--GCPPN----VVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSK---PDSRFFN 346 (515)
Q Consensus 276 ~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~ 346 (515)
......+...+++.++...+.+.... ..... ...+......+...|+++.|...+....+.... .....+.
T Consensus 176 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 255 (366)
T d1hz4a_ 176 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 255 (366)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 44445555556666555555543321 00111 122333334444555555555555544332111 1122333
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhch----hCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010202 347 CLIYTLGRASRVQEAVYVYQVEMP----ENGVAPD-TSTFNTMITMFSHHGHHEKAFHVLEEMN 405 (515)
Q Consensus 347 ~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 405 (515)
.+...|...|++++|...++ ... ..+..|+ ...+..+...|...|++++|.+.+++..
T Consensus 256 ~la~~~~~~g~~~~A~~~~~-~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 256 NIARAQILLGEFEPAEIVLE-ELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHH-HHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34445555555555555554 221 1111121 2234444445555555555555555443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=1.6e-08 Score=92.94 Aligned_cols=195 Identities=11% Similarity=0.028 Sum_probs=89.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhch---hCCCCC--CHHHHH
Q 010202 312 TVMSYLAKSGDFEEAIRITEKMKIVG----SKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMP---ENGVAP--DTSTFN 382 (515)
Q Consensus 312 ~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~--~~~~~~ 382 (515)
.+...+...|+++.+...+....... .......+......+...++...+...+..... ..+..+ ....+.
T Consensus 138 ~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~ 217 (366)
T d1hz4a_ 138 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 217 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHH
Confidence 33444445555555555555444321 111223333334444445555554444431110 111001 112334
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCCC--CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHc---CCCCCC-HHHHHH
Q 010202 383 TMITMFSHHGHHEKAFHVLEEMNKLEHCK--PNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNK---HHLSLD-ITTYTL 456 (515)
Q Consensus 383 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~--p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~~p~-~~~~~~ 456 (515)
.....+...|++++|...+.+........ .....+..+..++...|++++|. ..++..... .+..|+ ...+..
T Consensus 218 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~ 296 (366)
T d1hz4a_ 218 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAE-IVLEELNENARSLRLMSDLNRNLLL 296 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHhhcccChHHHHHHHH
Confidence 44455556666666666666655432001 11223344555666666666666 555554421 122222 335556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCC----CHHHHHHHHHHHHhcCCHHHHHH
Q 010202 457 VIHGLCRANKCEWAYLLFKEMIGH----DITP----RYQTCRLILDEVKQKHMYDAAEK 507 (515)
Q Consensus 457 li~~~~~~g~~~~A~~~~~~m~~~----~~~p----~~~~~~~ll~~~~~~g~~~~a~~ 507 (515)
+...|.+.|++++|.+.+++.++. |... .......++..+...+..+++.+
T Consensus 297 la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 297 LNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 666677777777777776665431 2110 12234445555556666555543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.20 E-value=5.1e-09 Score=94.54 Aligned_cols=187 Identities=11% Similarity=0.077 Sum_probs=86.0
Q ss_pred hHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010202 254 DEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKM 333 (515)
Q Consensus 254 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 333 (515)
++|..+|++..+...+.+...|...+......|++++|..+|+.+.+.........|...+..+.+.|+++.|.++|+.+
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 45555555555433333444455555555555555555555555554322222334555555555555555555555555
Q ss_pred HhcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC
Q 010202 334 KIVGSKPDSRFFNCLIYT-LGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKP 412 (515)
Q Consensus 334 ~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 412 (515)
.+.+ +.+...|...... +...|+.+.|..+|+ ..... .+.+...|...+..+...|+.++|..+|++..+..+..|
T Consensus 161 l~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e-~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFE-LGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHH-HHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHH-HHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 5443 2222222222221 222345555555555 32221 122344555555555555555555555555544321222
Q ss_pred C--HHhHHHHHHHHHhcCChHHHHHHHHHHHHHc
Q 010202 413 N--VQTFHPLLKSCFKTGKTDECLSQLLDDMVNK 444 (515)
Q Consensus 413 ~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 444 (515)
+ ...|...+.--...|+.+.+. .+.+++.+.
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~-~~~~r~~~~ 270 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASIL-KVEKRRFTA 270 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHH
Confidence 2 223444444444445555544 455554443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.19 E-value=4.8e-09 Score=94.72 Aligned_cols=188 Identities=10% Similarity=0.031 Sum_probs=144.8
Q ss_pred CHHHHHHHHHHhhc-CCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHH
Q 010202 218 KVELARSVFLELKS-CIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLD 296 (515)
Q Consensus 218 ~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 296 (515)
..++|..+|++... ..+.+...|...+..+.+.|+++.|..+|+++.+.........|...+....+.|+.++|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45778888888443 35566778888888999999999999999998876433234578899999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCC
Q 010202 297 EMQAQGCPPNVVTYTTVMSY-LAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVA 375 (515)
Q Consensus 297 ~m~~~g~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 375 (515)
.+.+.+.. +...|...... +...|+.+.|..+|+.+.+.. +.+...+...+..+.+.|+.+.|..+|+..+...+..
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 98876433 33444443332 344689999999999998863 6678889999999999999999999999444444344
Q ss_pred CC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010202 376 PD--TSTFNTMITMFSHHGHHEKAFHVLEEMNKL 407 (515)
Q Consensus 376 ~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 407 (515)
|+ ...|...+..-..+|+.+.+.++++++.+.
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 43 457888888878899999999999988773
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.07 E-value=2.1e-09 Score=94.47 Aligned_cols=197 Identities=11% Similarity=0.028 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 010202 134 SEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTL 213 (515)
Q Consensus 134 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 213 (515)
..++..+...|.+.|++++|++.|++..+.++.+..++..+..+|.+.|++++|++.|++..+.. +-+..++..+..++
T Consensus 37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 37 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHH
Confidence 45677778888889999999999999888888888888888889999999999999998888753 33566788888888
Q ss_pred HHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCC----hh
Q 010202 214 CKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYN----FS 289 (515)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----~~ 289 (515)
...|++++|...|+......|.+......+...+.+.+..+.+..+........ ++...++ ++..+..... .+
T Consensus 116 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KEQWGWN-IVEFYLGNISEQTLME 192 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CCSTHHH-HHHHHTTSSCHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--hhhhhhh-HHHHHHHHHHHHHHHH
Confidence 888999999988888544445566555555555566666555555555555432 2222222 2222221111 11
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010202 290 KVYELLDEMQAQGCPP-NVVTYTTVMSYLAKSGDFEEAIRITEKMKIV 336 (515)
Q Consensus 290 ~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 336 (515)
.+...+...... .| ...++..+...+...|++++|.+.|+.....
T Consensus 193 ~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 193 RLKADATDNTSL--AEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhc--CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 111111111110 11 1234555667777777888888777777764
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.06 E-value=8.5e-10 Score=101.14 Aligned_cols=257 Identities=5% Similarity=-0.138 Sum_probs=134.9
Q ss_pred HHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHH---HHH-------HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 010202 140 MVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKV---MRR-------FSGAGQWEDAVRTFDELGTFGLEKNTETMNLL 209 (515)
Q Consensus 140 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l---i~~-------~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 209 (515)
++....+.+..++|.++++.+.+.+|.++.+++.. +.. +...|.+++|+..++...+.. +.+...|..+
T Consensus 35 ~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~ 113 (334)
T d1dcea1 35 VFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHR 113 (334)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHh
Confidence 33333334445777778877777777665554321 222 222334566777776666542 3355555555
Q ss_pred HHHHHHcC--CHHHHHHHHHHhhcCCCCChhhHHH-HHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcC
Q 010202 210 LDTLCKEG--KVELARSVFLELKSCIPPNAHTFNI-FIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQY 286 (515)
Q Consensus 210 l~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 286 (515)
..++...+ ++++|...+.......+++...+.. ....+...+.+++|+..+++..... +-+...|+.+...+.+.|
T Consensus 114 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~ 192 (334)
T d1dcea1 114 CWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLH 192 (334)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHS
T ss_pred hHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 55555544 3666666666644444455555433 3355556667777777776666654 335566666666677777
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010202 287 NFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQ 366 (515)
Q Consensus 287 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 366 (515)
++++|...+....+. .|+ .......+...+..+++...+....... +++...+..+...+...|+.++|...+.
T Consensus 193 ~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 266 (334)
T d1dcea1 193 PQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQ 266 (334)
T ss_dssp CCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 666655444332221 011 1112223334444455555555554432 2333344444455555566666666665
Q ss_pred hhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010202 367 VEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNK 406 (515)
Q Consensus 367 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 406 (515)
...... +.+...|..+..++...|++++|++.+++..+
T Consensus 267 -~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 267 -ELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp -HHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred -HHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 322211 11234555555566666666666666666666
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.03 E-value=1e-08 Score=89.89 Aligned_cols=96 Identities=15% Similarity=-0.016 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHc
Q 010202 170 TIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCK 249 (515)
Q Consensus 170 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 249 (515)
++..+...|.+.|++++|++.|++..+.. +-++.+|..+..++.+.|++++|+..|++.....|.+..++..+..+|..
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH
Confidence 34444555666666666666666655532 22455555555556666666666666655443334445555555555555
Q ss_pred cCChhHHHHHHHHHHhC
Q 010202 250 INRVDEAQWTIQEMKGH 266 (515)
Q Consensus 250 ~g~~~~A~~~~~~~~~~ 266 (515)
.|++++|...|++..+.
T Consensus 118 ~g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQD 134 (259)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHhh
Confidence 55555555555555443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.02 E-value=1.2e-09 Score=100.04 Aligned_cols=230 Identities=7% Similarity=-0.068 Sum_probs=147.9
Q ss_pred CChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHH
Q 010202 251 NRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYN--FSKVYELLDEMQAQGCPPNVVTYT-TVMSYLAKSGDFEEAI 327 (515)
Q Consensus 251 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~~~~~~~~-~li~~~~~~g~~~~a~ 327 (515)
|++++|+..++...+.. +.+...|..+..++...++ +++|+..++.+.+.. +++...+. .....+...+.++.|+
T Consensus 87 ~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al 164 (334)
T d1dcea1 87 ALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEEL 164 (334)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHH
Confidence 44667777777776653 3356667666666666554 677888887777653 22444443 3335556677888888
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 010202 328 RITEKMKIVGSKPDSRFFNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKL 407 (515)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 407 (515)
..++.+.+.. +.+...|+.+...+.+.|++++|...+. ..... .|+ .......+...+..+++...+......
T Consensus 165 ~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~-~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~ 237 (334)
T d1dcea1 165 AFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGR-LPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLG 237 (334)
T ss_dssp HHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCS-SCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHH-HhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHh
Confidence 8888777765 4567777777788888887777665554 32221 111 112223344556667777777777775
Q ss_pred CCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 010202 408 EHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSL-DITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRY 486 (515)
Q Consensus 408 ~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 486 (515)
. +++...+..+...+...|+.++|+ ..+.+..+ ..| +...|..+..++.+.|++++|.+.+++..+ +.|+.
T Consensus 238 ~--~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~---~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~ 309 (334)
T d1dcea1 238 R--AEPLFRCELSVEKSTVLQSELESC-KELQELEP---ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMR 309 (334)
T ss_dssp C--CCCSSSCCCCHHHHHHHHHHHHHH-HHHHHHCT---TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGGG
T ss_pred C--cchhhHHHHHHHHHHHHhhHHHHH-HHHHHHHh---hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCccc
Confidence 4 445556666677777788888888 66666644 333 356777788888899999999999999886 56754
Q ss_pred H-HHHHHHHHHH
Q 010202 487 Q-TCRLILDEVK 497 (515)
Q Consensus 487 ~-~~~~ll~~~~ 497 (515)
. .|..+...+.
T Consensus 310 ~~y~~~L~~~~~ 321 (334)
T d1dcea1 310 AAYLDDLRSKFL 321 (334)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 4 4444433333
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.67 E-value=3.7e-07 Score=81.17 Aligned_cols=164 Identities=12% Similarity=0.030 Sum_probs=87.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----CCHHHHHH
Q 010202 278 IIQSYCRQYNFSKVYELLDEMQAQ----GCPP-NVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSK-----PDSRFFNC 347 (515)
Q Consensus 278 li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~ 347 (515)
....|...|++++|.+.|.+..+. +-.+ -..+|..+..+|.+.|++++|.+.+++..+.... ....++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 345677788888888888776542 1111 1346777777777888888888777766542111 11233444
Q ss_pred HHHHHH-hcCCHHHHHHHHHhhchh-CCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCH-----Hh
Q 010202 348 LIYTLG-RASRVQEAVYVYQVEMPE-NGVAPD----TSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNV-----QT 416 (515)
Q Consensus 348 li~~~~-~~g~~~~A~~~~~~~~~~-~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-----~~ 416 (515)
+...|. ..|++++|...++ ...+ .....+ ..++..+...+...|++++|++.|+++.......+.. ..
T Consensus 123 l~~~~~~~~~~~~~A~~~~~-~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~ 201 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYE-LAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHH-HHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHH
Confidence 444443 3466777766666 3322 111111 2235555666666666666666666665533111110 11
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHH
Q 010202 417 FHPLLKSCFKTGKTDECLSQLLDDMVN 443 (515)
Q Consensus 417 ~~~ll~~~~~~g~~~~A~~~~~~~~~~ 443 (515)
+...+..+...|+++.|. ..+++..+
T Consensus 202 ~~~~~~~~l~~~d~~~A~-~~~~~~~~ 227 (290)
T d1qqea_ 202 FLKKGLCQLAATDAVAAA-RTLQEGQS 227 (290)
T ss_dssp HHHHHHHHHHTTCHHHHH-HHHHGGGC
T ss_pred HHHHHHHHHHhccHHHHH-HHHHHHHH
Confidence 223333445566666665 56655544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=1.2e-06 Score=72.21 Aligned_cols=123 Identities=11% Similarity=-0.002 Sum_probs=76.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChh
Q 010202 175 MRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVD 254 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 254 (515)
...+...|++++|++.|.++ .+|+..++..+..+|...|++++|++.|++..+-.|.+...|..+..+|.+.|+++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHH
Confidence 34556667777777776653 24566666667777777777777777777644445566667777777777777777
Q ss_pred HHHHHHHHHHhCC------------C--Cc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 010202 255 EAQWTIQEMKGHG------------C--HP-CVISYSTIIQSYCRQYNFSKVYELLDEMQAQ 301 (515)
Q Consensus 255 ~A~~~~~~~~~~~------------~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 301 (515)
+|...|++..... . .+ ...++..+..++.+.|++++|.+.+....+.
T Consensus 88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 7777776655321 0 00 0234445566667777777777777766654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=9e-07 Score=66.30 Aligned_cols=103 Identities=11% Similarity=-0.055 Sum_probs=62.1
Q ss_pred HHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 010202 140 MVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKV 219 (515)
Q Consensus 140 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 219 (515)
-.+.+.+.|++++|+..|++....++.+...+..+..+|...|++++|++.+....+.+ +.+...|..+..++...|++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence 34555566666666666666666666666666666666666666666666666666543 34556666666666666666
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHH
Q 010202 220 ELARSVFLELKSCIPPNAHTFNIF 243 (515)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~l 243 (515)
++|+..|+......|.+...+..+
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~~l 111 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKEGL 111 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHH
Confidence 666666666444444444444433
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=3.8e-06 Score=69.06 Aligned_cols=127 Identities=9% Similarity=0.024 Sum_probs=87.1
Q ss_pred HHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCC
Q 010202 350 YTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGK 429 (515)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~ 429 (515)
..+...|+++.|.+.|. .+. +|+...|..+..+|...|++++|++.|++.++.. +-+...|..+..++.+.|+
T Consensus 13 ~~~~~~~d~~~Al~~~~-~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld--p~~~~a~~~~g~~~~~~g~ 85 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFS-AVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQTEK 85 (192)
T ss_dssp HHHHHTTCHHHHHHHHH-TSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHH-hcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh--hhhhhhHHHHHHHHHhhcc
Confidence 34566778888888877 543 3566777777888888888888888888887754 4446677777777888888
Q ss_pred hHHHHHHHHHHHHHcCCC-------------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 010202 430 TDECLSQLLDDMVNKHHL-------------SLD-ITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITP 484 (515)
Q Consensus 430 ~~~A~~~~~~~~~~~~~~-------------~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 484 (515)
+++|+ ..|++......- .++ ..++..+..++.+.|++++|.+.+++..+....|
T Consensus 86 ~~~A~-~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 86 YDLAI-KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHH-HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHH-HHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 88887 677776542110 011 2445567777888888888888888887543333
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=1.6e-06 Score=69.06 Aligned_cols=102 Identities=7% Similarity=-0.067 Sum_probs=62.3
Q ss_pred HHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH
Q 010202 140 MVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKV 219 (515)
Q Consensus 140 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 219 (515)
..+.|.+.|++++|...|++..+.++.++..+..+..+|...|++++|++.|+...+.. +.+..+|..+..++...|++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCH
Confidence 34555666666666666666666666666666666666666666666666666666543 33455666666666666666
Q ss_pred HHHHHHHHHhhcCCCCChhhHHH
Q 010202 220 ELARSVFLELKSCIPPNAHTFNI 242 (515)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~ 242 (515)
++|...+++.....|.+...+..
T Consensus 95 ~eA~~~~~~a~~~~p~~~~~~~~ 117 (159)
T d1a17a_ 95 RAALRDYETVVKVKPHDKDAKMK 117 (159)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHH
Confidence 66666666644333444444433
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.50 E-value=2.3e-06 Score=75.87 Aligned_cols=131 Identities=8% Similarity=0.001 Sum_probs=72.1
Q ss_pred HHHHHHHHH-ccCChhHHHHHHHHHHhC----CCCc-cHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-----CH-
Q 010202 240 FNIFIHGWC-KINRVDEAQWTIQEMKGH----GCHP-CVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPP-----NV- 307 (515)
Q Consensus 240 ~~~li~~~~-~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-----~~- 307 (515)
+..+...|. ..|++++|...+++..+. +-++ -..+|..+...+...|++++|++.|++........ ..
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 344444443 346777777776665421 1111 13446667777777778888877777766542111 11
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC---HHHHHHHHHHHHh--cCCHHHHHHHHHhhchh
Q 010202 308 VTYTTVMSYLAKSGDFEEAIRITEKMKIVGSK-PD---SRFFNCLIYTLGR--ASRVQEAVYVYQVEMPE 371 (515)
Q Consensus 308 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~---~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~ 371 (515)
..+...+..+...|+++.|.+.+++..+.... ++ ......++.++-. .+.+++|...|+ .+.+
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~-~~~~ 268 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFD-NFMR 268 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHT-TSSC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHhh
Confidence 12333444556677888888777777654211 11 2244556666554 345777877776 5443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.46 E-value=0.0004 Score=61.46 Aligned_cols=126 Identities=13% Similarity=0.112 Sum_probs=63.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChh
Q 010202 175 MRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVD 254 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 254 (515)
+..|.+.|.++.|..+|..+.. |..++..+.+.+++..|.+..... .+..+|..+...+.+.....
T Consensus 21 ~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~~ 86 (336)
T d1b89a_ 21 GDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFR 86 (336)
T ss_dssp --------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHHH
Confidence 4555566666666666665443 455666666666666666655443 24455666666665554443
Q ss_pred HHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 010202 255 EAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKS 320 (515)
Q Consensus 255 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 320 (515)
.+ .+.......+......++..|-..|.+++.+.+++..... -.++...++.++..|++.
T Consensus 87 la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 87 LA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 146 (336)
T ss_dssp HH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTT
T ss_pred HH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHh
Confidence 32 1112222233444455666666666666666666655432 233555566666666654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=5e-06 Score=62.06 Aligned_cols=91 Identities=18% Similarity=0.120 Sum_probs=57.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChh
Q 010202 175 MRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVD 254 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 254 (515)
...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..+.......|.+...|..+..++...|+++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 455666667777777776666543 3355666666666666666666666666644444556666666666666666666
Q ss_pred HHHHHHHHHHhC
Q 010202 255 EAQWTIQEMKGH 266 (515)
Q Consensus 255 ~A~~~~~~~~~~ 266 (515)
+|+..|++..+.
T Consensus 89 ~A~~~~~~a~~~ 100 (117)
T d1elwa_ 89 EAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 666666666654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.41 E-value=6.6e-07 Score=74.52 Aligned_cols=96 Identities=9% Similarity=-0.074 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 010202 132 HSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLD 211 (515)
Q Consensus 132 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 211 (515)
|+...+....+.|.+.|++++|+..|++....+|.+..++..+..+|.+.|++++|+..|+...+.. +-+..+|..+..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHHH
Confidence 4555555666666677777777777776666666666666666666777777777777776666532 224556666666
Q ss_pred HHHHcCCHHHHHHHHHH
Q 010202 212 TLCKEGKVELARSVFLE 228 (515)
Q Consensus 212 ~~~~~~~~~~a~~~~~~ 228 (515)
+|...|++++|...|++
T Consensus 81 ~~~~l~~~~~A~~~~~~ 97 (201)
T d2c2la1 81 CQLEMESYDEAIANLQR 97 (201)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 66666666666666665
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=7e-06 Score=65.18 Aligned_cols=91 Identities=7% Similarity=-0.057 Sum_probs=60.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChh
Q 010202 175 MRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVD 254 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 254 (515)
...|.+.|++++|+..|.+..+.. +-+...|..+..+|...|++++|...|+...+..|.+..+|..+..++...|+++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence 456667777777777777776653 3356666666667777777777777776654444556666766777777777777
Q ss_pred HHHHHHHHHHhC
Q 010202 255 EAQWTIQEMKGH 266 (515)
Q Consensus 255 ~A~~~~~~~~~~ 266 (515)
+|...+++....
T Consensus 96 eA~~~~~~a~~~ 107 (159)
T d1a17a_ 96 AALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 777777666654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.30 E-value=5.8e-06 Score=68.51 Aligned_cols=95 Identities=11% Similarity=-0.066 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHH
Q 010202 169 NTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWC 248 (515)
Q Consensus 169 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 248 (515)
+.+......|.+.|++++|+..|.+..+.. +.+...|..+..+|.+.|++++|+..|+....-.|.+..+|..+..+|.
T Consensus 5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~ 83 (201)
T d2c2la1 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 334444555555555555555555554432 2344555555555555555555555555544333444555555555555
Q ss_pred ccCChhHHHHHHHHHH
Q 010202 249 KINRVDEAQWTIQEMK 264 (515)
Q Consensus 249 ~~g~~~~A~~~~~~~~ 264 (515)
+.|++++|...|++..
T Consensus 84 ~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 84 EMESYDEAIANLQRAY 99 (201)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5555555555555443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.24 E-value=0.0011 Score=56.92 Aligned_cols=222 Identities=12% Similarity=0.041 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhhcCCCCChhhHHHHH
Q 010202 169 NTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCK----EGKVELARSVFLELKSCIPPNAHTFNIFI 244 (515)
Q Consensus 169 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~li 244 (515)
.++..|...+.+.+++++|+++|++..+.| +...+..|...|.. ..+...+...+...... .+......+.
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l~ 77 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLLG 77 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhccc
Confidence 344444445555555555555555555543 33444444444443 33455555555542221 1222233333
Q ss_pred HHHHc----cCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010202 245 HGWCK----INRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCR----QYNFSKVYELLDEMQAQGCPPNVVTYTTVMSY 316 (515)
Q Consensus 245 ~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 316 (515)
..+.. ..+.+.|...++...+.|. ......+...+.. ......+...+......+ +...+..+...
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~~~ 151 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 151 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhhhhh
Confidence 33222 3455556666666555541 1222222222221 233445555555544432 44455555555
Q ss_pred HHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHH
Q 010202 317 LAK----SGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGR----ASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMF 388 (515)
Q Consensus 317 ~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 388 (515)
+.. ..+...+...++...+.| +......+...|.. ..++++|...|. ...+.| ++..+..|...|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~-~aa~~g---~~~a~~~LG~~y 224 (265)
T d1ouva_ 152 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYS-KACELE---NGGGCFNLGAMQ 224 (265)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHH-HHHHTT---CHHHHHHHHHHH
T ss_pred hccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHh-hhhccc---CHHHHHHHHHHH
Confidence 543 334555666665555533 33444444444443 346677777776 444433 344555555555
Q ss_pred Hh----CCCHHHHHHHHHHHHhCC
Q 010202 389 SH----HGHHEKAFHVLEEMNKLE 408 (515)
Q Consensus 389 ~~----~g~~~~A~~~~~~m~~~~ 408 (515)
.+ ..+.++|.++|++..+.|
T Consensus 225 ~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 225 YNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HcCCCCccCHHHHHHHHHHHHHCc
Confidence 53 235666777777766655
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.23 E-value=0.0012 Score=56.69 Aligned_cols=222 Identities=9% Similarity=-0.046 Sum_probs=110.4
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 010202 238 HTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCR----QYNFSKVYELLDEMQAQGCPPNVVTYTTV 313 (515)
Q Consensus 238 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 313 (515)
..+..|...+.+.+++++|++.|++..+.| +...+..|...|.. ..+...|..++......+ +......+
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l 76 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 76 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhcc
Confidence 344444445555555555555555555544 33444444444443 344555555555555443 22223333
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHhhchhCCCCCCHHHHHHHH
Q 010202 314 MSYLAK----SGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLG----RASRVQEAVYVYQVEMPENGVAPDTSTFNTMI 385 (515)
Q Consensus 314 i~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 385 (515)
...+.. ..+.+.|...++...+.|. ......+...+. .......+...+. .... ..+...+..+.
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~-~~~~---~~~~~~~~~L~ 149 (265)
T d1ouva_ 77 GNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFT-KACD---LNDGDGCTILG 149 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHH-HHHH---TTCHHHHHHHH
T ss_pred ccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhh-hhhc---ccccchhhhhh
Confidence 322222 3445556666665555442 111112222222 2334555555554 3222 23455555555
Q ss_pred HHHHh----CCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHh----cCChHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 010202 386 TMFSH----HGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFK----TGKTDECLSQLLDDMVNKHHLSLDITTYTLV 457 (515)
Q Consensus 386 ~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~l 457 (515)
..|.. ..+...+..+++...+.| +......+...+.. ..+.++|+ ..|.+..+ .| ++..+..|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~a~~~g----~~~A~~~lg~~y~~g~~~~~d~~~A~-~~~~~aa~-~g---~~~a~~~L 220 (265)
T d1ouva_ 150 SLYDAGRGTPKDLKKALASYDKACDLK----DSPGCFNAGNMYHHGEGATKNFKEAL-ARYSKACE-LE---NGGGCFNL 220 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTCSSCCCHHHHH-HHHHHHHH-TT---CHHHHHHH
T ss_pred hhhccCCCcccccccchhhhhcccccc----ccccccchhhhcccCcccccchhhhh-hhHhhhhc-cc---CHHHHHHH
Confidence 55553 345556666666666543 33333334333433 45677777 77777766 33 44455556
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhCC
Q 010202 458 IHGLCR----ANKCEWAYLLFKEMIGHD 481 (515)
Q Consensus 458 i~~~~~----~g~~~~A~~~~~~m~~~~ 481 (515)
...|.+ ..+.++|.++|++..+.|
T Consensus 221 G~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 221 GAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 666654 336777888877776655
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.20 E-value=6.4e-06 Score=60.88 Aligned_cols=87 Identities=8% Similarity=-0.034 Sum_probs=46.1
Q ss_pred HHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHH
Q 010202 141 VDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVE 220 (515)
Q Consensus 141 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 220 (515)
...+.+.|++++|...|++....++.+..++..+..++.+.|++++|+..|++..+.. +.+...+..+...|...|+++
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~~ 101 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNAN 101 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCHH
Confidence 3344455555555555555555555555555555555555555555555555555432 224455555555555555555
Q ss_pred HHHHHHHH
Q 010202 221 LARSVFLE 228 (515)
Q Consensus 221 ~a~~~~~~ 228 (515)
+|.+.+++
T Consensus 102 ~A~~~l~~ 109 (112)
T d1hxia_ 102 AALASLRA 109 (112)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.19 E-value=6.4e-06 Score=60.88 Aligned_cols=88 Identities=11% Similarity=0.025 Sum_probs=51.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChh
Q 010202 175 MRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVD 254 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 254 (515)
...+.+.|++++|+..|++..+.. +-+...|..+..++.+.|++++|+..|++.....|.+..+|..+...|...|+++
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~ 101 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNAN 101 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHH
Confidence 445556666666666666665542 2245566666666666666666666666644444555666666666666666666
Q ss_pred HHHHHHHHH
Q 010202 255 EAQWTIQEM 263 (515)
Q Consensus 255 ~A~~~~~~~ 263 (515)
+|.+.+++.
T Consensus 102 ~A~~~l~~~ 110 (112)
T d1hxia_ 102 AALASLRAW 110 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665553
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=6.1e-06 Score=61.85 Aligned_cols=102 Identities=14% Similarity=0.068 Sum_probs=67.4
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhCCCCCC-HHHHHHHHHHH
Q 010202 138 EMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQ---WEDAVRTFDELGTFGLEKN-TETMNLLLDTL 213 (515)
Q Consensus 138 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~~~-~~~~~~ll~~~ 213 (515)
..+++.+...+++++|++.|+.....++.+..++..+..++.+.++ +++|+++|+++...+..|+ ..++..+..+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 3566667777777888888887777777777777777777766444 3457777777766432232 23556677777
Q ss_pred HHcCCHHHHHHHHHHhhcCCCCChhh
Q 010202 214 CKEGKVELARSVFLELKSCIPPNAHT 239 (515)
Q Consensus 214 ~~~~~~~~a~~~~~~~~~~~~~~~~~ 239 (515)
.+.|++++|++.|+++....|.+...
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~P~~~~A 108 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTEPQNNQA 108 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHhhhHHHHHHHHHHHHhCcCCHHH
Confidence 77777777777777754433444433
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=1.3e-05 Score=59.97 Aligned_cols=94 Identities=10% Similarity=0.033 Sum_probs=55.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCC---hhHHHHHHHHHHhCCCCcc-HhHHHHHHHHHH
Q 010202 208 LLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINR---VDEAQWTIQEMKGHGCHPC-VISYSTIIQSYC 283 (515)
Q Consensus 208 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~ 283 (515)
.+++.+...+++++|++.|+......|.+..++..+..++.+.++ +++|+.+|+++...+..|+ ..+|..+..+|.
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 455566666666666666666444455566666666666665443 3346666666655432222 225556666666
Q ss_pred hcCChhHHHHHHHHHHHC
Q 010202 284 RQYNFSKVYELLDEMQAQ 301 (515)
Q Consensus 284 ~~g~~~~A~~~~~~m~~~ 301 (515)
+.|++++|++.|+++.+.
T Consensus 84 ~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHh
Confidence 667777777766666654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=7.3e-05 Score=56.47 Aligned_cols=104 Identities=10% Similarity=0.157 Sum_probs=74.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCC-----HHHHH
Q 010202 381 FNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLD-----ITTYT 455 (515)
Q Consensus 381 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~-----~~~~~ 455 (515)
+..+...+.+.|++++|++.|.+.++.+ +.+...+..+..+|.+.|++++|+ ..++++++...-.+. ..+|.
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~-~~~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCR-ELCEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHhHHHHHHHcCchHHHH-HHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4456677888888888888888888864 455777888888888888888888 777777652211112 23566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010202 456 LVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTC 489 (515)
Q Consensus 456 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 489 (515)
.+...+...+++++|++.+++... ..|+....
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~ 115 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVL 115 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHh--cCCCHHHH
Confidence 777788888889999998888775 34555443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.94 E-value=0.00011 Score=58.58 Aligned_cols=62 Identities=11% Similarity=-0.112 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 010202 205 TMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGH 266 (515)
Q Consensus 205 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 266 (515)
+|+.+..+|.+.|++++|+..++......|.++.++..+..+|...|++++|...|++..+.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34445556666666666666666644334555666666666666666666666666666554
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.89 E-value=0.00029 Score=56.10 Aligned_cols=60 Identities=8% Similarity=-0.062 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010202 345 FNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNK 406 (515)
Q Consensus 345 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 406 (515)
|+.+..+|.+.|++++|...++ ...... +.++..|..+..+|...|++++|+..|++..+
T Consensus 65 ~~nla~~y~k~~~~~~A~~~~~-~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 65 HLNLAMCHLKLQAFSAAIESCN-KALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH-HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccccchhh-hhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445555556666666666665 332221 12455555556666666666666666666655
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.83 E-value=0.00012 Score=58.43 Aligned_cols=79 Identities=13% Similarity=0.063 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHH
Q 010202 203 TETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSY 282 (515)
Q Consensus 203 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 282 (515)
...+..+..++.+.|++++|+..+.......|.+..+|..+..+|.+.|++++|...|++..+.. +.+......+..+.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34455566666667777777777766555455666667777777777777777777777666543 22344444444443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=1.9e-06 Score=82.70 Aligned_cols=209 Identities=10% Similarity=-0.043 Sum_probs=109.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH--HHH
Q 010202 137 YEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLD--TLC 214 (515)
Q Consensus 137 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~--~~~ 214 (515)
+..+..+|...|++++| ++++...++....... +....-...+..+.+.++...+....++..-....+. ...
T Consensus 23 ~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~--~e~~Lw~~~y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~ 97 (497)
T d1ya0a1 23 KLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKK--VEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEA 97 (497)
T ss_dssp SSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHT--HHHHHHHHHTHHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHh--HHHHHHHHHHHHHHHHHHHhcccccCccHHHHHHHHHHHHHH
Confidence 33445556666666655 5555444432222211 1111111124456677776665443333322222111 122
Q ss_pred HcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHH
Q 010202 215 KEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYEL 294 (515)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 294 (515)
..+.++.++..+...-...+++...+..+...+.+.|+.++|...++...... ...++..+...+...|++++|+..
T Consensus 98 a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~ 174 (497)
T d1ya0a1 98 ASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESY 174 (497)
T ss_dssp HHHHHHHHHHHHTC-------------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHH
Confidence 23445555554444222345667778888888999999999988887765421 235677788899999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 010202 295 LDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIYTLGRA 355 (515)
Q Consensus 295 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 355 (515)
|++..+.. +-+..+|+.+...+...|+..+|...|.+..... +|-..++..|...+.+.
T Consensus 175 y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 175 YRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHh
Confidence 99988763 3356889999999999999999999999998875 67788888888777543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.79 E-value=0.0098 Score=52.28 Aligned_cols=144 Identities=14% Similarity=0.119 Sum_probs=93.1
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 010202 132 HSSEIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLD 211 (515)
Q Consensus 132 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 211 (515)
+|..-...+.+.|-+.|.++.|..++..+. ++ ..++..+.+.++++.|.+.+.+. -+..+|..+..
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~-----d~---~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~ 77 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NF---GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCF 77 (336)
T ss_dssp C----------------CTTTHHHHHHHTT-----CH---HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC-----CH---HHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHH
Confidence 344455667888889999999999998652 33 44478899999999999888654 36778888898
Q ss_pred HHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHH
Q 010202 212 TLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKV 291 (515)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 291 (515)
.+.+......+.. .......+......++..|-..|.+++...+++...... .++...++.++..|++.+ .++.
T Consensus 78 ~l~~~~e~~la~i----~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~-~~kl 151 (336)
T d1b89a_ 78 ACVDGKEFRLAQM----CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKM 151 (336)
T ss_dssp HHHHTTCHHHHHH----TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-HHHH
T ss_pred HHHhCcHHHHHHH----HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC-hHHH
Confidence 9888877655422 122233455666789999999999999999999876542 456778888999888764 3444
Q ss_pred HHHH
Q 010202 292 YELL 295 (515)
Q Consensus 292 ~~~~ 295 (515)
.+.+
T Consensus 152 ~e~l 155 (336)
T d1b89a_ 152 REHL 155 (336)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.76 E-value=0.00023 Score=56.62 Aligned_cols=107 Identities=8% Similarity=-0.093 Sum_probs=60.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhc---CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 010202 136 IYEMMVDILGKVRQMDQMRALLEEMSK---GHI-VTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLD 211 (515)
Q Consensus 136 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 211 (515)
.+....+.+.+.|++++|...|++... ... ..... ......+ ....|+.+..
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~-----------------~~~~~~~-------~~~~~~Nla~ 72 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKE-----------------SKASESF-------LLAAFLNLAM 72 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHH-----------------HHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhh-----------------hhhcchh-------HHHHHHhHHH
Confidence 445566777888888888888877543 111 11000 0000000 1223444555
Q ss_pred HHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 010202 212 TLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGH 266 (515)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 266 (515)
+|.+.|++++|+..++......|.+..+|..+..++...|++++|...|++....
T Consensus 73 ~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 73 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666644444556666666666666666666666666666654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=0.00034 Score=52.61 Aligned_cols=58 Identities=16% Similarity=0.271 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010202 276 STIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMK 334 (515)
Q Consensus 276 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 334 (515)
..+...+.+.|++++|++.|.+..+.+ +.+..++..+..+|.+.|++++|.+.+++++
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 65 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence 334444444555555555555444432 1234444444444445555555554444443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.74 E-value=0.00028 Score=55.06 Aligned_cols=62 Identities=10% Similarity=-0.108 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 010202 205 TMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGH 266 (515)
Q Consensus 205 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 266 (515)
+|..+..+|.+.|++++|+..+.......|.+..+|..+..++...|++++|...|++..+.
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45556666777777777777777644445666677777777777777777777777776664
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.71 E-value=0.0005 Score=53.52 Aligned_cols=110 Identities=8% Similarity=-0.064 Sum_probs=77.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCC---CCCC-----------HHhHHHHHHHHHhcCChHHHHHHHHHHHHHcCC
Q 010202 381 FNTMITMFSHHGHHEKAFHVLEEMNKLEH---CKPN-----------VQTFHPLLKSCFKTGKTDECLSQLLDDMVNKHH 446 (515)
Q Consensus 381 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~p~-----------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 446 (515)
+......+.+.|++++|+..|.+..+.-. ..++ ..+|..+..+|.+.|++++|+ +.++...+..
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al-~~~~~al~~~- 97 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAI-DHASKVLKID- 97 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHS-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhh-hhhhcccccc-
Confidence 34445556667777777777776654210 0111 235667788889999999999 8888888732
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010202 447 LSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDE 495 (515)
Q Consensus 447 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 495 (515)
+.+...|..+..++...|++++|...|++..+ +.|+.......+..
T Consensus 98 -p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~~~~~~l~~ 143 (153)
T d2fbna1 98 -KNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNSYEL 143 (153)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHH
T ss_pred -chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 23678899999999999999999999999986 56765544444443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.67 E-value=0.00038 Score=55.72 Aligned_cols=70 Identities=9% Similarity=0.026 Sum_probs=39.0
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHH
Q 010202 239 TFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQA-----QGCPPNVVT 309 (515)
Q Consensus 239 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~ 309 (515)
.+..+...+.+.|++++|...++++.... +-+...|..++.+|.+.|+..+|++.|+++.+ .|+.|...+
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 44555555666666666666666655543 33455566666666666666666666655432 355665443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.65 E-value=0.00035 Score=55.51 Aligned_cols=126 Identities=10% Similarity=0.041 Sum_probs=84.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChh
Q 010202 175 MRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVD 254 (515)
Q Consensus 175 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 254 (515)
...+.+.|++++|++.|.+..+. ............. ....+.+...+..+..++.+.|+++
T Consensus 34 ~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~-------~~~~~~~~~~~~nla~~~~~~~~~~ 94 (169)
T d1ihga1 34 GNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADG-------AKLQPVALSCVLNIGACKLKMSDWQ 94 (169)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHH-------GGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHH-------HHhChhhHHHHHHHHHHHHhhcccc
Confidence 55677788888888888776531 1111111111111 0111234567778888999999999
Q ss_pred HHHHHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 010202 255 EAQWTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSG 321 (515)
Q Consensus 255 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 321 (515)
+|+..+++..+.. +.+..+|..+..++...|++++|++.|+...+.. +.+..+...+..+..+..
T Consensus 95 ~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~~~~l~ 159 (169)
T d1ihga1 95 GAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIK 159 (169)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHH
Confidence 9999999998865 4567789999999999999999999999988863 225555655555544433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.62 E-value=0.00071 Score=53.57 Aligned_cols=60 Identities=12% Similarity=-0.031 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010202 345 FNCLIYTLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNK 406 (515)
Q Consensus 345 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 406 (515)
|+.+..+|.+.|++++|...++ ...... +.+...|..+..++...|++++|+..|.++.+
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~-~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCD-KALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH-HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHhhhcccchhhhh-hhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444455555556665555555 332221 23445555555555566666666666666555
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.62 E-value=0.00065 Score=54.32 Aligned_cols=74 Identities=15% Similarity=0.154 Sum_probs=62.6
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCHHHHH
Q 010202 272 VISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKI-----VGSKPDSRFFN 346 (515)
Q Consensus 272 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 346 (515)
...+..+...+...|++++|+..++.+.... +-+...|..++.++.+.|+.++|++.|+++.+ .|+.|+..+-.
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~ 145 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 145 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHH
Confidence 4567888999999999999999999998864 44788999999999999999999999998744 58899876543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.55 E-value=8.6e-05 Score=63.79 Aligned_cols=121 Identities=8% Similarity=-0.119 Sum_probs=75.1
Q ss_pred HHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCHHHH
Q 010202 144 LGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKN-TETMNLLLDTLCKEGKVELA 222 (515)
Q Consensus 144 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~a 222 (515)
..+.|++++|+..+++..+.+|.+......++..|+..|++++|++.|+...+. .|+ ...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHHH
Confidence 346788888888888888888888888888888888888888888888888774 343 34444444443332222222
Q ss_pred HHHHHH-hhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 010202 223 RSVFLE-LKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGH 266 (515)
Q Consensus 223 ~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 266 (515)
..-... ...+.+++...+......+...|+.++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 111111 00111223333444455666777788887777776654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.53 E-value=8e-05 Score=64.00 Aligned_cols=122 Identities=14% Similarity=0.094 Sum_probs=62.2
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHH
Q 010202 178 FSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQ 257 (515)
Q Consensus 178 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 257 (515)
..+.|++++|+..+++..+.. +.|...+..+...++..|++++|.+.++......|.+...+..+...+...+..+++.
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence 345677777777777766653 3466666777777777777777777776644433444444444444433222222221
Q ss_pred HHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010202 258 WTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQA 300 (515)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 300 (515)
.-...-...+-+++...+......+...|+.++|.++++++.+
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e 127 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 1111101111112223333344455556666666666666554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.52 E-value=7.7e-05 Score=57.72 Aligned_cols=37 Identities=11% Similarity=0.122 Sum_probs=24.0
Q ss_pred HcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 010202 145 GKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGA 181 (515)
Q Consensus 145 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 181 (515)
-+.+.+++|++.|+...+.+|.+..++..+..++...
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~ 44 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLEL 44 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHh
Confidence 3445567777777777777777777766666665543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.36 E-value=0.00038 Score=53.64 Aligned_cols=36 Identities=6% Similarity=-0.031 Sum_probs=19.4
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 010202 179 SGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCK 215 (515)
Q Consensus 179 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 215 (515)
-+.+.+++|++.|+...+.. +.+..++..+..++..
T Consensus 8 ~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~ 43 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLE 43 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHH
Confidence 34455666666666665543 3355555555555543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.33 E-value=0.00032 Score=66.71 Aligned_cols=136 Identities=8% Similarity=-0.026 Sum_probs=74.7
Q ss_pred CCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010202 147 VRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVF 226 (515)
Q Consensus 147 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 226 (515)
.+.++.|...+......++.....+..+...+.+.|+.++|...+....... ...++..+...+...|++++|...|
T Consensus 99 ~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y 175 (497)
T d1ya0a1 99 SGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYY 175 (497)
T ss_dssp HHHHHHHHHHHTC-------------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHH
Confidence 4455566555555444455555666666777778888888877776654321 1345666788888888888888888
Q ss_pred HHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHhcC
Q 010202 227 LELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCRQY 286 (515)
Q Consensus 227 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 286 (515)
.+.....|.+...|+.|...+...|+..+|...|.+..... +|-..++..|...+.+..
T Consensus 176 ~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 176 RHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHhh
Confidence 88666667778888888888888888888888888887764 456677777777765543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.15 E-value=0.005 Score=47.71 Aligned_cols=100 Identities=16% Similarity=0.112 Sum_probs=65.0
Q ss_pred HHHHHH--HHHHHhCCCHHHHHHHHHHHHhCCCCCCC----------HHhHHHHHHHHHhcCChHHHHHHHHHHHHHcC-
Q 010202 379 STFNTM--ITMFSHHGHHEKAFHVLEEMNKLEHCKPN----------VQTFHPLLKSCFKTGKTDECLSQLLDDMVNKH- 445 (515)
Q Consensus 379 ~~~~~l--i~~~~~~g~~~~A~~~~~~m~~~~~~~p~----------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~- 445 (515)
.+|..+ ...+...|++++|++.|++.++.....|+ ...|+.+..+|...|++++|+ ..+++..+..
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~-~~~~~al~~~~ 86 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEAL-HSADKALHYFN 86 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhh-Hhhhhhhhccc
Confidence 455555 44555678888888888888774322232 345777777888888888888 6666665421
Q ss_pred ---CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010202 446 ---HLSLD-----ITTYTLVIHGLCRANKCEWAYLLFKEMIG 479 (515)
Q Consensus 446 ---~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 479 (515)
...++ ...|..+..+|...|++++|++.|++..+
T Consensus 87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222 12355567778888888888888887753
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.13 E-value=0.0017 Score=50.57 Aligned_cols=27 Identities=7% Similarity=0.133 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010202 380 TFNTMITMFSHHGHHEKAFHVLEEMNK 406 (515)
Q Consensus 380 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 406 (515)
.|+.+..+|.+.|++++|++.+++..+
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~ 83 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALH 83 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhh
Confidence 344444555555555555555555444
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.69 E-value=0.0091 Score=41.53 Aligned_cols=59 Identities=5% Similarity=-0.032 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCC-----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010202 170 TIAKVMRRFSGAGQWEDAVRTFDELGTFG-----LEKN-TETMNLLLDTLCKEGKVELARSVFLE 228 (515)
Q Consensus 170 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 228 (515)
.+..+...+.+.|++++|+.+|++..+.. ..++ ..++..+..++.+.|++++|+..+++
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~ 71 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKK 71 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHH
Confidence 33344444555555555555554443210 0111 23344444444444444444444444
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.62 E-value=0.0058 Score=42.62 Aligned_cols=75 Identities=9% Similarity=0.034 Sum_probs=58.4
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcC---C----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHH
Q 010202 133 SSEIYEMMVDILGKVRQMDQMRALLEEMSKG---H----IVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEK-NTE 204 (515)
Q Consensus 133 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~ 204 (515)
++..+-.+...+.+.|+++.|+..|++..+. + +....++..+..++.+.|++++|++.++++.+. .| +..
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l--~P~~~~ 81 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEHQR 81 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh--CcCCHH
Confidence 4556667888999999999999999987542 1 123567888999999999999999999999885 45 455
Q ss_pred HHHHH
Q 010202 205 TMNLL 209 (515)
Q Consensus 205 ~~~~l 209 (515)
+++.+
T Consensus 82 a~~Nl 86 (95)
T d1tjca_ 82 ANGNL 86 (95)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.77 E-value=0.18 Score=37.04 Aligned_cols=80 Identities=8% Similarity=-0.056 Sum_probs=34.2
Q ss_pred ChhHHHHHHHHHHhCCCCccHhHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCH
Q 010202 252 RVDEAQWTIQEMKGHGCHPCVISYSTIIQSYCR----QYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAK----SGDF 323 (515)
Q Consensus 252 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~ 323 (515)
+.++|.+++++..+.| +......|...|.. ..+.++|+++|++..+.| ++.....|...|.. ..+.
T Consensus 38 ~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~ 111 (133)
T d1klxa_ 38 NKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNE 111 (133)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCH
Confidence 3444555555544443 23333333333332 233455555555555443 22333333333332 2345
Q ss_pred HHHHHHHHHHHhcC
Q 010202 324 EEAIRITEKMKIVG 337 (515)
Q Consensus 324 ~~a~~~~~~~~~~~ 337 (515)
++|.++|+...+.|
T Consensus 112 ~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 112 KQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCC
Confidence 55555555544443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.52 E-value=0.23 Score=36.44 Aligned_cols=48 Identities=13% Similarity=0.070 Sum_probs=23.0
Q ss_pred CHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhCC
Q 010202 357 RVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSH----HGHHEKAFHVLEEMNKLE 408 (515)
Q Consensus 357 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 408 (515)
+.++|.++|+ ...+.| ++.....|...|.. ..+.++|.++|++..+.|
T Consensus 74 d~~~A~~~~~-~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 74 DLRKAAQYYS-KACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp CHHHHHHHHH-HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHh-hhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 4455555555 333322 23333334334433 245666666666666655
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.88 E-value=0.4 Score=34.10 Aligned_cols=140 Identities=13% Similarity=0.051 Sum_probs=91.3
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHH
Q 010202 178 FSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQ 257 (515)
Q Consensus 178 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 257 (515)
+.-.|..++..++..+... ..+..-||.++.-....-+-+...+.++.+-+-+.. .+++++....
T Consensus 12 ~ildG~ve~Gveii~k~~~---ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDl------------s~C~Nlk~vv 76 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL------------DKCQNLKSVV 76 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG------------GGCSCTHHHH
T ss_pred HHHhhhHHhHHHHHHHHcc---cCCccccceeeeecccccchHHHHHHHHHHhhhcCc------------hhhhcHHHHH
Confidence 4456777888888877765 335566676776666666777777777766543322 2344444444
Q ss_pred HHHHHHHhCCCCccHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010202 258 WTIQEMKGHGCHPCVISYSTIIQSYCRQYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYLAKSGDFEEAIRITEKMKIVG 337 (515)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 337 (515)
..+-.+- .+...++..++...++|+-+.-.++++.+.+. -+|++.....+..+|.+.|+..++-+++.+.-+.|
T Consensus 77 ~C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 77 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 4333322 23445666677777888888888888776664 36677777778888888888888888888877776
Q ss_pred C
Q 010202 338 S 338 (515)
Q Consensus 338 ~ 338 (515)
+
T Consensus 151 ~ 151 (161)
T d1wy6a1 151 E 151 (161)
T ss_dssp C
T ss_pred H
Confidence 4
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.34 E-value=1.8 Score=39.20 Aligned_cols=115 Identities=5% Similarity=-0.020 Sum_probs=67.3
Q ss_pred CCHHHHHHHHHhhchhCCCCCCHHHHHHHH----HHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCChH
Q 010202 356 SRVQEAVYVYQVEMPENGVAPDTSTFNTMI----TMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKTD 431 (515)
Q Consensus 356 g~~~~A~~~~~~~~~~~~~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~~ 431 (515)
.+.+.|...+. ....... .+..-+..+- ......+..+.+..++......+ .+.......+......+++.
T Consensus 228 ~d~~~a~~~l~-~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~w~~~~al~~~~~~ 302 (450)
T d1qsaa1 228 QDAENARLMIP-SLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS---QSTSLIERRVRMALGTGDRR 302 (450)
T ss_dssp HCHHHHHHHHH-HHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC---CCHHHHHHHHHHHHHHTCHH
T ss_pred cChhHHHHHHH-hhhhccc-ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc---cchHHHHHHHHHHHHcCChH
Confidence 56777888777 4443221 2222222222 22234566777888887776643 44444455555566778888
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010202 432 ECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMI 478 (515)
Q Consensus 432 ~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 478 (515)
.+. ..+..+... ..-...-.-=+..++...|+.++|..+|....
T Consensus 303 ~~~-~~~~~l~~~--~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a 346 (450)
T d1qsaa1 303 GLN-TWLARLPME--AKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (450)
T ss_dssp HHH-HHHHHSCTT--GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHH-HHHHhcCcc--cccHHHHHHHHHHHHHHcCChhhHHHHHHHHh
Confidence 776 777666331 11112222235677888899999999888886
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.51 E-value=2.6 Score=38.10 Aligned_cols=339 Identities=10% Similarity=0.051 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH---
Q 010202 135 EIYEMMVDILGKVRQMDQMRALLEEMSKGHIVTLNTIAKVMRRFSGAGQWEDAVRTFDELGTFGLEKNTETMNLLLD--- 211 (515)
Q Consensus 135 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~--- 211 (515)
..-...+..+.+.++++.....+ ...+.+...-.....+....|+.++|...+..+-..|. ..+..+..+..
T Consensus 73 ~lr~~~l~~L~~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~ 147 (450)
T d1qsaa1 73 TLQSRFVNELARREDWRGLLAFS----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWR 147 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHC----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCchHHHHHHHHHH
Confidence 33444455666666665544333 23344555444456666667777777666665544431 12222222333
Q ss_pred ---------------HHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCccHhHHH
Q 010202 212 ---------------TLCKEGKVELARSVFLELKSCIPPNAHTFNIFIHGWCKINRVDEAQWTIQEMKGHGCHPCVISYS 276 (515)
Q Consensus 212 ---------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 276 (515)
.....|+...|..+...+.. .........+.... +...+...... . .++.....
T Consensus 148 ~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~---~~~~~~~a~~~l~~---~p~~~~~~~~~---~--~~~~~~~~ 216 (450)
T d1qsaa1 148 ASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPA---DYQTIASAIISLAN---NPNTVLTFART---T--GATDFTRQ 216 (450)
T ss_dssp HTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCG---GGHHHHHHHHHHHH---CGGGHHHHHHH---S--CCCHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCCh---hHHHHHHHHHHHHh---ChHhHHHHHhc---C--CCChhhhH
Confidence 33344444444444332211 11222333333332 22222222211 1 12333333
Q ss_pred HHHHHHHh--cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 010202 277 TIIQSYCR--QYNFSKVYELLDEMQAQGCPPNVVTYTTVMSYL----AKSGDFEEAIRITEKMKIVGSKPDSRFFNCLIY 350 (515)
Q Consensus 277 ~li~~~~~--~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 350 (515)
.+..++.+ ..+.+.|..++......... +......+-... ...+..+.+...+......+ .+.......+.
T Consensus 217 ~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~ 293 (450)
T d1qsaa1 217 MAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVR 293 (450)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHH
T ss_pred HHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHH
Confidence 33333333 35678888888877654322 332233332222 23466677777777766653 34444444555
Q ss_pred HHHhcCCHHHHHHHHHhhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHhcCCh
Q 010202 351 TLGRASRVQEAVYVYQVEMPENGVAPDTSTFNTMITMFSHHGHHEKAFHVLEEMNKLEHCKPNVQTFHPLLKSCFKTGKT 430 (515)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~g~~ 430 (515)
.....+++..+...+. .+..... ....-.--+..++...|+.++|..+|..... .++ |-..+.+- +.|..
T Consensus 294 ~al~~~~~~~~~~~~~-~l~~~~~-~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~----~~~---fYG~LAa~-~Lg~~ 363 (450)
T d1qsaa1 294 MALGTGDRRGLNTWLA-RLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ----QRG---FYPMVAAQ-RIGEE 363 (450)
T ss_dssp HHHHHTCHHHHHHHHH-HSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCS---HHHHHHHH-HTTCC
T ss_pred HHHHcCChHHHHHHHH-hcCcccc-cHHHHHHHHHHHHHHcCChhhHHHHHHHHhc----CCC---hHHHHHHH-HcCCC
Confidence 5667789999999888 6654321 2233344567888889999999999998864 233 44444322 22221
Q ss_pred HHHHHHHHHHHHHcCCCCCCHH-H---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010202 431 DECLSQLLDDMVNKHHLSLDIT-T---YTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILDEVKQKHMYDAAE 506 (515)
Q Consensus 431 ~~A~~~~~~~~~~~~~~~p~~~-~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 506 (515)
-. + .. ......+... . -..-+..+...|+..+|...+..+.+. .+......+.....+.|.++.|+
T Consensus 364 ~~-~-~~-----~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI 433 (450)
T d1qsaa1 364 YE-L-KI-----DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSV 433 (450)
T ss_dssp CC-C-CC-----CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CC-C-Cc-----CCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHH
Confidence 00 0 00 0000000100 0 112356677889999999999988752 24555556666678899999999
Q ss_pred HHHHHH
Q 010202 507 KIEAVM 512 (515)
Q Consensus 507 ~~~~~m 512 (515)
......
T Consensus 434 ~a~~~~ 439 (450)
T d1qsaa1 434 QATIAG 439 (450)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 876654
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=92.58 E-value=1.2 Score=31.67 Aligned_cols=62 Identities=16% Similarity=0.169 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 010202 418 HPLLKSCFKTGKTDECLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDI 482 (515)
Q Consensus 418 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 482 (515)
...++.....|+-++ ++++.+.+.+ .-+|++...-.+..+|.+.|...++.+++.+..+.|+
T Consensus 90 dlALd~lv~~~kkd~-Ld~i~~~l~k--n~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 90 NKALDILVIQGKRDK-LEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHTTCHHH-HHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHHH-HHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 333444444444444 2244444433 2234444445555555555555555555555555443
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.19 E-value=0.72 Score=30.99 Aligned_cols=77 Identities=13% Similarity=0.175 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcCChHH--HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010202 417 FHPLLKSCFKTGKTDE--CLSQLLDDMVNKHHLSLDITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPRYQTCRLILD 494 (515)
Q Consensus 417 ~~~ll~~~~~~g~~~~--A~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 494 (515)
|..--..+...-++|. .. +-+..+.. +.+.|++....+-+.+|.|.+++.-|.++++-...+ ..++..+|..+++
T Consensus 7 F~aRy~~~F~~~~iD~we~r-rgmN~l~~-~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilq 83 (105)
T d1v54e_ 7 FDARWVTYFNKPDIDAWELR-KGMNTLVG-YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 83 (105)
T ss_dssp HHHHHHHHHTCTTCCHHHHH-HHHHHHTT-SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHhcCcCccHHHHH-HHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHH
Confidence 3333344555544332 22 33444444 567788888888889999999999999998877652 3345556766665
Q ss_pred HH
Q 010202 495 EV 496 (515)
Q Consensus 495 ~~ 496 (515)
-+
T Consensus 84 el 85 (105)
T d1v54e_ 84 EL 85 (105)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.88 E-value=1.5 Score=29.42 Aligned_cols=63 Identities=11% Similarity=0.136 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCCChhhHHHHHH
Q 010202 183 QWEDAVRTFDELGTFGLEKNTETMNLLLDTLCKEGKVELARSVFLELKSCIPPNAHTFNIFIH 245 (515)
Q Consensus 183 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~ 245 (515)
+.-++.+-++.+....+.|++....+.+++|-+.+++..|.++++.++....++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 455777778888888889999999999999999999999999999887655555666666544
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.86 E-value=1.9 Score=30.62 Aligned_cols=78 Identities=8% Similarity=0.056 Sum_probs=51.4
Q ss_pred CCCHHhHHHHHHHHHhcC---ChHHHHHHHHHHHHHcCCCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 010202 411 KPNVQTFHPLLKSCFKTG---KTDECLSQLLDDMVNKHHLSL-D-ITTYTLVIHGLCRANKCEWAYLLFKEMIGHDITPR 485 (515)
Q Consensus 411 ~p~~~~~~~ll~~~~~~g---~~~~A~~~~~~~~~~~~~~~p-~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 485 (515)
.|+..|--....++.++. +.++|+ .+++++.+. .| + ...+-.|.-+|.+.|++++|.+.++.+++ +.|+
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI-~lLe~~~~~---~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~ 105 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGV-KILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 105 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHH-HHHHHHHHH---CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTT
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHH-HHHHHHHhc---CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCC
Confidence 455556555666666654 345778 788887763 23 2 24555677778888888888888888886 6676
Q ss_pred HHHHHHHHH
Q 010202 486 YQTCRLILD 494 (515)
Q Consensus 486 ~~~~~~ll~ 494 (515)
..-...+..
T Consensus 106 n~qA~~L~~ 114 (124)
T d2pqrb1 106 NKQVGALKS 114 (124)
T ss_dssp CHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 655444443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.52 E-value=2.3 Score=30.17 Aligned_cols=27 Identities=7% Similarity=0.000 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 010202 380 TFNTMITMFSHHGHHEKAFHVLEEMNK 406 (515)
Q Consensus 380 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 406 (515)
.+..+..+|.+.|++++|.+.++.+.+
T Consensus 75 ~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 75 CLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 334444455555555555555555555
|