Citrus Sinensis ID: 010211

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-----
MAAAVNNMCTDCVLSSSRNLSDALSFHSKAITTTRSRTTRRGCSVSHQKQRFSIRSMRISHDNHAPKISLFEESLSSIFELPNGQCTPGKGVVGPNARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQPIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSITPPTQFSAHKNRIHGSNFKSLSAFINNLCLHKSLWHEIFVSLAERELSRDWCFIKVSCPYICSFQMTWRRHSLELSSY
cccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccHHcccccccccccccccccccccccccccccEEEEcccccccHHHHHHHHHHcccEEEEccccccHHHHHHHHHHHHHHHHHccccEEEEEEcccccEEEEEcccccEEEccccEEEEEEccccccccEEEEEccccccccccccEEEEEccEEEEEEEEEEccEEEEEEEEccEEccccccccccccccccccccccHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHccccccEEEccccccccccHHHHHHHccEEEEEccccccccccccccHHHHHHHHHHHHccccEEEEcHHHHHHHccccccccHHHHHHHHHHccccEEEccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEccccHHHHHHccccccccEEEEEcHHHHHHEEEEccc
cccHHHccccccEEcccccccccccccHHHEccccccccccccEEEcccccccEcEEccccccccccccccHHHHHHHHHHHHHHccccccccccccccccEEEEEcccccccHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHHHHHcccccccEEEEEccccccEEccccccEEEccccEEEEEEccccccccEEEEccccHHHHcccccEEEEccccEEEEEEEEcccEEEEEEcccEEcccccEEEccccccccccccHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHcccccccEEEEEEcccHHHHcHHHHHHHccEEEEEHHHHHHHcccccHHHHHHHHHHHHHHHcccEEEEccccHHHHccccccHHHHHHHHHHHHHcccEEEEcHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccEEEEccHHHHHHHHHHccc
MAAAVNNmctdcvlsssrnlsdALSFHSKaitttrsrttrrgcsvshqkqrFSIRSMrishdnhapkiSLFEESLSSifelpngqctpgkgvvgpnarrktkivctigpstssREMIWKLAEEGMNVARlnmshgdhashQKTIDLVKEYNSQFEDKAVAIMLDtkgpevrsgdvpqpiilkegqefnftikrgvstedtvsvnyddfvndvevGDILLVDGGMMSLAVKSKTKDLVKCIVVdggelksrrhlnvrgksanlpsitdkdwedikfgvdnqvDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIesadsipnlhsiisasdgamvargdlgaelpiedvplLQEDIIRRCRSMQKPVIVATNMLesmidhptptraevSDIAIAVREGADAVmlsgetahgkfplkAVKVMHTVALrtesslpvsitpptqfsahknrihgsnfKSLSAFINNLCLHKSLWHEIFVSLAERelsrdwcfikvscpyicsfqmtwrrhslelssy
MAAAVNNMCTDCVLSSSRNLSDALSfhskaitttrsrttrrgcsvshqkqrfsirsmrishdnhAPKISLFEESLSSIFELpngqctpgkgvvgpnarrktkivctigpstssreMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDtkgpevrsgdvpqpiilkegqefnfTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLavksktkdlVKCIVVdggelksrrhlnvrgksanlpsitdkdweDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKiesadsipNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRtesslpvsitpptQFSAHKNRIHGSNFKSLSAFINNLCLHKSLWHEIFVSLAERELSRDWCFIKVSCPYICSFQMTWRRhslelssy
MAAAVNNMCTDCVLSSSRNLSDALSFHSKAItttrsrttrrGCSVSHQKQRFSIRSMRISHDNHAPKislfeeslssifelPNGQCTPGKGVVGPNARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQPIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSITPPTQFSAHKNRIHGSNFKSLSAFINNLCLHKSLWHEIFVSLAERELSRDWCFIKVSCPYICSFQMTWRRHSLELSSY
********CTDCVL************************************************************LSSIFELPNGQCTPGKGVVGPNARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARL************TIDLVKEYNSQFEDKAVAIMLDT*********VPQPIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTES*LPV*I*********KNRIHGSNFKSLSAFINNLCLHKSLWHEIFVSLAERELSRDWCFIKVSCPYICSFQMTWRR********
*********T**VLSSSRNLSDA************************************************************************NARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQPIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSITPP************SNFKSLSAFINNLCLHKSLWHEIFVSLAERELSRDWCFIKVSCPYICSFQMTWRRHSLELSSY
*********TDCVLSSSRNLSDALSFHSKAI*******************RFSIRSMRISHDNHAPKISLFEESLSSIFELPNGQCTPGKGVVGPNARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQPIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSITPPTQFSAHKNRIHGSNFKSLSAFINNLCLHKSLWHEIFVSLAERELSRDWCFIKVSCPYICSFQMTWRRHSLELSSY
******NMCTDCVLSS***************TT********GCSVSHQKQRFSIRSMRISHDNHAPKISLFEESLSSIFELPNGQCTPGKGVVGPNARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQPIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSITPPTQFSAHKNRIHGSNFKSLSAFINNLCLHKSLWHEIFVSLAERELSRDWCFIKVSCPYICSFQMTWRRHSLELSSY
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAAAVNNMCTDCVLSSSRNLSDALSFHSKAITTTRSRTTRRGCSVSHQKQRFSIRSMRISHDNHAPKISLFEESLSSIFELPNGQCTPGKGVVGPNARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQPIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSITPPTQFSAHKNRIHGSNFKSLSAFINNLCLHKSLWHEIFVSLAERELSRDWCFIKVSCPYICSFQMTWRRHSLELSSY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query515 2.2.26 [Sep-21-2011]
Q40546562 Pyruvate kinase isozyme G N/A no 0.722 0.661 0.862 0.0
Q93Z53571 Plastidial pyruvate kinas yes no 0.831 0.749 0.753 0.0
Q9FLW9579 Plastidial pyruvate kinas no no 0.834 0.742 0.681 1e-172
P55964418 Pyruvate kinase isozyme G N/A no 0.565 0.696 0.907 1e-153
Q40545593 Pyruvate kinase isozyme A N/A no 0.652 0.566 0.5 6e-89
Q9LIK0596 Plastidial pyruvate kinas no no 0.652 0.563 0.511 7e-89
Q43117583 Pyruvate kinase isozyme A N/A no 0.652 0.576 0.5 3e-87
Q6GG09 585 Pyruvate kinase OS=Staphy yes no 0.646 0.569 0.483 5e-86
Q7A0N4 585 Pyruvate kinase OS=Staphy yes no 0.646 0.569 0.483 7e-86
Q6G8M9 585 Pyruvate kinase OS=Staphy yes no 0.646 0.569 0.483 7e-86
>sp|Q40546|KPYG_TOBAC Pyruvate kinase isozyme G, chloroplastic OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function desciption
 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/372 (86%), Positives = 348/372 (93%)

Query: 79  FELPNGQCTPGKGVVGPNARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHA 138
           F +P+   + G+  V  N+ RKTKIVCTIGPSTSSREMIWKLAE GMNVARLNMSHGDHA
Sbjct: 71  FNVPSSGYSLGQESVYLNSPRKTKIVCTIGPSTSSREMIWKLAEAGMNVARLNMSHGDHA 130

Query: 139 SHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQPIILKEGQEFNFTIKRGVSTE 198
           SHQ+TIDLVKEYN+QFEDK +AIMLDTKGPEV SGDVP+PI+LKEGQEFNF+IKRGVSTE
Sbjct: 131 SHQRTIDLVKEYNAQFEDKVIAIMLDTKGPEVISGDVPKPILLKEGQEFNFSIKRGVSTE 190

Query: 199 DTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNVRGK 258
           DTVSVNYDDF+NDVE GDILLVDGGMMSLAVKSKT D+VKC V+DGGELKSRRHLNVRGK
Sbjct: 191 DTVSVNYDDFINDVEAGDILLVDGGMMSLAVKSKTSDIVKCEVIDGGELKSRRHLNVRGK 250

Query: 259 SANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESA 318
           SA LPSIT+KDW+DIKFGV+NQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESA
Sbjct: 251 SATLPSITEKDWDDIKFGVNNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESA 310

Query: 319 DSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESM 378
           DSIPNLHSIISASDGAMVARGDLGAELPIE+VPLLQEDIIRRC+SMQKPVIVATNMLESM
Sbjct: 311 DSIPNLHSIISASDGAMVARGDLGAELPIEEVPLLQEDIIRRCQSMQKPVIVATNMLESM 370

Query: 379 IDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSIT 438
           IDHPTPTRAEVSDI+IAVREGADAVMLSGETAHGK+PLKAVKVMH VALRTESSL  S +
Sbjct: 371 IDHPTPTRAEVSDISIAVREGADAVMLSGETAHGKYPLKAVKVMHIVALRTESSLQKSTS 430

Query: 439 PPTQFSAHKNRI 450
            P+Q +A+K+ +
Sbjct: 431 SPSQSAAYKSHM 442

Nicotiana tabacum (taxid: 4097)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 4EC: 0
>sp|Q93Z53|PKP3_ARATH Plastidial pyruvate kinase 3, chloroplastic OS=Arabidopsis thaliana GN=PKP3 PE=1 SV=1 Back     alignment and function description
>sp|Q9FLW9|PKP2_ARATH Plastidial pyruvate kinase 2 OS=Arabidopsis thaliana GN=PKP2 PE=1 SV=1 Back     alignment and function description
>sp|P55964|KPYG_RICCO Pyruvate kinase isozyme G, chloroplastic (Fragment) OS=Ricinus communis PE=2 SV=1 Back     alignment and function description
>sp|Q40545|KPYA_TOBAC Pyruvate kinase isozyme A, chloroplastic OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function description
>sp|Q9LIK0|PKP1_ARATH Plastidial pyruvate kinase 1, chloroplastic OS=Arabidopsis thaliana GN=PKP1 PE=1 SV=1 Back     alignment and function description
>sp|Q43117|KPYA_RICCO Pyruvate kinase isozyme A, chloroplastic OS=Ricinus communis PE=1 SV=1 Back     alignment and function description
>sp|Q6GG09|KPYK_STAAR Pyruvate kinase OS=Staphylococcus aureus (strain MRSA252) GN=pyk PE=1 SV=1 Back     alignment and function description
>sp|Q7A0N4|KPYK_STAAW Pyruvate kinase OS=Staphylococcus aureus (strain MW2) GN=pyk PE=3 SV=1 Back     alignment and function description
>sp|Q6G8M9|KPYK_STAAS Pyruvate kinase OS=Staphylococcus aureus (strain MSSA476) GN=pyk PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query515
224126535568 predicted protein [Populus trichocarpa] 0.833 0.755 0.780 0.0
224138056545 predicted protein [Populus trichocarpa] 0.809 0.765 0.791 0.0
2497542562 RecName: Full=Pyruvate kinase isozyme G, 0.722 0.661 0.862 0.0
449461531573 PREDICTED: pyruvate kinase isozyme G, ch 0.728 0.654 0.856 0.0
297742108527 unnamed protein product [Vitis vinifera] 0.735 0.719 0.841 0.0
359474560572 PREDICTED: pyruvate kinase isozyme G, ch 0.735 0.662 0.841 0.0
297846220570 hypothetical protein ARALYDRAFT_473436 [ 0.829 0.749 0.751 0.0
18398434571 plastidial pyruvate kinase 3 [Arabidopsi 0.831 0.749 0.753 0.0
8920620567 Strong similarity to a pyruvate kinase i 0.823 0.747 0.746 0.0
356495551545 PREDICTED: pyruvate kinase isozyme G, ch 0.689 0.651 0.864 0.0
>gi|224126535|ref|XP_002329578.1| predicted protein [Populus trichocarpa] gi|222870287|gb|EEF07418.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  699 bits (1804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/451 (78%), Positives = 377/451 (83%), Gaps = 22/451 (4%)

Query: 3   AAVNNMCTDC-----VLSSSRNLSDALSFHSKAITTTRSRTTRRGCSVSHQKQRFSIRSM 57
           A +NNM T       +LSSS NLSD     S+          R+ C    Q  +F++RSM
Sbjct: 2   ATINNMSTRMCRDHRILSSSGNLSDVFVLESRF---------RKRCFF--QNSKFTVRSM 50

Query: 58  RISHDNHAPKIS------LFEESLSSIFELPNGQCTPGKGVVGPNARRKTKIVCTIGPST 111
           + +  N   K++         E +SS FEL     T GK  + P ARRKTKIVCTIGPST
Sbjct: 51  KANEQNQTRKLASSNGPLTASEKVSSPFELLTNNQTLGKENINPIARRKTKIVCTIGPST 110

Query: 112 SSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVR 171
           SSREMIWKLAE GMNVARLNMSHGDH+SH+KTIDLVKEYN+Q +D  +AIMLDTKGPEVR
Sbjct: 111 SSREMIWKLAETGMNVARLNMSHGDHSSHKKTIDLVKEYNAQSDDNVIAIMLDTKGPEVR 170

Query: 172 SGDVPQPIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKS 231
           SGDVPQPIILKEGQEFNFTIKRGVSTEDTVSVNYDDF+NDVE GD+LLVDGGMMSL+VKS
Sbjct: 171 SGDVPQPIILKEGQEFNFTIKRGVSTEDTVSVNYDDFINDVEAGDMLLVDGGMMSLSVKS 230

Query: 232 KTKDLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKD 291
           KTKD VKC+VVDGGELKSRRHLNVRGKSA LPSITDKDWEDIKFGVDNQVDFYAVSFVKD
Sbjct: 231 KTKDAVKCVVVDGGELKSRRHLNVRGKSATLPSITDKDWEDIKFGVDNQVDFYAVSFVKD 290

Query: 292 AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVP 351
           AKVVHELKDYL SCNADIHVIVKIESADSIPNL SIISASDGAMVARGDLGAELPIEDVP
Sbjct: 291 AKVVHELKDYLTSCNADIHVIVKIESADSIPNLQSIISASDGAMVARGDLGAELPIEDVP 350

Query: 352 LLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAH 411
           LLQEDIIRRC +MQKPV VATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAH
Sbjct: 351 LLQEDIIRRCHNMQKPVTVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAH 410

Query: 412 GKFPLKAVKVMHTVALRTESSLPVSITPPTQ 442
           GK+PLKAVKVMHTVALRTESSLP + T PT 
Sbjct: 411 GKYPLKAVKVMHTVALRTESSLPFNSTAPTH 441

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224138056|ref|XP_002326507.1| predicted protein [Populus trichocarpa] gi|222833829|gb|EEE72306.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|2497542|sp|Q40546.1|KPYG_TOBAC RecName: Full=Pyruvate kinase isozyme G, chloroplastic; Flags: Precursor gi|482938|emb|CAA82223.1| Pyruvate kinase; plastid isozyme [Nicotiana tabacum] gi|12054705|emb|CAA49996.1| pyruvate kinase [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|449461531|ref|XP_004148495.1| PREDICTED: pyruvate kinase isozyme G, chloroplastic-like [Cucumis sativus] gi|449523171|ref|XP_004168598.1| PREDICTED: pyruvate kinase isozyme G, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297742108|emb|CBI33895.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359474560|ref|XP_002278359.2| PREDICTED: pyruvate kinase isozyme G, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297846220|ref|XP_002890991.1| hypothetical protein ARALYDRAFT_473436 [Arabidopsis lyrata subsp. lyrata] gi|297336833|gb|EFH67250.1| hypothetical protein ARALYDRAFT_473436 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18398434|ref|NP_564402.1| plastidial pyruvate kinase 3 [Arabidopsis thaliana] gi|75305901|sp|Q93Z53.1|PKP3_ARATH RecName: Full=Plastidial pyruvate kinase 3, chloroplastic; Short=PKp3; AltName: Full=Pyruvate kinase I; AltName: Full=Pyruvate kinase isozyme B2, chloroplastic; Short=PKP-BETA2; Short=Plastidic pyruvate kinase beta subunit 2; Flags: Precursor gi|16648691|gb|AAL25538.1| At1g32440/F5D14_7 [Arabidopsis thaliana] gi|24797052|gb|AAN64538.1| At1g32440/F5D14_7 [Arabidopsis thaliana] gi|332193366|gb|AEE31487.1| plastidial pyruvate kinase 3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|8920620|gb|AAF81342.1|AC007767_22 Strong similarity to a pyruvate kinase isozyme G, chloroplast precursor from Nicotiana tabacum gb|Z28374. It contains a pyruvate kinase domain PF|00224. EST gb|AI996399 comes from this gene [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356495551|ref|XP_003516640.1| PREDICTED: pyruvate kinase isozyme G, chloroplastic-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query515
TAIR|locus:2033760571 PKp3 "plastidial pyruvate kina 0.866 0.781 0.736 7.6e-167
TAIR|locus:2176912579 PKP-BETA1 "plastidic pyruvate 0.691 0.614 0.814 5.2e-152
TAIR|locus:2084583596 PKP-ALPHA [Arabidopsis thalian 0.652 0.563 0.511 3.2e-81
TIGR_CMR|BA_4843 585 BA_4843 "pyruvate kinase" [Bac 0.648 0.570 0.459 4e-74
UNIPROTKB|P0AD61470 pykF "pyruvate kinase I monome 0.642 0.704 0.452 8.4e-74
UNIPROTKB|Q9KUN0470 VC_0485 "Pyruvate kinase" [Vib 0.656 0.719 0.446 2.5e-72
TIGR_CMR|CHY_1144 583 CHY_1144 "pyruvate kinase" [Ca 0.644 0.569 0.452 2.5e-72
TIGR_CMR|VC_0485470 VC_0485 "pyruvate kinase I" [V 0.656 0.719 0.446 2.5e-72
MGI|MGI:97591531 Pkm "pyruvate kinase, muscle" 0.658 0.638 0.435 5.5e-70
UNIPROTKB|F1NW43532 PKM2 "Pyruvate kinase" [Gallus 0.658 0.637 0.430 1.4e-69
TAIR|locus:2033760 PKp3 "plastidial pyruvate kinase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1623 (576.4 bits), Expect = 7.6e-167, P = 7.6e-167
 Identities = 333/452 (73%), Positives = 370/452 (81%)

Query:    13 VLSSSRNLSDALSFHSKAIXXXXXXXXXXGCSVSHQKQRFSIRSMRISHDNHAPKXXXXX 72
             VLSSSRN+  +LS     +            S+S ++   S+RS++IS D+  PK     
Sbjct:    17 VLSSSRNIGVSLS----PLRRTLIGAGVRSTSISLRQCSLSVRSIKISEDSRKPKAYAEN 72

Query:    73 XXXXXXXXXPNGQCTPGKGVVGPNARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNM 132
                       +            ++RRKTKIVCTIGPS+SSREMIWKLAE GMNVARLNM
Sbjct:    73 GAFDVGVLDSSSYRLADSRTSSNDSRRKTKIVCTIGPSSSSREMIWKLAEAGMNVARLNM 132

Query:   133 SHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQPIILKEGQEFNFTIK 192
             SHGDHASHQ TIDLVKEYNS F DKA+AIMLDTKGPEVRSGDVPQPI L+EGQEFNFTIK
Sbjct:   133 SHGDHASHQITIDLVKEYNSLFVDKAIAIMLDTKGPEVRSGDVPQPIFLEEGQEFNFTIK 192

Query:   193 RGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRH 252
             RGVS +DTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKT DLVKC+V+DGGEL+SRRH
Sbjct:   193 RGVSLKDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTSDLVKCVVIDGGELQSRRH 252

Query:   253 LNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVI 312
             LNVRGKSA LPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELK+YLK+C+ADI VI
Sbjct:   253 LNVRGKSATLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKNYLKTCSADISVI 312

Query:   313 VKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVAT 372
             VKIESADSI NL SIISA DGAMVARGDLGAELPIE+VPLLQE+IIRRCRS+ KPVIVAT
Sbjct:   313 VKIESADSIKNLPSIISACDGAMVARGDLGAELPIEEVPLLQEEIIRRCRSIHKPVIVAT 372

Query:   373 NMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESS 432
             NMLESMI+HPTPTRAEVSDIAIAVREGADA+MLSGETAHGKFPLKAV VMHTVALRTE+S
Sbjct:   373 NMLESMINHPTPTRAEVSDIAIAVREGADAIMLSGETAHGKFPLKAVNVMHTVALRTEAS 432

Query:   433 LPVSITPPTQFSAHKNRIHGSNFKSLSAFINN 464
             LPV  T  ++ +A+K  + G  F   ++ + N
Sbjct:   433 LPVR-TSASRTTAYKGHM-GQMFAFHASIMAN 462
GO:0000287 "magnesium ion binding" evidence=IEA;IDA
GO:0003824 "catalytic activity" evidence=IEA
GO:0004743 "pyruvate kinase activity" evidence=IEA;ISS;IDA
GO:0006096 "glycolysis" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0030955 "potassium ion binding" evidence=IEA;IDA
GO:0006633 "fatty acid biosynthetic process" evidence=IGI
GO:0009570 "chloroplast stroma" evidence=IDA
TAIR|locus:2176912 PKP-BETA1 "plastidic pyruvate kinase beta subunit 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084583 PKP-ALPHA [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4843 BA_4843 "pyruvate kinase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|P0AD61 pykF "pyruvate kinase I monomer" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KUN0 VC_0485 "Pyruvate kinase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1144 CHY_1144 "pyruvate kinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|VC_0485 VC_0485 "pyruvate kinase I" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
MGI|MGI:97591 Pkm "pyruvate kinase, muscle" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1NW43 PKM2 "Pyruvate kinase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q40546KPYG_TOBAC2, ., 7, ., 1, ., 4, 00.86290.72230.6619N/Ano
P94939KPYK_MYCIT2, ., 7, ., 1, ., 4, 00.38540.80190.875yesno
Q93Z53PKP3_ARATH2, ., 7, ., 1, ., 4, 00.75330.83100.7495yesno
P55964KPYG_RICCO2, ., 7, ., 1, ., 4, 00.90750.56500.6961N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.7.1.400.946
3rd Layer2.7.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query515
PLN02623581 PLN02623, PLN02623, pyruvate kinase 0.0
PRK05826465 PRK05826, PRK05826, pyruvate kinase; Provisional 1e-155
COG0469477 COG0469, PykF, Pyruvate kinase [Carbohydrate trans 1e-151
TIGR01064473 TIGR01064, pyruv_kin, pyruvate kinase 1e-151
cd00288480 cd00288, Pyruvate_Kinase, Pyruvate kinase (PK): La 1e-135
pfam00224348 pfam00224, PK, Pyruvate kinase, barrel domain 1e-133
PRK06354 590 PRK06354, PRK06354, pyruvate kinase; Provisional 1e-128
PLN02762509 PLN02762, PLN02762, pyruvate kinase complex alpha 1e-128
PRK09206470 PRK09206, PRK09206, pyruvate kinase; Provisional 1e-118
PRK06247476 PRK06247, PRK06247, pyruvate kinase; Provisional 1e-112
PLN02461511 PLN02461, PLN02461, Probable pyruvate kinase 3e-98
PTZ00066513 PTZ00066, PTZ00066, pyruvate kinase; Provisional 3e-94
PRK06739352 PRK06739, PRK06739, pyruvate kinase; Validated 1e-83
PTZ00300454 PTZ00300, PTZ00300, pyruvate kinase; Provisional 3e-74
PLN02765526 PLN02765, PLN02765, pyruvate kinase 2e-60
PRK08187493 PRK08187, PRK08187, pyruvate kinase; Validated 3e-34
PRK14725608 PRK14725, PRK14725, pyruvate kinase; Provisional 2e-28
PRK14725608 PRK14725, PRK14725, pyruvate kinase; Provisional 3e-05
TIGR03239249 TIGR03239, GarL, 2-dehydro-3-deoxyglucarate aldola 0.002
>gnl|CDD|215334 PLN02623, PLN02623, pyruvate kinase Back     alignment and domain information 
 Score =  762 bits (1970), Expect = 0.0
 Identities = 328/460 (71%), Positives = 363/460 (78%), Gaps = 14/460 (3%)

Query: 1   MAAAVNNMCTDCVLSSSRNLSDALSFHSKAITTTRSR--TTRRGCSVSHQKQRFSIRSMR 58
            A  V     D  + SS + S +L   S     ++      R    V+ +++  +  S+R
Sbjct: 2   AAQVVATRSIDSSILSSSSGSVSLDLLSPLSFASKVLGSEARARRRVAVRRRAVTAASLR 61

Query: 59  ----------ISHDNHAPKISLFEESLSSIFELPNGQCTPGKGVVGPNARRKTKIVCTIG 108
                     +S ++         E +    +      T       P+ RRKTKIVCTIG
Sbjct: 62  SKSQETEVIPVSPEDGGANFVEDNEEVLLEIQQLGE--TAVGMWSKPSVRRKTKIVCTIG 119

Query: 109 PSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGP 168
           PST++REMIWKLAE GMNVARLNMSHGDHASHQK IDLVKEYN+Q +D  +AIMLDTKGP
Sbjct: 120 PSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGP 179

Query: 169 EVRSGDVPQPIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLA 228
           EVRSGD+PQPI+L+EGQEF FTIKRGVSTED VSVNYDDFVNDVEVGD+LLVDGGMMSLA
Sbjct: 180 EVRSGDLPQPIMLEEGQEFTFTIKRGVSTEDCVSVNYDDFVNDVEVGDMLLVDGGMMSLA 239

Query: 229 VKSKTKDLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSF 288
           VKSKT D VKC VVDGGELKSRRHLNVRGKSA LPSIT+KDWEDIKFGV+N+VDFYAVSF
Sbjct: 240 VKSKTSDSVKCEVVDGGELKSRRHLNVRGKSATLPSITEKDWEDIKFGVENKVDFYAVSF 299

Query: 289 VKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIE 348
           VKDA+VVHELKDYLKSCNADIHVIVKIESADSIPNLHSII+ASDGAMVARGDLGAELPIE
Sbjct: 300 VKDAQVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIE 359

Query: 349 DVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGE 408
           +VPLLQE+IIRRCRSM KPVIVATNMLESMI HPTPTRAEVSDIAIAVREGADAVMLSGE
Sbjct: 360 EVPLLQEEIIRRCRSMGKPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGE 419

Query: 409 TAHGKFPLKAVKVMHTVALRTESSLPVSITPPTQFSAHKN 448
           TAHGKFPLKAVKVMHTVALRTE++LP   TPP    A KN
Sbjct: 420 TAHGKFPLKAVKVMHTVALRTEATLPEGTTPPNLGQAFKN 459

Length = 581
>gnl|CDD|235619 PRK05826, PRK05826, pyruvate kinase; Provisional Back     alignment and domain information
>gnl|CDD|223545 COG0469, PykF, Pyruvate kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|233257 TIGR01064, pyruv_kin, pyruvate kinase Back     alignment and domain information
>gnl|CDD|238178 cd00288, Pyruvate_Kinase, Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors Back     alignment and domain information
>gnl|CDD|215802 pfam00224, PK, Pyruvate kinase, barrel domain Back     alignment and domain information
>gnl|CDD|235784 PRK06354, PRK06354, pyruvate kinase; Provisional Back     alignment and domain information
>gnl|CDD|215407 PLN02762, PLN02762, pyruvate kinase complex alpha subunit Back     alignment and domain information
>gnl|CDD|181699 PRK09206, PRK09206, pyruvate kinase; Provisional Back     alignment and domain information
>gnl|CDD|180487 PRK06247, PRK06247, pyruvate kinase; Provisional Back     alignment and domain information
>gnl|CDD|215255 PLN02461, PLN02461, Probable pyruvate kinase Back     alignment and domain information
>gnl|CDD|173361 PTZ00066, PTZ00066, pyruvate kinase; Provisional Back     alignment and domain information
>gnl|CDD|180676 PRK06739, PRK06739, pyruvate kinase; Validated Back     alignment and domain information
>gnl|CDD|140321 PTZ00300, PTZ00300, pyruvate kinase; Provisional Back     alignment and domain information
>gnl|CDD|215409 PLN02765, PLN02765, pyruvate kinase Back     alignment and domain information
>gnl|CDD|236178 PRK08187, PRK08187, pyruvate kinase; Validated Back     alignment and domain information
>gnl|CDD|237804 PRK14725, PRK14725, pyruvate kinase; Provisional Back     alignment and domain information
>gnl|CDD|237804 PRK14725, PRK14725, pyruvate kinase; Provisional Back     alignment and domain information
>gnl|CDD|132283 TIGR03239, GarL, 2-dehydro-3-deoxyglucarate aldolase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 515
PLN02762509 pyruvate kinase complex alpha subunit 100.0
PLN02623581 pyruvate kinase 100.0
PTZ00066513 pyruvate kinase; Provisional 100.0
PRK09206470 pyruvate kinase; Provisional 100.0
COG0469477 PykF Pyruvate kinase [Carbohydrate transport and m 100.0
PLN02461511 Probable pyruvate kinase 100.0
PRK06247476 pyruvate kinase; Provisional 100.0
PRK06354 590 pyruvate kinase; Provisional 100.0
PLN02765526 pyruvate kinase 100.0
cd00288480 Pyruvate_Kinase Pyruvate kinase (PK): Large allost 100.0
PRK05826465 pyruvate kinase; Provisional 100.0
TIGR01064473 pyruv_kin pyruvate kinase. This enzyme is a homote 100.0
PTZ00300454 pyruvate kinase; Provisional 100.0
KOG2323501 consensus Pyruvate kinase [Carbohydrate transport 100.0
PF00224348 PK: Pyruvate kinase, barrel domain; InterPro: IPR0 100.0
PRK06739352 pyruvate kinase; Validated 100.0
PRK14725608 pyruvate kinase; Provisional 100.0
PRK08187493 pyruvate kinase; Validated 100.0
TIGR03239249 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. co 99.74
PRK10558256 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Pro 99.74
PRK10128267 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional 99.71
COG3836255 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldola 99.71
TIGR02311249 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldola 99.64
PF03328221 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family 99.59
PF02887117 PK_C: Pyruvate kinase, alpha/beta domain; InterPro 99.52
TIGR01418782 PEP_synth phosphoenolpyruvate synthase. Also calle 99.35
PRK06464795 phosphoenolpyruvate synthase; Validated 99.33
TIGR01588288 citE citrate lyase, beta subunit. This is a model 99.24
TIGR01417565 PTS_I_fam phosphoenolpyruvate-protein phosphotrans 99.23
PRK11177575 phosphoenolpyruvate-protein phosphotransferase; Pr 99.13
COG2301283 CitE Citrate lyase beta subunit [Carbohydrate tran 98.56
cd00480511 malate_synt Malate synthase catalyzes the Claisen 98.36
PF02896293 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel 98.3
PRK09255531 malate synthase; Validated 98.28
cd00727511 malate_synt_A Malate synthase A (MSA), present in 98.2
TIGR01344511 malate_syn_A malate synthase A. This model represe 98.15
PRK11061748 fused phosphoenolpyruvate-protein phosphotransfera 97.4
COG1080574 PtsA Phosphoenolpyruvate-protein kinase (PTS syste 97.2
PLN02626551 malate synthase 97.02
TIGR01828856 pyru_phos_dikin pyruvate, phosphate dikinase. This 96.99
PRK08649368 inosine 5-monophosphate dehydrogenase; Validated 96.49
PRK09279879 pyruvate phosphate dikinase; Provisional 96.49
PF00478352 IMPDH: IMP dehydrogenase / GMP reductase domain; I 96.21
cd00381325 IMPDH IMPDH: The catalytic domain of the inosine m 95.86
TIGR02751 506 PEPCase_arch phosphoenolpyruvate carboxylase, arch 95.74
PTZ00314495 inosine-5'-monophosphate dehydrogenase; Provisiona 95.44
PRK13655 494 phosphoenolpyruvate carboxylase; Provisional 95.21
TIGR01304369 IMP_DH_rel_2 IMP dehydrogenase family protein. Thi 94.98
PRK05096346 guanosine 5'-monophosphate oxidoreductase; Provisi 94.13
PRK00009 911 phosphoenolpyruvate carboxylase; Reviewed 94.11
TIGR01302450 IMP_dehydrog inosine-5'-monophosphate dehydrogenas 94.09
COG3605756 PtsP Signal transduction protein containing GAF an 94.03
PLN02274505 inosine-5'-monophosphate dehydrogenase 94.03
TIGR01305343 GMP_reduct_1 guanosine monophosphate reductase, eu 93.93
PRK07807479 inosine 5-monophosphate dehydrogenase; Validated 93.57
PRK08883220 ribulose-phosphate 3-epimerase; Provisional 93.56
COG0574740 PpsA Phosphoenolpyruvate synthase/pyruvate phospha 93.53
cd00958235 DhnA Class I fructose-1,6-bisphosphate (FBP) aldol 93.28
PRK06843404 inosine 5-monophosphate dehydrogenase; Validated 93.05
PRK08745223 ribulose-phosphate 3-epimerase; Provisional 92.7
TIGR03151307 enACPred_II putative enoyl-(acyl-carrier-protein) 92.59
PRK07107502 inosine 5-monophosphate dehydrogenase; Validated 92.45
PTZ00170228 D-ribulose-5-phosphate 3-epimerase; Provisional 92.42
cd07944266 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- 91.69
PTZ00398 974 phosphoenolpyruvate carboxylase; Provisional 91.67
PRK01130221 N-acetylmannosamine-6-phosphate 2-epimerase; Provi 91.52
PRK05458326 guanosine 5'-monophosphate oxidoreductase; Provisi 91.48
cd00429211 RPE Ribulose-5-phosphate 3-epimerase (RPE). This e 91.38
cd03174265 DRE_TIM_metallolyase DRE-TIM metallolyase superfam 91.33
cd04730236 NPD_like 2-Nitropropane dioxygenase (NPD), one of 91.21
TIGR01949258 AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep 90.61
PF14010 491 PEPcase_2: Phosphoenolpyruvate carboxylase; PDB: 3 90.25
cd00958235 DhnA Class I fructose-1,6-bisphosphate (FBP) aldol 90.17
TIGR01306321 GMP_reduct_2 guanosine monophosphate reductase, ba 90.1
TIGR01163210 rpe ribulose-phosphate 3-epimerase. This family co 90.04
PRK05581220 ribulose-phosphate 3-epimerase; Validated 89.88
PRK13125244 trpA tryptophan synthase subunit alpha; Provisiona 89.76
cd07945280 DRE_TIM_CMS Leptospira interrogans citramalate syn 89.51
PRK09722229 allulose-6-phosphate 3-epimerase; Provisional 89.32
cd02940299 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM 89.19
cd00945201 Aldolase_Class_I Class I aldolases. The class I al 89.03
cd04740296 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c 88.98
PRK00694 606 4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha 88.86
cd04726202 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl 88.71
PTZ00005417 phosphoglycerate kinase; Provisional 88.69
PRK05567486 inosine 5'-monophosphate dehydrogenase; Reviewed 88.38
PF01791236 DeoC: DeoC/LacD family aldolase; InterPro: IPR0029 88.22
PLN03034481 phosphoglycerate kinase; Provisional 87.19
PLN02334229 ribulose-phosphate 3-epimerase 87.08
TIGR01303475 IMP_DH_rel_1 IMP dehydrogenase family protein. Thi 87.03
cd00331217 IGPS Indole-3-glycerol phosphate synthase (IGPS); 86.72
PRK08318420 dihydropyrimidine dehydrogenase subunit B; Validat 86.59
TIGR03128206 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the 86.28
COG2352 910 Ppc Phosphoenolpyruvate carboxylase [Energy produc 86.14
PRK00915 513 2-isopropylmalate synthase; Validated 85.76
cd00452190 KDPG_aldolase KDPG and KHG aldolase. This family b 85.74
PRK02290344 3-dehydroquinate synthase; Provisional 85.73
PRK13813215 orotidine 5'-phosphate decarboxylase; Provisional 85.59
PF00311 794 PEPcase: Phosphoenolpyruvate carboxylase; InterPro 85.44
KOG2550503 consensus IMP dehydrogenase/GMP reductase [Nucleot 85.43
TIGR02090363 LEU1_arch isopropylmalate/citramalate/homocitrate 85.29
PRK15452 443 putative protease; Provisional 85.2
cd02810289 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) 85.1
cd04732234 HisA HisA. Phosphoribosylformimino-5-aminoimidazol 84.94
cd04729219 NanE N-acetylmannosamine-6-phosphate epimerase (Na 84.41
PF01959354 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); Inte 84.19
cd04724242 Tryptophan_synthase_alpha Ttryptophan synthase (TR 83.93
PRK07565334 dihydroorotate dehydrogenase 2; Reviewed 83.69
PRK14057254 epimerase; Provisional 83.38
PRK07695201 transcriptional regulator TenI; Provisional 83.12
PRK02048 611 4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha 83.11
PRK08227264 autoinducer 2 aldolase; Validated 83.03
PF04551359 GcpE: GcpE protein; InterPro: IPR004588 This prote 82.96
PRK00507221 deoxyribose-phosphate aldolase; Provisional 82.95
cd04722200 TIM_phosphate_binding TIM barrel proteins share a 82.84
TIGR01037300 pyrD_sub1_fam dihydroorotate dehydrogenase (subfam 82.71
PRK08091228 ribulose-phosphate 3-epimerase; Validated 82.69
COG0036220 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate 82.56
PRK04302223 triosephosphate isomerase; Provisional 81.99
PF00682237 HMGL-like: HMGL-like of this family is not conserv 81.64
PF00478352 IMPDH: IMP dehydrogenase / GMP reductase domain; I 81.59
PF00834201 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam 81.19
cd07939259 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and 80.9
PRK08999312 hypothetical protein; Provisional 80.75
CHL00200263 trpA tryptophan synthase alpha subunit; Provisiona 80.64
PRK07028 430 bifunctional hexulose-6-phosphate synthase/ribonuc 80.38
PRK05581220 ribulose-phosphate 3-epimerase; Validated 80.38
TIGR00612346 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho 80.35
TIGR00007230 phosphoribosylformimino-5-aminoimidazole carboxami 80.32
TIGR01949258 AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep 80.31
cd07948262 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s 80.22
>PLN02762 pyruvate kinase complex alpha subunit Back     alignment and domain information 
Probab=100.00  E-value=8.5e-123  Score=992.29  Aligned_cols=403  Identities=45%  Similarity=0.655  Sum_probs=379.3

Q ss_pred             CCCeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCceEEEEEecCCCeeeeeccCC
Q 010211           98 RRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQ  177 (515)
Q Consensus        98 ~r~TKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~~i~I~lDL~GPkIRtG~l~~  177 (515)
                      +|||||||||||+|+++|+|++|+++||||||||||||++++|+++|+++|++++++| ++++||+||||||||||.+++
T Consensus        24 ~rrTKIV~TiGPas~~~e~l~~li~aGm~v~RlNfSHg~~e~h~~~i~~iR~~~~~~~-~~vaIl~Dl~GPkIR~g~~~~  102 (509)
T PLN02762         24 TRRTKLVCTIGPACCGFEQLEALAMGGMNVARLNMCHGTREWHRDVIRRVRRLNEEKG-FAVAVMMDTEGSEIHMGDLGG  102 (509)
T ss_pred             CCCceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcC-CceEEEecCCCCceEEEecCC
Confidence            7899999999999999999999999999999999999999999999999999999998 999999999999999999965


Q ss_pred             --cEEEecCCEEEEEeecCCC--CcceEEecccccccccCcCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEeccCcee
Q 010211          178 --PIILKEGQEFNFTIKRGVS--TEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHL  253 (515)
Q Consensus       178 --~i~L~~G~~v~lt~~~~~~--~~~~i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~~~~~~v~~~V~~gG~L~s~KgV  253 (515)
                        ++.|++||+|+|+.+...+  +++.++++|++|+++|++||.||+|||+|.|+|++++++.++|+|.+||.|++||||
T Consensus       103 ~~~i~l~~G~~v~lt~~~~~g~~~~~~i~v~y~~l~~~v~~Gd~IlidDG~i~l~V~~~~~~~v~~~v~~~G~l~~~Kgv  182 (509)
T PLN02762        103 ASSAKAEDGEEWTFTVRKFDGSRPEFTIQVNYDGFAEDVKVGDELVVDGGMVRFEVIEKIGPDVKCKCTDPGLLLPRANL  182 (509)
T ss_pred             CccEEecCCCEEEEeCCccCCCCCCcEEeechHHHHHhcCCCCEEEEeCCEEEEEEEEEECCEEEEEEEeCcEEcCCCce
Confidence              6999999999999764334  357899999999999999999999999999999999999999999999999999999


Q ss_pred             ee-------CCCccCCCCCCHhhHHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcCC--CceEEEEecChhhhhcH
Q 010211          254 NV-------RGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNA--DIHVIVKIESADSIPNL  324 (515)
Q Consensus       254 nl-------pg~~~~lp~ltekD~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~~--~i~IIaKIEt~~aveNl  324 (515)
                      |+       ||+.+++|.||+||++||+||+++|+|||++||||+++||.++|++|.+.|.  +++||||||+++|++||
T Consensus       183 Nl~~~g~~~p~~~~~lp~ltekD~~di~f~~~~~vD~ia~SFVr~a~Dv~~~r~~l~~~g~~~~~~IiAKIE~~~av~nl  262 (509)
T PLN02762        183 TFWRDGSLVRERNAMLPTISSKDWLDIDFGISEGVDFIAVSFVKSAEVIKHLKSYIAARSRDSDIGVIAKIESLDSLKNL  262 (509)
T ss_pred             eeccccCCCCCCccCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCCCCCceEEEEeCCHHHHHHH
Confidence            99       9999999999999999999999999999999999999999999999998765  79999999999999999


Q ss_pred             HHHHhhcCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEe
Q 010211          325 HSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVM  404 (515)
Q Consensus       325 deIl~~sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vm  404 (515)
                      |||++++|||||||||||+|+|+++||.+||+||++|+++|||||+||||||||+++|+|||||++||||||+||+||+|
T Consensus       263 ~eIi~~sDgiMVARGDLGvEip~e~vp~~QK~II~~c~~~gKPVIvATQmLeSMi~np~PTRAEvsDVaNAVlDGtDavM  342 (509)
T PLN02762        263 EEIIRASDGAMVARGDLGAQIPLEQVPSVQEKIVRLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALM  342 (509)
T ss_pred             HHHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCEEEECchHHhhhhCCCCCchhHHHHHHHHHhCCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecccccCCCCHHHHHHHHHHHHHHHhcCCC----CC-----CCC----CCHHHHHHHHhH---------HhhccCCChHH
Q 010211          405 LSGETAHGKFPLKAVKVMHTVALRTESSLP----VS-----ITP----PTQFSAHKNRIH---------GSNFKSLSAFI  462 (515)
Q Consensus       405 Ls~ETa~G~yPveaV~~m~~I~~~aE~~~~----~~-----~~~----~~~~~~ia~~a~---------a~~v~t~sG~t  462 (515)
                      ||+|||+|+||+|||++|++||+++|+...    +.     ...    ....++++.+++         ++.++|.||+|
T Consensus       343 LSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~aia~sa~~~A~~l~a~aIv~~T~sG~t  422 (509)
T PLN02762        343 LSGESAMGLYPEKALSVLRSVSLRMELWSREEKRHEALELPQLSSSLSDRISEEICNSAAKMANNLGVDAIFVYTKHGHM  422 (509)
T ss_pred             EcchhcCCCCHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhccccccccchHHHHHHHHHHHHhhcCCCEEEEECCCcHH
Confidence            999999999999999999999999998531    11     100    245677776654         25579999999


Q ss_pred             HHHHHhcCCCCeEEEEeCCHHHHHhcccccceEEEEcCC
Q 010211          463 NNLCLHKSLWHEIFVSLAERELSRDWCFIKVSCPYICSF  501 (515)
Q Consensus       463 A~~iS~~RP~~pIiavT~~~~~ar~l~L~~GV~p~~~~~  501 (515)
                      |+++|||||.+||||+|++++++|+|+|+|||+|++...
T Consensus       423 A~~iSk~RP~~pIia~t~~~~~~r~l~l~~GV~p~~~~~  461 (509)
T PLN02762        423 ASLLSRNRPDCPIFAFTDTTSVRRRLNLQWGLIPFRLDF  461 (509)
T ss_pred             HHHHHhhCCCCCEEEECCCHHHHHHhhcccCcEEEEeCC
Confidence            999999999999999999999999999999999998754

>PLN02623 pyruvate kinase Back     alignment and domain information
>PTZ00066 pyruvate kinase; Provisional Back     alignment and domain information
>PRK09206 pyruvate kinase; Provisional Back     alignment and domain information
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02461 Probable pyruvate kinase Back     alignment and domain information
>PRK06247 pyruvate kinase; Provisional Back     alignment and domain information
>PRK06354 pyruvate kinase; Provisional Back     alignment and domain information
>PLN02765 pyruvate kinase Back     alignment and domain information
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors Back     alignment and domain information
>PRK05826 pyruvate kinase; Provisional Back     alignment and domain information
>TIGR01064 pyruv_kin pyruvate kinase Back     alignment and domain information
>PTZ00300 pyruvate kinase; Provisional Back     alignment and domain information
>KOG2323 consensus Pyruvate kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2 Back     alignment and domain information
>PRK06739 pyruvate kinase; Validated Back     alignment and domain information
>PRK14725 pyruvate kinase; Provisional Back     alignment and domain information
>PRK08187 pyruvate kinase; Validated Back     alignment and domain information
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase Back     alignment and domain information
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional Back     alignment and domain information
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional Back     alignment and domain information
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase Back     alignment and domain information
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4 Back     alignment and domain information
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2 Back     alignment and domain information
>TIGR01418 PEP_synth phosphoenolpyruvate synthase Back     alignment and domain information
>PRK06464 phosphoenolpyruvate synthase; Validated Back     alignment and domain information
>TIGR01588 citE citrate lyase, beta subunit Back     alignment and domain information
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase Back     alignment and domain information
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional Back     alignment and domain information
>COG2301 CitE Citrate lyase beta subunit [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd00480 malate_synt Malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA Back     alignment and domain information
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ] Back     alignment and domain information
>PRK09255 malate synthase; Validated Back     alignment and domain information
>cd00727 malate_synt_A Malate synthase A (MSA), present in some bacteria, plants and fungi Back     alignment and domain information
>TIGR01344 malate_syn_A malate synthase A Back     alignment and domain information
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional Back     alignment and domain information
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02626 malate synthase Back     alignment and domain information
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase Back     alignment and domain information
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated Back     alignment and domain information
>PRK09279 pyruvate phosphate dikinase; Provisional Back     alignment and domain information
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase Back     alignment and domain information
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase Back     alignment and domain information
>TIGR02751 PEPCase_arch phosphoenolpyruvate carboxylase, archaeal type Back     alignment and domain information
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional Back     alignment and domain information
>PRK13655 phosphoenolpyruvate carboxylase; Provisional Back     alignment and domain information
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein Back     alignment and domain information
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional Back     alignment and domain information
>PRK00009 phosphoenolpyruvate carboxylase; Reviewed Back     alignment and domain information
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase Back     alignment and domain information
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms] Back     alignment and domain information
>PLN02274 inosine-5'-monophosphate dehydrogenase Back     alignment and domain information
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic Back     alignment and domain information
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated Back     alignment and domain information
>PRK08883 ribulose-phosphate 3-epimerase; Provisional Back     alignment and domain information
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea Back     alignment and domain information
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated Back     alignment and domain information
>PRK08745 ribulose-phosphate 3-epimerase; Provisional Back     alignment and domain information
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II Back     alignment and domain information
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated Back     alignment and domain information
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional Back     alignment and domain information
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain Back     alignment and domain information
>PTZ00398 phosphoenolpyruvate carboxylase; Provisional Back     alignment and domain information
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional Back     alignment and domain information
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional Back     alignment and domain information
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE) Back     alignment and domain information
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily Back     alignment and domain information
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites Back     alignment and domain information
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase Back     alignment and domain information
>PF14010 PEPcase_2: Phosphoenolpyruvate carboxylase; PDB: 3ODM_C Back     alignment and domain information
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea Back     alignment and domain information
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial Back     alignment and domain information
>TIGR01163 rpe ribulose-phosphate 3-epimerase Back     alignment and domain information
>PRK05581 ribulose-phosphate 3-epimerase; Validated Back     alignment and domain information
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional Back     alignment and domain information
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain Back     alignment and domain information
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional Back     alignment and domain information
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain Back     alignment and domain information
>cd00945 Aldolase_Class_I Class I aldolases Back     alignment and domain information
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain Back     alignment and domain information
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated Back     alignment and domain information
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) Back     alignment and domain information
>PTZ00005 phosphoglycerate kinase; Provisional Back     alignment and domain information
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed Back     alignment and domain information
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism Back     alignment and domain information
>PLN03034 phosphoglycerate kinase; Provisional Back     alignment and domain information
>PLN02334 ribulose-phosphate 3-epimerase Back     alignment and domain information
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein Back     alignment and domain information
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water Back     alignment and domain information
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated Back     alignment and domain information
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase Back     alignment and domain information
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion] Back     alignment and domain information
>PRK00915 2-isopropylmalate synthase; Validated Back     alignment and domain information
>cd00452 KDPG_aldolase KDPG and KHG aldolase Back     alignment and domain information
>PRK02290 3-dehydroquinate synthase; Provisional Back     alignment and domain information
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional Back     alignment and domain information
>PF00311 PEPcase: Phosphoenolpyruvate carboxylase; InterPro: IPR021135 Phosphoenolpyruvate carboxylase (PEPCase), an enzyme found in all multicellular plants, catalyses the formation of oxaloacetate from phosphoenolpyruvate (PEP) and a hydrocarbonate ion [] Back     alignment and domain information
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases Back     alignment and domain information
>PRK15452 putative protease; Provisional Back     alignment and domain information
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain Back     alignment and domain information
>cd04732 HisA HisA Back     alignment and domain information
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate Back     alignment and domain information
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4 Back     alignment and domain information
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) Back     alignment and domain information
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed Back     alignment and domain information
>PRK14057 epimerase; Provisional Back     alignment and domain information
>PRK07695 transcriptional regulator TenI; Provisional Back     alignment and domain information
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional Back     alignment and domain information
>PRK08227 autoinducer 2 aldolase; Validated Back     alignment and domain information
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli Back     alignment and domain information
>PRK00507 deoxyribose-phosphate aldolase; Provisional Back     alignment and domain information
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure Back     alignment and domain information
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein Back     alignment and domain information
>PRK08091 ribulose-phosphate 3-epimerase; Validated Back     alignment and domain information
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK04302 triosephosphate isomerase; Provisional Back     alignment and domain information
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members Back     alignment and domain information
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase Back     alignment and domain information
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5 Back     alignment and domain information
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain Back     alignment and domain information
>PRK08999 hypothetical protein; Provisional Back     alignment and domain information
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional Back     alignment and domain information
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated Back     alignment and domain information
>PRK05581 ribulose-phosphate 3-epimerase; Validated Back     alignment and domain information
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase Back     alignment and domain information
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase Back     alignment and domain information
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase Back     alignment and domain information
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query515
3t05_A 606 Crystal Structure Of S. Aureus Pyruvate Kinase Leng 3e-87
2e28_A 587 Crystal Structure Analysis Of Pyruvate Kinase From 4e-84
1pky_A470 Pyruvate Kinase From E. Coli In The T-State Length 2e-79
1e0u_A470 Structure R271l Mutant Of E. Coli Pyruvate Kinase L 5e-79
1e0t_A470 R292d Mutant Of E. Coli Pyruvate Kinase Length = 47 2e-78
1pkn_A530 Structure Of Rabbit Muscle Pyruvate Kinase Complexe 8e-76
1pkm_A530 The Refined Three-Dimensional Structure Of Cat Musc 1e-75
4b2d_D548 Human Pkm2 With L-serine And Fbp Bound Length = 548 1e-75
3u2z_A533 Activator-Bound Structure Of Human Pyruvate Kinase 1e-75
3g2g_A533 S437y Mutant Of Human Muscle Pyruvate Kinase, Isofo 1e-75
3srf_C551 Human M1 Pyruvate Kinase Length = 551 2e-75
1zjh_A548 Structure Of Human Muscle Pyruvate Kinase (Pkm2) Le 2e-75
4g1n_A518 Pkm2 In Complex With An Activator Length = 518 2e-75
3gqy_A550 Activator-Bound Structure Of Human Pyruvate Kinase 2e-75
3srd_A551 Human M2 Pyruvate Kinase In Complex With Fructose 1 2e-75
3n25_A531 The Structure Of Muscle Pyruvate Kinase In Complex 8e-75
1f3w_A530 Recombinant Rabbit Muscle Pyruvate Kinase Length = 9e-75
2g50_A530 The Location Of The Allosteric Amino Acid Binding S 9e-75
1aqf_A530 Pyruvate Kinase From Rabbit Muscle With Mg, K, And 1e-74
3bjt_A530 Pyruvate Kinase M2 Is A Phosphotyrosine Binding Pro 1e-74
1t5a_A567 Human Pyruvate Kinase M2 Length = 567 1e-74
1f3x_A530 S402p Mutant Of Rabbit Muscle Pyruvate Kinase Lengt 1e-74
3bjf_A518 Pyruvate Kinase M2 Is A Phosphotyrosine Binding Pro 1e-74
4drs_A526 Crystal Structure Of Cryptosporidium Parvum Pyruvat 2e-69
3ma8_A534 Crystal Structure Of Cgd1_2040, A Pyruvate Kinase F 2e-69
1pkl_A499 The Structure Of Leishmania Pyruvate Kinase Length 4e-69
3pp7_A498 Crystal Structure Of Leishmania Mexicana Pyruvate K 4e-69
3e0v_A539 Crystal Structure Of Pyruvate Kinase From Leishmani 4e-69
4ip7_A543 Structure Of The S12d Variant Of Human Liver Pyruva 6e-69
2vgi_A528 Human Erythrocyte Pyruvate Kinase: R486w Mutant Len 7e-69
2vgb_A528 Human Erythrocyte Pyruvate Kinase Length = 528 7e-69
2vgg_A528 Human Erythrocyte Pyruvate Kinase: R479h Mutant Len 8e-69
2vgf_A528 Human Erythrocyte Pyruvate Kinase: T384m Mutant Len 3e-68
3qv9_A499 Crystal Structure Of Trypanosoma Cruzi Pyruvate Kin 5e-68
4ima_A543 The Structure Of C436m-hlpyk In Complex With Citrat 6e-68
3eoe_A511 Crystal Structure Of Pyruvate Kinase From Toxoplasm 3e-64
1a3w_A500 Pyruvate Kinase From Saccharomyces Cerevisiae Compl 7e-64
3khd_A520 Crystal Structure Of Pff1300w. Length = 520 3e-60
3qtg_A461 Crystal Structure Of Pyruvate Kinase From Pyrobacul 3e-40
>pdb|3T05|A Chain A, Crystal Structure Of S. Aureus Pyruvate Kinase Length = 606 Back     alignment and structure 
Iteration: 1

 Score =  319 bits (817), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 164/342 (47%), Positives = 230/342 (67%), Gaps = 4/342 (1%)
Query: 94  GPNARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQ 153
           G +  RKTKIVCTIGP++ S EMI KL   GMNVARLN SHG H  H+  ID +++   +
Sbjct: 18  GSHMMRKTKIVCTIGPASESEEMIEKLINAGMNVARLNFSHGSHEEHKGRIDTIRKVAKR 77
Query: 154 FEDKAVAIMLDTKGPEVRSGDVPQPII-LKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDV 212
             DK VAI+LDTKGPE+R+ ++   II L+ G E   ++     T +  SV Y++ +NDV
Sbjct: 78  L-DKIVAILLDTKGPEIRTHNMKDGIIELERGNEVIVSMNEVEGTPEKFSVTYENLINDV 136
Query: 213 EVGDILLVDGGMMSLAVKS--KTKDLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDW 270
           +VG  +L+D G++ L VK     K  VKC +++ GELK+++ +N+ G   +LP IT+KD 
Sbjct: 137 QVGSYILLDDGLIELQVKDIDHAKKEVKCDILNSGELKNKKGVNLPGVRVSLPGITEKDA 196
Query: 271 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA 330
           EDI+FG+   VDF A SFV+    V E+++ L+   A+I V  KIE+ + I N+  I+  
Sbjct: 197 EDIRFGIKENVDFIAASFVRRPSDVLEIREILEEQKANISVFPKIENQEGIDNIEEILEV 256
Query: 331 SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVS 390
           SDG MVARGD+G E+P E VP++Q+D+IR+C  + KPVI AT ML+SM  +P  TRAE S
Sbjct: 257 SDGLMVARGDMGVEIPPEKVPMVQKDLIRQCNKLGKPVITATQMLDSMQRNPRATRAEAS 316
Query: 391 DIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESS 432
           D+A A+ +G DAVMLSGETA G +P +AVK M  +A+  E++
Sbjct: 317 DVANAIYDGTDAVMLSGETAAGLYPEEAVKTMRNIAVSAEAA 358
>pdb|2E28|A Chain A, Crystal Structure Analysis Of Pyruvate Kinase From Bacillus Stearothermophilus Length = 587 Back     alignment and structure
>pdb|1PKY|A Chain A, Pyruvate Kinase From E. Coli In The T-State Length = 470 Back     alignment and structure
>pdb|1E0U|A Chain A, Structure R271l Mutant Of E. Coli Pyruvate Kinase Length = 470 Back     alignment and structure
>pdb|1E0T|A Chain A, R292d Mutant Of E. Coli Pyruvate Kinase Length = 470 Back     alignment and structure
>pdb|1PKN|A Chain A, Structure Of Rabbit Muscle Pyruvate Kinase Complexed With Mn2+, K+, And Pyruvate Length = 530 Back     alignment and structure
>pdb|1PKM|A Chain A, The Refined Three-Dimensional Structure Of Cat Muscle (M1) Pyruvate Kinase, At A Resolution Of 2.6 Angstroms Length = 530 Back     alignment and structure
>pdb|4B2D|D Chain D, Human Pkm2 With L-serine And Fbp Bound Length = 548 Back     alignment and structure
>pdb|3U2Z|A Chain A, Activator-Bound Structure Of Human Pyruvate Kinase M2 Length = 533 Back     alignment and structure
>pdb|3G2G|A Chain A, S437y Mutant Of Human Muscle Pyruvate Kinase, Isoform M2 Length = 533 Back     alignment and structure
>pdb|3SRF|C Chain C, Human M1 Pyruvate Kinase Length = 551 Back     alignment and structure
>pdb|1ZJH|A Chain A, Structure Of Human Muscle Pyruvate Kinase (Pkm2) Length = 548 Back     alignment and structure
>pdb|4G1N|A Chain A, Pkm2 In Complex With An Activator Length = 518 Back     alignment and structure
>pdb|3GQY|A Chain A, Activator-Bound Structure Of Human Pyruvate Kinase M2 Length = 550 Back     alignment and structure
>pdb|3SRD|A Chain A, Human M2 Pyruvate Kinase In Complex With Fructose 1-6 Bisphosphate And Oxalate. Length = 551 Back     alignment and structure
>pdb|3N25|A Chain A, The Structure Of Muscle Pyruvate Kinase In Complex With Proline, Pyruvate, And Mn2+ Length = 531 Back     alignment and structure
>pdb|1F3W|A Chain A, Recombinant Rabbit Muscle Pyruvate Kinase Length = 530 Back     alignment and structure
>pdb|2G50|A Chain A, The Location Of The Allosteric Amino Acid Binding Site Of Muscle Pyruvate Kinase. Length = 530 Back     alignment and structure
>pdb|1AQF|A Chain A, Pyruvate Kinase From Rabbit Muscle With Mg, K, And L- Phospholactate Length = 530 Back     alignment and structure
>pdb|3BJT|A Chain A, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein Length = 530 Back     alignment and structure
>pdb|1T5A|A Chain A, Human Pyruvate Kinase M2 Length = 567 Back     alignment and structure
>pdb|1F3X|A Chain A, S402p Mutant Of Rabbit Muscle Pyruvate Kinase Length = 530 Back     alignment and structure
>pdb|3BJF|A Chain A, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein Length = 518 Back     alignment and structure
>pdb|4DRS|A Chain A, Crystal Structure Of Cryptosporidium Parvum Pyruvate Kinase Length = 526 Back     alignment and structure
>pdb|3MA8|A Chain A, Crystal Structure Of Cgd1_2040, A Pyruvate Kinase From Cryptosporidium Parvum Length = 534 Back     alignment and structure
>pdb|1PKL|A Chain A, The Structure Of Leishmania Pyruvate Kinase Length = 499 Back     alignment and structure
>pdb|3PP7|A Chain A, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase In Complex With The Drug Suramin, An Inhibitor Of Glycolysis. Length = 498 Back     alignment and structure
>pdb|3E0V|A Chain A, Crystal Structure Of Pyruvate Kinase From Leishmania Mexicana In Complex With Sulphate Ions Length = 539 Back     alignment and structure
>pdb|4IP7|A Chain A, Structure Of The S12d Variant Of Human Liver Pyruvate Kinase In Complex With Citrate And Fbp. Length = 543 Back     alignment and structure
>pdb|2VGI|A Chain A, Human Erythrocyte Pyruvate Kinase: R486w Mutant Length = 528 Back     alignment and structure
>pdb|2VGB|A Chain A, Human Erythrocyte Pyruvate Kinase Length = 528 Back     alignment and structure
>pdb|2VGG|A Chain A, Human Erythrocyte Pyruvate Kinase: R479h Mutant Length = 528 Back     alignment and structure
>pdb|2VGF|A Chain A, Human Erythrocyte Pyruvate Kinase: T384m Mutant Length = 528 Back     alignment and structure
>pdb|3QV9|A Chain A, Crystal Structure Of Trypanosoma Cruzi Pyruvate Kinase(Tcpyk)in Complex With Ponceau S. Length = 499 Back     alignment and structure
>pdb|4IMA|A Chain A, The Structure Of C436m-hlpyk In Complex With Citrate/mn/atp/fru-1,6-bp Length = 543 Back     alignment and structure
>pdb|3EOE|A Chain A, Crystal Structure Of Pyruvate Kinase From Toxoplasma Gondii, 55.M00007 Length = 511 Back     alignment and structure
>pdb|1A3W|A Chain A, Pyruvate Kinase From Saccharomyces Cerevisiae Complexed With Fbp, Pg, Mn2+ And K+ Length = 500 Back     alignment and structure
>pdb|3KHD|A Chain A, Crystal Structure Of Pff1300w. Length = 520 Back     alignment and structure
>pdb|3QTG|A Chain A, Crystal Structure Of Pyruvate Kinase From Pyrobaculum Aerophilum Length = 461 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query515
3gg8_A511 Pyruvate kinase; malaria, genomics, proteomics, gl 1e-165
1e0t_A470 Pyruvate kinase, PK; phosphotransferase, glycolysi 1e-165
3khd_A520 Pyruvate kinase; malaria, structural genomics, str 1e-164
3t05_A 606 Pyruvate kinase, PK; tetramer, glycolysis, transfe 1e-163
2e28_A 587 Pyruvate kinase, PK; allosteric, transferase; 2.40 1e-161
1a3w_A500 Pyruvate kinase; allosteric regulation, tranferase 1e-161
3hqn_D499 Pyruvate kinase, PK; TIM barrel, T-state enzyme, t 1e-160
3qtg_A461 Pyruvate kinase, PK; TIM barrel, glycolysis, trans 1e-160
3gr4_A550 Pyruvate kinase isozymes M1/M2; activator, acetyla 1e-160
3ma8_A534 Pyruvate kinase; parasitology, pyruvate kiase, gly 1e-158
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
3qz6_A261 HPCH/HPAI aldolase; structural genomics, PSI-biolo 4e-05
2vws_A267 YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escher 5e-05
1dxe_A256 2-dehydro-3-deoxy-galactarate aldolase; class II a 6e-05
2v5j_A287 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; l 7e-05
1izc_A339 Macrophomate synthase intermolecular diels-aldera; 3e-04
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, STRU genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A Length = 511 Back     alignment and structure
 Score =  477 bits (1231), Expect = e-165
 Identities = 137/384 (35%), Positives = 215/384 (55%), Gaps = 15/384 (3%)

Query: 57  MRISHDNHAPKISLFEE--SLSSIFELPNGQCTPGKGVVGPNARRKTKIVCTIGPSTSSR 114
           M   H + + + +L+ +   +S I E  + +              +T+IVCT+GP+  + 
Sbjct: 1   MHHHHHHSSGRENLYFQGIRMSQILEPRSEE---------DWTAHRTRIVCTMGPACWNV 51

Query: 115 EMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGD 174
           + + K+ + GMNV RLN SHGDH +H +T+  ++E   Q  +  +AI+LDTKGPE+R+G 
Sbjct: 52  DTLVKMIDAGMNVCRLNFSHGDHETHARTVQNIQEAMKQRPEARLAILLDTKGPEIRTGF 111

Query: 175 VP--QPIILKEGQEFNFTIKRGV-STEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKS 231
           +   +PI L++G          +   E T++ +Y      V+ G+ +L+  G +S+ V  
Sbjct: 112 LKDHKPITLQQGATLKIVTDYNLIGDETTIACSYGALPQSVKPGNTILIADGSLSVKVVE 171

Query: 232 KTKDLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDWEDI-KFGVDNQVDFYAVSFVK 290
              D V     +   +  R+++N+      LP I +KD  DI  FG+    +F A SFV+
Sbjct: 172 VGSDYVITQAQNTATIGERKNMNLPNVKVQLPVIGEKDKHDILNFGIPMGCNFIAASFVQ 231

Query: 291 DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDV 350
            A  V  ++  L      I +I KIE+ + + N   I++ +DG M+ARGDLG E+P E V
Sbjct: 232 SADDVRYIRGLLGPRGRHIRIIPKIENVEGLVNFDEILAEADGIMIARGDLGMEIPPEKV 291

Query: 351 PLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETA 410
            L Q+ +I +C  + KPVI AT MLESMI +P PTRAE +D+A AV +G D VMLSGETA
Sbjct: 292 FLAQKMMIAKCNVVGKPVITATQMLESMIKNPRPTRAEAADVANAVLDGTDCVMLSGETA 351

Query: 411 HGKFPLKAVKVMHTVALRTESSLP 434
           +G+FP+  V+ M  +    E+ + 
Sbjct: 352 NGEFPVITVETMARICYEAETCVD 375
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A Length = 470 Back     alignment and structure
>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE consortium, SGC, transferase; 2.70A {Plasmodium falciparum 3D7} Length = 520 Back     alignment and structure
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A {Staphylococcus aureus subsp} PDB: 3t07_A* Length = 606 Back     alignment and structure
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus} Length = 587 Back     alignment and structure
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A Length = 500 Back     alignment and structure
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, binding, glycolysis, magnesium, metal-binding, NUCL binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A* 3qv6_A* 3qv7_D* 3qv8_D* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A* Length = 499 Back     alignment and structure
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A {Pyrobaculum aerophilum} Length = 461 Back     alignment and structure
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 1zjh_A 3g2g_A 1t5a_A* 3bjt_A 3bjf_A* 1f3x_A 3n25_A 1f3w_A 1a49_A* 1a5u_A* 1aqf_A* 1pkm_A 2g50_A* 1pkn_A 2vgb_A* 2vgf_A* 2vgg_A* ... Length = 550 Back     alignment and structure
>3ma8_A Pyruvate kinase; parasitology, pyruvate kiase, glycol kinase, magnesium, transferase, structural genomi structural genomics consortium; HET: CIT; 2.64A {Cryptosporidium parvum} Length = 534 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} Length = 261 Back     alignment and structure
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A Length = 267 Back     alignment and structure
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A Length = 256 Back     alignment and structure
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A Length = 287 Back     alignment and structure
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5 Length = 339 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query515
3gr4_A550 Pyruvate kinase isozymes M1/M2; activator, acetyla 100.0
3khd_A520 Pyruvate kinase; malaria, structural genomics, str 100.0
3hqn_D499 Pyruvate kinase, PK; TIM barrel, T-state enzyme, t 100.0
4drs_A526 Pyruvate kinase; glycolysis, allosteric EN transfe 100.0
3gg8_A511 Pyruvate kinase; malaria, genomics, proteomics, gl 100.0
3qtg_A461 Pyruvate kinase, PK; TIM barrel, glycolysis, trans 100.0
3t05_A 606 Pyruvate kinase, PK; tetramer, glycolysis, transfe 100.0
1e0t_A470 Pyruvate kinase, PK; phosphotransferase, glycolysi 100.0
2e28_A 587 Pyruvate kinase, PK; allosteric, transferase; 2.40 100.0
1a3w_A500 Pyruvate kinase; allosteric regulation, tranferase 100.0
1izc_A339 Macrophomate synthase intermolecular diels-aldera; 99.76
2v5j_A287 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; l 99.73
2vws_A267 YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escher 99.72
3qz6_A261 HPCH/HPAI aldolase; structural genomics, PSI-biolo 99.69
1dxe_A256 2-dehydro-3-deoxy-galactarate aldolase; class II a 99.68
1sgj_A284 Citrate lyase, beta subunit; trimer, TIM barrel, s 99.59
2xz9_A324 Phosphoenolpyruvate-protein kinase (PTS system EI 99.38
3qll_A316 Citrate lyase; beta barrel; 2.45A {Yersinia pestis 99.22
2ols_A794 Phosphoenolpyruvate synthase; MC structural genomi 99.18
1u5h_A273 CITE; TIM barrel, structural genomics, PSI, protei 99.15
2hwg_A575 Phosphoenolpyruvate-protein phosphotransferase; en 99.14
3qqw_A332 Putative citrate lyase; TIM beta/alpha-barrel, str 99.1
2wqd_A572 Phosphoenolpyruvate-protein phosphotransferase; ki 99.1
3r4i_A339 Citrate lyase; TIM beta/alpha-barrel, structural g 99.0
3oyz_A433 Malate synthase; TIM barrel, transferase; HET: ACO 98.83
1vbg_A876 Pyruvate,orthophosphate dikinase; transferase, mai 98.58
1kbl_A873 PPDK, pyruvate phosphate dikinase; transferase, ph 98.44
1h6z_A913 Pyruvate phosphate dikinase; transferase, tropical 97.67
3cux_A528 Malate synthase; TIM barrel, glyoxylate bypass, tr 97.58
3cuz_A532 MSA, malate synthase A; TIM barrel, cytoplasm, gly 97.56
1p7t_A731 MSG, malate synthase G; TIM barrel, glyoxylate cyc 97.44
2x0s_A913 Pyruvate phosphate dikinase; transferase, tropical 96.53
4af0_A556 Inosine-5'-monophosphate dehydrogenase; oxidoreduc 96.0
3f4w_A211 Putative hexulose 6 phosphate synthase; humps, mal 94.7
3odm_A 560 Pepcase, PEPC, phosphoenolpyruvate carboxylase; be 94.45
1jqo_A 970 Phosphoenolpyruvate carboxylase; beta barrel, carb 94.22
3inp_A246 D-ribulose-phosphate 3-epimerase; IDP02542, isomer 94.18
3ovp_A228 Ribulose-phosphate 3-epimerase; iron binding, isom 93.99
3ffs_A400 Inosine-5-monophosphate dehydrogenase; beta-alpha 93.51
3usb_A511 Inosine-5'-monophosphate dehydrogenase; structural 93.13
4fo4_A366 Inosine 5'-monophosphate dehydrogenase; structural 93.12
1h1y_A228 D-ribulose-5-phosphate 3-epimerase; oxidative pent 93.1
1jqn_A 883 Pepcase, PEPC, phosphoenolpyruvate carboxylase; be 92.56
1ydn_A295 Hydroxymethylglutaryl-COA lyase; TIM-barrel protei 92.33
3ctl_A231 D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p 92.3
2qjg_A273 Putative aldolase MJ0400; beta-alpha barrel, lyase 91.9
4fxs_A496 Inosine-5'-monophosphate dehydrogenase; structural 91.67
4avf_A490 Inosine-5'-monophosphate dehydrogenase; oxidoreduc 91.65
3r2g_A361 Inosine 5'-monophosphate dehydrogenase; structural 91.05
1tqj_A230 Ribulose-phosphate 3-epimerase; beta-alpha barrel 91.0
3khj_A361 Inosine-5-monophosphate dehydrogenase; enzyme-inhi 90.95
3igs_A232 N-acetylmannosamine-6-phosphate 2-epimerase 2; ene 90.84
2z6i_A332 Trans-2-enoyl-ACP reductase II; fatty acid synthes 90.08
1w8s_A263 FBP aldolase, fructose-bisphosphate aldolase class 89.77
1jcn_A514 Inosine monophosphate dehydrogenase I; IMPD, IMPDH 89.57
3ajx_A207 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf 89.54
1rpx_A230 Protein (ribulose-phosphate 3-epimerase); chloropl 88.98
1h1y_A228 D-ribulose-5-phosphate 3-epimerase; oxidative pent 88.81
2fli_A220 Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr 88.8
1tqx_A227 D-ribulose-5-phosphate 3-epimerase, putative; stru 88.69
1y0e_A223 Putative N-acetylmannosamine-6-phosphate 2-epimer; 88.67
1mxs_A225 KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a 88.64
2c6q_A351 GMP reductase 2; TIM barrel, metal-binding, NADP, 88.55
1wbh_A214 KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} 88.41
3bo9_A326 Putative nitroalkan dioxygenase; TM0800, structura 88.27
1gte_A1025 Dihydropyrimidine dehydrogenase; electron transfer 88.22
1vhc_A224 Putative KHG/KDPG aldolase; structural genomics, u 87.83
3q58_A229 N-acetylmannosamine-6-phosphate 2-epimerase; TIM b 87.59
3ble_A337 Citramalate synthase from leptospira interrogans; 87.54
2ftp_A302 Hydroxymethylglutaryl-COA lyase; structural genomi 87.13
2yw3_A207 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox 87.09
3qja_A272 IGPS, indole-3-glycerol phosphate synthase; struct 86.98
3jr2_A218 Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon 86.96
1eep_A404 Inosine 5'-monophosphate dehydrogenase; alpha-beta 86.28
3cu2_A237 Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib 85.88
1w8s_A263 FBP aldolase, fructose-bisphosphate aldolase class 85.35
1vrd_A494 Inosine-5'-monophosphate dehydrogenase; TM1347, st 85.12
1p1x_A260 Deoxyribose-phosphate aldolase; alpha-beta barrel, 84.07
3eeg_A325 2-isopropylmalate synthase; 11106D, beta barrel, P 83.51
1ydo_A307 HMG-COA lyase; TIM-barrel protein, structural geno 83.23
1xi3_A215 Thiamine phosphate pyrophosphorylase; structural g 83.21
1f76_A336 Dihydroorotate dehydrogenase; monomer, alpha-beta- 82.82
3bw2_A369 2-nitropropane dioxygenase; TIM barrel, oxidoreduc 82.64
4g9p_A406 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; 82.31
4e38_A232 Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho 82.17
2gjl_A328 Hypothetical protein PA1024; 2-nitropropane dioxyg 81.79
1q6o_A216 Humps, 3-keto-L-gulonate 6-phosphate decarboxylase 81.7
3tsm_A272 IGPS, indole-3-glycerol phosphate synthase; struct 81.38
2cw6_A298 Hydroxymethylglutaryl-COA lyase, mitochondrial; HM 80.87
1n7k_A234 Deoxyribose-phosphate aldolase; A.pernix, tetramer 80.42
1yad_A221 Regulatory protein TENI; TIM barrel, transcription 80.16
2rdx_A379 Mandelate racemase/muconate lactonizing enzyme, P; 80.12
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 3srh_A 3srd_A 1zjh_A 4b2d_A* 4b2d_D* 3u2z_A* 3g2g_A 1t5a_A* 3bjt_A 4g1n_A* 3bjf_A* 3srf_C 1f3x_A 3n25_A 1f3w_A 1a49_A* 1a5u_A* ... Back     alignment and structure
Probab=100.00  E-value=4.2e-125  Score=1016.07  Aligned_cols=425  Identities=37%  Similarity=0.577  Sum_probs=399.1

Q ss_pred             hhhhccCCCCCCCCCCccCCCCCCCCeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhh-
Q 010211           75 LSSIFELPNGQCTPGKGVVGPNARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQ-  153 (515)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~r~TKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~-  153 (515)
                      ++|+..|.        +.+++..+|||||||||||+|+++|+|++|+++||||||||||||++|+|+++|++||+++++ 
T Consensus        46 l~~~~~l~--------~~~~~~~~rkTKIV~TiGPas~~~e~l~~Li~aGmnv~RlNfSHG~~e~h~~~i~~iR~a~~~~  117 (550)
T 3gr4_A           46 LEHMCRLD--------IDSPPITARNTGIICTIGPASRSVETLKEMIKSGMNVARLNFSHGTHEYHAETIKNVRTATESF  117 (550)
T ss_dssp             HHHHHTCC--------TTSCCCSCCCSEEEEECSTTTCSHHHHHHHHHHTCCEEEEETTSSCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHhhccC--------CCCCCccCCCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHhh
Confidence            66666665        566677899999999999999999999999999999999999999999999999999999998 


Q ss_pred             -----cCCceEEEEEecCCCeeeeeccCC----cEEEecCCEEEEEeecC---CCCcceEEecccccccccCcCCEEEEe
Q 010211          154 -----FEDKAVAIMLDTKGPEVRSGDVPQ----PIILKEGQEFNFTIKRG---VSTEDTVSVNYDDFVNDVEVGDILLVD  221 (515)
Q Consensus       154 -----~~~~~i~I~lDL~GPkIRtG~l~~----~i~L~~G~~v~lt~~~~---~~~~~~i~v~~~~l~~~v~~Gd~IliD  221 (515)
                           ++ +||+||+||||||||||.+++    +++|++||+|+|+.+..   .++.+.|+++|++|+++|++||+||+|
T Consensus       118 ~~~~~~~-~~vaIllDlkGPkIR~G~~~~~~~~~v~L~~G~~~~lt~~~~~~~~g~~~~i~v~y~~l~~~v~~Gd~Ilid  196 (550)
T 3gr4_A          118 ASDPILY-RPVAVALDTKGPEIRTGLIKGSGTAEVELKKGATLKITLDNAYMEKCDENILWLDYKNICKVVEVGSKIYVD  196 (550)
T ss_dssp             TTCTTTC-CCCEEEEECCCSCCBBCCBTTBTTCCEEECTTCEEEEECCGGGTTCBCSSEEEBSCTTHHHHCCTTCEEEET
T ss_pred             ccccccC-ceEEEEEeCCCCEEEEEecCCCCCCCeEEcCCCEEEEEeCCcccCCCCccEEecchHHHHhhcCCCCEEEEe
Confidence                 77 999999999999999999953    79999999999998753   577889999999999999999999999


Q ss_pred             CCeeEEEEEEEeCCeEEEEEeeCcEeccCceeeeCCCccCCCCCCHhhHHHhhcchhcCCcEEEecccCCHHHHHHHHHH
Q 010211          222 GGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDY  301 (515)
Q Consensus       222 DG~I~l~V~~~~~~~v~~~V~~gG~L~s~KgVnlpg~~~~lp~ltekD~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~  301 (515)
                      ||+|.|+|++++++.+.|+|++||.|+++||||+||+.+++|.||+||++||+|++++|+|||++|||++++|+.+++++
T Consensus       197 DG~i~l~V~~v~~~~v~~~V~~gG~L~s~KgvNlPg~~l~lpalTekD~~dl~f~~~~~vD~ia~SfVr~a~Dv~~~r~~  276 (550)
T 3gr4_A          197 DGLISLQVKQKGADFLVTEVENGGSLGSKKGVNLPGAAVDLPAVSEKDIQDLKFGVEQDVDMVFASFIRKASDVHEVRKV  276 (550)
T ss_dssp             TTTEEEEEEEECSSEEEEEEEECEEECSSCBEECTTSCCCCCSSCHHHHHHHHHHHHTTCSEEEETTCCSHHHHHHHHHH
T ss_pred             CCEEEEEEEEEeCCEEEEEEEeCcEEcCCceeecCCCccCCCCCCHHHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCceEEEEecChhhhhcHHHHHhhcCeeEEcCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccC
Q 010211          302 LKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDH  381 (515)
Q Consensus       302 l~~~~~~i~IIaKIEt~~aveNldeIl~~sDgImIgrgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~  381 (515)
                      |++.|.++.||+||||++||+|+|||++++|||||||||||+|+|+++|+.+||+|+++|+++|||||+||||||||+.+
T Consensus       277 L~~~g~~i~IIAKIE~~eav~nldeIl~~sDgImVaRGDLgvei~~e~vp~~Qk~iI~~c~~agkpVi~ATQMLeSMi~~  356 (550)
T 3gr4_A          277 LGEKGKNIKIISKIENHEGVRRFDEILEASDGIMVARGDLGIEIPAEKVFLAQKMMIGRCNRAGKPVICATQMLESMIKK  356 (550)
T ss_dssp             HTTTTTTSEEEEEECSHHHHHTHHHHHHHSSEEEEEHHHHHHHSCGGGHHHHHHHHHHHHHHHTCCEEEESSTTGGGGTC
T ss_pred             HHhcCCCceEEEEeCCHHHHHHHHHHHHhCCEEEEccchhcccCCHHHHHHHHHHHHHHHHHhCCCEEEEehhhHHhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcChHHHhHHHHHHHhCCcEEeecccccCCCCHHHHHHHHHHHHHHHhcCCCCC----------CCCCCHHHHHHHHhH
Q 010211          382 PTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVS----------ITPPTQFSAHKNRIH  451 (515)
Q Consensus       382 ~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~----------~~~~~~~~~ia~~a~  451 (515)
                      |+|||||++||||||+||+|++|||+|||.|+||+|||++|++||+++|+.++|.          ..+.+..++++.+++
T Consensus       357 p~PTRAEvsDVanAvldG~DavMLSgETA~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~  436 (550)
T 3gr4_A          357 PRPTRAEGSDVANAVLDGADCIMLSGETAKGDYPLEAVRMQHLIAREAEAAIYHLQLFEELRRLAPITSDPTEATAVGAV  436 (550)
T ss_dssp             SSCCHHHHHHHHHHHHHTCSEEEESHHHHTCSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHSCCCCCHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHcCCcEEEEecCccCCCCHHHHHHHHHHHHHHHhhcchhHHHHHhhhhccCCCCChHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999886542          223467778877654


Q ss_pred             ---------HhhccCCChHHHHHHHhcCCCCeEEEEeCCHHHHHhcccccceEEEEcCCc--cchhhh
Q 010211          452 ---------GSNFKSLSAFINNLCLHKSLWHEIFVSLAERELSRDWCFIKVSCPYICSFQ--MTWRRH  508 (515)
Q Consensus       452 ---------a~~v~t~sG~tA~~iS~~RP~~pIiavT~~~~~ar~l~L~~GV~p~~~~~~--~~w~~~  508 (515)
                               ++.++|.||+||+++|||||.|||||+|++++++|||+|+|||+|++++..  .+|..+
T Consensus       437 ~~A~~l~a~aIv~~T~SG~TA~~iSr~RP~~PIia~T~~~~~aR~l~L~~GV~P~~~~~~~~~~~~~~  504 (550)
T 3gr4_A          437 EASFKCCSGAIIVLTKSGRSAHQVARYRPRAPIIAVTRNPQTARQAHLYRGIFPVLCKDPVQEAWAED  504 (550)
T ss_dssp             HHHHHTTCSCEEEECSSSHHHHHHHTTCCSSCEEEEESCHHHHHHGGGSTTEEEEECCSCCCSSHHHH
T ss_pred             HHHHhcCCCEEEEECCCcHHHHHHHhhCCCCCEEEEcCCHHHHHHHhccCCeEEEEecccccccccCC
Confidence                     245799999999999999999999999999999999999999999999753  457654
>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE consortium, SGC, transferase; 2.70A {Plasmodium falciparum 3D7} Back     alignment and structure
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, binding, glycolysis, magnesium, metal-binding, NUCL binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A* 3qv6_A* 3qv7_D* 3qv8_D* 3srk_A* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A* Back     alignment and structure
>4drs_A Pyruvate kinase; glycolysis, allosteric EN transferase; 2.50A {Cryptosporidium parvum} PDB: 3ma8_A* Back     alignment and structure
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, STRU genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A Back     alignment and structure
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A {Pyrobaculum aerophilum} Back     alignment and structure
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A {Staphylococcus aureus subsp} PDB: 3t07_A* 3t0t_A* Back     alignment and structure
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A Back     alignment and structure
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus} Back     alignment and structure
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A Back     alignment and structure
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5 Back     alignment and structure
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A Back     alignment and structure
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A Back     alignment and structure
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0 Back     alignment and structure
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A Back     alignment and structure
>1sgj_A Citrate lyase, beta subunit; trimer, TIM barrel, structural genomics, PSI, protein structure initiative; 1.84A {Deinococcus radiodurans} SCOP: c.1.12.5 Back     alignment and structure
>2xz9_A Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); thermophilic, PEP-utilising enzyme, transferase; 1.68A {Thermoanaerobacter tengcongensis} PDB: 2bg5_A 2xz7_A* Back     alignment and structure
>3qll_A Citrate lyase; beta barrel; 2.45A {Yersinia pestis} Back     alignment and structure
>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2, protein structure initiative, M center for structural genomics, transferase; 2.40A {Neisseria meningitidis} Back     alignment and structure
>1u5h_A CITE; TIM barrel, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC, lyase; 1.65A {Mycobacterium tuberculosis} SCOP: c.1.12.5 PDB: 1u5v_A* 1z6k_A Back     alignment and structure
>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS; HET: NEP; 2.70A {Escherichia coli} PDB: 2kx9_A 2xdf_A 2l5h_A Back     alignment and structure
>3qqw_A Putative citrate lyase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 2.44A {Ralstonia eutropha} Back     alignment and structure
>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase, cytoplasm, transport, magnesium, PEP- utilising enzyme, phosphotransferase system; 2.40A {Staphylococcus aureus} PDB: 2hro_A Back     alignment and structure
>3r4i_A Citrate lyase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.24A {Burkholderia xenovorans} Back     alignment and structure
>3oyz_A Malate synthase; TIM barrel, transferase; HET: ACO; 1.95A {Haloferax volcanii} PDB: 3oyx_A* 3pug_A Back     alignment and structure
>1vbg_A Pyruvate,orthophosphate dikinase; transferase, maize, riken structural genomics/proteomics INI RSGI, structural genomics; 2.30A {Zea mays} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1vbh_A* Back     alignment and structure
>1kbl_A PPDK, pyruvate phosphate dikinase; transferase, phosphotransferase; 1.94A {Clostridium symbiosum} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1kc7_A* 1dik_A 1ggo_A 1jde_A 2dik_A 2r82_A 2fm4_A Back     alignment and structure
>1h6z_A Pyruvate phosphate dikinase; transferase, tropical parasite, trypanosome; 3.00A {Trypanosoma brucei} PDB: 2x0s_A Back     alignment and structure
>3cux_A Malate synthase; TIM barrel, glyoxylate bypass, transferase, tricarboxylic acid cycle; 1.70A {Bacillus anthracis} Back     alignment and structure
>3cuz_A MSA, malate synthase A; TIM barrel, cytoplasm, glyoxylate bypass, transferase, tricarboxylic acid cycle; 1.04A {Escherichia coli} PDB: 3cv1_A 3cv2_A* Back     alignment and structure
>1p7t_A MSG, malate synthase G; TIM barrel, glyoxylate cycle, acetyl-COA, cysteine-sulfenic lyase; HET: ACO PG4; 1.95A {Escherichia coli str} SCOP: c.1.13.1 PDB: 1y8b_A 1d8c_A* 2jqx_A Back     alignment and structure
>2x0s_A Pyruvate phosphate dikinase; transferase, tropical parasite; 3.00A {Trypanosoma brucei} Back     alignment and structure
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* Back     alignment and structure
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 Back     alignment and structure
>3odm_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta-barrel, lyase; 2.95A {Clostridium perfringens} Back     alignment and structure
>1jqo_A Phosphoenolpyruvate carboxylase; beta barrel, carbon dioxide fixation, lyase; 3.00A {Zea mays} SCOP: c.1.12.3 Back     alignment and structure
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} Back     alignment and structure
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A Back     alignment and structure
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} Back     alignment and structure
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Back     alignment and structure
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A Back     alignment and structure
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A Back     alignment and structure
>1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel, Mn2+ and DCDP complex, lyase; HET: DCO; 2.35A {Escherichia coli} SCOP: c.1.12.3 PDB: 1fiy_A* 1qb4_A Back     alignment and structure
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} Back     alignment and structure
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* Back     alignment and structure
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A Back     alignment and structure
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Back     alignment and structure
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} Back     alignment and structure
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} Back     alignment and structure
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 Back     alignment and structure
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} Back     alignment and structure
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 Back     alignment and structure
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* Back     alignment and structure
>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A Back     alignment and structure
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Back     alignment and structure
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} Back     alignment and structure
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 Back     alignment and structure
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A Back     alignment and structure
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 Back     alignment and structure
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 Back     alignment and structure
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 Back     alignment and structure
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 Back     alignment and structure
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* Back     alignment and structure
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* Back     alignment and structure
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} Back     alignment and structure
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Back     alignment and structure
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 Back     alignment and structure
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} Back     alignment and structure
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* Back     alignment and structure
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} Back     alignment and structure
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A Back     alignment and structure
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* Back     alignment and structure
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* Back     alignment and structure
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 Back     alignment and structure
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus} Back     alignment and structure
>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A Back     alignment and structure
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Back     alignment and structure
>1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel, lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB: 1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A 3nq8_A 3q2d_A* 3nr0_A 3nqv_A Back     alignment and structure
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} Back     alignment and structure
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 Back     alignment and structure
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 Back     alignment and structure
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* Back     alignment and structure
>4g9p_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non mevalonate PATH iron-sulphur-cluster; HET: CDI MES; 1.55A {Thermus thermophilus} PDB: 2y0f_A* Back     alignment and structure
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} Back     alignment and structure
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* Back     alignment and structure
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A* Back     alignment and structure
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 Back     alignment and structure
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* Back     alignment and structure
>1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1 Back     alignment and structure
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A* Back     alignment and structure
>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 515
d1pkla2258 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-ter 2e-56
d1pkla2258 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-ter 9e-22
d2g50a2282 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-t 5e-52
d2g50a2282 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-t 1e-22
d1a3xa2265 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-ter 9e-51
d1a3xa2265 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-ter 2e-23
d1e0ta2246 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-ter 6e-49
d1e0ta2246 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-ter 4e-22
d2g50a1102 b.58.1.1 (A:116-217) Pyruvate kinase (PK) {Rabbit 3e-20
d1a3xa1101 b.58.1.1 (A:88-188) Pyruvate kinase (PK) {Baker's 2e-19
d1e0ta198 b.58.1.1 (A:70-167) Pyruvate kinase (PK) {Escheric 4e-18
d2vgba1102 b.58.1.1 (A:160-261) Pyruvate kinase (PK) {Human ( 2e-17
d1pkla199 b.58.1.1 (A:88-186) Pyruvate kinase (PK) {Leishman 2e-15
>d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]} Length = 258 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Pyruvate kinase
domain: Pyruvate kinase, N-terminal domain
species: Leishmania mexicana [TaxId: 5665]

 Score =  187 bits (475), Expect = 2e-56
 Identities = 90/221 (40%), Positives = 127/221 (57%), Gaps = 8/221 (3%)

Query: 219 LVDGGM------MSLAVKSKTKDLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDWED 272
           L+  GM       S       +  +  +     EL    ++ +   +   P+++ KD  D
Sbjct: 40  LIQSGMSVARMNFSHGSHEYHQTTINNVRQAAAELG--VNIAIALDTKGPPAVSAKDRVD 97

Query: 273 IKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASD 332
           ++FGV+  VD    SF++ A+ V +++  L     DI +I KIE+   + N+ SII  SD
Sbjct: 98  LQFGVEQGVDMIFASFIRSAEQVGDVRKALGPKGRDIMIICKIENHQGVQNIDSIIEESD 157

Query: 333 GAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDI 392
           G MVARGDLG E+P E V + Q+ +I +C    KPVI AT MLESM  +P PTRAEVSD+
Sbjct: 158 GIMVARGDLGVEIPAEKVVVAQKILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDV 217

Query: 393 AIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSL 433
           A AV  GAD VMLSGETA GK+P + V+ M  + L  +S+L
Sbjct: 218 ANAVFNGADCVMLSGETAKGKYPNEVVQYMARICLEAQSAL 258
>d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]} Length = 258 Back     information, alignment and structure
>d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 282 Back     information, alignment and structure
>d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 282 Back     information, alignment and structure
>d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 265 Back     information, alignment and structure
>d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 265 Back     information, alignment and structure
>d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 246 Back     information, alignment and structure
>d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 246 Back     information, alignment and structure
>d2g50a1 b.58.1.1 (A:116-217) Pyruvate kinase (PK) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 102 Back     information, alignment and structure
>d1a3xa1 b.58.1.1 (A:88-188) Pyruvate kinase (PK) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 101 Back     information, alignment and structure
>d1e0ta1 b.58.1.1 (A:70-167) Pyruvate kinase (PK) {Escherichia coli [TaxId: 562]} Length = 98 Back     information, alignment and structure
>d1pkla1 b.58.1.1 (A:88-186) Pyruvate kinase (PK) {Leishmania mexicana [TaxId: 5665]} Length = 99 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query515
d1e0ta2246 Pyruvate kinase, N-terminal domain {Escherichia co 100.0
d1a3xa2265 Pyruvate kinase, N-terminal domain {Baker's yeast 100.0
d1pkla2258 Pyruvate kinase, N-terminal domain {Leishmania mex 100.0
d2g50a2282 Pyruvate kinase, N-terminal domain {Rabbit (Orycto 100.0
d1e0ta198 Pyruvate kinase (PK) {Escherichia coli [TaxId: 562 99.89
d2g50a1102 Pyruvate kinase (PK) {Rabbit (Oryctolagus cuniculu 99.88
d2vgba1102 Pyruvate kinase (PK) {Human (Homo sapiens) [TaxId: 99.88
d1a3xa1101 Pyruvate kinase (PK) {Baker's yeast (Saccharomyces 99.88
d1pkla199 Pyruvate kinase (PK) {Leishmania mexicana [TaxId: 99.87
d1dxea_253 2-dehydro-3-deoxy-galactarate aldolase {Escherichi 99.76
d1izca_299 Macrophomate synthase {Macrophoma commelinae [TaxI 99.7
d1e0ta3117 Pyruvate kinase, C-terminal domain {Escherichia co 99.6
d1a3xa3134 Pyruvate kinase, C-terminal domain {Baker's yeast 99.6
d2vgba3134 Pyruvate kinase, C-terminal domain {Human (Homo sa 99.56
d2g50a3135 Pyruvate kinase, C-terminal domain {Rabbit (Orycto 99.56
d1pkla3141 Pyruvate kinase, C-terminal domain {Leishmania mex 99.54
d1sgja_231 Citrate lyase, beta subunit {Deinococcus radiodura 98.82
d1u5ha_223 Citrate lyase, beta subunit {Mycobacterium tubercu 98.51
d1kbla1364 Pyruvate phosphate dikinase, C-terminal domain {Cl 97.66
d1vbga1356 Pyruvate phosphate dikinase, C-terminal domain {Ma 97.32
d1h6za1366 Pyruvate phosphate dikinase, C-terminal domain {Tr 96.89
d1zfja1365 Inosine monophosphate dehydrogenase (IMPDH) {Strep 95.76
d1vrda1330 Inosine monophosphate dehydrogenase (IMPDH) {Therm 95.61
d1eepa_388 Inosine monophosphate dehydrogenase (IMPDH) {Lyme 95.54
d1jr1a1378 Inosine monophosphate dehydrogenase (IMPDH) {Chine 94.54
d2cu0a1368 Inosine monophosphate dehydrogenase (IMPDH) {Pyroc 92.76
d1y0ea_222 Putative N-acetylmannosamine-6-phosphate 2-epimera 90.13
d1pvna1362 Inosine monophosphate dehydrogenase (IMPDH) {Tritr 88.32
d2flia1217 D-ribulose-5-phosphate 3-epimerase {Streptococcus 85.81
d1n7ka_234 Deoxyribose-phosphate aldolase DeoC {Archaeon Aero 83.74
d1o0ya_251 Deoxyribose-phosphate aldolase DeoC {Thermotoga ma 83.56
d1jqna_ 880 Phosphoenolpyruvate carboxylase {Escherichia coli 83.54
d1rpxa_230 D-ribulose-5-phosphate 3-epimerase {Potato (Solanu 83.53
d1xi3a_206 Thiamin phosphate synthase {Archaeon (Pyrococcus f 83.49
d1tqja_221 D-ribulose-5-phosphate 3-epimerase {Synechocystis 82.39
d1jqoa_ 936 Phosphoenolpyruvate carboxylase {Escherichia coli 82.24
d1q6oa_213 3-keto-L-gulonate 6-phosphate decarboxylase {Esche 82.12
>d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Pyruvate kinase
domain: Pyruvate kinase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.7e-80  Score=608.05  Aligned_cols=243  Identities=49%  Similarity=0.778  Sum_probs=221.5

Q ss_pred             CCCeEEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCceEEEEEecCCCeeeeeccCC
Q 010211           98 RRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQ  177 (515)
Q Consensus        98 ~r~TKIi~TiGPss~~~e~i~~li~aGm~v~RiN~SHg~~e~~~~~i~~ir~~~~~~~~~~i~I~lDL~GPkIRtG~l~~  177 (515)
                      ||||||||||||+|+++++|++|+++||||||||||||++++|+++|+++|++++++| ++++|++||+||+        
T Consensus         1 mrkTKIIaTiGPas~~~~~l~~li~aGvdv~RlN~SHg~~~~~~~~i~~ir~~~~~~~-~~~~I~~Dl~gp~--------   71 (246)
T d1e0ta2           1 MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTG-KTAAILLDTKGPA--------   71 (246)
T ss_dssp             CCCSEEEEECCGGGCSHHHHHHHHHHTEEEEEEETTSSCHHHHHHHHHHHHHHHHHHT-CCCEEEEECCCCS--------
T ss_pred             CCCCeEEEeeCCCcCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcC-CCCcccccccccc--------
Confidence            7999999999999999999999999999999999999999999999999999999999 9999999999964        


Q ss_pred             cEEEecCCEEEEEeecCCCCcceEEecccccccccCcCCEEEEeCCeeEEEEEEEeCCeEEEEEeeCcEeccCceeeeCC
Q 010211          178 PIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNVRG  257 (515)
Q Consensus       178 ~i~L~~G~~v~lt~~~~~~~~~~i~v~~~~l~~~v~~Gd~IliDDG~I~l~V~~~~~~~v~~~V~~gG~L~s~KgVnlpg  257 (515)
                                                                                                      
T Consensus        72 --------------------------------------------------------------------------------   71 (246)
T d1e0ta2          72 --------------------------------------------------------------------------------   71 (246)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccCCCCCCHhhHHHhhcchhcCCcEEEecccCCHHHHHHHHHHHHhcC-CCceEEEEecChhhhhcHHHHHhhcCeeEE
Q 010211          258 KSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCN-ADIHVIVKIESADSIPNLHSIISASDGAMV  336 (515)
Q Consensus       258 ~~~~lp~ltekD~~dI~~al~~gvD~ValSfVrsa~dv~~vr~~l~~~~-~~i~IIaKIEt~~aveNldeIl~~sDgImI  336 (515)
                             ||++|.++++||+++|+|||++|||++++|+.++|+++.+.+ .++.||+|||+++|++||++|++++|||||
T Consensus        72 -------ltekD~~~i~~a~~~~vD~ialSFVr~~~Dv~~~r~~l~~~~~~~~~iiaKIE~~~al~nldeIi~~sDgImI  144 (246)
T d1e0ta2          72 -------LAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMV  144 (246)
T ss_dssp             -------SCHHHHHHHHHHHHHTCSEEEESSCCSHHHHHHHHHHHHTTTCTTCEEEEEECSHHHHHTHHHHHHHSSEEEE
T ss_pred             -------cccCcchhhhHHHHcCCCEEEEcCCCCHHHHHHHHHHHHHhCCCCceEEEEecchhhhhchHHHHhhcceEEE
Confidence                   489999999999999999999999999999999999998775 579999999999999999999999999999


Q ss_pred             cCCcccccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccccccccCCCcChHHHhHHHHHHHhCCcEEeecccccCCCCHH
Q 010211          337 ARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPL  416 (515)
Q Consensus       337 grgDLg~elg~e~v~~aqk~Ii~~c~~aGKPvivATqmLeSMi~~~~PtrAEv~DvanaV~~G~D~vmLs~ETa~G~yPv  416 (515)
                      +|||||+|+|+++||.+||+|+++|+++|||||+||||||||+.+|.|||||++|++|+|.+|+|++|||+|||+|+||+
T Consensus       145 aRGDLg~ei~~e~vp~~Qk~ii~~~~~~~kpvi~ATq~LeSM~~~p~PTRAEv~Dv~nav~dG~D~vmLs~ETa~G~~P~  224 (246)
T d1e0ta2         145 ARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATMMLDSMIKNPRPTDAEAGDVANAILDGTDAVMLSGESAKGKYPL  224 (246)
T ss_dssp             EHHHHHHHSCHHHHHHHHHHHHHHHHHHTCEEEEECC---------CCCHHHHHHHHHHHHHTCSEEEECCC------CH
T ss_pred             EccchhhhCCHHHHHHHHHHHHHHHHHhCCCEEEehhhhhhhhcCCCCchHHHHHHHHHHHhCCcEEEEccccccCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCC
Q 010211          417 KAVKVMHTVALRTESSLPVS  436 (515)
Q Consensus       417 eaV~~m~~I~~~aE~~~~~~  436 (515)
                      +||++|++||+++|+.+.++
T Consensus       225 ~~v~~l~~i~~~~E~~~~~~  244 (246)
T d1e0ta2         225 EAVSIMATICERTDRVMNSR  244 (246)
T ss_dssp             HHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHHHHHhhhhc
Confidence            99999999999999987653
>d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]} Back     information, alignment and structure
>d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1e0ta1 b.58.1.1 (A:70-167) Pyruvate kinase (PK) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2g50a1 b.58.1.1 (A:116-217) Pyruvate kinase (PK) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1a3xa1 b.58.1.1 (A:88-188) Pyruvate kinase (PK) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pkla1 b.58.1.1 (A:88-186) Pyruvate kinase (PK) {Leishmania mexicana [TaxId: 5665]} Back     information, alignment and structure
>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae [TaxId: 108330]} Back     information, alignment and structure
>d1e0ta3 c.49.1.1 (A:354-470) Pyruvate kinase, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a3xa3 c.49.1.1 (A:367-500) Pyruvate kinase, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2g50a3 c.49.1.1 (A:396-530) Pyruvate kinase, C-terminal domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1pkla3 c.49.1.1 (A:358-498) Pyruvate kinase, C-terminal domain {Leishmania mexicana [TaxId: 5665]} Back     information, alignment and structure
>d1sgja_ c.1.12.5 (A:) Citrate lyase, beta subunit {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1u5ha_ c.1.12.5 (A:) Citrate lyase, beta subunit {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1kbla1 c.1.12.2 (A:510-873) Pyruvate phosphate dikinase, C-terminal domain {Clostridium symbiosum [TaxId: 1512]} Back     information, alignment and structure
>d1vbga1 c.1.12.2 (A:521-876) Pyruvate phosphate dikinase, C-terminal domain {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1h6za1 c.1.12.2 (A:538-903) Pyruvate phosphate dikinase, C-terminal domain {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} Back     information, alignment and structure
>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} Back     information, alignment and structure
>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jqna_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} Back     information, alignment and structure
>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} Back     information, alignment and structure
>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]} Back     information, alignment and structure
>d1jqoa_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure