Citrus Sinensis ID: 010213
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 515 | 2.2.26 [Sep-21-2011] | |||||||
| O24661 | 586 | Asparagine synthetase [gl | N/A | no | 0.986 | 0.866 | 0.885 | 0.0 | |
| P49078 | 584 | Asparagine synthetase [gl | yes | no | 0.986 | 0.869 | 0.875 | 0.0 | |
| P31752 | 590 | Asparagine synthetase [gl | N/A | no | 0.986 | 0.861 | 0.868 | 0.0 | |
| P49091 | 586 | Asparagine synthetase [gl | N/A | no | 0.986 | 0.866 | 0.864 | 0.0 | |
| P49092 | 586 | Asparagine synthetase [gl | N/A | no | 0.986 | 0.866 | 0.874 | 0.0 | |
| O24338 | 525 | Asparagine synthetase [gl | N/A | no | 0.988 | 0.969 | 0.862 | 0.0 | |
| P19252 | 583 | Asparagine synthetase, ro | N/A | no | 0.986 | 0.871 | 0.868 | 0.0 | |
| P49093 | 586 | Asparagine synthetase [gl | N/A | no | 0.986 | 0.866 | 0.850 | 0.0 | |
| P19251 | 586 | Asparagine synthetase, no | N/A | no | 0.986 | 0.866 | 0.852 | 0.0 | |
| Q9LV77 | 578 | Asparagine synthetase [gl | no | no | 0.986 | 0.878 | 0.809 | 0.0 |
| >sp|O24661|ASNS_TRIVS Asparagine synthetase [glutamine-hydrolyzing] OS=Triphysaria versicolor GN=AS PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 963 bits (2489), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/508 (88%), Positives = 482/508 (94%)
Query: 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGD 60
MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSG++ HGD YLAHQRLAI+DPASGD
Sbjct: 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGIHHHGDCYLAHQRLAIVDPASGD 60
Query: 61 QPLYNEDKKIVVTVNGEIYNHEALRERLTNHKFRTGSDCDVIAHLYEEYGENFVDMLDGM 120
QPL+NEDK+I VTVNGEIYNHE LR L NHKFRTGSDCDVIAHLYEEYGENFV+MLDGM
Sbjct: 61 QPLFNEDKRIAVTVNGEIYNHEELRALLPNHKFRTGSDCDVIAHLYEEYGENFVEMLDGM 120
Query: 121 FSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLY 180
FSFVLLD+RDN+FI ARDA GITSLYIGWGLDGS+WISSELKGL+D+CE+FE FPPGH+Y
Sbjct: 121 FSFVLLDSRDNTFIAARDAFGITSLYIGWGLDGSVWISSELKGLHDECENFEVFPPGHVY 180
Query: 181 SSKSGGLKRWYNPTWYSEAIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSL 240
SSK+ G +RWYNP W+SEAIPSTPYDPLVLR AFE AVIKRLMTDVPFGVLLSGGLDSSL
Sbjct: 181 SSKTEGFRRWYNPPWFSEAIPSTPYDPLVLRGAFEQAVIKRLMTDVPFGVLLSGGLDSSL 240
Query: 241 VASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGI 300
VA++TARHLAGTKAA++WG+QLHSFCVGLEGSPDLK KEVADYLGTVHHEF FTVQDGI
Sbjct: 241 VAAVTARHLAGTKAAKRWGSQLHSFCVGLEGSPDLKAGKEVADYLGTVHHEFLFTVQDGI 300
Query: 301 DAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPN 360
DAIE+VIYH+ETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPN
Sbjct: 301 DAIEDVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPN 360
Query: 361 KEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQ 420
KEEFHRETC KIKALHQYDCLRANK+TSAWGLEARVPFLDK+F+N+AM+IDPE KMI P
Sbjct: 361 KEEFHRETCRKIKALHQYDCLRANKATSAWGLEARVPFLDKEFVNLAMSIDPEAKMIKPD 420
Query: 421 EGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVTDKMVQN 480
+GRIEKWILRKAFDDEERPYLPKH+LYRQKEQFSDGVGYSWIDGLKAHAEQHVTDKM+ N
Sbjct: 421 QGRIEKWILRKAFDDEERPYLPKHILYRQKEQFSDGVGYSWIDGLKAHAEQHVTDKMMLN 480
Query: 481 AQYIFPHNTPLTKEAYYYRMIFERFFPQ 508
A +IFPHNTP TKE YYYRMIFERFFPQ
Sbjct: 481 AGHIFPHNTPTTKEGYYYRMIFERFFPQ 508
|
Triphysaria versicolor (taxid: 64093) EC: 6EC: .EC: 3EC: .EC: 5EC: .EC: 4 |
| >sp|P49078|ASNS1_ARATH Asparagine synthetase [glutamine-hydrolyzing] 1 OS=Arabidopsis thaliana GN=ASN1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 959 bits (2479), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/508 (87%), Positives = 484/508 (95%)
Query: 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGD 60
MCGILAVLGCSDDSQAKRVRVLELSRRL+HRGPDWSGLYQ+GD YLAHQRLA+IDPASGD
Sbjct: 1 MCGILAVLGCSDDSQAKRVRVLELSRRLRHRGPDWSGLYQNGDNYLAHQRLAVIDPASGD 60
Query: 61 QPLYNEDKKIVVTVNGEIYNHEALRERLTNHKFRTGSDCDVIAHLYEEYGENFVDMLDGM 120
QPL+NEDK IVVTVNGEIYNHE LR+RL NHKFRTGSDC+VIAHLYEEYG +FVDMLDG+
Sbjct: 61 QPLFNEDKTIVVTVNGEIYNHEELRKRLKNHKFRTGSDCEVIAHLYEEYGVDFVDMLDGI 120
Query: 121 FSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLY 180
FSFVLLDTRDNSF+VARDAIG+TSLYIGWGLDGS+WISSE+KGLNDDCEHFE FPPGH Y
Sbjct: 121 FSFVLLDTRDNSFMVARDAIGVTSLYIGWGLDGSVWISSEMKGLNDDCEHFETFPPGHFY 180
Query: 181 SSKSGGLKRWYNPTWYSEAIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSL 240
SSK GG K+WYNP W++E++PSTPY+PL +R+AFENAVIKRLMTDVPFGVLLSGGLDSSL
Sbjct: 181 SSKLGGFKQWYNPPWFNESVPSTPYEPLAIRRAFENAVIKRLMTDVPFGVLLSGGLDSSL 240
Query: 241 VASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGI 300
VASITARHLAGTKAA+QWG QLHSFCVGLEGSPDLK KEVA+YLGTVHHEFHF+VQDGI
Sbjct: 241 VASITARHLAGTKAAKQWGPQLHSFCVGLEGSPDLKAGKEVAEYLGTVHHEFHFSVQDGI 300
Query: 301 DAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPN 360
DAIE+VIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMV+SGEG+DEIFGGYLYFHKAPN
Sbjct: 301 DAIEDVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVLSGEGADEIFGGYLYFHKAPN 360
Query: 361 KEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQ 420
K+EFH+ETC KIKALH+YDCLRANKSTSA+GLEARVPFLDKDFIN AM++DPE KMI P+
Sbjct: 361 KKEFHQETCRKIKALHKYDCLRANKSTSAFGLEARVPFLDKDFINTAMSLDPESKMIKPE 420
Query: 421 EGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVTDKMVQN 480
EGRIEKW+LR+AFDDEERPYLPKH+LYRQKEQFSDGVGYSWIDGLK HA Q+V DKM+ N
Sbjct: 421 EGRIEKWVLRRAFDDEERPYLPKHILYRQKEQFSDGVGYSWIDGLKDHAAQNVNDKMMSN 480
Query: 481 AQYIFPHNTPLTKEAYYYRMIFERFFPQ 508
A +IFPHNTP TKEAYYYRMIFERFFPQ
Sbjct: 481 AGHIFPHNTPNTKEAYYYRMIFERFFPQ 508
|
Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 5 EC: . EC: 4 |
| >sp|P31752|ASNS_ASPOF Asparagine synthetase [glutamine-hydrolyzing] OS=Asparagus officinalis PE=2 SV=2 | Back alignment and function description |
|---|
Score = 949 bits (2454), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/508 (86%), Positives = 479/508 (94%)
Query: 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGD 60
MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGL QHGD +L+HQRLAIIDPASGD
Sbjct: 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLCQHGDCFLSHQRLAIIDPASGD 60
Query: 61 QPLYNEDKKIVVTVNGEIYNHEALRERLTNHKFRTGSDCDVIAHLYEEYGENFVDMLDGM 120
QPLYNEDK IVVTVNGEIYNHE LR RL +HK+RTGSDC+VIAHLYEE+GE+FVDMLDGM
Sbjct: 61 QPLYNEDKSIVVTVNGEIYNHEELRRRLPDHKYRTGSDCEVIAHLYEEHGEDFVDMLDGM 120
Query: 121 FSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLY 180
FSFVLLDTR+N F+ ARDA+GIT LYIGWGLDGS+W+SSE+KGLNDDCEHFE FPPG+LY
Sbjct: 121 FSFVLLDTRNNCFVAARDAVGITPLYIGWGLDGSVWLSSEMKGLNDDCEHFEVFPPGNLY 180
Query: 181 SSKSGGLKRWYNPTWYSEAIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSL 240
SS+SG +RWYNP WY+E IPS PYDPLVLR+AFE+AVIKRLMTDVPFGVLLSGGLDSSL
Sbjct: 181 SSRSGSFRRWYNPQWYNETIPSAPYDPLVLRKAFEDAVIKRLMTDVPFGVLLSGGLDSSL 240
Query: 241 VASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGI 300
VA++TARHLAG+KAA QWGTQLHSFCVGLEGSPDLK AKEVA+YLGTVHHEFHFTVQDGI
Sbjct: 241 VAAVTARHLAGSKAAEQWGTQLHSFCVGLEGSPDLKAAKEVAEYLGTVHHEFHFTVQDGI 300
Query: 301 DAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPN 360
DAIE+VI+H+ETYDVTTIRASTPMFLM+RKIKSLGVKMVISGEGSDEIFGGYLYFHKAPN
Sbjct: 301 DAIEDVIFHIETYDVTTIRASTPMFLMARKIKSLGVKMVISGEGSDEIFGGYLYFHKAPN 360
Query: 361 KEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQ 420
KEEFH ETC KIKALHQYDCLRANK+TSAWGLEARVPFLDK+F++VAM+IDPE KMI P
Sbjct: 361 KEEFHHETCRKIKALHQYDCLRANKATSAWGLEARVPFLDKEFMDVAMSIDPESKMIKPD 420
Query: 421 EGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVTDKMVQN 480
GRIEKW+LRKAFDDEE PYLPKH+LYRQKEQFSDGVGYSWIDGLKAHA +HVTD+M+ N
Sbjct: 421 LGRIEKWVLRKAFDDEENPYLPKHILYRQKEQFSDGVGYSWIDGLKAHAAKHVTDRMMLN 480
Query: 481 AQYIFPHNTPLTKEAYYYRMIFERFFPQ 508
A I+PHNTP TKEAYYYRMIFERFFPQ
Sbjct: 481 AARIYPHNTPTTKEAYYYRMIFERFFPQ 508
|
Asparagus officinalis (taxid: 4686) EC: 6 EC: . EC: 3 EC: . EC: 5 EC: . EC: 4 |
| >sp|P49091|ASNS_BRAOL Asparagine synthetase [glutamine-hydrolyzing] OS=Brassica oleracea PE=2 SV=2 | Back alignment and function description |
|---|
Score = 945 bits (2442), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/509 (86%), Positives = 484/509 (95%), Gaps = 1/509 (0%)
Query: 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGD 60
MCGILAVLGCSDDSQAKRVRVLELSRRL+HRGPDWSG+YQ+G YLAHQRLAIIDP SGD
Sbjct: 1 MCGILAVLGCSDDSQAKRVRVLELSRRLRHRGPDWSGIYQNGFNYLAHQRLAIIDPDSGD 60
Query: 61 QPLYNEDKKIVVTVNGEIYNHEALRERLTNHKFRTGSDCDVIAHLYEEYGENFVDMLDGM 120
QPL+NEDK IVVTVNGEIYNHE LR+ L NHKF TGSDCDVIAHLYEE+GENFVDMLDG+
Sbjct: 61 QPLFNEDKSIVVTVNGEIYNHEELRKGLKNHKFHTGSDCDVIAHLYEEHGENFVDMLDGI 120
Query: 121 FSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLY 180
FSFVLLDTRDNSF+VARDA+G+TSLYIGWGLDGS+W+SSE+KGL++DCEHFEAFPPGHLY
Sbjct: 121 FSFVLLDTRDNSFMVARDAVGVTSLYIGWGLDGSLWVSSEMKGLHEDCEHFEAFPPGHLY 180
Query: 181 SSKSGG-LKRWYNPTWYSEAIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSS 239
SSKSGG K+WYNP W++E++PSTPY+PL +R AFE+AVIKRLMTDVPFGVLLSGGLDSS
Sbjct: 181 SSKSGGGFKQWYNPPWFNESVPSTPYEPLAIRSAFEDAVIKRLMTDVPFGVLLSGGLDSS 240
Query: 240 LVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDG 299
LVASITARHLAGTKAA++WG QLHSFCVGLEGSPDLK KEVA+YLGTVHHEFHFTVQDG
Sbjct: 241 LVASITARHLAGTKAAKRWGPQLHSFCVGLEGSPDLKAGKEVAEYLGTVHHEFHFTVQDG 300
Query: 300 IDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAP 359
IDAIE+VIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMV+SGEGSDEIFGGYLYFHKAP
Sbjct: 301 IDAIEDVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVLSGEGSDEIFGGYLYFHKAP 360
Query: 360 NKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINP 419
NK+EFH+ETC KIKALH+YDCLRANK+TSA+GLEARVPFLDK+FIN AM++DPE KMI P
Sbjct: 361 NKQEFHQETCRKIKALHKYDCLRANKATSAFGLEARVPFLDKEFINTAMSLDPESKMIKP 420
Query: 420 QEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVTDKMVQ 479
+EGRIEKW+LR+AFDDEERPYLPKH+LYRQKEQFSDGVGYSWIDGLKAHA ++V DKM+
Sbjct: 421 EEGRIEKWVLRRAFDDEERPYLPKHILYRQKEQFSDGVGYSWIDGLKAHAAENVNDKMMS 480
Query: 480 NAQYIFPHNTPLTKEAYYYRMIFERFFPQ 508
A +IFPHNTPLTKEAYYYRMIFERFFPQ
Sbjct: 481 KAAFIFPHNTPLTKEAYYYRMIFERFFPQ 509
|
Brassica oleracea (taxid: 3712) EC: 6 EC: . EC: 3 EC: . EC: 5 EC: . EC: 4 |
| >sp|P49092|ASNS1_LOTJA Asparagine synthetase [glutamine-hydrolyzing] 1 OS=Lotus japonicus GN=AS1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 942 bits (2435), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/508 (87%), Positives = 476/508 (93%)
Query: 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGD 60
MCGILAVLGCSD +QAKRVRVLELSRRLKHRGPDWSGL+QHGD YLAHQRLAI+DPASGD
Sbjct: 1 MCGILAVLGCSDFTQAKRVRVLELSRRLKHRGPDWSGLHQHGDCYLAHQRLAIVDPASGD 60
Query: 61 QPLYNEDKKIVVTVNGEIYNHEALRERLTNHKFRTGSDCDVIAHLYEEYGENFVDMLDGM 120
QPL+NEDK I+VTVNGEIYNHE LR++L NH+FRTGSDCDVIAHLYEE+GENF+DMLDG+
Sbjct: 61 QPLFNEDKSIIVTVNGEIYNHEELRKQLPNHQFRTGSDCDVIAHLYEEHGENFMDMLDGI 120
Query: 121 FSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLY 180
FSFVLLDTRDN+FIVARDAIG+TSLYIGWGLDGS+WISSE+KGLNDDCEHFE FPPGHLY
Sbjct: 121 FSFVLLDTRDNTFIVARDAIGVTSLYIGWGLDGSVWISSEMKGLNDDCEHFEVFPPGHLY 180
Query: 181 SSKSGGLKRWYNPTWYSEAIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSL 240
SS+ +RWYNPTW+SE+IPS PYDPL +R AFE AVIKRLMTDVPFGVLLSGGLDSSL
Sbjct: 181 SSRERAFRRWYNPTWFSESIPSAPYDPLAVRHAFEKAVIKRLMTDVPFGVLLSGGLDSSL 240
Query: 241 VASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGI 300
VASIT+R+LA TKAA QWG++LHSFCVGLEGSPDLK AKEVADYLGTVHHEF FTVQDGI
Sbjct: 241 VASITSRYLATTKAAEQWGSKLHSFCVGLEGSPDLKAAKEVADYLGTVHHEFTFTVQDGI 300
Query: 301 DAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPN 360
DAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVK VISGEGSDEIFGGYLYFHKAPN
Sbjct: 301 DAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKWVISGEGSDEIFGGYLYFHKAPN 360
Query: 361 KEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQ 420
KEEFH ETC KIKALHQYDCLRANKST AWGLEARVPFLDK+FINVAM IDPE+KMI
Sbjct: 361 KEEFHTETCRKIKALHQYDCLRANKSTFAWGLEARVPFLDKEFINVAMNIDPEYKMIKRD 420
Query: 421 EGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVTDKMVQN 480
EGRIEK+ILR+AFDDEE+PYLPKH+LYRQKEQFSDGVGYSWIDGLK HA +HVTDKM+ N
Sbjct: 421 EGRIEKYILRRAFDDEEKPYLPKHILYRQKEQFSDGVGYSWIDGLKDHAAKHVTDKMILN 480
Query: 481 AQYIFPHNTPLTKEAYYYRMIFERFFPQ 508
A IF HNTPLTKEAYYYRMIFERFFPQ
Sbjct: 481 AGNIFRHNTPLTKEAYYYRMIFERFFPQ 508
|
Lotus japonicus (taxid: 34305) EC: 6 EC: . EC: 3 EC: . EC: 5 EC: . EC: 4 |
| >sp|O24338|ASNS_SANAU Asparagine synthetase [glutamine-hydrolyzing] OS=Sandersonia aurantiaca GN=AND1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 939 bits (2426), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/509 (86%), Positives = 474/509 (93%)
Query: 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGD 60
MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGL HGD YLAHQRLAIIDPASGD
Sbjct: 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLDHHGDCYLAHQRLAIIDPASGD 60
Query: 61 QPLYNEDKKIVVTVNGEIYNHEALRERLTNHKFRTGSDCDVIAHLYEEYGENFVDMLDGM 120
QPLYNEDK I+VTVNGEIYNHE LR+ L H FRTGSDC+VIAHLYEE+GE+F+ MLDG+
Sbjct: 61 QPLYNEDKTIIVTVNGEIYNHEELRKGLPGHTFRTGSDCEVIAHLYEEHGESFIHMLDGI 120
Query: 121 FSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLY 180
FSFVLLD+R+NSF+ ARDAIG+T LYIGWGLDGS+WISSE+KGLNDDCEHF+ FPPGHLY
Sbjct: 121 FSFVLLDSRNNSFVAARDAIGVTPLYIGWGLDGSVWISSEMKGLNDDCEHFKFFPPGHLY 180
Query: 181 SSKSGGLKRWYNPTWYSEAIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSL 240
SSK G KRWYNP W+SE IPS P+DPL LR+AFE+AVIKRLMTDVPFGVLLSGGLDSSL
Sbjct: 181 SSKEGSFKRWYNPPWFSEVIPSVPFDPLALRKAFEDAVIKRLMTDVPFGVLLSGGLDSSL 240
Query: 241 VASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGI 300
VAS+TAR+L GTKAA WGTQLHSFCVGLEGSPDLK AKEVA++LGT+HHEFHFTVQDGI
Sbjct: 241 VASVTARYLEGTKAAELWGTQLHSFCVGLEGSPDLKAAKEVANFLGTIHHEFHFTVQDGI 300
Query: 301 DAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPN 360
DAIE+VIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPN
Sbjct: 301 DAIEDVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPN 360
Query: 361 KEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQ 420
KEE H ETCHKIKALHQYDCLRANK+TSAWGLEARVPFLDK+F+NVAM+IDPEWKMI P
Sbjct: 361 KEELHLETCHKIKALHQYDCLRANKATSAWGLEARVPFLDKEFVNVAMSIDPEWKMIKPD 420
Query: 421 EGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVTDKMVQN 480
GRIEKWILR+AFDDEE PYLPKH+LYRQKEQFSDGVGYSWIDGLKAH+ HVTDKM+ N
Sbjct: 421 IGRIEKWILRRAFDDEENPYLPKHILYRQKEQFSDGVGYSWIDGLKAHSALHVTDKMMLN 480
Query: 481 AQYIFPHNTPLTKEAYYYRMIFERFFPQV 509
A +I+PHNTP TKEAYYYRMIFERFFPQ+
Sbjct: 481 AAHIYPHNTPTTKEAYYYRMIFERFFPQI 509
|
Could play a role in remobilization of nitrogen in flowers during senescence. Sandersonia aurantiaca (taxid: 61864) EC: 6 EC: . EC: 3 EC: . EC: 5 EC: . EC: 4 |
| >sp|P19252|ASNS2_PEA Asparagine synthetase, root [glutamine-hydrolyzing] OS=Pisum sativum GN=AS2 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 931 bits (2406), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/508 (86%), Positives = 469/508 (92%)
Query: 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGD 60
MCGILAVLGCSD S+AKRVRVLELSRRLKHRGP+WSGL+QHGD YLA QRLAI+DPASGD
Sbjct: 1 MCGILAVLGCSDPSRAKRVRVLELSRRLKHRGPEWSGLHQHGDCYLAQQRLAIVDPASGD 60
Query: 61 QPLYNEDKKIVVTVNGEIYNHEALRERLTNHKFRTGSDCDVIAHLYEEYGENFVDMLDGM 120
QPL+NED +VTVNGEIYNHE LR++L+NH FRTGSDCDVIAHLYEEYGE+FVDMLDG+
Sbjct: 61 QPLFNEDNPSIVTVNGEIYNHEDLRKQLSNHTFRTGSDCDVIAHLYEEYGEDFVDMLDGI 120
Query: 121 FSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLY 180
FSFV LDTRDNS+IVARDAIG+TSLYIGWGLDGS+WISSE+KGLNDDCEHFE FPPGHLY
Sbjct: 121 FSFVPLDTRDNSYIVARDAIGVTSLYIGWGLDGSVWISSEMKGLNDDCEHFECFPPGHLY 180
Query: 181 SSKSGGLKRWYNPTWYSEAIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSL 240
SSK G +RWYNP+WYSEAIPS PYDPL LR AFE AV+KRLMTDVPFGVLLSGGLDSSL
Sbjct: 181 SSKDSGFRRWYNPSWYSEAIPSAPYDPLALRHAFEKAVVKRLMTDVPFGVLLSGGLDSSL 240
Query: 241 VASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGI 300
VASIT+R+LA TKAA QWG++LHSFCVGLEGSPDLK KEVADYLGTVHHEF FTVQDGI
Sbjct: 241 VASITSRYLATTKAAEQWGSKLHSFCVGLEGSPDLKAGKEVADYLGTVHHEFTFTVQDGI 300
Query: 301 DAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPN 360
DAIE+VIYHVETYDVT+IRASTPMFLMSRKIKSLGVK VISGEGSDEIFGGYLYFHKAPN
Sbjct: 301 DAIEDVIYHVETYDVTSIRASTPMFLMSRKIKSLGVKWVISGEGSDEIFGGYLYFHKAPN 360
Query: 361 KEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQ 420
KEEFH ETC KIKALHQYDC RANKST AWGLEARVPFLDK FINVAM IDPE KMI
Sbjct: 361 KEEFHEETCRKIKALHQYDCQRANKSTYAWGLEARVPFLDKAFINVAMNIDPENKMIKRD 420
Query: 421 EGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVTDKMVQN 480
EGRIEK+ILRKAFDDEE PYLPKH+LYRQKEQFSDGVGYSWIDGLKAHA +HVTDKM+ N
Sbjct: 421 EGRIEKYILRKAFDDEENPYLPKHILYRQKEQFSDGVGYSWIDGLKAHAAKHVTDKMMLN 480
Query: 481 AQYIFPHNTPLTKEAYYYRMIFERFFPQ 508
A IFPHNTP TKEAYYYRMIFERFFPQ
Sbjct: 481 AGNIFPHNTPNTKEAYYYRMIFERFFPQ 508
|
Pisum sativum (taxid: 3888) EC: 6 EC: . EC: 3 EC: . EC: 5 EC: . EC: 4 |
| >sp|P49093|ASNS2_LOTJA Asparagine synthetase [glutamine-hydrolyzing] 2 OS=Lotus japonicus GN=AS2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 926 bits (2394), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/508 (85%), Positives = 471/508 (92%)
Query: 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGD 60
MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGL+QHGD +LAHQRLAI+DPASGD
Sbjct: 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLHQHGDNFLAHQRLAIVDPASGD 60
Query: 61 QPLYNEDKKIVVTVNGEIYNHEALRERLTNHKFRTGSDCDVIAHLYEEYGENFVDMLDGM 120
QPL+NED+ I+VTVNGEI+NHE LR++L NHKFRTG DCDVIAHLYEE+GENFVDMLDG+
Sbjct: 61 QPLFNEDQSIIVTVNGEIFNHEELRKQLPNHKFRTGCDCDVIAHLYEEHGENFVDMLDGI 120
Query: 121 FSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLY 180
FSFVLLDTRDNSF+VARDAIG+TSLYIG+GLDGS+WI+SELKGLNDDCEHFE FPPGHLY
Sbjct: 121 FSFVLLDTRDNSFLVARDAIGVTSLYIGYGLDGSVWIASELKGLNDDCEHFELFPPGHLY 180
Query: 181 SSKSGGLKRWYNPTWYSEAIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSL 240
SSK +RWYNP W+SEAIPS PYDPL LRQAFE A+IKRLMTDVPFGVLLSGGLDSSL
Sbjct: 181 SSKEKEFRRWYNPPWFSEAIPSAPYDPLALRQAFEKAIIKRLMTDVPFGVLLSGGLDSSL 240
Query: 241 VASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGI 300
VAS+TAR+LA TKAA+QWG++LHSFCVGLEG+PDLK A+EVADY+GTVHHEF +T+QDGI
Sbjct: 241 VASVTARYLADTKAAKQWGSKLHSFCVGLEGAPDLKAAREVADYIGTVHHEFQYTIQDGI 300
Query: 301 DAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPN 360
DAIE+VIYHVETYDVTTIRA TPMFLMSRKIKSLGVKMV+SGEGSDEIF GYLYFHKAPN
Sbjct: 301 DAIEDVIYHVETYDVTTIRAGTPMFLMSRKIKSLGVKMVLSGEGSDEIFAGYLYFHKAPN 360
Query: 361 KEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQ 420
KEE H+ETC KIKALH+YDCLRANKST AWGLEARVPFLDK FI+VAM IDPE KMI
Sbjct: 361 KEELHQETCSKIKALHKYDCLRANKSTYAWGLEARVPFLDKKFIDVAMGIDPENKMIKRD 420
Query: 421 EGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVTDKMVQN 480
EGRIEKW+LRKAFDDEE PYLPKH+LYRQKEQFSDGVGY WIDGLK HA +HVTDKM+ N
Sbjct: 421 EGRIEKWVLRKAFDDEENPYLPKHILYRQKEQFSDGVGYGWIDGLKDHAAKHVTDKMMLN 480
Query: 481 AQYIFPHNTPLTKEAYYYRMIFERFFPQ 508
A I+P NTP TKEAYYYRMIFERFFPQ
Sbjct: 481 ASNIYPFNTPNTKEAYYYRMIFERFFPQ 508
|
Lotus japonicus (taxid: 34305) EC: 6 EC: . EC: 3 EC: . EC: 5 EC: . EC: 4 |
| >sp|P19251|ASNS1_PEA Asparagine synthetase, nodule [glutamine-hydrolyzing] OS=Pisum sativum GN=AS1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 917 bits (2370), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/509 (85%), Positives = 470/509 (92%), Gaps = 1/509 (0%)
Query: 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGD 60
MCGILAVLGCSDDSQAKRVR+LELSRRLKHRGPDWSGL+QHGD YLAHQRLAI+DPASGD
Sbjct: 1 MCGILAVLGCSDDSQAKRVRILELSRRLKHRGPDWSGLHQHGDNYLAHQRLAIVDPASGD 60
Query: 61 QPLYNEDKKIVVTVNGEIYNHEALRERLTNHKFRTGSDCDVIAHLYEEYGENFVDMLDGM 120
QPL+NEDK I+VTVNGEIYNHE LR++L NHKF T DCDVIAHLYEE+GENFVDMLDG+
Sbjct: 61 QPLFNEDKSIIVTVNGEIYNHEELRKQLPNHKFFTQCDCDVIAHLYEEHGENFVDMLDGI 120
Query: 121 FSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLY 180
FSFVLLDTRDNSFIVARDAIG+TSLYIGWGLDGS+WI+SELKGLND+CEHFE FPPGHLY
Sbjct: 121 FSFVLLDTRDNSFIVARDAIGVTSLYIGWGLDGSVWIASELKGLNDECEHFEVFPPGHLY 180
Query: 181 SSKSGGLKRWYNPTWYSEAI-PSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSS 239
SSK +RWYNP W++EAI PSTPYDPLVLR AFE AVIKRLMTDVPFGVLLSGGLDSS
Sbjct: 181 SSKEREFRRWYNPPWFNEAIIPSTPYDPLVLRNAFEKAVIKRLMTDVPFGVLLSGGLDSS 240
Query: 240 LVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDG 299
LVAS+TAR+LAGTKAA+QWG +L SFCVGL+G+PDLK KEVAD+LGTVHHEF FT+QDG
Sbjct: 241 LVASVTARYLAGTKAAKQWGAKLPSFCVGLKGAPDLKAGKEVADFLGTVHHEFEFTIQDG 300
Query: 300 IDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAP 359
IDAIE+VIYH ETYDVTTIRA+TPMFLMSRKIKS GVK VISGEGSDEIFGGYLYFHKAP
Sbjct: 301 IDAIEDVIYHTETYDVTTIRAATPMFLMSRKIKSSGVKWVISGEGSDEIFGGYLYFHKAP 360
Query: 360 NKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINP 419
N+EEFH+ETC KIKALH+YDCLRANKST AWGLEARVPFLDKDFI VAM IDPE+KMI
Sbjct: 361 NREEFHQETCRKIKALHRYDCLRANKSTYAWGLEARVPFLDKDFIKVAMDIDPEFKMIKH 420
Query: 420 QEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVTDKMVQ 479
EGRIEKWILRKAFDDEE PYLPKH+LYRQKEQFSDGVGY WIDG+K HA +HVTD+M+
Sbjct: 421 DEGRIEKWILRKAFDDEENPYLPKHILYRQKEQFSDGVGYGWIDGIKDHAAKHVTDRMMF 480
Query: 480 NAQYIFPHNTPLTKEAYYYRMIFERFFPQ 508
NA +IFP NTP TKEAYYYRMIFERFFPQ
Sbjct: 481 NASHIFPFNTPNTKEAYYYRMIFERFFPQ 509
|
Pisum sativum (taxid: 3888) EC: 6 EC: . EC: 3 EC: . EC: 5 EC: . EC: 4 |
| >sp|Q9LV77|ASNS2_ARATH Asparagine synthetase [glutamine-hydrolyzing] 2 OS=Arabidopsis thaliana GN=ASN2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 901 bits (2329), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/508 (80%), Positives = 463/508 (91%)
Query: 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGD 60
MCGILAVLGC D+SQAKR R++ELSRRL+HRGPDWSGL+ + D YLAH+RLAIIDP SGD
Sbjct: 1 MCGILAVLGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHCYEDCYLAHERLAIIDPTSGD 60
Query: 61 QPLYNEDKKIVVTVNGEIYNHEALRERLTNHKFRTGSDCDVIAHLYEEYGENFVDMLDGM 120
QPLYNEDK + VTVNGEIYNH+ LRE+L +H+FRTGSDC+VIAHLYEE+GE F+DMLDGM
Sbjct: 61 QPLYNEDKTVAVTVNGEIYNHKILREKLKSHQFRTGSDCEVIAHLYEEHGEEFIDMLDGM 120
Query: 121 FSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLY 180
F+FVLLDTRD SFI ARDAIGIT LYIGWGLDGS+W +SE+K L+DDCE F +FPPGH+Y
Sbjct: 121 FAFVLLDTRDKSFIAARDAIGITPLYIGWGLDGSVWFASEMKALSDDCEQFMSFPPGHIY 180
Query: 181 SSKSGGLKRWYNPTWYSEAIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSL 240
SSK GGL+RWYNP WY+E +PSTPYDPLVLR AFE AVIKRLMTDVPFGVLLSGGLDSSL
Sbjct: 181 SSKQGGLRRWYNPPWYNEQVPSTPYDPLVLRNAFEKAVIKRLMTDVPFGVLLSGGLDSSL 240
Query: 241 VASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGI 300
VA++ RHL ++AARQWG+QLH+FC+GL+GSPDLK +EVADYLGT HHEF FTVQDGI
Sbjct: 241 VAAVALRHLEKSEAARQWGSQLHTFCIGLQGSPDLKAGREVADYLGTRHHEFQFTVQDGI 300
Query: 301 DAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPN 360
DAIEEVIYH+ETYDVTTIRASTPMFLMSRKIKSLGVKMV+SGEGSDEI GGYLYFHKAPN
Sbjct: 301 DAIEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVLSGEGSDEILGGYLYFHKAPN 360
Query: 361 KEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQ 420
K+EFH ETC KIKALHQ+DCLRANKSTSAWG+EARVPFLDK+F+NVAM+IDPEWK+I P
Sbjct: 361 KKEFHEETCRKIKALHQFDCLRANKSTSAWGVEARVPFLDKEFLNVAMSIDPEWKLIKPD 420
Query: 421 EGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVTDKMVQN 480
GRIEKW+LR AFDDEERPYLPKH+LYRQKEQFSDGVGYSWIDGLK HA +HV+D M+ N
Sbjct: 421 LGRIEKWVLRNAFDDEERPYLPKHILYRQKEQFSDGVGYSWIDGLKDHANKHVSDTMLSN 480
Query: 481 AQYIFPHNTPLTKEAYYYRMIFERFFPQ 508
A ++FP NTPLTKEAYYYR IFE+FFP+
Sbjct: 481 ASFVFPDNTPLTKEAYYYRTIFEKFFPK 508
|
Essential for nitrogen assimilation, distribution and remobilization within the plant via the phloem. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 5 EC: . EC: 4 |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 515 | ||||||
| TAIR|locus:2099580 | 584 | ASN1 "glutamine-dependent aspa | 0.986 | 0.869 | 0.846 | 1.1e-245 | |
| TAIR|locus:2177694 | 578 | ASN2 "asparagine synthetase 2" | 0.986 | 0.878 | 0.781 | 7.5e-231 | |
| TAIR|locus:2145377 | 578 | ASN3 "asparagine synthetase 3" | 0.986 | 0.878 | 0.781 | 1.4e-229 | |
| DICTYBASE|DDB_G0286059 | 557 | asns "asparagine synthetase" [ | 0.984 | 0.910 | 0.562 | 2e-159 | |
| TIGR_CMR|CPS_2794 | 554 | CPS_2794 "asparagine synthase | 0.972 | 0.904 | 0.534 | 7.3e-146 | |
| UNIPROTKB|P22106 | 554 | asnB [Escherichia coli K-12 (t | 0.972 | 0.904 | 0.534 | 3.2e-145 | |
| ASPGD|ASPL0000073587 | 571 | AN4401 [Emericella nidulans (t | 0.475 | 0.429 | 0.681 | 1.4e-144 | |
| TIGR_CMR|SO_2767 | 554 | SO_2767 "asparagine synthetase | 0.970 | 0.902 | 0.519 | 2.6e-141 | |
| UNIPROTKB|G4ND55 | 583 | MGG_00969 "Asparagine syntheta | 0.475 | 0.420 | 0.633 | 1.3e-139 | |
| SGD|S000006349 | 572 | ASN1 "Asparagine synthetase" [ | 0.510 | 0.459 | 0.612 | 2.1e-139 |
| TAIR|locus:2099580 ASN1 "glutamine-dependent asparagine synthase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2367 (838.3 bits), Expect = 1.1e-245, P = 1.1e-245
Identities = 430/508 (84%), Positives = 469/508 (92%)
Query: 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGD 60
MCGILAVLGCSDDSQAKRVRVLELSRRL+HRGPDWSGLYQ+GD YLAHQRLA+IDPASGD
Sbjct: 1 MCGILAVLGCSDDSQAKRVRVLELSRRLRHRGPDWSGLYQNGDNYLAHQRLAVIDPASGD 60
Query: 61 QPLYNEDKKIVVTVNGEIYNHEALRERLTNHKFRTGSDCDVIAHLYEEYGENFVDMLDGM 120
QPL+NEDK IVVTVNGEIYNHE LR+RL NHKFRTGSDC+VIAHLYEEYG +FVDMLDG+
Sbjct: 61 QPLFNEDKTIVVTVNGEIYNHEELRKRLKNHKFRTGSDCEVIAHLYEEYGVDFVDMLDGI 120
Query: 121 FSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLY 180
FSFVLLDTRDNSF+VARDAIG+TSLYIGWGLDGS+WISSE+KGLNDDCEHFE FPPGH Y
Sbjct: 121 FSFVLLDTRDNSFMVARDAIGVTSLYIGWGLDGSVWISSEMKGLNDDCEHFETFPPGHFY 180
Query: 181 SSKSGGLKRWYNPTWYSEAIPSTPYDPLVLRQAFENAVIKRLMTDVPFXXXXXXXXXXXX 240
SSK GG K+WYNP W++E++PSTPY+PL +R+AFENAVIKRLMTDVPF
Sbjct: 181 SSKLGGFKQWYNPPWFNESVPSTPYEPLAIRRAFENAVIKRLMTDVPFGVLLSGGLDSSL 240
Query: 241 XXXITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGI 300
ITARHLAGTKAA+QWG QLHSFCVGLEGSPDLK KEVA+YLGTVHHEFHF+VQDGI
Sbjct: 241 VASITARHLAGTKAAKQWGPQLHSFCVGLEGSPDLKAGKEVAEYLGTVHHEFHFSVQDGI 300
Query: 301 DAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPN 360
DAIE+VIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMV+SGEG+DEIFGGYLYFHKAPN
Sbjct: 301 DAIEDVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVLSGEGADEIFGGYLYFHKAPN 360
Query: 361 KEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQ 420
K+EFH+ETC KIKALH+YDCLRANKSTSA+GLEARVPFLDKDFIN AM++DPE KMI P+
Sbjct: 361 KKEFHQETCRKIKALHKYDCLRANKSTSAFGLEARVPFLDKDFINTAMSLDPESKMIKPE 420
Query: 421 EGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVTDKMVQN 480
EGRIEKW+LR+AFDDEERPYLPKH+LYRQKEQFSDGVGYSWIDGLK HA Q+V DKM+ N
Sbjct: 421 EGRIEKWVLRRAFDDEERPYLPKHILYRQKEQFSDGVGYSWIDGLKDHAAQNVNDKMMSN 480
Query: 481 AQYIFPHNTPLTKEAYYYRMIFERFFPQ 508
A +IFPHNTP TKEAYYYRMIFERFFPQ
Sbjct: 481 AGHIFPHNTPNTKEAYYYRMIFERFFPQ 508
|
|
| TAIR|locus:2177694 ASN2 "asparagine synthetase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2227 (789.0 bits), Expect = 7.5e-231, P = 7.5e-231
Identities = 397/508 (78%), Positives = 448/508 (88%)
Query: 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGD 60
MCGILAVLGC D+SQAKR R++ELSRRL+HRGPDWSGL+ + D YLAH+RLAIIDP SGD
Sbjct: 1 MCGILAVLGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHCYEDCYLAHERLAIIDPTSGD 60
Query: 61 QPLYNEDKKIVVTVNGEIYNHEALRERLTNHKFRTGSDCDVIAHLYEEYGENFVDMLDGM 120
QPLYNEDK + VTVNGEIYNH+ LRE+L +H+FRTGSDC+VIAHLYEE+GE F+DMLDGM
Sbjct: 61 QPLYNEDKTVAVTVNGEIYNHKILREKLKSHQFRTGSDCEVIAHLYEEHGEEFIDMLDGM 120
Query: 121 FSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLY 180
F+FVLLDTRD SFI ARDAIGIT LYIGWGLDGS+W +SE+K L+DDCE F +FPPGH+Y
Sbjct: 121 FAFVLLDTRDKSFIAARDAIGITPLYIGWGLDGSVWFASEMKALSDDCEQFMSFPPGHIY 180
Query: 181 SSKSGGLKRWYNPTWYSEAIPSTPYDPLVLRQAFENAVIKRLMTDVPFXXXXXXXXXXXX 240
SSK GGL+RWYNP WY+E +PSTPYDPLVLR AFE AVIKRLMTDVPF
Sbjct: 181 SSKQGGLRRWYNPPWYNEQVPSTPYDPLVLRNAFEKAVIKRLMTDVPFGVLLSGGLDSSL 240
Query: 241 XXXITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGI 300
+ RHL ++AARQWG+QLH+FC+GL+GSPDLK +EVADYLGT HHEF FTVQDGI
Sbjct: 241 VAAVALRHLEKSEAARQWGSQLHTFCIGLQGSPDLKAGREVADYLGTRHHEFQFTVQDGI 300
Query: 301 DAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPN 360
DAIEEVIYH+ETYDVTTIRASTPMFLMSRKIKSLGVKMV+SGEGSDEI GGYLYFHKAPN
Sbjct: 301 DAIEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVLSGEGSDEILGGYLYFHKAPN 360
Query: 361 KEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQ 420
K+EFH ETC KIKALHQ+DCLRANKSTSAWG+EARVPFLDK+F+NVAM+IDPEWK+I P
Sbjct: 361 KKEFHEETCRKIKALHQFDCLRANKSTSAWGVEARVPFLDKEFLNVAMSIDPEWKLIKPD 420
Query: 421 EGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVTDKMVQN 480
GRIEKW+LR AFDDEERPYLPKH+LYRQKEQFSDGVGYSWIDGLK HA +HV+D M+ N
Sbjct: 421 LGRIEKWVLRNAFDDEERPYLPKHILYRQKEQFSDGVGYSWIDGLKDHANKHVSDTMLSN 480
Query: 481 AQYIFPHNTPLTKEAYYYRMIFERFFPQ 508
A ++FP NTPLTKEAYYYR IFE+FFP+
Sbjct: 481 ASFVFPDNTPLTKEAYYYRTIFEKFFPK 508
|
|
| TAIR|locus:2145377 ASN3 "asparagine synthetase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2215 (784.8 bits), Expect = 1.4e-229, P = 1.4e-229
Identities = 397/508 (78%), Positives = 445/508 (87%)
Query: 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGD 60
MCGILAVLGC D+SQAKR R++ELSRRL+HRGPDWSGL+ + D YLAH+RLAI+DP SGD
Sbjct: 1 MCGILAVLGCVDNSQAKRSRIIELSRRLRHRGPDWSGLHCYEDCYLAHERLAIVDPTSGD 60
Query: 61 QPLYNEDKKIVVTVNGEIYNHEALRERLTNHKFRTGSDCDVIAHLYEEYGENFVDMLDGM 120
QPLYNEDK I VTVNGEIYNH+ALRE L +H+FRTGSDC+VIAHLYEE+GE FVDMLDGM
Sbjct: 61 QPLYNEDKTIAVTVNGEIYNHKALRENLKSHQFRTGSDCEVIAHLYEEHGEEFVDMLDGM 120
Query: 121 FSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLY 180
F+FVLLDTRD SFI ARDAIGIT LYIGWGLDGS+W +SE+K L+DDCE F FPPGH+Y
Sbjct: 121 FAFVLLDTRDKSFIAARDAIGITPLYIGWGLDGSVWFASEMKALSDDCEQFMCFPPGHIY 180
Query: 181 SSKSGGLKRWYNPTWYSEAIPSTPYDPLVLRQAFENAVIKRLMTDVPFXXXXXXXXXXXX 240
SSK GGL+RWYNP W+SE +PSTPYDPLV+R FE AVIKRLMTDVPF
Sbjct: 181 SSKQGGLRRWYNPPWFSEVVPSTPYDPLVVRNTFEKAVIKRLMTDVPFGVLLSGGLDSSL 240
Query: 241 XXXITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGI 300
+ RHL ++AA QWG++LH+FC+GL+GSPDLK +EVADYLGT HHE HFTVQDGI
Sbjct: 241 VASVALRHLEKSEAACQWGSKLHTFCIGLKGSPDLKAGREVADYLGTRHHELHFTVQDGI 300
Query: 301 DAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPN 360
DAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMV+SGEGSDEIFGGYLYFHKAPN
Sbjct: 301 DAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVLSGEGSDEIFGGYLYFHKAPN 360
Query: 361 KEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQ 420
K+EFH ETC KIKALHQYDCLRANKSTSAWG+EARVPFLDK+FINVAM+IDPEWKMI P
Sbjct: 361 KKEFHEETCRKIKALHQYDCLRANKSTSAWGVEARVPFLDKEFINVAMSIDPEWKMIRPD 420
Query: 421 EGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVTDKMVQN 480
GRIEKW+LR AFDDE+ PYLPKH+LYRQKEQFSDGVGYSWIDGLK HA +HV++ M+ N
Sbjct: 421 LGRIEKWVLRNAFDDEKNPYLPKHILYRQKEQFSDGVGYSWIDGLKDHANKHVSETMLMN 480
Query: 481 AQYIFPHNTPLTKEAYYYRMIFERFFPQ 508
A ++FP NTPLTKEAYYYR IFE+FFP+
Sbjct: 481 ASFVFPDNTPLTKEAYYYRTIFEKFFPK 508
|
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| DICTYBASE|DDB_G0286059 asns "asparagine synthetase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1553 (551.7 bits), Expect = 2.0e-159, P = 2.0e-159
Identities = 294/523 (56%), Positives = 377/523 (72%)
Query: 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGD 60
MCGILA+L +++ R + L LS RL+HRGPDW+G+YQ D L H+RLAI+ +G
Sbjct: 1 MCGILAILNSLEEASKLRKKALSLSSRLRHRGPDWNGIYQSSDSILTHERLAIVGLENGA 60
Query: 61 QPLYNEDKKIVVTVNGEIYNHEALRERLT---NHKFRTGSDCDVIAHLYEEYGENFVDML 117
QPL NED+ I +TVNGEIYNHE LRE L H F+T SDC+ I HLYE+ G++FV ML
Sbjct: 61 QPLLNEDETIALTVNGEIYNHEKLREDLVATGKHTFKTHSDCEPILHLYEDKGDDFVHML 120
Query: 118 DGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPG 177
DG F+FV+ + + NSF+ ARD IG+ LYIGW DGSIW SSE+K + DDC F+ FPPG
Sbjct: 121 DGDFAFVVYNKKANSFLAARDPIGVVPLYIGWHKDGSIWFSSEMKAIKDDCYKFQPFPPG 180
Query: 178 HLYSSKSGGLKRWYNPTWYSEAIPS--TPYDPLVL---RQAFENAVIKRLMTDVPFXXXX 232
H +SSK+ R+Y P W PS + VL ++AFE AV+ R+M+DVP+
Sbjct: 181 HYFSSKTKEFVRYYKPNWIMGDSPSGVLKSEEQVLPAIKEAFEQAVVSRMMSDVPYGVLL 240
Query: 233 XXXXXXXXXXXITARH----LAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTV 288
I +RH + + +R W ++HSFC+GL+ +PDLK A++VADYL TV
Sbjct: 241 SGGLDSSLVASIVSRHAEQRVEDHEKSRAWWPRIHSFCIGLKDAPDLKAARDVADYLQTV 300
Query: 289 HHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348
HHE+HFTVQ+GIDA+ +VI H+ETYDVTTIRASTPM+ +SRKIK++GVKMV+SGEGSDEI
Sbjct: 301 HHEYHFTVQEGIDALPDVIKHLETYDVTTIRASTPMYFLSRKIKAMGVKMVLSGEGSDEI 360
Query: 349 FGGYLYFHKAPNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAM 408
FGGYLYFH AP+ EFH E C +IKALH +DCLRANKST+AWG+E RVPFLD+ F++VAM
Sbjct: 361 FGGYLYFHNAPDANEFHVECCRRIKALHSFDCLRANKSTAAWGVEVRVPFLDQRFLDVAM 420
Query: 409 AIDPEWKMINPQEG--RIEKWILRKAFDDEE--RPYLPKHVLYRQKEQFSDGVGYSWIDG 464
IDP K+ + +G R+EK+ILRKAF+ +E +PYLP VL+RQKEQFSDGVGYSWIDG
Sbjct: 421 NIDPSHKVCHDDQGKKRMEKYILRKAFETKEGEKPYLPSSVLWRQKEQFSDGVGYSWIDG 480
Query: 465 LKAHAEQHVTDKMVQNAQYIFPHNTPLTKEAYYYRMIFERFFP 507
LK +AE V+D+ + FP +TP TKEA+ YR +FE +P
Sbjct: 481 LKENAENEVSDEEFAKRESYFPDDTPTTKEAFLYRKMFEAIYP 523
|
|
| TIGR_CMR|CPS_2794 CPS_2794 "asparagine synthase (glutamine-hydrolyzing)" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 1425 (506.7 bits), Expect = 7.3e-146, P = 7.3e-146
Identities = 274/513 (53%), Positives = 355/513 (69%)
Query: 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGD 60
MC I +L + A R LE SR L+HRGPDWSG+Y + L H+RL+I+D G
Sbjct: 1 MCSIFGILDIKTGADALRPTALECSRLLRHRGPDWSGIYHSDNAILVHERLSIVDTEHGA 60
Query: 61 QPLYNEDKKIVVTVNGEIYNHEALRERLT-NHKFRTGSDCDVIAHLYEEYGENFVDMLDG 119
QPLYN DK V+ VNGEIYNH+AL L +++F+T SDC+VI LYEE+G FVD L G
Sbjct: 61 QPLYNGDKSNVLAVNGEIYNHKALASALNVDYEFQTASDCEVILPLYEEFGVEFVDKLQG 120
Query: 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHL 179
MF+F++ + +DNS+++ARD IGI LY G+ +G+ +++SE+K L C+ E FPPGH+
Sbjct: 121 MFAFIVYNEKDNSYLIARDHIGIIPLYTGYDSEGNFYVASEMKALMPICKTVEEFPPGHI 180
Query: 180 YSSKSGGLKRWYNPTWYS-EAIPSTPYDPLVLRQAFENAVIKRLMTDVPFXXXXXXXXXX 238
S+ G L+++Y W AI +R+A E +V LMTDVP+
Sbjct: 181 LDSRVGKLQQYYKRNWQEYAAIKDNTTSTTKIREALEESVKSHLMTDVPYGVLLSGGLDS 240
Query: 239 XXXXXIT----ARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHF 294
IT AR + A W ++HSF GL GSPDL A+ VAD +GT+HH F
Sbjct: 241 SLISAITQKFAARRIEDNDLAEAWWPKVHSFACGLAGSPDLIAAQTVADSIGTIHHSVVF 300
Query: 295 TVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354
T Q+GIDA++EVIYH+ETYDVTTIRASTPM+LM+RKIK++G+KMV+SGEG+DEIFGGYLY
Sbjct: 301 TEQEGIDALKEVIYHLETYDVTTIRASTPMYLMARKIKAMGIKMVLSGEGADEIFGGYLY 360
Query: 355 FHKAPNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEW 414
FHKAPN +EFH E K+ LH++DCLRANKS SAWG+EARVPFLDK+F++VAM I+PE
Sbjct: 361 FHKAPNAQEFHEELNRKLDRLHKFDCLRANKSMSAWGIEARVPFLDKNFMDVAMRINPED 420
Query: 415 KMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVT 474
K+ G++EK ILR++F+ YLPK +L+RQKEQFSDGVGYSWIDGLKAH E VT
Sbjct: 421 KLCG--NGKMEKAILRESFEG----YLPKEILWRQKEQFSDGVGYSWIDGLKAHVESLVT 474
Query: 475 DKMVQNAQYIFPHNTPLTKEAYYYRMIFERFFP 507
++ ++NA FP NTP KE YYYR +FE +P
Sbjct: 475 EQQLENAHIRFPVNTPDNKEGYYYRTVFEDKYP 507
|
|
| UNIPROTKB|P22106 asnB [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 1419 (504.6 bits), Expect = 3.2e-145, P = 3.2e-145
Identities = 274/513 (53%), Positives = 358/513 (69%)
Query: 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGD 60
MC I V D+ R + LELSR ++HRGPDWSG+Y + LAH+RL+I+D +G
Sbjct: 1 MCSIFGVFDIKTDAVELRKKALELSRLMRHRGPDWSGIYASDNAILAHERLSIVDVNAGA 60
Query: 61 QPLYNEDKKIVVTVNGEIYNHEALR-ERLTNHKFRTGSDCDVIAHLYEEYGENFVDMLDG 119
QPLYN+ K V+ VNGEIYNH+ALR E ++F+TGSDC+VI LY+E G F+D L G
Sbjct: 61 QPLYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTGSDCEVILALYQEKGPEFLDDLQG 120
Query: 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHL 179
MF+F L D+ +++++ RD +GI LY+G+ G ++++SE+K L C + FP G
Sbjct: 121 MFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVCRTIKEFPAGSY 180
Query: 180 YSSKSGGLKRWYNPTWYS-EAIPSTPYDPLVLRQAFENAVIKRLMTDVPFXXXXXXXXXX 238
S+ G ++ +Y+ W+ +A+ D LRQA E++V LM+DVP+
Sbjct: 181 LWSQDGEIRSYYHRDWFDYDAVKDNVTDKNELRQALEDSVKSHLMSDVPYGVLLSGGLDS 240
Query: 239 XXXXXIT----ARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHF 294
IT AR + + + W QLHSF VGL GSPDLK A+EVA++LGTVHHE HF
Sbjct: 241 SIISAITKKYAARRVEDQERSEAWWPQLHSFAVGLPGSPDLKAAQEVANHLGTVHHEIHF 300
Query: 295 TVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354
TVQ+G+DAI +VIYH+ETYDVTTIRASTPM+LMSRKIK++G+KMV+SGEGSDE+FGGYLY
Sbjct: 301 TVQEGLDAIRDVIYHIETYDVTTIRASTPMYLMSRKIKAMGIKMVLSGEGSDEVFGGYLY 360
Query: 355 FHKAPNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEW 414
FHKAPN +E H ET K+ ALH YDC RANK+ SAWG+EARVPFLDK F++VAM I+P+
Sbjct: 361 FHKAPNAKELHEETVRKLLALHMYDCARANKAMSAWGVEARVPFLDKKFLDVAMRINPQD 420
Query: 415 KMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVT 474
KM G++EK ILR+ F+ YLP V +RQKEQFSDGVGYSWID LK A Q V+
Sbjct: 421 KMCG--NGKMEKHILRECFE----AYLPASVAWRQKEQFSDGVGYSWIDTLKEVAAQQVS 474
Query: 475 DKMVQNAQYIFPHNTPLTKEAYYYRMIFERFFP 507
D+ ++ A++ FP+NTP +KEAY YR IFE FP
Sbjct: 475 DQQLETARFRFPYNTPTSKEAYLYREIFEELFP 507
|
|
| ASPGD|ASPL0000073587 AN4401 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 899 (321.5 bits), Expect = 1.4e-144, Sum P(2) = 1.4e-144
Identities = 171/251 (68%), Positives = 205/251 (81%)
Query: 261 QLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRA 320
QL SF +GL G+PD + A EVA +LGT HH FT++DG++A+ +VIYH+ETYDVTTIRA
Sbjct: 287 QLQSFSIGLPGAPDTEAAMEVAKFLGTKHHALTFTIEDGLNALSDVIYHLETYDVTTIRA 346
Query: 321 STPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKIKALHQYDC 380
STPM+L+SRKIK LGVKMV+SGEGSDEIFGGYLYFH APNKEEFH+ET ++K LH DC
Sbjct: 347 STPMYLLSRKIKGLGVKMVLSGEGSDEIFGGYLYFHAAPNKEEFHKETVRRVKNLHLADC 406
Query: 381 LRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFD--DEE- 437
LRANKSTSAWGLEARVPFLDK FI +M++DP+ KMI + RIEK+ILRKAFD DE
Sbjct: 407 LRANKSTSAWGLEARVPFLDKAFIETSMSVDPQEKMIT--KDRIEKYILRKAFDTSDEPD 464
Query: 438 -RPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVTDKMVQNAQYIFPHNTPLTKEAY 496
PYLP +L+RQKEQFSDGVGYSWIDGLK HAE HVTD+M++N + + + P TKEAY
Sbjct: 465 VEPYLPDKILWRQKEQFSDGVGYSWIDGLKDHAELHVTDEMMKNPKPEWGDDIPTTKEAY 524
Query: 497 YYRMIFERFFP 507
+YRM+F+ FP
Sbjct: 525 WYRMMFDEHFP 535
|
|
| TIGR_CMR|SO_2767 SO_2767 "asparagine synthetase B, glutamine-hydrolyzing" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 1382 (491.5 bits), Expect = 2.6e-141, P = 2.6e-141
Identities = 267/514 (51%), Positives = 360/514 (70%)
Query: 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGD 60
MC I ++L D++ R LE+S+ ++HRGPDWSG+Y LAH+RLAI+D G
Sbjct: 1 MCSIFSILDIQSDAKELRQVALEMSKLMRHRGPDWSGIYASDKAILAHERLAIVDIEHGA 60
Query: 61 QPLYNEDKKIVVTVNGEIYNHEALRERLTN-HKFRTGSDCDVIAHLYEEYGENFVDMLDG 119
QPL ED +++ VNGEIYNH+ L+ +L + + ++T SDC+VI LY+EYG F+D L+G
Sbjct: 61 QPLLTEDGSLILAVNGEIYNHKELKAQLGDKYSYQTNSDCEVILALYQEYGTEFLDKLNG 120
Query: 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPG-H 178
+F+FVL D +++++ RD +GI LY G G+++++SE+K L C+ E F PG +
Sbjct: 121 IFAFVLYDKAKDAYLIGRDHMGIIPLYTGRDAAGNLYVASEMKALMPVCKTVEEFQPGQY 180
Query: 179 LYSSKSGGLKRWYNPTWYS-EAIPSTPYDPLVLRQAFENAVIKRLMTDVPFXXXXXXXXX 237
LYSS + +K +Y W +A+ LR+A E AV ++LM+DVP+
Sbjct: 181 LYSSDAAAVK-YYTRDWQQYDAVKDNGASQEELREALEAAVKRQLMSDVPYGVLLSGGLD 239
Query: 238 XXXXXXITA----RHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFH 293
IT R + W QLHSF VGL+G+PDL AK+VAD +GT+HHE +
Sbjct: 240 SSVISAITQTFAKRRIEDDGETGAWWPQLHSFAVGLKGAPDLIAAKKVADAIGTIHHEIN 299
Query: 294 FTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 353
FT Q+G+DAI+EVIYH+ETYDVTTIRA+TPM+LM+RKIK++G+KMV+SGEG+DE+FGGYL
Sbjct: 300 FTFQEGLDAIKEVIYHLETYDVTTIRAATPMYLMARKIKAMGIKMVLSGEGADELFGGYL 359
Query: 354 YFHKAPNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPE 413
YFHKAPN + FH E K+ LH +DCLRANK+ +AWGLEARVPFLDK+F++VAM I+PE
Sbjct: 360 YFHKAPNAQAFHEELVRKLDKLHLFDCLRANKAMAAWGLEARVPFLDKEFMDVAMRINPE 419
Query: 414 WKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHV 473
KM ++GRIEK ILR+AF+ + LPK V +RQKEQFSDGVGYSWIDGLKAHA + V
Sbjct: 420 AKM--SKDGRIEKHILRQAFEHK----LPKEVAWRQKEQFSDGVGYSWIDGLKAHAAEQV 473
Query: 474 TDKMVQNAQYIFPHNTPLTKEAYYYRMIFERFFP 507
D + NA++ FP+NTP TKEAY+YR FE +P
Sbjct: 474 DDLQLANAKFRFPYNTPETKEAYFYRCFFEEHYP 507
|
|
| UNIPROTKB|G4ND55 MGG_00969 "Asparagine synthetase" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 841 (301.1 bits), Expect = 1.3e-139, Sum P(2) = 1.3e-139
Identities = 159/251 (63%), Positives = 201/251 (80%)
Query: 261 QLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRA 320
QL+SF +GL GSPD K A EVA +LGT HH FT++DG++A+ +VIYH+E+YDVTTIRA
Sbjct: 298 QLNSFSIGLPGSPDNKAALEVAKFLGTKHHVMTFTIEDGLNALSDVIYHLESYDVTTIRA 357
Query: 321 STPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKIKALHQYDC 380
STPM+L+SRKIK++G+KMV+SGEGSDE FGGYLYFH AP+K+ FH ET ++K LH DC
Sbjct: 358 STPMYLLSRKIKAMGIKMVLSGEGSDEAFGGYLYFHNAPDKDAFHDETVRRVKNLHLSDC 417
Query: 381 LRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEE--- 437
LRANKSTSAWGLEARVPFLDK+F+ +AM IDP+ KMI + RIEK+I+RKAFD +
Sbjct: 418 LRANKSTSAWGLEARVPFLDKEFLELAMNIDPKEKMITKE--RIEKYIVRKAFDTSDDPN 475
Query: 438 -RPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVTDKMVQNAQYIFPHNTPLTKEAY 496
PYLP ++L+RQKEQFSDGVGY WID LK +AE VTD+M++N + + + P TKEAY
Sbjct: 476 AEPYLPDNILWRQKEQFSDGVGYGWIDALKDNAEIQVTDEMMKNPKPEWGDDIPDTKEAY 535
Query: 497 YYRMIFERFFP 507
+YR +F+ FP
Sbjct: 536 WYRCMFDEHFP 546
|
|
| SGD|S000006349 ASN1 "Asparagine synthetase" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 874 (312.7 bits), Expect = 2.1e-139, Sum P(2) = 2.1e-139
Identities = 166/271 (61%), Positives = 212/271 (78%)
Query: 246 ARHLAGT----KAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGID 301
ARHLAG K T LHSF +GL +PDL+ A++VA ++G++HHE FT+Q+G+D
Sbjct: 267 ARHLAGIDDDGKLHTAGWTSLHSFAIGLPNAPDLQAARKVAKFIGSIHHEHTFTLQEGLD 326
Query: 302 AIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNK 361
A+++VIYH+ETYDVTTIRASTPMFL+SRKIK+ GVKMV+SGEGSDEIFGGYLYF +AP+
Sbjct: 327 ALDDVIYHLETYDVTTIRASTPMFLLSRKIKAQGVKMVLSGEGSDEIFGGYLYFAQAPSA 386
Query: 362 EEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQE 421
EFH E+ ++K LH DCLRANKST AWGLEARVPFLD++F+ + M IDP KMI P+E
Sbjct: 387 AEFHTESVQRVKNLHLADCLRANKSTMAWGLEARVPFLDREFLQLCMNIDPNEKMIKPKE 446
Query: 422 GRIEKWILRKAFDD----EERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVTDKM 477
GRIEK+ILRKAFD + +PYLP+ +L+RQKEQFSDGVGYSWIDGLK AE ++D+M
Sbjct: 447 GRIEKYILRKAFDTTGEPDAKPYLPEEILWRQKEQFSDGVGYSWIDGLKDTAEAVISDEM 506
Query: 478 VQNAQYIFPHNTPLTKEAYYYRMIFERFFPQ 508
+ + + + P TKEA++YR+ F+ FPQ
Sbjct: 507 FASPKAEWGSDIPTTKEAFWYRLKFDALFPQ 537
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| O24661 | ASNS_TRIVS | 6, ., 3, ., 5, ., 4 | 0.8858 | 0.9864 | 0.8668 | N/A | no |
| P19891 | ASNS_CRIGR | 6, ., 3, ., 5, ., 4 | 0.4058 | 0.9456 | 0.8680 | yes | no |
| Q10MX3 | ASNS1_ORYSJ | 6, ., 3, ., 5, ., 4 | 0.7504 | 0.9864 | 0.8410 | no | no |
| Q1LZA3 | ASNS_BOVIN | 6, ., 3, ., 5, ., 4 | 0.3905 | 0.9436 | 0.8663 | yes | no |
| P08243 | ASNS_HUMAN | 6, ., 3, ., 5, ., 4 | 0.4003 | 0.9456 | 0.8680 | yes | no |
| P49089 | ASNS1_YEAST | 6, ., 3, ., 5, ., 4 | 0.5223 | 0.9844 | 0.8863 | yes | no |
| P49088 | ASNS_RAT | 6, ., 3, ., 5, ., 4 | 0.4003 | 0.9456 | 0.8680 | yes | no |
| Q9LFU1 | ASNS3_ARATH | 6, ., 3, ., 5, ., 4 | 0.8110 | 0.9864 | 0.8788 | no | no |
| P31752 | ASNS_ASPOF | 6, ., 3, ., 5, ., 4 | 0.8681 | 0.9864 | 0.8610 | N/A | no |
| Q54MB4 | ASNS_DICDI | 6, ., 3, ., 5, ., 4 | 0.5869 | 0.9844 | 0.9102 | yes | no |
| P49078 | ASNS1_ARATH | 6, ., 3, ., 5, ., 4 | 0.8759 | 0.9864 | 0.8698 | yes | no |
| Q43011 | ASNS2_ORYSJ | 6, ., 3, ., 5, ., 4 | 0.8011 | 0.9864 | 0.8595 | yes | no |
| P19251 | ASNS1_PEA | 6, ., 3, ., 5, ., 4 | 0.8526 | 0.9864 | 0.8668 | N/A | no |
| P22106 | ASNB_ECOLI | 6, ., 3, ., 5, ., 4 | 0.5555 | 0.9728 | 0.9043 | N/A | no |
| P19252 | ASNS2_PEA | 6, ., 3, ., 5, ., 4 | 0.8681 | 0.9864 | 0.8713 | N/A | no |
| P78753 | ASNS_SCHPO | 6, ., 3, ., 5, ., 4 | 0.5570 | 0.9805 | 0.9066 | yes | no |
| Q5ZJU3 | ASNS_CHICK | 6, ., 3, ., 5, ., 4 | 0.3900 | 0.9572 | 0.8787 | yes | no |
| Q5R6W9 | ASNS_PONAB | 6, ., 3, ., 5, ., 4 | 0.4014 | 0.9436 | 0.8663 | yes | no |
| P49092 | ASNS1_LOTJA | 6, ., 3, ., 5, ., 4 | 0.8740 | 0.9864 | 0.8668 | N/A | no |
| P49093 | ASNS2_LOTJA | 6, ., 3, ., 5, ., 4 | 0.8503 | 0.9864 | 0.8668 | N/A | no |
| P49091 | ASNS_BRAOL | 6, ., 3, ., 5, ., 4 | 0.8644 | 0.9864 | 0.8668 | N/A | no |
| P49094 | ASNS_MAIZE | 6, ., 3, ., 5, ., 4 | 0.7952 | 0.9864 | 0.8668 | N/A | no |
| Q9LV77 | ASNS2_ARATH | 6, ., 3, ., 5, ., 4 | 0.8090 | 0.9864 | 0.8788 | no | no |
| Q61024 | ASNS_MOUSE | 6, ., 3, ., 5, ., 4 | 0.4029 | 0.9572 | 0.8787 | yes | no |
| O24338 | ASNS_SANAU | 6, ., 3, ., 5, ., 4 | 0.8624 | 0.9883 | 0.9695 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 515 | |||
| PLN02549 | 578 | PLN02549, PLN02549, asparagine synthase (glutamine | 0.0 | |
| PRK09431 | 554 | PRK09431, asnB, asparagine synthetase B; Provision | 0.0 | |
| PTZ00077 | 586 | PTZ00077, PTZ00077, asparagine synthetase-like pro | 0.0 | |
| TIGR01536 | 466 | TIGR01536, asn_synth_AEB, asparagine synthase (glu | 1e-158 | |
| COG0367 | 542 | COG0367, AsnB, Asparagine synthase (glutamine-hydr | 1e-151 | |
| cd01991 | 269 | cd01991, Asn_Synthase_B_C, The C-terminal domain o | 4e-80 | |
| cd00712 | 220 | cd00712, AsnB, Glutamine amidotransferases class-I | 2e-73 | |
| pfam00733 | 195 | pfam00733, Asn_synthase, Asparagine synthase | 4e-73 | |
| TIGR03108 | 628 | TIGR03108, eps_aminotran_1, exosortase A system-as | 4e-56 | |
| TIGR03104 | 589 | TIGR03104, trio_amidotrans, asparagine synthase fa | 3e-54 | |
| pfam13537 | 120 | pfam13537, GATase_7, Glutamine amidotransferase do | 8e-53 | |
| cd00352 | 220 | cd00352, Gn_AT_II, Glutamine amidotransferases cla | 9e-49 | |
| pfam13522 | 130 | pfam13522, GATase_6, Glutamine amidotransferase do | 1e-37 | |
| pfam00310 | 223 | pfam00310, GATase_2, Glutamine amidotransferases c | 7e-19 | |
| cd03766 | 181 | cd03766, Gn_AT_II_novel, Gn_AT_II_novel | 5e-14 | |
| COG0034 | 470 | COG0034, PurF, Glutamine phosphoribosylpyrophospha | 5e-13 | |
| cd00714 | 215 | cd00714, GFAT, Glutamine amidotransferases class-I | 4e-10 | |
| cd01910 | 224 | cd01910, Wali7, This domain is present in Wali7, a | 7e-10 | |
| pfam12481 | 228 | pfam12481, DUF3700, Aluminium induced protein | 1e-09 | |
| TIGR01135 | 607 | TIGR01135, glmS, glucosamine--fructose-6-phosphate | 7e-09 | |
| COG0449 | 597 | COG0449, GlmS, Glucosamine 6-phosphate synthetase, | 8e-09 | |
| TIGR01134 | 442 | TIGR01134, purF, amidophosphoribosyltransferase | 2e-08 | |
| PRK09123 | 479 | PRK09123, PRK09123, amidophosphoribosyltransferase | 1e-07 | |
| PRK00331 | 604 | PRK00331, PRK00331, glucosamine--fructose-6-phosph | 3e-07 | |
| TIGR03108 | 628 | TIGR03108, eps_aminotran_1, exosortase A system-as | 6e-07 | |
| PLN02440 | 479 | PLN02440, PLN02440, amidophosphoribosyltransferase | 8e-07 | |
| cd00715 | 252 | cd00715, GPATase_N, Glutamine amidotransferases cl | 5e-06 | |
| PRK08341 | 442 | PRK08341, PRK08341, amidophosphoribosyltransferase | 6e-06 | |
| PRK07272 | 484 | PRK07272, PRK07272, amidophosphoribosyltransferase | 3e-05 | |
| cd01907 | 249 | cd01907, GlxB, Glutamine amidotransferases class-I | 3e-05 | |
| PRK07631 | 475 | PRK07631, PRK07631, amidophosphoribosyltransferase | 4e-05 | |
| PTZ00295 | 640 | PTZ00295, PTZ00295, glucosamine-fructose-6-phospha | 2e-04 | |
| PRK05793 | 469 | PRK05793, PRK05793, amidophosphoribosyltransferase | 2e-04 | |
| cd01909 | 199 | cd01909, betaLS_CarA_N, Glutamine amidotransferase | 3e-04 | |
| cd01986 | 103 | cd01986, Alpha_ANH_like, Adenine nucleotide alpha | 0.002 |
| >gnl|CDD|178164 PLN02549, PLN02549, asparagine synthase (glutamine-hydrolyzing) | Back alignment and domain information |
|---|
Score = 1080 bits (2794), Expect = 0.0
Identities = 437/508 (86%), Positives = 471/508 (92%)
Query: 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGD 60
MCGILAVLGCSDDSQAKR RVLELSRRL+HRGPDWSGLY + D YLAH+RLAI+DP SGD
Sbjct: 1 MCGILAVLGCSDDSQAKRSRVLELSRRLRHRGPDWSGLYGNEDCYLAHERLAIMDPESGD 60
Query: 61 QPLYNEDKKIVVTVNGEIYNHEALRERLTNHKFRTGSDCDVIAHLYEEYGENFVDMLDGM 120
QPLYNEDK IVVT NGEIYNH+ LRE+L HKFRTGSDC+VIAHLYEE+GE FVDMLDGM
Sbjct: 61 QPLYNEDKTIVVTANGEIYNHKELREKLKLHKFRTGSDCEVIAHLYEEHGEEFVDMLDGM 120
Query: 121 FSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLY 180
FSFVLLDTRDNSFI ARD IGIT LYIGWGLDGS+W +SE+K L DDCE FE FPPGH Y
Sbjct: 121 FSFVLLDTRDNSFIAARDHIGITPLYIGWGLDGSVWFASEMKALCDDCERFEEFPPGHYY 180
Query: 181 SSKSGGLKRWYNPTWYSEAIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSL 240
SSK+GG +RWYNP W+SE+IPSTPYDPLVLR+AFE AVIKRLMTDVPFGVLLSGGLDSSL
Sbjct: 181 SSKAGGFRRWYNPPWFSESIPSTPYDPLVLREAFEKAVIKRLMTDVPFGVLLSGGLDSSL 240
Query: 241 VASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGI 300
VASI ARHLA TKAARQWG QLHSFCVGLEGSPDLK A+EVADYLGTVHHEFHFTVQ+GI
Sbjct: 241 VASIAARHLAETKAARQWGQQLHSFCVGLEGSPDLKAAREVADYLGTVHHEFHFTVQEGI 300
Query: 301 DAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPN 360
DAIE+VIYH+ETYDVTTIRASTPMFLMSRKIKSLGVKMV+SGEGSDEIFGGYLYFHKAPN
Sbjct: 301 DAIEDVIYHLETYDVTTIRASTPMFLMSRKIKSLGVKMVLSGEGSDEIFGGYLYFHKAPN 360
Query: 361 KEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQ 420
KEEFH+ETC KIKALHQYDCLRANKSTSAWGLEARVPFLDK+FI+VAM+IDPEWKMI P
Sbjct: 361 KEEFHKETCRKIKALHQYDCLRANKSTSAWGLEARVPFLDKEFIDVAMSIDPEWKMIRPG 420
Query: 421 EGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVTDKMVQN 480
EGRIEKW+LRKAFDDEE PYLPKH+L+RQKEQFSDGVGYSWIDGLKAHAE+HV+D+M N
Sbjct: 421 EGRIEKWVLRKAFDDEEDPYLPKHILWRQKEQFSDGVGYSWIDGLKAHAEKHVSDEMFAN 480
Query: 481 AQYIFPHNTPLTKEAYYYRMIFERFFPQ 508
A + +PHNTP TKEAYYYRMIFE+ FPQ
Sbjct: 481 ASFRYPHNTPTTKEAYYYRMIFEKHFPQ 508
|
Length = 578 |
| >gnl|CDD|236513 PRK09431, asnB, asparagine synthetase B; Provisional | Back alignment and domain information |
|---|
Score = 835 bits (2159), Expect = 0.0
Identities = 295/514 (57%), Positives = 381/514 (74%), Gaps = 12/514 (2%)
Query: 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGD 60
MCGI +L D+ R + LE+SR ++HRGPDWSG+Y + L H+RL+I+D G
Sbjct: 1 MCGIFGILDIKTDADELRKKALEMSRLMRHRGPDWSGIYASDNAILGHERLSIVDVNGGA 60
Query: 61 QPLYNEDKKIVVTVNGEIYNHEALRERLTN-HKFRTGSDCDVIAHLYEEYGENFVDMLDG 119
QPLYNED V+ VNGEIYNH+ LR L + + F+TGSDC+VI LY+E G +F+D LDG
Sbjct: 61 QPLYNEDGTHVLAVNGEIYNHQELRAELGDKYAFQTGSDCEVILALYQEKGPDFLDDLDG 120
Query: 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHL 179
MF+F L D+ +++++ARD IGI LY G+ G+++ +SE+K L C+ + FPPGH
Sbjct: 121 MFAFALYDSEKDAYLIARDPIGIIPLYYGYDEHGNLYFASEMKALVPVCKTIKEFPPGHY 180
Query: 180 YSSKSGGLKRWYNPTWY-SEAIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDS 238
Y SK G R+Y W+ +A+ D LR A E AV KRLM+DVP+GVLLSGGLDS
Sbjct: 181 YWSKDGEFVRYYQRDWFDYDAVKDNVTDKNELRDALEAAVKKRLMSDVPYGVLLSGGLDS 240
Query: 239 SLVASITARHLAG----TKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHF 294
SL+++I ++ A + + W QLHSF VGLEGSPDLK A+EVAD+LGTVHHE HF
Sbjct: 241 SLISAIAKKYAARRIEDDERSEAWWPQLHSFAVGLEGSPDLKAAREVADHLGTVHHEIHF 300
Query: 295 TVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354
TVQ+G+DA+ +VIYH+ETYDVTTIRASTPM+LM+RKIK++G+KMV+SGEG+DE+FGGYLY
Sbjct: 301 TVQEGLDALRDVIYHLETYDVTTIRASTPMYLMARKIKAMGIKMVLSGEGADELFGGYLY 360
Query: 355 FHKAPNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEW 414
FHKAPN +EFH ET K++ALH YDCLRANK+ AWG+EARVPFLDK+F++VAM I+PE
Sbjct: 361 FHKAPNAKEFHEETVRKLRALHMYDCLRANKAMMAWGVEARVPFLDKEFLDVAMRINPED 420
Query: 415 KMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVT 474
KM G++EK ILR+AF+ YLP+ +L+RQKEQFSDGVGYSWID LK A + V+
Sbjct: 421 KMCGN--GKMEKHILREAFEG----YLPESILWRQKEQFSDGVGYSWIDTLKEVAAEQVS 474
Query: 475 DKMVQNAQYIFPHNTPLTKEAYYYRMIFERFFPQ 508
D+ + A++ FP+NTP TKEAY YR IFE FP
Sbjct: 475 DQQLATARFRFPYNTPTTKEAYLYREIFEELFPL 508
|
Length = 554 |
| >gnl|CDD|185431 PTZ00077, PTZ00077, asparagine synthetase-like protein; Provisional | Back alignment and domain information |
|---|
Score = 811 bits (2097), Expect = 0.0
Identities = 302/522 (57%), Positives = 383/522 (73%), Gaps = 14/522 (2%)
Query: 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLY-----QHGDFYLAHQRLAIID 55
MCGILA+ + R + LELS+RL+HRGPDWSG+ LAH+RLAI+D
Sbjct: 1 MCGILAIFNSKGERHELRRKALELSKRLRHRGPDWSGIIVLENSPGTYNILAHERLAIVD 60
Query: 56 PASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYGEN- 112
+ G QPL ++D+ + + NGEIYNH +R L +KF + SDC++I HLY+EYG
Sbjct: 61 LSDGKQPLLDDDETVALMQNGEIYNHWEIRPELEKEGYKFSSNSDCEIIGHLYKEYGPKD 120
Query: 113 FVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFE 172
F + LDGMF+ V+ D + N+F ARD IGI LYIG+ DGSIW SSELK L+D C +
Sbjct: 121 FWNHLDGMFATVIYDMKTNTFFAARDHIGIIPLYIGYAKDGSIWFSSELKALHDQCVEVK 180
Query: 173 AFPPGHLYSSKS--GGLKRWYNPTWYSE--AIPSTPYDPLVLRQAFENAVIKRLMTDVPF 228
FPPGH Y G R+YNP W+ IP+ D +R+A E AV KRLM DVPF
Sbjct: 181 QFPPGHYYDQTKEKGEFVRYYNPNWHDFDHPIPTGEIDLEEIREALEAAVRKRLMGDVPF 240
Query: 229 GVLLSGGLDSSLVASITARHL--AGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLG 286
G+ LSGGLDSS+VA+I A+ + +++ +LHSFC+GLEGSPDLK A++VA+YLG
Sbjct: 241 GLFLSGGLDSSIVAAIVAKLIKNGEIDLSKRGMPKLHSFCIGLEGSPDLKAARKVAEYLG 300
Query: 287 TVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSD 346
T HHEF FTV++GIDA+ +VIYH ETYDVTTIRASTPM+L+SR+IK+LG+KMV+SGEGSD
Sbjct: 301 TEHHEFTFTVEEGIDALPDVIYHTETYDVTTIRASTPMYLLSRRIKALGIKMVLSGEGSD 360
Query: 347 EIFGGYLYFHKAPNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINV 406
E+FGGYLYFHKAPN+EEFHRE K+ LH+YDCLRANK+T AWG+EARVPFLDKDF+
Sbjct: 361 ELFGGYLYFHKAPNREEFHRELVRKLHDLHKYDCLRANKATMAWGIEARVPFLDKDFLEY 420
Query: 407 AMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLK 466
M IDP++KM N EG++EK+ILRKAF+ E+PYLP +L+RQKEQFSDGVGYSWIDGLK
Sbjct: 421 VMNIDPKYKMCNAFEGQMEKYILRKAFEGLEKPYLPDEILWRQKEQFSDGVGYSWIDGLK 480
Query: 467 AHAEQHVTDKMVQNAQYIFPHNTPLTKEAYYYRMIFERFFPQ 508
+AE+ ++D+ A ++FP+NTP TKEAY YR IF + FP
Sbjct: 481 EYAEKKISDQEFSQASFLFPYNTPRTKEAYLYRQIFSKHFPS 522
|
Length = 586 |
| >gnl|CDD|233454 TIGR01536, asn_synth_AEB, asparagine synthase (glutamine-hydrolyzing) | Back alignment and domain information |
|---|
Score = 456 bits (1176), Expect = e-158
Identities = 200/489 (40%), Positives = 271/489 (55%), Gaps = 62/489 (12%)
Query: 4 ILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGD-FYLAHQRLAIIDPASGDQP 62
I D + + +L +S + HRGPD SG+ L H+RLAIID + G QP
Sbjct: 1 IAGFFDLDDKAVEEDEAILRMSDTIAHRGPDASGIEYKDGNAILGHRRLAIIDLSGGAQP 60
Query: 63 LYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYGENFVDMLDGM 120
+ NE K V+ NGEIYNHE LRE L + F+T SD +VI HLYEE+GE VD LDGM
Sbjct: 61 MSNEGKTYVIVFNGEIYNHEELREELEAKGYTFQTDSDTEVILHLYEEWGEECVDRLDGM 120
Query: 121 FSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLY 180
F+F L D+ +ARD GI LY G ++ +SE+K L + FP G
Sbjct: 121 FAFALWDSEKGELFLARDRFGIKPLYYA-YDGGQLYFASEIKALLAHPN-IKPFPDGAAL 178
Query: 181 SSKSG------------------------------GLKRWYNPTWYSEAIPSTPYDPLV- 209
+ G ++R+Y W + + LV
Sbjct: 179 APGFGFVRVPPPSTFFRGVFELEPGHDLPLDDDGLNIERYY---WERRDEHTDSEEDLVD 235
Query: 210 -LRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG 268
LR E+AV +RL+ DVP GVLLSGGLDSSLVA+I R +H+F +G
Sbjct: 236 ELRSLLEDAVKRRLVADVPVGVLLSGGLDSSLVAAIARREAPRG--------PVHTFSIG 287
Query: 269 LEGSPDL---KYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMF 325
EGSPD YA++VAD+LGT HHE F+V++G+DA+ EVIYH+E + TTIRAS P++
Sbjct: 288 FEGSPDFDESPYARKVADHLGTEHHEVLFSVEEGLDALPEVIYHLE--EPTTIRASIPLY 345
Query: 326 LMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKIKALHQYDCLRAN- 384
L+S+ + GVK+V+SGEG+DE+FGGYLYFH+AP E E + L+ LR
Sbjct: 346 LLSKLAREDGVKVVLSGEGADELFGGYLYFHEAPAAEALREELQYLDLELYMPGLLRRKD 405
Query: 385 KSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKH 444
+ + A LE RVPFLD + + A++I PE K+ EK++LR+AF+ YLP+
Sbjct: 406 RMSMAHSLEVRVPFLDHELVEYALSIPPEMKL----RDGKEKYLLREAFEG----YLPEE 457
Query: 445 VLYRQKEQF 453
+L+R KE F
Sbjct: 458 ILWRPKEGF 466
|
This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff [Amino acid biosynthesis, Aspartate family]. Length = 466 |
| >gnl|CDD|223444 COG0367, AsnB, Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 443 bits (1140), Expect = e-151
Identities = 187/519 (36%), Positives = 284/519 (54%), Gaps = 28/519 (5%)
Query: 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGD 60
MCGI +L + + + E+++ L+HRGPD SG++ + L H+RL+I+D + G
Sbjct: 1 MCGIAGIL-NFKNLIDAKSIIEEMTKLLRHRGPDDSGVWISLNALLGHRRLSIVDLSGGR 59
Query: 61 QPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYGENFVDMLD 118
QP+ E K + NGEIYN E LR+ L ++FRT SD +VI LYEE+GE+ V+ L+
Sbjct: 60 QPMIKEGGKYAIVYNGEIYNVEELRKELREAGYEFRTYSDTEVILTLYEEWGEDCVEHLN 119
Query: 119 GMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGL-----NDDCEHFEA 173
GMF+F + D +ARD G+ LY + ++ +SE+K L +
Sbjct: 120 GMFAFAIYDETRQKLFLARDPFGVKPLYYTSK-NENLAFASEIKALLAHPVVRFLRDIKE 178
Query: 174 FPPGHLYS-SKSGGLKRWYNPTWYSEAIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLL 232
PPGHL + G ++R++ + + S LR E+AV +RL+ DVP GV L
Sbjct: 179 LPPGHLLEFTDGGLIRRYWRLSE-KTSKESADELAEHLRSLLEDAVKRRLVADVPVGVFL 237
Query: 233 SGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS--PDLKYAKEVADYLGTVHH 290
SGGLDSSL+A+I A L +F VG E S PD KYA+ VA +LGT HH
Sbjct: 238 SGGLDSSLIAAIAAEELG--------KEGKTTFTVGFEDSDSPDAKYARAVAKFLGTPHH 289
Query: 291 EFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFG 350
E T ++ ++A+ EV+ ++T + AS P++L+SRK ++ G K+V+SGEG+DE+FG
Sbjct: 290 EIILTNEELLNALPEVVKALDTPGG--MAASIPLYLLSRKARAEGEKVVLSGEGADELFG 347
Query: 351 GY-LYFHKAPNKEEFHRETCHKIKALHQYDCL-RANKSTSAWGLEARVPFLDKDFINVAM 408
GY Y AP EE E + AL Y+ L R ++ +A+G+EARVPFLD++ +++A+
Sbjct: 348 GYPPYSRFAPGPEELLNEALRRALALIDYNRLARDDRVAAAFGVEARVPFLDRELVDLAL 407
Query: 409 AIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAH 468
I PE K+ +K R F D LP+ + +R+K F G G I K
Sbjct: 408 KIPPEHKLNRD-RSMAKKLERRVPFSDG--VELPEEIPWREKIAFGYGKGILRIAYEKIL 464
Query: 469 AEQHVTDKMVQNAQYIFPHNTPLTKEAYYYRMIFERFFP 507
+ ++ K + + ++ + + YR+I E F P
Sbjct: 465 PDFILSRKKLGFPKPLWGRYYENSLLLWLYRLIEEEFSP 503
|
Length = 542 |
| >gnl|CDD|238949 cd01991, Asn_Synthase_B_C, The C-terminal domain of Asparagine Synthase B | Back alignment and domain information |
|---|
Score = 250 bits (641), Expect = 4e-80
Identities = 98/286 (34%), Positives = 144/286 (50%), Gaps = 57/286 (19%)
Query: 211 RQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE 270
R+ E+AV +RL +DVP GVLLSGGLDSSLVA++ AR L + S G E
Sbjct: 1 RELLEDAVRRRLRSDVPVGVLLSGGLDSSLVAALAARLLPE-------PVKTFSIGFGFE 53
Query: 271 GSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRK 330
GS + +YA+ VA++LGT HHE FT D + A+ +VI+ + ++ P++L+SR
Sbjct: 54 GSDEREYARRVAEHLGTEHHEVEFTPADLLAALPDVIWE--LDEPFADSSAIPLYLLSRL 111
Query: 331 IKSLGVKMVISGEGSDEIFGGYLYFHKAPNK--------------------EEFHRETCH 370
+ G+K+V+SGEG+DE+FGGY + +AP E E
Sbjct: 112 ARKHGIKVVLSGEGADELFGGYPRYRRAPLARRRRRRLLGLAALARALAGAEGLREELAR 171
Query: 371 KIKALHQYD--------------------CLRANKSTSAWGLEARVPFLDKDFINVAMAI 410
+ LH + LR ++++ A GLE RVPFLD + A+++
Sbjct: 172 DLARLHLLNGAADAAARARDLLTYLLGDLLLRDDRASMAHGLEVRVPFLDHRLVEFALSL 231
Query: 411 DPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDG 456
PE K+ G EK++LR+A LP +L+R K F
Sbjct: 232 PPELKI----RGGREKYLLREAA----AGLLPDEILWRPKRGFQVP 269
|
This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase . Length = 269 |
| >gnl|CDD|238364 cd00712, AsnB, Glutamine amidotransferases class-II (GATase) asparagine synthase_B type | Back alignment and domain information |
|---|
Score = 231 bits (592), Expect = 2e-73
Identities = 80/222 (36%), Positives = 113/222 (50%), Gaps = 33/222 (14%)
Query: 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGDQ 61
CGI ++G D + R + + L HRGPD SG++ L H+RL+IID + G Q
Sbjct: 1 CGIAGIIG-LDGASVDRATLERMLDALAHRGPDGSGIWIDEGVALGHRRLSIIDLSGGAQ 59
Query: 62 PLYNEDKKIVVTVNGEIYNHEALRERLTN--HKFRTGSDCDVIAHLYEEYGENFVDMLDG 119
P+ +ED ++V+ NGEIYN+ LR L H+FRT SD +VI HLYEE+GE+ ++ L+G
Sbjct: 60 PMVSEDGRLVLVFNGEIYNYRELRAELEALGHRFRTHSDTEVILHLYEEWGEDCLERLNG 119
Query: 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCE---------- 169
MF+F L D R +ARD GI LY G G + +SELK L
Sbjct: 120 MFAFALWDKRKRRLFLARDRFGIKPLYYGRD-GGGLAFASELKALLALPGVPRELDEAAL 178
Query: 170 -----------------HFEAFPPGHLYSSKSGGLK--RWYN 192
PPGH + GG++ R+++
Sbjct: 179 AEYLAFQYVPAPRTIFKGIRKLPPGHYLTVDPGGVEIRRYWD 220
|
Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia. Length = 220 |
| >gnl|CDD|216090 pfam00733, Asn_synthase, Asparagine synthase | Back alignment and domain information |
|---|
Score = 230 bits (588), Expect = 4e-73
Identities = 98/243 (40%), Positives = 136/243 (55%), Gaps = 51/243 (20%)
Query: 210 LRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL 269
LR+ +AV +RL DVP GVLLSGGLDSSL+A++ AARQ L +F VG
Sbjct: 2 LRELLRDAVKRRLRADVPVGVLLSGGLDSSLIAAL---------AARQSDPPLKTFSVGF 52
Query: 270 EGSP--DLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLM 327
EGS + YA+ VAD+LGT HHE T ++ +DA+ EVIYH+E ++ P++L+
Sbjct: 53 EGSDYDEAPYAELVADHLGTDHHEIIVTEEELLDALPEVIYHLEEPFG--DSSAIPLYLL 110
Query: 328 SRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKIKALHQYDCLRANKST 387
SR + GVK+V+SGEG+DE+FGGY R ++ +
Sbjct: 111 SRLARK-GVKVVLSGEGADELFGGY-----------------------------RDDRMS 140
Query: 388 SAWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLY 447
A GLE RVPFLD + A+++ PE K+ + EK+ILR+A R LP +L+
Sbjct: 141 MAHGLEVRVPFLDHRLVEFALSLPPELKLRD----GEEKYILREAA----RGILPDEILW 192
Query: 448 RQK 450
R K
Sbjct: 193 RPK 195
|
This family is always found associated with pfam00310. Members of this family catalyze the conversion of aspartate to asparagine. Length = 195 |
| >gnl|CDD|132152 TIGR03108, eps_aminotran_1, exosortase A system-associated amidotransferase 1 | Back alignment and domain information |
|---|
Score = 198 bits (504), Expect = 4e-56
Identities = 117/391 (29%), Positives = 171/391 (43%), Gaps = 56/391 (14%)
Query: 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGD 60
MCGI + + R + ++ HRGPD G++ L H+RL+IID + G
Sbjct: 1 MCGITGIFDLTGQRPIDRDLLRRMNDAQAHRGPDGGGVHVEPGIGLGHRRLSIIDLSGGQ 60
Query: 61 QPLYNEDKKIVVTVNGEIYNHEALRERLT--NHKFRTGSDCDVIAHLYEEYGENFVDMLD 118
QPL+NED +VV NGEIYN + L L H FRT SD +VI H +EE+GE V+
Sbjct: 61 QPLFNEDGSVVVVFNGEIYNFQELVAELQALGHVFRTRSDTEVIVHAWEEWGEACVERFR 120
Query: 119 GMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD----------- 167
GMF+F L D + +ARD +GI LY DG SELK L
Sbjct: 121 GMFAFALWDRNQETLFLARDRLGIKPLYYALLADGWFIFGSELKALTAHPSLPRELDPLA 180
Query: 168 CEHFEAF----------------PPGHLYSSKSGGLKRWYNPTWYSEAIPSTPYDPLVLR 211
E + A+ PGH + + G ++ + P PL
Sbjct: 181 VEDYFAYGYVPDPRTIFKGVKKLEPGHTLTLRRGA-PPARPRCYWD--VSFAPAAPLSEA 237
Query: 212 QA-------FENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHS 264
A AV R++ DVP G LSGG+DSS V ++ A T +++
Sbjct: 238 DALAELIERLREAVRSRMVADVPLGAFLSGGVDSSAVVALM---------AGLSDTPVNT 288
Query: 265 FCVGLEGSP--DLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRAST 322
+ + + YA++VA+ GT +H D ++ + YD +S
Sbjct: 289 CSIAFDDPAFDESAYARQVAERYGT-NHRVETVDPDDFSLVDRL---AGLYDEPFADSSA 344
Query: 323 -PMFLMSRKIKSLGVKMVISGEGSDEIFGGY 352
P + + + V + +SG+G DE+F GY
Sbjct: 345 LPTYRVCELARK-RVTVALSGDGGDELFAGY 374
|
The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins. Length = 628 |
| >gnl|CDD|234108 TIGR03104, trio_amidotrans, asparagine synthase family amidotransferase | Back alignment and domain information |
|---|
Score = 191 bits (488), Expect = 3e-54
Identities = 151/566 (26%), Positives = 224/566 (39%), Gaps = 158/566 (27%)
Query: 1 MCGILAVLGCSD---DSQAKRVRVLE-LSRRLKHRGPDWSGLYQHGDFYLAHQRLAIID- 55
MCGI C + D QA V + + L RGPD G++ G L H+RL IID
Sbjct: 1 MCGI-----CGEIRFDGQAPDVAAVVRMLAVLAPRGPDAGGVHAQGPVALGHRRLKIIDL 55
Query: 56 PASGDQPLYNEDKKIVVTVNGEIYNHEALRERLTN--HKFRTGSDCDVIAHLYEEYGENF 113
+ QP+ + + + + NG IYN+ LR L ++F + D +VI Y +G +
Sbjct: 56 SEASQQPMVDPELGLALVFNGCIYNYRELRAELEALGYRFFSDGDTEVILKAYHAWGRDC 115
Query: 114 VDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYI------------------GWGLDGSI 155
V +GMF+F + + ++ARD +GI LY G+D I
Sbjct: 116 VSRFNGMFAFAIWERDSGRLLLARDRLGIKPLYYAEDAGRLRFASSLPALLAAGGVDTDI 175
Query: 156 WISSELKGLNDDCEHFEAF-----------------PPGHLYSSKSGGLKRWYNPTWYSE 198
+ L+ H+ F PP + + G +++S
Sbjct: 176 ----DPVALH----HYLTFHAVVPAPHTILKGVRKLPPATWMTVEPDG--SRTQRSYWSL 225
Query: 199 AIPSTPYDPL--------VLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLA 250
P D + +A AV +RL+ DVP GVLLSGGLDSSL+ + A A
Sbjct: 226 DAGRPPDDAARTEADWQDAILEALRLAVKRRLVADVPVGVLLSGGLDSSLIVGLLAE--A 283
Query: 251 GTKAARQWGTQLHSFCVGLEGSP-----DLKYAKEVADYLGTVHHEFHFTVQDGIDAIEE 305
G L +F +G E + +Y+ +A+ T HH+ + A+ E
Sbjct: 284 GVDG-------LRTFSIGFEDVGGEKGDEFEYSDIIAERFHTRHHKIRIPNHRVLPALPE 336
Query: 306 VIYHVETYDVTTIRA-STPMF--------LMSRKIKSLGVKMVISGEGSDEIFGGYLYFH 356
+ A S PM L+S ++ S VK+V SG+G+DE+FGGY ++
Sbjct: 337 -----------AVAAMSEPMVSHDCVAFYLLSEEV-SKHVKVVQSGQGADEVFGGYHWYP 384
Query: 357 K---------APNKEEF----HRETCHKIK-ALHQYDCL--------------------- 381
A + F H E + H D
Sbjct: 385 PLAAGSGDPVAAYRRAFFDRDHAEYLEMVGPRFHAEDVSGEFVADHFARPGADTAVDQAL 444
Query: 382 --------------RANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKW 427
R + T AWGLEARVPFLD + + +A I PE K+ G K
Sbjct: 445 RLDTTVMLVDDPVKRVDNMTMAWGLEARVPFLDHELVELAARIPPELKL--ADGG---KG 499
Query: 428 ILRKAFDDEERPYLPKHVLYRQKEQF 453
+L++A R +P V+ R K F
Sbjct: 500 VLKEA----ARGVIPSEVIDRPKGYF 521
|
Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases. Length = 589 |
| >gnl|CDD|222208 pfam13537, GATase_7, Glutamine amidotransferase domain | Back alignment and domain information |
|---|
Score = 174 bits (443), Expect = 8e-53
Identities = 56/119 (47%), Positives = 76/119 (63%), Gaps = 3/119 (2%)
Query: 48 HQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYNHEALRERLT--NHKFRTGSDCDVIAHL 105
H+RL+I D G QP+ +ED + V+ NGEIYN+ LR L ++FRT SD +VI HL
Sbjct: 1 HRRLSIDDSEGGAQPMVSEDGRYVIVFNGEIYNYRELRAELEAKGYRFRTHSDTEVILHL 60
Query: 106 YEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGL 164
YEE+GE+ +D L+GMF+F + D R+ +ARD GI LY G G + +SELK L
Sbjct: 61 YEEWGEDCLDRLNGMFAFAIWDRREGRLFLARDRFGIKPLYYGKD-GGGLLFASELKAL 118
|
This domain is a class-II glutamine amidotransferase domain found in a variety of enzymes such as asparagine synthetase and glutamine-fructose-6-phosphate transaminase. Length = 120 |
| >gnl|CDD|238212 cd00352, Gn_AT_II, Glutamine amidotransferases class-II (GATase) | Back alignment and domain information |
|---|
Score = 167 bits (424), Expect = 9e-49
Identities = 68/220 (30%), Positives = 92/220 (41%), Gaps = 41/220 (18%)
Query: 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGD------------------ 43
CGI ++G + + +L L+HRGPD +G+ +
Sbjct: 1 CGIFGIVGADGAASLLLLLLLRGLAALEHRGPDGAGIAVYDGDGLFVEKRAGPVSDVALD 60
Query: 44 ---------FYLAHQRLAIIDPAS--GDQPLYNEDKKIVVTVNGEIYNHEALRERLTN-- 90
L H RLA S QP +ED +I + NGEIYN+ LRE L
Sbjct: 61 LLDEPLKSGVALGHVRLATNGLPSEANAQPFRSEDGRIALVHNGEIYNYRELREELEARG 120
Query: 91 HKFRTGSDCDVIAHLYEEYG---------ENFVDMLDGMFSFVLLDTRDNSFIVARDAIG 141
++F SD +VI HL E G E+ + LDG F+F L D + + ARD G
Sbjct: 121 YRFEGESDSEVILHLLERLGREGGLFEAVEDALKRLDGPFAFALWDGKPDRLFAARDRFG 180
Query: 142 ITSLYIGWGLDGSIWISSELKGLNDDC-EHFEAFPPGHLY 180
I LY G DG + +SE K L + PPG L
Sbjct: 181 IRPLYYGITKDGGLVFASEPKALLALPFKGVRRLPPGELL 220
|
The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the formation of the beta-lactam ring in the beta-lactamase inhibitor clavulanic acid. GltS synthesizes L-glutamate from 2-oxoglutarate and L-glutamine. These enzymes are generally dimers, but GPATase also exists as a homotetramer. Length = 220 |
| >gnl|CDD|222195 pfam13522, GATase_6, Glutamine amidotransferase domain | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 1e-37
Identities = 58/131 (44%), Positives = 81/131 (61%), Gaps = 4/131 (3%)
Query: 33 PDWSGLYQHGDFYLAHQRLAIID-PASGDQPLYNEDKKIVVTVNGEIYNHEALRERLTN- 90
PD+SGL+ G L H RLAI+D +G QP+ + D ++V+ NGEIYN LRE L
Sbjct: 1 PDFSGLWVDGGIALGHVRLAIVDLSEAGAQPMLSADGRLVLVHNGEIYNFGELREELPAK 60
Query: 91 -HKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGW 149
H FR+ SD +V+ LYEE+GE+ ++ L GMF+F + D R + +ARD +GI LY G
Sbjct: 61 GHAFRSRSDSEVLLALYEEWGEDALERLRGMFAFAIWDKRRKTLFLARDRLGIKPLYYGV 120
Query: 150 GLDGSIWISSE 160
G + +SE
Sbjct: 121 -TGGGLLFASE 130
|
This domain is a class-II glutamine amidotransferase domain found in a variety of enzymes, such as asparagine synthetase and glutamine--fructose-6-phosphate transaminase. Length = 130 |
| >gnl|CDD|215851 pfam00310, GATase_2, Glutamine amidotransferases class-II | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 7e-19
Identities = 51/227 (22%), Positives = 70/227 (30%), Gaps = 73/227 (32%)
Query: 2 CGILAVL--GCSDDSQAKRVRVLELSRRLKHRGP------DWSG---------------- 37
CGIL + S LE RL+HRG D +G
Sbjct: 1 CGILGFIAHIKGKASHDVVEDALEALERLEHRGGVGADGNDGAGILTQIPDGFGAPSERR 60
Query: 38 LYQH---------GDFYL-----------AHQRLAI--IDPASGDQPLYNEDKKIVVTVN 75
L+ +FYL H R + P E V+ N
Sbjct: 61 LFVIRKRGEKSIVAEFYLQDERFKSALAIVHTRFSTNGFPSWENAHPFRRE--GWVLAHN 118
Query: 76 GEIYNHEALRERLTN--HKFRTGSDCDVIAHLYE-------------------EYGENFV 114
GEI LR + F +GSD + +L E EY +
Sbjct: 119 GEINTLRGLRNWMRAREGVFNSGSDSEAFDNLLELLVRAGRSPDMDPEERAFYEYLAGLM 178
Query: 115 DMLDGMFSFVLLDTRDNSFIVA-RDAIGITSLYIGWGLDGSIWISSE 160
+ DG + V D R ++ A D G+ G DG I ++SE
Sbjct: 179 EPWDGPAALVFTDGR---YVGATLDRNGLRPARYGITEDGLIVVASE 222
|
Length = 223 |
| >gnl|CDD|239735 cd03766, Gn_AT_II_novel, Gn_AT_II_novel | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 5e-14
Identities = 47/191 (24%), Positives = 71/191 (37%), Gaps = 21/191 (10%)
Query: 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG-DFYLAH---QRLAIIDP 56
MCGIL + S + EL L++RGPD+ Q + L++
Sbjct: 1 MCGILCSVSPSGPHINSSLLSEELLPNLRNRGPDYLSTRQLSVTNWTLLFTSSVLSLRGD 60
Query: 57 ASGDQPLYNEDKKIVVTVNGEIYNHEALRERLTNHKFRTGSDCDVIAHLYEEYGENFVDM 116
QPL ++ V+ NGE+YN + +D +VI L D+
Sbjct: 61 HVTRQPLVDQSTGNVLQWNGELYN--------IDGVEDEENDTEVIFELLANCSSESQDI 112
Query: 117 LD------GMFSFVLLDTRDNSFIVARDAIGITSLYIGW-GLDGSIWISSELKGLNDDCE 169
LD G F+F+ D +N RD +G SL + ISS +
Sbjct: 113 LDVLSSIEGPFAFIYYDASENKLYFGRDCLGRRSLLYKLDPNGFELSISSVSGSSSGS-- 170
Query: 170 HFEAFPPGHLY 180
F+ G +Y
Sbjct: 171 GFQEVLAGGIY 181
|
This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the formation of the beta-lactam ring in the beta-lactamase inhibitor clavulanic acid. GltS synthesizes L-glutamate from 2-oxoglutarate and L-glutamine. These enzymes are generally dimers, but GPATase also exists as a homotetramer. Length = 181 |
| >gnl|CDD|223112 COG0034, PurF, Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 5e-13
Identities = 50/203 (24%), Positives = 78/203 (38%), Gaps = 47/203 (23%)
Query: 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSG--------LYQH----------- 41
MCG+ + G D+ A ++ L L+HRG + +G + H
Sbjct: 4 MCGVFGIWG-HKDNNAAQLTYYGL-YALQHRGQEAAGIAVADGKRFHTHKGMGLVSDVFN 61
Query: 42 ---------GDFYLAHQRLAIIDPASGD--QPLY--NEDKKIVVTVNGEIYNHEALRERL 88
G+ + H R + +S + QP Y + I + NG + N E LR L
Sbjct: 62 ERDLLRKLQGNVGIGHVRYSTAGSSSIENAQPFYVNSPGGGIALAHNGNLVNAEELRREL 121
Query: 89 TN--HKFRTGSDCDVIAHLY---------EEYGENFVDMLDGMFSFVLLDTRDNSFIVAR 137
F T SD +V+ HL E + + + G ++ V L + I R
Sbjct: 122 EEEGAIFNTTSDSEVLLHLLARELDEDDIFEAVKEVLRRVKGAYALVALI--KDGLIAVR 179
Query: 138 DAIGITSLYIGWGLDGSIWISSE 160
D GI L +G DG ++SE
Sbjct: 180 DPNGIRPLVLGKLGDGFYVVASE 202
|
Length = 470 |
| >gnl|CDD|238366 cd00714, GFAT, Glutamine amidotransferases class-II (Gn-AT)_GFAT-type | Back alignment and domain information |
|---|
Score = 59.4 bits (145), Expect = 4e-10
Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 17/113 (15%)
Query: 62 PLYNEDKKIVVTVNGEIYNHEALRERLTN--HKFRTGSDCDVIAHLYEEY---GENFVD- 115
P + D +I V NG I N+ L+E L +KF + +D +VIAHL E Y G + ++
Sbjct: 86 PHRSCDGEIAVVHNGIIENYAELKEELEAKGYKFESETDTEVIAHLIEYYYDGGLDLLEA 145
Query: 116 ------MLDGMFSFVLLDTRD-NSFIVARDAIGITSLYIGWGLDGSIWISSEL 161
L+G ++ ++ + + + AR+ + L IG G DG +++S+
Sbjct: 146 VKKALKRLEGAYALAVISKDEPDEIVAARNG---SPLVIGIG-DGENFVASDA 194
|
This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin. Length = 215 |
| >gnl|CDD|238891 cd01910, Wali7, This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 7e-10
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Query: 117 LDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDC-EHFEAFP 175
L+G F+FVL D + ++ VA DA G LY G DGS+ S +++ + C + F FP
Sbjct: 125 LEGSFAFVLYDKKTSTVFVASDADGSVPLYWGIAADGSVVFSDDVELVKASCGKSFAPFP 184
Query: 176 PGHLYSSKSGGLKRWYNPTWYSEAIP 201
G + S GGL+ + +P +A+P
Sbjct: 185 KGCFFHS-EGGLRSFEHPMNKLKAVP 209
|
Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits. Length = 224 |
| >gnl|CDD|221596 pfam12481, DUF3700, Aluminium induced protein | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 1e-09
Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 6/88 (6%)
Query: 117 LDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGL--DGSIWISSELKGLNDDC-EHFEA 173
L+G F+FVL D++ + VA DA G L+ WG+ DGS+ S +L+ L C + F
Sbjct: 129 LEGSFAFVLYDSKTGTVFVALDADGSVPLF--WGIAADGSLVFSDDLELLKAGCGKSFAP 186
Query: 174 FPPGHLYSSKSGGLKRWYNPTWYSEAIP 201
FP G +SS GGL+ + +P +A+P
Sbjct: 187 FPQGCFFSS-EGGLRSFEHPMNKLKAVP 213
|
This domain family is found in eukaryotes, and is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR. This family is related to GATase enzyme domains. Length = 228 |
| >gnl|CDD|130205 TIGR01135, glmS, glucosamine--fructose-6-phosphate aminotransferase (isomerizing) | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 7e-09
Identities = 52/200 (26%), Positives = 82/200 (41%), Gaps = 50/200 (25%)
Query: 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLY---------------------- 39
CGI+ +G A + +LE +RL++RG D +G+
Sbjct: 1 CGIVGYIG---QRDAVPI-LLEGLKRLEYRGYDSAGIAVVDEGKLFVRKAVGKVQELANK 56
Query: 40 -----QHGDFYLAHQRLAIIDPAS--GDQPLYNEDKKIVVTVNGEIYNHEALRERLTN-- 90
G + H R A + P +E +I V NG I N+ LRE L
Sbjct: 57 LGEKPLPGGVGIGHTRWATHGKPTEENAHPHTDEGGRIAVVHNGIIENYAELREELEARG 116
Query: 91 HKFRTGSDCDVIAHLYEEY---GENFVD-------MLDGMFSFVLLDTRD-NSFIVARDA 139
H F + +D +VIAHL EEY G + ++ L G ++ +L + + AR
Sbjct: 117 HVFVSDTDTEVIAHLIEEYLREGGDLLEAVQKALKQLRGAYALAVLHADHPETLVAARSG 176
Query: 140 IGITSLYIGWGLDGSIWISS 159
+ L +G G DG +++S
Sbjct: 177 ---SPLIVGLG-DGENFVAS 192
|
The member from Methanococcus jannaschii contains an intein [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Central intermediary metabolism, Amino sugars]. Length = 607 |
| >gnl|CDD|223526 COG0449, GlmS, Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 8e-09
Identities = 50/215 (23%), Positives = 91/215 (42%), Gaps = 45/215 (20%)
Query: 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGD----FYLAHQRLAIIDP 56
MCGI+ +G +A + +LE +RL++RG D +G+ GD +++ ++
Sbjct: 1 MCGIVGYIG--FLREAIDI-LLEGLKRLEYRGYDSAGIAVVGDGSLNVRKQVGKISNLEE 57
Query: 57 ASGDQPL----------------YNE-------DKKIVVTVNGEIYNHEALRERLTN--H 91
+PL D + V NG I N L+E L +
Sbjct: 58 LLNKEPLIGGVGIAHTRWATHGGPTRANAHPHSDGEFAVVHNGIIENFAELKEELEAKGY 117
Query: 92 KFRTGSDCDVIAHLYEE-YGENFVD-------MLDGMFSFVLLDTRD-NSFIVARDAIGI 142
F++ +D +VIAHL EE Y + ++ L+G ++ + + + + AR
Sbjct: 118 VFKSDTDTEVIAHLLEEIYDTSLLEAVKKVLKRLEGSYALLCTHSDFPDELVAARKG--- 174
Query: 143 TSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPG 177
+ L IG G +G +++S++ L + F G
Sbjct: 175 SPLVIGVG-EGENFLASDVSALLNFTRRFVYLEEG 208
|
Length = 597 |
| >gnl|CDD|233285 TIGR01134, purF, amidophosphoribosyltransferase | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 2e-08
Identities = 40/142 (28%), Positives = 56/142 (39%), Gaps = 17/142 (11%)
Query: 61 QPLY-NEDKKIVVTVNGEIYNHEALRERLTN--HKFRTGSDCDVIAHLYEEYGENFVDML 117
QP N I + NG + N E LRE L F T SD +V+ HL D+
Sbjct: 86 QPFVVNSPGGIALAHNGNLVNAEELREELEEEGRIFNTTSDSEVLLHLLARERLEEDDLF 145
Query: 118 D----------GMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLND- 166
+ G ++ V++ + I RD GI L +G DG ++SE L+
Sbjct: 146 EAIARVLKRVRGAYALVIMI--GDGLIAVRDPHGIRPLVLGKRGDG-YVVASESCALDIL 202
Query: 167 DCEHFEAFPPGHLYSSKSGGLK 188
E PG GGL+
Sbjct: 203 GAEFIRDVEPGEAVVIDDGGLE 224
|
Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 442 |
| >gnl|CDD|236384 PRK09123, PRK09123, amidophosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 1e-07
Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 15/112 (13%)
Query: 61 QPLYNEDK--KIVVTVNGEIYNHEALRERLTNHK--FRTGSDCDVIAHL-----YEEYGE 111
QPL+ E + + + NG + N LR L F++ SD +VI HL + +
Sbjct: 107 QPLFAELEFGGLAIAHNGNLTNALTLRRELIRRGAIFQSTSDTEVILHLIARSRKASFLD 166
Query: 112 NFVDML---DGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSE 160
F+D L +G +S V L T I ARD +GI L +G LDGS ++SE
Sbjct: 167 RFIDALRQVEGAYSLVAL-TN-TKLIGARDPLGIRPLVLG-ELDGSPILASE 215
|
Length = 479 |
| >gnl|CDD|234729 PRK00331, PRK00331, glucosamine--fructose-6-phosphate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Score = 52.7 bits (128), Expect = 3e-07
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 62 PLYNEDKKIVVTVNGEIYNHEALRERLTN--HKFRTGSDCDVIAHLYEEYGENFVD---- 115
P + +I V NG I N+ L+E L H F++ +D +VIAHL EE + D
Sbjct: 87 PHTDCSGRIAVVHNGIIENYAELKEELLAKGHVFKSETDTEVIAHLIEEELKEGGDLLEA 146
Query: 116 ------MLDGMFSFVLLDTRD-NSFIVAR 137
L+G ++ ++D + ++ + AR
Sbjct: 147 VRKALKRLEGAYALAVIDKDEPDTIVAAR 175
|
Length = 604 |
| >gnl|CDD|132152 TIGR03108, eps_aminotran_1, exosortase A system-associated amidotransferase 1 | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 6e-07
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 8/73 (10%)
Query: 382 RANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYL 441
+ ++++ A GLE RVP LD + A + P+ K+ G K++L+KA RPYL
Sbjct: 498 KVDRASMAHGLEVRVPLLDHRLVEWAAGLPPDLKL----RGGEGKYLLKKAM----RPYL 549
Query: 442 PKHVLYRQKEQFS 454
P VLYR K FS
Sbjct: 550 PDDVLYRPKMGFS 562
|
The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins. Length = 628 |
| >gnl|CDD|215241 PLN02440, PLN02440, amidophosphoribosyltransferase | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 8e-07
Identities = 52/206 (25%), Positives = 78/206 (37%), Gaps = 57/206 (27%)
Query: 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGL--------------------YQ 40
CG++ + G D +A R+ L L L+HRG + +G+ +
Sbjct: 1 ECGVVGIFG---DPEASRLCYLGLHA-LQHRGQEGAGIVTVDGNRLQSITGNGLVSDVFD 56
Query: 41 H-------GDFYLAHQRLAIIDPASGD------QPLYNEDK--KIVVTVNGEIYNHEALR 85
GD + H R +G QP + I V NG + N+E LR
Sbjct: 57 ESKLDQLPGDIAIGHVRY----STAGASSLKNVQPFVANYRFGSIGVAHNGNLVNYEELR 112
Query: 86 ERLTNHK--FRTGSDCDVIAHLY-EEYGENFVD-------MLDGMFSFVLLDTRDNSFIV 135
+L + F T SD +V+ HL F L G +S V L +V
Sbjct: 113 AKLEENGSIFNTSSDTEVLLHLIAISKARPFFSRIVDACEKLKGAYSMVFL---TEDKLV 169
Query: 136 A-RDAIGITSLYIGWGLDGSIWISSE 160
A RD G L +G +G++ +SE
Sbjct: 170 AVRDPHGFRPLVMGRRSNGAVVFASE 195
|
Length = 479 |
| >gnl|CDD|238367 cd00715, GPATase_N, Glutamine amidotransferases class-II (GN-AT)_GPAT- type | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 5e-06
Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 15/113 (13%)
Query: 61 QPLYNE--DKKIVVTVNGEIYNHEALRERLTN--HKFRTGSDCDVIAHL--YEEYGENFV 114
QP I + NG + N + LRE L F+T SD +VI HL ++
Sbjct: 85 QPFVVNSPLGGIALAHNGNLVNAKELREELEEEGRIFQTTSDSEVILHLIARSLAKDDLF 144
Query: 115 D-------MLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSE 160
+ + G +S V++ + I RD GI L +G ++SE
Sbjct: 145 EAIIDALERVKGAYSLVIMT--ADGLIAVRDPHGIRPLVLGKLEGDGYVVASE 195
|
This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer. Length = 252 |
| >gnl|CDD|181395 PRK08341, PRK08341, amidophosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 6e-06
Identities = 59/228 (25%), Positives = 89/228 (39%), Gaps = 51/228 (22%)
Query: 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGL--YQH------------------ 41
CGI A S+++ K L L+HRG + +G+ ++H
Sbjct: 5 CGIFAAY--SENAPKKAYYAL---IALQHRGQEGAGISVWRHRIRTVKGHGLVSEVFKGG 59
Query: 42 ------GDFYLAHQRLAIIDPASGDQPLYNE--DKKIVVTVNGEIYNHEALRERLTNH-- 91
+ + H R + S QPL E KI + NG + N LR + +
Sbjct: 60 SLSRLKSNLAIGHVRYSTSGSLSEVQPLEVECCGYKIAIAHNGTLTNFLPLRRKYESRGV 119
Query: 92 KFRTGSDCDVIA-----HLYEEYGENFVDM------LDGMFSFVLLDTRDNSFIVARDAI 140
KFR+ D ++I H Y E G+ F M + G +S +L D IVARD +
Sbjct: 120 KFRSSVDTELIGISFLWH-YSETGDEFEAMREVFNEVKGAYSVAIL--FDGKIIVARDPV 176
Query: 141 GITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLK 188
G L G G DG + +SE L PG ++ G ++
Sbjct: 177 GFRPLSYGEG-DGH-YFASEDSALRMFVNEIRDVFPGEVFVVSEGEVE 222
|
Length = 442 |
| >gnl|CDD|235984 PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 3e-05
Identities = 50/201 (24%), Positives = 80/201 (39%), Gaps = 48/201 (23%)
Query: 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSG--------LYQH------------ 41
CG+ + G D +Q + L L+HRG + +G L H
Sbjct: 12 CGVFGIWGHPDAAQ---LTYFGL-HSLQHRGQEGAGIVSNDNGKLKGHRDLGLLSEVFKD 67
Query: 42 --------GDFYLAHQRLAIIDPASGD--QP-LYN-EDKKIVVTVNGEIYNHEALRERLT 89
G + H R A AS + QP L++ D + + NG + N +LR+ L
Sbjct: 68 PADLDKLTGQAAIGHVRYATAGSASIENIQPFLFHFHDMQFGLAHNGNLTNAVSLRKELE 127
Query: 90 NHK--FRTGSDCDVIAHLYEEY-GENFVDMLD-------GMFSFVLLDTRDNSFIVARDA 139
F + SD +++ HL F+ L G F+++LL ++ I A D
Sbjct: 128 KQGAIFHSSSDTEILMHLIRRSHNPTFMGKLKEALNTVKGGFAYLLL--TEDKLIAALDP 185
Query: 140 IGITSLYIGWGLDGSIWISSE 160
G L IG +G+ ++SE
Sbjct: 186 NGFRPLSIGKMKNGAYVVASE 206
|
Length = 484 |
| >gnl|CDD|238888 cd01907, GlxB, Glutamine amidotransferases class-II (Gn-AT)_GlxB-type | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 3e-05
Identities = 31/122 (25%), Positives = 47/122 (38%), Gaps = 34/122 (27%)
Query: 75 NGEIYNHEALRERLTNH--KFRTGSDCDVIAH----LYEEYG------------------ 110
NGEI N+ + RE L KF T +D +VIA+ L + G
Sbjct: 110 NGEISNYGSNREYLERFGYKFETETDTEVIAYYLDLLLRKGGLPLEYYKHIIRMPEEERE 169
Query: 111 -------ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKG 163
+ LDG F+ ++ + FIV RD I + + D + I+SE
Sbjct: 170 LLLALRLTYRLADLDGPFTIIV--GTPDGFIVIRDRIKLRPAVVA-ETDDYVAIASEECA 226
Query: 164 LN 165
+
Sbjct: 227 IR 228
|
GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits. Length = 249 |
| >gnl|CDD|181061 PRK07631, PRK07631, amidophosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 4e-05
Identities = 47/188 (25%), Positives = 79/188 (42%), Gaps = 47/188 (25%)
Query: 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGL--------------------YQH 41
CG+ + G + A ++ L L+HRG + +G+ +Q+
Sbjct: 12 CGVFGIWGHEE---AAQITYYGL-HSLQHRGQEGAGIVVTDGGKLSAHKGLGLVTEVFQN 67
Query: 42 GDFYLAHQRLAI----IDPASGD-----QPLY--NEDKKIVVTVNGEIYNHEALRERLTN 90
G+ + AI A G QPL ++ + + NG + N L+ +L N
Sbjct: 68 GELDALKGKAAIGHVRYATAGGGGYENVQPLLFRSQTGSLALAHNGNLVNATQLKLQLEN 127
Query: 91 HK--FRTGSDCDVIAHL--------YEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAI 140
F+T SD +V+AHL +E +N + ML G ++F+L+ + VA D
Sbjct: 128 QGSIFQTTSDTEVLAHLIKRSGAPTLKEQIKNALSMLKGAYAFLLMTETE--LYVALDPN 185
Query: 141 GITSLYIG 148
G+ L IG
Sbjct: 186 GLRPLSIG 193
|
Length = 475 |
| >gnl|CDD|240349 PTZ00295, PTZ00295, glucosamine-fructose-6-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 58/211 (27%), Positives = 89/211 (42%), Gaps = 61/211 (28%)
Query: 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSG----------------------- 37
CGI+ LG D S+ +LE L++RG D G
Sbjct: 24 CCGIVGYLGNEDASKI----LLEGIEILQNRGYDSCGISTISSGGELKTTKYASDGTTSD 79
Query: 38 ---------LYQHGDFY--LAHQRLAIIDPASGDQ---PLYNEDKKIVVTVNGEIYNHEA 83
L H + +AH R A + D+ P + K+I + NG I N+
Sbjct: 80 SIEILKEKLLDSHKNSTIGIAHTRWATHGGKT-DENAHPHCDYKKRIALVHNGTIENYVE 138
Query: 84 LRERLTNH--KFRTGSDCDVIAHL---YEEYGENFVDM-------LDGMFSFVLLDTRDN 131
L+ L KFR+ +D +VIA+L + GE+F + L G + ++ +DN
Sbjct: 139 LKSELIAKGIKFRSETDSEVIANLIGLELDQGEDFQEAVKSAISRLQGTWGLCIIH-KDN 197
Query: 132 --SFIVARDAIGITSLYIGWGLDGSIWISSE 160
S IVAR+ + L +G G D SI+++SE
Sbjct: 198 PDSLIVARNG---SPLLVGIG-DDSIYVASE 224
|
Length = 640 |
| >gnl|CDD|235611 PRK05793, PRK05793, amidophosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 11/115 (9%)
Query: 61 QPLYNEDKK--IVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG-----E 111
QPL K I + NG + N + +RE L F+T D +VI +L +
Sbjct: 101 QPLVANYKLGSIAIAHNGNLVNADVIRELLEDGGRIFQTSIDSEVILNLIARSAKKGLEK 160
Query: 112 NFVD-MLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLN 165
VD + S+ L+ ++ I RD GI L +G L +SSE L+
Sbjct: 161 ALVDAIQAIKGSYALVILTEDKLIGVRDPHGIRPLCLG-KLGDDYILSSESCALD 214
|
Length = 469 |
| >gnl|CDD|238890 cd01909, betaLS_CarA_N, Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 3e-04
Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 15/124 (12%)
Query: 76 GEIYNHEALRERLTNHKFRTG--SDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSF 133
GE+YN + LR L + R+ D +++ L G + + +G F F ++ +
Sbjct: 58 GELYNRDELRSLLGAGEGRSAVLGDAELLLLLLTRLGLHAFRLAEGDFCFF-IEDGNGRL 116
Query: 134 IVARDAIGITSLYIGWGLDGSIWISSELKGL----NDDCEHFE-----AFPPG-HLYSSK 183
+A D G +Y+ G +W ++ELK L F+ +
Sbjct: 117 TLATDHAGSVPVYL--VQAGEVWATTELKLLAAHEGPKAFPFKSAGADTVSGLTGVQRVP 174
Query: 184 SGGL 187
G +
Sbjct: 175 PGTV 178
|
Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and glutamate synthase (GltS). This fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits. Length = 199 |
| >gnl|CDD|238944 cd01986, Alpha_ANH_like, Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases | Back alignment and domain information |
|---|
Score = 37.5 bits (87), Expect = 0.002
Identities = 28/135 (20%), Positives = 43/135 (31%), Gaps = 47/135 (34%)
Query: 230 VLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVH 289
V SGG DSS+ A++ ++ G Q+ + V SP L+ AKE+A
Sbjct: 3 VAFSGGKDSSVAAAL----------LKKLGYQVIAVTVDHGISPRLEDAKEIAK------ 46
Query: 290 HEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIF 349
+A EE R K G + + +G D++
Sbjct: 47 -----------EAREEA--------------------AKRIAKEKGAETIATGTRRDDVA 75
Query: 350 GGYLYFHKAPNKEEF 364
L N
Sbjct: 76 NRALGLTALLNLTVT 90
|
The domain forms a apha/beta/apha fold which binds to Adenosine group.. Length = 103 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 515 | |||
| KOG0571 | 543 | consensus Asparagine synthase (glutamine-hydrolyzi | 100.0 | |
| PLN02549 | 578 | asparagine synthase (glutamine-hydrolyzing) | 100.0 | |
| PRK09431 | 554 | asnB asparagine synthetase B; Provisional | 100.0 | |
| PTZ00077 | 586 | asparagine synthetase-like protein; Provisional | 100.0 | |
| TIGR03104 | 589 | trio_amidotrans asparagine synthase family amidotr | 100.0 | |
| TIGR03108 | 628 | eps_aminotran_1 exosortase 1 system-associated ami | 100.0 | |
| TIGR01536 | 467 | asn_synth_AEB asparagine synthase (glutamine-hydro | 100.0 | |
| COG0367 | 542 | AsnB Asparagine synthase (glutamine-hydrolyzing) [ | 100.0 | |
| KOG0573 | 520 | consensus Asparagine synthase [Amino acid transpor | 100.0 | |
| cd01991 | 269 | Asn_Synthase_B_C The C-terminal domain of Asparagi | 100.0 | |
| cd00712 | 220 | AsnB Glutamine amidotransferases class-II (GATase) | 100.0 | |
| PF00733 | 255 | Asn_synthase: Asparagine synthase; InterPro: IPR00 | 100.0 | |
| cd03766 | 181 | Gn_AT_II_novel Gn_AT_II_novel. This asparagine syn | 100.0 | |
| PRK08525 | 445 | amidophosphoribosyltransferase; Provisional | 100.0 | |
| PRK07631 | 475 | amidophosphoribosyltransferase; Provisional | 100.0 | |
| PRK09123 | 479 | amidophosphoribosyltransferase; Provisional | 100.0 | |
| PRK07272 | 484 | amidophosphoribosyltransferase; Provisional | 100.0 | |
| cd00714 | 215 | GFAT Glutamine amidotransferases class-II (Gn-AT)_ | 100.0 | |
| PRK06388 | 474 | amidophosphoribosyltransferase; Provisional | 100.0 | |
| PRK07349 | 500 | amidophosphoribosyltransferase; Provisional | 100.0 | |
| PRK08341 | 442 | amidophosphoribosyltransferase; Provisional | 100.0 | |
| PRK06781 | 471 | amidophosphoribosyltransferase; Provisional | 100.0 | |
| PRK07847 | 510 | amidophosphoribosyltransferase; Provisional | 100.0 | |
| PLN02440 | 479 | amidophosphoribosyltransferase | 100.0 | |
| PRK05793 | 469 | amidophosphoribosyltransferase; Provisional | 100.0 | |
| cd00715 | 252 | GPATase_N Glutamine amidotransferases class-II (GN | 100.0 | |
| PRK00331 | 604 | glucosamine--fructose-6-phosphate aminotransferase | 100.0 | |
| cd01907 | 249 | GlxB Glutamine amidotransferases class-II (Gn-AT)_ | 100.0 | |
| PRK09246 | 501 | amidophosphoribosyltransferase; Provisional | 99.98 | |
| TIGR01134 | 442 | purF amidophosphoribosyltransferase. Alternate nam | 99.97 | |
| TIGR01135 | 607 | glmS glucosamine--fructose-6-phosphate aminotransf | 99.97 | |
| cd01909 | 199 | betaLS_CarA_N Glutamine amidotransferases class-II | 99.97 | |
| cd00352 | 220 | Gn_AT_II Glutamine amidotransferases class-II (GAT | 99.97 | |
| PTZ00295 | 640 | glucosamine-fructose-6-phosphate aminotransferase; | 99.97 | |
| cd01910 | 224 | Wali7 This domain is present in Wali7, a protein o | 99.96 | |
| PF13537 | 125 | GATase_7: Glutamine amidotransferase domain; PDB: | 99.96 | |
| PLN02981 | 680 | glucosamine:fructose-6-phosphate aminotransferase | 99.95 | |
| PTZ00394 | 670 | glucosamine-fructose-6-phosphate aminotransferase; | 99.95 | |
| COG0034 | 470 | PurF Glutamine phosphoribosylpyrophosphate amidotr | 99.95 | |
| KOG0572 | 474 | consensus Glutamine phosphoribosylpyrophosphate am | 99.94 | |
| PF13522 | 133 | GATase_6: Glutamine amidotransferase domain | 99.94 | |
| COG0449 | 597 | GlmS Glucosamine 6-phosphate synthetase, contains | 99.93 | |
| TIGR03442 | 251 | conserved hypothetical protein TIGR03442. Members | 99.8 | |
| KOG1268 | 670 | consensus Glucosamine 6-phosphate synthetases, con | 99.75 | |
| PF00310 | 361 | GATase_2: Glutamine amidotransferases class-II; In | 99.71 | |
| cd01908 | 257 | YafJ Glutamine amidotransferases class-II (Gn-AT)_ | 99.7 | |
| cd00713 | 413 | GltS Glutamine amidotransferases class-II (Gn-AT), | 99.67 | |
| cd01996 | 154 | Alpha_ANH_like_III This is a subfamily of Adenine | 99.47 | |
| PF12481 | 228 | DUF3700: Aluminium induced protein ; InterPro: IPR | 99.45 | |
| TIGR03573 | 343 | WbuX N-acetyl sugar amidotransferase. This enzyme | 99.37 | |
| COG0067 | 371 | GltB Glutamate synthase domain 1 [Amino acid trans | 99.23 | |
| COG1606 | 269 | ATP-utilizing enzymes of the PP-loop superfamily [ | 99.15 | |
| TIGR00268 | 252 | conserved hypothetical protein TIGR00268. The N-te | 99.11 | |
| PRK11750 | 1485 | gltB glutamate synthase subunit alpha; Provisional | 99.1 | |
| PF13230 | 271 | GATase_4: Glutamine amidotransferases class-II; PD | 99.1 | |
| cd00553 | 248 | NAD_synthase NAD+ synthase is a homodimer, which c | 99.02 | |
| PRK14561 | 194 | hypothetical protein; Provisional | 99.02 | |
| TIGR00552 | 250 | nadE NAD+ synthetase. NAD+ synthetase is a nearly | 98.97 | |
| cd01990 | 202 | Alpha_ANH_like_I This is a subfamily of Adenine nu | 98.94 | |
| PRK13980 | 265 | NAD synthetase; Provisional | 98.93 | |
| PRK00876 | 326 | nadE NAD synthetase; Reviewed | 98.91 | |
| PRK00143 | 346 | mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed | 98.87 | |
| COG0482 | 356 | TrmU Predicted tRNA(5-methylaminomethyl-2-thiourid | 98.87 | |
| cd01998 | 349 | tRNA_Me_trans tRNA methyl transferase. This family | 98.85 | |
| cd01993 | 185 | Alpha_ANH_like_II This is a subfamily of Adenine n | 98.84 | |
| PF03054 | 356 | tRNA_Me_trans: tRNA methyl transferase; InterPro: | 98.82 | |
| PRK14665 | 360 | mnmA tRNA-specific 2-thiouridylase MnmA; Provision | 98.8 | |
| PF06508 | 209 | QueC: Queuosine biosynthesis protein QueC; InterPr | 98.8 | |
| COG0603 | 222 | Predicted PP-loop superfamily ATPase [General func | 98.79 | |
| PRK11106 | 231 | queuosine biosynthesis protein QueC; Provisional | 98.78 | |
| PRK04527 | 400 | argininosuccinate synthase; Provisional | 98.74 | |
| PRK14664 | 362 | tRNA-specific 2-thiouridylase MnmA; Provisional | 98.73 | |
| TIGR00420 | 352 | trmU tRNA (5-methylaminomethyl-2-thiouridylate)-me | 98.69 | |
| PRK00509 | 399 | argininosuccinate synthase; Provisional | 98.68 | |
| TIGR00884 | 311 | guaA_Cterm GMP synthase (glutamine-hydrolyzing), C | 98.66 | |
| cd01712 | 177 | ThiI ThiI is required for thiazole synthesis in th | 98.65 | |
| PTZ00323 | 294 | NAD+ synthase; Provisional | 98.64 | |
| PRK00919 | 307 | GMP synthase subunit B; Validated | 98.62 | |
| PF02540 | 242 | NAD_synthase: NAD synthase; InterPro: IPR022310 NA | 98.61 | |
| PRK10696 | 258 | tRNA 2-thiocytidine biosynthesis protein TtcA; Pro | 98.57 | |
| TIGR00364 | 201 | exsB protein. This protein family is represented b | 98.55 | |
| PRK08349 | 198 | hypothetical protein; Validated | 98.51 | |
| PRK13981 | 540 | NAD synthetase; Provisional | 98.51 | |
| PRK13820 | 394 | argininosuccinate synthase; Provisional | 98.51 | |
| TIGR02432 | 189 | lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t | 98.48 | |
| cd01999 | 385 | Argininosuccinate_Synthase Argininosuccinate synth | 98.46 | |
| PRK00768 | 268 | nadE NAD synthetase; Reviewed | 98.46 | |
| PLN00200 | 404 | argininosuccinate synthase; Provisional | 98.45 | |
| cd01997 | 295 | GMP_synthase_C The C-terminal domain of GMP synthe | 98.44 | |
| COG0037 | 298 | MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle | 98.42 | |
| cd01986 | 103 | Alpha_ANH_like Adenine nucleotide alpha hydrolases | 98.41 | |
| PRK00074 | 511 | guaA GMP synthase; Reviewed | 98.41 | |
| KOG2805 | 377 | consensus tRNA (5-methylaminomethyl-2-thiouridylat | 98.35 | |
| cd01992 | 185 | PP-ATPase N-terminal domain of predicted ATPase of | 98.32 | |
| PF09147 | 201 | DUF1933: Domain of unknown function (DUF1933); Int | 98.31 | |
| PLN02347 | 536 | GMP synthetase | 98.31 | |
| PRK01565 | 394 | thiamine biosynthesis protein ThiI; Provisional | 98.3 | |
| TIGR00032 | 394 | argG argininosuccinate synthase. argG in bacteria, | 98.29 | |
| PF01171 | 182 | ATP_bind_3: PP-loop family; InterPro: IPR011063 Th | 98.28 | |
| PRK08384 | 381 | thiamine biosynthesis protein ThiI; Provisional | 98.24 | |
| TIGR00342 | 371 | thiazole biosynthesis/tRNA modification protein Th | 98.22 | |
| PRK02628 | 679 | nadE NAD synthetase; Reviewed | 98.19 | |
| cd01995 | 169 | ExsB ExsB is a transcription regulator related pro | 98.15 | |
| COG2117 | 198 | Predicted subunit of tRNA(5-methylaminomethyl-2-th | 98.14 | |
| cd01713 | 173 | PAPS_reductase This domain is found in phosphoaden | 98.09 | |
| cd01994 | 194 | Alpha_ANH_like_IV This is a subfamily of Adenine n | 98.08 | |
| COG0171 | 268 | NadE NAD synthase [Coenzyme metabolism] | 98.05 | |
| TIGR03679 | 218 | arCOG00187 arCOG00187 universal archaeal metal-bin | 98.04 | |
| PRK01269 | 482 | tRNA s(4)U8 sulfurtransferase; Provisional | 98.03 | |
| PRK05253 | 301 | sulfate adenylyltransferase subunit 2; Provisional | 98.0 | |
| COG0121 | 252 | Predicted glutamine amidotransferase [General func | 97.97 | |
| PRK08576 | 438 | hypothetical protein; Provisional | 97.89 | |
| PF02568 | 197 | ThiI: Thiamine biosynthesis protein (ThiI); InterP | 97.84 | |
| PF00764 | 388 | Arginosuc_synth: Arginosuccinate synthase; InterPr | 97.82 | |
| COG1365 | 255 | Predicted ATPase (PP-loop superfamily) [General fu | 97.81 | |
| PRK10660 | 436 | tilS tRNA(Ile)-lysidine synthetase; Provisional | 97.8 | |
| PRK05370 | 447 | argininosuccinate synthase; Validated | 97.68 | |
| PLN02339 | 700 | NAD+ synthase (glutamine-hydrolysing) | 97.52 | |
| COG0137 | 403 | ArgG Argininosuccinate synthase [Amino acid transp | 97.47 | |
| COG0367 | 542 | AsnB Asparagine synthase (glutamine-hydrolyzing) [ | 97.38 | |
| TIGR02039 | 294 | CysD sulfate adenylyltransferase, small subunit. I | 97.35 | |
| PRK02090 | 241 | phosphoadenosine phosphosulfate reductase; Provisi | 97.3 | |
| COG0519 | 315 | GuaA GMP synthase, PP-ATPase domain/subunit [Nucle | 97.27 | |
| PRK08557 | 417 | hypothetical protein; Provisional | 96.92 | |
| PF01507 | 174 | PAPS_reduct: Phosphoadenosine phosphosulfate reduc | 96.83 | |
| COG0301 | 383 | ThiI Thiamine biosynthesis ATP pyrophosphatase [Co | 96.8 | |
| PRK12563 | 312 | sulfate adenylyltransferase subunit 2; Provisional | 96.8 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 96.6 | |
| PRK13795 | 636 | hypothetical protein; Provisional | 96.45 | |
| PRK13794 | 479 | hypothetical protein; Provisional | 96.31 | |
| cd01984 | 86 | AANH_like Adenine nucleotide alpha hydrolases supe | 96.29 | |
| TIGR00289 | 222 | conserved hypothetical protein TIGR00289. Homologo | 96.2 | |
| KOG1706 | 412 | consensus Argininosuccinate synthase [Amino acid t | 96.16 | |
| TIGR00434 | 212 | cysH phosophoadenylyl-sulfate reductase (thioredox | 96.07 | |
| TIGR02057 | 226 | PAPS_reductase phosphoadenosine phosphosulfate red | 95.68 | |
| PRK06850 | 507 | hypothetical protein; Provisional | 95.55 | |
| TIGR03183 | 447 | DNA_S_dndC putative sulfurtransferase DndC. Member | 95.11 | |
| KOG1622 | 552 | consensus GMP synthase [Nucleotide transport and m | 94.86 | |
| COG0175 | 261 | CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotr | 94.8 | |
| COG2102 | 223 | Predicted ATPases of PP-loop superfamily [General | 93.9 | |
| PF01902 | 218 | ATP_bind_4: ATP-binding region; InterPro: IPR00276 | 92.61 | |
| COG3969 | 407 | Predicted phosphoadenosine phosphosulfate sulfotra | 92.45 | |
| TIGR00290 | 223 | MJ0570_dom MJ0570-related uncharacterized domain. | 91.62 | |
| KOG2303 | 706 | consensus Predicted NAD synthase, contains CN hydr | 86.2 |
| >KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-112 Score=821.90 Aligned_cols=506 Identities=68% Similarity=1.153 Sum_probs=475.1
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEECCEEEEEeeeeecCCCCCCCceeeCCCcEEEEEeeEEcC
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYN 80 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nGei~n 80 (515)
||||+.++..+ .+.........+...+.|||||.+|.+......++|.||+|+++..+.||+.+.++.+++..||||||
T Consensus 1 MCGI~Av~~~~-~~~~~~~~~l~ls~~~~hRgpd~sg~~~~~~~~l~heRLAIvdp~sg~QPi~~~~~~~~~~vNGEIYN 79 (543)
T KOG0571|consen 1 MCGILAVLGHE-DSEAKKPKALELSRRIRHRGPDWSGLAQRNDNILGHERLAIVDPTSGAQPIVGEDGTYVVTVNGEIYN 79 (543)
T ss_pred CCceeeeeccc-chhhcChhhhhHHHhhcCCCCCcchhheeccccccccceeEecCCcCCcccccCCCcEEEEECceecc
Confidence 99999999832 22222334455667899999999999998888999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCCccCCChHHHHHHHHHHH-HHhhhhccccceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEc
Q 010213 81 HEALRERLTNHKFRTGSDCDVIAHLYEEY-GENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISS 159 (515)
Q Consensus 81 ~~~L~~~l~~~~~~~~~D~e~i~~~~~~~-G~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faS 159 (515)
|.+|++.+..+.|+|.||+|+|+++|++. +.++...|+|+|||+++|...++++++||+.|++||||+++.++.++|||
T Consensus 80 H~~Lr~~~~~~~~~T~sDcEvIi~lY~khg~~~~~~~LDG~Fafvl~d~~~~kv~~aRDpiGv~~lY~g~~~~gs~~~aS 159 (543)
T KOG0571|consen 80 HKKLREHCKDFEFQTGSDCEVIIHLYEKHGGEQAICMLDGVFAFVLLDTKDDKVVAARDPIGVTPLYYGWDSDGSVYFAS 159 (543)
T ss_pred HHHHHHHhhhcccccCCCceeeeehHhhcCchhHHHHhhhheEEEEecCCCCeEEeccCCcCceeeEEEecCCCcEEEee
Confidence 99999999779999999999999999999 68999999999999999999899999999999999999998889999999
Q ss_pred CcccccccCCcceEeCCCeEEEecCCceEEeeCCCCCcCCCCCCCCcHHHHHHHHHHHHHHhhccccceEEeecCCcchH
Q 010213 160 ELKGLNDDCEHFEAFPPGHLYSSKSGGLKRWYNPTWYSEAIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSS 239 (515)
Q Consensus 160 e~~~l~~~~~~i~~l~pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs 239 (515)
|+|.|...|+.|...||||++..+.+++.+|++|+|.....|+.+.....+|+.|.+||++||.+++|+||+||||||||
T Consensus 160 e~k~l~d~C~~i~~fpPgh~y~~~~~~~~r~f~p~w~~~~~~s~p~d~~~~r~~~~~aV~KRLM~d~p~GvLLSGGLDSS 239 (543)
T KOG0571|consen 160 EMKCLEDDCEKIESFPPGHYYTSKTGKLTRYFNPEWFDENIPSTPLDYLALRHTLEKAVRKRLMTDVPFGVLLSGGLDSS 239 (543)
T ss_pred ehhhhhhhhhceeecCCcceeecccccccCCCCchhhhccCCCCcccHHHHHHHHHHHHHHHhhccCceeEEeeCCchHH
Confidence 99999999999999999999999988999999999988878888878888999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccccccCCCceeeEEeecCCCChHHHHHHHHHHhCCCceEEEeChhHHHHHHHHHHHhhccCCCCccc
Q 010213 240 LVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIR 319 (515)
Q Consensus 240 ~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~ 319 (515)
+||++|++.+.+.+. +.+.++++|++|+++++|...|++||+++|+.||++.++.++.+++++++++++|++++++++
T Consensus 240 LvAsia~R~lk~~~~--~~~~~lhsFaIGle~SPDL~aarkVAd~igt~Hhe~~ft~qegidal~eVI~hLETYDvttIR 317 (543)
T KOG0571|consen 240 LVASIAARELKKAQA--ARGSKLHSFAIGLEDSPDLLAARKVADFIGTIHHEHTFTIQEGIDALDEVIYHLETYDVTTIR 317 (543)
T ss_pred HHHHHHHHHHHHhhh--hcCCCceEEEecCCCChhHHHHHHHHHHhCCcceEEEEcHHHHHHHHHHHheeeeccccceEe
Confidence 999999998764321 224689999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhCCCeEEEeccCccccccCCccccCCCChHHHHHHHHHHHHhhcccccccccccccccCceeccCCC
Q 010213 320 ASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFL 399 (515)
Q Consensus 320 ~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~~~~~~~~~~~~~~~~~~~~~l~~~~l~r~d~~~~~~g~e~r~Pfl 399 (515)
++++||+++++++.+|++++|||+|+||+||||.+|+++|+.+.|++|.+++++.||.+|++|.|+.+|+||+|+|+|||
T Consensus 318 astpmyLlsr~Ikk~gvkmvlSGEGsDEifggYlYfh~APs~~~fh~E~~rrvk~Lh~~DcLRankST~a~GlE~RVPFL 397 (543)
T KOG0571|consen 318 ASTPMYLLSRKIKKLGVKMVLSGEGSDEIFGGYLYFHKAPSAEEFHEESVRRVKHLHLYDCLRANKSTMAHGLEARVPFL 397 (543)
T ss_pred cCCchHHHHHHHHhcceEEEEecCCchhhhcceeeeecCCCHHHHHHHHHHHHHHHHHHHHhhcCccccccceeeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHcCCccccccCCCCCcchhHHHHHhhccCCCCCCChhhhhcccCCCCCCCchhhHHHHHHHHHHhcChHHHH
Q 010213 400 DKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVTDKMVQ 479 (515)
Q Consensus 400 D~~lve~~~~lP~~~k~~~~~~~~~~K~lLR~a~~~~~~~~lP~~i~~R~K~~f~~~~~~~~~~~~~~~~~~~l~~~~l~ 479 (515)
|.+++++|++||+++|+.....++++||+||.||...++|+||++|+||.|.+|..++|.+|++.+++.++..++|..++
T Consensus 398 Dk~F~~~~~sldPe~K~~k~~~~r~eK~vlrsafd~~~~pyLP~eilwrqkeqfsdgVgySwid~L~d~~e~~isd~m~a 477 (543)
T KOG0571|consen 398 DKRFLELAMSLDPEEKMIKPKEGRIEKYVLRSAFDTTEKPYLPDEILWRQKEQFSDGVGYSWIDGLKDHAEKQISDAMFA 477 (543)
T ss_pred cHHHHHHHhcCChhHhcCCcchhhHHHHHHHhhcCCcCCCcChHHHHHHHHhhhccccchHHHHHHHHHHHHhcCHHHHh
Confidence 99999999999999999765445789999999999999999999999999999999999999999999999999999999
Q ss_pred hcCccCCCCCCChHHHHHHHHHHhhhCCCc
Q 010213 480 NAQYIFPHNTPLTKEAYYYRMIFERFFPQV 509 (515)
Q Consensus 480 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (515)
+..-..++++|.|||.||||+||+++||++
T Consensus 478 ~a~~~fp~ntP~TkEayyYR~iFe~~fp~~ 507 (543)
T KOG0571|consen 478 NAAAEFPDNTPTTKEAYYYRQIFERFFPQK 507 (543)
T ss_pred ChHhhCCCCCCCchhHHHHHHHHHHHCCcc
Confidence 999999999999999999999999999983
|
|
| >PLN02549 asparagine synthase (glutamine-hydrolyzing) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-109 Score=879.44 Aligned_cols=511 Identities=86% Similarity=1.415 Sum_probs=458.8
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEECCEEEEEeeeeecCCCCCCCceeeCCCcEEEEEeeEEcC
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYN 80 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nGei~n 80 (515)
||||+|+++.+.......+.+..|+..|+|||||++|++..++++|||+||+|+|+..+.||+.++++++++++||||||
T Consensus 1 MCGI~g~~~~~~~~~~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~Lgh~RLsI~d~~~g~QP~~~~~~~~~lv~NGEIyN 80 (578)
T PLN02549 1 MCGILAVLGCSDDSQAKRSRVLELSRRLRHRGPDWSGLYGNEDCYLAHERLAIMDPESGDQPLYNEDKTIVVTANGEIYN 80 (578)
T ss_pred CCcEEEEEeCCCCcchhHHHHHHHHHHhcCcCCCccCEEEeCCeEEEEeeeeEeCCCCCCCCcCcCCCCEEEEEEEEEEc
Confidence 99999999765443223456789999999999999999999999999999999998889999999999999999999999
Q ss_pred hHHHHHHhcCCCccCCChHHHHHHHHHHHHHhhhhccccceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcC
Q 010213 81 HEALRERLTNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSE 160 (515)
Q Consensus 81 ~~~L~~~l~~~~~~~~~D~e~i~~~~~~~G~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe 160 (515)
+.+|+++|..+.|++.||+|+|+++|++||.+++++|+|+|||++||.++++++++||++|+|||||++..++.++||||
T Consensus 81 ~~eLr~~L~~~~f~t~sD~Evil~ly~~~G~~~~~~L~G~FAf~i~D~~~~~l~~aRD~~GikPLyyg~~~~g~~~fASE 160 (578)
T PLN02549 81 HKELREKLKLHKFRTGSDCEVIAHLYEEHGEEFVDMLDGMFSFVLLDTRDNSFIAARDHIGITPLYIGWGLDGSVWFASE 160 (578)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhCCCceEEEEEECCCCEEEEEECCCCCCCeEEEEecCCeEEEEec
Confidence 99999999448899999999999999999999999999999999999998999999999999999998754678999999
Q ss_pred cccccccCCcceEeCCCeEEEecCCceEEeeCCCCCcCCCCCCCCcHHHHHHHHHHHHHHhhccccceEEeecCCcchHH
Q 010213 161 LKGLNDDCEHFEAFPPGHLYSSKSGGLKRWYNPTWYSEAIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSL 240 (515)
Q Consensus 161 ~~~l~~~~~~i~~l~pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~ 240 (515)
+|+|...+++|+.|||||++.++.++..+||++.+.....++.++..++++++|.+||++|+.+|+|+|++||||+|||+
T Consensus 161 ~KaL~~~~~~I~~lpPGh~l~~~~~~~~~y~~~~~~~~~~~~~~~~~~~lr~~L~~aV~~rl~sdvpvgv~LSGGLDSSl 240 (578)
T PLN02549 161 MKALCDDCERFEEFPPGHYYSSKAGGFRRWYNPPWFSESIPSTPYDPLVLREAFEKAVIKRLMTDVPFGVLLSGGLDSSL 240 (578)
T ss_pred HHHHHHHhCCEEEeCCCeEEEEcCCCEEEEEecccCccccCCchhHHHHHHHHHHHHHHHHhccCCceeEeecCCccHHH
Confidence 99999999999999999999887667889999876543334445677899999999999999999999999999999999
Q ss_pred HHHHHHHHhccccccccCCCceeeEEeecCCCChHHHHHHHHHHhCCCceEEEeChhHHHHHHHHHHHhhccCCCCcccc
Q 010213 241 VASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRA 320 (515)
Q Consensus 241 iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~ 320 (515)
|++++++...+......|+.+++|||+++++++|..+|+++|+++|++|+++.++.+++.+.+++++++++++++..++.
T Consensus 241 Iaala~~~~~~~~~~~~~~~~l~tfsig~~~~~D~~~Ar~vA~~lg~~h~ev~~~~~e~~~~l~~~i~~le~~dp~~~~~ 320 (578)
T PLN02549 241 VASIAARHLAETKAARQWGQQLHSFCVGLEGSPDLKAAREVADYLGTVHHEFHFTVQEGIDAIEDVIYHLETYDVTTIRA 320 (578)
T ss_pred HHHHHHHhhhhcccccccCCCceEEecCCCCCCHHHHHHHHHHHhCCCCeEEEEChHHHHHHHHHHHHHhcCCCCccchh
Confidence 99999987543211111224799999999999999999999999999999999999999999999999999987777778
Q ss_pred hHHHHHHHHHHHhCCCeEEEeccCccccccCCccccCCCChHHHHHHHHHHHHhhcccccccccccccccCceeccCCCC
Q 010213 321 STPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLD 400 (515)
Q Consensus 321 ~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~~~~~~~~~~~~~~~~~~~~~l~~~~l~r~d~~~~~~g~e~r~PflD 400 (515)
++++|++++.+++.|++|+|||+||||+|+||.+|+.+|+...|..++.++++.++..++.|.|+++|++|+|+|+||||
T Consensus 321 s~p~yll~r~a~~~gvkVvLsGeGaDElFgGY~~~~~ap~~~~~~~e~~~~~~~l~~~~l~r~Dr~~ma~glE~RvPFLD 400 (578)
T PLN02549 321 STPMFLMSRKIKSLGVKMVLSGEGSDEIFGGYLYFHKAPNKEEFHKETCRKIKALHQYDCLRANKSTSAWGLEARVPFLD 400 (578)
T ss_pred HHHHHHHHHHHHhcCCEEEEecCchHhhhcChHhhhhCCCHHHHHHHHHHHHHHHhhhhccccchhhhhcCceEECCcCC
Confidence 89999999999999999999999999999999999888876668888888888888889999999999999999999999
Q ss_pred HHHHHHHHcCCccccccCCCCCcchhHHHHHhhccCCCCCCChhhhhcccCCCCCCCchhhHHHHHHHHHHhcChHHHHh
Q 010213 401 KDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVTDKMVQN 480 (515)
Q Consensus 401 ~~lve~~~~lP~~~k~~~~~~~~~~K~lLR~a~~~~~~~~lP~~i~~R~K~~f~~~~~~~~~~~~~~~~~~~l~~~~l~~ 480 (515)
++||+++++||+++|+.++.++..+|||||+||++...++||++|+||+|.||+.|+++.|++.+++++++.++|+++++
T Consensus 401 ~~~v~~a~~ip~~~k~~~~~~~~~eK~iLR~a~~~~~~~~LP~~Il~R~K~~f~~~~g~~w~~~l~~~~~~~~~d~~~~~ 480 (578)
T PLN02549 401 KEFIDVAMSIDPEWKMIRPGEGRIEKWVLRKAFDDEEDPYLPKHILWRQKEQFSDGVGYSWIDGLKAHAEKHVSDEMFAN 480 (578)
T ss_pred HHHHHHHHhCCHHHHhcCCCCCCCchHHHHHHHhhcCcccCCHHHhCCCccCCCCCCcchHHHHHHHHHHHHcCHHHHHH
Confidence 99999999999999997622223589999999986222379999999999999999998999999999999999999999
Q ss_pred cCccCCCCCCChHHHHHHHHHHhhhCCCccc
Q 010213 481 AQYIFPHNTPLTKEAYYYRMIFERFFPQVIH 511 (515)
Q Consensus 481 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (515)
.....+.++|.|||.||||+||+++||+...
T Consensus 481 ~~~~~~~~~p~tke~~~yr~if~~~~p~~~~ 511 (578)
T PLN02549 481 ASFRYPHNTPTTKEAYYYRMIFEKHFPQDAA 511 (578)
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHHHCCCcch
Confidence 9999999999999999999999999998543
|
|
| >PRK09431 asnB asparagine synthetase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-109 Score=879.45 Aligned_cols=504 Identities=58% Similarity=1.022 Sum_probs=454.0
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEECCEEEEEeeeeecCCCCCCCceeeCCCcEEEEEeeEEcC
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYN 80 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nGei~n 80 (515)
||||+|+++.+.........+..|++.|+|||||++|++..++++|||+||+|+|++.+.||+.+.++++++++||||||
T Consensus 1 MCGI~g~~~~~~~~~~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~lgh~RLsIid~~~g~QP~~~~~~~~~lv~NGEIyN 80 (554)
T PRK09431 1 MCGIFGILDIKTDADELRKKALEMSRLMRHRGPDWSGIYASDNAILGHERLSIVDVNGGAQPLYNEDGTHVLAVNGEIYN 80 (554)
T ss_pred CceEEEEEcCCCcchhHHHHHHHHHHHhhCCCCCcCCEEEeCCeEEEEEEeeecCCCCCCCCCCcCCCCEEEEEEEEEec
Confidence 99999999765433222467889999999999999999999999999999999998889999999999999999999999
Q ss_pred hHHHHHHh-cCCCccCCChHHHHHHHHHHHHHhhhhccccceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEc
Q 010213 81 HEALRERL-TNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISS 159 (515)
Q Consensus 81 ~~~L~~~l-~~~~~~~~~D~e~i~~~~~~~G~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faS 159 (515)
+.+|+++| ..+.|++.||+|+|+++|++||.+++++|+|+|||++||.++++++++||++|+|||||+...++.++|||
T Consensus 81 ~~eLr~~L~~~~~f~t~sD~Evil~ly~~~G~~~~~~L~G~FAf~i~D~~~~~l~laRD~~GikPLyy~~~~~~~~~faS 160 (554)
T PRK09431 81 HQELRAELGDKYAFQTGSDCEVILALYQEKGPDFLDDLDGMFAFALYDSEKDAYLIARDPIGIIPLYYGYDEHGNLYFAS 160 (554)
T ss_pred HHHHHHHHhccCCcCCCCHHHHHHHHHHHHHHHHHHhCCCceEEEEEECCCCEEEEEeCCCCCcceEEEEeCCCeEEEec
Confidence 99999999 45889999999999999999999999999999999999999999999999999999999886448899999
Q ss_pred CcccccccCCcceEeCCCeEEEecCCceEEeeCCCCCcC-CCCCCCCcHHHHHHHHHHHHHHhhccccceEEeecCCcch
Q 010213 160 ELKGLNDDCEHFEAFPPGHLYSSKSGGLKRWYNPTWYSE-AIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDS 238 (515)
Q Consensus 160 e~~~l~~~~~~i~~l~pG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDS 238 (515)
|+|+|...+++|++|||||++.+..++..+||++.+... ..++.++.+++++++|.+||++|+.+|+|||++||||+||
T Consensus 161 E~kaL~~~~~~I~~lpPGh~l~~~~g~~~~y~~~~~~~~~~~~~~~~~~~~lr~~L~~aV~~rl~sdvpvGv~LSGGLDS 240 (554)
T PRK09431 161 EMKALVPVCKTIKEFPPGHYYWSKDGEFVRYYQRDWFDYDAVKDNVTDKNELRDALEAAVKKRLMSDVPYGVLLSGGLDS 240 (554)
T ss_pred chHHHHHhcCCEEEECCCeEEEECCCcEEEecCCCcccccccCCHHHHHHHHHHHHHHHHHHHhcCCCceEEEcCCCccH
Confidence 999999999999999999999887667889999876422 2233445678999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccc----ccccCCCceeeEEeecCCCChHHHHHHHHHHhCCCceEEEeChhHHHHHHHHHHHhhccCC
Q 010213 239 SLVASITARHLAGTK----AARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYD 314 (515)
Q Consensus 239 s~iaa~a~~~~~~~~----~~~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~~~~~~~e~~~ 314 (515)
|+|++++++...+.. ...+|..+++|||+++++++|..+|+++|+++|++||++.++.+++++.++++++++|+++
T Consensus 241 SlIaala~~~~~~~~~~~~~~~~~~~~l~tfsig~~~~~D~~~A~~vA~~lg~~h~~v~~t~~e~~~~l~~vi~~le~~d 320 (554)
T PRK09431 241 SLISAIAKKYAARRIEDDERSEAWWPQLHSFAVGLEGSPDLKAAREVADHLGTVHHEIHFTVQEGLDALRDVIYHLETYD 320 (554)
T ss_pred HHHHHHHHHhhcccccccccccccCCCceEEEEeCCCCChHHHHHHHHHHhCCccEEEEeCHHHHHHHHHHHHHHHhccC
Confidence 999999988753210 0112334799999999999999999999999999999999999999999999999999988
Q ss_pred CCcccchHHHHHHHHHHHhCCCeEEEeccCccccccCCccccCCCChHHHHHHHHHHHHhhcccccccccccccccCcee
Q 010213 315 VTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEA 394 (515)
Q Consensus 315 ~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~~~~~~~~~~~~~~~~~~~~~l~~~~l~r~d~~~~~~g~e~ 394 (515)
++.+++++++|++++.+++.|++|+|||+||||+||||.+|+..|+...+..+..+++..++..++.|.|+++|++|+|+
T Consensus 321 p~~~~~~~p~yll~~~~~~~gvkvvLsGeGaDElFgGY~~~~~~p~~~~~~~e~~~~~~~l~~~~l~r~Dr~~ma~glE~ 400 (554)
T PRK09431 321 VTTIRASTPMYLMARKIKAMGIKMVLSGEGADELFGGYLYFHKAPNAKEFHEETVRKLRALHMYDCLRANKAMMAWGVEA 400 (554)
T ss_pred CccchhHHHHHHHHHHHHHcCCEEEEecCchhhhhcCchhhhhCCChhhcCHHHHHHHHHHHHHhhhccchhhhhcCcee
Confidence 77788889999999998888999999999999999999999877766667777888888888889999999999999999
Q ss_pred ccCCCCHHHHHHHHcCCccccccCCCCCcchhHHHHHhhccCCCCCCChhhhhcccCCCCCCCchhhHHHHHHHHHHhcC
Q 010213 395 RVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVT 474 (515)
Q Consensus 395 r~PflD~~lve~~~~lP~~~k~~~~~~~~~~K~lLR~a~~~~~~~~lP~~i~~R~K~~f~~~~~~~~~~~~~~~~~~~l~ 474 (515)
|+||||++||+++++||+++|+.++. ..+|+|||+||++ +||++|+||+|.||+.|++..|++.++++++++++
T Consensus 401 RvPFLD~~lv~~a~~ip~~~K~~~~~--~~~K~iLR~a~~~----~LP~~I~~R~K~~f~~~~g~~w~~~l~~~~~~~~~ 474 (554)
T PRK09431 401 RVPFLDKEFLDVAMRINPEDKMCGNG--KMEKHILREAFEG----YLPESILWRQKEQFSDGVGYSWIDTLKEVAAEQVS 474 (554)
T ss_pred ecCcCCHHHHHHHHhCCHHHHhcCCC--CCCHHHHHHHHhh----hCCHHHhCCCCCCCCCCChhHHHHHHHHHHHHHhC
Confidence 99999999999999999999998521 2489999999999 99999999999999999998899989999999999
Q ss_pred hHHHHhcCccCCCCCCChHHHHHHHHHHhhhCCCcc
Q 010213 475 DKMVQNAQYIFPHNTPLTKEAYYYRMIFERFFPQVI 510 (515)
Q Consensus 475 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (515)
|+.+++.....+.++|.|||+||||+||+++||++.
T Consensus 475 ~~~~~~~~~~~~~~~~~~ke~~~y~~if~~~fp~~~ 510 (554)
T PRK09431 475 DQQLATARFRFPYNTPTTKEAYLYREIFEELFPLPS 510 (554)
T ss_pred cHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHCCchh
Confidence 999999998889999999999999999999999643
|
|
| >PTZ00077 asparagine synthetase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-109 Score=880.95 Aligned_cols=511 Identities=59% Similarity=1.048 Sum_probs=455.0
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEE-----CCEEEEEeeeeecCCCCCCCceeeCCCcEEEEEe
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH-----GDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVN 75 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~-----~~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~n 75 (515)
||||+|+++...........+.+|++.|+|||||++|++.. +.+++||+||+|+|...+.||+.+++++++++||
T Consensus 1 MCGI~gi~~~~~~~~~~~~~~~~m~~~l~HRGPD~~g~~~~~~~~~~~~~lgh~RLsIvd~~~g~QP~~~~d~~~~lv~N 80 (586)
T PTZ00077 1 MCGILAIFNSKGERHELRRKALELSKRLRHRGPDWSGIIVLENSPGTYNILAHERLAIVDLSDGKQPLLDDDETVALMQN 80 (586)
T ss_pred CceEEEEEecCCchhhHHHHHHHHHHHHhCCCCCcCCEEEeccCCCCcEEEEeccceecCCCCCCCCcCCCCCCEEEEEE
Confidence 99999999765443222356788999999999999999985 5789999999999988899999999999999999
Q ss_pred eEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHHH-hhhhccccceEEEEEECCCCEEEEEecCCCcceeEEEEecC
Q 010213 76 GEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYGE-NFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLD 152 (515)
Q Consensus 76 Gei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~G~-~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~ 152 (515)
|||||+.+|+++| .|+.|++.||+|+|+++|++||. +++++|+|+|||++||..+++++++||++|+|||||+...+
T Consensus 81 GEIYN~~eLr~~L~~~g~~f~t~sD~Evil~ly~~~G~~~~l~~L~G~FAf~i~D~~~~~l~~aRD~~GikPLyy~~~~~ 160 (586)
T PTZ00077 81 GEIYNHWEIRPELEKEGYKFSSNSDCEIIGHLYKEYGPKDFWNHLDGMFATVIYDMKTNTFFAARDHIGIIPLYIGYAKD 160 (586)
T ss_pred EEEcCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhCHHHHHHhcCCCEEEEEEECCCCEEEEEECCCCCcCeEEEEecC
Confidence 9999999999999 68999999999999999999999 99999999999999999999999999999999999987446
Q ss_pred cEEEEEcCcccccccCCcceEeCCCeEEEecC--CceEEeeCCCCCcC--CCCCCCCcHHHHHHHHHHHHHHhhccccce
Q 010213 153 GSIWISSELKGLNDDCEHFEAFPPGHLYSSKS--GGLKRWYNPTWYSE--AIPSTPYDPLVLRQAFENAVIKRLMTDVPF 228 (515)
Q Consensus 153 ~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~aV~~rl~~~~~v 228 (515)
+.++||||+|+|...+++|++|||||++.++. .+.++||+|.+... ..++.++..++++++|.+||++|+.+++|+
T Consensus 161 g~~~faSE~kaL~~~~~~I~~lpPGh~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~lr~~L~~AV~~rl~sdvpv 240 (586)
T PTZ00077 161 GSIWFSSELKALHDQCVEVKQFPPGHYYDQTKEKGEFVRYYNPNWHDFDHPIPTGEIDLEEIREALEAAVRKRLMGDVPF 240 (586)
T ss_pred CeEEEEecHHHHHHhcCCEEEeCCCcEEEecCCcceeEEecCCcccccccCCCCHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 78999999999999899999999999998864 35789999876532 123444567899999999999999999999
Q ss_pred EEeecCCcchHHHHHHHHHHhcccc--ccccCCCceeeEEeecCCCChHHHHHHHHHHhCCCceEEEeChhHHHHHHHHH
Q 010213 229 GVLLSGGLDSSLVASITARHLAGTK--AARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEV 306 (515)
Q Consensus 229 ~v~LSGGlDSs~iaa~a~~~~~~~~--~~~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~~~ 306 (515)
|++||||+|||+|++++++...+.. -.+.|..+++|||+++++++|..+|+++|+++|++|+++.++.++.++.++++
T Consensus 241 Gv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~l~tfsig~~~~~D~~~Ar~vA~~lg~~h~~i~~~~~e~~~~l~~~ 320 (586)
T PTZ00077 241 GLFLSGGLDSSIVAAIVAKLIKNGEIDLSKRGMPKLHSFCIGLEGSPDLKAARKVAEYLGTEHHEFTFTVEEGIDALPDV 320 (586)
T ss_pred EEEecCCchHHHHHHHHHHhhcccccccccccCCCceEEEcCCCCCchHHHHHHHHHHhCCcCcEEEECHHHHHHHHHHH
Confidence 9999999999999999998753210 00112247999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccccCCccccCCCChHHHHHHHHHHHHhhccccccccccc
Q 010213 307 IYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKIKALHQYDCLRANKS 386 (515)
Q Consensus 307 ~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~~~~~~~~~~~~~~~~~~~~~l~~~~l~r~d~~ 386 (515)
++++|+|+.+.++.++++|++++.+++.|++|+|||+||||+||||.+|+.+|+...|..++.++++.++.+++.|.|++
T Consensus 321 i~~le~~~~~~~~~~~p~yll~r~a~~~gvkVvLsGeGaDElFgGY~~~~~ap~~~~~~~e~~~~l~~l~~~~l~r~Dr~ 400 (586)
T PTZ00077 321 IYHTETYDVTTIRASTPMYLLSRRIKALGIKMVLSGEGSDELFGGYLYFHKAPNREEFHRELVRKLHDLHKYDCLRANKA 400 (586)
T ss_pred HHHhcCCCCCCcchHHHHHHHHHHHHhcCCeEEEecCchhhhccCcHhhhhCcchHHHHHHHHHHHHHHhccCCchhhHH
Confidence 99999998777888999999999999999999999999999999999998777666677777777888888999999999
Q ss_pred ccccCceeccCCCCHHHHHHHHcCCccccccCCCCCcchhHHHHHhhccCCCCCCChhhhhcccCCCCCCCchhhHHHHH
Q 010213 387 TSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLK 466 (515)
Q Consensus 387 ~~~~g~e~r~PflD~~lve~~~~lP~~~k~~~~~~~~~~K~lLR~a~~~~~~~~lP~~i~~R~K~~f~~~~~~~~~~~~~ 466 (515)
+|++|+|+|+||||++||+++++||+++|+.+..++..+|||||+||++..+++||++|+||+|.||+.|++..|++.++
T Consensus 401 ~ma~glE~RvPFLD~~~v~~a~~ip~~~K~~~~~~~~~~K~iLR~a~~~~~~~~LP~~I~~R~K~~F~~~~g~~w~~~l~ 480 (586)
T PTZ00077 401 TMAWGIEARVPFLDKDFLEYVMNIDPKYKMCNAFEGQMEKYILRKAFEGLEKPYLPDEILWRQKEQFSDGVGYSWIDGLK 480 (586)
T ss_pred HHhcCceeecCcCCHHHHHHHHhCCHHHhcCCCCCCCCCHHHHHHHHhccCcCcCCHHHhCCcccCCCCCCchhHHHHHH
Confidence 99999999999999999999999999999986211235899999999863234799999999999999999878999999
Q ss_pred HHHHHhcChHHHHhcCccCCCCCCChHHHHHHHHHHhhhCCCccc
Q 010213 467 AHAEQHVTDKMVQNAQYIFPHNTPLTKEAYYYRMIFERFFPQVIH 511 (515)
Q Consensus 467 ~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (515)
++++++++|+.+++.....+.++|.|||+||||+||+++||+...
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~p~tke~~~yr~if~~~~p~~~~ 525 (586)
T PTZ00077 481 EYAEKKISDQEFSQASFLFPYNTPRTKEAYLYRQIFSKHFPSDSA 525 (586)
T ss_pred HHHHHHhChHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHCCchhh
Confidence 999999999999999999999999999999999999999998654
|
|
| >TIGR03104 trio_amidotrans asparagine synthase family amidotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-91 Score=750.09 Aligned_cols=465 Identities=29% Similarity=0.490 Sum_probs=392.1
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEECCEEEEEeeeeecCC-CCCCCceeeCCCcEEEEEeeEEc
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDP-ASGDQPLYNEDKKIVVTVNGEIY 79 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~~~~l~h~rl~~~~~-~~~~qP~~~~~~~~~~~~nGei~ 79 (515)
||||+|++..++... ....+..|+++|+|||||++|+|..+++++||+||+|++. ..+.||+.+++++++++||||||
T Consensus 1 McGI~G~~~~~~~~~-~~~~~~~m~~~l~hRGPD~~g~~~~~~~~lgh~rl~i~~~~~~~~QP~~~~~~~~~~v~nGeiy 79 (589)
T TIGR03104 1 MCGICGEIRFDGQAP-DVAAVVRMLAVLAPRGPDAGGVHAQGPVALGHRRLKIIDLSEASQQPMVDAELGLALVFNGCIY 79 (589)
T ss_pred CcEEEEEEecCCCcc-hHHHHHHHHHhhcCCCCCcCCcEecCCEEEEEEeeEecCCCcCCCCCeECCCCCEEEEECCEec
Confidence 999999997654332 2467889999999999999999999999999999999987 46899999988999999999999
Q ss_pred ChHHHHHHh--cCCCccCCChHHHHHHHHHHHHHhhhhccccceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEE
Q 010213 80 NHEALRERL--TNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWI 157 (515)
Q Consensus 80 n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~G~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~f 157 (515)
|+.||+++| .|+.|.+.||+|+|+++|++||.+++++|+|+|||++||+.+++++++||++|+|||||+.. ++.++|
T Consensus 80 N~~eL~~~l~~~g~~f~~~sD~Evil~~y~~~G~~~~~~l~G~fa~~i~d~~~~~l~laRD~~G~kPLyy~~~-~~~~~f 158 (589)
T TIGR03104 80 NYRELRAELEALGYRFFSDGDTEVILKAYHAWGRDCVSRFNGMFAFAIWERDSGRLLLARDRLGIKPLYYAED-AGRLRF 158 (589)
T ss_pred CHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHHHHHHHhhcceEEEEEeCCCCEEEEEecCCCCCCeEEEEe-CCEEEE
Confidence 999999999 68899999999999999999999999999999999999999999999999999999999885 778999
Q ss_pred EcCccccccc----------------------------CCcceEeCCCeEEEec-CCc--eEEeeCCCCCcC---CCCCC
Q 010213 158 SSELKGLNDD----------------------------CEHFEAFPPGHLYSSK-SGG--LKRWYNPTWYSE---AIPST 203 (515)
Q Consensus 158 aSe~~~l~~~----------------------------~~~i~~l~pG~~~~~~-~~~--~~~~~~~~~~~~---~~~~~ 203 (515)
|||+++|+.. +++|++|||||++.++ ++. ..+||++..... ...+.
T Consensus 159 aSe~kaLl~~~~~~~~~d~~~l~~~l~~~~~~~~~~T~~~gI~~l~pG~~l~i~~~~~~~~~~yw~~~~~~~~~~~~~~~ 238 (589)
T TIGR03104 159 ASSLPALLAAGGVDTDIDPVALHHYLTFHAVVPAPHTILKGVRKLPPATWMTVEPDGSRTQRSYWSLDAGRPADDAARTE 238 (589)
T ss_pred EeCHHHHHhCCCCCCCcCHHHHHHHHHhcCCCCCCCchhhCceeeCCCcEEEEECCCCeEEEeeccCCCCcccccCCCCH
Confidence 9999988642 3689999999999885 333 568999764321 11233
Q ss_pred CCcHHHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCC-----ChHHHH
Q 010213 204 PYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS-----PDLKYA 278 (515)
Q Consensus 204 ~~~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~-----~d~~~A 278 (515)
++.+++++++|.+||++|+.+++|||++||||+|||+|++++++.. ..++.|||++++++ +|..+|
T Consensus 239 ~~~~~~l~~~L~~AV~~rl~sd~pvg~~LSGGlDSs~Iaa~~~~~~---------~~~l~tftigf~~~~~~~~dE~~~A 309 (589)
T TIGR03104 239 ADWQDAILEALRLAVKRRLVADVPVGVLLSGGLDSSLIVGLLAEAG---------VDGLRTFSIGFEDVGGEKGDEFEYS 309 (589)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCceeEEecCCccHHHHHHHHHHhc---------CCCceEEEEEecCCCCCCCChHHHH
Confidence 4456889999999999999999999999999999999999988754 24699999999753 799999
Q ss_pred HHHHHHhCCCceEEEeChhHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccccCCccccCC
Q 010213 279 KEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKA 358 (515)
Q Consensus 279 ~~va~~lg~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~~~~~ 358 (515)
+++|+++|++|+++.++++++.+.+++++++.+.|.. ..+.+++|++++.+++ +++|+|||+||||+||||.+|...
T Consensus 310 ~~vA~~~g~~h~~i~~~~~~~~~~l~~~v~~~~~P~~--~~~~~~~~~l~~~a~~-~~kV~LsGeGaDElFgGY~~~~~~ 386 (589)
T TIGR03104 310 DIIAERFHTRHHKIRIPNHRVLPALPEAVAAMSEPMV--SHDCVAFYLLSEEVSK-HVKVVQSGQGADEVFGGYHWYPPL 386 (589)
T ss_pred HHHHHHhCCcCeEEEcCHHHHHHHHHHHHHHhCCCCC--CchHHHHHHHHHHHhC-CCeEEeecCchHhcccCcHhHHHH
Confidence 9999999999999999999999999999998876642 2345778888887765 699999999999999999876421
Q ss_pred ------CCh-----------HHHH----H---------HH-------------HHHH-----Hh-hcccccccccccccc
Q 010213 359 ------PNK-----------EEFH----R---------ET-------------CHKI-----KA-LHQYDCLRANKSTSA 389 (515)
Q Consensus 359 ------~~~-----------~~~~----~---------~~-------------~~~~-----~~-l~~~~l~r~d~~~~~ 389 (515)
|.. ..+. . +. +.++ +. +....|.+.|+++|+
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~l~~~~L~~~Dr~sMa 466 (589)
T TIGR03104 387 AAGAGDPVAAYRRAFFDRDHAEYLEMVGPRFHAEDVSGEFVADHFARPGADTAVDQALRLDTTVMLVDDPVKRVDNMTMA 466 (589)
T ss_pred HhhccCchHHHHHHHhccCHHHHHHHhhhhhhccchhHHHHHHHhhcccCCCHHHHHHHHHHHHhCccccccchhhhhhh
Confidence 100 0000 0 00 0000 00 011135679999999
Q ss_pred cCceeccCCCCHHHHHHHHcCCccccccCCCCCcchhHHHHHhhccCCCCCCChhhhhcccCCCCCCCchhhHH-HHHHH
Q 010213 390 WGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWID-GLKAH 468 (515)
Q Consensus 390 ~g~e~r~PflD~~lve~~~~lP~~~k~~~~~~~~~~K~lLR~a~~~~~~~~lP~~i~~R~K~~f~~~~~~~~~~-~~~~~ 468 (515)
+|+|+|+||||++|||||++||+++|+.++ +|+|||+++++ +||++|++|+|+||+.|.+ .|++ .++++
T Consensus 467 ~svE~R~PFLD~~lve~a~~lP~~~k~~~~-----~K~iLR~a~~~----~lP~~i~~R~K~gf~~P~~-~w~~~~l~~~ 536 (589)
T TIGR03104 467 WGLEARVPFLDHELVELAARIPPELKLADG-----GKGVLKEAARG----VIPSEVIDRPKGYFPVPAL-KYLRGPFLEW 536 (589)
T ss_pred ccccccCCccCHHHHHHHHhCCHHHhcCCC-----cCHHHHHHHhh----hCCHHHhCCCCCCCCCcHH-HHhhhHHHHH
Confidence 999999999999999999999999999863 69999999999 9999999999999999987 8987 68999
Q ss_pred HHHhcChHHHHhcCccCCCCC
Q 010213 469 AEQHVTDKMVQNAQYIFPHNT 489 (515)
Q Consensus 469 ~~~~l~~~~l~~~g~~~~~~~ 489 (515)
++++++++.+...|++|+..+
T Consensus 537 ~~~~l~~~~~~~~~~~~~~~v 557 (589)
T TIGR03104 537 VRDALTSPAARERGLFQRAYV 557 (589)
T ss_pred HHHHhCccchhhcCccCHHHH
Confidence 999999888888889987643
|
Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases. |
| >TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-86 Score=721.60 Aligned_cols=467 Identities=31% Similarity=0.525 Sum_probs=387.0
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEECCEEEEEeeeeecCCCCCCCceeeCCCcEEEEEeeEEcC
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYN 80 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nGei~n 80 (515)
||||+|+++.++........+..|++.|.|||||++|+|..+++++||+|++|++...+.||+.+++++++++|||||||
T Consensus 1 McGI~G~~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~~~~~~lgh~rl~i~d~~~~~qP~~~~~~~~~lv~nGei~N 80 (628)
T TIGR03108 1 MCGITGIFDLTGQRPIDRDLLRRMNDAQAHRGPDGGGVHVEPGIGLGHRRLSIIDLSGGQQPLFNEDGSVVVVFNGEIYN 80 (628)
T ss_pred CCEEEEEEECCCCccccHHHHHHHHHHhcCCCCCccCeEeeCCEEEEEEeeeecCCCCCCCCcCcCCCCEEEEECCeECC
Confidence 99999999755432112356889999999999999999999999999999999998779999999999999999999999
Q ss_pred hHHHHHHh--cCCCccCCChHHHHHHHHHHHHHhhhhccccceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEE
Q 010213 81 HEALRERL--TNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWIS 158 (515)
Q Consensus 81 ~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~G~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~fa 158 (515)
+.||+++| .|+.|.+.||+|+|+++|++||.+++++|+|+|||++||..+++++++||++|+|||||+...++.++||
T Consensus 81 ~~eL~~~l~~~g~~~~~~sD~Evi~~~~~~~g~~~~~~l~G~fa~~~~d~~~~~l~~~rD~~G~~PLyy~~~~~~~~~fa 160 (628)
T TIGR03108 81 FQELVAELQALGHVFRTRSDTEVIVHAWEEWGEACVERFRGMFAFALWDRNQETLFLARDRLGIKPLYYALLADGWFIFG 160 (628)
T ss_pred HHHHHHHHHhcCCccCCCChHHHHHHHHHHHHHHHHHHcCCCEEEEEEECCCCEEEEEECCCCCcceEEEEeCCCEEEEE
Confidence 99999999 6889999999999999999999999999999999999999999999999999999999986446679999
Q ss_pred cCccccccc---------------------------CCcceEeCCCeEEEecCC----ceEEeeCCCCCcCCCCCCCCcH
Q 010213 159 SELKGLNDD---------------------------CEHFEAFPPGHLYSSKSG----GLKRWYNPTWYSEAIPSTPYDP 207 (515)
Q Consensus 159 Se~~~l~~~---------------------------~~~i~~l~pG~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 207 (515)
||+++|... +++|++|+|||++.++.+ +.++||++...+....+.++.+
T Consensus 161 Se~~al~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~~gI~~l~pG~~l~~~~~~~~~~~~~yw~~~~~~~~~~~~~e~~ 240 (628)
T TIGR03108 161 SELKALTAHPSLPRELDPLAVEDYFAYGYVPDPRTIFKGVKKLEPGHTLTLRRGAPPARPRCYWDVSFAPAAPLSEADAL 240 (628)
T ss_pred ecHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCCCchhcCcEEECCCeEEEEECCCcceeccccccCCCCCCCCCCHHHHH
Confidence 999988542 478999999999988633 2467998764322222345567
Q ss_pred HHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--CChHHHHHHHHHHh
Q 010213 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYL 285 (515)
Q Consensus 208 ~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--~~d~~~A~~va~~l 285 (515)
++++++|.+||+.|+.+++|||++||||+|||+|++++++.. ..+++|||+++++ .+|..+|+++|+++
T Consensus 241 e~l~~~l~~aV~~rl~~d~~vg~~LSGGlDSs~Iaa~~~~~~---------~~~i~t~s~~~~~~~~dE~~~A~~vA~~~ 311 (628)
T TIGR03108 241 AELIERLREAVRSRMVADVPLGAFLSGGVDSSAVVALMAGLS---------DTPVNTCSIAFDDPAFDESAYARQVAERY 311 (628)
T ss_pred HHHHHHHHHHHHHHHhcCCcceEeecCCccHHHHHHHHHHhc---------CCCCcEEEEecCCCCCChHHHHHHHHHHh
Confidence 899999999999999999999999999999999999988754 2479999999875 48999999999999
Q ss_pred CCCceEEEeChhHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccccCCccccCC-------
Q 010213 286 GTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKA------- 358 (515)
Q Consensus 286 g~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~~~~~------- 358 (515)
|++|+++.+++++ .+.++.+++..+.|.. ..+..+.+.+++.+++ +++|+|||+||||+|+||.+|...
T Consensus 312 g~~h~~~~~~~~~-~~~~~~~~~~~~~P~~--~~~~~~~~~~~~~a~~-~~kV~LsG~GgDElf~GY~~~~~~~~~~~~~ 387 (628)
T TIGR03108 312 GTNHRVETVDPDD-FSLVDRLAGLYDEPFA--DSSALPTYRVCELARK-RVTVALSGDGGDELFAGYRRYRWHMAEERVR 387 (628)
T ss_pred CCCCeEEecCHHH-HHHHHHHHHHhCCCCC--CchHHHHHHHHHHHHC-CCCEEEeccchhhcccCcHHHHHHHHHHHHh
Confidence 9999999998877 5677777776665532 2345677888887755 799999999999999999754310
Q ss_pred ---C----------------Ch--------H--H-----------H-H------HHHHHH-----------------H-H
Q 010213 359 ---P----------------NK--------E--E-----------F-H------RETCHK-----------------I-K 373 (515)
Q Consensus 359 ---~----------------~~--------~--~-----------~-~------~~~~~~-----------------~-~ 373 (515)
+ .. . . + . .+.... + .
T Consensus 388 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 467 (628)
T TIGR03108 388 GILPLGLRRPLFGTLGRLYPKADWAPRMLRAKTTFQALARDPLEGYFHSVSVLDNALRRQLFSPDFRRELQGYRAIEVLR 467 (628)
T ss_pred hhCCHHHHHHHHHHHHhhCcccccchhhhhhhhhHhhhhcchHHHHHHHhhhcChHHHHHHHHHHhhhhcccCCHHHHHH
Confidence 0 00 0 0 0 0 000000 0 0
Q ss_pred hh----c------------------ccccccccccccccCceeccCCCCHHHHHHHHcCCccccccCCCCCcchhHHHHH
Q 010213 374 AL----H------------------QYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRK 431 (515)
Q Consensus 374 ~l----~------------------~~~l~r~d~~~~~~g~e~r~PflD~~lve~~~~lP~~~k~~~~~~~~~~K~lLR~ 431 (515)
.. . ...+.+.|+++|++|+|+|+||||++|||||++||+++|+.++. +|+|||+
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~l~~~lL~~~Dr~sMa~svE~R~PFLD~~lve~a~slP~~~k~~~~~----~K~iLR~ 543 (628)
T TIGR03108 468 RHAARAPTDDALSLAQYLDLKTYLPGDILTKVDRASMAHGLEVRVPLLDHRLVEWAAGLPPDLKLRGGE----GKYLLKK 543 (628)
T ss_pred HHhccccCCCHHHHHHHHHHHHhCccccccccCccchhccccccCCCCCHHHHHHHHhCCHHHhcCCCC----chHHHHH
Confidence 00 0 00134579999999999999999999999999999999998875 8999999
Q ss_pred hhccCCCCCCChhhhhcccCCCCCCCchhhHH-HHHHHHHHhcChHHHHhcCccCCCCC
Q 010213 432 AFDDEERPYLPKHVLYRQKEQFSDGVGYSWID-GLKAHAEQHVTDKMVQNAQYIFPHNT 489 (515)
Q Consensus 432 a~~~~~~~~lP~~i~~R~K~~f~~~~~~~~~~-~~~~~~~~~l~~~~l~~~g~~~~~~~ 489 (515)
||++ +||++|++|+|+||+.|.. .|++ .+++++++++.++.+.+.|++|+..+
T Consensus 544 a~~~----~LP~~I~~R~K~gF~~p~~-~w~~~~l~~~~~~~l~~~~~~~~g~~d~~~v 597 (628)
T TIGR03108 544 AMRP----YLPDDVLYRPKMGFSVPLA-AWFRGPLRERVRTLVLGETLAETGLFDPAFI 597 (628)
T ss_pred HHHh----hCCHHHhCCCCCCCCCCHH-HHhccHHHHHHHHHhChhhhhhcCCcCHHHH
Confidence 9999 9999999999999999987 8986 58899999999999988999987643
|
The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins. |
| >TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-84 Score=684.26 Aligned_cols=429 Identities=45% Similarity=0.754 Sum_probs=367.9
Q ss_pred EEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceE-EECCEEEEEeeeeecCCCCCCCceeeCCCcEEEEEeeEEcChH
Q 010213 4 ILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLY-QHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYNHE 82 (515)
Q Consensus 4 I~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~-~~~~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nGei~n~~ 82 (515)
|+|++..++......+.+..|++.|+|||||++|+| ..+++++||+||+|+|.+.+.||+.+.+++++++|||||||+.
T Consensus 1 i~g~~~~~~~~~~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~~lgh~rl~i~d~~~~~qP~~~~~~~~~lv~nGeiyN~~ 80 (467)
T TIGR01536 1 IAGFFDLDDKAVEEDEAILRMSDTIAHRGPDASGIEYKDGNAILGHRRLAIIDLSGGAQPMSNEGKTYVIVFNGEIYNHE 80 (467)
T ss_pred CEEEEecCCcchhhHHHHHHHHHHhhCcCCCcCCcEEccCCEEEEEEEeEEeCCCCCCCeeECCCCCEEEEEeeEEcCHH
Confidence 688888776544334578999999999999999999 8889999999999999877899999999999999999999999
Q ss_pred HHHHHh--cCCCccCCChHHHHHHHHHHHHHhhhhccccceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcC
Q 010213 83 ALRERL--TNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSE 160 (515)
Q Consensus 83 ~L~~~l--~~~~~~~~~D~e~i~~~~~~~G~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe 160 (515)
+|+++| .|+.|.+.||+|+|+++|++||.+++++++|+|||++||+++++++++||++|+|||||+.. ++.++||||
T Consensus 81 eL~~~l~~~g~~~~~~~D~e~il~~y~~~g~~~~~~l~G~fa~~i~D~~~~~l~laRD~~G~kPLyy~~~-~~~~~faSe 159 (467)
T TIGR01536 81 ELREELEAKGYTFQTDSDTEVILHLYEEWGEECVDRLDGMFAFALWDSKKGELFLARDRFGIKPLYYAYD-GGQLYFASE 159 (467)
T ss_pred HHHHHHHhcCCccCCCCHHHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCEEEEEECCCCCcCeEEEEE-CCEEEEEec
Confidence 999999 68999999999999999999999999999999999999999999999999999999999985 788999999
Q ss_pred ccccccc----------------------------CCcceEeCCCeEEEecCCc---eEEeeCCCCCcCCCCCCCCcHHH
Q 010213 161 LKGLNDD----------------------------CEHFEAFPPGHLYSSKSGG---LKRWYNPTWYSEAIPSTPYDPLV 209 (515)
Q Consensus 161 ~~~l~~~----------------------------~~~i~~l~pG~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 209 (515)
+++|... +++|++|+||+++.++.++ .++||.+. .....+.++.+++
T Consensus 160 ~kaL~~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~~~I~~l~pG~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~e~ 237 (467)
T TIGR01536 160 IKALLAHPRNIKPFPDGAALAPGFGFVRVPPPSTFFRGVFELEPGHDLPLEDDGLNIERYYWERR--DEHTDSEEDLVDE 237 (467)
T ss_pred HHHHHhccccCcCCCCHHHHHHHhccCccCCCCcccCCcEEcCCCeEEEEeCCCceEEEEecCCC--CCCCCCHHHHHHH
Confidence 9987531 4789999999999886432 34566522 1122234456789
Q ss_pred HHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC---CChHHHHHHHHHHhC
Q 010213 210 LRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG---SPDLKYAKEVADYLG 286 (515)
Q Consensus 210 l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~---~~d~~~A~~va~~lg 286 (515)
++++|.+||++|+.++.|+|++||||+|||+|++++++...+ .++.+||+++++ .+|..+|+++|+++|
T Consensus 238 l~~~l~~aV~~r~~~~~~vg~~LSGGlDSs~iaa~a~~~~~~--------~~~~~~t~~~~~~~~~~E~~~A~~vA~~lg 309 (467)
T TIGR01536 238 LRSLLEDAVKRRLVADVPVGVLLSGGLDSSLVAAIARREAPR--------GPVHTFSIGFEGSPDFDESPYARKVADHLG 309 (467)
T ss_pred HHHHHHHHHHHHhccCCceEEEecCChhHHHHHHHHHHhcCC--------CCceEEEEecCCCCCCChHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999876421 368999998873 368889999999999
Q ss_pred CCceEEEeChhHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccccCCccccCCCChHHHHH
Q 010213 287 TVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHR 366 (515)
Q Consensus 287 ~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~~~~~~~~~~~~~ 366 (515)
++|+++.++++++.+.+++.++..+.|. ...+..+.+.+++.+++.|++|+|||+||||+|+||+++...+....+.+
T Consensus 310 ~~~~~i~~~~~~~~~~~~~~v~~~~~p~--~~~~~~~~~~l~~~a~~~G~~vlltG~GaDElf~GY~~~~~~~~~~~~~~ 387 (467)
T TIGR01536 310 TEHHEVLFSVEEGLDALPEVIYHLEDPT--TIRASIPLYLLSKLAREDGVKVVLSGEGADELFGGYLYFHEAPAAEALRE 387 (467)
T ss_pred CcCeEEECCHHHHHHHHHHHHHhhCCCC--CCchHHHHHHHHHHHHhcCCEEEEecCcchhcccCchhhhhccccHHHHH
Confidence 9999999999998889999988877543 34456788899999999999999999999999999998875543333322
Q ss_pred HHH-HHHHhhcccccccccccccccCceeccCCCCHHHHHHHHcCCccccccCCCCCcchhHHHHHhhccCCCCCCChhh
Q 010213 367 ETC-HKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHV 445 (515)
Q Consensus 367 ~~~-~~~~~l~~~~l~r~d~~~~~~g~e~r~PflD~~lve~~~~lP~~~k~~~~~~~~~~K~lLR~a~~~~~~~~lP~~i 445 (515)
+.. ..++.....++++.|+++|++|+|+|+||||++|||||++||.++|+.++. +|+|||++|++ +||++|
T Consensus 388 ~~~~~~~~~~l~~~l~~~dr~~ma~gvE~R~PflD~~lv~~a~~lp~~~k~~~~~----~K~iLR~a~~~----~lP~~i 459 (467)
T TIGR01536 388 ELQYLDLELYMPGLLRRKDRMSMAHSLEVRVPFLDHELVEYALSIPPEMKLRDGK----EKYLLREAFEG----YLPEEI 459 (467)
T ss_pred HHHHHHHHHhCcccchhHHHHHhhccccccCCcCCHHHHHHHHhCCHHHhcCCCC----cHHHHHHHHhh----hCCHHH
Confidence 222 234444455677789999999999999999999999999999999998765 89999999999 999999
Q ss_pred hhcccCCC
Q 010213 446 LYRQKEQF 453 (515)
Q Consensus 446 ~~R~K~~f 453 (515)
++|+|.||
T Consensus 460 ~~R~K~gf 467 (467)
T TIGR01536 460 LWRKKEGF 467 (467)
T ss_pred hcCCCCCC
Confidence 99999987
|
This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff. |
| >COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-84 Score=682.59 Aligned_cols=485 Identities=38% Similarity=0.626 Sum_probs=394.5
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEECCEEEEEeeeeecCCCCCCCceeeCCCcEEEEEeeEEcC
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYN 80 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nGei~n 80 (515)
||||+|+++.++... ....+.+|.+.|.|||||.+|+|...++.+||+||+|+|..++.||+.+.+++++++|||||||
T Consensus 1 MCGI~g~~~~~~~~~-~~~~~~~m~~~l~hRGPD~~g~~~~~~~~~gh~rL~i~d~~~g~QP~~~~~~~~~l~~NGEIYN 79 (542)
T COG0367 1 MCGIAGILNFKNLID-AKSIIEEMTKLLRHRGPDDSGVWISLNALLGHRRLSIVDLSGGRQPMIKEGGKYAIVYNGEIYN 79 (542)
T ss_pred CCceeeeeccccccc-chHHHHHHHHHhhccCCCccccEecCCceeeeeEEEEeccccCCCCcccCCCcEEEEECCEeee
Confidence 999999999763222 2567899999999999999999999999999999999998889999999788899999999999
Q ss_pred hHHHHHHh--cCCCccCCChHHHHHHHHHHHHHhhhhccccceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEE
Q 010213 81 HEALRERL--TNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWIS 158 (515)
Q Consensus 81 ~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~G~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~fa 158 (515)
+.||+++| .|+.|.|.||||+|+++|++||.+++++|+|+|||++||..+++|+++|||+|+|||||+.. ++.++||
T Consensus 80 ~~elr~~l~~~g~~f~t~sDtEvil~~y~~~g~~~~~~l~G~fAfai~d~~~~~l~laRD~~GikPLyy~~~-~~~l~fa 158 (542)
T COG0367 80 VEELRKELREAGYEFRTYSDTEVILTLYEEWGEDCVEHLNGMFAFAIYDETRQKLFLARDPFGVKPLYYTSK-NENLAFA 158 (542)
T ss_pred HHHHHHHHHhcCceeccccchHHHHHHHHHHHHHHHHHhccceEEEEEECCCCEEEEEecCCCccccEEEec-CCceEEE
Confidence 99999999 59999999999999999999999999999999999999999999999999999999999985 6679999
Q ss_pred cCccccccc-----CCcceEeCCCeEEEecCCc-eEEeeCCCCCcCCCCCCCCcHHHHHHHHHHHHHHhhccccceEEee
Q 010213 159 SELKGLNDD-----CEHFEAFPPGHLYSSKSGG-LKRWYNPTWYSEAIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLL 232 (515)
Q Consensus 159 Se~~~l~~~-----~~~i~~l~pG~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aV~~rl~~~~~v~v~L 232 (515)
||+|+|... +++|++|+|||++.++.++ +.+||.+.+.... .+.++..++++++|.++|++|+++++|+|++|
T Consensus 159 SE~Kal~~~~~~~~~~~i~~l~pg~~l~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~l~~~l~~sV~~r~~advpvg~~l 237 (542)
T COG0367 159 SEIKALLAHPVVRFLRDIKELPPGHLLEFTDGGLIRRYWRLSEKTSK-ESADELAEHLRSLLEDAVKRRLVADVPVGVFL 237 (542)
T ss_pred echhhhhhCCcccccCCeEEcCCCcEEEEcCCCceeeeecccccccc-cchHHHHHHHHHHHHHHHHHHhccCCcEEEEe
Confidence 999999999 9999999999999998666 8999998765433 34556688999999999999999999999999
Q ss_pred cCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCC--hHHHHHHHHHHhCCCceEEEeChhHHHHHHHHHHHhh
Q 010213 233 SGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSP--DLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHV 310 (515)
Q Consensus 233 SGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~--d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~~~~~~~ 310 (515)
|||+|||+|++++++.... ....+||+++++++ |.++|+++|+.+|++|+.+.++++++.+.+++++++.
T Consensus 238 SGGlDSS~Iaa~a~~~~~~--------~~~~~fsvg~~~~~~~D~~~a~~~A~~lg~~h~~~~~~~~e~~~~~~~vv~~~ 309 (542)
T COG0367 238 SGGLDSSLIAAIAAEELGK--------EGKTTFTVGFEDSDSPDAKYARAVAKFLGTPHHEIILTNEELLNALPEVVKAL 309 (542)
T ss_pred CCCccHHHHHHHHHHhccc--------cceeeeEeecCCCCCchHHHHHHHHHHhCCCcEEEeecHHHHHHHHHHHHhhc
Confidence 9999999999999988632 12235999999874 9999999999999999999999999999999999999
Q ss_pred ccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccccCC-ccccCCCChHHH-HHHHHHHHHhhccccccccccccc
Q 010213 311 ETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGY-LYFHKAPNKEEF-HRETCHKIKALHQYDCLRANKSTS 388 (515)
Q Consensus 311 e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy-~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~r~d~~~~ 388 (515)
+.|.. +...+++|++++.+++.|.+|+|||+||||+|||| ++....+..... .+++.+++......++.|.+++++
T Consensus 310 ~~p~~--~~~~~ply~~~~~a~~~g~kVvLSGeGADElFgGY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~ 387 (542)
T COG0367 310 DTPGG--MAASIPLYLLSRKARAEGEKVVLSGEGADELFGGYPPYSRFAPGPEELLNEALRRALALIDYNRLARDDRVAA 387 (542)
T ss_pred CCCCc--ccchhHHHHHHHhhhhcCcEEeecCccHHHHhcCCchhhhhccchHHHHHHHHHhhhhhhhhhhhhhhhhhhh
Confidence 98875 56788999999999999999999999999999999 454444444333 333444443333333577889999
Q ss_pred ccCceeccCCCCHHHHHHHHcCCccccccCCCCCcchhHHHHHhhccCCCCC--CChhhhhcccCCCCCCCchhhHHHHH
Q 010213 389 AWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPY--LPKHVLYRQKEQFSDGVGYSWIDGLK 466 (515)
Q Consensus 389 ~~g~e~r~PflD~~lve~~~~lP~~~k~~~~~~~~~~K~lLR~a~~~~~~~~--lP~~i~~R~K~~f~~~~~~~~~~~~~ 466 (515)
++++|.|.||+|.+++++++++|++.++..+ +....|.++|-++.+ . +|++|.++.|+.++.+.+..+
T Consensus 388 ~~~~E~r~p~ld~~~~~l~l~~~~~~~i~~~-~~m~~~le~Rvpf~~----~~~l~~~i~~~~K~~~~~gk~~lr----- 457 (542)
T COG0367 388 AFGVEARVPFLDRELVDLALKIPPEHKLNRD-RSMAKKLERRVPFSD----GVELPEEIPWREKIAFGYGKGILR----- 457 (542)
T ss_pred hcccccccCchHHHHHHHHhcCCcccccchh-hhhhhhhheeccccc----chhhHhhCChhhhhhcCCcchhhH-----
Confidence 9999999999999999999999999888764 111245555666665 5 777777777777666544222
Q ss_pred HHHHHhcChHHHHhc--CccCC---CCCCChHHHHHHHHHHhhhCCC
Q 010213 467 AHAEQHVTDKMVQNA--QYIFP---HNTPLTKEAYYYRMIFERFFPQ 508 (515)
Q Consensus 467 ~~~~~~l~~~~l~~~--g~~~~---~~~~~~~~~~~~~~~~~~~~~~ 508 (515)
...+..+.+..+... ++--+ ...+..++.|.+..++.+++|.
T Consensus 458 ~~~~~~~p~~~~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (542)
T COG0367 458 IAYEKILPDFILSRKKLGFPKPLWGRYYENSLLLWLYRLIEEEFSPE 504 (542)
T ss_pred hhhhccCcHHHhcccccCCCcccccccccchHHHHHHHHHhhhcccc
Confidence 222222222222111 11111 1123466777777777776653
|
|
| >KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=352.33 Aligned_cols=430 Identities=23% Similarity=0.293 Sum_probs=297.0
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEECC----EEEEEeeeeecCCCCCCCceeeCCCcEEEEEee
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGD----FYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNG 76 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~~----~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nG 76 (515)
||||+-.+..+..-. ....-..|...+..||||.++....+. +.++-.-|...| ....||+... .++++.|||
T Consensus 1 MCGI~~s~~~~~~l~-~~~i~~~l~~~~~~rg~d~~~~v~~~~~~y~~~f~~~vL~lrG-~~t~Qpvv~d-~~~vfl~NG 77 (520)
T KOG0573|consen 1 MCGIFLSVDKDLALN-SELISEALGLLIGNRGPDHSSKVCTDGKPYIVLFESSVLSLRG-YLTKQPVVED-DRYVFLFNG 77 (520)
T ss_pred CceEEEeecCCcccc-ccchhhHHHHHhhccCCCchhhhhhcccceeEEeecceEEEee-eeccCceecc-cceEEEecc
Confidence 999999988765422 234456777788999999877654432 333333355554 2346998754 448999999
Q ss_pred EEcChHHHHHHhcCCCccCCChHHHHHHHHHHHH-----HhhhhccccceEEEEEECCCCEEEEEecCCCcceeEEEEec
Q 010213 77 EIYNHEALRERLTNHKFRTGSDCDVIAHLYEEYG-----ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGL 151 (515)
Q Consensus 77 ei~n~~~L~~~l~~~~~~~~~D~e~i~~~~~~~G-----~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~ 151 (515)
||||.. ...+..|+.+|+..+...+ .+.++.++|.|++++||.+.++||+.||++|+|.|-|....
T Consensus 78 eIyn~~---------~s~~~~d~~~l~~~l~~~~e~~~Il~~i~~~qGp~~~iyY~~~~~~LyfgRD~~GRrSLly~~~~ 148 (520)
T KOG0573|consen 78 EIYNGE---------KSDTLFDTDILAEELSNLKESGDILDIIKSLQGPWAFIYYDVRSDKLYFGRDDIGRRSLLYSLDP 148 (520)
T ss_pred eeccCC---------CccccchHHHHHHHHhcCCccccHHHHHHhccCCceEEEEEccCcEEEEecccccceeeeEEecc
Confidence 999954 2345669999988887654 56788899999999999999999999999999999999864
Q ss_pred CcEEEEEcCcccccccCCcceEeCCCeEEEecCCceEEeeCCCCCc---CCCCCC-------------CCcHHHHHHHHH
Q 010213 152 DGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLKRWYNPTWYS---EAIPST-------------PYDPLVLRQAFE 215 (515)
Q Consensus 152 ~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------~~~~~~l~~~l~ 215 (515)
.+..++.|.... ..+.|++|||+-.....+.-...|.+..... .+.+.. .+.+..+.+.+.
T Consensus 149 ~~f~~~~st~g~---~~~~i~e~~~~F~~~~~d~~~w~y~s~~le~~~~~s~~p~~~i~~~~l~~~~~~~~v~~l~~~l~ 225 (520)
T KOG0573|consen 149 FNFSLVLSTVGT---SGKLIYEVPPVFRNKLTDRVPWPYLSTKLENSLGPSLPPLCDISEIFLNQSHRSEVVSGLHTGLR 225 (520)
T ss_pred CceeEEeecccc---CCccccccCchhhhccCCccccccccceecccCCCcCCCccchHHHHhhhHHHHHHHhhhHHHHH
Confidence 443333332111 1234668899833222211111111100000 011111 112234555666
Q ss_pred HHHHHhhc---------------cccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC---C-----C
Q 010213 216 NAVIKRLM---------------TDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE---G-----S 272 (515)
Q Consensus 216 ~aV~~rl~---------------~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~---~-----~ 272 (515)
++++.|.. ...+|+|++|||+||++||.++....+.. .+|..+++.|. + .
T Consensus 226 ds~k~rvl~i~~rl~~~i~~~c~~~s~VcVlfSGGvDs~vvA~l~h~~vp~n-------e~IdLINVaF~n~e~~~~~~~ 298 (520)
T KOG0573|consen 226 DSLKDRVLVIPPRLCANILLRCIHESNVCVLFSGGVDSTVVAVLAHYVVPEN-------EPIDLINVAFGNPEGSKEQNV 298 (520)
T ss_pred HHHhhhhhccChhHhhhccccccccCcEEEEecCCchHHHHHHHHHhhcCCC-------CceeEEEeeccCCCcccccCC
Confidence 77766532 13689999999999999999999987654 57888887773 2 2
Q ss_pred ChHHHHHHHHHHhCC-------CceEEEeChhHHHHHHHHHHHhhccCCCCc--ccchHHHHHHHH---------HHHhC
Q 010213 273 PDLKYAKEVADYLGT-------VHHEFHFTVQDGIDAIEEVIYHVETYDVTT--IRASTPMFLMSR---------KIKSL 334 (515)
Q Consensus 273 ~d~~~A~~va~~lg~-------~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~--~~~~~~~~~l~~---------~a~~~ 334 (515)
+|++.+++-++.|.. ++.+++++-+++...-+. +.++-.|.... .+.+..+|++++ ...+.
T Consensus 299 PDRktgr~g~~eL~s~~P~R~~nlV~vnV~~~El~~~k~~-I~~LiyP~dtvmD~SIgcafwFAsrg~G~~~~~~~sy~s 377 (520)
T KOG0573|consen 299 PDRKTGRRGLEELQSLYPKRSWNLVEVNVTYEELQKAKEH-IKHLIYPKDTVMDLSIGCAFWFASRGRGVDSENQQSYRS 377 (520)
T ss_pred ccHHHHHHHHHHHHHhCCcceEEEEeccCCHHHHHHHHHH-HHHhhCcCccccccccceEEEEeeccccccccCcccccc
Confidence 799988888877753 345566666665544333 33332222221 223344556554 12234
Q ss_pred CCeEEEeccCccccccCCccccCC---CChHHHHHHHHHHHHhhcccccccccccccccCceeccCCCCHHHHHHHHcCC
Q 010213 335 GVKMVISGEGSDEIFGGYLYFHKA---PNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAID 411 (515)
Q Consensus 335 g~~vlltG~GgDelf~Gy~~~~~~---~~~~~~~~~~~~~~~~l~~~~l~r~d~~~~~~g~e~r~PflD~~lve~~~~lP 411 (515)
.++|+++|.||||+||||.+|+.. +..+.+.+|+.+++.++.++|+.|+||+...+|+|+|+||||..||+|..++|
T Consensus 378 ~a~V~l~GsGADEllgGY~rhr~rf~~~~~e~l~eEl~~dl~rIs~RNLgRDDRViad~Gke~R~PFLde~vV~~~~~l~ 457 (520)
T KOG0573|consen 378 YARVALLGSGADELLGGYHRHRTRFEKEDLEGLREELERDLFRISHRNLGRDDRVIADSGKEVRSPFLDENVVKLSNALP 457 (520)
T ss_pred ccEEEEecCChHHhhccHHHHHhhhccCCcHHHHHHHHHHHhhhhhcccCccchhhhccCceEeccchHHHHHHHHHhcc
Confidence 579999999999999999988732 33346889999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCcchhHHHHHhhccCCCCCCChhhhhcccCCCCCCCc
Q 010213 412 PEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVG 458 (515)
Q Consensus 412 ~~~k~~~~~~~~~~K~lLR~a~~~~~~~~lP~~i~~R~K~~f~~~~~ 458 (515)
...|...+..+ .+|.+||++.+.+ -||.. ..-||++++.|+.
T Consensus 458 ~~~k~~l~l~G-G~KlllRe~~~~l---Gl~~~-s~~pKrAmQFGSr 499 (520)
T KOG0573|consen 458 VSVKMMLGLRG-GEKLLLREAGRRL---GLPSA-STEPKRAMQFGSR 499 (520)
T ss_pred hhHHhhhcccc-hhhHHHHHHHHHh---CCCcc-cccchHHHHhhhh
Confidence 99998776533 5899999999984 36654 4567888777754
|
|
| >cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=326.59 Aligned_cols=227 Identities=42% Similarity=0.725 Sum_probs=183.8
Q ss_pred HHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC--CCChHHHHHHHHHHhCCC
Q 010213 211 RQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVADYLGTV 288 (515)
Q Consensus 211 ~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~--~~~d~~~A~~va~~lg~~ 288 (515)
+++|.+||+.|+.+++|||++||||+|||+|++++++... .++.+||+.+. ..+|..+|+++|+++|++
T Consensus 1 r~~l~~av~~~~~~~~~v~~~LSGGlDSs~va~~~~~~~~---------~~~~~~~~~~~~~~~~e~~~a~~~a~~l~~~ 71 (269)
T cd01991 1 RELLEDAVRRRLRSDVPVGVLLSGGLDSSLVAALAARLLP---------EPVKTFSIGFGFEGSDEREYARRVAEHLGTE 71 (269)
T ss_pred ChHHHHHHHHHhccCCceEEeecccHHHHHHHHHHHHhhC---------CCCceEEEeeCCCCCChHHHHHHHHHHhCCc
Confidence 3689999999999999999999999999999999988752 34778888765 356899999999999999
Q ss_pred ceEEEeChhHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccccCCccccCCCCh-------
Q 010213 289 HHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNK------- 361 (515)
Q Consensus 289 ~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~~~~~~~~------- 361 (515)
|+.+.++.+++.+.++..++..+.|. ...+..+.+.+++.+++.|++|+|||+||||+|+||+++......
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~l~~~a~~~~~~v~l~G~g~Delf~Gy~~~~~~~~~~~~~~~~ 149 (269)
T cd01991 72 HHEVEFTPADLLAALPDVIWELDEPF--ADSSAIPLYLLSRLARKHGIKVVLSGEGADELFGGYPRYRRAPLARRRRRRL 149 (269)
T ss_pred ceEEEcCHHHHHHHHHHHHHHhCCCC--CCcHHHHHHHHHHHHHHhCCEEEEecCCccccccChHHHHHHHHHhhccccC
Confidence 99999998888888877777665543 334567788899999999999999999999999999876432100
Q ss_pred -------------HHHHHHHHHHHHhhcc--------------------cccccccccccccCceeccCCCCHHHHHHHH
Q 010213 362 -------------EEFHRETCHKIKALHQ--------------------YDCLRANKSTSAWGLEARVPFLDKDFINVAM 408 (515)
Q Consensus 362 -------------~~~~~~~~~~~~~l~~--------------------~~l~r~d~~~~~~g~e~r~PflD~~lve~~~ 408 (515)
..+...+...+..+.. ..+.+.|+++|++|+|+|+||||.+|||||+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dr~~m~~gvE~R~PflD~~lve~~~ 229 (269)
T cd01991 150 LGLAALARALAGAEGLREELARDLARLHLLNGAADAAARARDLLTYLLGDLLLRDDRASMAHGLEVRVPFLDHRLVEFAL 229 (269)
T ss_pred cchhhHHHHhhhhhhhHHHHHHHHHhCcccccCCHHHHHHHHHHHhcccchHHHhhHHHHHhcccccCCCCCHHHHHHHH
Confidence 0111111121222211 1145689999999999999999999999999
Q ss_pred cCCccccccCCCCCcchhHHHHHhhccCCCCCCChhhhhcccCCCCCC
Q 010213 409 AIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDG 456 (515)
Q Consensus 409 ~lP~~~k~~~~~~~~~~K~lLR~a~~~~~~~~lP~~i~~R~K~~f~~~ 456 (515)
+||.++|+.++. +|+|||+++++ +||++|++|+|+||+.|
T Consensus 230 ~lP~~~k~~~~~----~K~iLR~a~~~----~lP~~i~~r~K~g~~~p 269 (269)
T cd01991 230 SLPPELKIRGGR----EKYLLREAAAG----LLPDEILWRPKRGFQVP 269 (269)
T ss_pred cCCHHHhcCCCC----chHHHHHHHHh----hCCHHHHcCCCCCCCCC
Confidence 999999998765 89999999999 99999999999999864
|
This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase . |
| >cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=308.70 Aligned_cols=189 Identities=42% Similarity=0.781 Sum_probs=170.2
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEECCEEEEEeeeeecCCCCCCCceeeCCCcEEEEEeeEEcCh
Q 010213 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYNH 81 (515)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nGei~n~ 81 (515)
|||+|+++.+.... ....+..|+..|+|||||+.|++..+++++||+|+++.+...+.||+..+++++++++||+|||+
T Consensus 1 cGI~g~~~~~~~~~-~~~~~~~~~~~l~hRGpd~~~~~~~~~~~lgh~rl~~~~~~~~~qP~~~~~~~~~~~~nG~i~N~ 79 (220)
T cd00712 1 CGIAGIIGLDGASV-DRATLERMLDALAHRGPDGSGIWIDEGVALGHRRLSIIDLSGGAQPMVSEDGRLVLVFNGEIYNY 79 (220)
T ss_pred CeEEEEEeCCCCcc-hHHHHHHHHHHHhccCCCCCCEEEECCEEEEEEeeeecCcccCCCCeEeCCCCEEEEEEEEEeCH
Confidence 99999997654222 35678899999999999999999999999999999999876789999988889999999999999
Q ss_pred HHHHHHh--cCCCccCCChHHHHHHHHHHHHHhhhhccccceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEc
Q 010213 82 EALRERL--TNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISS 159 (515)
Q Consensus 82 ~~L~~~l--~~~~~~~~~D~e~i~~~~~~~G~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faS 159 (515)
.+|+++| .++.+.+.||+|+|+++|++||.+++++++|+|++++||+++++++++||++|.+||||+.. ++.++|||
T Consensus 80 ~~L~~~l~~~~~~~~~~sD~e~l~~~~~~~g~~~~~~l~G~fa~vi~d~~~~~l~~~rD~~G~~pLy~~~~-~~~~~~aS 158 (220)
T cd00712 80 RELRAELEALGHRFRTHSDTEVILHLYEEWGEDCLERLNGMFAFALWDKRKRRLFLARDRFGIKPLYYGRD-GGGLAFAS 158 (220)
T ss_pred HHHHHHHHhcCCcCCCCChHHHHHHHHHHHhHHHHHHhhheEEEEEEECCCCEEEEEECCCCCEeeEEEEE-CCEEEEEc
Confidence 9999999 67788999999999999999999999999999999999999999999999999999999986 67899999
Q ss_pred Cccccccc---------------------------CCcceEeCCCeEEEecCCc--eEEeeC
Q 010213 160 ELKGLNDD---------------------------CEHFEAFPPGHLYSSKSGG--LKRWYN 192 (515)
Q Consensus 160 e~~~l~~~---------------------------~~~i~~l~pG~~~~~~~~~--~~~~~~ 192 (515)
|+++|... +++|++|||||++.++.++ .++||+
T Consensus 159 e~~~l~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~~~V~~l~pG~~l~~~~~~~~~~~yw~ 220 (220)
T cd00712 159 ELKALLALPGVPRELDEAALAEYLAFQYVPAPRTIFKGIRKLPPGHYLTVDPGGVEIRRYWD 220 (220)
T ss_pred chHHHHhcCCCCCCcCHHHHHHHHhcCCCCCCCchhcCceEECCceEEEEECCCeEEeeeCC
Confidence 99998652 4689999999999887553 577884
|
Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia. |
| >PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=310.95 Aligned_cols=225 Identities=35% Similarity=0.646 Sum_probs=172.2
Q ss_pred HHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCC--hHHHHHHHHHHhC
Q 010213 209 VLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSP--DLKYAKEVADYLG 286 (515)
Q Consensus 209 ~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~--d~~~A~~va~~lg 286 (515)
+|+++|.+||++|+.++.+|++.||||+||++|++++++.. +.++.+||+++++.+ |..+|+++|+++|
T Consensus 1 ~~r~~l~~av~~rl~~~~~i~~~LSGGlDSs~i~~~~~~~~---------~~~~~~~t~~~~~~~~~e~~~a~~va~~~~ 71 (255)
T PF00733_consen 1 ELRELLEEAVARRLRSDKPIGILLSGGLDSSAIAALAARQG---------GPPIKTFTIGFEDDDYDEREYARKVARHLG 71 (255)
T ss_dssp HHHHHHHHHHHHHCGCTSEEEEE--SSHHHHHHHHHHHHTC---------CSEEEEEEEECSSCC--HHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCChhHHHHHHHHHHhh---------CCceeEEEEEcCCCcchhHHHHHHHhcccc
Confidence 68999999999999999999999999999999999999833 368999999998876 9999999999999
Q ss_pred CCceEEEeChhHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccccCCccccCCC----ChH
Q 010213 287 TVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAP----NKE 362 (515)
Q Consensus 287 ~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~~~~~~----~~~ 362 (515)
++|+.+.++.+++.+.+++.++..+.|.........+.+.+++.+++.|++++|||+||||+|+||+.+.... ...
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~ltG~GgDelf~G~~~~~~~~~~~~~~~ 151 (255)
T PF00733_consen 72 LEHHEIELDPEDLLDNLEDIIWRLDGPSPLDDPNSLPLYLLARLARENGIRVLLTGQGGDELFGGYPRYRPAYLRPLLLG 151 (255)
T ss_dssp -EEEEEEE-HHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHHCHTTBSEEE--TTHHHHHTTTT-TTGGGCGHCCHH
T ss_pred cccceeeechhhHHHhHHHHHHHHhCCcccccccccHHHHHHHhhcccceeEEEeccccccccccchHhHHHHhhhhhhh
Confidence 9999999999998888888888777665322334566677888888899999999999999999997654321 111
Q ss_pred HHHHHHHHHHHh------------------------hcccccccccccccccCceeccCCCCHHHHHHHHcCCccccccC
Q 010213 363 EFHRETCHKIKA------------------------LHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMIN 418 (515)
Q Consensus 363 ~~~~~~~~~~~~------------------------l~~~~l~r~d~~~~~~g~e~r~PflD~~lve~~~~lP~~~k~~~ 418 (515)
.....+...+.. +....+.+.+++++.+|+++|+||||.+||+||++||.++++.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~PflD~~lv~~~~~lP~~~~~~~ 231 (255)
T PF00733_consen 152 RLSRELRRFIRNLLRADLERFQQPYDRSEYFDFWKRLLARLLPRSDRASMAYGIEVRSPFLDRRLVEFCLSLPPEQRFDG 231 (255)
T ss_dssp HHHHHHHHHHHHCCCTHH----------------HHHHHHHSCCHCHHHHCTT-EEE-GGGSHHHHHHHHCB-GGGCCET
T ss_pred hhhhhhhHHHHHHhhhccccccccccccccccccccccchhhhhhhhhhhhcccccCceecCHHHHHHHHhCCHHHHcCC
Confidence 222222222211 11222446778899999999999999999999999999999988
Q ss_pred CCCCcchhHHHHHhhccCCCCCCChhhhhccc
Q 010213 419 PQEGRIEKWILRKAFDDEERPYLPKHVLYRQK 450 (515)
Q Consensus 419 ~~~~~~~K~lLR~a~~~~~~~~lP~~i~~R~K 450 (515)
+. +|++||++|++ +||++|++|+|
T Consensus 232 ~~----~K~llR~a~~~----~lP~~i~~r~K 255 (255)
T PF00733_consen 232 GI----YKYLLREAMKD----LLPPEILWRKK 255 (255)
T ss_dssp TE----CTHHHHHHHTC----CS-HHHHTS-S
T ss_pred CC----CcHHHHHHHHh----hCCHHHhcCCC
Confidence 75 79999999999 99999999998
|
Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F. |
| >cd03766 Gn_AT_II_novel Gn_AT_II_novel | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=275.02 Aligned_cols=168 Identities=26% Similarity=0.387 Sum_probs=141.8
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEE----CCEEEEEeeeeecCCCCCCCceeeCCCcEEEEEee
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH----GDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNG 76 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~----~~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nG 76 (515)
||||+|+++.+.........+..|++.|+|||||+++++.. ..+.++|+||++++...+.||+...+++++++|||
T Consensus 1 MCGI~~~~~~~~~~~~~~~~~~~m~~~l~hRGPD~~~~~~~~~~~~~~~l~~~rL~i~~~~~~~QP~~~~~~~~~lv~NG 80 (181)
T cd03766 1 MCGILCSVSPSGPHINSSLLSEELLPNLRNRGPDYLSTRQLSVTNWTLLFTSSVLSLRGDHVTRQPLVDQSTGNVLQWNG 80 (181)
T ss_pred CCcEEEEEeCCCCcccchhhHHHHHHHHHhcCCCccCCEEeeccccEEEEEeeEEEecCCCCCCCCCEeCCCCEEEEECC
Confidence 99999999754432111345789999999999999999986 35899999999999767899999888889999999
Q ss_pred EEcChHHHHHHhcCCCccCCChHHHHHHHHHHHH------HhhhhccccceEEEEEECCCCEEEEEecCCCcceeEEEEe
Q 010213 77 EIYNHEALRERLTNHKFRTGSDCDVIAHLYEEYG------ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWG 150 (515)
Q Consensus 77 ei~n~~~L~~~l~~~~~~~~~D~e~i~~~~~~~G------~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~ 150 (515)
||||+.+|++ +.||+|+|+++|++|| .+++++|+|+|||++||..+++++++||++|+|||||+..
T Consensus 81 eIyN~~~l~~--------s~sDtEvi~~l~~~~g~~~~~i~~~~~~L~G~fA~vi~d~~~~~l~~aRD~~G~rPL~y~~~ 152 (181)
T cd03766 81 ELYNIDGVED--------EENDTEVIFELLANCSSESQDILDVLSSIEGPFAFIYYDASENKLYFGRDCLGRRSLLYKLD 152 (181)
T ss_pred EEECcccccC--------CCCHHHHHHHHHHHHhhhHHHHHHHHHhcccceEEEEEeCCCCEEEEEECCCCCcCcEEEee
Confidence 9999999864 6899999999999998 4899999999999999999999999999999999999985
Q ss_pred c-CcEEEEEcCcccccccCCcceEeCCCe
Q 010213 151 L-DGSIWISSELKGLNDDCEHFEAFPPGH 178 (515)
Q Consensus 151 ~-~~~~~faSe~~~l~~~~~~i~~l~pG~ 178 (515)
. ++.++|||+..... .....+++|+.
T Consensus 153 ~~~~~l~~aS~~~~~~--~~~~~e~~~~g 179 (181)
T cd03766 153 PNGFELSISSVSGSSS--GSGFQEVLAGG 179 (181)
T ss_pred CCCCcEEEEEccCCCC--CCceEECCCCc
Confidence 3 67899999865332 12466677753
|
This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet |
| >PRK08525 amidophosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-35 Score=301.08 Aligned_cols=218 Identities=21% Similarity=0.374 Sum_probs=172.9
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEEC---------------------------CEEEEEeeeee
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG---------------------------DFYLAHQRLAI 53 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~---------------------------~~~l~h~rl~~ 53 (515)
||||+|+++... ....+..|+.+|+|||||++|++..+ .+++||+||+|
T Consensus 1 MCGI~G~~~~~~----~~~~~~~~L~~LqhRG~DsaGia~~~~~~~~~~k~~G~v~~~f~~~~~~~~~g~~~iGH~R~at 76 (445)
T PRK08525 1 MCAVVGVINSKN----AAKLAYYALFAMQHRGQEASGISVSNGKKIKTIKGRGLVTQVFNEDNLKTLKGEIAIGHNRYST 76 (445)
T ss_pred CceEEEEEcCcc----HHHHHHHHHHHhhCcCcccceEEEEeCCEEEEEEcCcchhhccchhhhhccCCcEEEeeccccc
Confidence 999999998642 23556789999999999999998732 47999999999
Q ss_pred cCCC--CCCCceee--CCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHH--------Hhhhhcccc
Q 010213 54 IDPA--SGDQPLYN--EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG--------ENFVDMLDG 119 (515)
Q Consensus 54 ~~~~--~~~qP~~~--~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~G--------~~~~~~l~G 119 (515)
.|.. .+.||+.+ .+++++++|||+|||+.+|+++| .|+.|.+.||+|+|+++|.+++ .+++++|+|
T Consensus 77 ~g~~~~~naqP~~~~~~~g~~~lvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvi~~l~~~~~~~~~~ea~~~~~~~L~G 156 (445)
T PRK08525 77 AGNDSILDAQPVFARYDLGEIAIVHNGNLVNKKEVRSRLIQDGAIFQTNMDTENLIHLIARSKKESLKDRIIEALKKIIG 156 (445)
T ss_pred CCCCCCCCCCCeEeecCCCCEEEEEEEEEECHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhcCC
Confidence 9953 58999987 56889999999999999999999 6899999999999999998875 578999999
Q ss_pred ceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcCccccccc-CCcceEeCCCeEEEec--CCceEE--eeCCC
Q 010213 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSK--SGGLKR--WYNPT 194 (515)
Q Consensus 120 ~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~--~~~~~~--~~~~~ 194 (515)
+||++++++ ++++++||++|+|||||+...++.++||||.++|... .+.++.++||+++.++ .++++. ++...
T Consensus 157 ~fa~vi~~~--~~l~~~RD~~GirPL~~g~~~~~~~~~ASE~~al~~~g~~~~~~~~pGe~v~i~~~~~~~~~~~~~~~~ 234 (445)
T PRK08525 157 AYCLVLLSR--SKMFAIRDPHGVRPLSLGRLKDGGYIVASETCAFDLIGAEFIRDVKPGEMLIFEQGNDEFESIQLFEPT 234 (445)
T ss_pred ceEEEEEeC--CEEEEEECCCCCCCeEEEEecCCEEEEEECHHHhhccCCcEEEEeCCCeEEEEEcCCCceEEEEecCCC
Confidence 999999996 7999999999999999987434679999999999654 4567889999998876 333322 33221
Q ss_pred -------CCcCCCCCC---CCcHHHHHHHHHHHHHHhhcc
Q 010213 195 -------WYSEAIPST---PYDPLVLRQAFENAVIKRLMT 224 (515)
Q Consensus 195 -------~~~~~~~~~---~~~~~~l~~~l~~aV~~rl~~ 224 (515)
|...+.|+. ...+-+++..+-+.+...+..
T Consensus 235 ~~~c~fe~iY~~rpds~~~g~~v~~~R~~~G~~La~~~~~ 274 (445)
T PRK08525 235 PRICAFEYIYFARPDSIVFGKNVYEVRKKMGEELAKKFPI 274 (445)
T ss_pred CccceeEeeeecCCCceECCEEHHHHHHHHHHHHHHHhcc
Confidence 111122322 234566777777777666543
|
|
| >PRK07631 amidophosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=294.23 Aligned_cols=233 Identities=24% Similarity=0.362 Sum_probs=179.3
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEE---------------------------CCEEEEEeeeee
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH---------------------------GDFYLAHQRLAI 53 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~---------------------------~~~~l~h~rl~~ 53 (515)
||||+|+++... ....+..++..|+|||||++|++.. +++++||+|++|
T Consensus 11 mCGI~Gi~~~~~----~~~~~~~gL~~LqHRG~dsaGia~~~~~~~~~~k~~Glv~~vf~~~~l~~l~G~~gIGH~RysT 86 (475)
T PRK07631 11 ECGVFGIWGHEE----AAQITYYGLHSLQHRGQEGAGIVVTDGGKLSAHKGLGLVTEVFQNGELDALKGKAAIGHVRYAT 86 (475)
T ss_pred CCcEEEEECCch----hHHHHHHHHHHhcCCCcccCeEEEEcCCEEEEEEcccccchhhchhhhhccCCCEEEEEeeccc
Confidence 999999998532 2456778899999999999998852 347899999999
Q ss_pred cCCC--CCCCcee--eCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHH--------Hhhhhcccc
Q 010213 54 IDPA--SGDQPLY--NEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG--------ENFVDMLDG 119 (515)
Q Consensus 54 ~~~~--~~~qP~~--~~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~G--------~~~~~~l~G 119 (515)
.|.. .+.||+. +.+++++++|||+|||+.+|+++| .|+.|.+.||+|+|+++|.+++ .+++++++|
T Consensus 87 ~G~~~~~n~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~Li~~~~~~~~~eai~~~~~~l~G 166 (475)
T PRK07631 87 AGGGGYENVQPLLFRSQTGSLALAHNGNLVNATQLKLQLENQGSIFQTTSDTEVLAHLIKRSGAPTLKEQIKNALSMLKG 166 (475)
T ss_pred cCCCCcCCcCCeEeEcCCCCEEEEEEEEEECHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCC
Confidence 9963 5899995 456889999999999999999999 6899999999999999999987 368999999
Q ss_pred ceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcCccccccc-CCcceEeCCCeEEEecCCceEEeeC-CCCC-
Q 010213 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGGLKRWYN-PTWY- 196 (515)
Q Consensus 120 ~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~~~~~~~-~~~~- 196 (515)
+||++++|. ++++++|||+|+|||||+.. ++.++||||.++|... .+.++.|+||+++.++.++++.+-. +...
T Consensus 167 ~yalvi~~~--~~l~aaRDp~GirPL~~G~~-~~~~~~ASE~~Al~~~g~~~ir~v~PGeiv~i~~~g~~~~~~~~~~~~ 243 (475)
T PRK07631 167 AYAFLLMTE--TELYVALDPNGLRPLSIGRL-GDAYVVASETCAFDVIGATYEREVEPGELLIINDEGMRSERFAPNQNR 243 (475)
T ss_pred CceeeEEeC--CEEEEEECCCCCCCEEEEEe-CCEEEEEeChHHHhhcCcceEEEcCCCeEEEEECCcEEEEecCCCCCc
Confidence 999999997 78999999999999999985 6789999999999665 3568899999998887655443321 1100
Q ss_pred --------cCCCCCC---CCcHHHHHHHHHHHHHHhhccccceEEeecCCcchHHHHH
Q 010213 197 --------SEAIPST---PYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVAS 243 (515)
Q Consensus 197 --------~~~~~~~---~~~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa 243 (515)
....|+. ...+.+.|..+-+.+.+....+. -.+.+=-||+..+|
T Consensus 244 ~~C~fE~iYfarpdS~~~g~~vy~~R~~~G~~La~~~~~~~---D~VvpVP~s~~~~A 298 (475)
T PRK07631 244 SICSMEYIYFARPDSNVDGINVHTARKNLGKRLALEAPVEA---DVVTGVPDSSISAA 298 (475)
T ss_pred ccceEEEEEeecCCcccCCeEHHHHHHHHHHHHHhhCCCCC---cEEEEechhHHHHH
Confidence 0122321 23466777777766665543221 13444455665444
|
|
| >PRK09123 amidophosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=294.06 Aligned_cols=233 Identities=25% Similarity=0.340 Sum_probs=182.8
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEEC----------------------------CEEEEEeeee
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG----------------------------DFYLAHQRLA 52 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~----------------------------~~~l~h~rl~ 52 (515)
||||+|+++... ....+..++.+|+|||||++|+...+ ++++||+|++
T Consensus 21 mCGI~Gi~~~~~----~~~~~~~gL~~LqHRG~dsaGia~~~~~~~~~~k~~Glv~~vf~~~~~l~~l~G~~~IGH~R~s 96 (479)
T PRK09123 21 ECGVFGILGHPD----AAALTALGLHALQHRGQEAAGIVSFDGERFHSERRMGLVGDHFTDADVIARLPGNRAIGHVRYS 96 (479)
T ss_pred cCeEEEEEcCcc----hHHHHHHHHHHhcCcCccCCEEEEEECCEEEEEecCcchhhhhhhhhhhhccCCCEEEEEEecc
Confidence 999999998542 24567788999999999999998622 3689999999
Q ss_pred ecCCC--CCCCceeeC--CCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHH--------Hhhhhccc
Q 010213 53 IIDPA--SGDQPLYNE--DKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG--------ENFVDMLD 118 (515)
Q Consensus 53 ~~~~~--~~~qP~~~~--~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~G--------~~~~~~l~ 118 (515)
|.|.. .+.||+... +++++++|||+|+|+.+|+++| .|+.|.+.||+|+|++++.+++ .+++++|+
T Consensus 97 T~G~~~~~n~QP~~~~~~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDSEvi~~Li~~~~~~~~~eai~~~~~~L~ 176 (479)
T PRK09123 97 TTGETILRNVQPLFAELEFGGLAIAHNGNLTNALTLRRELIRRGAIFQSTSDTEVILHLIARSRKASFLDRFIDALRQVE 176 (479)
T ss_pred cCCCCCcCCCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Confidence 99953 689999863 6889999999999999999999 6899999999999999998765 67899999
Q ss_pred cceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcCccccccc-CCcceEeCCCeEEEecCCc-eEEeeCCCCC
Q 010213 119 GMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGG-LKRWYNPTWY 196 (515)
Q Consensus 119 G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~-~~~~~~~~~~ 196 (515)
|+||+++++. ++++++||++|+|||||+.. ++.++||||.++|... .+.++.|+||+++.++... +..+......
T Consensus 177 G~ya~vil~~--~~l~a~RD~~GirPL~~g~~-~~~~~~ASE~~Al~~~g~~~~r~v~pGeiv~i~~~g~~~~~~~~~~~ 253 (479)
T PRK09123 177 GAYSLVALTN--TKLIGARDPLGIRPLVLGEL-DGSPILASETCALDIIGAEFVRDVEPGELVVIDEDGSIESIKPFPPQ 253 (479)
T ss_pred cceeEEEEEC--CEEEEEECCCCCCceEEEEE-CCEEEEEECchHHhccCCceEEEECCCeEEEEeCCCcEEEEEecCCC
Confidence 9999999997 79999999999999999985 6789999999999754 5678899999999887544 5443211111
Q ss_pred c----------CCCCC---CCCcHHHHHHHHHHHHHHhhccccceEEeecCCcchHHHHH
Q 010213 197 S----------EAIPS---TPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVAS 243 (515)
Q Consensus 197 ~----------~~~~~---~~~~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa 243 (515)
+ ...|+ ....+.++|..+.+.+.+....+. -.+.+-.||+..++
T Consensus 254 ~~~~C~FE~VYfarPdS~~~g~~vy~~R~~~g~~La~~~~~~~---D~Vv~VP~sg~~~A 310 (479)
T PRK09123 254 PARFCIFEYVYFARPDSVVGGRSVYEVRKNIGRELARESPVDA---DVVVPVPDSGVPAA 310 (479)
T ss_pred CCCCChhheEEecCCCceECCeEHHHHHHHHHHHHHHhCCCCC---eEEEEcCccHHHHH
Confidence 1 01222 133567888888888887654322 23445666666544
|
|
| >PRK07272 amidophosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=291.46 Aligned_cols=183 Identities=25% Similarity=0.404 Sum_probs=157.8
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEEC----------------------------CEEEEEeeee
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG----------------------------DFYLAHQRLA 52 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~----------------------------~~~l~h~rl~ 52 (515)
||||+|+++.+. ....+..++.+|+|||||++|++..+ ++++||+|++
T Consensus 11 mCGI~Gi~~~~~----~~~~~~~gL~~LqHRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~~~~~l~~l~G~~~IGH~Rys 86 (484)
T PRK07272 11 ECGVFGIWGHPD----AAQLTYFGLHSLQHRGQEGAGIVSNDNGKLKGHRDLGLLSEVFKDPADLDKLTGQAAIGHVRYA 86 (484)
T ss_pred cCeEEEEECCcc----HHHHHHHHHHHhcccCCccceEEEEeCCeeEEEecCCcccchhcchhhHhcCCCcEEEEEeecc
Confidence 999999997532 24567788999999999999998742 3799999999
Q ss_pred ecCCC--CCCCceee--CCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHH--------Hhhhhccc
Q 010213 53 IIDPA--SGDQPLYN--EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG--------ENFVDMLD 118 (515)
Q Consensus 53 ~~~~~--~~~qP~~~--~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~G--------~~~~~~l~ 118 (515)
|.|.. .+.||+.. .+++++++|||+|+|+.+|+++| .|+.|.+.||||+|++++.+++ .+++++++
T Consensus 87 T~G~~~~~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVI~~Li~~~~~~~~~eai~~~~~~l~ 166 (484)
T PRK07272 87 TAGSASIENIQPFLFHFHDMQFGLAHNGNLTNAVSLRKELEKQGAIFHSSSDTEILMHLIRRSHNPTFMGKLKEALNTVK 166 (484)
T ss_pred ccCCCCcCCCCCEEeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHcc
Confidence 99953 58999976 46889999999999999999999 6899999999999999998754 57889999
Q ss_pred cceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcCccccccc-CCcceEeCCCeEEEecCCceEE
Q 010213 119 GMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGGLKR 189 (515)
Q Consensus 119 G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~~~~ 189 (515)
|+||+++++. ++++++|||+|+|||||+...++.++||||.++|... .+.++.|+||+++.++.++++.
T Consensus 167 G~ya~~i~~~--~~l~a~RDp~GirPL~~G~~~~~~~~~ASE~~Al~~ig~~~ir~l~PGEiv~i~~~g~~~ 236 (484)
T PRK07272 167 GGFAYLLLTE--DKLIAALDPNGFRPLSIGKMKNGAYVVASETCAFDVVGAEWVRDVQPGEIVIIDDEGIQY 236 (484)
T ss_pred CceeEEEEEC--CEEEEEECCCCCCcEEEEEecCCEEEEEECHHHHhccCCceEEEcCCCeEEEEECCceEE
Confidence 9999999997 7899999999999999987535579999999999765 3668899999999887665443
|
|
| >cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=272.63 Aligned_cols=172 Identities=29% Similarity=0.453 Sum_probs=153.5
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEE---------------------------CCEEEEEeeeeec
Q 010213 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH---------------------------GDFYLAHQRLAII 54 (515)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~---------------------------~~~~l~h~rl~~~ 54 (515)
|||+|+++... ..+.+..|+.+|+|||||++|++.. +.+++||+|+++.
T Consensus 1 CGI~G~~~~~~----~~~~~~~~l~~l~hRG~d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~igH~R~at~ 76 (215)
T cd00714 1 CGIVGYIGKRE----AVDILLEGLKRLEYRGYDSAGIAVIGDGSLEVVKAVGKVANLEEKLAEKPLSGHVGIGHTRWATH 76 (215)
T ss_pred CEEEEEEcCcc----HHHHHHHHHHHHhccCcCcceEEEEeCCEEEEEEcCccHHHHHHHhhhccCCccEEEEEEEccCC
Confidence 99999998532 2356788999999999999999875 3578999999999
Q ss_pred CC--CCCCCceeeCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHHH----------hhhhccccc
Q 010213 55 DP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYGE----------NFVDMLDGM 120 (515)
Q Consensus 55 ~~--~~~~qP~~~~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~G~----------~~~~~l~G~ 120 (515)
+. ..+.||+...+++++++|||+|||+.+|+++| .|+.+.+.||+|+|+++|.+++. ++++.|+|+
T Consensus 77 g~~~~~n~qPf~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~sDsEvi~~l~~~~~~~~~~~~~ai~~~~~~l~G~ 156 (215)
T cd00714 77 GEPTDVNAHPHRSCDGEIAVVHNGIIENYAELKEELEAKGYKFESETDTEVIAHLIEYYYDGGLDLLEAVKKALKRLEGA 156 (215)
T ss_pred CCCCccCCCCCCcCCCCEEEEEeEEEcCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhccc
Confidence 96 35899999877889999999999999999999 58899999999999999999886 689999999
Q ss_pred eEEEEEECCCC-EEEEEecCCCcceeEEEEecCcEEEEEcCcccccccCCcceEeCCCeEEE
Q 010213 121 FSFVLLDTRDN-SFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYS 181 (515)
Q Consensus 121 fa~v~~d~~~~-~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~ 181 (515)
||+++||..++ +++++|| .|||||+.. ++.++||||.++|...+..|..|.+|+++.
T Consensus 157 fa~~~~d~~~~~~l~~~RD---~~PL~~~~~-~~~~~~aSE~~al~~~~~~~~~~~~~~~~~ 214 (215)
T cd00714 157 YALAVISKDEPDEIVAARN---GSPLVIGIG-DGENFVASDAPALLEHTRRVIYLEDGDIAV 214 (215)
T ss_pred eEEEEEEeCCCCEEEEEEC---CCCcEEEEc-CCeEEEEECHHHHHHhcCEEEEECCCCEEe
Confidence 99999998764 9999999 499999985 678999999999999999999999998864
|
This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin. |
| >PRK06388 amidophosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=294.97 Aligned_cols=227 Identities=22% Similarity=0.305 Sum_probs=178.1
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEEC--------------------------CEEEEEeeeeec
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG--------------------------DFYLAHQRLAII 54 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~--------------------------~~~l~h~rl~~~ 54 (515)
||||+|+++.+. ....+..++.+|+|||+|++|++..+ ++++||+||+|.
T Consensus 19 mCGI~G~~~~~~----~~~~~~~gL~~LqhRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~~~~~~l~G~~gIGH~RyaT~ 94 (474)
T PRK06388 19 DCAVVGFKGGIN----AYSPIITALRTLQHRGQESAGMAVFDGRKIHLKKGMGLVTDVFNPATDPIKGIVGVGHTRYSTA 94 (474)
T ss_pred CCeEEEEECCcc----hHHHHHHHHHHhhCcCcCcceEEEEcCCEEEEEecCcchHHHhhhhhhcCCCcEEEeeeeeeec
Confidence 999999998542 24568899999999999999998732 368999999999
Q ss_pred CCC--CCCCceee--CCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHH----HHH-----Hhhhhcccc
Q 010213 55 DPA--SGDQPLYN--EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYE----EYG-----ENFVDMLDG 119 (515)
Q Consensus 55 ~~~--~~~qP~~~--~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~----~~G-----~~~~~~l~G 119 (515)
|.. .+.||+.. ..++++++|||+|||+.+|+++| .|+.|.++||+|+|++++. ++| .+++++++|
T Consensus 95 G~~~~~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVi~~li~~~~~~~~~~eai~~~~~~l~G 174 (474)
T PRK06388 95 GSKGVENAGPFVINSSLGYIGISHNGEIVNADELREEMKKEGYIFQSDSDTEVMLAELSRNISKYGLKEGFERSMERLRG 174 (474)
T ss_pred CCCCccCCCCeEeecCCCCEEEEECceECCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHhccC
Confidence 953 58999973 46789999999999999999999 6899999999999999994 345 568999999
Q ss_pred ceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcCcccccccC-CcceEeCCCeEEEecCCceEEeeC-CCC--
Q 010213 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDC-EHFEAFPPGHLYSSKSGGLKRWYN-PTW-- 195 (515)
Q Consensus 120 ~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~-~~i~~l~pG~~~~~~~~~~~~~~~-~~~-- 195 (515)
+||+++++. ++++++||++|+|||||+.. ++.++||||.++|.... +.|+.|+||+++.++.++++.+.. +..
T Consensus 175 ~ya~vi~~~--~~l~a~RDp~GiRPL~~G~~-~~~~~~ASE~~Al~~~~~~~i~~l~PGeiv~i~~~g~~~~~~~~~~~~ 251 (474)
T PRK06388 175 AYACALMIN--DRLYAIRDPNGIRPLVLGKN-FDGYIIASESCAIDALSGTTIKNVEPGEVVEVFDNGYKTIFKLDGDKV 251 (474)
T ss_pred ceeEEEEEC--CEEEEEECCCCCCceEEEec-CCEEEEEEChHHHHhccCcEEEEeCCCEEEEEECCceEEEEecCCCcc
Confidence 999999976 89999999999999999985 66799999999999864 479999999998887655533332 110
Q ss_pred -------CcCCCCCC---CCcHHHHHHHHHHHHHHhhc--cccceEEeecC
Q 010213 196 -------YSEAIPST---PYDPLVLRQAFENAVIKRLM--TDVPFGVLLSG 234 (515)
Q Consensus 196 -------~~~~~~~~---~~~~~~l~~~l~~aV~~rl~--~~~~v~v~LSG 234 (515)
.....|+. ...+.+.|..+-+....... .|.-+.|.+||
T Consensus 252 ~~C~fE~iYfarpds~~~g~~vy~~R~~~G~~La~~~~~~~D~VvpVP~s~ 302 (474)
T PRK06388 252 AHCMFEYVYFSRPDSIIDGINVYQARVRMGMRLAKESPVEADVVVPVPDSG 302 (474)
T ss_pred ccceEEEEeecCCccccCCcHHHHHHHHHHHHHHhhccCCCcEEEeeCCCc
Confidence 01122322 23456677777666666543 23346677776
|
|
| >PRK07349 amidophosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=290.39 Aligned_cols=228 Identities=25% Similarity=0.310 Sum_probs=174.9
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEEC---------------------------CEEEEEeeeee
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG---------------------------DFYLAHQRLAI 53 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~---------------------------~~~l~h~rl~~ 53 (515)
||||+|+++.+.+ ....+..++..|+|||||++|+...+ ++++||+|++|
T Consensus 33 mCGI~Gi~~~~~~---~~~~~~~gL~~LqHRGqdsaGIa~~~~~~~~~~K~~Glv~~vf~~~~l~~l~G~i~IGHvRysT 109 (500)
T PRK07349 33 ACGVFGVYAPGEE---VAKLTYFGLYALQHRGQESAGIATFEGDKVHLHKDMGLVSQVFDEDILEELPGDLAVGHTRYST 109 (500)
T ss_pred CCeEEEEECCCcC---HHHHHHHHHHHhcccCcCcceEEEEeCCEEEEEecCcchhhhcchhhhhcCCCCEEEEEeeccc
Confidence 9999999985432 24566789999999999999997622 36999999999
Q ss_pred cCCC--CCCCceeeC--CCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHH-------HH---Hhhhhcc
Q 010213 54 IDPA--SGDQPLYNE--DKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEE-------YG---ENFVDML 117 (515)
Q Consensus 54 ~~~~--~~~qP~~~~--~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~-------~G---~~~~~~l 117 (515)
.|.. .++||+... .++++++|||+|||+.+|+++| .|+.|.++||||+|+++|.+ |+ .+++++|
T Consensus 110 ~G~~~~~naQP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~li~~~~~~~~~~~eai~~~~~~l 189 (500)
T PRK07349 110 TGSSRKANAQPAVLETRLGPLALAHNGNLVNTVELREELLARGCELTTTTDSEMIAFAIAQAVDAGKDWLEAAISAFQRC 189 (500)
T ss_pred CCCCCccCCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHh
Confidence 9963 589999864 4789999999999999999999 68999999999999999875 33 4688999
Q ss_pred ccceEEEEEECCCCEEEEEecCCCcceeEEEEec---CcEEEEEcCccccccc-CCcceEeCCCeEEEecCCceEEe-eC
Q 010213 118 DGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGL---DGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGGLKRW-YN 192 (515)
Q Consensus 118 ~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~---~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~~~~~-~~ 192 (515)
+|+||+++.++ ++++++||++|+|||||+... ++.++||||.++|... .+.|+.|+||+++.++.+++..+ +.
T Consensus 190 ~G~ya~vi~~~--~~l~aaRDp~GiRPL~~G~~~~~~~~~~~~ASE~~Al~~lg~~~ir~v~PGeiv~i~~~g~~~~~~~ 267 (500)
T PRK07349 190 QGAFSLVIGTP--EGLMGVRDPNGIRPLVIGTLGEGGPGRYVLASETCALDIIGAEYLRDVEPGELVWITEGGLSSFHWA 267 (500)
T ss_pred hhhEEEEEEeC--CEEEEEECCCCCCCeEEEecccCCCCeEEEEeccchhhhcCCceEEEeCCCeEEEEECCceEEEecc
Confidence 99999999987 789999999999999998741 3479999999999765 46789999999998876554332 21
Q ss_pred CCCC---------cCCCCCC---CCcHHHHHHHHHHHHHHhhc--cccceEEeec
Q 010213 193 PTWY---------SEAIPST---PYDPLVLRQAFENAVIKRLM--TDVPFGVLLS 233 (515)
Q Consensus 193 ~~~~---------~~~~~~~---~~~~~~l~~~l~~aV~~rl~--~~~~v~v~LS 233 (515)
+... ....|+. ...+.+.|..+-+.+.+... .|.-++|..|
T Consensus 268 ~~~~~~~C~fE~vYfarpdS~~~g~~V~~~R~~~G~~La~~~~~~~DvVv~VP~s 322 (500)
T PRK07349 268 QEPQRKLCIFEMIYFARPDSRMHGESLYSYRQRLGQQLAKESPVDADLVIGVPDS 322 (500)
T ss_pred cCCCcceeEEEeeeccCCCCccCCeEHHHHHHHHHHHHhhhcccCCcEEEEeccc
Confidence 1110 1122322 23466777777777665543 2333444444
|
|
| >PRK08341 amidophosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=286.48 Aligned_cols=179 Identities=27% Similarity=0.409 Sum_probs=154.4
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEE--------------------------CCEEEEEeeeeec
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH--------------------------GDFYLAHQRLAII 54 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~--------------------------~~~~l~h~rl~~~ 54 (515)
||||+|+++. . ....+..++.+|+|||+|++|++.. +++++||+|++|.
T Consensus 4 ~CGI~G~~~~-~----~~~~l~~gL~~LqhRG~dsaGIa~~~~~~~~~K~~Glv~~vf~~~~~~~l~g~~~IGH~R~sT~ 78 (442)
T PRK08341 4 KCGIFAAYSE-N----APKKAYYALIALQHRGQEGAGISVWRHRIRTVKGHGLVSEVFKGGSLSRLKSNLAIGHVRYSTS 78 (442)
T ss_pred ccEEEEEECC-C----cHHHHHHHHHHhhccCcccceEEEECCcEEEEecCCchhhhhcccccccCCCCEEEEEeecccc
Confidence 9999999983 2 2456788999999999999999662 3578999999999
Q ss_pred CCCCCCCceeeC--CCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHH----HHH------Hhhhhccccc
Q 010213 55 DPASGDQPLYNE--DKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYE----EYG------ENFVDMLDGM 120 (515)
Q Consensus 55 ~~~~~~qP~~~~--~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~----~~G------~~~~~~l~G~ 120 (515)
|...+.||+... +++++++|||+|||+.+|+++| .|+.|.++||||+|++++. ++| .+++++|+|+
T Consensus 79 G~~~~~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVI~~li~~~~~~~~~~~~ai~~~~~~l~G~ 158 (442)
T PRK08341 79 GSLSEVQPLEVECCGYKIAIAHNGTLTNFLPLRRKYESRGVKFRSSVDTELIGISFLWHYSETGDEFEAMREVFNEVKGA 158 (442)
T ss_pred CCCcCcCCEEeecCCCCEEEEEEEEEECHHHHHHHHHHcCCccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHhccCc
Confidence 977889999754 5789999999999999999999 6899999999999987653 333 2467999999
Q ss_pred eEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcCcccccccCCcceEeCCCeEEEecCCceE
Q 010213 121 FSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLK 188 (515)
Q Consensus 121 fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~~ 188 (515)
||+++.+. ++++++||++|+|||||+. .+ .++||||.++|......|+.|+||+++.++.++++
T Consensus 159 yal~i~~~--~~l~a~RD~~GirPL~~G~-~~-~~~~ASE~~Al~~~~~~v~~l~PGeiv~i~~~g~~ 222 (442)
T PRK08341 159 YSVAILFD--GKIIVARDPVGFRPLSYGE-GD-GHYFASEDSALRMFVNEIRDVFPGEVFVVSEGEVE 222 (442)
T ss_pred eEEEEEEC--CEEEEEEcCCCceEEEEEE-CC-EEEEEeCcHHHHhhCCeEEEeCCCEEEEEECCceE
Confidence 99999987 8999999999999999997 34 58999999999988888999999999988766544
|
|
| >PRK06781 amidophosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=285.71 Aligned_cols=234 Identities=24% Similarity=0.355 Sum_probs=181.9
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEEC---------------------------CEEEEEeeeee
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG---------------------------DFYLAHQRLAI 53 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~---------------------------~~~l~h~rl~~ 53 (515)
||||+|+++.+. ....+..++.+|+|||||++|++..+ ++++||+|++|
T Consensus 11 mCGI~Gi~~~~~----~~~~~~~gL~~LqhRG~dsaGia~~d~~~~~~~k~~GlV~~vf~~~~l~~l~g~~~IGHvRyaT 86 (471)
T PRK06781 11 ECGVFGIWGHEN----AAQVSYYGLHSLQHRGQEGAGIVVNNGEKIVGHKGLGLISEVFSRGELEGLNGKSAIGHVRYAT 86 (471)
T ss_pred cCeEEEEEcCcc----HHHHHHHHHHHhhCcCcCcceEEEEeCCEEEEEecCcchhhhcchhhHhcCCCCEEEEEeEccc
Confidence 999999998642 23566789999999999999998522 46889999999
Q ss_pred cCCC--CCCCceee--CCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHH--------Hhhhhcccc
Q 010213 54 IDPA--SGDQPLYN--EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG--------ENFVDMLDG 119 (515)
Q Consensus 54 ~~~~--~~~qP~~~--~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~G--------~~~~~~l~G 119 (515)
.|.. .+.||+.. .+++++++|||+|+|+.+|+++| .|+.|.+.||||+|++++.+++ .+++++++|
T Consensus 87 ~G~~~~~naqP~~~~~~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvI~~Li~~~~~~~~~eai~~~~~~l~G 166 (471)
T PRK06781 87 AGGSEVANVQPLLFRFSDHSMALAHNGNLINAKMLRRELEAEGSIFQTSSDTEVLLHLIKRSTKDSLIESVKEALNKVKG 166 (471)
T ss_pred CCCCCcCCCCCeEEecCCCCEEEEEEEEEcCHHHHHHHHHhCCCcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCC
Confidence 9963 58999963 46789999999999999999999 6889999999999999998875 567899999
Q ss_pred ceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcCccccccc-CCcceEeCCCeEEEecCCceEE--eeCCCCC
Q 010213 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGGLKR--WYNPTWY 196 (515)
Q Consensus 120 ~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~~~~--~~~~~~~ 196 (515)
+|++++++. ++++++||++|+|||||+.. ++.++||||.++|... .+.++.|+||+++.++.++++. +..+...
T Consensus 167 ~ya~vi~~~--~~l~aaRD~~GirPL~~g~~-~~~~~~ASE~~Al~~~g~~~ir~v~pGeiv~i~~~g~~~~~~~~~~~~ 243 (471)
T PRK06781 167 AFAYLLLTG--NEMIVALDPNGFRPLSIGKM-GDAYVVASETCAFDVVGATYIRDVEPGELLIINDEGIHVDRFTNEVDH 243 (471)
T ss_pred cEEEEEEEC--CEEEEEECCCCCCCeEEEEE-CCEEEEEECchHhhhcCCcEEEEeCCCEEEEEECCceEEEecCcCccc
Confidence 999999997 78999999999999999985 6689999999999754 3568889999999887655433 2221110
Q ss_pred --------cCCCCCC---CCcHHHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHH
Q 010213 197 --------SEAIPST---PYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASI 244 (515)
Q Consensus 197 --------~~~~~~~---~~~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~ 244 (515)
....|+. ...+.+.|..+-+.+.+....+. =.+.+--||+..+|.
T Consensus 244 ~~C~fE~vYfarpds~~~g~~vy~~R~~~G~~La~~~~~~~---D~vv~VP~s~~~~A~ 299 (471)
T PRK06781 244 AICSMEYIYFARPDSNIAGINVHAARKNMGKRLAAEAPIEA---DVVTGVPDSSISAAI 299 (471)
T ss_pred ccceEEEEEecCCCceeCCEEHHHHHHHHHHHHhhhCCCCC---cEEEEcChhHHHHHH
Confidence 0122322 23466777777777666554332 245667788877654
|
|
| >PRK07847 amidophosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=290.19 Aligned_cols=228 Identities=21% Similarity=0.323 Sum_probs=177.0
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEEC---------------------------CEEEEEeeeee
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG---------------------------DFYLAHQRLAI 53 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~---------------------------~~~l~h~rl~~ 53 (515)
||||+|+++...+ ....+..++..|+|||||+.|+...+ ++++||+|++|
T Consensus 23 mCGI~Gi~~~~~~---~~~~~~~gL~~LqHRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~d~~l~~l~G~i~IGHvR~sT 99 (510)
T PRK07847 23 ECGVFGVWAPGEE---VAKLTYYGLYALQHRGQEAAGIAVSDGSQILVFKDLGLVSQVFDEQTLASLQGHVAIGHCRYST 99 (510)
T ss_pred cCeEEEEECCCcC---HHHHHHHHHHHHhhhCcCcccEEEEeCCEEEEEecCccHHHhhchhhhhhcCCcEEEEeccCCc
Confidence 9999999985422 24566788999999999999987632 36899999999
Q ss_pred cCCC--CCCCceeeC---CCcEEEEEeeEEcChHHHHHHh--cCC-----CccCCChHHHHHHHHHHHHH---------h
Q 010213 54 IDPA--SGDQPLYNE---DKKIVVTVNGEIYNHEALRERL--TNH-----KFRTGSDCDVIAHLYEEYGE---------N 112 (515)
Q Consensus 54 ~~~~--~~~qP~~~~---~~~~~~~~nGei~n~~~L~~~l--~~~-----~~~~~~D~e~i~~~~~~~G~---------~ 112 (515)
.|.. .++||+... .++++++|||+|||+.+|+++| .|+ .|.+.||||+|++++.+++. +
T Consensus 100 ~G~~~~~naQP~~~~~~~~g~ialvHNG~I~N~~eLr~~L~~~G~~~~~~~f~s~sDSEVI~~Li~~~~~~~~~~eai~~ 179 (510)
T PRK07847 100 TGASTWENAQPTFRATAAGGGVALGHNGNLVNTAELAARARDRGLIRGRDPAGATTDTDLVTALLAHGAADSTLEQAALE 179 (510)
T ss_pred CCCCcccCCCCcCcccCCCCCEEEEEEEEEeCHHHHHHHHHhcCCccccCCCCCCCHHHHHHHHHHHhccCCCHHHHHHH
Confidence 9864 589999753 6889999999999999999999 465 48999999999999988763 5
Q ss_pred hhhccccceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcCccccccc-CCcceEeCCCeEEEecCCce--EE
Q 010213 113 FVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGGL--KR 189 (515)
Q Consensus 113 ~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~~--~~ 189 (515)
++++++|+|+++++|. ++++++||++|+|||||+.. ++.++||||.++|... .+.|+.|+||+++.++.+++ .+
T Consensus 180 ~~~~l~G~yA~vi~d~--~~L~aaRDp~GirPL~~g~~-~~~~~vASE~~AL~~~g~~~ir~v~PGeiv~I~~~gv~~~~ 256 (510)
T PRK07847 180 LLPTVRGAFCLVFMDE--HTLYAARDPQGVRPLVLGRL-ERGWVVASETAALDIVGASFVREIEPGELIAIDADGLRSTR 256 (510)
T ss_pred HHHHhhhheEEEEEEC--CEEEEEECCCCCCCcEEEEE-CCeEEEEechHHHhccCCcEEEEECcCEEEEEECCceEEEe
Confidence 8999999999999997 78999999999999999985 6779999999999876 67899999999998876543 33
Q ss_pred eeCCCCC-------cCCCCCC---CCcHHHHHHHHHHHHHHhhcc--ccceEEeecC
Q 010213 190 WYNPTWY-------SEAIPST---PYDPLVLRQAFENAVIKRLMT--DVPFGVLLSG 234 (515)
Q Consensus 190 ~~~~~~~-------~~~~~~~---~~~~~~l~~~l~~aV~~rl~~--~~~v~v~LSG 234 (515)
+|.+... ....|+. ...+.+.|..+-+.+.+.... |.-+.|..||
T Consensus 257 ~~~~~~~~C~fE~vYfarpdS~~~g~~v~~~R~~~G~~La~~~~~~~D~VvpVP~sG 313 (510)
T PRK07847 257 FAEPTPKGCVFEYVYLARPDTTIAGRSVHAARVEIGRRLAREHPVEADLVIPVPESG 313 (510)
T ss_pred ccCCCCCCCeEEEEEecCCcceeCCeEHHHHHHHHHHHHHhhCCCCCeEEEeccCch
Confidence 5543210 0122321 234667777776666655432 2223445553
|
|
| >PLN02440 amidophosphoribosyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-33 Score=288.33 Aligned_cols=180 Identities=26% Similarity=0.397 Sum_probs=156.4
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEE---------------------------ECCEEEEEeeeee
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQ---------------------------HGDFYLAHQRLAI 53 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~---------------------------~~~~~l~h~rl~~ 53 (515)
||||+|+++.+. ....+..|+.+|+|||||+.|++. .+++++||+|+++
T Consensus 1 MCGI~Gi~~~~~----~~~~~~~~L~~LqHRGqds~Gi~~~d~~~~~~~k~~Glv~~vf~~~~l~~l~g~~~IGHvRysT 76 (479)
T PLN02440 1 ECGVVGIFGDPE----ASRLCYLGLHALQHRGQEGAGIVTVDGNRLQSITGNGLVSDVFDESKLDQLPGDIAIGHVRYST 76 (479)
T ss_pred CceEEEEECCcc----HHHHHHHHHHHHHhhCcccceEEEEcCCEEEEEecCCchhhhcchhhhhccCCcEEEEEEeccc
Confidence 999999997431 245688899999999999999976 2347899999999
Q ss_pred cCCC--CCCCceee--CCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHH--------HHhhhhcccc
Q 010213 54 IDPA--SGDQPLYN--EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEY--------GENFVDMLDG 119 (515)
Q Consensus 54 ~~~~--~~~qP~~~--~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~--------G~~~~~~l~G 119 (515)
.+.. .+.||+.. ..++++++|||+|+|+.+|+++| .|+.|.+.||+|+|+++|.++ +.+++++++|
T Consensus 77 ~G~~~~~n~QPf~~~~~~g~~~lahNG~I~N~~eLr~~L~~~g~~f~s~sDsEvi~~li~~~~~~~~~~a~~~~~~~l~G 156 (479)
T PLN02440 77 AGASSLKNVQPFVANYRFGSIGVAHNGNLVNYEELRAKLEENGSIFNTSSDTEVLLHLIAISKARPFFSRIVDACEKLKG 156 (479)
T ss_pred cCCCCccCCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHhcc
Confidence 9863 58999985 35789999999999999999999 688899999999999999765 5788999999
Q ss_pred ceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcCccccccc-CCcceEeCCCeEEEecCCc
Q 010213 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGG 186 (515)
Q Consensus 120 ~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~ 186 (515)
+|++++||. ++++++||++|+|||||+...++.++||||.++|... .+.|+.|+||+++.++.++
T Consensus 157 ~fa~vi~~~--~~l~a~RD~~G~RPL~~g~~~~~~~~vASE~~al~~~g~~~ir~v~PGeiv~i~~~g 222 (479)
T PLN02440 157 AYSMVFLTE--DKLVAVRDPHGFRPLVMGRRSNGAVVFASETCALDLIGATYEREVNPGEVIVVDKDK 222 (479)
T ss_pred ceeeeEEEC--CEEEEEECCCCCCceEEEEeCCCEEEEEECchHHhccCCcEEEEeCCCeEEEEECCC
Confidence 999999997 6799999999999999986545679999999999875 5778999999998887554
|
|
| >PRK05793 amidophosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=277.43 Aligned_cols=183 Identities=25% Similarity=0.389 Sum_probs=156.9
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEEC---------------------------CEEEEEeeeee
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG---------------------------DFYLAHQRLAI 53 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~---------------------------~~~l~h~rl~~ 53 (515)
||||+|+++.+... ....+..++.+|+|||||++|++..+ ++++||+|++|
T Consensus 14 mCGI~Gi~~~~~~~--~~~~~~~gL~~LqhRG~dsaGIa~~~~~~~~~~k~~G~v~~~f~~~~l~~l~g~~~iGHvR~sT 91 (469)
T PRK05793 14 ECGVFGVFSKNNID--VASLTYYGLYALQHRGQESAGIAVSDGEKIKVHKGMGLVSEVFSKEKLKGLKGNSAIGHVRYST 91 (469)
T ss_pred CCeEEEEEcCCCcc--HHHHHHHHHHHHhhhCCCcceEEEEeCCEEEEEecccccccccchhhHhccCCcEEEEEeeccc
Confidence 99999999864311 24567788999999999999997532 47899999999
Q ss_pred cCCC--CCCCceeeC--CCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHH--------Hhhhhcccc
Q 010213 54 IDPA--SGDQPLYNE--DKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG--------ENFVDMLDG 119 (515)
Q Consensus 54 ~~~~--~~~qP~~~~--~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~G--------~~~~~~l~G 119 (515)
.|.. .++||+... +++++++|||+|+|+.+|+++| .|+.|.+.||+|+|++++.+++ .+++++++|
T Consensus 92 ~G~~~~~n~qPf~~~~~~g~~alvhNG~I~N~~eLr~~L~~~g~~f~s~sDSEvi~~li~~~~~~~~~~ai~~~~~~l~G 171 (469)
T PRK05793 92 TGASDLDNAQPLVANYKLGSIAIAHNGNLVNADVIRELLEDGGRIFQTSIDSEVILNLIARSAKKGLEKALVDAIQAIKG 171 (469)
T ss_pred CCCCCCCCCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhh
Confidence 9863 589999864 6889999999999999999999 6889999999999999998875 368899999
Q ss_pred ceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcCccccccc-CCcceEeCCCeEEEecCCceE
Q 010213 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGGLK 188 (515)
Q Consensus 120 ~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~~~ 188 (515)
+|++++++. ++++++||++|+|||||+.. ++.++||||.++|... .+.++.|+||+++.++.++++
T Consensus 172 ~ya~vi~~~--~~l~a~RD~~GirPL~~g~~-~~~~~vASE~~al~~~g~~~~r~v~pGeiv~i~~~g~~ 238 (469)
T PRK05793 172 SYALVILTE--DKLIGVRDPHGIRPLCLGKL-GDDYILSSESCALDTIGAEFIRDVEPGEIVIIDEDGIK 238 (469)
T ss_pred hceEEEEEC--CEEEEEECCCCCCCcEEEEE-CCEEEEEEChHHHhhcCcceEEEeCCCeEEEEECCceE
Confidence 999999987 79999999999999999986 6789999999999764 356889999999988765543
|
|
| >cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-32 Score=260.99 Aligned_cols=183 Identities=26% Similarity=0.407 Sum_probs=157.7
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEEC---------------------------CEEEEEeeeeec
Q 010213 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG---------------------------DFYLAHQRLAII 54 (515)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~---------------------------~~~l~h~rl~~~ 54 (515)
|||+|+++... ....+..|+..|+|||||+.|++..+ .+++||+|+++.
T Consensus 1 Cgi~g~~~~~~----~~~~~~~~l~~l~~RG~D~~Gi~~~d~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~lgH~R~at~ 76 (252)
T cd00715 1 CGVFGIYGAED----AARLTYLGLYALQHRGQESAGIATSDGKRFHTHKGMGLVSDVFDEEKLRRLPGNIAIGHVRYSTA 76 (252)
T ss_pred CEEEEEECCcc----hHHHHHHHHHHHhccCcceeEEEEEeCCEEEEEecCCcHHHhhcccchhhCCCcEEEEEEEcccC
Confidence 99999998632 23457799999999999999987632 368999999999
Q ss_pred CCC--CCCCceee--CCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHHH---------hhhhcccc
Q 010213 55 DPA--SGDQPLYN--EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYGE---------NFVDMLDG 119 (515)
Q Consensus 55 ~~~--~~~qP~~~--~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~G~---------~~~~~l~G 119 (515)
+.. .++||+.. .+++++++|||+|+|+.+|+++| .++.+.+.||+|++++++.+++. ++++.++|
T Consensus 77 g~~~~~n~qPf~~~~~~~~~~~~hNG~I~n~~~L~~~l~~~g~~~~~~tDSEvi~~l~~~~~~~~~~~~al~~~~~~l~G 156 (252)
T cd00715 77 GSSSLENAQPFVVNSPLGGIALAHNGNLVNAKELREELEEEGRIFQTTSDSEVILHLIARSLAKDDLFEAIIDALERVKG 156 (252)
T ss_pred CCCCccCCCCcEEecCCCcEEEEEEEEECCHHHHHHHHHHCCCcccCCCHHHHHHHHHHHhhccCCHHHHHHHHHHhccC
Confidence 863 58999986 35789999999999999999999 57788899999999999999984 58999999
Q ss_pred ceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcCccccccc-CCcceEeCCCeEEEecCCceEEe
Q 010213 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGGLKRW 190 (515)
Q Consensus 120 ~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~~~~~ 190 (515)
+|+++++|+ ++++++||++|.+||||+...++.++||||.++|... .+.++.||||+++.++.+++..+
T Consensus 157 ~~a~~~~d~--~~l~~~RD~~G~~PL~~~~~~~~~~~vASE~~al~~~~~~~~~~l~pg~~~~i~~~~~~~~ 226 (252)
T cd00715 157 AYSLVIMTA--DGLIAVRDPHGIRPLVLGKLEGDGYVVASESCALDIIGAEFVRDVEPGEIVVIDDDGLESS 226 (252)
T ss_pred ceEEEEEEC--CEEEEEECCCCCCCeEEEEeCCCeEEEEECHHHhcccCCcEEEEcCCCeEEEEECCceEEE
Confidence 999999998 8999999999999999988533789999999999875 67899999999998876654433
|
This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer. |
| >PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-32 Score=294.49 Aligned_cols=180 Identities=29% Similarity=0.479 Sum_probs=158.7
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEE---------------------------ECCEEEEEeeeee
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQ---------------------------HGDFYLAHQRLAI 53 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~---------------------------~~~~~l~h~rl~~ 53 (515)
||||+|+++... ....+..|+..|+|||||+.|++. .+++++||+|+++
T Consensus 1 MCGI~g~~~~~~----~~~~~~~~l~~l~hRG~d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~g~~~igH~R~at 76 (604)
T PRK00331 1 MCGIVGYVGQRN----AAEILLEGLKRLEYRGYDSAGIAVLDDGGLEVRKAVGKVANLEAKLEEEPLPGTTGIGHTRWAT 76 (604)
T ss_pred CcEEEEEEcCcc----HHHHHHHHHHHHhccCcCcceEEEEeCCEEEEEECCcCHHHHHhhhccccCCCcEEEEEEecCC
Confidence 999999997532 235677899999999999999986 2357899999999
Q ss_pred cCC--CCCCCceeeCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHH---H-------Hhhhhcccc
Q 010213 54 IDP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEY---G-------ENFVDMLDG 119 (515)
Q Consensus 54 ~~~--~~~~qP~~~~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~---G-------~~~~~~l~G 119 (515)
.|. ..++||+.+..++++++|||+|||+++|+++| .|+.|.+.||+|+|+++|.++ | .+++++|+|
T Consensus 77 ~g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~l~~~g~~~~~~sDsEvi~~l~~~~~~~g~~~~~a~~~~~~~l~G 156 (604)
T PRK00331 77 HGKPTERNAHPHTDCSGRIAVVHNGIIENYAELKEELLAKGHVFKSETDTEVIAHLIEEELKEGGDLLEAVRKALKRLEG 156 (604)
T ss_pred CCCCccccCCccccCCCCEEEEEeEEEcCHHHHHHHHHhCCCcccCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHhccC
Confidence 996 35899999877899999999999999999999 688999999999999999887 5 568999999
Q ss_pred ceEEEEEECCC-CEEEEEecCCCcceeEEEEecCcEEEEEcCcccccccCCcceEeCCCeEEEecCCceE
Q 010213 120 MFSFVLLDTRD-NSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLK 188 (515)
Q Consensus 120 ~fa~v~~d~~~-~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~~ 188 (515)
+|||++||..+ ++++++||+ |||||+.. ++.++||||+++|......+..|+||+++.++.++++
T Consensus 157 ~~a~~~~d~~~~~~l~~~Rd~---~PL~~g~~-~~~~~~aSE~~al~~~~~~~~~l~pg~~~~i~~~~~~ 222 (604)
T PRK00331 157 AYALAVIDKDEPDTIVAARNG---SPLVIGLG-EGENFLASDALALLPYTRRVIYLEDGEIAVLTRDGVE 222 (604)
T ss_pred eeEEEEEecCCCCEEEEEECC---CceEEEEc-CCeEEEEECHHHHHHhcCEEEEECCCeEEEEECCeEE
Confidence 99999999876 899999996 99999985 6789999999999998889999999999887655443
|
|
| >cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-32 Score=261.51 Aligned_cols=174 Identities=28% Similarity=0.384 Sum_probs=149.1
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhcccCCC-CCCceEEE------------------------------------CCE
Q 010213 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGP-DWSGLYQH------------------------------------GDF 44 (515)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGp-d~~g~~~~------------------------------------~~~ 44 (515)
|||+|+++..+... ....+..|+.+|+|||| |++|++.. +.+
T Consensus 1 CGI~G~~~~~~~~~-~~~~~~~~l~~lqhRG~~dsaGia~~~~~~~~~~s~~~~~~~~K~~G~~~~v~~~~~~~~~~~~~ 79 (249)
T cd01907 1 CGIFGIMSKDGEPF-VGALLVEMLDAMQERGPGDGAGFALYGDPDAFVYSSGKDMEVFKGVGYPEDIARRYDLEEYKGYH 79 (249)
T ss_pred CcEEEEEecCCccc-cHHHHHHHHHHHHhcCCCCCceEEEEcCCCeEEEecCCCeEEEeeccCHHHHHhhcCchheEEEE
Confidence 99999998642111 24567889999999999 99999874 247
Q ss_pred EEEEeeeeecCCC--CCCCceeeCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHH----HHH-----
Q 010213 45 YLAHQRLAIIDPA--SGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEE----YGE----- 111 (515)
Q Consensus 45 ~l~h~rl~~~~~~--~~~qP~~~~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~----~G~----- 111 (515)
++||+|++|.+.. .++||+.. ++++++|||+|||+.+|+++| .|+.|.+.||+|++++++.+ +|.
T Consensus 80 ~igH~R~aT~g~~~~~n~qP~~~--~~~~lvhNG~I~N~~~lr~~L~~~g~~~~~~sDsEvi~~ll~~~~~~~g~~~~a~ 157 (249)
T cd01907 80 WIAHTRQPTNSAVWWYGAHPFSI--GDIAVVHNGEISNYGSNREYLERFGYKFETETDTEVIAYYLDLLLRKGGLPLEYY 157 (249)
T ss_pred EEEEEeccCCCCCCccCCCCeec--CCEEEEeCCeecCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhCCChHHHH
Confidence 8999999998852 58999986 479999999999999999999 68899999999999998864 232
Q ss_pred --------------------hhhhccccceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcCccccccc----
Q 010213 112 --------------------NFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD---- 167 (515)
Q Consensus 112 --------------------~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~---- 167 (515)
.++++++|+|+++++++ +.++++||++|.|||||+.. ++.++||||.++|...
T Consensus 158 ~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~--~~~~~~RD~~G~rPL~~g~~-~~~~~~ASE~~al~~~~~~~ 234 (249)
T cd01907 158 KHIIRMPEEERELLLALRLTYRLADLDGPFTIIVGTP--DGFIVIRDRIKLRPAVVAET-DDYVAIASEECAIREIPDRD 234 (249)
T ss_pred HHHhcCCHhHHHHHHHHHHHhCcccCCCCEEEEEEeC--CeEEEEecCCCCccEEEEEE-CCEEEEEEcHHHHhccCccc
Confidence 46799999999999997 67999999999999999985 6789999999999876
Q ss_pred CCcceEeCCCeEEE
Q 010213 168 CEHFEAFPPGHLYS 181 (515)
Q Consensus 168 ~~~i~~l~pG~~~~ 181 (515)
.+.+..++||+++.
T Consensus 235 ~~~~~~l~pGe~v~ 248 (249)
T cd01907 235 NAKVWEPRPGEYVI 248 (249)
T ss_pred hheEecCCCCceEe
Confidence 57788999999875
|
GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits. |
| >PRK09246 amidophosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.2e-32 Score=282.67 Aligned_cols=181 Identities=25% Similarity=0.423 Sum_probs=152.1
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEE---------------------------CCEEEEEeeeee
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH---------------------------GDFYLAHQRLAI 53 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~---------------------------~~~~l~h~rl~~ 53 (515)
||||+|+++.+. ....+..|+.+|+|||||+.|++.. +++++||+|++|
T Consensus 1 MCGI~Gi~~~~~----~~~~~~~~L~aLqHRGqdsaGi~~~~~~~~~~~k~~Glv~~vf~~~~l~~l~g~~~IGHvRysT 76 (501)
T PRK09246 1 MCGIVGIVGHSP----VNQSIYDALTVLQHRGQDAAGIVTIDGNRFRLRKANGLVRDVFRTRHMRRLQGNMGIGHVRYPT 76 (501)
T ss_pred CceEEEEEcCcC----HHHHHHHHHHHHhccCcceeEEEEEeCCEEEEEccCCccccccCcchHhhCCCCEEEEEEcCCc
Confidence 999999997632 2356778999999999999999872 468999999999
Q ss_pred cCCC--CCCCcee-eCCCcEEEEEeeEEcChHHHHHHh-c--CCCccCCChHHHHHHHHHHHH-----------------
Q 010213 54 IDPA--SGDQPLY-NEDKKIVVTVNGEIYNHEALRERL-T--NHKFRTGSDCDVIAHLYEEYG----------------- 110 (515)
Q Consensus 54 ~~~~--~~~qP~~-~~~~~~~~~~nGei~n~~~L~~~l-~--~~~~~~~~D~e~i~~~~~~~G----------------- 110 (515)
.|.. .+.||+. +..++++++|||+|+|+++|+++| . +..|.+.||+|+|++++.++.
T Consensus 77 ~G~~~~~n~QP~~~~~~~g~alahNG~I~N~~eLr~~L~~~~~~~f~s~sDsEvi~~li~~~l~~~~g~~~~~~~l~eai 156 (501)
T PRK09246 77 AGSSSSAEAQPFYVNSPYGITLAHNGNLTNAEELRKELFEKDRRHINTTSDSEVLLNVFAHELQKFRGLPLTPEDIFAAV 156 (501)
T ss_pred CCCCCcccCCCEEEeCCCCEEEEEeEEEcCHHHHHHHHHhcCCCeeecCCHHHHHHHHHHHHHHhccccccCccCHHHHH
Confidence 9963 5899997 444569999999999999999999 3 678999999999999998762
Q ss_pred HhhhhccccceEEEEEECCCCEEEEEecCCCcceeEEEEec---CcEEEEEcCccccccc-CCcceEeCCCeEEEecCCc
Q 010213 111 ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGL---DGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGG 186 (515)
Q Consensus 111 ~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~---~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~ 186 (515)
.+++++++|+|+++++.. .++++++||++|+|||||+... ++.++||||.++|... .+.|+.|+||+++.++.++
T Consensus 157 ~~~~~~l~Gays~v~~~~-~~~l~a~RDp~GirPL~~g~~~~~~~~~~~~ASE~~Al~~~g~~~ir~v~PGeiv~i~~~g 235 (501)
T PRK09246 157 AAVHRRVRGAYAVVAMII-GHGLVAFRDPHGIRPLVLGKRETEGGTEYMVASESVALDALGFEFVRDVAPGEAIYITEDG 235 (501)
T ss_pred HHHHHhcccceeeEEEec-CCcEEEEECCCCCCCeEEEeecCCCCCEEEEEECHHHHHhCCceEEEEeCCCeEEEEECCC
Confidence 157889999999997753 2679999999999999999752 3479999999999875 4668899999998886543
|
|
| >TIGR01134 purF amidophosphoribosyltransferase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=270.89 Aligned_cols=226 Identities=25% Similarity=0.360 Sum_probs=174.5
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEE---------------------------CCEEEEEeeeeec
Q 010213 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH---------------------------GDFYLAHQRLAII 54 (515)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~---------------------------~~~~l~h~rl~~~ 54 (515)
|||+|+++.+.. ....+..|+.+|+|||||++|++.. +++++||+|+++.
T Consensus 1 CGI~Gi~~~~~~---~~~~~~~~L~~lqhRG~ds~Gia~~d~~~~~~~k~~glv~~v~~~~~l~~l~g~~~IgHvR~aT~ 77 (442)
T TIGR01134 1 CGVVGIYSQEED---AASLTYYGLYALQHRGQEAAGIAVSDGNKIRTHKGNGLVSDVFDERHLERLKGNVGIGHVRYSTA 77 (442)
T ss_pred CEEEEEEcCCcc---HHHHHHHHHHHHHhhCccceEEEEEeCCEEEEEEcCCchhhhcchhhhhcccCcEEEEEEEecCC
Confidence 999999986422 2456778999999999999999753 3588999999999
Q ss_pred CCC--CCCCceee-CCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHH----------Hhhhhcccc
Q 010213 55 DPA--SGDQPLYN-EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG----------ENFVDMLDG 119 (515)
Q Consensus 55 ~~~--~~~qP~~~-~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~G----------~~~~~~l~G 119 (515)
+.. .+.|||.. ..++++++|||+|+|+.+|+++| .|+.|.+.||+|+|+++|.+++ .+++++++|
T Consensus 78 G~~~~~n~QPf~~~~~~g~alahNG~I~N~~eLr~~L~~~g~~f~~~sDSEvi~~li~~~~~~~~~~~~ai~~~~~~l~G 157 (442)
T TIGR01134 78 GSSSLSNAQPFVVNSPGGIALAHNGNLVNAEELREELEEEGRIFNTTSDSEVLLHLLARERLEEDDLFEAIARVLKRVRG 157 (442)
T ss_pred CCCCccCCCCEEEeCCCCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhhcccCCHHHHHHHHHHHhCc
Confidence 863 58999984 44559999999999999999999 6788999999999999999876 478999999
Q ss_pred ceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcCcccccc-cCCcceEeCCCeEEEecCCceEEe-eCCCCC-
Q 010213 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLND-DCEHFEAFPPGHLYSSKSGGLKRW-YNPTWY- 196 (515)
Q Consensus 120 ~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~-~~~~i~~l~pG~~~~~~~~~~~~~-~~~~~~- 196 (515)
+|+++++|. ++++++||++|.|||||+.. ++.++||||.++|.. ..+.|+.|+||+++.++.++++.+ +.+...
T Consensus 158 ~falvi~~~--~~L~a~RD~~G~rPL~~g~~-~~~~~~ASE~~al~~~g~~~~r~v~pGeiv~i~~~~~~~~~~~~~~~~ 234 (442)
T TIGR01134 158 AYALVIMIG--DGLIAVRDPHGIRPLVLGKR-GDGYVVASESCALDILGAEFIRDVEPGEAVVIDDGGLESRLFANTPRA 234 (442)
T ss_pred cceEEEEEC--CEEEEEECCCCCCCcEEEEe-CCEEEEEeCchHhcccCCcEEEEECCCeEEEEECCcEEEEeccCCCCc
Confidence 999999986 79999999999999999985 678999999999975 357899999999998876655432 111100
Q ss_pred -------cCCCCCC---CCcHHHHHHHHHHHHHHhhcc--ccceEEeec
Q 010213 197 -------SEAIPST---PYDPLVLRQAFENAVIKRLMT--DVPFGVLLS 233 (515)
Q Consensus 197 -------~~~~~~~---~~~~~~l~~~l~~aV~~rl~~--~~~v~v~LS 233 (515)
....|+. ...+.+.|..+-+.+.+.... |.-++|..|
T Consensus 235 ~c~fe~vYfarpds~~~g~~v~~~R~~~g~~La~~~~~~~D~Vv~VP~s 283 (442)
T TIGR01134 235 PCIFEYVYFARPDSVIDGISVYKARKRMGEKLARESPVEADVVIPVPDS 283 (442)
T ss_pred ceEEEEEEecCCcceECCeEHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 0012221 233556666666666665432 223445555
|
Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase. |
| >TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing) | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-31 Score=287.40 Aligned_cols=179 Identities=30% Similarity=0.487 Sum_probs=157.4
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEE---------------------------ECCEEEEEeeeeec
Q 010213 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQ---------------------------HGDFYLAHQRLAII 54 (515)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~---------------------------~~~~~l~h~rl~~~ 54 (515)
|||+|+++... ....+..|+..|+|||||++|++. .+.+++||+|++|.
T Consensus 1 CGI~g~~~~~~----~~~~~~~~l~~l~hRG~ds~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~igH~R~at~ 76 (607)
T TIGR01135 1 CGIVGYIGQRD----AVPILLEGLKRLEYRGYDSAGIAVVDEGKLFVRKAVGKVQELANKLGEKPLPGGVGIGHTRWATH 76 (607)
T ss_pred CeEEEEECCcc----HHHHHHHHHHHHhccCcccceEEEEeCCEEEEEECCcCHHHHHhhhhcccCCccEEEEEeeccCC
Confidence 99999997432 235678899999999999999987 23568999999999
Q ss_pred CC--CCCCCceeeCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHHH----------hhhhccccc
Q 010213 55 DP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYGE----------NFVDMLDGM 120 (515)
Q Consensus 55 ~~--~~~~qP~~~~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~G~----------~~~~~l~G~ 120 (515)
|. ..++||+...+++++++|||+|||+.+|+++| .|+.|.+.||+|+|+++|.+++. +++++|+|+
T Consensus 77 g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~tDsEvi~~l~~~~~~~~~~~~~ai~~~~~~l~G~ 156 (607)
T TIGR01135 77 GKPTEENAHPHTDEGGRIAVVHNGIIENYAELREELEARGHVFVSDTDTEVIAHLIEEYLREGGDLLEAVQKALKQLRGA 156 (607)
T ss_pred CCCCccCCCCcCcCCCCEEEEEecccCCHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcCc
Confidence 96 35899999888889999999999999999999 58899999999999999999885 689999999
Q ss_pred eEEEEEECCC-CEEEEEecCCCcceeEEEEecCcEEEEEcCcccccccCCcceEeCCCeEEEecCCceE
Q 010213 121 FSFVLLDTRD-NSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLK 188 (515)
Q Consensus 121 fa~v~~d~~~-~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~~ 188 (515)
|||++||... ++++++||+ |||||+.. ++.++||||+++|......+..|+||+++.++.++++
T Consensus 157 ~a~~i~~~~~~~~l~~~Rd~---~PL~~~~~-~~~~~~aSE~~al~~~~~~~~~l~pg~~~~~~~~~~~ 221 (607)
T TIGR01135 157 YALAVLHADHPETLVAARSG---SPLIVGLG-DGENFVASDVTALLPVTRRVIYLEDGDIAILTRDGVR 221 (607)
T ss_pred eEEEEEecCCCCEEEEEECC---CceEEEEC-CCeEEEEEChHHHHhhCCEEEEeCCCeEEEEECCeeE
Confidence 9999999875 469999996 99999985 7789999999999998888999999999887655443
|
The member from Methanococcus jannaschii contains an intein. |
| >cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=240.04 Aligned_cols=129 Identities=23% Similarity=0.387 Sum_probs=113.2
Q ss_pred CCceeeCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHHHhhhhccccceEEEEEECCCCEEEEEe
Q 010213 60 DQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVAR 137 (515)
Q Consensus 60 ~qP~~~~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~G~~~~~~l~G~fa~v~~d~~~~~l~~~r 137 (515)
.|++.+ +++++++||||||+.+|+++| .++.|++.||+|+|+++|++||.+++++|+|||||++||++ ++|+++|
T Consensus 44 ~~~~~~--~~~~iv~NGEIYN~~eLr~~L~~~g~~f~t~sDtEvll~~y~~~G~~~l~~L~G~FAfai~D~~-~~L~laR 120 (199)
T cd01909 44 VQVARS--ETGTAYLIGELYNRDELRSLLGAGEGRSAVLGDAELLLLLLTRLGLHAFRLAEGDFCFFIEDGN-GRLTLAT 120 (199)
T ss_pred eeEeeC--CCEEEEEEEEEeCHHHHHHHHHhcCCCcCCCCHHHHHHHHHHHHhHHHHHHcCEEEEEEEEcCC-CEEEEEE
Confidence 344433 469999999999999999999 57889999999999999999999999999999999999999 9999999
Q ss_pred cCCCcceeEEEEecCcEEEEEcCccccccc------------------CCcceEeCCCeEEEecCC-------ceEEeeC
Q 010213 138 DAIGITSLYIGWGLDGSIWISSELKGLNDD------------------CEHFEAFPPGHLYSSKSG-------GLKRWYN 192 (515)
Q Consensus 138 D~~G~~pLyy~~~~~~~~~faSe~~~l~~~------------------~~~i~~l~pG~~~~~~~~-------~~~~~~~ 192 (515)
|++|+|||||+.. +.++||||+|+|++. +++|++|+|||++.++.. ..++||.
T Consensus 121 Dr~GikPLYy~~~--~~l~FASEikaLla~~~~~~~~d~~~~~~~~T~~~gI~rL~PG~~l~~~~~g~~~~~~~~~~yW~ 198 (199)
T cd01909 121 DHAGSVPVYLVQA--GEVWATTELKLLAAHEGPKAFPFKSAGADTVSGLTGVQRVPPGTVNVLTFDGGSYGTAESRRTWT 198 (199)
T ss_pred CCCCCcCeEEEEC--CeEEEEeCHHHHhhCcCCCcccCcccCCCCCChhcCceEECCCcEEEEeeCCcccceEEEEEeec
Confidence 9999999999873 789999999999642 578999999999865421 3578997
Q ss_pred C
Q 010213 193 P 193 (515)
Q Consensus 193 ~ 193 (515)
|
T Consensus 199 p 199 (199)
T cd01909 199 P 199 (199)
T ss_pred C
Confidence 5
|
Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate ( |
| >cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase) | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.2e-30 Score=242.77 Aligned_cols=178 Identities=38% Similarity=0.594 Sum_probs=154.8
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEEC---------------------------CEEEEEeeeeec
Q 010213 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG---------------------------DFYLAHQRLAII 54 (515)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~---------------------------~~~l~h~rl~~~ 54 (515)
|||+|+++.+............|+..++|||||+.|++..+ .++++|+|+++.
T Consensus 1 Cgi~g~~~~~~~~~~~~~~~~~~~~~~~~rg~dg~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~R~at~ 80 (220)
T cd00352 1 CGIFGIVGADGAASLLLLLLLRGLAALEHRGPDGAGIAVYDGDGLFVEKRAGPVSDVALDLLDEPLKSGVALGHVRLATN 80 (220)
T ss_pred CEEEEEECCCCcchhhHHHHHHHHHhhcccCCccCCeEEECCCceEEEEeccchhhhhhhhhhhccCCCEEEEEeEeeec
Confidence 99999998765433211111468899999999999998765 689999999999
Q ss_pred CC--CCCCCceeeCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHH---------Hhhhhccccce
Q 010213 55 DP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG---------ENFVDMLDGMF 121 (515)
Q Consensus 55 ~~--~~~~qP~~~~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~G---------~~~~~~l~G~f 121 (515)
+. ..++||+....++++++|||+|+|+.+|+++| .+..+.+.||+|+++.+|.+|+ .+++++++|.|
T Consensus 81 g~~~~~n~hPf~~~~~~~~~~hNG~i~n~~~l~~~l~~~~~~~~~~tDse~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 160 (220)
T cd00352 81 GLPSEANAQPFRSEDGRIALVHNGEIYNYRELREELEARGYRFEGESDSEVILHLLERLGREGGLFEAVEDALKRLDGPF 160 (220)
T ss_pred CCCCCCCCCCcCcCCCCEEEEECcEEEcHHHHHHHHHHCCCeecCCCHHHHHHHHHHHHhccCCHHHHHHHHHHhCCccE
Confidence 85 46899998876789999999999999999998 4677889999999999999999 89999999999
Q ss_pred EEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcCcccccccC-CcceEeCCCeE
Q 010213 122 SFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDC-EHFEAFPPGHL 179 (515)
Q Consensus 122 a~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~-~~i~~l~pG~~ 179 (515)
+++++|+.+++++++||++|.+||||....++.++||||..++.... +.+..|+||++
T Consensus 161 ~~~~~d~~~~~l~~~rd~~G~~pL~~~~~~~~~~~~aSe~~~~~~~~~~~~~~l~~g~~ 219 (220)
T cd00352 161 AFALWDGKPDRLFAARDRFGIRPLYYGITKDGGLVFASEPKALLALPFKGVRRLPPGEL 219 (220)
T ss_pred EEEEEECCCCEEEEEECCCCCCCeEEEEeCCCeEEEEecHHHHhhcCcccEEECCCCCC
Confidence 99999998899999999999999999985267899999999998765 67999999986
|
The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format |
| >PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=281.01 Aligned_cols=183 Identities=28% Similarity=0.457 Sum_probs=157.6
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEEC----------------------------------CEEE
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG----------------------------------DFYL 46 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~----------------------------------~~~l 46 (515)
||||+|+++... ....+..++..|+|||||++|++..+ ++++
T Consensus 24 MCGI~G~~~~~~----~~~~~~~~l~~L~hRG~ds~Gia~~~~~~~~~~~k~~g~g~v~~~~~~~~~~~~~~~~~~~~~i 99 (640)
T PTZ00295 24 CCGIVGYLGNED----ASKILLEGIEILQNRGYDSCGISTISSGGELKTTKYASDGTTSDSIEILKEKLLDSHKNSTIGI 99 (640)
T ss_pred CCeEEEEEcCcc----hHHHHHHHHHHHHhcCCCeeEEEEEeCCCcEEEEEeCCCCchHHHHHHHHHHhhcCCCCCcEEE
Confidence 999999997542 24567789999999999999998731 2489
Q ss_pred EEeeeeecCC--CCCCCceeeCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHH---HH-------Hh
Q 010213 47 AHQRLAIIDP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEE---YG-------EN 112 (515)
Q Consensus 47 ~h~rl~~~~~--~~~~qP~~~~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~---~G-------~~ 112 (515)
||+|++|.|. ..++||+.+.+++++++|||+|||+.+||++| .|+.|.+.||+|+|++++.+ +| .+
T Consensus 100 gH~R~at~g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~f~s~tDsEvi~~li~~~~~~g~~~~~a~~~ 179 (640)
T PTZ00295 100 AHTRWATHGGKTDENAHPHCDYKKRIALVHNGTIENYVELKSELIAKGIKFRSETDSEVIANLIGLELDQGEDFQEAVKS 179 (640)
T ss_pred EEeccccCCCCCcCCCCCCCCCCCCEEEEEEEEEcCHHHHHHHHHHCCCcccCCChHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 9999999996 35899999777899999999999999999999 68999999999999999863 33 36
Q ss_pred hhhccccceEEEEEECC-CCEEEEEecCCCcceeEEEEecCcEEEEEcCcccccccCCcceEeCCCeEEEecCCceEEee
Q 010213 113 FVDMLDGMFSFVLLDTR-DNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLKRWY 191 (515)
Q Consensus 113 ~~~~l~G~fa~v~~d~~-~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~~~~~ 191 (515)
++++|+|+||+++||.. .++++++||+ |||||+.. ++.++||||.++|......+..|+||+++.++.++++.|.
T Consensus 180 ~~~~l~G~~a~~~~~~~~~~~l~~~Rd~---~PL~~g~~-~~~~~~aSE~~al~~~~~~~~~l~pGei~~i~~~~~~~~~ 255 (640)
T PTZ00295 180 AISRLQGTWGLCIIHKDNPDSLIVARNG---SPLLVGIG-DDSIYVASEPSAFAKYTNEYISLKDGEIAELSLENVNDLY 255 (640)
T ss_pred HHHHhhhhceEEEEEeCCCCEEEEEECC---CceEEEEc-CceEEEEechHHHHhhCcEEEEeCCCeEEEEECCeEEEEe
Confidence 89999999999999966 4799999997 99999985 6789999999999988888888999999988766665543
|
|
| >cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=225.69 Aligned_cols=138 Identities=29% Similarity=0.562 Sum_probs=122.2
Q ss_pred CceeeCCCcEEEEEeeEEcChHHHHHHhcCCCccCCChHHHHHHHHHHH---H----HhhhhccccceEEEEEECCCCEE
Q 010213 61 QPLYNEDKKIVVTVNGEIYNHEALRERLTNHKFRTGSDCDVIAHLYEEY---G----ENFVDMLDGMFSFVLLDTRDNSF 133 (515)
Q Consensus 61 qP~~~~~~~~~~~~nGei~n~~~L~~~l~~~~~~~~~D~e~i~~~~~~~---G----~~~~~~l~G~fa~v~~d~~~~~l 133 (515)
|-+.+.++++++++||||||+.+|+++|. . .++.+|+|+|+++|++| | .+++++|+|+|||++||.+++++
T Consensus 64 ~rl~~~~~~~~~vfnGeIyN~~eLr~~lg-~-~~t~sD~evIl~lY~~~~d~G~y~~~~~l~~L~G~FAFvi~D~~~~~l 141 (224)
T cd01910 64 PRLFAVKDDIFCLFQGHLDNLGSLKQQYG-L-SKTANEAMLVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDKKTSTV 141 (224)
T ss_pred CcEECCCCCEEEEEEeEEcCHHHHHHHhC-C-CCCCcHHHHHHHHHHHHHhcCCccHHHHHHhcCeEEEEEEEECCCCEE
Confidence 44566778899999999999999999983 2 36789999999999998 7 47999999999999999999999
Q ss_pred EEEecCCCcceeEEEEecCcEEEEEcCcccccccC-CcceEeCCCeEEEecCCceEEeeCCCCCcCCCC
Q 010213 134 IVARDAIGITSLYIGWGLDGSIWISSELKGLNDDC-EHFEAFPPGHLYSSKSGGLKRWYNPTWYSEAIP 201 (515)
Q Consensus 134 ~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~-~~i~~l~pG~~~~~~~~~~~~~~~~~~~~~~~~ 201 (515)
+++||++|++||||+...+|.++||||+++|...| +.+..+||||++.. .+++++|++|.|..+.+|
T Consensus 142 ~lARD~~Gi~PLYyg~~~dG~l~FASElkaL~~~c~~~~~~FPpG~~~~s-~ggl~~~~~p~~~~~~vp 209 (224)
T cd01910 142 FVASDADGSVPLYWGIAADGSVVFSDDVELVKASCGKSFAPFPKGCFFHS-EGGLRSFEHPMNKLKAVP 209 (224)
T ss_pred EEEEcCCCCcceEEEEeCCCEEEEEeCHHHhhhhhccEEEEECCCCEEeC-CCCEEEeeCCCchhhcCC
Confidence 99999999999999976578999999999999988 78999999999886 677999999988654444
|
Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits. |
| >PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-29 Score=215.03 Aligned_cols=119 Identities=44% Similarity=0.755 Sum_probs=75.0
Q ss_pred EeeeeecCCCCCCCcee-eCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHH---HHHhhhhccccce
Q 010213 48 HQRLAIIDPASGDQPLY-NEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEE---YGENFVDMLDGMF 121 (515)
Q Consensus 48 h~rl~~~~~~~~~qP~~-~~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~---~G~~~~~~l~G~f 121 (515)
|+||++.+...+.||+. +.+++++++|||+|||+++|+++| .|+.+.+.+|+|+++++|++ ||.+++++++|+|
T Consensus 1 h~rl~~~~~~~~~QP~~~~~~~~~~l~~nG~i~N~~eL~~~l~~~g~~~~~~~D~e~i~~~~~~~~~~~~~~~~~l~G~f 80 (125)
T PF13537_consen 1 HVRLSTDDSDEGAQPFVSSEDGELVLVFNGEIYNREELRRELEERGHQFSSDSDSELILHLYEEYREWGEDFLKRLDGPF 80 (125)
T ss_dssp ------------------------EEEEEEEES-HHHHHHTSSSS---S--SSHHHHHHHHHHH---HGGGGGGT--EEE
T ss_pred CcccccccccccccccccccccCEEEEEEEEEEChHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCceE
Confidence 89999977778999999 688889999999999999999999 46788999999999999987 9999999999999
Q ss_pred EEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcCcccccc
Q 010213 122 SFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLND 166 (515)
Q Consensus 122 a~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~ 166 (515)
|+++||+.+++++++||++|+|||||+...++.++||||+++|++
T Consensus 81 a~v~~d~~~~~l~~~rD~~G~rpLyy~~~~g~~~~faSe~~~L~a 125 (125)
T PF13537_consen 81 AFVIWDKDKKRLFLARDRFGIRPLYYGRTDGNGLAFASEIKALLA 125 (125)
T ss_dssp EEEEEETTE--EEEEE-TT--S--EEEEETT-EEEEESSHHHHHT
T ss_pred EEEEEeCCCcEEEEEECCCCCCCeEEEEeCCCEEEEEEcHHHhcC
Confidence 999999998899999999999999999863369999999999864
|
|
| >PLN02981 glucosamine:fructose-6-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.8e-28 Score=262.27 Aligned_cols=185 Identities=23% Similarity=0.412 Sum_probs=153.9
Q ss_pred CeEEEEEEcCCCC--chHHHHHHHHHHHhcccCCCCCCceEEEC------------------------------------
Q 010213 1 MCGILAVLGCSDD--SQAKRVRVLELSRRLKHRGPDWSGLYQHG------------------------------------ 42 (515)
Q Consensus 1 McGI~G~~~~~~~--~~~~~~~~~~~~~~l~~RGpd~~g~~~~~------------------------------------ 42 (515)
||||+|+++.... .......+...+.+|+|||+|++|++..+
T Consensus 1 mCGI~g~~~~~~~~~~~~~~~~l~~gL~~Lq~RG~dsaGia~~~~~~~~~~~~~~~k~~G~~~~l~~~~~~~~~~~~l~~ 80 (680)
T PLN02981 1 MCGIFAYLNYNVPRERRFILEVLFNGLRRLEYRGYDSAGIAIDNDPSLESSSPLVFREEGKIESLVRSVYEEVAETDLNL 80 (680)
T ss_pred CceEEEEEccCCccccccHHHHHHHHHHHHhcCCcccceEEEEcCCcccccceEEEEcCCCHHHHHHHHhhhcccccccc
Confidence 9999999975310 11135677888999999999999998731
Q ss_pred ------CEEEEEeeeeecCC--CCCCCceeeC-CCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHH----HH
Q 010213 43 ------DFYLAHQRLAIIDP--ASGDQPLYNE-DKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHL----YE 107 (515)
Q Consensus 43 ------~~~l~h~rl~~~~~--~~~~qP~~~~-~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~----~~ 107 (515)
++++||+||+|.|. ..+.||+... .+.++++|||+|||+.+|+++| .|+.|.+.||+|+|+++ |.
T Consensus 81 ~~~~~g~~~IGH~R~at~g~~~~~n~qP~~~~~~~~ialvhNG~I~N~~eLr~~L~~~G~~f~s~tDtEvi~~li~~~~~ 160 (680)
T PLN02981 81 DLVFENHAGIAHTRWATHGPPAPRNSHPQSSGPGNEFLVVHNGIITNYEVLKETLLRHGFTFESDTDTEVIPKLAKFVFD 160 (680)
T ss_pred ccCCCCcEEEEEcccccCCCCCcCCCCCcccCCCCcEEEEECceEecHHHHHHHHHhCCCeeccCCHHHHHHHHHHHHHH
Confidence 26899999999996 3588999864 3789999999999999999999 78999999999999998 55
Q ss_pred HHHH------------hhhhccccceEEEEEECCC-CEEEEEecCCCcceeEEEEec--C--------------------
Q 010213 108 EYGE------------NFVDMLDGMFSFVLLDTRD-NSFIVARDAIGITSLYIGWGL--D-------------------- 152 (515)
Q Consensus 108 ~~G~------------~~~~~l~G~fa~v~~d~~~-~~l~~~rD~~G~~pLyy~~~~--~-------------------- 152 (515)
+||. +++++|+|+||+++.+... ++++++||+ +||+++... +
T Consensus 161 ~~~~~~~~~~~~~a~~~~~~~l~G~ya~~i~~~~~~~~i~~~r~~---~PL~iG~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (680)
T PLN02981 161 KLNEEEGDVTFSQVVMEVMRQLEGAYALIFKSPHYPNELVACKRG---SPLLLGVKELPEEKNSSAVFTSEGFLTKNRDK 237 (680)
T ss_pred hcccccCCCCHHHHHHHHHHhccCccceEEEecCCCCeEEEEecC---CceEEEecCccccccccccccccccccccccc
Confidence 5543 3899999999999999553 899999996 999998752 1
Q ss_pred -cEEEEEcCcccccccCCcceEeCCCeEEEecCCceE
Q 010213 153 -GSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLK 188 (515)
Q Consensus 153 -~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~~ 188 (515)
+.+++|||.++|....+.|..|+||+++.++.++++
T Consensus 238 ~~~~~~aSe~~al~~~~~~~~~l~~gei~~i~~~~~~ 274 (680)
T PLN02981 238 PKEFFLASDASAVVEHTKRVLVIEDNEVVHLKDGGVG 274 (680)
T ss_pred CCcEEEEeCHHHHHHhcCEEEEECCCeEEEEECCeEE
Confidence 369999999999999999999999999888765443
|
|
| >PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=259.78 Aligned_cols=184 Identities=21% Similarity=0.327 Sum_probs=154.8
Q ss_pred CeEEEEEEcCCCC--chHHHHHHHHHHHhcccCCCCCCceEEE-----------------C-------------------
Q 010213 1 MCGILAVLGCSDD--SQAKRVRVLELSRRLKHRGPDWSGLYQH-----------------G------------------- 42 (515)
Q Consensus 1 McGI~G~~~~~~~--~~~~~~~~~~~~~~l~~RGpd~~g~~~~-----------------~------------------- 42 (515)
||||+|+++.... .......+...+..|+|||+|++|+... +
T Consensus 1 mCGI~g~~~~~~~~~~~~~~~~~~~gL~~Le~RG~dsaGia~~~~~~~~~~~~~~~~~~~~~~~~~k~~G~v~~l~~~~~ 80 (670)
T PTZ00394 1 MCGIFGYANHNVPRTVEQILNVLLDGIQKVEYRGYDSAGLAIDANIGSEKEDGTAASAPTPRPCVVRSVGNISQLREKVF 80 (670)
T ss_pred CceEEEEECCCCccccccHHHHHHHHHHHHhccCcccceEEEecCcccccccccccccCCCcEEEEECCccHHHHHHHHh
Confidence 9999999985410 0013456778899999999999998875 1
Q ss_pred -----------------CEEEEEeeeeecCC--CCCCCceeeCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHH
Q 010213 43 -----------------DFYLAHQRLAIIDP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDV 101 (515)
Q Consensus 43 -----------------~~~l~h~rl~~~~~--~~~~qP~~~~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~ 101 (515)
++++||+||+|.|. ..+.||+.+.+++++++|||+|||+.+||++| .|+.|++.||||+
T Consensus 81 ~~~~~~~~~~~~~~~~g~~~igH~R~at~g~~~~~n~qP~~~~~~~i~vvhNG~I~N~~eLr~~L~~~g~~f~s~tDtEv 160 (670)
T PTZ00394 81 SEAVAATLPPMDATTSHHVGIAHTRWATHGGVCERNCHPQQSNNGEFTIVHNGIVTNYMTLKELLKEEGYHFSSDTDTEV 160 (670)
T ss_pred cchhhhhccccccCCCCCEEEEEeeceecCCCCcCCCCCcCCCCCCEEEEECeeEecHHHHHHHHHHcCCEecCCChHHH
Confidence 15899999999996 35889999888999999999999999999999 7999999999999
Q ss_pred HHHH----HHHHHH--------hhhhccccceEEEEEEC-CCCEEEEEecCCCcceeEEEEecC----------------
Q 010213 102 IAHL----YEEYGE--------NFVDMLDGMFSFVLLDT-RDNSFIVARDAIGITSLYIGWGLD---------------- 152 (515)
Q Consensus 102 i~~~----~~~~G~--------~~~~~l~G~fa~v~~d~-~~~~l~~~rD~~G~~pLyy~~~~~---------------- 152 (515)
|+++ |.+||. +++++|+|+||+++... ..++++++||+ +||+++...+
T Consensus 161 i~~li~~~~~~~g~~~~~~a~~~~~~~l~G~ya~~i~~~~~~~~l~~~Rd~---~PL~iG~~~~~~~~~~~~~~~~~~~~ 237 (670)
T PTZ00394 161 ISVLSEYLYTRKGIHNFADLALEVSRMVEGSYALLVKSVYFPGQLAASRKG---SPLMVGIRRTDDRGCVMKLQTYDLTD 237 (670)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHccCceEEEEEecCCCCEEEEEEcC---CceEEEeccccccccccccccccccc
Confidence 9976 445563 78999999999999863 23899999999 9999998531
Q ss_pred ----cEEEEEcCcccccccCCcceEeCCCeEEEecCCce
Q 010213 153 ----GSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGL 187 (515)
Q Consensus 153 ----~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~ 187 (515)
+.++||||+.+|...++.|..|++|++..+..+.+
T Consensus 238 ~~~~~~~~~aSd~~a~~~~t~~~~~l~dg~~~~~~~~~~ 276 (670)
T PTZ00394 238 LSGPLEVFFSSDVNSFAEYTREVVFLEDGDIAHYCDGAL 276 (670)
T ss_pred cCCCCcEEEEeChHHHHHhhceEEEecCCeEEEEECCEE
Confidence 47999999999999999999999999987765543
|
|
| >COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=230.11 Aligned_cols=239 Identities=24% Similarity=0.330 Sum_probs=179.5
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEECC----------------------------EEEEEeeee
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGD----------------------------FYLAHQRLA 52 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~~----------------------------~~l~h~rl~ 52 (515)
||||+|+++.+.. + ..+.+..++.+|+|||+++.|+...++ +++||+|++
T Consensus 4 ~CGV~Gi~~~~~~-~-a~~~~y~gL~aLQHRGQeaAGI~~~dg~~~~~~K~~GLV~dvF~~~~~~~~l~G~~~IGHvRYs 81 (470)
T COG0034 4 MCGVFGIWGHKDN-N-AAQLTYYGLYALQHRGQEAAGIAVADGKRFHTHKGMGLVSDVFNERDLLRKLQGNVGIGHVRYS 81 (470)
T ss_pred cceEEEEecCCcc-c-hHHHHHHHHHHHhhCCcccccEEEEcCceEEEEecCccchhhcCchhhhhhccCcceeeEeeec
Confidence 9999999987652 2 356788899999999999999976552 378999999
Q ss_pred ecCCC--CCCCceeeC--CCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHH---------Hhhhhcc
Q 010213 53 IIDPA--SGDQPLYNE--DKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG---------ENFVDML 117 (515)
Q Consensus 53 ~~~~~--~~~qP~~~~--~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~G---------~~~~~~l 117 (515)
+.|.. .+.||+... .+.+.++|||.|-|..+|+++| .|..|.++||+|++++++.+.. ...++.+
T Consensus 82 TaG~s~~~naQP~~~~~~~g~ialaHNGnl~N~~~Lr~~l~~~g~~f~t~sDsEvll~l~a~~~~~~~~~~a~~~~~~~v 161 (470)
T COG0034 82 TAGSSSIENAQPFYVNSPGGGIALAHNGNLVNAEELRRELEEEGAIFNTTSDSEVLLHLLARELDEDDIFEAVKEVLRRV 161 (470)
T ss_pred CCCCcccccccceEEecCCCcEEEEecCcccCHHHHHHHHHhcCceecCCccHHHHHHHHHhhcccccHHHHHHHHHhhc
Confidence 99954 588999754 4579999999999999999999 7888999999999999998643 4577899
Q ss_pred ccceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcCccccccc-CCcceEeCCCeEEEe--cCCceEE--eeC
Q 010213 118 DGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSS--KSGGLKR--WYN 192 (515)
Q Consensus 118 ~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~--~~~~~~~--~~~ 192 (515)
.|.|++++... +.|+.+|||.|+|||.++...+|.++||||..+|... .+-++.|+||+++.+ +..++.. +..
T Consensus 162 ~G~ys~v~~~~--~~lia~RDP~GiRPL~iG~~~dG~yvvaSEt~Ald~iGa~~vRdv~pGE~v~i~~~~~g~~s~~~~~ 239 (470)
T COG0034 162 KGAYALVALIK--DGLIAVRDPNGIRPLVLGKLGDGFYVVASETCALDILGAEFVRDVEPGEAVIITIDGDGLESKQVAE 239 (470)
T ss_pred CCcEEEEEEEC--CeEEEEECCCCCccceeeecCCCCEEEEechhhhhcccceEEEecCCceEEEEEecCceeEEEeccC
Confidence 99999999988 6999999999999999998645669999999999765 455789999999774 3322322 222
Q ss_pred CCCC--------cCCCCCC---CCcHHHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHH
Q 010213 193 PTWY--------SEAIPST---PYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITA 246 (515)
Q Consensus 193 ~~~~--------~~~~~~~---~~~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~ 246 (515)
+... ....|+. ...+-..|..+-+.+.+...-+. =.+.|=-||+.-+|+-.
T Consensus 240 ~~~~~~C~fEyVYFARPDS~Idg~sVy~~R~~mG~~La~e~~~ea---DvVipVPDSg~~aAig~ 301 (470)
T COG0034 240 PPRRAPCSFEYVYFARPDSVIDGISVYEARKRMGEKLAEEIPVEA---DVVIPVPDSGRPAAIGY 301 (470)
T ss_pred CCCCccceEEEEEeecCccccCCeeHHHHHHHHHHHHHHhCCccc---cEEEecCCCChHHHHHH
Confidence 2110 0122322 22345566666555554432222 13556689998877643
|
|
| >KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-26 Score=218.17 Aligned_cols=187 Identities=22% Similarity=0.375 Sum_probs=153.1
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEEC----------------------------CEEEEEeeee
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG----------------------------DFYLAHQRLA 52 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~----------------------------~~~l~h~rl~ 52 (515)
||||+|++....-.. -..+.....+|+|||+|+.|+...+ ++++||+|++
T Consensus 1 eCGv~Gi~~a~~~~~--l~~l~~~~~aLQHRGQesAGIvts~~~~~~~~~kG~Gmv~dVFte~~l~~L~g~~gIGH~RYs 78 (474)
T KOG0572|consen 1 ECGVFGIVAAGEASR--LPELALGCVALQHRGQESAGIVTSGGRGRLYQIKGMGLVSDVFTEDKLSQLPGSIGIGHTRYS 78 (474)
T ss_pred CCcEEEEEecCcccc--CcHHHhhhHHHhhCCccccceEeecCCCceEEEeccchhhhhhcHHHHhhCccceeeeeeecc
Confidence 999999997654321 1223333468999999999998765 4899999999
Q ss_pred ecCCC--CCCCceeeC--CCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHH-----H----------H
Q 010213 53 IIDPA--SGDQPLYNE--DKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEY-----G----------E 111 (515)
Q Consensus 53 ~~~~~--~~~qP~~~~--~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~-----G----------~ 111 (515)
+.|.+ .+.|||.-. -|.+.++|||++-|+++||++| .|+.+.|.||+|+|++++... + .
T Consensus 79 TaG~s~~~n~QPFvv~t~~G~lavAHNGnLVN~~~Lrr~l~~~g~~l~T~SDSElil~~~a~~~~~~~~~~~~d~~~ri~ 158 (474)
T KOG0572|consen 79 TAGSSALSNVQPFVVNTPHGSLAVAHNGNLVNYKSLRRELLEEGVGLNTSSDSELILQLIAYAPEDVYRVDAPDWFARIR 158 (474)
T ss_pred cccccccccccceEeeccCceEEEeccCcccchHHHHHHHHhcCcccccCCcHHHHHHHHHhchHhhhcccCccHHHHHH
Confidence 99864 589999743 4779999999999999999999 788999999999999988542 1 4
Q ss_pred hhhhccccceEEEEEECCCCEEEEEecCCCcceeEEEEecC----cEEEEEcCccccccc-CCcceEeCCCeEEEecCCc
Q 010213 112 NFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLD----GSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGG 186 (515)
Q Consensus 112 ~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~----~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~ 186 (515)
.+++.++|.|++++.-. ++|+.+||++|.|||..+.... ..+++|||..+|... .+-.++|.||+++.+....
T Consensus 159 ~~~~~~~g~Yslv~m~~--d~l~avRDp~G~RPL~iG~r~~~~g~~~~v~aSESc~f~~i~a~y~Rev~PGEiV~i~r~g 236 (474)
T KOG0572|consen 159 DVMELLPGAYSLVFMTA--DKLYAVRDPYGNRPLCIGRRSNPDGTEAWVVASESCAFLSIGARYEREVRPGEIVEISRNG 236 (474)
T ss_pred HHHHhcCCceeEEEEEc--cEEEEEecCCCCccceEeeecCCCCcceEEEEecceeeeecccEEEEeecCceEEEEecCC
Confidence 67889999999999987 7799999999999999987432 279999999999876 6677899999998886655
Q ss_pred eEEee
Q 010213 187 LKRWY 191 (515)
Q Consensus 187 ~~~~~ 191 (515)
.+.-|
T Consensus 237 ~~s~~ 241 (474)
T KOG0572|consen 237 VKSVD 241 (474)
T ss_pred ceeee
Confidence 44443
|
|
| >PF13522 GATase_6: Glutamine amidotransferase domain | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-26 Score=199.06 Aligned_cols=127 Identities=36% Similarity=0.677 Sum_probs=115.6
Q ss_pred CCCCce--EEECCEEEEEeeeeecCCC--CCCCceeeCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHH
Q 010213 33 PDWSGL--YQHGDFYLAHQRLAIIDPA--SGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLY 106 (515)
Q Consensus 33 pd~~g~--~~~~~~~l~h~rl~~~~~~--~~~qP~~~~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~ 106 (515)
||..++ +..+.+++||+|+++.|.. .++||+.+.+++++++|||+|+|+.+|+++| .++.|++.||+|+|++++
T Consensus 1 pd~~~~~~~~~~~~~lgH~R~AT~G~~~~~~~hPf~~~~g~~~~~HNG~i~n~~~L~~~l~~~g~~~~~~tDSEii~~li 80 (133)
T PF13522_consen 1 PDFEGLASWLDGEAALGHTRYATVGSPTEENNHPFSNRDGRIALAHNGNIDNYKELREELGEKGHPFESDTDSEIIAALI 80 (133)
T ss_pred CChHHHHHhcCCCEEEEEeecCCCCCCCCcCCCCCcCCCCCEEEEECCeecCHHHHHHHHHHCCCcccCCCHHHHHHHHH
Confidence 566666 5667799999999999964 4669997777889999999999999999999 588899999999999999
Q ss_pred HHHHHhhhhccccceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcC
Q 010213 107 EEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSE 160 (515)
Q Consensus 107 ~~~G~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe 160 (515)
+++|.++++.++|+|++++++...++++++||++|.+||||+.. ++.++||||
T Consensus 81 ~~~g~~~l~~l~G~~a~~~~~~~~~~l~~~rd~~g~~PL~~~~~-~~~~~~ASE 133 (133)
T PF13522_consen 81 HRWGEEALERLDGAFAFAVYDKTPNKLFLARDPLGIRPLYYGRD-GDGYVFASE 133 (133)
T ss_pred HHHHHHHHHHhcCceEEEEEEcCCCEEEEEEcCCCCCCEEEEEc-CCEEEEEeC
Confidence 99999999999999999999988899999999999999999985 788999998
|
|
| >COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.6e-25 Score=227.91 Aligned_cols=179 Identities=28% Similarity=0.455 Sum_probs=154.7
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEEC---------------------------CEEEEEeeeee
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG---------------------------DFYLAHQRLAI 53 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~---------------------------~~~l~h~rl~~ 53 (515)
||||+|+++.+.. ....+.+.++.|.|||.|++|++..+ .+++||+||++
T Consensus 1 MCGIvG~i~~~~~---~~~il~~gL~rLEYRGYDSaGiav~~~~~l~~~k~~Gkv~~l~~~~~~~~~~~~~gIgHTRWAT 77 (597)
T COG0449 1 MCGIVGYIGFLRE---AIDILLEGLKRLEYRGYDSAGIAVVGDGSLNVRKQVGKISNLEELLNKEPLIGGVGIAHTRWAT 77 (597)
T ss_pred CCcEEEEEcCCcc---HHHHHHHHHHHHHccCCCcccEEEEeCCeEEEEEccCCHHHHHhhhcccccCCceeeeeccccC
Confidence 9999999965432 35678888999999999999998753 48899999999
Q ss_pred cCCC--CCCCceeeCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHH--------Hhhhhccccce
Q 010213 54 IDPA--SGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG--------ENFVDMLDGMF 121 (515)
Q Consensus 54 ~~~~--~~~qP~~~~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~G--------~~~~~~l~G~f 121 (515)
.|.. .++||..+ +++++||||.|-|+.+||++| .|+.|+++||||+|.++++++= ...+++|.|.|
T Consensus 78 HG~P~~~NAHPh~~--~~~avVHNGIIeN~~eLr~eL~~~G~~F~S~TDTEVi~hLi~~~~~~~~~~a~~~~l~~l~Gsy 155 (597)
T COG0449 78 HGGPTRANAHPHSD--GEFAVVHNGIIENFAELKEELEAKGYVFKSDTDTEVIAHLLEEIYDTSLLEAVKKVLKRLEGSY 155 (597)
T ss_pred CCCCCcCCCCCCCC--CCEEEEeCchhhCHHHHHHHHHhcCCEEecCCchHHHHHHHHHHHHhHHHHHHHHHHHHhccee
Confidence 9943 58999976 889999999999999999999 7999999999999999997642 35789999999
Q ss_pred EEEEEECCC-CEEEEEecCCCcceeEEEEecCcEEEEEcCcccccccCCcceEeCCCeEEEecCCceE
Q 010213 122 SFVLLDTRD-NSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLK 188 (515)
Q Consensus 122 a~v~~d~~~-~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~~ 188 (515)
|+++.|... ++++++|.. .||..+.. ++..++||++.+++...+.+..|..|++..+..+++.
T Consensus 156 al~~~~~~~p~~i~~ar~~---sPL~iG~g-~~e~f~aSD~~a~l~~t~~~~~l~dgd~~~~~~~~v~ 219 (597)
T COG0449 156 ALLCTHSDFPDELVAARKG---SPLVIGVG-EGENFLASDVSALLNFTRRFVYLEEGDIAKLTTDGVS 219 (597)
T ss_pred EEEEEecCCCCeEEEEcCC---CCeEEEec-CCcceEecChhhhhhhhceEEEeCCCCEEEEECCcEE
Confidence 999999876 689999996 99999985 7788999999999999998988999988766555443
|
|
| >TIGR03442 conserved hypothetical protein TIGR03442 | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-18 Score=167.67 Aligned_cols=174 Identities=23% Similarity=0.243 Sum_probs=132.4
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCCC------------CCCceEEEC--------------------------
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGP------------DWSGLYQHG-------------------------- 42 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGp------------d~~g~~~~~-------------------------- 42 (515)
||+|+|+++.+.. ....+..-...|.+|+- |+.|+....
T Consensus 1 MCr~~gy~g~~~~---l~~~l~~~~~sL~~qs~~~~~~~~~~~~~DGwGia~~~~~~~~~~~~~k~~~pa~~d~~l~~l~ 77 (251)
T TIGR03442 1 MCRHLAYLGAPVS---LADLLLDPPHSLLVQSYQPREMRHGLVNADGFGVGWYDSGKDTVPFRYRSTQPIWNDINFASLA 77 (251)
T ss_pred CceEeeecCCCee---HHHheeCCCcchHHhCcchhhhcCCCcCCCcceEEEecCCCCCCceEEeCCCccccChhHHHHH
Confidence 9999999986321 23344444455555543 888876531
Q ss_pred -----CEEEEEeeeeecCC-C--CCCCceeeCCCcEEEEEeeEEcChH-----HHHHHh--cCC-CccCCChHHHHHHHH
Q 010213 43 -----DFYLAHQRLAIIDP-A--SGDQPLYNEDKKIVVTVNGEIYNHE-----ALRERL--TNH-KFRTGSDCDVIAHLY 106 (515)
Q Consensus 43 -----~~~l~h~rl~~~~~-~--~~~qP~~~~~~~~~~~~nGei~n~~-----~L~~~l--~~~-~~~~~~D~e~i~~~~ 106 (515)
.++++|.|.++.|. . .++|||.. ++++++|||.|.|++ +|+++| .++ .+.+.||+|++++++
T Consensus 78 ~~~~s~~~i~HvR~AT~G~~~~~~N~hPf~~--g~~~~aHNG~i~n~~~~~r~~L~~~l~~~~~~~~~g~TDSE~i~~li 155 (251)
T TIGR03442 78 RYVESGCVLAAVRSATVGMAIDESACAPFSD--GRWLFSHNGFVDNFRQTLYRPLRDRLPDIFYLAIEGSTDSAHLFALL 155 (251)
T ss_pred hhcccceEEEEeeeCCCCCCcchhcCCCCCc--CCEEEEeCCccCCchhhhhHHHHhcCChhhccCCCCCCHHHHHHHHH
Confidence 47899999999983 2 59999985 689999999999997 566666 343 688999999999988
Q ss_pred HHHHH------------hhhhccccc-------eEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcCccccccc
Q 010213 107 EEYGE------------NFVDMLDGM-------FSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD 167 (515)
Q Consensus 107 ~~~G~------------~~~~~l~G~-------fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~ 167 (515)
.+... ++++.+.|. |++++.|+ .+++++||+. ||||... ++.++||||. |-..
T Consensus 156 ~~~~~~~~~~~~~~ai~~~~~~l~~~~~~~~~~~n~~~sdg--~~l~a~R~~~---~L~~~~~-~~~~vvASEp--l~~~ 227 (251)
T TIGR03442 156 LNRLLENDPRALEEALAEVLLILFSAAAAPRVRLNLLLTDG--SRLVATRWAD---TLYWLKD-PEGVIVASEP--YDDD 227 (251)
T ss_pred HHHHhhcCCchHHHHHHHHHHHHHHHhhCcccceEEEEEcC--CEEEEEEeCC---eEEEEEc-CCEEEEEeCC--cCCC
Confidence 76531 356666777 99999998 8999999986 9999875 5689999997 4332
Q ss_pred CCcceEeCCCeEEEecCCceE
Q 010213 168 CEHFEAFPPGHLYSSKSGGLK 188 (515)
Q Consensus 168 ~~~i~~l~pG~~~~~~~~~~~ 188 (515)
..++.|+||+++.+++++++
T Consensus 228 -~~W~~v~pge~v~i~~~~v~ 247 (251)
T TIGR03442 228 -PGWQDVPDRHLLSVSEDDVT 247 (251)
T ss_pred -CCceEeCCCeEEEEECCcEE
Confidence 48999999999998776543
|
Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see Pfam family pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein). |
| >KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.5e-18 Score=167.50 Aligned_cols=186 Identities=23% Similarity=0.348 Sum_probs=137.2
Q ss_pred CeEEEEEEcCCCCch--HHHHHHHHHHHhcccCCCCCCceEEEC-----------------------------------C
Q 010213 1 MCGILAVLGCSDDSQ--AKRVRVLELSRRLKHRGPDWSGLYQHG-----------------------------------D 43 (515)
Q Consensus 1 McGI~G~~~~~~~~~--~~~~~~~~~~~~l~~RGpd~~g~~~~~-----------------------------------~ 43 (515)
||||||+.+.-.... ..-.++...++.|.+||.|++|+..++ .
T Consensus 1 MCGIF~Y~N~l~~R~R~eIid~Li~GLqRLEYRGYDSaGiaId~~~~~s~~~~k~~GkVkaL~e~i~~q~~~l~~~f~sH 80 (670)
T KOG1268|consen 1 MCGIFGYCNFLIERTRGEIIDTLIDGLQRLEYRGYDSAGIAIDGDELESLLIYKQTGKVSSLKEEINNQNLNLDEKFISH 80 (670)
T ss_pred CcceeeeeccccCCcHHHHHHHHHHHHHHhhccCCCCCceeecCCcccchhhhcccCceeehhHHHhhcCcccceeeeee
Confidence 999999998644322 123455566788999999999998765 4
Q ss_pred EEEEEeeeeecCC--CCCCCceeeC-CCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHH----H----
Q 010213 44 FYLAHQRLAIIDP--ASGDQPLYNE-DKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEY----G---- 110 (515)
Q Consensus 44 ~~l~h~rl~~~~~--~~~~qP~~~~-~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~----G---- 110 (515)
++++|+|||+.|. ..++||..+. .+.++++|||-|.|+++|+..| +|+.|+++||||.++.++... +
T Consensus 81 ~gIAHTRWATHGvPs~~NsHP~rSd~~n~FvVVHNGIITNyk~lK~~L~~kG~~FESdTDTEciaKL~~~~~D~~~~~~~ 160 (670)
T KOG1268|consen 81 CGIAHTRWATHGVPSEVNCHPHRSDPSNEFVVVHNGIITNFKELKALLEKKGYVFESDTDTECIAKLYKHIYDTSPEDLD 160 (670)
T ss_pred eeeeeeehhhcCCCCccCCCCCcCCCCCcEEEEEcCeeccHHHHHHHHHhcCceeecccchHHHHHHHHHHHhhCCCccc
Confidence 8899999999994 3589999864 5779999999999999999999 799999999999999988752 2
Q ss_pred -----HhhhhccccceEEEEEECC-CCEEEEEecC----CCcc----------eeEEEEe--------------------
Q 010213 111 -----ENFVDMLDGMFSFVLLDTR-DNSFIVARDA----IGIT----------SLYIGWG-------------------- 150 (515)
Q Consensus 111 -----~~~~~~l~G~fa~v~~d~~-~~~l~~~rD~----~G~~----------pLyy~~~-------------------- 150 (515)
...+++++|.|++++-... -+++...|+- .|.| |+-|...
T Consensus 161 F~~lv~~v~k~lEGaFalvfkS~hfP~e~Va~RrgSPlliGvKs~~kls~d~~~V~y~~~~~~~~~~~~~~d~~~~~~~~ 240 (670)
T KOG1268|consen 161 FHVLVELVLKELEGAFGLLFKSSHFPGEVVAARKGSPLLIGVKSKTKLSVDFFPVEYGDTQEVSYLKLNKTDTKASLHFL 240 (670)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhcCCcceeeeccCCcceeeecccccccccceeeeccccceecccccCCcccccccccc
Confidence 3468899999999863221 1567777774 1221 1222110
Q ss_pred cCc--EEEEEcCcccccccCCcceEeCCCeEEEecCCc
Q 010213 151 LDG--SIWISSELKGLNDDCEHFEAFPPGHLYSSKSGG 186 (515)
Q Consensus 151 ~~~--~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~ 186 (515)
.+. .++|||+..++.++.+.|--|+-+.+..+.+|+
T Consensus 241 ~~~~vEff~aSDasa~IEhT~rV~flEDddia~v~dG~ 278 (670)
T KOG1268|consen 241 AGSPVEFFTASDASALIEHTKRVLFLEDDDIAHVSDGE 278 (670)
T ss_pred cCCceEEEEecCcchhheecceeEEeccCcEEEEecCc
Confidence 011 577888888887777777667777776665554
|
|
| >PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.6e-16 Score=157.38 Aligned_cols=111 Identities=29% Similarity=0.407 Sum_probs=85.2
Q ss_pred CEEEEEeeeeecCCC--CCCCceeeCCCcEEEEEeeEEcChHHHHHHh--cCCCccC----------------CChHHHH
Q 010213 43 DFYLAHQRLAIIDPA--SGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRT----------------GSDCDVI 102 (515)
Q Consensus 43 ~~~l~h~rl~~~~~~--~~~qP~~~~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~----------------~~D~e~i 102 (515)
.++++|+|++|.+.. .++|||. +++|||||.|...+++.+ .+..+.+ .||+|++
T Consensus 196 ~~~i~H~RysTnt~p~w~~AqPf~------~laHNGeInt~~~n~~~l~~r~~~~~~~~~~~~~~~~pi~~~~~SDS~~l 269 (361)
T PF00310_consen 196 HFAIGHQRYSTNTFPSWENAQPFR------ALAHNGEINTIRGNRNWLEARGYKLNSPLFGDLKELLPIVNPGGSDSEVL 269 (361)
T ss_dssp SEEEEEEEE-SSSSCSGGGSSSEE------EEEEEEEETTHHHHHHHHHHHCCCBSSTTCGHHHCC-SSS-TTS-HHHHH
T ss_pred eEEEEEEecCCCCCCcchhcChHH------HhhhccccccHHHHHHHHHhhcccccCccccchhhcccccCCCCChHHHH
Confidence 589999999999854 4899997 799999999999999998 4566655 8999998
Q ss_pred HHHHHHH---H--------------------------------HhhhhccccceEEEEEECCCCEEEEEecCCCcceeEE
Q 010213 103 AHLYEEY---G--------------------------------ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYI 147 (515)
Q Consensus 103 ~~~~~~~---G--------------------------------~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy 147 (515)
..+++.. | ..+++.++|.|++++.|. +.+++++||.|.||+.|
T Consensus 270 ~~~le~l~~~g~~l~~a~~~l~p~~~~~~~~~~~~~~~~y~~~~~~~~~~dGPaai~~~~g--~~~~a~~Dr~GLRP~~~ 347 (361)
T PF00310_consen 270 DNLLELLLRRGRSLEEAMMMLIPPAWENDEDMSPEKRAFYEYHASLMEPWDGPAAIIFTDG--NGVGAFLDRNGLRPLRY 347 (361)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHSGG--TTSCCSTHHHHHHHHHHHHHHCC--CCEEEEEECS--SEEEEEE-TT--S--EE
T ss_pred HHHHHHHHhcCCCHHHHHHhhCCcccccCccCCHHHHHHHHHHHHhhccCCCceEEEEEeC--CEEEEEECCCCCcceEE
Confidence 7776532 2 124678999999999988 67999999999999999
Q ss_pred EEecCcEEEEEcCc
Q 010213 148 GWGLDGSIWISSEL 161 (515)
Q Consensus 148 ~~~~~~~~~faSe~ 161 (515)
+...++.+++|||.
T Consensus 348 ~~~~d~~~v~aSE~ 361 (361)
T PF00310_consen 348 GITEDGLVVLASEA 361 (361)
T ss_dssp EEETTCEEEEESST
T ss_pred EEECCCEEEEEeCC
Confidence 98767889999983
|
This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B .... |
| >cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-16 Score=154.13 Aligned_cols=134 Identities=24% Similarity=0.283 Sum_probs=111.3
Q ss_pred CEEEEEeeeeecCC--CCCCCceeeCCCcEEEEEeeEEcChHHHHHHh--cC-CCccCCChHHHHHHHHHHHH-------
Q 010213 43 DFYLAHQRLAIIDP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TN-HKFRTGSDCDVIAHLYEEYG------- 110 (515)
Q Consensus 43 ~~~l~h~rl~~~~~--~~~~qP~~~~~~~~~~~~nGei~n~~~L~~~l--~~-~~~~~~~D~e~i~~~~~~~G------- 110 (515)
.++++|+|+++.+. ..+.|||.. ++++++|||.|.|+.+|+..+ .+ ..+.+.||+|++++++.+..
T Consensus 81 ~~~l~H~R~At~G~~~~~n~hPf~~--~~~~~~HNG~i~n~~~l~~~l~~~~~~~~~~~tDSE~~~~li~~~l~~~~~~~ 158 (257)
T cd01908 81 PLVLAHVRAATVGPVSLENCHPFTR--GRWLFAHNGQLDGFRLLRRRLLRLLPRLPVGTTDSELAFALLLSRLLERDPLD 158 (257)
T ss_pred cEEEEEEecCCCCCCccccCCCccc--CCEEEEeCCccCCcchhhHHHHhcCccCCccCCHHHHHHHHHHHHHHhcCCcc
Confidence 47899999999984 258999987 479999999999999999998 34 57889999999999886542
Q ss_pred --------Hhhhhccc-----cceEEEEEECCCCEEEEEecCCCcceeEEEEec-----------------CcEEEEEcC
Q 010213 111 --------ENFVDMLD-----GMFSFVLLDTRDNSFIVARDAIGITSLYIGWGL-----------------DGSIWISSE 160 (515)
Q Consensus 111 --------~~~~~~l~-----G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~-----------------~~~~~faSe 160 (515)
.+.++.|. |.|++++.|. ++++++||+. .+||||.... ++.++||||
T Consensus 159 ~~~~~~al~~~~~~l~~~~~~~~~n~~~~dg--~~l~a~r~~~-~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~vvaSE 235 (257)
T cd01908 159 PAELLDAILQTLRELAALAPPGRLNLLLSDG--EYLIATRYAS-APSLYYLTRRAPFGCARLLFRSVTTPNDDGVVVASE 235 (257)
T ss_pred hHHHHHHHHHHHHHHHHhCcCeEEEEEEECC--CEEEEEEeCC-CCceEEEeccccccccccccccccCCCCCEEEEEeC
Confidence 23566777 7899999987 7899999998 8999998753 368999999
Q ss_pred cccccccCCcceEeCCCeEEEecC
Q 010213 161 LKGLNDDCEHFEAFPPGHLYSSKS 184 (515)
Q Consensus 161 ~~~l~~~~~~i~~l~pG~~~~~~~ 184 (515)
.-+... .++.|+||+++.++.
T Consensus 236 ~l~~~~---~w~~v~~ge~~~i~~ 256 (257)
T cd01908 236 PLTDDE---GWTEVPPGELVVVSE 256 (257)
T ss_pred CCCCCC---CceEeCCCEEEEEeC
Confidence 776654 789999999988764
|
YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits. |
| >cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-15 Score=153.82 Aligned_cols=135 Identities=21% Similarity=0.244 Sum_probs=109.5
Q ss_pred CEEEEEeeeeecCCC--CCCCceeeCCCcEEEEEeeEEcChHHHHHHhc--C-----------------CCccCCChHHH
Q 010213 43 DFYLAHQRLAIIDPA--SGDQPLYNEDKKIVVTVNGEIYNHEALRERLT--N-----------------HKFRTGSDCDV 101 (515)
Q Consensus 43 ~~~l~h~rl~~~~~~--~~~qP~~~~~~~~~~~~nGei~n~~~L~~~l~--~-----------------~~~~~~~D~e~ 101 (515)
.++++|+|++|.+.. ..+|||. +++|||||+|+..+++.+. . ....+.||||+
T Consensus 202 ~~al~H~RfSTNT~p~W~~AqPfr------~laHNGEInT~~gnr~~m~are~~~~s~~~g~~~~~~~pi~~~~~SDS~~ 275 (413)
T cd00713 202 AFALVHSRFSTNTFPSWPLAQPFR------YLAHNGEINTIRGNRNWMRAREGLLKSPLFGEDLKKLKPIINPGGSDSAS 275 (413)
T ss_pred EEEEEEEecCCCCCCCcccCCcce------eEEEcccccCHHHHHHHHHHhhhhhcCccchhhHHhcCCcCCCCCChHHH
Confidence 478999999999854 4789996 5999999999999988771 1 12235899999
Q ss_pred HHHHHHHH---H--------------------------------HhhhhccccceEEEEEECCCCEEEEEecCCCcceeE
Q 010213 102 IAHLYEEY---G--------------------------------ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLY 146 (515)
Q Consensus 102 i~~~~~~~---G--------------------------------~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLy 146 (515)
+.++++-. | ..+++.++|.|++++.|. +.++++||+.|.|||+
T Consensus 276 ld~~le~l~~~g~~l~~A~~mliPeaw~~~~~m~~~~r~fYey~~~~me~~dGp~aiv~~dg--~~i~a~rDrnGlRPl~ 353 (413)
T cd00713 276 LDNVLELLVRSGRSLPEAMMMLIPEAWQNNPTMDPELRAFYEYHSSLMEPWDGPAAIAFTDG--RQVGASLDRNGLRPAR 353 (413)
T ss_pred HHHHHHHHHHcCCCHHHHHHHhCChhhccCccCCHHHHHHHHHHHHHhccCCCcEEEEEEeC--CEEEEEeCCCCCcceE
Confidence 88877532 2 135578999999999998 8999999999999999
Q ss_pred EEEecCcEEEEEcCcccccccCCcce---EeCCCeEEEecCC
Q 010213 147 IGWGLDGSIWISSELKGLNDDCEHFE---AFPPGHLYSSKSG 185 (515)
Q Consensus 147 y~~~~~~~~~faSe~~~l~~~~~~i~---~l~pG~~~~~~~~ 185 (515)
|+...++.++||||..++....+.|. +|.||+++.++..
T Consensus 354 ~~~t~d~~~v~ASE~gal~~~~~~V~~kg~l~PGe~v~id~~ 395 (413)
T cd00713 354 YVITKDGLLIMSSEVGVVDVPPEKVVEKGRLGPGEMLLVDLE 395 (413)
T ss_pred EEEECCCEEEEEeCCcccCCCcceeeecCCCCCCeEEEEECC
Confidence 99875667999999999966556675 8999999887643
|
GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits. |
| >cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.1e-13 Score=119.92 Aligned_cols=126 Identities=17% Similarity=0.141 Sum_probs=85.2
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEe--ecCCCChHHHHHHHHHHhCCCceEEEeChhHHHHHHH
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCV--GLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIE 304 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~--~~~~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~ 304 (515)
.+.++||||+||+++++++.+... .++.++++ ++....+...++++|+. |+++..+.++..+..+...
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~~~---------~~v~~v~~~~g~~~~~~~~~~~~~a~~-g~~~~~~~~~~~~~~~~~~ 72 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEKYG---------LNPLAVTVDNGFNSEEAVKNIKNLIKK-GLDLDHLVINPEEMKDLQL 72 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHHhC---------CceEEEEeCCCCCCHHHHHHHHHHHHh-CCCeEEEecCHHHHHHHHH
Confidence 478999999999999999987641 24555555 44333456889999999 8887777777655443322
Q ss_pred HHHH-hhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccccCCccccCCCChHHH
Q 010213 305 EVIY-HVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEF 364 (515)
Q Consensus 305 ~~~~-~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~~~~~~~~~~~ 364 (515)
.... ..+.+ ...........+.+.|++.|++++++|+++||+|+||+.+...+..+.+
T Consensus 73 ~~l~~~~~~p--~~~~~~~~~~~~~~~A~~~g~~~il~G~~~de~~~Gy~~~~~~~~~~~~ 131 (154)
T cd01996 73 ARFKAKVGDP--CWPCDTAIFTSLYKVALKFGIPLIITGENPAQEFGGIREEEGGIIDERR 131 (154)
T ss_pred HHHhcccCCC--ChhhhHHHHHHHHHHHHHhCcCEEEeCcCHHHhcccccccccchhHHHH
Confidence 2211 11222 1222233445677888899999999999999999999987665444443
|
Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus. |
| >PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.6e-12 Score=115.48 Aligned_cols=131 Identities=31% Similarity=0.592 Sum_probs=110.6
Q ss_pred CcEEEEEeeEEcChHHHHHHhcCCCccCCChHHHHHHHHHHH---H----HhhhhccccceEEEEEECCCCEEEEEecCC
Q 010213 68 KKIVVTVNGEIYNHEALRERLTNHKFRTGSDCDVIAHLYEEY---G----ENFVDMLDGMFSFVLLDTRDNSFIVARDAI 140 (515)
Q Consensus 68 ~~~~~~~nGei~n~~~L~~~l~~~~~~~~~D~e~i~~~~~~~---G----~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~ 140 (515)
..+.++|-|.|.|...|++++ |. -++.++.-++.++|+.. | .+.++.|+|.|+||+||..+++++++||.-
T Consensus 75 DdIfCiF~G~L~Nl~~L~qqY-GL-sK~~nEa~~vIEAYrtLRDRgPyPadqvv~~L~G~FaFVlyD~~~~tvf~A~d~~ 152 (228)
T PF12481_consen 75 DDIFCIFLGSLENLCSLRQQY-GL-SKGANEAMFVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDSKTGTVFVARDSD 152 (228)
T ss_pred CCEEEEEecchhhHHHHHHHh-Cc-CcCcchhhhHHHHHHHhhccCCCChHHHHHhccCceEEEEEecCCCcEEEeecCC
Confidence 458999999999999999997 22 25778888999999865 2 578999999999999999999999999999
Q ss_pred CcceeEEEEecCcEEEEEcCcccccccCC-cceEeCCCeEEEecCCceEEeeCCCCCcCCCC
Q 010213 141 GITSLYIGWGLDGSIWISSELKGLNDDCE-HFEAFPPGHLYSSKSGGLKRWYNPTWYSEAIP 201 (515)
Q Consensus 141 G~~pLyy~~~~~~~~~faSe~~~l~~~~~-~i~~l~pG~~~~~~~~~~~~~~~~~~~~~~~~ 201 (515)
|..||||+...||.++||+++..|...|. ..-..|+|+++... ++++.|-.|....+..|
T Consensus 153 G~vpLyWGi~~DGslv~Sdd~~~ik~~C~kS~ApFP~Gc~f~S~-~Gl~sfehP~nk~k~~p 213 (228)
T PF12481_consen 153 GSVPLYWGIAADGSLVFSDDLELIKEGCGKSFAPFPAGCFFSSE-GGLRSFEHPKNKVKAMP 213 (228)
T ss_pred CCcceEEEEeCCCCEEEcCCHHHHHhhhhhccCCCCcceEEEec-CceEeecCCcccccccc
Confidence 99999999988899999999999877764 45689999998876 56778877755444443
|
There are two conserved sequence motifs: YGL and LRDR. |
| >TIGR03573 WbuX N-acetyl sugar amidotransferase | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-11 Score=125.62 Aligned_cols=117 Identities=17% Similarity=0.148 Sum_probs=84.7
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEE--eecCCCChHHHHHHHHHHhCCCceEEEeChhHHHHHHH
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFC--VGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIE 304 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t--~~~~~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~ 304 (515)
.+.|.||||+||+++++++++.. |.++.++| .++....+...++++++++|++|+.+.++.+.+.+...
T Consensus 61 D~iV~lSGGkDSs~la~ll~~~~---------gl~~l~vt~~~~~~~e~~~~n~~~~~~~lgvd~~~i~~d~~~~~~l~~ 131 (343)
T TIGR03573 61 DCIIGVSGGKDSTYQAHVLKKKL---------GLNPLLVTVDPGWNTELGVKNLNNLIKKLGFDLHTITINPETFRKLQR 131 (343)
T ss_pred CEEEECCCCHHHHHHHHHHHHHh---------CCceEEEEECCCCCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHH
Confidence 48899999999999998886544 22344444 44443335569999999999999999988777655555
Q ss_pred HHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccccCCcc
Q 010213 305 EVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (515)
Q Consensus 305 ~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~ 354 (515)
..+.....|. ..........+.+.|++.|++++++|+++||+|+||..
T Consensus 132 ~~~~~~~~pc--~~c~~~~~~~l~~~A~~~gi~~Il~G~~~dE~fgGy~~ 179 (343)
T TIGR03573 132 AYFKKVGDPE--WPQDHAIFASVYQVALKFNIPLIIWGENIAEEYGGDSE 179 (343)
T ss_pred HHHhccCCCc--hhhhhHHHHHHHHHHHHhCCCEEEeCCCHHHhcCCccc
Confidence 4444332221 12223445677888999999999999999999999875
|
This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an |
| >COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.4e-10 Score=115.19 Aligned_cols=133 Identities=23% Similarity=0.242 Sum_probs=100.8
Q ss_pred CEEEEEeeeeecCCC--CCCCceeeCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHH---H------
Q 010213 43 DFYLAHQRLAIIDPA--SGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEE---Y------ 109 (515)
Q Consensus 43 ~~~l~h~rl~~~~~~--~~~qP~~~~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~---~------ 109 (515)
.++++|+|.+|.+.. ..+|||. .++|||||.++.-.++.+ .++.+++.+|+|++..++-- -
T Consensus 203 ~~~l~HsRFSTNT~p~W~~AHPfr------~lvHNGEInT~~gN~nwm~ar~~~~~s~~~~e~~a~l~p~~~~~~sDs~~ 276 (371)
T COG0067 203 AIALVHTRFSTNTFPSWPLAHPFR------LLVHNGEINTYGGNRNWLEARGYKFESPTDGEVLAKLLPILMRGGSDSAS 276 (371)
T ss_pred eEEEEEeccCCCCCCCCCccCcce------eeeecceecccccHHHHHHHhhcccccCccHHHHHHHHHHhcccCCcchh
Confidence 378899999998754 4789996 469999999999998888 68899999999998887731 1
Q ss_pred -----------HH--hhhhccccceEEEEEE-CCCCEEEEEecCCCcceeEEEEecCcEEEEEcCcccccccCCcceEeC
Q 010213 110 -----------GE--NFVDMLDGMFSFVLLD-TRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFP 175 (515)
Q Consensus 110 -----------G~--~~~~~l~G~fa~v~~d-~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~ 175 (515)
|. .-...+.|.||++.-. -......+.+|+.+.+|.+-+.. +..+.++|+..+++.. .-|.
T Consensus 277 ~dn~lE~l~~~G~~l~~a~~m~~P~aw~~~~~~~~~~~afye~~~~l~epwdGpa-~~~f~dgse~gA~ldr----ngLr 351 (371)
T COG0067 277 LDNALELLLLGGRDLYHAAMLLGPEAWVVGTDMDPEGRAFYEDHSALMEPWDGPA-DIVFTDGSEEGAILDR----NGLR 351 (371)
T ss_pred hhHHHHHHHhcCcCchhHHHhcCchhhccCCCCCcceEEEEehhhhCCCCccCCc-ceeEEeeeeeeeeecc----CCCC
Confidence 11 2334678899988754 11256788899999999987763 6678889998888753 3477
Q ss_pred CCeEEEecCCc
Q 010213 176 PGHLYSSKSGG 186 (515)
Q Consensus 176 pG~~~~~~~~~ 186 (515)
|+.++..+++.
T Consensus 352 p~Ry~~t~d~~ 362 (371)
T COG0067 352 PARYWITKDGE 362 (371)
T ss_pred cceEEEecCCE
Confidence 77777665554
|
|
| >COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.6e-10 Score=105.09 Aligned_cols=116 Identities=21% Similarity=0.275 Sum_probs=83.6
Q ss_pred hccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCC--hHHHHHHHHHHhCCCceEEEeChhHH
Q 010213 222 LMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSP--DLKYAKEVADYLGTVHHEFHFTVQDG 299 (515)
Q Consensus 222 l~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~--d~~~A~~va~~lg~~~~~~~~~~~~~ 299 (515)
+.+..++.|++|||.|||+++.+|.+.+ |.++.++|+..+-.+ +.+.|+..|+.+|+.|..+.++.-+
T Consensus 14 ik~~~kv~vAfSGGvDSslLa~la~~~l---------G~~v~AvTv~sP~~p~~e~e~A~~~A~~iGi~H~~i~~~~~~- 83 (269)
T COG1606 14 IKEKKKVVVAFSGGVDSSLLAKLAKEAL---------GDNVVAVTVDSPYIPRREIEEAKNIAKEIGIRHEFIKMNRMD- 83 (269)
T ss_pred HhhcCeEEEEecCCccHHHHHHHHHHHh---------ccceEEEEEecCCCChhhhhHHHHHHHHhCCcceeeehhhcc-
Confidence 3344579999999999999999998877 468999999876543 6789999999999999998865322
Q ss_pred HHHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccccCCc
Q 010213 300 IDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (515)
Q Consensus 300 ~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~ 353 (515)
++..+ .+.+.+.++-....-.+.+.|.+.|.+++++|..+|+++++-|
T Consensus 84 ----~~~~~--n~~~rCY~CK~~v~~~l~~~a~~~Gyd~V~dGtNasDl~~~RP 131 (269)
T COG1606 84 ----PEFKE--NPENRCYLCKRAVYSTLVEEAEKRGYDVVADGTNASDLFDYRP 131 (269)
T ss_pred ----hhhcc--CCCCcchHHHHHHHHHHHHHHHHcCCCEEEeCCcHHHhcCCCc
Confidence 22221 1122111111122234567788899999999999999998444
|
|
| >TIGR00268 conserved hypothetical protein TIGR00268 | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.9e-10 Score=107.32 Aligned_cols=118 Identities=19% Similarity=0.224 Sum_probs=82.2
Q ss_pred HHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCC--ChHHHHHHHHHHhCCCceEEEeC
Q 010213 218 VIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS--PDLKYAKEVADYLGTVHHEFHFT 295 (515)
Q Consensus 218 V~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~--~d~~~A~~va~~lg~~~~~~~~~ 295 (515)
++..+.+..++.+++|||+||+++++++.+.. .++.++++..+.. .|...|+++|+++|++|+++.++
T Consensus 5 l~~~l~~~~~vlVa~SGGvDSs~ll~la~~~g----------~~v~av~~~~~~~~~~e~~~a~~~a~~lgi~~~ii~~~ 74 (252)
T TIGR00268 5 LRNFLKEFKKVLIAYSGGVDSSLLAAVCSDAG----------TEVLAITVVSPSISPRELEDAIIIAKEIGVNHEFVKID 74 (252)
T ss_pred HHHHHHhcCCEEEEecCcHHHHHHHHHHHHhC----------CCEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcH
Confidence 33445556789999999999999999998752 4688888865433 46789999999999999988764
Q ss_pred hhHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccccCC
Q 010213 296 VQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGY 352 (515)
Q Consensus 296 ~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy 352 (515)
+ +.+.+ . ...+..+.......+..+.+.|++.|+++++||+++|+++.++
T Consensus 75 ~--~~~~~---~--~n~~~~c~~ck~~~~~~l~~~A~~~g~~~I~~G~n~dD~~~~r 124 (252)
T TIGR00268 75 K--MINPF---R--ANVEERCYFCKKMVLSILVKEAEKRGYDVVVDGTNADDLFDHR 124 (252)
T ss_pred H--HHHHH---H--hCCCcccchhhHHHHHHHHHHHHHcCCCEEEECCCCccccccc
Confidence 2 21111 1 1122211111222233566778899999999999999987643
|
The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server. |
| >PRK11750 gltB glutamate synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.1e-10 Score=126.69 Aligned_cols=133 Identities=23% Similarity=0.223 Sum_probs=99.1
Q ss_pred CEEEEEeeeeecCCC--CCCCceeeCCCcEEEEEeeEEcChHHHHHHh--cC----------------CCccCCChHHHH
Q 010213 43 DFYLAHQRLAIIDPA--SGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TN----------------HKFRTGSDCDVI 102 (515)
Q Consensus 43 ~~~l~h~rl~~~~~~--~~~qP~~~~~~~~~~~~nGei~n~~~L~~~l--~~----------------~~~~~~~D~e~i 102 (515)
.+++.|+|.+|.+.. ..+|||. .++|||||.-..-.++.+ .+ ..-...||++.+
T Consensus 213 ~~al~HsRFSTNT~PsW~~AqPFR------~laHNGEINTi~gN~nwm~are~~l~s~~~~~~~~~~Pii~~~~SDSa~l 286 (1485)
T PRK11750 213 AICVFHQRFSTNTLPRWPLAQPFR------YLAHNGEINTITGNRQWARARAYKFQTPLIPDLQEAAPFVNETGSDSSSL 286 (1485)
T ss_pred EEEEEECcCCCCCCCCCCcCCCce------eeeeccccccHHHHHHHHHHHHHhccCCCcchHHhhCCcCCCCCChHHHH
Confidence 478999999999865 4689995 589999998655544443 11 111346899886
Q ss_pred HHHHH---HHH--------------------------------HhhhhccccceEEEEEECCCCEEEEEecCCCcceeEE
Q 010213 103 AHLYE---EYG--------------------------------ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYI 147 (515)
Q Consensus 103 ~~~~~---~~G--------------------------------~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy 147 (515)
-..++ ..| ...++.++|.|++++.|. +.++++|||.|.|||.|
T Consensus 287 Dn~lElL~~~G~sl~~A~~mliPeaW~~~~~m~~~~r~fYeY~s~lmEpwdGpaaiv~~~g--~~i~A~~DrnGlRPlr~ 364 (1485)
T PRK11750 287 DNMLELLLAGGMDLFRAMRLLVPPAWQNNPDMDPDLRAFYEFNSMHMEPWDGPAGIVMTDG--RYAACNLDRNGLRPARY 364 (1485)
T ss_pred HHHHHHHHHcCCCHHHHHHHhCCcccccCCCCCHHHHHHHHHHHhhcccCCCCEEEEEEeC--CEEEEecCCCCCccceE
Confidence 55443 333 124566799999999997 89999999999999977
Q ss_pred EEecCcEEEEEcCcccccccCCc-ce--EeCCCeEEEec
Q 010213 148 GWGLDGSIWISSELKGLNDDCEH-FE--AFPPGHLYSSK 183 (515)
Q Consensus 148 ~~~~~~~~~faSe~~~l~~~~~~-i~--~l~pG~~~~~~ 183 (515)
+...++.+++|||..++.-.... ++ +|.||+++.++
T Consensus 365 ~~~~d~~~i~aSE~g~ldi~~~~vvrkg~l~PGemi~id 403 (1485)
T PRK11750 365 VITKDKLITLASEVGIWDYQPDEVVEKGRVGPGELLVID 403 (1485)
T ss_pred EEEcCCEEEEEecceeeecccceeEEecccCCCeEEEEe
Confidence 77667779999999988754444 44 79999998765
|
|
| >PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.2e-10 Score=108.70 Aligned_cols=175 Identities=21% Similarity=0.300 Sum_probs=74.8
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcc------cCCCCCCceEEEC-----------------------------CEE
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLK------HRGPDWSGLYQHG-----------------------------DFY 45 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~------~RGpd~~g~~~~~-----------------------------~~~ 45 (515)
||=++|+-....... . -.+..+. .+=||+.|+.... .++
T Consensus 1 MC~Llg~s~~~p~~~--~----~sl~~~~~~~~~~~~h~DGwGiawy~~~~~~~~k~~~pa~~~~~~~~l~~~~i~S~~~ 74 (271)
T PF13230_consen 1 MCRLLGMSSNRPTDI--N----FSLTSFAARGGKTPPHPDGWGIAWYDGGGPRVFKSPRPAWNSPNLRLLADYKIRSRLF 74 (271)
T ss_dssp -----------------------------------------EEEEEESSSS-EEEEESS-CCC-HHHHHHHH-H-EEEEE
T ss_pred Ccccccccccccccc--c----cccccccccccCcCCCCCeeEEEEEeCCeEEEEECCCCCcCCchHHHHhhCCccCCEE
Confidence 999999976432211 1 1122222 2238888886544 368
Q ss_pred EEEeeeeecCC--CCCCCceeeC--CCcEEEEEeeEEcChHHHHHHhcCCCccCCChHHHHHHHHHHH----H-------
Q 010213 46 LAHQRLAIIDP--ASGDQPLYNE--DKKIVVTVNGEIYNHEALRERLTNHKFRTGSDCDVIAHLYEEY----G------- 110 (515)
Q Consensus 46 l~h~rl~~~~~--~~~~qP~~~~--~~~~~~~~nGei~n~~~L~~~l~~~~~~~~~D~e~i~~~~~~~----G------- 110 (515)
++|.|.|+.|. ..++|||..+ .++++++|||.|.+++.++... +...+.||+|.++.++... +
T Consensus 75 laHvR~AT~G~v~~~N~HPF~~~~~g~~w~FaHNG~i~~f~~~~~~~--~~~~G~TDSE~~F~lll~~l~~~~~~~~~~~ 152 (271)
T PF13230_consen 75 LAHVRAATQGAVSLENCHPFSRELWGRRWLFAHNGTIPGFEDILDDR--YQPVGTTDSEHAFCLLLDQLRDRGPDAPPAL 152 (271)
T ss_dssp EEEE------------SS-EE----ETTEEEEEEEEETTGGGGHHHH--HT--S--HHHHHHHHHHHTTTTT-HH--HHH
T ss_pred EEEecccCCCCCCcccCCCceeccCCCcEEEEeCCccccccccCccc--cccCCCcHHHHHHHHHHHHHHHhCCcccccH
Confidence 99999999884 2589999854 3679999999999987766332 2246789999999987542 1
Q ss_pred -------Hhhhhccc--cceEEEEEECCCCEEEEEecC----CCcceeE-------------E---EEecCcEEEEEcCc
Q 010213 111 -------ENFVDMLD--GMFSFVLLDTRDNSFIVARDA----IGITSLY-------------I---GWGLDGSIWISSEL 161 (515)
Q Consensus 111 -------~~~~~~l~--G~fa~v~~d~~~~~l~~~rD~----~G~~pLy-------------y---~~~~~~~~~faSe~ 161 (515)
.+..+.+. |.+.|++.|. +.+++.|+. .-+++.+ . ....+..++||||
T Consensus 153 ~~~~~~l~~~~~~~~~~~~~N~~lsDG--~~l~a~~~~~l~~~~r~~p~~~~~l~~~~~~~~~~~~~~~~~~~~vVaSe- 229 (271)
T PF13230_consen 153 EELFEALRELAKEINEYGSLNFLLSDG--ERLFAHRYTSLYYLTRRPPFGKARLFDEDYEVDFSEVTDPDDRAVVVASE- 229 (271)
T ss_dssp HHHHHHHHHHHHS-SSSEEEEEEEE-S--S-EEEEEEESSS----------------------EEEEETTTTEEEEESS-
T ss_pred HHHHHHHHHHHHHhccCeeEEEEEECC--ceEEEEEcCCeeEEeccccccccccccchhhhhhhhccCCCCCEEEEEec-
Confidence 12233333 7899999998 799999982 1122211 0 0112456788888
Q ss_pred ccccccCCcceEeCCCeEEEecCCceE
Q 010213 162 KGLNDDCEHFEAFPPGHLYSSKSGGLK 188 (515)
Q Consensus 162 ~~l~~~~~~i~~l~pG~~~~~~~~~~~ 188 (515)
+|-. -+.+..||+|+++.+..|++.
T Consensus 230 -PLt~-~e~W~~vp~g~~l~~~~G~v~ 254 (271)
T PF13230_consen 230 -PLTD-DEDWEPVPPGSLLVFRDGEVV 254 (271)
T ss_dssp ------SS--EE--SSEEEE-------
T ss_pred -cCCC-CCCeEEcCCCcEEEEeccccc
Confidence 4443 246999999999999888753
|
|
| >cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD) | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.1e-09 Score=103.01 Aligned_cols=133 Identities=23% Similarity=0.275 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--CChHHHHHHHHHHh
Q 010213 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYL 285 (515)
Q Consensus 208 ~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--~~d~~~A~~va~~l 285 (515)
+.+...|++.|+.. ....+.+.||||+||+++++++.+.... .++.++++.... ..|...|+++|+++
T Consensus 8 ~~l~~~l~~~~~~~--~~~~vvv~lSGGiDSs~~a~la~~~~~~--------~~v~~~~~~~~~~~~~~~~~a~~~a~~l 77 (248)
T cd00553 8 NALVLFLRDYLRKS--GFKGVVLGLSGGIDSALVAALAVRALGR--------ENVLALFMPSRYSSEETREDAKELAEAL 77 (248)
T ss_pred HHHHHHHHHHHHHh--CCCCEEEeCCCcHHHHHHHHHHHHHhCc--------ccEEEEECCCCCCCHHHHHHHHHHHHHh
Confidence 33444444444443 2356899999999999999999987621 468888887654 35889999999999
Q ss_pred CCCceEEEeChhHHHHHHHHHHHhh--ccCCC---CcccchHHHHHHHHHHHhCCCeEEEeccCccccccCCc
Q 010213 286 GTVHHEFHFTVQDGIDAIEEVIYHV--ETYDV---TTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (515)
Q Consensus 286 g~~~~~~~~~~~~~~~~l~~~~~~~--e~~~~---~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~ 353 (515)
|++|+++.+++ ..+.+...+... +.+.. ..+...+.+..++..|.+.|..|+-||+ .+|++.||.
T Consensus 78 gi~~~~i~i~~--~~~~~~~~~~~~~~~~~~~~~~~n~~ar~R~~~Ly~~A~~~~~~vlgTgn-~~E~~~G~~ 147 (248)
T cd00553 78 GIEHVNIDIDP--AVEAFLALLGESGGSELEDLALGNIQARLRMVILYALANKLGGLVLGTGN-KSELLLGYF 147 (248)
T ss_pred CCeEEEeccHH--HHHHHHHHHhhhcccchhhHHHHhhHHHHHHHHHHHHHHhcCCEEEcCCc-HhHHHhCCe
Confidence 99999877643 233222222110 11111 1111223344567778888998999987 667787874
|
The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source . |
| >PRK14561 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.4e-09 Score=99.49 Aligned_cols=106 Identities=23% Similarity=0.273 Sum_probs=74.0
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCChHHHHHHHHHHhCCCceEEEeChhHHHHHHHHH
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEV 306 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~~~ 306 (515)
+|+++||||+||+++++++.+.. ...+.+++.++ .+|.++|+++|+.+|++|+.+.++.+. .+...+.
T Consensus 2 kV~ValSGG~DSslll~~l~~~~---------~v~a~t~~~g~--~~e~~~a~~~a~~lGi~~~~v~~~~~~-~~~~~~~ 69 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERFY---------DVELVTVNFGV--LDSWKHAREAAKALGFPHRVLELDREI-LEKAVDM 69 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhcC---------CeEEEEEecCc--hhHHHHHHHHHHHhCCCEEEEECCHHH-HHHHHHH
Confidence 48999999999999999886541 12334455544 468999999999999999999987654 5555555
Q ss_pred HHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCcccc
Q 010213 307 IYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (515)
Q Consensus 307 ~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDel 348 (515)
.+..+.|... ...+..+++.. ++ .|++++.+|+..|.+
T Consensus 70 ~~~~~~P~~~--~~~l~~~~l~~-~a-~g~~~Ia~G~n~DD~ 107 (194)
T PRK14561 70 IIEDGYPNNA--IQYVHEHALEA-LA-EEYDVIADGTRRDDR 107 (194)
T ss_pred HHHcCCCCch--hHHHHHHHHHH-HH-cCCCEEEEEecCCCc
Confidence 6555544321 12233334444 33 889999999999984
|
|
| >TIGR00552 nadE NAD+ synthetase | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.9e-09 Score=104.59 Aligned_cols=135 Identities=20% Similarity=0.194 Sum_probs=89.0
Q ss_pred cHHHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC---CCChHHHHHHHH
Q 010213 206 DPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE---GSPDLKYAKEVA 282 (515)
Q Consensus 206 ~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~---~~~d~~~A~~va 282 (515)
..+++.+.|.++|+.+..+ .|.+.||||+||+++++++.+... ..+.++.+... ...|...|+++|
T Consensus 5 ~~~~l~~~l~~~v~~~~~~--~V~vglSGGiDSsvla~l~~~~~~---------~~~~~~~~~~~~~~~~~e~~~a~~~a 73 (250)
T TIGR00552 5 YVEEIEDFLRGYVQKSGAK--GVVLGLSGGIDSAVVAALCVEALG---------EQNHALLLPHSVQTPEQDVQDALALA 73 (250)
T ss_pred HHHHHHHHHHHHHHHhCCC--CEEEECCCcHHHHHHHHHHHHhhC---------CceEEEEECCccCCCHHHHHHHHHHH
Confidence 4578999999999988544 466679999999999999987651 24445544322 224889999999
Q ss_pred HHhCCCceEEEeChhHHHHHHHHHHHhh-ccCC---CCcccchHHHHHHHHHHHhCCCeEEEeccCccccccCCcc
Q 010213 283 DYLGTVHHEFHFTVQDGIDAIEEVIYHV-ETYD---VTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (515)
Q Consensus 283 ~~lg~~~~~~~~~~~~~~~~l~~~~~~~-e~~~---~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~ 354 (515)
+.+|++++++.+++.. ..+....... +... ...++..+.+..+...|.+.|+.++.||+.. |.+.||..
T Consensus 74 ~~lgi~~~~i~i~~~~--~~~~~~~~~~~~~~~~~~~~n~car~R~~~L~~~A~~~g~~~laTgh~~-E~~~G~~t 146 (250)
T TIGR00552 74 EPLGINYKNIDIAPIA--ASFQAQTETGDELSDFLAKGNLKARLRMAALYAIANKHNLLVLGTGNKS-ELMLGYFT 146 (250)
T ss_pred HHhCCeEEEEcchHHH--HHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCcHH-HHhhCCee
Confidence 9999999988765432 2111100000 0000 0111222445677788889999999999997 45667743
|
NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity. |
| >cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.2e-09 Score=98.93 Aligned_cols=110 Identities=20% Similarity=0.234 Sum_probs=75.8
Q ss_pred eEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--CChHHHHHHHHHHhCCCceEEEeChhHHHHHHHH
Q 010213 228 FGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEE 305 (515)
Q Consensus 228 v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~~ 305 (515)
|.+++|||+||++++.++.+.. +.++.++++.... ..|...++++|+++|++|+.+.++... ...+
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~---------~~~v~~v~vd~g~~~~~~~~~~~~~a~~lgi~~~~~~~~~~~-~~~~-- 68 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDAL---------GDRVLAVTATSPLFPRRELEEAKRLAKEIGIRHEVIETDELD-DPEF-- 68 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHh---------CCcEEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCccc-cHHH--
Confidence 4689999999999999998764 1367888875443 357889999999999999998876311 1111
Q ss_pred HHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccccCC
Q 010213 306 VIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGY 352 (515)
Q Consensus 306 ~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy 352 (515)
. ..............+-.+.+.+++.|+.+++||+.+|+.+.++
T Consensus 69 --~-~~~~~~~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~dD~~e~~ 112 (202)
T cd01990 69 --A-KNPPDRCYLCKKALYEALKEIAEELGLDVVLDGTNADDLGDYR 112 (202)
T ss_pred --h-cCCCCccchhHHHHHHHHHHHHHHCCCCEEEEcCccccCcccC
Confidence 1 0111111111122233556778889999999999999998764
|
Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus. |
| >PRK13980 NAD synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.5e-09 Score=101.68 Aligned_cols=133 Identities=24% Similarity=0.257 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--CChHHHHHHHHHHh
Q 010213 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYL 285 (515)
Q Consensus 208 ~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--~~d~~~A~~va~~l 285 (515)
+++...+.+.|+.. ....+.+.||||+||+++++++.+.... .++.++++.... ..|...|+++|+++
T Consensus 15 ~~l~~~l~~~v~~~--g~~~vvv~lSGGiDSsv~a~l~~~~~~~--------~~v~av~~~~~~~~~~~~~~a~~la~~l 84 (265)
T PRK13980 15 EIIVDFIREEVEKA--GAKGVVLGLSGGIDSAVVAYLAVKALGK--------ENVLALLMPSSVSPPEDLEDAELVAEDL 84 (265)
T ss_pred HHHHHHHHHHHHHc--CCCcEEEECCCCHHHHHHHHHHHHHhCc--------cceEEEEeeCCCCCHHHHHHHHHHHHHh
Confidence 34444555555443 2256889999999999999999886521 468888887553 35788999999999
Q ss_pred CCCceEEEeChhHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccccCCc
Q 010213 286 GTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (515)
Q Consensus 286 g~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~ 353 (515)
|++|+++.+++ ..+.+.......+......+.....+..++..|.+.|..|+-||...+ ++.||.
T Consensus 85 gi~~~~i~i~~--~~~~~~~~~~~~~~~~~~n~~aR~R~~~L~~~A~~~g~lvlgTgn~sE-~~~G~~ 149 (265)
T PRK13980 85 GIEYKVIEITP--IVDAFFSAIPDADRLRVGNIMARTRMVLLYDYANRENRLVLGTGNKSE-LLLGYF 149 (265)
T ss_pred CCCeEEEECHH--HHHHHHHHcccccchHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCHhH-HHhCCc
Confidence 99999887653 233332221100001111122233445677778889999999997765 455664
|
|
| >PRK00876 nadE NAD synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.4e-08 Score=101.12 Aligned_cols=83 Identities=25% Similarity=0.279 Sum_probs=66.1
Q ss_pred CcHHHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC--CCChHHHHHHHH
Q 010213 205 YDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVA 282 (515)
Q Consensus 205 ~~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~--~~~d~~~A~~va 282 (515)
+..+.+.+.|+++|+.++.++ ++++.||||+||+++++++.+.... .++.++.+... ..+|...|+.+|
T Consensus 14 ~~~e~i~~~l~~~V~~~~~~~-~VvVgLSGGIDSSvvaaLa~~a~g~--------~~v~av~~~~~~s~~~e~~~A~~lA 84 (326)
T PRK00876 14 AEAERIRAAIREQVRGTLRRR-GVVLGLSGGIDSSVTAALCVRALGK--------ERVYGLLMPERDSSPESLRLGREVA 84 (326)
T ss_pred HHHHHHHHHHHHHHHHHcCCC-CEEEEccCCHHHHHHHHHHHHhhCC--------CcEEEEEecCCCCChHHHHHHHHHH
Confidence 356789999999999988776 7999999999999999999876521 23444444322 336889999999
Q ss_pred HHhCCCceEEEeCh
Q 010213 283 DYLGTVHHEFHFTV 296 (515)
Q Consensus 283 ~~lg~~~~~~~~~~ 296 (515)
+++|++|+.+.+++
T Consensus 85 ~~LGi~~~~i~i~~ 98 (326)
T PRK00876 85 EHLGVEYVVEDITP 98 (326)
T ss_pred HHcCCCEEEEECch
Confidence 99999999998875
|
|
| >PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.5e-08 Score=102.79 Aligned_cols=113 Identities=20% Similarity=0.160 Sum_probs=80.2
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC------------CChHHHHHHHHHHhCCCceEEEe
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG------------SPDLKYAKEVADYLGTVHHEFHF 294 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~------------~~d~~~A~~va~~lg~~~~~~~~ 294 (515)
+|++++|||+||+++++++.+.. .++.++++.... ..|...|+++|+++|++|+.+.+
T Consensus 2 kVlValSGGvDSsvla~lL~~~G----------~~V~~v~~~~~~~~~~~~~~~~~s~~d~~~a~~~a~~LgIp~~vvd~ 71 (346)
T PRK00143 2 RVVVGMSGGVDSSVAAALLKEQG----------YEVIGVFMKLWDDDDETGKGGCCAEEDIADARRVADKLGIPHYVVDF 71 (346)
T ss_pred eEEEEecCCHHHHHHHHHHHHcC----------CcEEEEEEeCCCcccccccCCcCcHHHHHHHHHHHHHcCCcEEEEeC
Confidence 58999999999999999998742 568888876521 24678999999999999999988
Q ss_pred ChhHHHHHHHHHHH---hhccCCCCcccchHH-HHHHHHHHHhCCCeEEEeccCccccc
Q 010213 295 TVQDGIDAIEEVIY---HVETYDVTTIRASTP-MFLMSRKIKSLGVKMVISGEGSDEIF 349 (515)
Q Consensus 295 ~~~~~~~~l~~~~~---~~e~~~~~~~~~~~~-~~~l~~~a~~~g~~vlltG~GgDelf 349 (515)
..+...+.++.++. ...+|+++..++... ...+.+.|.+.|++.+.||+.+|...
T Consensus 72 ~~~f~~~vi~~~~~~~~~g~tpnpc~~C~r~ik~~~l~~~A~~~g~~~IATGH~a~d~~ 130 (346)
T PRK00143 72 EKEFWDRVIDYFLDEYKAGRTPNPCVLCNKEIKFKAFLEYARELGADYIATGHYARIRD 130 (346)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcChhhhHHHHHHHHHHHHHHCCCCEEEeeeeccccc
Confidence 65433333322222 123444444333322 34567888899999999999998754
|
|
| >COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.5e-08 Score=100.31 Aligned_cols=112 Identities=21% Similarity=0.144 Sum_probs=80.4
Q ss_pred ccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC---------CChHHHHHHHHHHhCCCceEEEeC
Q 010213 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG---------SPDLKYAKEVADYLGTVHHEFHFT 295 (515)
Q Consensus 225 ~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~---------~~d~~~A~~va~~lg~~~~~~~~~ 295 (515)
..+|.|.+|||+|||+.|+++++.. ..+..+++..-. ..|...|++||+.+|++|+.+++.
T Consensus 3 ~~kV~v~mSGGVDSSVaA~lLk~QG----------yeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~vdf~ 72 (356)
T COG0482 3 KKKVLVGMSGGVDSSVAAYLLKEQG----------YEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYVVDFE 72 (356)
T ss_pred CcEEEEEccCCHHHHHHHHHHHHcC----------CeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhCCceEEEchH
Confidence 3568999999999999999999864 678777763211 147789999999999999999886
Q ss_pred hhHHH---HHHHHHHHhhccCCCCcccchHHHH-HHHHHHHhCCCeEEEeccCcc
Q 010213 296 VQDGI---DAIEEVIYHVETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSD 346 (515)
Q Consensus 296 ~~~~~---~~l~~~~~~~e~~~~~~~~~~~~~~-~l~~~a~~~g~~vlltG~GgD 346 (515)
.+..- +.+.+-.....+|+++..+|....+ .+.+.|.+.|++.+.||+.+-
T Consensus 73 ~~y~~~V~~~f~~~Y~~G~TPNPci~CN~~iKF~~~l~~a~~lgad~iATGHYar 127 (356)
T COG0482 73 KEFWNKVFEYFLAEYKAGKTPNPCILCNKEIKFKALLDYAKELGADYIATGHYAR 127 (356)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcchhcCHHHHHHHHHHHHHHcCCCeEEEeeeEe
Confidence 54321 2222222234577766656554444 456778889999999998764
|
|
| >cd01998 tRNA_Me_trans tRNA methyl transferase | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.2e-08 Score=101.71 Aligned_cols=113 Identities=22% Similarity=0.181 Sum_probs=78.3
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC----------CCChHHHHHHHHHHhCCCceEEEeCh
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE----------GSPDLKYAKEVADYLGTVHHEFHFTV 296 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~----------~~~d~~~A~~va~~lg~~~~~~~~~~ 296 (515)
+|++++|||+||+++++++.+.. .++.++++... ...|...|+++|+.+|++|+.+.++.
T Consensus 1 kVlValSGGvDSsvla~lL~~~g----------~~v~~v~i~~~~~~~~~~~~~s~~d~~~a~~va~~lgI~~~vvd~~~ 70 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKEQG----------YEVIGVFMKNWDEDDGKGGCCSEEDLKDARRVADQLGIPHYVVNFEK 70 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHHcC----------CcEEEEEEecccccccccCCCCHHHHHHHHHHHHHhCCcEEEEECcH
Confidence 47899999999999999998753 46777766321 12578899999999999999998876
Q ss_pred hHHHHHHHHHHH---hhccCCCCcccchHH-HHHHHHHHHhCCCeEEEeccCccccc
Q 010213 297 QDGIDAIEEVIY---HVETYDVTTIRASTP-MFLMSRKIKSLGVKMVISGEGSDEIF 349 (515)
Q Consensus 297 ~~~~~~l~~~~~---~~e~~~~~~~~~~~~-~~~l~~~a~~~g~~vlltG~GgDelf 349 (515)
+...+.+...+. ...+|+++..++... ...+.+.|.+.|++.+.||+.+|...
T Consensus 71 ~f~~~v~~~~i~~~~~g~tpnpc~~C~r~ikf~~l~~~A~~~g~~~IatGHya~d~~ 127 (349)
T cd01998 71 EYWEKVFEPFLEEYKKGRTPNPDILCNKEIKFGALLDYAKKLGADYIATGHYARIEE 127 (349)
T ss_pred HHHHHHHHHHHHHHHcCCCCCchHhhhhHHHHHHHHHHHHHcCcCEEEECCcCCeee
Confidence 443333322222 122344433333322 23556778899999999999998765
|
This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence. |
| >cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.1e-08 Score=92.74 Aligned_cols=116 Identities=20% Similarity=0.217 Sum_probs=75.5
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC--C--CChHHHHHHHHHHhCCCceEEEeChhHHHHH
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--G--SPDLKYAKEVADYLGTVHHEFHFTVQDGIDA 302 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~--~--~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~ 302 (515)
+|.+.+|||.||++++.++.+...... .+.++.++++... . ..+..+++++|+.+|++++.+.++... ..
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~ 74 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYP----YGFELEALTVDEGIPGYRDESLEVVERLAEELGIELEIVSFKEEY--TD 74 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcC----CCeEEEEEEEECCCCCCcHHHHHHHHHHHHHcCCceEEEehhhhc--ch
Confidence 478999999999999999987643110 0136777777543 2 246789999999999999988775321 00
Q ss_pred HHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccc
Q 010213 303 IEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIF 349 (515)
Q Consensus 303 l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf 349 (515)
... ....................+.+.+++.|+.++++|+.+|++.
T Consensus 75 ~~~-~~~~~~~~~~~~c~~~r~~~l~~~a~~~g~~~l~~Gh~~dD~~ 120 (185)
T cd01993 75 DIE-VKKRGGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNLDDEA 120 (185)
T ss_pred hhh-hhccCCCCCCCccHHHHHHHHHHHHHHcCCCEEEEcCChHHHH
Confidence 000 0000111111112234455677888999999999999999864
|
Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus. |
| >PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.1e-09 Score=104.23 Aligned_cols=114 Identities=18% Similarity=0.120 Sum_probs=70.2
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCC-----------ChHHHHHHHHHHhCCCceEEEeC
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS-----------PDLKYAKEVADYLGTVHHEFHFT 295 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~-----------~d~~~A~~va~~lg~~~~~~~~~ 295 (515)
+|.|.+|||+|||+.|+++++.+ .++..+++..-+. .|...|+++|++||++|+.+++.
T Consensus 2 kV~vamSGGVDSsvaA~LLk~~G----------~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~LgIp~~v~d~~ 71 (356)
T PF03054_consen 2 KVLVAMSGGVDSSVAAALLKEQG----------YDVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLGIPHYVVDLR 71 (356)
T ss_dssp EEEEE--SSHHHHHHHHHHHHCT-----------EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT--EEEEETH
T ss_pred eEEEEccCCHHHHHHHHHHHhhc----------ccceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcCCCEEEEChH
Confidence 58899999999999999999864 7888888765432 25788999999999999999986
Q ss_pred hhHH---HHHHHHHHHhhccCCCCcccchHHH-HHHHHHHHh-CCCeEEEeccCcccccc
Q 010213 296 VQDG---IDAIEEVIYHVETYDVTTIRASTPM-FLMSRKIKS-LGVKMVISGEGSDEIFG 350 (515)
Q Consensus 296 ~~~~---~~~l~~~~~~~e~~~~~~~~~~~~~-~~l~~~a~~-~g~~vlltG~GgDelf~ 350 (515)
.+-. ++.+-+......+|+++..+|..-. -.+.+.|.+ .|++.+-||+.|--...
T Consensus 72 ~~f~~~Vi~~f~~~Y~~G~TPNPcv~CN~~IKF~~l~~~a~~~~g~d~iATGHYAri~~~ 131 (356)
T PF03054_consen 72 EEFWEEVIEPFLDEYRKGRTPNPCVLCNRFIKFGALLEYADEGLGADYIATGHYARIEKD 131 (356)
T ss_dssp HHHHHHTHHHHHHHHHTT----HHHHHHHHTTTTHHHHHHHTTTT-SEEE---SEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCChHHhhchhhhHHHHHHHHHhhcCCCeeccceeEEEEee
Confidence 5432 2222222233456765544443222 256778888 89999999999876554
|
; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A. |
| >PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.1e-08 Score=101.56 Aligned_cols=113 Identities=18% Similarity=0.110 Sum_probs=76.7
Q ss_pred ccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC---C-ChHHHHHHHHHHhCCCceEEEeChhH
Q 010213 223 MTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG---S-PDLKYAKEVADYLGTVHHEFHFTVQD 298 (515)
Q Consensus 223 ~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~---~-~d~~~A~~va~~lg~~~~~~~~~~~~ 298 (515)
..+.+|.+++|||+||+++++++++.. .++.++++.... + .|...|+++|+++|++|+.+.++..
T Consensus 3 ~~~~kVlValSGGVDSsvaa~LL~~~G----------~~V~~v~~~~~~~~~~~~d~~~a~~va~~LgIp~~vvd~~~~- 71 (360)
T PRK14665 3 EKNKRVLLGMSGGTDSSVAAMLLLEAG----------YEVTGVTFRFYEFNGSTEYLEDARALAERLGIGHITYDARKV- 71 (360)
T ss_pred CCCCEEEEEEcCCHHHHHHHHHHHHcC----------CeEEEEEEecCCCCCChHHHHHHHHHHHHhCCCEEEEecHHH-
Confidence 456789999999999999999998753 578888875432 2 3578899999999999998876532
Q ss_pred HHHHH----HHHHHhhccCCCCcccchHHH-HHHHHHHHhCCCeEEEeccCcc
Q 010213 299 GIDAI----EEVIYHVETYDVTTIRASTPM-FLMSRKIKSLGVKMVISGEGSD 346 (515)
Q Consensus 299 ~~~~l----~~~~~~~e~~~~~~~~~~~~~-~~l~~~a~~~g~~vlltG~GgD 346 (515)
+...+ .+......++.++..++.... -.+.+.|.+.|++.+.|||.+.
T Consensus 72 f~~~v~~~f~~~y~~g~tpnpC~~Cnr~ikf~~l~~~A~~~G~~~IATGHya~ 124 (360)
T PRK14665 72 FRKQIIDYFIDEYMSGHTPVPCTLCNNYLKWPLLAKIADEMGIFYLATGHYVR 124 (360)
T ss_pred HHHHHHhhhhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccc
Confidence 22211 111111223433333333222 3456778889999999999985
|
|
| >PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.8e-08 Score=91.73 Aligned_cols=156 Identities=21% Similarity=0.307 Sum_probs=82.2
Q ss_pred eEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEe--ecCCCChHHHHHHHHHHhCC-CceEEEeCh-hHH----
Q 010213 228 FGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCV--GLEGSPDLKYAKEVADYLGT-VHHEFHFTV-QDG---- 299 (515)
Q Consensus 228 v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~--~~~~~~d~~~A~~va~~lg~-~~~~~~~~~-~~~---- 299 (515)
+.++||||+||+++++.+.+.. ..+.++++ |+....|.+.|+++++++|+ +|+++.++. .++
T Consensus 2 avvl~SGG~DSt~~l~~~~~~~----------~~v~al~~~YGq~~~~El~~a~~i~~~l~v~~~~~i~l~~~~~~~~s~ 71 (209)
T PF06508_consen 2 AVVLFSGGLDSTTCLYWAKKEG----------YEVYALTFDYGQRHRRELEAAKKIAKKLGVKEHEVIDLSFLKEIGGSA 71 (209)
T ss_dssp EEEE--SSHHHHHHHHHHHHH-----------SEEEEEEEESSSTTCHHHHHHHHHHHHCT-SEEEEEE-CHHHHCSCHH
T ss_pred EEEEeCCCHHHHHHHHHHHHcC----------CeEEEEEEECCCCCHHHHHHHHHHHHHhCCCCCEEeeHHHHHhhCCCc
Confidence 5689999999999999988764 46776666 44544589999999999999 999988872 111
Q ss_pred -HHH---HHHHHHhhccCCCC--cccchHHHHHHHHHHHhCCCeEEEeccCccccccCCccccCCCChHHHHHHHHHHHH
Q 010213 300 -IDA---IEEVIYHVETYDVT--TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKIK 373 (515)
Q Consensus 300 -~~~---l~~~~~~~e~~~~~--~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~~~~~~~~~~~~~~~~~~~~ 373 (515)
.+. +++.-...+..... ..+|.+.+-..+..|.+.|+..++.|.-+++ +.+|+..+ ..|.+.+.+-+.
T Consensus 72 L~~~~~~v~~~~~~~~~~~~t~vP~RN~l~lsiAa~~A~~~g~~~i~~G~~~~D-~~~ypDc~-----~~F~~~~~~~~~ 145 (209)
T PF06508_consen 72 LTDDSIEVPEEEYSEESIPSTYVPFRNGLFLSIAASYAESLGAEAIYIGVNAED-ASGYPDCR-----PEFIDAMNRLLN 145 (209)
T ss_dssp HHHTT------------------TTHHHHHHHHHHHHHHHHT-SEEEE---S-S-TT--GGGS-----HHHHHHHHHHHH
T ss_pred ccCCCcCCcccccccCCCCceEEecCcHHHHHHHHHHHHHCCCCEEEEEECcCc-cCCCCCCh-----HHHHHHHHHHHH
Confidence 110 11100000111111 1234444444556677889999999998877 67887643 233332222111
Q ss_pred hhcccccccccccccccCceeccCCCCH---HHHHHHHcCC
Q 010213 374 ALHQYDCLRANKSTSAWGLEARVPFLDK---DFINVAMAID 411 (515)
Q Consensus 374 ~l~~~~l~r~d~~~~~~g~e~r~PflD~---~lve~~~~lP 411 (515)
.. ....+.+..||++. ++++.+..+.
T Consensus 146 ~~------------~~~~v~i~~P~~~~tK~eiv~~~~~lg 174 (209)
T PF06508_consen 146 LG------------EGGPVRIETPLIDLTKAEIVKLGVELG 174 (209)
T ss_dssp HH------------HTS--EEE-TTTT--HHHHHHHHHHTT
T ss_pred hc------------CCCCEEEEecCCCCCHHHHHHHHHHcC
Confidence 11 23468899999884 5666666554
|
In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A. |
| >COG0603 Predicted PP-loop superfamily ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.5e-08 Score=93.73 Aligned_cols=118 Identities=28% Similarity=0.381 Sum_probs=78.7
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEe--ecCCCChHHHHHHHHHHhCCCceEEEeChhHHH--HH
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCV--GLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGI--DA 302 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~--~~~~~~d~~~A~~va~~lg~~~~~~~~~~~~~~--~~ 302 (515)
+..|.||||+||+++++.|.+.. ..+++.|+ |....-|.+.|+++|+.+|++|+++.++.-.-+ ..
T Consensus 4 kavvl~SGG~DStt~l~~a~~~~----------~ev~alsfdYGQrh~~Ele~A~~iak~lgv~~~iid~~~~~~~~~sa 73 (222)
T COG0603 4 KAVVLLSGGLDSTTCLAWAKKEG----------YEVHALTFDYGQRHRKELEAAKELAKKLGVPHHIIDVDLLGEIGGSA 73 (222)
T ss_pred eEEEEccCChhHHHHHHHHHhcC----------CEEEEEEeeCCCCcHHHHHHHHHHHHHcCCCeEEechhHHhhcCCCc
Confidence 35689999999999999998865 46766665 555567999999999999999998876532101 00
Q ss_pred HH-H---HHH-h--hccCCCC--cccchHHHHHHHHHHHhCCCeEEEeccCccccccCCccc
Q 010213 303 IE-E---VIY-H--VETYDVT--TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 355 (515)
Q Consensus 303 l~-~---~~~-~--~e~~~~~--~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~~ 355 (515)
+. + +.. . .++.... ..+|.+.+.+.+-.|...|++.+++|-.+.+ |.|||..
T Consensus 74 Ltd~~~~vp~~~~~~~~~p~t~VP~RN~iflsiA~~~Ae~~g~~~I~~Gv~~~D-~sgYPDc 134 (222)
T COG0603 74 LTDDSIDVPKYEFAEEEIPATFVPARNLIFLSIAAAYAEALGADAIIIGVNEED-FSGYPDC 134 (222)
T ss_pred CcCCCccccccccccccCcceEeccccHHHHHHHHHHHHHcCCCeEEEEecccc-cCCCCCC
Confidence 00 0 000 0 0101111 1234555556667788899999999999877 6678764
|
|
| >PRK11106 queuosine biosynthesis protein QueC; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.2e-08 Score=93.12 Aligned_cols=154 Identities=19% Similarity=0.237 Sum_probs=92.1
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--CChHHHHHHHHHHhCCC-ceEEEeChhHHH--H
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGTV-HHEFHFTVQDGI--D 301 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--~~d~~~A~~va~~lg~~-~~~~~~~~~~~~--~ 301 (515)
++.|++|||+||+++++++.+.. .++.++|+.+.. ..|.+.|+++|+++|++ |+++.++.-..+ .
T Consensus 3 kvvVl~SGG~DSt~~l~~a~~~~----------~~v~alt~dygq~~~~El~~a~~ia~~~gi~~h~vid~~~l~~l~~s 72 (231)
T PRK11106 3 RAVVVFSGGQDSTTCLIQALQQY----------DEVHCVTFDYGQRHRAEIDVARELALKLGARAHKVLDVTLLNELAVS 72 (231)
T ss_pred cEEEEeeCcHHHHHHHHHHHhcC----------CeEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc
Confidence 57899999999999999886542 367777776543 45899999999999996 888776531100 0
Q ss_pred HHHHH-H--H--hh--ccCCCCcc--cchHHHHHHHHHHHhCCCeEEEeccCccccccCCccccCCCChHHHHHHHHHHH
Q 010213 302 AIEEV-I--Y--HV--ETYDVTTI--RASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKI 372 (515)
Q Consensus 302 ~l~~~-~--~--~~--e~~~~~~~--~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~~~~~~~~~~~~~~~~~~~ 372 (515)
.+.+. + . .. +.+....+ ++.+...+....|.+.|++.++.|-.+|+. ++|+.- +..|.+.+..-+
T Consensus 73 ~Lt~~~~~~p~~~~~~~~~~~~~vP~RN~lflslAa~~A~~~g~~~I~~G~n~~D~-~~YpDc-----r~~Fi~A~~~~~ 146 (231)
T PRK11106 73 SLTRDSIPVPDYEPEADGLPNTFVPGRNILFLTLAAIYAYQVKAEAVITGVCETDF-SGYPDC-----RDEFVKALNHAV 146 (231)
T ss_pred ccccccccCCccccccCCCCCEEEecHHHHHHHHHHHHHHHcCCCEEEEeeccCcC-CCCCCC-----CHHHHHHHHHHH
Confidence 11000 0 0 00 00111111 222222233346788999999999999884 677642 344443322211
Q ss_pred HhhcccccccccccccccCceeccCCCCH---HHHHHHH
Q 010213 373 KALHQYDCLRANKSTSAWGLEARVPFLDK---DFINVAM 408 (515)
Q Consensus 373 ~~l~~~~l~r~d~~~~~~g~e~r~PflD~---~lve~~~ 408 (515)
+ .++..++.+..||++. ++++.+.
T Consensus 147 ~------------~~~~~~i~I~aPl~~lsK~eI~~l~~ 173 (231)
T PRK11106 147 S------------LGMAKDIRFETPLMWLNKAETWALAD 173 (231)
T ss_pred H------------hccCCCcEEEecCCCCCHHHHHHHHH
Confidence 1 1122358899999872 4455544
|
|
| >PRK04527 argininosuccinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.3e-08 Score=98.31 Aligned_cols=113 Identities=15% Similarity=0.209 Sum_probs=77.5
Q ss_pred ccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--CChHHHHHHHHHHhCC-CceEEEeChhHHHH
Q 010213 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGT-VHHEFHFTVQDGID 301 (515)
Q Consensus 225 ~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--~~d~~~A~~va~~lg~-~~~~~~~~~~~~~~ 301 (515)
..++.+++|||+|||+++.++.+. |.++.++++.... ..|.+.|+++|+.+|+ +|+++.+..+...+
T Consensus 2 ~~kVvVA~SGGvDSSvla~~l~e~----------G~~Viavt~d~gq~~~~El~~a~~~A~~lG~~~~~viD~~eef~e~ 71 (400)
T PRK04527 2 SKDIVLAFSGGLDTSFCIPYLQER----------GYAVHTVFADTGGVDAEERDFIEKRAAELGAASHVTVDGGPAIWEG 71 (400)
T ss_pred CCcEEEEEcCChHHHHHHHHHHHc----------CCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEecCHHHHHHH
Confidence 357899999999999999998874 2578899886554 4688999999999998 58888776543333
Q ss_pred HHHHHH-----HhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccC--cccc
Q 010213 302 AIEEVI-----YHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEG--SDEI 348 (515)
Q Consensus 302 ~l~~~~-----~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~G--gDel 348 (515)
.+..++ +....|.+++ ......-.+.+.|++.|++.+.+|.. ||..
T Consensus 72 vi~p~i~aNa~y~G~yPl~~~-nR~~~~~~l~e~A~~~G~~~IA~G~tgkgnDq 124 (400)
T PRK04527 72 FVKPLVWAGEGYQGQYPLLVS-DRYLIVDAALKRAEELGTRIIAHGCTGMGNDQ 124 (400)
T ss_pred HHHHHHhcchhhcCCCCCccc-cHHHHHHHHHHHHHHCCCCEEEecCcCCCCch
Confidence 333222 2222343322 11122224667788999999999995 4543
|
|
| >PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.1e-07 Score=96.21 Aligned_cols=113 Identities=16% Similarity=0.136 Sum_probs=79.1
Q ss_pred cccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCChHHHHHHHHHHhCCCceEEEeChhHH---H
Q 010213 224 TDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDG---I 300 (515)
Q Consensus 224 ~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg~~~~~~~~~~~~~---~ 300 (515)
...+|.+.+|||+||+++++++++. +..+.++++... ..|...|+++|+++|++|+.+.++.+.. +
T Consensus 4 ~~~kVlVa~SGGvDSsv~a~lL~~~----------G~eV~av~~~~~-~~e~~~a~~va~~LGI~~~vvd~~~~f~~~v~ 72 (362)
T PRK14664 4 SKKRVLVGMSGGIDSTATCLMLQEQ----------GYEIVGVTMRVW-GDEPQDARELAARMGIEHYVADERVPFKDTIV 72 (362)
T ss_pred CCCEEEEEEeCCHHHHHHHHHHHHc----------CCcEEEEEecCc-chhHHHHHHHHHHhCCCEEEEeChHHHHHHHH
Confidence 3457999999999999999988764 357888887543 3466789999999999999988764322 2
Q ss_pred HHHHHHHHhhccCCCCcccchHH-HHHHHHHHHhCCCeEEEeccCccc
Q 010213 301 DAIEEVIYHVETYDVTTIRASTP-MFLMSRKIKSLGVKMVISGEGSDE 347 (515)
Q Consensus 301 ~~l~~~~~~~e~~~~~~~~~~~~-~~~l~~~a~~~g~~vlltG~GgDe 347 (515)
+.+.+......+|+++..++... ...+.+.|.+.|+..+.||+.++-
T Consensus 73 ~~~~~~~~~G~tpnpC~~Cn~~iKf~~L~~~A~~~G~~~IATGHyar~ 120 (362)
T PRK14664 73 KNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGCAWIATGHYSRL 120 (362)
T ss_pred HHhHHHHHcCCCCCCchhhhHHHHHHHHHHHHHHcCCCEEEECCcccc
Confidence 21112222223455554444333 234678888999999999999964
|
|
| >TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.2e-07 Score=96.10 Aligned_cols=109 Identities=19% Similarity=0.171 Sum_probs=74.4
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeec-------C-----CCChHHHHHHHHHHhCCCceEEEe
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL-------E-----GSPDLKYAKEVADYLGTVHHEFHF 294 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~-------~-----~~~d~~~A~~va~~lg~~~~~~~~ 294 (515)
+|.+++|||+||+++++++.+.. .++.++++.. . ...|.+.|+++|+++|++|+.+.+
T Consensus 2 kVlValSGGvDSsv~a~lL~~~G----------~~V~~v~~~~~~~~~~~~~~~c~~~~~~~~a~~va~~lgIp~~vid~ 71 (352)
T TIGR00420 2 KVIVGLSGGVDSSVSAYLLKQQG----------YEVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQAICEKLGIPLEKVNF 71 (352)
T ss_pred eEEEEEeCCHHHHHHHHHHHHcC----------CeEEEEEEEcccccccccccCcCCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 57899999999999999998753 5788888731 1 113678899999999999998887
Q ss_pred ChhHHHHHHHHHH---HhhccCCCCcccchHH-HHHHHHHHHhC-CCeEEEeccCc
Q 010213 295 TVQDGIDAIEEVI---YHVETYDVTTIRASTP-MFLMSRKIKSL-GVKMVISGEGS 345 (515)
Q Consensus 295 ~~~~~~~~l~~~~---~~~e~~~~~~~~~~~~-~~~l~~~a~~~-g~~vlltG~Gg 345 (515)
+.+...+.+...+ ....+|+++..++... +..+.+.|.+. |++.+.||+.+
T Consensus 72 ~~~f~~~v~~~~~~~y~~g~tpnpC~~Cnr~iKf~~l~~~a~~~~G~~~IATGHya 127 (352)
T TIGR00420 72 QKEYWNKVFEPFIQEYKEGRTPNPDILCNKFIKFGAFLEYAAELLGNDKIATGHYA 127 (352)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcchhhhHHHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 5432222222222 1223455444443333 23556777776 99999999999
|
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea. |
| >PRK00509 argininosuccinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.3e-07 Score=96.50 Aligned_cols=110 Identities=16% Similarity=0.138 Sum_probs=75.6
Q ss_pred cceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCChHHHHHHHHHHhCCCc-eEEEeChhHHHH-HH
Q 010213 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVH-HEFHFTVQDGID-AI 303 (515)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg~~~-~~~~~~~~~~~~-~l 303 (515)
.+|.+++|||+||++++.++.+.. |.++.++++......|.+.|+++|+.+|+.+ +.+.+. +++.+ .+
T Consensus 3 ~kVvva~SGGlDSsvla~~l~e~l---------G~eViavt~d~Gq~~dle~a~~~A~~lGi~~~~viD~~-~ef~~~~i 72 (399)
T PRK00509 3 KKVVLAYSGGLDTSVIIKWLKETY---------GCEVIAFTADVGQGEELEPIREKALKSGASEIYVEDLR-EEFVRDYV 72 (399)
T ss_pred CeEEEEEcCCHHHHHHHHHHHHhh---------CCeEEEEEEecCCHHHHHHHHHHHHHcCCCeEEEEcCH-HHHHHHhH
Confidence 368999999999999999998753 2579999987766578999999999999854 444543 23322 22
Q ss_pred HHHH-----HhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCc
Q 010213 304 EEVI-----YHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGS 345 (515)
Q Consensus 304 ~~~~-----~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~Gg 345 (515)
...+ +....|.++.++.....-.+.+.|++.|++++.+|..+
T Consensus 73 ~~~i~~n~~y~g~ypl~~~lcr~~i~~~l~~~A~~~G~~~IA~G~t~ 119 (399)
T PRK00509 73 FPAIRANALYEGKYPLGTALARPLIAKKLVEIARKEGADAVAHGCTG 119 (399)
T ss_pred HHHHHhChHhcCcCCCchHHHHHHHHHHHHHHHHHcCCCEEEeCCCc
Confidence 2222 22233443333333333346677889999999999987
|
|
| >TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.8e-07 Score=93.11 Aligned_cols=118 Identities=19% Similarity=0.233 Sum_probs=74.8
Q ss_pred HHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC--CCChHHHHHHHH-HHhCCCceEE
Q 010213 216 NAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVA-DYLGTVHHEF 292 (515)
Q Consensus 216 ~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~--~~~d~~~A~~va-~~lg~~~~~~ 292 (515)
+.++..+.. .++.+++|||+||+++++++.+.. |.++.++++... ...|.+.+.+.+ +++|++|+.+
T Consensus 8 ~~l~~~v~~-~kVvValSGGVDSsvla~ll~~~~---------G~~v~av~vd~G~~~~~E~e~~~~~~~~~lgi~~~vv 77 (311)
T TIGR00884 8 EEIREQVGD-AKVIIALSGGVDSSVAAVLAHRAI---------GDRLTCVFVDHGLLRKGEAEQVVKTFGDRLGLNLVYV 77 (311)
T ss_pred HHHHHHhCC-CcEEEEecCChHHHHHHHHHHHHh---------CCCEEEEEEeCCCCChHHHHHHHHHHHHHcCCcEEEE
Confidence 333444443 679999999999999999998865 357888887543 345777776654 5899999988
Q ss_pred EeChhHHHHHHHHHHHhhccCCC-CcccchHHHHHHHHHHHhCC-CeEEEeccCcccc
Q 010213 293 HFTVQDGIDAIEEVIYHVETYDV-TTIRASTPMFLMSRKIKSLG-VKMVISGEGSDEI 348 (515)
Q Consensus 293 ~~~~~~~~~~l~~~~~~~e~~~~-~~~~~~~~~~~l~~~a~~~g-~~vlltG~GgDel 348 (515)
..+.. +...+.. ...+.. ..+........+.+.|++.| ++.+++|+..|.+
T Consensus 78 d~~e~-fl~~l~~----v~~p~~~r~~~~~~~~~~~~~~A~~~g~~~~la~Gt~~dD~ 130 (311)
T TIGR00884 78 DAKER-FLSALKG----VTDPEEKRKIIGRVFIEVFEREAKKIGDAEYLAQGTIYPDV 130 (311)
T ss_pred eCcHH-HHhhhcC----CCChHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCChhh
Confidence 77532 2222211 111100 00111111234556677888 9999999998875
|
This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit |
| >cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.2e-07 Score=85.30 Aligned_cols=109 Identities=14% Similarity=0.090 Sum_probs=66.0
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--CCh----HHHHHHHHHHhCCCceEEEeChhHHH
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPD----LKYAKEVADYLGTVHHEFHFTVQDGI 300 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--~~d----~~~A~~va~~lg~~~~~~~~~~~~~~ 300 (515)
++.++||||+||++++.++.+.. .++.++++.... ..| ...+.+.+..++.+|+...++..+.
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~~g----------~~v~av~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~- 69 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMKRG----------IEVDALHFNSGPFTSEKAREKVEDLARKLARYSPGHKLVVIIFTFF- 69 (177)
T ss_pred CEEEEecCChhHHHHHHHHHHcC----------CeEEEEEEeCCCCCchHHHHHHHHHHHHHHHhCCCCceEEEeCcHH-
Confidence 36899999999999999998752 567777775432 222 3344445566787776544443321
Q ss_pred HHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccc
Q 010213 301 DAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 347 (515)
Q Consensus 301 ~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDe 347 (515)
..........++..+..........+.+.|.+.|++++++|+.+|.
T Consensus 70 -~~~~~~~~~~~~~~c~~Cr~~~~~~~~~~A~~~g~~~I~~G~~~~D 115 (177)
T cd01712 70 -VQKEIYGYGKEKYRCILCKRMMYRIAEKLAEELGADAIVTGESLGQ 115 (177)
T ss_pred -HHHHHHHhCCCccHhHHHHHHHHHHHHHHHHHcCCCEEEEccCccc
Confidence 1112222222333222222223345567788899999999998776
|
It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide. |
| >PTZ00323 NAD+ synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.9e-07 Score=88.88 Aligned_cols=141 Identities=16% Similarity=0.161 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHhhcc--ccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC-CCChHHHHHHHHHHh
Q 010213 209 VLRQAFENAVIKRLMT--DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPDLKYAKEVADYL 285 (515)
Q Consensus 209 ~l~~~l~~aV~~rl~~--~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~-~~~d~~~A~~va~~l 285 (515)
++-+...+.++.+++. ...+.+.||||+||+++++++.+.+...+. ....+.++..... ...+...|+.+|+.+
T Consensus 28 ~~i~~~~~~L~~~l~~~g~~~vVVglSGGVDSav~aaLa~~alg~~~~---~~~~~~~v~~P~~ss~~~~~~A~~la~~l 104 (294)
T PTZ00323 28 AWIEKKCAKLNEYMRRCGLKGCVTSVSGGIDSAVVLALCARAMRMPNS---PIQKNVGLCQPIHSSAWALNRGRENIQAC 104 (294)
T ss_pred HHHHHHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHHHhccccC---CceEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3334444555555544 567889999999999999999987643110 0012334443322 225778999999999
Q ss_pred CCCceEEEeChhHHHHHHHHHHHhhccCCC-----Cccc---chHHHHHHHHHHHhCCCeEEEecc-Ccccc-ccCCcc
Q 010213 286 GTVHHEFHFTVQDGIDAIEEVIYHVETYDV-----TTIR---ASTPMFLMSRKIKSLGVKMVISGE-GSDEI-FGGYLY 354 (515)
Q Consensus 286 g~~~~~~~~~~~~~~~~l~~~~~~~e~~~~-----~~~~---~~~~~~~l~~~a~~~g~~vlltG~-GgDel-f~Gy~~ 354 (515)
|++|+++.+++ ..+.+...+........ .... .....|.+++.+.+.|...++.|- ..||. .-||..
T Consensus 105 Gi~~~~idi~~--l~~~~~~~i~~~~~~~~~~~~~~n~~ar~R~~~lY~la~~~~~~g~~~lV~GT~N~sE~~~~Gy~t 181 (294)
T PTZ00323 105 GATEVTVDQTE--IHTQLSSLVEKAVGIKGGAFARGQLRSYMRTPVAFYVAQLLSQEGTPAVVMGTGNFDEDGYLGYFC 181 (294)
T ss_pred CCcEEEEECcH--HHHHHHHHHhhhhcccchhhHHHhHHHHHHhHHHHHHHHHHhhcCCCeEEECCCCchhhhHhchHh
Confidence 99999988874 23332222211100000 0011 012246677777777888888888 78885 357754
|
|
| >PRK00919 GMP synthase subunit B; Validated | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.6e-07 Score=91.29 Aligned_cols=123 Identities=18% Similarity=0.185 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--CChHHHHHHHHHHhCC
Q 010213 210 LRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGT 287 (515)
Q Consensus 210 l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--~~d~~~A~~va~~lg~ 287 (515)
+.+...+.++..+.. .++.+++|||+||+++++++.+.. |.++.++++.... ..|.+.++++|+.+ +
T Consensus 7 ~~~~~~~~l~~~~~~-~kVlVa~SGGVDSsvla~la~~~l---------G~~v~aV~vD~G~~~~~E~e~a~~~~~~~-i 75 (307)
T PRK00919 7 FIEEAIEEIREEIGD-GKAIIALSGGVDSSVAAVLAHRAI---------GDRLTPVFVDTGLMRKGETERIKETFSDM-L 75 (307)
T ss_pred HHHHHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHHh---------CCeEEEEEEECCCCCHHHHHHHHHHHhcc-C
Confidence 333334455556655 789999999999999999998864 3578888886543 45889999999887 8
Q ss_pred CceEEEeChhHHHHHHHHHHHhhccCC-CCcccchHHHHHHHHHHHhCCCeEEEeccCcccc
Q 010213 288 VHHEFHFTVQDGIDAIEEVIYHVETYD-VTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (515)
Q Consensus 288 ~~~~~~~~~~~~~~~l~~~~~~~e~~~-~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDel 348 (515)
+|+.+..+.. +.+.+.. ...+. ...+........+.+.|++.|++.+++|...|.+
T Consensus 76 ~~~vvd~~e~-fl~~L~~----v~npe~rr~~c~r~~~~~~~~~A~~~g~~~Ia~Gtn~dD~ 132 (307)
T PRK00919 76 NLRIVDAKDR-FLDALKG----VTDPEEKRKIIGETFIRVFEEVAKEIGAEYLVQGTIAPDW 132 (307)
T ss_pred CcEEEECCHH-HHHhccC----CCChHHhhhHHHHHHHHHHHHHHHHcCCCEEEECCCCcch
Confidence 8888776532 2232221 11111 0001111122345567888999999999998875
|
|
| >PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6 | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.5e-07 Score=88.96 Aligned_cols=134 Identities=22% Similarity=0.231 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCC--ChHHHHHHHHHHh
Q 010213 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS--PDLKYAKEVADYL 285 (515)
Q Consensus 208 ~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~--~d~~~A~~va~~l 285 (515)
+++.+.|++-+++. ....+.+.||||+||+++|+++.+.+.. .++.++.+....+ .+...|+.+|+.+
T Consensus 3 ~~l~~~L~~~~~~~--g~~~vVvglSGGiDSav~A~La~~Alg~--------~~v~~v~mp~~~~~~~~~~~A~~la~~l 72 (242)
T PF02540_consen 3 EALVDFLRDYVKKS--GAKGVVVGLSGGIDSAVVAALAVKALGP--------DNVLAVIMPSGFSSEEDIEDAKELAEKL 72 (242)
T ss_dssp HHHHHHHHHHHHHH--TTSEEEEEETSSHHHHHHHHHHHHHHGG--------GEEEEEEEESSTSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCeEEEEcCCCCCHHHHHHHHHHHhhh--------ccccccccccccCChHHHHHHHHHHHHh
Confidence 34455555555543 2356778999999999999999988732 3688888864333 3678899999999
Q ss_pred CCCceEEEeChhHHHHHHHHHHHhhc-cCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccccCCcc
Q 010213 286 GTVHHEFHFTVQDGIDAIEEVIYHVE-TYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (515)
Q Consensus 286 g~~~~~~~~~~~~~~~~l~~~~~~~e-~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~ 354 (515)
|+++..+++++ ..+.+.+.+.... ......+.....+-.++..+...+. +++....-+|...||..
T Consensus 73 gi~~~~i~i~~--~~~~~~~~~~~~~~~~~~~Ni~aR~Rm~~ly~~a~~~~~-lVlgT~N~sE~~~Gy~T 139 (242)
T PF02540_consen 73 GIEYIVIDIDP--IFDAFLKSLEPADDDLARGNIQARIRMTTLYALANKYNY-LVLGTGNKSELLLGYFT 139 (242)
T ss_dssp TSEEEEEESHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTE-EEBE--CHHHHHHTCSH
T ss_pred CCCeeccchHH--HHHHHhhhhccchhhhhhhhHHHHHHHHHHHHHhcccce-EEecCCcHHHhhcCccc
Confidence 99999988753 3333333221111 0100111222333344444555554 44444456788888864
|
3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C .... |
| >PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.5e-07 Score=87.31 Aligned_cols=133 Identities=19% Similarity=0.139 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHh--hccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC-CChHHHHHHHHHH
Q 010213 208 LVLRQAFENAVIKR--LMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-SPDLKYAKEVADY 284 (515)
Q Consensus 208 ~~l~~~l~~aV~~r--l~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~-~~d~~~A~~va~~ 284 (515)
+.+...+.+++++. +....+|.|++|||.||++++.++.+...... ++..+.++++.... ..+.+.++++|+.
T Consensus 10 ~~~~~~v~~~i~~~~li~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~----~~~~l~av~vd~g~~~~~~~~~~~~~~~ 85 (258)
T PRK10696 10 KRLRRQVGQAIADFNMIEEGDRVMVCLSGGKDSYTLLDILLNLQKRAP----INFELVAVNLDQKQPGFPEHVLPEYLES 85 (258)
T ss_pred HHHHHHHHHHHHHcCCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhCC----CCeEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 45666777777764 24456899999999999999999977532110 01356777764322 2344578999999
Q ss_pred hCCCceEEEeChhHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccc
Q 010213 285 LGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIF 349 (515)
Q Consensus 285 lg~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf 349 (515)
+|++++++.++..... .... .+...............+.+.|.+.|++++++|+-+|+..
T Consensus 86 lgI~~~v~~~~~~~~~---~~~~--~~~~~~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~dD~~ 145 (258)
T PRK10696 86 LGVPYHIEEQDTYSIV---KEKI--PEGKTTCSLCSRLRRGILYRTARELGATKIALGHHRDDIL 145 (258)
T ss_pred hCCCEEEEEecchhhh---hhhh--ccCCChhHHHHHHHHHHHHHHHHHcCCCEEEEcCchHHHH
Confidence 9999998775432211 1101 0111111111112234566788899999999999999754
|
|
| >TIGR00364 exsB protein | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.8e-07 Score=86.43 Aligned_cols=115 Identities=23% Similarity=0.342 Sum_probs=73.9
Q ss_pred EEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--CChHHHHHHHHHHhCCCceEEEeChhHHHH--HHH
Q 010213 229 GVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGTVHHEFHFTVQDGID--AIE 304 (515)
Q Consensus 229 ~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--~~d~~~A~~va~~lg~~~~~~~~~~~~~~~--~l~ 304 (515)
.++||||+||+++++++.+.. .++.++++.+.. ..|.+.|+++|+.+|++|+++.++.-..+. .+.
T Consensus 2 vv~lSGG~DSs~~~~~~~~~g----------~~v~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~~~~~~~~~~~~~~~~ 71 (201)
T TIGR00364 2 VVVLSGGQDSTTCLAIAKDEG----------YEVHAITFDYGQRHSRELESARKIAEALGIEHHVIDLSLLKQLGGSALT 71 (201)
T ss_pred EEEeccHHHHHHHHHHHHHcC----------CcEEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEechhhccccccccc
Confidence 589999999999999987642 578888887543 357889999999999999988775311100 000
Q ss_pred H---HHH-hhccC---CCC--cccchHHHHHHHHHHHhCCCeEEEeccCccccccCCcc
Q 010213 305 E---VIY-HVETY---DVT--TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (515)
Q Consensus 305 ~---~~~-~~e~~---~~~--~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~ 354 (515)
+ ... ..... ... ..++.+.+-.+...|.+.|+..+++|...|++ +.|+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~A~~~g~~~v~~G~~~~d~-~~~~d 129 (201)
T TIGR00364 72 DESEIPPQKSNEEDTLPNTFVPGRNAIFLSIAASYAEALGAEAVITGVCETDF-SGYPD 129 (201)
T ss_pred CCCCCCCcCccccCCCCCeeecCCcHHHHHHHHHHHHHCCCCEEEEEeccCcC-CCCCC
Confidence 0 000 00000 000 01122222345677889999999999999985 56653
|
This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown. |
| >PRK08349 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.3e-07 Score=83.82 Aligned_cols=111 Identities=14% Similarity=0.097 Sum_probs=66.1
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCChHHHHHHHHHHhC----CCce-EEEeChhHH-H
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLG----TVHH-EFHFTVQDG-I 300 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg----~~~~-~~~~~~~~~-~ 300 (515)
++.+++|||+||++.+.++.+.. .++.++++.. +..+...++++|++++ ++|+ .+.++..+. .
T Consensus 2 ~~vvllSGG~DS~v~~~~l~~~g----------~~v~av~~d~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 70 (198)
T PRK08349 2 KAVALLSSGIDSPVAIYLMLRRG----------VEVYPVHFRQ-DEKKEEKVRELVERLQELHGGKLKDPVVVDAFEEQG 70 (198)
T ss_pred cEEEEccCChhHHHHHHHHHHcC----------CeEEEEEEeC-CHHHHHHHHHHHHHHHHhcCCCcceEEEEcchHHhH
Confidence 46789999999999999887643 5788888876 3356666777777664 7764 233332221 1
Q ss_pred HHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCcccc
Q 010213 301 DAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (515)
Q Consensus 301 ~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDel 348 (515)
..+..+......+..+.....+....+.+.|.+.|++.++||+..|+.
T Consensus 71 ~~~~~~~~~~~~~~~c~~cr~~~~~~a~~~A~~~g~~~I~tG~~~~d~ 118 (198)
T PRK08349 71 PVFEKLRELKKEKWTCIFCKYTMYRKAERIAHEIGASAIITGDSLGQV 118 (198)
T ss_pred HHHHHHHhhCCCCCchHHHHHHHHHHHHHHHHHcCCCEEEEecCCchH
Confidence 112211111111211111122233456677889999999999766553
|
|
| >PRK13981 NAD synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=9.3e-07 Score=95.55 Aligned_cols=138 Identities=20% Similarity=0.211 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHhhcc--ccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCC--ChHHHHHHHH
Q 010213 207 PLVLRQAFENAVIKRLMT--DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS--PDLKYAKEVA 282 (515)
Q Consensus 207 ~~~l~~~l~~aV~~rl~~--~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~--~d~~~A~~va 282 (515)
.+++.+.+...++.++.. ...+.+.||||+||+++++++.+.+.. .+++++++....+ .+...|+++|
T Consensus 260 ~~~~~~~l~~~l~~~~~~~~~~~~vvglSGGiDSa~~a~la~~a~g~--------~~v~~~~~p~~~~~~~~~~~a~~~a 331 (540)
T PRK13981 260 EAEDYRALVLGLRDYVRKNGFPGVVLGLSGGIDSALVAAIAVDALGA--------ERVRAVMMPSRYTSEESLDDAAALA 331 (540)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHhCc--------CcEEEEECCCCCCCHHHHHHHHHHH
Confidence 455666666666666644 356889999999999999999887621 3688888875543 4678899999
Q ss_pred HHhCCCceEEEeChhHHHHHHHHHHHhh---ccCCCC--cccchHHHHHHHHHHHhCCCeEEEeccCccccccCCccc
Q 010213 283 DYLGTVHHEFHFTVQDGIDAIEEVIYHV---ETYDVT--TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 355 (515)
Q Consensus 283 ~~lg~~~~~~~~~~~~~~~~l~~~~~~~---e~~~~~--~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~~ 355 (515)
+.+|++|+++.+++ ..+.+...+... +..+.. .+.+.+.+..++..|.+.|.-|+=||.- +|+.-||...
T Consensus 332 ~~lgi~~~~i~i~~--~~~~~~~~~~~~~~~~~~~~~~~N~~ar~R~~~l~~~a~~~~~lvlgt~n~-sE~~~Gy~t~ 406 (540)
T PRK13981 332 KNLGVRYDIIPIEP--AFEAFEAALAPLFAGTEPDITEENLQSRIRGTLLMALSNKFGSLVLTTGNK-SEMAVGYATL 406 (540)
T ss_pred HHcCCeEEEEECHH--HHHHHHHHhhhhhcCCCCCchHHHHHHHHHHHHHHHHHhccCCEEEeCCcc-CHHHcCCeEe
Confidence 99999999988764 333333322111 111110 1112233445666677777767777754 4777888653
|
|
| >PRK13820 argininosuccinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.6e-07 Score=90.80 Aligned_cols=111 Identities=21% Similarity=0.216 Sum_probs=73.2
Q ss_pred cceEEeecCCcchHHHHHHHHHHhccccccccCCC-ceeeEEeecCC-CChHHHHHHHHHHhCCCceEEEeChhHHH-HH
Q 010213 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGT-QLHSFCVGLEG-SPDLKYAKEVADYLGTVHHEFHFTVQDGI-DA 302 (515)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~-~i~~~t~~~~~-~~d~~~A~~va~~lg~~~~~~~~~~~~~~-~~ 302 (515)
.+|.+++|||+||++++.++.+.. +. ++.++++.... ..|.+.++++|+.+|++++.+.+.+ ++. +.
T Consensus 3 ~kVvvA~SGGvDSsvll~lL~e~~---------g~~~Viav~vd~g~~~~e~~~a~~~a~~lGi~~~vvd~~e-ef~~~~ 72 (394)
T PRK13820 3 KKVVLAYSGGLDTSVCVPLLKEKY---------GYDEVITVTVDVGQPEEEIKEAEEKAKKLGDKHYTIDAKE-EFAKDY 72 (394)
T ss_pred CeEEEEEeCcHHHHHHHHHHHHhc---------CCCEEEEEEEECCCChHHHHHHHHHHHHcCCCEEEEeCHH-HHHHHH
Confidence 468999999999999999987653 23 78888886543 3588899999999999988877653 233 22
Q ss_pred HHHHHHhh---ccCCCCc-ccchHHHHHHHHHHHhCCCeEEEeccCcc
Q 010213 303 IEEVIYHV---ETYDVTT-IRASTPMFLMSRKIKSLGVKMVISGEGSD 346 (515)
Q Consensus 303 l~~~~~~~---e~~~~~~-~~~~~~~~~l~~~a~~~g~~vlltG~GgD 346 (515)
+...+... +.+..++ .......-.+.+.|++.|++++.+|+.++
T Consensus 73 i~~~i~~n~~~~gYpl~~~~cR~~i~~~l~e~A~e~G~~~IA~G~t~~ 120 (394)
T PRK13820 73 IFPAIKANALYEGYPLGTALARPLIAEKIVEVAEKEGASAIAHGCTGK 120 (394)
T ss_pred HHHHHHhCccccCCcCcHHHHHHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 22222211 1111111 11111122456778899999999999664
|
|
| >TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.6e-07 Score=83.04 Aligned_cols=108 Identities=12% Similarity=0.126 Sum_probs=71.2
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC--CC--ChHHHHHHHHHHhCCCceEEEeChhHHHHH
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GS--PDLKYAKEVADYLGTVHHEFHFTVQDGIDA 302 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~--~~--~d~~~A~~va~~lg~~~~~~~~~~~~~~~~ 302 (515)
+|.+.+|||.||++++.++.+..... +.++.++++... .. .+.+.++++|+.+|++++.+.++..+....
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~------~~~v~~v~vd~g~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~ 74 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKL------KIRLIAAHVDHGLRPESDEEAEFVQQFCKKLNIPLEIKKVDVKALAKG 74 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHc------CCCEEEEEeCCCCChhHHHHHHHHHHHHHHcCCCEEEEEecchhhccc
Confidence 47899999999999999998754221 235777776533 21 367889999999999999888754321100
Q ss_pred HHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCcccc
Q 010213 303 IEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (515)
Q Consensus 303 l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDel 348 (515)
. ...+. .......+..+.+.+++.|++++++|+-+|++
T Consensus 75 ---~---~~~~~--~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~D~ 112 (189)
T TIGR02432 75 ---K---KKNLE--EAAREARYDFFEEIAKKHGADYILTAHHADDQ 112 (189)
T ss_pred ---c---CCCHH--HHHHHHHHHHHHHHHHHcCCCEEEEcCccHHH
Confidence 0 00000 00011223356677888999999999999875
|
The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer). |
| >cd01999 Argininosuccinate_Synthase Argininosuccinate synthase | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.3e-06 Score=89.11 Aligned_cols=108 Identities=19% Similarity=0.186 Sum_probs=69.1
Q ss_pred eEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCCh-HHHHHHHHHHhCCC-ceEEEeChhHHHH-HHH
Q 010213 228 FGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPD-LKYAKEVADYLGTV-HHEFHFTVQDGID-AIE 304 (515)
Q Consensus 228 v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d-~~~A~~va~~lg~~-~~~~~~~~~~~~~-~l~ 304 (515)
|.+++|||+||++++.++.+.. +.++.++++......+ .+.|+++|+.+|++ |+++.+.. ++.+ .+.
T Consensus 1 Vvva~SGGlDSsvll~~l~e~~---------~~eV~av~~d~Gq~~~~~e~a~~~a~~lG~~~~~viD~~~-ef~~~~i~ 70 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKEKG---------GYEVIAVTADVGQPEEEIEAIEEKALKLGAKKHVVVDLRE-EFVEDYIF 70 (385)
T ss_pred CEEEecCCHHHHHHHHHHHHhC---------CCeEEEEEEECCCcchhHHHHHHHHHHcCCCEEEEeccHH-HHHHHhhH
Confidence 4689999999999999998764 2378999987654433 48999999999996 66655532 2332 222
Q ss_pred HHHHhhcc----CCC-CcccchHHHHHHHHHHHhCCCeEEEeccCc
Q 010213 305 EVIYHVET----YDV-TTIRASTPMFLMSRKIKSLGVKMVISGEGS 345 (515)
Q Consensus 305 ~~~~~~e~----~~~-~~~~~~~~~~~l~~~a~~~g~~vlltG~Gg 345 (515)
..+..... +.+ +.+......-.+.+.|++.|++++.+|..+
T Consensus 71 ~~i~an~~~~g~y~l~t~l~R~~i~~~l~~~A~~~Ga~~VA~G~t~ 116 (385)
T cd01999 71 PAIQANALYEGTYPLGTALARPLIAKALVEVAKEEGADAVAHGCTG 116 (385)
T ss_pred HHHHhCccccCCCcCCcHhHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 33322111 111 111111222244677889999999888765
|
The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity |
| >PRK00768 nadE NAD synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.6e-06 Score=83.78 Aligned_cols=143 Identities=14% Similarity=0.090 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHhhcc--ccceEEeecCCcchHHHHHHHHHHhccccccc-cCCCceeeEEeecCCCChHHHHHHHHHHh
Q 010213 209 VLRQAFENAVIKRLMT--DVPFGVLLSGGLDSSLVASITARHLAGTKAAR-QWGTQLHSFCVGLEGSPDLKYAKEVADYL 285 (515)
Q Consensus 209 ~l~~~l~~aV~~rl~~--~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~-~~~~~i~~~t~~~~~~~d~~~A~~va~~l 285 (515)
+..+.+.+.++.++.. ...+.+-||||+||+++++++.+.....+.++ .....+.++...+....+...|+.+|+.+
T Consensus 20 ~~~~~i~~~L~~~l~~~g~~g~VlGlSGGIDSav~a~L~~~A~~~~~~~~~~~~~~~~~l~mP~~~~~~~~da~~la~~l 99 (268)
T PRK00768 20 EEIRRRVDFLKDYLKKSGLKSLVLGISGGQDSTLAGRLAQLAVEELRAETGDDDYQFIAVRLPYGVQADEDDAQDALAFI 99 (268)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHHHHhcccccCcceeEEEEECCCCCcCCHHHHHHHHHhc
Confidence 3334444555555533 24567889999999999999888764321100 00011444444433345688999999999
Q ss_pred CC-CceEEEeChhHHHHHHHHHHHhhcc-CCC---CcccchHHHHHHHHHHHhCCCeEEEeccCccccccCCcc
Q 010213 286 GT-VHHEFHFTVQDGIDAIEEVIYHVET-YDV---TTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (515)
Q Consensus 286 g~-~~~~~~~~~~~~~~~l~~~~~~~e~-~~~---~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~ 354 (515)
|+ ++.++++++ ..+.+.+.+...+. ... ..+.+-..+-.++..|...|.-|+=||. -+|+.-||..
T Consensus 100 gi~~~~~i~I~~--~~~~~~~~l~~~~~~~~~~a~~NiqARlRm~~Ly~~An~~~~lvlgT~N-~sE~~~Gy~T 170 (268)
T PRK00768 100 QPDRVLTVNIKP--AVDASVAALEAAGIELSDFVKGNIKARERMIAQYAIAGATGGLVVGTDH-AAEAVTGFFT 170 (268)
T ss_pred CCCeeEEEECHH--HHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHccCCCEEEcCCc-ccHHHhCcee
Confidence 99 788877653 34444333221000 000 1112223444556666677766666664 5578888865
|
|
| >PLN00200 argininosuccinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.3e-06 Score=89.37 Aligned_cols=111 Identities=16% Similarity=0.154 Sum_probs=71.3
Q ss_pred cceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCC-ChHHHHHHHHHHhCCCceEEEeChhHHHHH-H
Q 010213 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS-PDLKYAKEVADYLGTVHHEFHFTVQDGIDA-I 303 (515)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~-~d~~~A~~va~~lg~~~~~~~~~~~~~~~~-l 303 (515)
.+|++++|||+||++++.++.+.. +.++.++++..... .|.+.|+++|+.+|++|+.+.--.+++.+. +
T Consensus 6 ~kVvva~SGGlDSsvla~~L~e~~---------G~eViav~id~Gq~~~el~~a~~~A~~lGi~~~~v~dl~~ef~~~~i 76 (404)
T PLN00200 6 NKVVLAYSGGLDTSVILKWLRENY---------GCEVVCFTADVGQGIEELEGLEAKAKASGAKQLVVKDLREEFVRDYI 76 (404)
T ss_pred CeEEEEEeCCHHHHHHHHHHHHhh---------CCeEEEEEEECCCChHHHHHHHHHHHHcCCCEEEEEeCHHHHHHhhc
Confidence 478999999999999999997753 25789999876544 588999999999999875543223333322 1
Q ss_pred HHHHHhhccCCCC---cccch--HHHHHHHHHHHhCCCeEEEeccCc
Q 010213 304 EEVIYHVETYDVT---TIRAS--TPMFLMSRKIKSLGVKMVISGEGS 345 (515)
Q Consensus 304 ~~~~~~~e~~~~~---~~~~~--~~~~~l~~~a~~~g~~vlltG~Gg 345 (515)
...+.....+... .-..+ ...-.+.+.|++.|++++.+|..|
T Consensus 77 ~p~i~~Na~ye~~Y~~~tsl~Rp~i~~~lv~~A~~~G~~~VahG~tg 123 (404)
T PLN00200 77 FPCLRANAIYEGKYLLGTSMARPLIAKAMVDIAKEVGADAVAHGATG 123 (404)
T ss_pred CHHHHcCCcccceeccccchhhHHHHHHHHHHHHHcCCCEEEeCCcC
Confidence 1222111111110 00011 122345677889999999888766
|
|
| >cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase | Back alignment and domain information |
|---|
Probab=98.44 E-value=7.5e-07 Score=87.87 Aligned_cols=108 Identities=19% Similarity=0.207 Sum_probs=71.6
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC--CCChHHHHHHHHHHhCC-CceEEEeChhHHHHHH
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVADYLGT-VHHEFHFTVQDGIDAI 303 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~--~~~d~~~A~~va~~lg~-~~~~~~~~~~~~~~~l 303 (515)
++.+++|||+||+++++++.+.. |.++.++++... ...|.+.++++|+.++. +|+.+..+.. +.+.+
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~l---------G~~v~aV~vd~g~~~~~E~~~~~~~~~~~g~i~~~vvd~~e~-fl~~l 70 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKAI---------GDRLTCVFVDNGLLRKNEAERVEELFSKLLGINLIVVDASER-FLSAL 70 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHHh---------CCcEEEEEecCCCCChHHHHHHHHHHHHhCCCcEEEEcCcHH-HHHHh
Confidence 36789999999999999999864 356888887543 24688899999998886 8888776532 22221
Q ss_pred HHHHHhhccCC-CCcccchHHHHHHHHHHHhCC-CeEEEeccCcccc
Q 010213 304 EEVIYHVETYD-VTTIRASTPMFLMSRKIKSLG-VKMVISGEGSDEI 348 (515)
Q Consensus 304 ~~~~~~~e~~~-~~~~~~~~~~~~l~~~a~~~g-~~vlltG~GgDel 348 (515)
.. ...+. ...+........+.+.|++.| ++.+++|+.+|.+
T Consensus 71 ~~----v~npe~rr~~~g~~~~~~l~~~A~~~g~~~~Ia~Gh~~dD~ 113 (295)
T cd01997 71 KG----VTDPEEKRKIIGETFIEVFEEEAKKLGLAEYLAQGTLYPDV 113 (295)
T ss_pred cC----CCCHHHHHHHhhHHHHHHHHHHHHHcCCCCEEEECCcccch
Confidence 11 10110 000001112234567788899 9999999999876
|
It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes. |
| >COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.2e-06 Score=87.47 Aligned_cols=125 Identities=18% Similarity=0.207 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEe--ecCC--CChHHHHHHHHHHh
Q 010213 210 LRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCV--GLEG--SPDLKYAKEVADYL 285 (515)
Q Consensus 210 l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~--~~~~--~~d~~~A~~va~~l 285 (515)
+...+.++++....-+.+|.|++|||.||++++.++.+.... ..+.++++ ++.. ..+...++.+|+.+
T Consensus 6 ~~~~v~~~i~~~~~~~~~ilVavSGGkDS~~ll~~L~~l~~~--------~~~~a~~Vd~~~~~~~~~~~~~~~~~~~~~ 77 (298)
T COG0037 6 LERKVKRAIREFNLIEYKILVAVSGGKDSLALLHLLKELGRR--------IEVEAVHVDHGLRGYSDQEAELVEKLCEKL 77 (298)
T ss_pred HHHHHHHHHHhccccCCeEEEEeCCChHHHHHHHHHHHhccC--------ceEEEEEecCCCCCccchHHHHHHHHHHHh
Confidence 444444444443221568999999999999999999987521 25666665 3433 35678889999999
Q ss_pred CCCceEEEeChhHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccc
Q 010213 286 GTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIF 349 (515)
Q Consensus 286 g~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf 349 (515)
++++++..++........+ ..............++.+.|.+.|+++++||+.+|...
T Consensus 78 ~~~~~v~~~~~~~~~~~~~-------~~~~c~~c~~~R~~~l~~~a~~~g~~~i~tgH~~dD~~ 134 (298)
T COG0037 78 GIPLIVERVTDDLGRETLD-------GKSICAACRRLRRGLLYKIAKELGADKIATGHHLDDQA 134 (298)
T ss_pred CCceEEEEEEeeccccccC-------CCChhHHHHHHHHHHHHHHHHHcCCCeEEeccCcHHHH
Confidence 9988777765432211110 00111111223345678889999999999999999754
|
|
| >cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.4e-06 Score=72.31 Aligned_cols=76 Identities=29% Similarity=0.296 Sum_probs=57.8
Q ss_pred eEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCChHHHHHHHHHHhCCCceEEEeChhHHHHHHHHHH
Q 010213 228 FGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVI 307 (515)
Q Consensus 228 v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~~~~ 307 (515)
+.+.+|||+||++++.++.+.. .++.++++.....+|...+++.++.
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 47 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKLG----------YQVIAVTVDHGISPRLEDAKEIAKE----------------------- 47 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHhC----------CCEEEEEEcCCCcccHHHHHHHHHH-----------------------
Confidence 4689999999999999998764 4677888765544566777777666
Q ss_pred HhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCcccccc
Q 010213 308 YHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFG 350 (515)
Q Consensus 308 ~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~ 350 (515)
.....+.+.+++.|++.+++|+..|.+..
T Consensus 48 --------------~r~~~~~~~a~~~g~~~i~~g~~~~D~~~ 76 (103)
T cd01986 48 --------------AREEAAKRIAKEKGAETIATGTRRDDVAN 76 (103)
T ss_pred --------------HHHHHHHHHHHHcCCCEEEEcCCcchHHH
Confidence 12335567788899999999999998653
|
The domain forms a apha/beta/apha fold which binds to Adenosine group.. |
| >PRK00074 guaA GMP synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.41 E-value=2e-06 Score=91.71 Aligned_cols=126 Identities=18% Similarity=0.181 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--CChHHHHHH-HHHH
Q 010213 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKE-VADY 284 (515)
Q Consensus 208 ~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--~~d~~~A~~-va~~ 284 (515)
+.+.+...+.+++.+.. .++.+++|||+||+++++++.+.. |.++.++++...- .+|...+.+ +|+.
T Consensus 199 ~~~~~~~~~~l~~~v~~-~~vlva~SGGvDS~vll~ll~~~l---------g~~v~av~vd~g~~~~~e~~~~~~~~a~~ 268 (511)
T PRK00074 199 ENFIEEAIEEIREQVGD-KKVILGLSGGVDSSVAAVLLHKAI---------GDQLTCVFVDHGLLRKNEAEQVMEMFREH 268 (511)
T ss_pred HHHHHHHHHHHHHhcCC-CcEEEEeCCCccHHHHHHHHHHHh---------CCceEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 34444444556666654 689999999999999999998875 2568888875432 356667765 6799
Q ss_pred hCCCceEEEeChhHHHHHHHHHHHhhccCC-CCcccchHHHHHHHHHHHhC-CCeEEEeccCcccc
Q 010213 285 LGTVHHEFHFTVQDGIDAIEEVIYHVETYD-VTTIRASTPMFLMSRKIKSL-GVKMVISGEGSDEI 348 (515)
Q Consensus 285 lg~~~~~~~~~~~~~~~~l~~~~~~~e~~~-~~~~~~~~~~~~l~~~a~~~-g~~vlltG~GgDel 348 (515)
+|++++.+.++.. +.+.+.. ...+. ...+........+.+.|++. |++.++||+..|.+
T Consensus 269 lgi~~~vvd~~~~-f~~~l~g----~~~~~~~r~~~~~~~~~~~~~~a~~~~g~~~latGhn~dD~ 329 (511)
T PRK00074 269 FGLNLIHVDASDR-FLSALAG----VTDPEEKRKIIGREFIEVFEEEAKKLGGVKFLAQGTLYPDV 329 (511)
T ss_pred cCCcEEEEccHHH-HHHhccC----CCCcHHhhhhhhHHHHHHHHHHHHHccCCCEEEECCCcchh
Confidence 9999998776432 2222111 11110 00111111223456778888 99999999988775
|
|
| >KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.35 E-value=3e-06 Score=81.02 Aligned_cols=118 Identities=20% Similarity=0.206 Sum_probs=79.4
Q ss_pred cceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEee----cC-------CCChHHHHHHHHHHhCCCceEEEe
Q 010213 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG----LE-------GSPDLKYAKEVADYLGTVHHEFHF 294 (515)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~----~~-------~~~d~~~A~~va~~lg~~~~~~~~ 294 (515)
.+|.|++|||+||++-|.++++.+ .++..+-+. ++ ...|...|+.||++++++.+.+++
T Consensus 6 ~~VvvamSgGVDSsVaa~Ll~~~g----------~~v~gv~M~nWd~~de~~s~cp~e~D~~da~~Vc~~LnI~~~~Vnf 75 (377)
T KOG2805|consen 6 DRVVVAMSGGVDSSVAARLLAARG----------YNVTGVFMKNWDSLDEFGSQCPAERDWKDAKRVCKQLNIPLHQVNF 75 (377)
T ss_pred ceEEEEecCCchHHHHHHHHHhcC----------CCeeEEeeeccccccccccCCCchhhHHHHHHHHHHhCCeeEEEee
Confidence 468899999999999999988764 566655542 11 125889999999999999999999
Q ss_pred ChhHHHHHHHHHHHhh---ccCCCCcccchHHHHH-HHHHH-HhCCCeEEEeccCccccccCCc
Q 010213 295 TVQDGIDAIEEVIYHV---ETYDVTTIRASTPMFL-MSRKI-KSLGVKMVISGEGSDEIFGGYL 353 (515)
Q Consensus 295 ~~~~~~~~l~~~~~~~---e~~~~~~~~~~~~~~~-l~~~a-~~~g~~vlltG~GgDelf~Gy~ 353 (515)
..+.+.+.+..++... -+|++...++-...+- +.+.| ...|.+-+.||+.|-.+++-+.
T Consensus 76 ~kEYW~~Vfs~~L~~Y~~G~TPNPDI~CN~~IKFg~~~~~a~en~~~d~latGHYAr~~~~~~~ 139 (377)
T KOG2805|consen 76 VKEYWNDVFSPFLEEYENGRTPNPDILCNKHIKFGKFFKHAIENLGYDWLATGHYARVVLEDED 139 (377)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCccccceeeccHHHHHHHHhcCCCeEEeeeeeeeecCccc
Confidence 8776666555554322 2344333333211121 22222 3458889999999987776554
|
|
| >cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.6e-06 Score=80.08 Aligned_cols=105 Identities=13% Similarity=0.149 Sum_probs=68.6
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--C--ChHHHHHHHHHHhCCCceEEEeChhHHHHH
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--S--PDLKYAKEVADYLGTVHHEFHFTVQDGIDA 302 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--~--~d~~~A~~va~~lg~~~~~~~~~~~~~~~~ 302 (515)
++.+++|||.||++++.++.+..... +.++.++++.... . .+...++++|+.+|++++.+......
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~------~~~v~~v~id~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---- 70 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRL------GLRLVAVHVDHGLRPESDEEAAFVADLCAKLGIPLYILVVALAP---- 70 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHc------CCcEEEEEecCCCCchHHHHHHHHHHHHHHcCCcEEEEeecccc----
Confidence 47899999999999999998865311 1367888875432 2 46788999999999998876211000
Q ss_pred HHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCcccc
Q 010213 303 IEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (515)
Q Consensus 303 l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDel 348 (515)
..........-......+.+.|.+.|++.+++|+-+|++
T Consensus 71 -------~~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~dD~ 109 (185)
T cd01992 71 -------KPGGNLEAAAREARYDFFAEIAKEHGADVLLTAHHADDQ 109 (185)
T ss_pred -------CCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcHHH
Confidence 000000000011222356677888999999999999874
|
This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus. |
| >PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices | Back alignment and domain information |
|---|
Probab=98.31 E-value=1e-05 Score=71.03 Aligned_cols=111 Identities=20% Similarity=0.370 Sum_probs=75.7
Q ss_pred cEEEEEeeEEcChHHHHHHhcCCC--ccCCChHHHHHHHHHHHHHhhhhccccceEEEEEECCCCEEEEEecCCCcceeE
Q 010213 69 KIVVTVNGEIYNHEALRERLTNHK--FRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLY 146 (515)
Q Consensus 69 ~~~~~~nGei~n~~~L~~~l~~~~--~~~~~D~e~i~~~~~~~G~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLy 146 (515)
+...-.-|.|||+.-|+.-...+. -..-+|+|++..++.+.|..++.-.+|+|+|.+=|++ ++|.+..|.-|..|+|
T Consensus 48 ~~tayLIGsiyNr~~L~~lag~~eg~a~v~nd~ElL~~~~~~lG~~aLsLAEGdfcffiE~kn-g~L~l~Tds~G~~pv~ 126 (201)
T PF09147_consen 48 RGTAYLIGSIYNRRFLRGLAGMWEGHAYVLNDAELLYTIFTRLGNSALSLAEGDFCFFIEDKN-GELTLITDSRGFNPVY 126 (201)
T ss_dssp TEEEEEES--S-HHHHHHHHTTT-GGGGG--HHHHHHHHHHHH-GGGGGG--SSEEEEEEETT-SEEEEEE-SSSSS-EE
T ss_pred CccEEEEEEeccHHHHHHhhheeeccceeeccHHHHHHHHHHhhhhhhhhhcCceEEEEecCC-CcEEEEecCCCCceEE
Confidence 345667899999988776552111 1245899999999999999999999999999998874 9999999999999999
Q ss_pred EEEecCcEEEEEcCccccccc--------------------------CCcceEeCCCeEEEe
Q 010213 147 IGWGLDGSIWISSELKGLNDD--------------------------CEHFEAFPPGHLYSS 182 (515)
Q Consensus 147 y~~~~~~~~~faSe~~~l~~~--------------------------~~~i~~l~pG~~~~~ 182 (515)
.-+ ++..++...+|-+-.. .+++.++.||++-.+
T Consensus 127 lV~--~~~~WiTn~LK~V~~~eg~~a~df~~E~~v~q~~l~~d~~sPi~na~RlkPGsin~l 186 (201)
T PF09147_consen 127 LVQ--SKFIWITNSLKLVSAVEGEGAFDFMPESLVIQSSLRPDNFSPIKNAQRLKPGSINVL 186 (201)
T ss_dssp EEE--SSSEEEES-HHHHHHHH-TTSS-B--HHHHSS-S---TT--SBTTEEEE-SSEEEEE
T ss_pred EEe--cCceEEecceEEEEEeeccccccccchhHHHhhhccCCCcCccccceecCCCceEEE
Confidence 875 3467777777654321 257889999998544
|
Their exact function has not, as yet, been determined []. ; PDB: 1Q19_A 1Q15_D. |
| >PLN02347 GMP synthetase | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.3e-06 Score=89.98 Aligned_cols=121 Identities=16% Similarity=0.201 Sum_probs=76.4
Q ss_pred HHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeec--CCCChHHHH-HHHHHHhCCCceEE
Q 010213 216 NAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL--EGSPDLKYA-KEVADYLGTVHHEF 292 (515)
Q Consensus 216 ~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~--~~~~d~~~A-~~va~~lg~~~~~~ 292 (515)
+.++..+..+.++.++||||+||+++|+++++.+ |.++.++++.. -...|...+ +.+|+++|++|+.+
T Consensus 220 ~~i~~~~~~~~~vvvalSGGVDSsvla~l~~~al---------G~~v~av~id~g~~~~~E~~~~~~~~a~~lgi~~~vv 290 (536)
T PLN02347 220 ELIKATVGPDEHVICALSGGVDSTVAATLVHKAI---------GDRLHCVFVDNGLLRYKEQERVMETFKRDLHLPVTCV 290 (536)
T ss_pred HHHHHHhccCCeEEEEecCChhHHHHHHHHHHHh---------CCcEEEEEEeCCCCChhHHHHHHHHHHHHcCCcEEEE
Confidence 4555566667889999999999999999999865 35788888863 333566666 77999999999998
Q ss_pred EeChhHHHHHHHHHHHhhccCCCCcccch--HHHH-HHH-HHHHhCC--CeEEEeccCccccc
Q 010213 293 HFTVQDGIDAIEEVIYHVETYDVTTIRAS--TPMF-LMS-RKIKSLG--VKMVISGEGSDEIF 349 (515)
Q Consensus 293 ~~~~~~~~~~l~~~~~~~e~~~~~~~~~~--~~~~-~l~-~~a~~~g--~~vlltG~GgDelf 349 (515)
.+++ .+++.++.+. ++.+-.-+.-. +..+ .+. +.+.+.| ++.++.|.-.|.+.
T Consensus 291 d~~e-~fl~~l~~~~---~pe~k~~~~~~~f~~~f~~~~~~~~~~~~~~~~~l~qGt~~~D~~ 349 (536)
T PLN02347 291 DASE-RFLSKLKGVT---DPEKKRKIIGAEFIEVFDEFAHKLEQKLGKKPAFLVQGTLYPDVI 349 (536)
T ss_pred eCcH-HHHhhCCCCC---ChHHhcchhCchHHHHHHHHHHHHHHhhCCCCcEEccCCcccccc
Confidence 8763 3344332221 11111111111 1111 122 2222334 48899999888876
|
|
| >PRK01565 thiamine biosynthesis protein ThiI; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.8e-06 Score=87.83 Aligned_cols=109 Identities=17% Similarity=0.189 Sum_probs=70.8
Q ss_pred ccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeec---CCCChHHHHHHHHHHhC-----CCceEEEe
Q 010213 223 MTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL---EGSPDLKYAKEVADYLG-----TVHHEFHF 294 (515)
Q Consensus 223 ~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~---~~~~d~~~A~~va~~lg-----~~~~~~~~ 294 (515)
.+++++.++||||+||+++++++.+.. .++.++++.. ....+...++++|+.++ ++|+.+++
T Consensus 174 g~~gkvvvllSGGiDS~vaa~l~~k~G----------~~v~av~~~~~~~~~~~~~~~~~~~a~~l~~~~~~i~~~vv~~ 243 (394)
T PRK01565 174 GTSGKALLLLSGGIDSPVAGYLAMKRG----------VEIEAVHFHSPPYTSERAKEKVIDLARILAKYGGRIKLHVVPF 243 (394)
T ss_pred CCCCCEEEEECCChhHHHHHHHHHHCC----------CEEEEEEEeCCCCCcHHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 355778999999999999999987743 5677777633 22346677888888884 88888876
Q ss_pred ChhHHHHHHHHHHHhhccCC-CCcccc-hHHHHHHHHHHHhCCCeEEEeccCcccc
Q 010213 295 TVQDGIDAIEEVIYHVETYD-VTTIRA-STPMFLMSRKIKSLGVKMVISGEGSDEI 348 (515)
Q Consensus 295 ~~~~~~~~l~~~~~~~e~~~-~~~~~~-~~~~~~l~~~a~~~g~~vlltG~GgDel 348 (515)
++. ...+.. ..+. ...+.. ...+-.+...|.+.|+.++.||+..|++
T Consensus 244 ~~~--~~~i~~-----~~~~~~~~v~~Rr~~~~~a~~~A~~~g~~~IvtG~~~~d~ 292 (394)
T PRK01565 244 TEI--QEEIKK-----KVPESYLMTLMRRFMMRIADKIAEKRGALAIVTGESLGQV 292 (394)
T ss_pred HHH--HHHHhh-----cCCCceEEEeHHHHHHHHHHHHHHHcCCCEEEEccccccc
Confidence 542 122211 1111 011111 1222345667888999999999998765
|
|
| >TIGR00032 argG argininosuccinate synthase | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.9e-06 Score=86.00 Aligned_cols=108 Identities=16% Similarity=0.118 Sum_probs=69.1
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC-CChHHHHHHHHHHhCC-CceEEEeChhHHHHH--
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-SPDLKYAKEVADYLGT-VHHEFHFTVQDGIDA-- 302 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~-~~d~~~A~~va~~lg~-~~~~~~~~~~~~~~~-- 302 (515)
+|.+++|||+||++++.++.+.. .++.++++.... ..|.+.+++.|+.+|+ +|+++.+.. ++.+.
T Consensus 1 kVvla~SGGlDSsvll~~l~e~g----------~~V~av~id~Gq~~~e~~~a~~~a~~lGi~~~~viD~~~-ef~~~~~ 69 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREKG----------YEVIAYTADVGQPEEDIDAIPEKALEYGAENHYTIDARE-EFVKDYG 69 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHcC----------CEEEEEEEecCCChHHHHHHHHHHHHhCCCeEEEEeCHH-HHHHhhc
Confidence 47899999999999999987652 578888886544 3588899999999997 687776643 33322
Q ss_pred HHHHH----HhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCc
Q 010213 303 IEEVI----YHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGS 345 (515)
Q Consensus 303 l~~~~----~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~Gg 345 (515)
++.+. +...-+....+.-....-.+.+.|++.|++++.+|.-+
T Consensus 70 ~~~i~~n~~y~~~Y~l~t~laR~li~~~l~~~A~~~G~~~Ia~G~t~ 116 (394)
T TIGR00032 70 FAAIQANAFYEGTYPLSTALARPLIAKKLVEAAKKEGANAVAHGCTG 116 (394)
T ss_pred hhhhcCCccccCcccccchhhHHHHHHHHHHHHHHcCCCEEEECccC
Confidence 11111 11101110000001111235677889999999999855
|
argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria. |
| >PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,] | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.8e-06 Score=78.31 Aligned_cols=104 Identities=16% Similarity=0.152 Sum_probs=62.2
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeec--CCC--ChHHHHHHHHHHhCCCceEEEeChhHHHHH
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL--EGS--PDLKYAKEVADYLGTVHHEFHFTVQDGIDA 302 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~--~~~--~d~~~A~~va~~lg~~~~~~~~~~~~~~~~ 302 (515)
+|.|++|||.||++++.++.+..... +.++.++++.. ... .|....+++++.+|++++...++..
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~------~~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~i~~~~~~~~~~----- 69 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRN------GIKLIAVHVDHGLREESDEEAEFVEEICEQLGIPLYIVRIDED----- 69 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTT------TTEEEEEEEE-STSCCHHHHHHHHHHHHHHTT-EEEEEE--CH-----
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhc------CCCeEEEEEecCCCcccchhHHHHHHHHHhcCCceEEEEeeee-----
Confidence 47899999999999999999875322 24677777653 322 3567889999999999998876530
Q ss_pred HHHHHHhhccCCCCcccch-HHHHHHHHHHHhCCCeEEEeccCcccc
Q 010213 303 IEEVIYHVETYDVTTIRAS-TPMFLMSRKIKSLGVKMVISGEGSDEI 348 (515)
Q Consensus 303 l~~~~~~~e~~~~~~~~~~-~~~~~l~~~a~~~g~~vlltG~GgDel 348 (515)
............ ....++.+.|.+.|++++++|+-.|..
T Consensus 70 -------~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~dD~ 109 (182)
T PF01171_consen 70 -------RKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHLDDQ 109 (182)
T ss_dssp -------CCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHHHH
T ss_pred -------ecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcCCcc
Confidence 000000000011 112356788899999999999999874
|
The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A. |
| >PRK08384 thiamine biosynthesis protein ThiI; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=7.9e-06 Score=83.34 Aligned_cols=112 Identities=20% Similarity=0.237 Sum_probs=70.2
Q ss_pred ccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCChHHHHHHHHHHhCCCce-----EEEeChh
Q 010213 223 MTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHH-----EFHFTVQ 297 (515)
Q Consensus 223 ~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg~~~~-----~~~~~~~ 297 (515)
.+.+++.+++|||+||++.+.++.+.+ .++.++++... ..+.+.++++|+.++..+. .+.++..
T Consensus 178 Gs~gkvlvllSGGiDSpVAa~ll~krG----------~~V~~v~f~~g-~~~~e~v~~la~~L~~~~~~~~i~l~~v~~~ 246 (381)
T PRK08384 178 GTQGKVVALLSGGIDSPVAAFLMMKRG----------VEVIPVHIYMG-EKTLEKVRKIWNQLKKYHYGGKAELIVVKPQ 246 (381)
T ss_pred CCCCcEEEEEeCChHHHHHHHHHHHcC----------CeEEEEEEEeC-HHHHHHHHHHHHHhcccccCCcceEEEEChH
Confidence 356789999999999999999998863 57777777432 3467788999999884322 2223322
Q ss_pred H---HHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCcccc
Q 010213 298 D---GIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (515)
Q Consensus 298 ~---~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDel 348 (515)
+ +...+.+.. .+.+ .+.++....+..+.+.|.+.|++.++||+..+.+
T Consensus 247 ~~~~v~~~i~~~~--~~~~-~C~~Ckr~m~r~a~~iA~~~g~~~IaTGhslgqv 297 (381)
T PRK08384 247 ERERIIQKLKELK--KENY-TCVFCKFMMVKHADRIAKEFGAKGIVMGDSLGQV 297 (381)
T ss_pred HHHHHHHHHHHhc--cCCC-chHHHHHHHHHHHHHHHHHcCCCEEEEcccchhH
Confidence 1 222222111 1111 1122222223455677889999999999987664
|
|
| >TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI | Back alignment and domain information |
|---|
Probab=98.22 E-value=8.3e-06 Score=83.67 Aligned_cols=111 Identities=19% Similarity=0.184 Sum_probs=69.0
Q ss_pred cccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC---CChHHHHHHHHHHhC---CCceEEEeChh
Q 010213 224 TDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG---SPDLKYAKEVADYLG---TVHHEFHFTVQ 297 (515)
Q Consensus 224 ~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~---~~d~~~A~~va~~lg---~~~~~~~~~~~ 297 (515)
+++++.+++|||+||++.++++.+.. .++.++++.... ..+...++.+|+.++ .+...+.++-.
T Consensus 171 ~~~kvlvllSGGiDS~vaa~ll~krG----------~~V~av~~~~~~~~~~~~~~~v~~l~~~l~~~~~~~~l~~v~~~ 240 (371)
T TIGR00342 171 TQGKVLALLSGGIDSPVAAFMMMKRG----------CRVVAVHFFNEPAASEKAREKVERLANSLNETGGSVKLYVFDFT 240 (371)
T ss_pred cCCeEEEEecCCchHHHHHHHHHHcC----------CeEEEEEEeCCCCccHHHHHHHHHHHHHHhhcCCCceEEEEeCH
Confidence 45678999999999999999997753 577777775432 246678899999884 32233334333
Q ss_pred HHHHHHHHHHHhhccCCCCcccc-hHHHHHHHHHHHhCCCeEEEeccCcccc
Q 010213 298 DGIDAIEEVIYHVETYDVTTIRA-STPMFLMSRKIKSLGVKMVISGEGSDEI 348 (515)
Q Consensus 298 ~~~~~l~~~~~~~e~~~~~~~~~-~~~~~~l~~~a~~~g~~vlltG~GgDel 348 (515)
+... .......... .++.. ...+-.+.+.|.+.|++.++||+..|++
T Consensus 241 ~~~~---~i~~~~~~~~-~cv~cRr~m~~~a~~~A~~~g~~~I~tG~~l~d~ 288 (371)
T TIGR00342 241 DVQE---EIIHIIPEGY-TCVLCRRMMYKAASKVAEKEGCLAIVTGESLGQV 288 (371)
T ss_pred HHHH---HHHhcCCCCc-eeHhHHHHHHHHHHHHHHHcCCCEEEEccChHhh
Confidence 3322 2221111111 11111 1222345677888999999999998874
|
The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis. |
| >PRK02628 nadE NAD synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.4e-05 Score=88.28 Aligned_cols=144 Identities=15% Similarity=0.103 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHhhcc--ccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCC--hHHHHHHHH
Q 010213 207 PLVLRQAFENAVIKRLMT--DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSP--DLKYAKEVA 282 (515)
Q Consensus 207 ~~~l~~~l~~aV~~rl~~--~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~--d~~~A~~va 282 (515)
.+++.+.+...++++++. ...+.+.||||+||+++++++.+....-.. ...++.++++...+++ ....|+++|
T Consensus 341 ~~~~~~~~v~~l~~~~~~~~~~~vvvglSGGiDSal~l~l~~~a~~~lg~---~~~~v~~v~mp~~~ss~~s~~~a~~la 417 (679)
T PRK02628 341 CYEAYNIQVSGLAQRLRATGLKKVVIGISGGLDSTHALLVAAKAMDRLGL---PRKNILAYTMPGFATTDRTKNNAVALM 417 (679)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHHHhhCC---CcceEEEEECCCCCCCHHHHHHHHHHH
Confidence 355566666667776643 457889999999999999998877421100 0046788887433343 457899999
Q ss_pred HHhCCCceEEEeChhHHHHHHHHHHHhh-c---cCCCC---cccchHHHHHHHHHHHhCCCeEEEeccCccccccCCccc
Q 010213 283 DYLGTVHHEFHFTVQDGIDAIEEVIYHV-E---TYDVT---TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 355 (515)
Q Consensus 283 ~~lg~~~~~~~~~~~~~~~~l~~~~~~~-e---~~~~~---~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~~ 355 (515)
+.+|++|+++.+.+ ..+...+.+... . ..... .+.+-+.+..++..|.+.|..|+-|| .-+|+.-||..+
T Consensus 418 ~~LGi~~~~i~I~~--~~~~~~~~l~~~~~~~~~~~~~t~~N~qaR~R~~~L~~~An~~g~lvl~Tg-n~sE~~~Gy~T~ 494 (679)
T PRK02628 418 KALGVTAREIDIRP--AALQMLKDIGHPFARGEPVYDVTFENVQAGERTQILFRLANQHGGIVIGTG-DLSELALGWCTY 494 (679)
T ss_pred HHhCCeEEEEEcHH--HHHHHHHHhccccccCCcccchhhhhhhHHHHHHHHHHHHhhcCcEEEcCC-chhhHHhCceec
Confidence 99999999988743 233222222110 0 00000 12333455677888889999999999 455778888765
Q ss_pred c
Q 010213 356 H 356 (515)
Q Consensus 356 ~ 356 (515)
.
T Consensus 495 ~ 495 (679)
T PRK02628 495 G 495 (679)
T ss_pred C
Confidence 4
|
|
| >cd01995 ExsB ExsB is a transcription regulator related protein | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.2e-05 Score=73.26 Aligned_cols=87 Identities=22% Similarity=0.273 Sum_probs=61.7
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--CChHHHHHHHHHHhCCCceEEEeChhHHHHHHH
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIE 304 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~ 304 (515)
++.+++|||+||++++.++.+.. .++.++++.+.. ..|.+.++++++.+| ++..+...
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~~----------~~v~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~--------- 60 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKEG----------YEVHALSFDYGQRHAKEEEAAKLIAEKLG-PSTYVPAR--------- 60 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHcC----------CcEEEEEEECCCCChhHHHHHHHHHHHHC-CCEEEeCc---------
Confidence 46789999999999999988653 467788876532 346789999999999 33322110
Q ss_pred HHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCcccc
Q 010213 305 EVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (515)
Q Consensus 305 ~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDel 348 (515)
.....-.+.+.|.+.|++.+++|+..|+.
T Consensus 61 ---------------~~~~~~~l~~~a~~~g~~~i~~G~~~~d~ 89 (169)
T cd01995 61 ---------------NLIFLSIAAAYAEALGAEAIIIGVNAEDY 89 (169)
T ss_pred ---------------CHHHHHHHHHHHHHCCCCEEEEeeccCcc
Confidence 01111234566778899999999999885
|
It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown |
| >COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.1e-05 Score=69.91 Aligned_cols=62 Identities=32% Similarity=0.334 Sum_probs=51.5
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCChHHHHHHHHHHhCCCceEEEeChhH
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQD 298 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg~~~~~~~~~~~~ 298 (515)
.+++++|||-|||+-|.++.+.+ ..+...|+.|.--+..++|++.|+.+|.+|..+.++.+-
T Consensus 2 ~v~vLfSGGKDSSLaA~iL~klg----------yev~LVTvnFGv~d~~k~A~~tA~~lgF~h~vl~Ldr~i 63 (198)
T COG2117 2 DVYVLFSGGKDSSLAALILDKLG----------YEVELVTVNFGVLDSWKYARETAAILGFPHEVLQLDREI 63 (198)
T ss_pred ceEEEecCCCchhHHHHHHHHhC----------CCcEEEEEEeccccchhhHHHHHHHhCCCcceeccCHHH
Confidence 47899999999999999998874 456666666656688999999999999999999886543
|
|
| >cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.3e-05 Score=72.60 Aligned_cols=115 Identities=18% Similarity=0.140 Sum_probs=68.2
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeec--CCCChHHHHHHHHHHhCCCceEEEeChhHHHHHHH
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL--EGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIE 304 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~--~~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~ 304 (515)
++.+.+|||.||++++.++.+..... .++..+++.. ......++++++++.+|++++.+......... ..
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-------~~~~~v~~dtg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~ 72 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-------KPVPVIFLDTGYEFPETYEFVDRVAERYGLPLVVVRPPDSPAEG-LA 72 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-------cCceEEEeCCCCCCHHHHHHHHHHHHHhCCCeEEECCCccHHHH-HH
Confidence 47899999999999999998865210 1566666543 22235678999999999998887654322111 00
Q ss_pred HHHHhhccCCCCcccch---HHHHHHHHHHHhCCCeEEEeccCcccccc
Q 010213 305 EVIYHVETYDVTTIRAS---TPMFLMSRKIKSLGVKMVISGEGSDEIFG 350 (515)
Q Consensus 305 ~~~~~~e~~~~~~~~~~---~~~~~l~~~a~~~g~~vlltG~GgDelf~ 350 (515)
..... ..+.....+.. .-.-.+.+.+++.+..++++|.-+||...
T Consensus 73 ~~~~~-~~~~~~~~~~c~~~~K~~~~~~~~~~~~~~~~~~G~r~de~~~ 120 (173)
T cd01713 73 LGLKG-FPLPSPDRRWCCRILKVEPLRRALKELGVVAWITGIRRDESAR 120 (173)
T ss_pred Hhhhc-cCCccccHHHhhccccchHHHHHHHhcCCeEEEEEeccccchh
Confidence 11110 11110000000 00113345556678999999999999643
|
PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti |
| >cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.6e-05 Score=72.42 Aligned_cols=92 Identities=18% Similarity=0.169 Sum_probs=61.6
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--------CChHHHHHHHHHHhCCCceEEEeChhH
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--------SPDLKYAKEVADYLGTVHHEFHFTVQD 298 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--------~~d~~~A~~va~~lg~~~~~~~~~~~~ 298 (515)
++.+++|||.||++.+.++.+.. .++.++++..+. ..+.+.++++|+.+|++|+.+.++...
T Consensus 1 kv~v~~SGGkDS~~al~~a~~~G----------~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~~~~~ 70 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEEG----------HEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEISGEE 70 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHHcC----------CEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeCCCCc
Confidence 36789999999999999988753 456655543221 137789999999999999988764311
Q ss_pred HHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccc
Q 010213 299 GIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 347 (515)
Q Consensus 299 ~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDe 347 (515)
-+.. ..++...+.+++.|++++++|.-.++
T Consensus 71 -e~~~------------------~~l~~~l~~~~~~g~~~vv~G~i~sd 100 (194)
T cd01994 71 -EDEV------------------EDLKELLRKLKEEGVDAVVFGAILSE 100 (194)
T ss_pred -hHHH------------------HHHHHHHHHHHHcCCCEEEECccccH
Confidence 1111 11222223333348999999988876
|
Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus. |
| >COG0171 NadE NAD synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.05 E-value=5.1e-05 Score=73.35 Aligned_cols=140 Identities=21% Similarity=0.236 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHhhcc--ccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC--CCChHHHHHHHHH
Q 010213 208 LVLRQAFENAVIKRLMT--DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVAD 283 (515)
Q Consensus 208 ~~l~~~l~~aV~~rl~~--~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~--~~~d~~~A~~va~ 283 (515)
++..+.+..-++.++.. ...+.+-+|||+||+++++++.+.+.+. +....+.++.+.+. ...+...|..+++
T Consensus 6 ~~~~~~~~~fl~~~l~~~~~k~~VlGiSGGiDSa~~~~La~~A~~~~----~~~~~~~av~mP~~~~~~~~~~da~~~~~ 81 (268)
T COG0171 6 EEEINRLVDFLRDYLKKAGFKGVVLGLSGGIDSALVLALAVRALGKG----DSKENVLAVRLPYGYTVQADEEDAQDLAE 81 (268)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCeEEEcccChHHHHHHHHHHHHhccc----cchhheeeEECCCCCccccCHHHHHHHHH
Confidence 34444555555555542 2346677999999999999999887420 00023777777665 4467889999999
Q ss_pred HhCCCceEEEeChhHHHHHH-HHHHHhh-----ccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccccCCcc
Q 010213 284 YLGTVHHEFHFTVQDGIDAI-EEVIYHV-----ETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (515)
Q Consensus 284 ~lg~~~~~~~~~~~~~~~~l-~~~~~~~-----e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~ 354 (515)
.+|++..++++++ ..+.+ ..+.... +.....++.+...+-.++..|.+.|.-|+=|| ..+|+.-||-.
T Consensus 82 ~lg~~~~~i~I~~--~v~~~~~~~~~~~~~~~~~~~~~~NikaR~Rm~~lY~~An~~~~lVlGTg-n~sE~~~Gy~T 155 (268)
T COG0171 82 ALGIDYKEINIKP--AVDAFLKKLLKLFLGIYLEDLALGNIKARLRMVILYAIANKLGGLVLGTG-NKSELALGYFT 155 (268)
T ss_pred HhCCceEEEecHH--HHHHHHHhhhhhhcccchhhHHHhhhhHHHHHHHHHHHHhhcCCEEEcCC-cHHHHhcCcee
Confidence 9999977776653 33332 2211111 11111122333455566666777776566565 45688888865
|
|
| >TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.1e-05 Score=73.41 Aligned_cols=89 Identities=19% Similarity=0.237 Sum_probs=59.3
Q ss_pred EeecCCcchHHHHHHHHHHhccccccccCCCcee-eEEeecC-------CCChHHHHHHHHHHhCCCceEEEeChhHHHH
Q 010213 230 VLLSGGLDSSLVASITARHLAGTKAARQWGTQLH-SFCVGLE-------GSPDLKYAKEVADYLGTVHHEFHFTVQDGID 301 (515)
Q Consensus 230 v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~-~~t~~~~-------~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~ 301 (515)
+++|||+||++.+..+.+.. .++. .+++..+ ...+.+.++++|+.+|++|+.+.++... ..
T Consensus 2 vl~SGGkDS~~al~~a~~~G----------~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgip~~~i~~~~~~-~~ 70 (218)
T TIGR03679 2 ALYSGGKDSNYALYKALEEG----------HEVRCLITVVPENEESYMFHTPNIELTRLQAEALGIPLVKIETSGEK-EK 70 (218)
T ss_pred eeecCcHHHHHHHHHHHHcC----------CEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCCCEEEEECCCCC-hH
Confidence 68999999999999888743 4553 3344222 1347899999999999999988875210 00
Q ss_pred HHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccc
Q 010213 302 AIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 347 (515)
Q Consensus 302 ~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDe 347 (515)
..+ .++...+.+++.|++.+++|.-.++
T Consensus 71 ~~~------------------~l~~~l~~~~~~g~~~vv~G~i~sd 98 (218)
T TIGR03679 71 EVE------------------DLKGALKELKREGVEGIVTGAIASR 98 (218)
T ss_pred HHH------------------HHHHHHHHHHHcCCCEEEECCcccH
Confidence 000 0233334455559999999987763
|
This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes. |
| >PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.7e-05 Score=82.68 Aligned_cols=111 Identities=18% Similarity=0.269 Sum_probs=68.7
Q ss_pred cccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCC----ChHHHHHHHHHHhCCCce--EEEeChh
Q 010213 224 TDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS----PDLKYAKEVADYLGTVHH--EFHFTVQ 297 (515)
Q Consensus 224 ~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~----~d~~~A~~va~~lg~~~~--~~~~~~~ 297 (515)
+.+++.++||||+||++.++++.+.. ..+.++++.+... .+.+.++.++++++.+|. .+.++-.
T Consensus 176 ~~gk~lvllSGGiDS~va~~~~~krG----------~~v~~l~f~~g~~~~~~~~~~~a~~l~~~~~~~~~~~l~~v~~~ 245 (482)
T PRK01269 176 TQEDVLSLISGGFDSGVASYMLMRRG----------SRVHYCFFNLGGAAHEIGVKQVAHYLWNRYGSSHRVRFISVDFE 245 (482)
T ss_pred ccCeEEEEEcCCchHHHHHHHHHHcC----------CEEEEEEEecCCchhHHHHHHHHHHHHHHhCccCCceEEEEecH
Confidence 45678899999999999999887753 5777777754332 257889999988886554 3334322
Q ss_pred HHHHHHHHHHHhhccCCCCc-ccchHHHHHHHHHHHhCCCeEEEeccCcccc
Q 010213 298 DGIDAIEEVIYHVETYDVTT-IRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (515)
Q Consensus 298 ~~~~~l~~~~~~~e~~~~~~-~~~~~~~~~l~~~a~~~g~~vlltG~GgDel 348 (515)
+... .+..... ..... +.....+-.+.+.|.+.|++.++||+..|++
T Consensus 246 ~~~~---~i~~~~~-~~~~~~v~rR~ml~iA~~~A~~~ga~~IvtG~~l~dv 293 (482)
T PRK01269 246 PVVG---EILEKVD-DGQMGVVLKRMMLRAASKVAERYGIQALVTGEALGQV 293 (482)
T ss_pred HHHH---HHHhcCC-CceecHHHHHHHHHHHHHHHHHcCCCEEEECcChHhh
Confidence 2222 2221111 11111 1111111123567788999999999998875
|
|
| >PRK05253 sulfate adenylyltransferase subunit 2; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=7.8e-05 Score=73.81 Aligned_cols=108 Identities=16% Similarity=0.161 Sum_probs=68.3
Q ss_pred cceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC-CCh-HHHHHHHHHHhCCCceEEEeChhHHHHHH
Q 010213 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-SPD-LKYAKEVADYLGTVHHEFHFTVQDGIDAI 303 (515)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~-~~d-~~~A~~va~~lg~~~~~~~~~~~~~~~~l 303 (515)
.++++++|||.||++++.++.+..... ..++..+++.... .+| .+++.++++.+|++++++... +.+
T Consensus 28 ~~~vv~~SGGKDS~VLL~La~ka~~~~------~~~~~vl~iDTG~~FpEt~ef~d~~a~~~gl~l~v~~~~--~~i--- 96 (301)
T PRK05253 28 ENPVMLYSIGKDSSVMLHLARKAFYPG------KLPFPLLHVDTGWKFPEMIEFRDRRAKELGLELIVHSNP--EGI--- 96 (301)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhhccc------CCCeeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEeCh--HHH---
Confidence 468899999999999999998875321 1356666664322 233 578999999999998776432 211
Q ss_pred HHHHHhhccCCCC--cccchHHHHHHHHHHHhCCCeEEEeccCccc
Q 010213 304 EEVIYHVETYDVT--TIRASTPMFLMSRKIKSLGVKMVISGEGSDE 347 (515)
Q Consensus 304 ~~~~~~~e~~~~~--~~~~~~~~~~l~~~a~~~g~~vlltG~GgDe 347 (515)
......+... ..+...-...+.+.+++.|++++++|.-.||
T Consensus 97 ---~~g~~~~~~~~~~cC~~lK~~pL~~al~e~g~da~~~G~RrDE 139 (301)
T PRK05253 97 ---ARGINPFRHGSAKHTNAMKTEGLKQALEKYGFDAAFGGARRDE 139 (301)
T ss_pred ---hcCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEEeccccch
Confidence 1111111110 0111112234556777889999999999998
|
|
| >COG0121 Predicted glutamine amidotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00023 Score=68.34 Aligned_cols=42 Identities=24% Similarity=0.337 Sum_probs=34.4
Q ss_pred CEEEEEeeeeecCCC--CCCCceeeC--CCcEEEEEeeEEcChHHH
Q 010213 43 DFYLAHQRLAIIDPA--SGDQPLYNE--DKKIVVTVNGEIYNHEAL 84 (515)
Q Consensus 43 ~~~l~h~rl~~~~~~--~~~qP~~~~--~~~~~~~~nGei~n~~~L 84 (515)
.++++|.|.|+.|.- .++|||..+ ...+.++|||.|.+++.+
T Consensus 71 ~~viaHvR~At~G~vs~~ntHPF~~~~~~~~~~FaHNG~l~~~~~~ 116 (252)
T COG0121 71 ELVIAHVRKATQGEVSLSNTHPFTRELWGYIWLFAHNGQLDKFKLL 116 (252)
T ss_pred cEEEEEEeccCCCcccccCCCCccccCCccceEEEecCcccCcccc
Confidence 478999999999842 589999865 345799999999999874
|
|
| >PRK08576 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00011 Score=76.12 Aligned_cols=121 Identities=21% Similarity=0.199 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHhhcccc--ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC--CCChHHHHHHHHHHh
Q 010213 210 LRQAFENAVIKRLMTDV--PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVADYL 285 (515)
Q Consensus 210 l~~~l~~aV~~rl~~~~--~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~--~~~d~~~A~~va~~l 285 (515)
+-+.+++.+.+.++... ++.+.+|||.||++++.++.+.. .++.++++... .....++++++++.+
T Consensus 217 ~le~~e~~~~~~Lr~~~~~rVvVafSGGKDStvLL~La~k~~----------~~V~aV~iDTG~e~pet~e~~~~lae~L 286 (438)
T PRK08576 217 VLEAFEKASIKFLRKFEEWTVIVPWSGGKDSTAALLLAKKAF----------GDVTAVYVDTGYEMPLTDEYVEKVAEKL 286 (438)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEEcChHHHHHHHHHHHHhC----------CCCEEEEeCCCCCChHHHHHHHHHHHHc
Confidence 44445555444444333 79999999999999999988865 24667766432 223578899999999
Q ss_pred CCCceEEEeChhHHHHHHHHHHHhhccCCCC-cccchHHHHHHHHHHHhCCCeEEEeccCccc
Q 010213 286 GTVHHEFHFTVQDGIDAIEEVIYHVETYDVT-TIRASTPMFLMSRKIKSLGVKMVISGEGSDE 347 (515)
Q Consensus 286 g~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~-~~~~~~~~~~l~~~a~~~g~~vlltG~GgDe 347 (515)
|++++...++... .... ...+... ..+...-...+.+.+++.|++++++|+-.||
T Consensus 287 GI~lii~~v~~~~---~~~~----~g~p~~~~rcCt~lK~~pL~raake~g~~~iatG~R~dE 342 (438)
T PRK08576 287 GVDLIRAGVDVPM---PIEK----YGMPTHSNRWCTKLKVEALEEAIRELEDGLLVVGDRDGE 342 (438)
T ss_pred CCCEEEcccCHHH---Hhhh----cCCCCcccchhhHHHHHHHHHHHHhCCCCEEEEEeeHHH
Confidence 9988762222111 1110 1111111 1111111224556677789999999987666
|
|
| >PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell | Back alignment and domain information |
|---|
Probab=97.84 E-value=5.3e-05 Score=70.04 Aligned_cols=110 Identities=17% Similarity=0.256 Sum_probs=53.9
Q ss_pred ccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEee---cCCCChHHHHHHHHHHhCC-----CceEEEeCh
Q 010213 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG---LEGSPDLKYAKEVADYLGT-----VHHEFHFTV 296 (515)
Q Consensus 225 ~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~---~~~~~d~~~A~~va~~lg~-----~~~~~~~~~ 296 (515)
.+++-++||||+||.+-+.++.+.+ -.+.++++. +.+......++++++.+.. ....+.++-
T Consensus 3 ~gk~l~LlSGGiDSpVAa~lm~krG----------~~V~~l~f~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~l~~v~~ 72 (197)
T PF02568_consen 3 QGKALALLSGGIDSPVAAWLMMKRG----------CEVIALHFDSPPFTGEKAREKVEELAEKLSEYSPGHKIRLYVVDF 72 (197)
T ss_dssp T-EEEEE-SSCCHHHHHHHHHHCBT-----------EEEEEEEE-TTTSSCCCHHHHHHHHHHHHCCSTTS-EEEEEECH
T ss_pred CceEEEEecCCccHHHHHHHHHHCC----------CEEEEEEEECCCCCCHHHHHHHHHHHHHHHHhCCCcceeEEEECc
Confidence 4577899999999999988888753 567666664 2233344556666665532 233333433
Q ss_pred hHHHHHHHHHHHhhccCCCCcccchHHHHHH-HHHHHhCCCeEEEeccCcccc
Q 010213 297 QDGIDAIEEVIYHVETYDVTTIRASTPMFLM-SRKIKSLGVKMVISGEGSDEI 348 (515)
Q Consensus 297 ~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l-~~~a~~~g~~vlltG~GgDel 348 (515)
.+... ++...... ..+++..-..|+.. .+.|.+.|++.++||+---++
T Consensus 73 ~~~~~---~i~~~~~~-~~~ci~ckr~M~r~A~~ia~~~ga~~IvTGEsLGQv 121 (197)
T PF02568_consen 73 TEVQK---EILRGVKE-RNPCIDCKRFMYRIAEEIAEEEGADAIVTGESLGQV 121 (197)
T ss_dssp HHHHH---HHHHHS-G-GGHHHHHHHHHHHHHHHHHHHTT--EEE----SSST
T ss_pred HHHHH---HHHhcCCc-cchhHHHHHHHHHHHHHHHHHCCCCEEEeCchhHHH
Confidence 33332 22222211 11122222233433 356778999999999765443
|
ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A. |
| >PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6 | Back alignment and domain information |
|---|
Probab=97.82 E-value=9.9e-05 Score=74.90 Aligned_cols=108 Identities=23% Similarity=0.292 Sum_probs=65.7
Q ss_pred EeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCC-ChHHHHHHHHHHhCC-CceEEEeChhHHH-HHHHHH
Q 010213 230 VLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS-PDLKYAKEVADYLGT-VHHEFHFTVQDGI-DAIEEV 306 (515)
Q Consensus 230 v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~-~d~~~A~~va~~lg~-~~~~~~~~~~~~~-~~l~~~ 306 (515)
+++|||||||+++..+.+.. +.+++||++..-.. .|...+++-|..+|. +++.+.... ++. +.+-..
T Consensus 2 LAySGGLDTS~~l~~L~e~~---------~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r~-ef~~~~i~~a 71 (388)
T PF00764_consen 2 LAYSGGLDTSVILKWLKEEG---------GYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDARD-EFAEDYIFPA 71 (388)
T ss_dssp EE--SSHHHHHHHHHHHHTT---------TEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-HH-HHHHHTHHHH
T ss_pred eeeCCChHHHHHHHHHHhhc---------CceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchHH-HHHHHHHHHH
Confidence 67999999999998888764 25899999877555 688899999999998 788877644 344 333344
Q ss_pred HHhhc----cCCCCcccchHHH--HHHHHHHHhCCCeEEE---eccCcccc
Q 010213 307 IYHVE----TYDVTTIRASTPM--FLMSRKIKSLGVKMVI---SGEGSDEI 348 (515)
Q Consensus 307 ~~~~e----~~~~~~~~~~~~~--~~l~~~a~~~g~~vll---tG~GgDel 348 (515)
+.... .+... -..+.|. -.+.+.|++.|++++. ||-|-|++
T Consensus 72 I~anA~Yeg~YpL~-tsl~RplIa~~~v~~A~~~ga~~vaHG~TgkGNDqv 121 (388)
T PF00764_consen 72 IKANALYEGRYPLS-TSLARPLIAKKLVEVAREEGADAVAHGCTGKGNDQV 121 (388)
T ss_dssp HHTT--BTTTB--C-CCCHHHHHHHHHHHHHHHHT-SEEE----TTSSHHH
T ss_pred HHHHHHhCCCcccc-ccchHHHHHHHHHHHHHHcCCeEEeccCCcCCCchh
Confidence 43221 22211 1112222 2345778888999886 56666764
|
3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C .... |
| >COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00014 Score=66.15 Aligned_cols=123 Identities=22% Similarity=0.198 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhhcc----------ccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC---CCh-
Q 010213 209 VLRQAFENAVIKRLMT----------DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG---SPD- 274 (515)
Q Consensus 209 ~l~~~l~~aV~~rl~~----------~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~---~~d- 274 (515)
+..+.+.+.+..|+.. +.+++|++|||.|||+.+-++.... +++.... .+.
T Consensus 34 e~~~rl~e~l~~RL~g~~ef~r~~id~~kiaVA~SGG~DSsas~iilR~~g---------------~~v~p~t~~Lp~~i 98 (255)
T COG1365 34 EVYERLRELLKKRLEGEKEFERIKIDKPKIAVAYSGGVDSSASAIILRWAG---------------FTVDPGTAILPDHI 98 (255)
T ss_pred HHHHHHHHHHHHHhcCchhcccCCCCCceEEEEecCCcchHHHHHHHHhhc---------------eeeccccccCCHHH
Confidence 3556667777777743 2678999999999999888887643 3332111 123
Q ss_pred HHHHHHHHHHhCCCceEEEeChhHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccccCCcc
Q 010213 275 LKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (515)
Q Consensus 275 ~~~A~~va~~lg~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~ 354 (515)
+..+...+..+|..+..+..+ ...+.+-.- ...+.++.-+++........++++.+++++.+|++ |=.||..
T Consensus 99 r~n~~~l~~~lg~~p~yveed----l~~i~kGal-nGRfhpCGRCh~~I~~~V~~k~re~di~~vafGDl---Ls~G~~s 170 (255)
T COG1365 99 RRNKEELETLLGEVPEYVEED----LEDIEKGAL-NGRFHPCGRCHSMIENAVMDKARELDIDVVAFGDL---LSTGYGS 170 (255)
T ss_pred hHHHHHHHHHHccCHHHHHHH----HHHHHhhhc-cCCCCCcchHHHHHHHHHHHHHHhcCCeEEEEccc---ccccccc
Confidence 345778889999876543221 222222110 12233333334555567788899999999999954 4567754
|
|
| >PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00013 Score=76.50 Aligned_cols=77 Identities=18% Similarity=0.167 Sum_probs=55.3
Q ss_pred HHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC--C-CC-hHHHHHHHHHHhCCCce
Q 010213 215 ENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--G-SP-DLKYAKEVADYLGTVHH 290 (515)
Q Consensus 215 ~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~--~-~~-d~~~A~~va~~lg~~~~ 290 (515)
...+...+....++.+++|||.||++++.++.+..... .+.++.++++... . ++ +..+++.+|+.+|++++
T Consensus 5 ~~~l~~~l~~~~~ilvavSGG~DS~~Ll~~l~~~~~~~-----~~~~l~a~hvnhglr~~s~~~~~~~~~~~~~l~i~~~ 79 (436)
T PRK10660 5 TLTLNRQLLTSRQILVAFSGGLDSTVLLHLLVQWRTEN-----PGVTLRAIHVHHGLSPNADSWVKHCEQVCQQWQVPLV 79 (436)
T ss_pred HHHHHHhcCCCCeEEEEecCCHHHHHHHHHHHHHHHhc-----CCCeEEEEEEeCCCCcchHHHHHHHHHHHHHcCCcEE
Confidence 34455566677889999999999999999987643110 1246777777542 2 22 35788999999999999
Q ss_pred EEEeCh
Q 010213 291 EFHFTV 296 (515)
Q Consensus 291 ~~~~~~ 296 (515)
...++.
T Consensus 80 ~~~~~~ 85 (436)
T PRK10660 80 VERVQL 85 (436)
T ss_pred EEEEec
Confidence 887653
|
|
| >PRK05370 argininosuccinate synthase; Validated | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00046 Score=70.59 Aligned_cols=117 Identities=17% Similarity=0.104 Sum_probs=76.5
Q ss_pred hhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--CChHHHHHHHHHHhCC-CceEEEeChh
Q 010213 221 RLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGT-VHHEFHFTVQ 297 (515)
Q Consensus 221 rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--~~d~~~A~~va~~lg~-~~~~~~~~~~ 297 (515)
.|....+|+++.|||||||+++..+.+.. ..++||++..-. ..|.+.+++-|..+|. ++..+....
T Consensus 7 ~l~~~~KVvLAYSGGLDTSv~l~wL~e~~----------~eVia~~aDvGQ~~~ed~~~i~~kA~~~GA~~~~viDlr~- 75 (447)
T PRK05370 7 HLPVGQRVGIAFSGGLDTSAALLWMRQKG----------AVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRA- 75 (447)
T ss_pred hCCCCCEEEEEecCCchHHHHHHHHHhcC----------CeEEEEEEECCCCCccchHHHHHHHHHhCCCEEEEeccHH-
Confidence 35556689999999999999998877642 579999986644 5788899999999999 466666543
Q ss_pred HHHHHHHHHHHhhcc--------CCC-CcccchHHHHHHHHHHHhCCCeEEE---eccCcccc
Q 010213 298 DGIDAIEEVIYHVET--------YDV-TTIRASTPMFLMSRKIKSLGVKMVI---SGEGSDEI 348 (515)
Q Consensus 298 ~~~~~l~~~~~~~e~--------~~~-~~~~~~~~~~~l~~~a~~~g~~vll---tG~GgDel 348 (515)
++.+..-..+..... +.. ..+...+..-.+.+.|++.|++++. ||-|-|++
T Consensus 76 eF~e~~i~aI~anA~Y~~~~e~~Y~l~t~LaRplia~~lv~~A~~~ga~aIAHG~TGKGNDQv 138 (447)
T PRK05370 76 QLVAEGIAAIQCGAFHISTGGVTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIE 138 (447)
T ss_pred HHHHHHHHHHHcCCccccccCccccCCCcchHHHHHHHHHHHHHHhCCcEEEEcCCCCCCchH
Confidence 444332244442221 211 1111111223456778899999886 56667765
|
|
| >PLN02339 NAD+ synthase (glutamine-hydrolysing) | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0009 Score=74.17 Aligned_cols=89 Identities=25% Similarity=0.222 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHhhccc--cceEEeecCCcchHHHHHHH-------HHHhcc--ccc----------cccCC-------
Q 010213 208 LVLRQAFENAVIKRLMTD--VPFGVLLSGGLDSSLVASIT-------ARHLAG--TKA----------ARQWG------- 259 (515)
Q Consensus 208 ~~l~~~l~~aV~~rl~~~--~~v~v~LSGGlDSs~iaa~a-------~~~~~~--~~~----------~~~~~------- 259 (515)
+++.......++.+++.. ..+.+.||||+||+++|+++ .+.+.. .++ .+.+-
T Consensus 329 ~ei~~~~~~~L~d~l~~~g~~g~vlglSGGiDSa~~a~lv~~~~~~~~~a~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 408 (700)
T PLN02339 329 EEIALGPACWLWDYLRRSGASGFLLPLSGGADSSSVAAIVGSMCQLVVKAIREGDEQVKADARRIGNYADGEVPTDSKEF 408 (700)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhccccccccccchhhh
Confidence 566666666677776533 45678899999999988885 333311 100 00000
Q ss_pred --CceeeEEeecCCCC--hHHHHHHHHHHhCCCceEEEeCh
Q 010213 260 --TQLHSFCVGLEGSP--DLKYAKEVADYLGTVHHEFHFTV 296 (515)
Q Consensus 260 --~~i~~~t~~~~~~~--d~~~A~~va~~lg~~~~~~~~~~ 296 (515)
..+++++++...++ ....|+++|+.+|+.|+++.+++
T Consensus 409 ~~~~~~~v~mp~~~ss~~t~~~A~~la~~lG~~~~~i~I~~ 449 (700)
T PLN02339 409 AKRIFYTVYMGSENSSEETRSRAKQLADEIGSSHLDVKIDG 449 (700)
T ss_pred hcceeEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEeCHH
Confidence 11567777655443 45789999999999999988864
|
|
| >COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0017 Score=64.69 Aligned_cols=114 Identities=23% Similarity=0.228 Sum_probs=74.3
Q ss_pred ccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC-CChHHHHHHHHHHhCCC-ceEEEeChhHHHHH
Q 010213 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-SPDLKYAKEVADYLGTV-HHEFHFTVQDGIDA 302 (515)
Q Consensus 225 ~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~-~~d~~~A~~va~~lg~~-~~~~~~~~~~~~~~ 302 (515)
..+|+++.|||||+|++.-.+.+.. +..+.|||+..-. .+|.+.+++-|..+|.. |..+...++-.-+.
T Consensus 4 ~kkvvLAYSGGLDTSv~i~wL~e~~---------~~eVia~tadvGQ~eed~~~i~eKA~~~Ga~~~~viD~reeF~~~y 74 (403)
T COG0137 4 VKKVVLAYSGGLDTSVAIKWLKEKG---------GAEVIAVTADVGQPEEDLDAIREKALELGAEEAYVIDAREEFVEDY 74 (403)
T ss_pred CcEEEEEecCCccHHHHHHHHHHhc---------CceEEEEEEeCCCChHHhHHHHHHHHHhCCceEEEeecHHHHHHHH
Confidence 3578899999999999998888765 3578999987655 48999999999999987 66666544322233
Q ss_pred HHHHHHhh---cc-CCCCcccchHHH--HHHHHHHHhCCCeEEE---eccCcccc
Q 010213 303 IEEVIYHV---ET-YDVTTIRASTPM--FLMSRKIKSLGVKMVI---SGEGSDEI 348 (515)
Q Consensus 303 l~~~~~~~---e~-~~~~~~~~~~~~--~~l~~~a~~~g~~vll---tG~GgDel 348 (515)
+-..+... |. +...+ ..+.|+ -.+.+.|++.|+..+- ||-|-|.+
T Consensus 75 i~~~i~ana~Yeg~YpL~T-alaRPLIak~lVe~A~k~ga~avaHGcTGKGNDQv 128 (403)
T COG0137 75 IFPAIKANALYEGVYPLGT-ALARPLIAKKLVEAAKKEGADAVAHGCTGKGNDQV 128 (403)
T ss_pred HHHHHHhhceeeccccccc-hhhHHHHHHHHHHHHHHcCCCEEEecCCCCCCcee
Confidence 33333222 22 22211 112222 2344667888887764 67777876
|
|
| >COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00017 Score=77.58 Aligned_cols=93 Identities=24% Similarity=0.232 Sum_probs=80.2
Q ss_pred ccccccCceeccCCCCHHHHHHHHcCCccccccCCCCCcchhHHHHHhhccCCCCCCChhhhhcccCCCCCCCchhhHH-
Q 010213 385 KSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWID- 463 (515)
Q Consensus 385 ~~~~~~g~e~r~PflD~~lve~~~~lP~~~k~~~~~~~~~~K~lLR~a~~~~~~~~lP~~i~~R~K~~f~~~~~~~~~~- 463 (515)
+ +|+.+++.|.||+|. ++++.+||.+.|...+. +|.++|.+.+. .+|+.+..|+|.+|+.+.. .|..
T Consensus 419 ~-~m~~~le~Rvpf~~~--~~l~~~i~~~~K~~~~~----gk~~lr~~~~~----~~p~~~~~r~k~~~~~~~~-~~~~~ 486 (542)
T COG0367 419 R-SMAKKLERRVPFSDG--VELPEEIPWREKIAFGY----GKGILRIAYEK----ILPDFILSRKKLGFPKPLW-GRYYE 486 (542)
T ss_pred h-hhhhhhheecccccc--hhhHhhCChhhhhhcCC----cchhhHhhhhc----cCcHHHhcccccCCCcccc-ccccc
Confidence 7 899999999999999 99999999999998754 79999999999 9999999999999999965 4543
Q ss_pred -HHHHHHHHhcChHHHHhcCccCCCCC
Q 010213 464 -GLKAHAEQHVTDKMVQNAQYIFPHNT 489 (515)
Q Consensus 464 -~~~~~~~~~l~~~~l~~~g~~~~~~~ 489 (515)
...+++.+++.++.....++++...+
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~v 513 (542)
T COG0367 487 NSLLLWLYRLIEEEFSPEYPLVDLALV 513 (542)
T ss_pred chHHHHHHHHHhhhcccccchhhhHHH
Confidence 35788888888887777778776543
|
|
| >TIGR02039 CysD sulfate adenylyltransferase, small subunit | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0014 Score=64.41 Aligned_cols=120 Identities=11% Similarity=0.063 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC-CCh-HHHHHHHHHHhCCC
Q 010213 211 RQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-SPD-LKYAKEVADYLGTV 288 (515)
Q Consensus 211 ~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~-~~d-~~~A~~va~~lg~~ 288 (515)
.+.|+.++... ....+++|||.||++++.++.+..... ..++..+++...- .+| .++..++++.+|++
T Consensus 9 i~ilRe~~~~f----~~~vv~~SGGKDS~VlLhLa~kaf~~~------~~p~~vl~IDTG~~F~Et~efrd~~a~~~gl~ 78 (294)
T TIGR02039 9 IHIIREVAAEF----ERPVMLYSIGKDSSVLLHLARKAFYPG------PLPFPLLHVDTGWKFREMIAFRDHMVAKYGLR 78 (294)
T ss_pred HHHHHHHHHhc----CCcEEEEecChHHHHHHHHHHHHhccc------CCCeEEEEEecCCCCHHHHHHHHHHHHHhCCC
Confidence 34454444432 234688999999999999999876321 1356677764321 244 36788999999999
Q ss_pred ceEEEeChhHHHHHHHHHHHhhccCCC--CcccchHHHHHHHHHHHhCCCeEEEeccCcccc
Q 010213 289 HHEFHFTVQDGIDAIEEVIYHVETYDV--TTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (515)
Q Consensus 289 ~~~~~~~~~~~~~~l~~~~~~~e~~~~--~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDel 348 (515)
++++... +... +....+.. ...+...-...+.+.+.+.|.+++++|.--||-
T Consensus 79 l~v~~~~--~~~~------~g~~~~~~~~~~~c~vlK~~pL~~al~e~g~da~itG~RRDEe 132 (294)
T TIGR02039 79 LIVHSNE--EGIA------DGINPFTEGSALHTDIMKTEALRQALDKNQFDAAFGGARRDEE 132 (294)
T ss_pred EEEEech--hhhh------cCccccccChHHHhhHHHHHHHHHHHHHcCCCEEEecCChhhh
Confidence 8776542 2111 11111110 001112223456666777899999999998884
|
In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. |
| >PRK02090 phosphoadenosine phosphosulfate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00091 Score=64.52 Aligned_cols=71 Identities=8% Similarity=0.063 Sum_probs=49.5
Q ss_pred HHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEee--cCCCChHHHHHHHHHHhCCCc
Q 010213 212 QAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG--LEGSPDLKYAKEVADYLGTVH 289 (515)
Q Consensus 212 ~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~--~~~~~d~~~A~~va~~lg~~~ 289 (515)
+.++.+++.. +.++.+.+|||.||++++.++.+.. .++..+.+. .....-.++++++++++|+++
T Consensus 30 e~i~~a~~~~---~~~i~vs~SGGKDS~vlL~L~~~~~----------~~i~vvfiDTG~~~pet~e~~~~~~~~~gl~l 96 (241)
T PRK02090 30 ERLAWALENF---GGRLALVSSFGAEDAVLLHLVAQVD----------PDIPVIFLDTGYLFPETYRFIDELTERLLLNL 96 (241)
T ss_pred HHHHHHHHHc---CCCEEEEecCCHHHHHHHHHHHhcC----------CCCcEEEecCCCCCHHHHHHHHHHHHHhCCCE
Confidence 3444444432 2358999999999999999998853 456666653 322223578899999999998
Q ss_pred eEEEeC
Q 010213 290 HEFHFT 295 (515)
Q Consensus 290 ~~~~~~ 295 (515)
+++...
T Consensus 97 ~v~~~~ 102 (241)
T PRK02090 97 KVYRPD 102 (241)
T ss_pred EEECCC
Confidence 877643
|
|
| >COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0025 Score=60.70 Aligned_cols=76 Identities=24% Similarity=0.241 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEee--cCCCChHHHHHHH-HHH
Q 010213 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG--LEGSPDLKYAKEV-ADY 284 (515)
Q Consensus 208 ~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~--~~~~~d~~~A~~v-a~~ 284 (515)
+.+.+...+.++.++. +.++-+.||||+|||+.+.++++.. |.+++|.-+. +-.-.|.+...++ .++
T Consensus 5 ~~~ie~~i~~ir~~vg-~~kvi~alSGGVDSsv~a~L~~~Ai---------Gd~l~cvfVD~GLlR~~E~e~V~~~f~~~ 74 (315)
T COG0519 5 ENFIEEAIEEIREQVG-DGKVILALSGGVDSSVAAVLAHRAI---------GDQLTCVFVDHGLLRKGEAEQVVEMFREH 74 (315)
T ss_pred HHHHHHHHHHHHHHhC-CceEEEEecCCCcHHHHHHHHHHHh---------hcceEEEEecCCcccCCcHHHHHHHHHhh
Confidence 3455555566666665 6778899999999999999999987 4567777653 2223565555444 456
Q ss_pred hCCCceEEE
Q 010213 285 LGTVHHEFH 293 (515)
Q Consensus 285 lg~~~~~~~ 293 (515)
+|++...+.
T Consensus 75 ~~~nl~~Vd 83 (315)
T COG0519 75 LGLNLIVVD 83 (315)
T ss_pred cCCceEEEc
Confidence 888866654
|
|
| >PRK08557 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0095 Score=61.74 Aligned_cols=59 Identities=19% Similarity=0.316 Sum_probs=43.4
Q ss_pred ccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC-CCCh-HHHHHHHHHHhCCCceEEE
Q 010213 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPD-LKYAKEVADYLGTVHHEFH 293 (515)
Q Consensus 225 ~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~-~~~d-~~~A~~va~~lg~~~~~~~ 293 (515)
..++.+.+|||.||++++.++.+.. .++..+++... ..+| .++++++++.+|++.+.+.
T Consensus 181 ~~~i~vsfSGGKDS~vlL~L~~~~~----------~~i~vvfvDTG~efpET~e~ve~v~~~ygl~i~v~~ 241 (417)
T PRK08557 181 GYAINASFSGGKDSSVSTLLAKEVI----------PDLEVIFIDTGLEYPETINYVKDFAKKYDLNLDTLD 241 (417)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHhC----------CCCEEEEEECCCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 3568899999999999999888764 34555555321 1233 4789999999999987764
|
|
| >PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0036 Score=56.83 Aligned_cols=106 Identities=17% Similarity=0.164 Sum_probs=54.4
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC-CCCh-HHHHHHHHHHhCCCceEEEeChhHHHHHHH
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPD-LKYAKEVADYLGTVHHEFHFTVQDGIDAIE 304 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~-~~~d-~~~A~~va~~lg~~~~~~~~~~~~~~~~l~ 304 (515)
++.+.+|||.||++++.++.+... ++..+.+... +.+| ..+++++++.+|++.+..... ......+.
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~----------~~~vv~~dtg~e~p~t~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~ 69 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGR----------KVPVVFIDTGYEFPETYEFVDELAKRYGIPIIVYRPP-ETFEQRFI 69 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHT----------TCEEEEEE-STB-HHHHHHHHHHHHHTTCEEEEEETT-SHHHHHHH
T ss_pred CeEEEecCCHHHHHHHHHHHHhcC----------CCcEEEEecCccCHHHHHHHHHHHhhhhhhhhhcccc-cchhhccc
Confidence 367899999999999999998763 3333333221 2234 478999999999985444332 22222221
Q ss_pred HHHHhhccCCCCcccc-hHH---HHHHHHHHHhCCCeEEEeccCcccc
Q 010213 305 EVIYHVETYDVTTIRA-STP---MFLMSRKIKSLGVKMVISGEGSDEI 348 (515)
Q Consensus 305 ~~~~~~e~~~~~~~~~-~~~---~~~l~~~a~~~g~~vlltG~GgDel 348 (515)
..-. +.. .... ... .--+.+..++.+..++++|.=+||=
T Consensus 70 ~~~~----~~~-~~~~~c~~~~K~~p~~~~~~~~~~~~~~~G~R~~Es 112 (174)
T PF01507_consen 70 LYGW----PSK-LWRWWCCSILKVKPLRRALKEYGKDVWIIGVRADES 112 (174)
T ss_dssp HHHH----STT-HHHHHHHHHHTHHHHHHHHHHTTESEEE----TTST
T ss_pred cccc----cch-hhhHHHHHHHHHHHHhhhhcchHHHHHHHHHHhhch
Confidence 1110 110 0000 000 1123344556677899999999884
|
PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A. |
| >COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0095 Score=60.38 Aligned_cols=110 Identities=21% Similarity=0.289 Sum_probs=58.4
Q ss_pred cccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC-CChH--HHHHHHH-HHhCCCceEEEeChhHH
Q 010213 224 TDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-SPDL--KYAKEVA-DYLGTVHHEFHFTVQDG 299 (515)
Q Consensus 224 ~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~-~~d~--~~A~~va-~~lg~~~~~~~~~~~~~ 299 (515)
+.+++-++||||+||-+-+.++-+.+ .+++.+++..++ ..+. .-+..++ ..+.-.++.+.+-.-++
T Consensus 174 t~Gk~l~LlSGGIDSPVA~~l~mkRG----------~~v~~v~f~~~p~~~~~a~~k~~~l~~~~~~~~~~~~~~~~v~f 243 (383)
T COG0301 174 TQGKVLLLLSGGIDSPVAAWLMMKRG----------VEVIPVHFGNPPYTSEKAREKVVALALLRLTSYGGKVRLYVVPF 243 (383)
T ss_pred cCCcEEEEEeCCCChHHHHHHHHhcC----------CEEEEEEEcCCCCchHHHHHHHHHHHhhhhcccCCceEEEEEch
Confidence 45677899999999999998887653 577777764433 2332 2222333 33332222222211122
Q ss_pred HHHHHHHHHhh-ccCCCCcccchHHHHHHH-HHHHhCCCeEEEeccCc
Q 010213 300 IDAIEEVIYHV-ETYDVTTIRASTPMFLMS-RKIKSLGVKMVISGEGS 345 (515)
Q Consensus 300 ~~~l~~~~~~~-e~~~~~~~~~~~~~~~l~-~~a~~~g~~vlltG~Gg 345 (515)
.+...++.... +.+.. +-.-..||.++ +.|.+.|+..+.||+.-
T Consensus 244 ~~v~~~i~~~~~~~y~~--v~~rR~M~riA~~iae~~g~~aIvtGEsL 289 (383)
T COG0301 244 TEVQEEILEKVPESYRC--VLLKRMMYRIAEKLAEEFGAKAIVTGESL 289 (383)
T ss_pred HHHHHHHHhhcCcccee--hHHHHHHHHHHHHHHHHhCCeEEEecCcc
Confidence 22222332222 22221 11122345444 46778899999999754
|
|
| >PRK12563 sulfate adenylyltransferase subunit 2; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.011 Score=58.50 Aligned_cols=108 Identities=18% Similarity=0.173 Sum_probs=66.1
Q ss_pred cceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC-CCh-HHHHHHHHHHhCCCceEEEeChhHHHHHH
Q 010213 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-SPD-LKYAKEVADYLGTVHHEFHFTVQDGIDAI 303 (515)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~-~~d-~~~A~~va~~lg~~~~~~~~~~~~~~~~l 303 (515)
.++++++|||.||++++.++.+.+... ..++..+++.... .+| ..+..++++.+|+++++... ++.+.
T Consensus 38 ~~~~v~~SgGKDS~VlLhLa~kaf~~~------~~~~pvl~VDTG~~FpEt~efrD~~a~~~gl~Liv~~~--~~~~~-- 107 (312)
T PRK12563 38 SKPVMLYSIGKDSVVMLHLAMKAFRPT------RPPFPLLHVDTTWKFREMIDFRDRRAKELGLDLVVHHN--PDGIA-- 107 (312)
T ss_pred CCcEEEecCChHHHHHHHHHHHhhccc------CCCeeEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEecC--hHHHH--
Confidence 346789999999999999999875321 1456677764322 244 57888999999998776542 22111
Q ss_pred HHHHHhhccCCC--CcccchHHHHHHHHHHHhCCCeEEEeccCccc
Q 010213 304 EEVIYHVETYDV--TTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 347 (515)
Q Consensus 304 ~~~~~~~e~~~~--~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDe 347 (515)
. ....+.. ...+...-...+.+.+.+.|.+++++|.--||
T Consensus 108 -~---G~~~~~~~~~~~c~~~Kv~pL~raL~~~g~da~itG~RRdE 149 (312)
T PRK12563 108 -R---GIVPFRHGSALHTDVAKTQGLKQALDHHGFDAAIGGARRDE 149 (312)
T ss_pred -h---CCCcccCCHHHHhhHHhHHHHHHHHHhcCCCEEEEecCHHH
Confidence 1 1111110 00111111234555566678999999988887
|
|
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0087 Score=66.90 Aligned_cols=133 Identities=22% Similarity=0.208 Sum_probs=87.8
Q ss_pred CEEEEEeeeeecCCC--CCCCceeeCCCcEEEEEeeEEcChH----HH--HH----------Hh---cCCCccCCChHHH
Q 010213 43 DFYLAHQRLAIIDPA--SGDQPLYNEDKKIVVTVNGEIYNHE----AL--RE----------RL---TNHKFRTGSDCDV 101 (515)
Q Consensus 43 ~~~l~h~rl~~~~~~--~~~qP~~~~~~~~~~~~nGei~n~~----~L--~~----------~l---~~~~~~~~~D~e~ 101 (515)
.++|.|+|.++.+.. .-+||+. ++.|||||...+ -. |+ ++ ....-...||+.-
T Consensus 285 ~~AlvHsRFSTNTfPsWdrAQPmR------~l~HNGEINTlrGN~NwMraREg~mks~~~~~e~~kl~Pive~~~SDSa~ 358 (2142)
T KOG0399|consen 285 HFALVHSRFSTNTFPSWDRAQPMR------FLAHNGEINTLRGNKNWMRAREGVMKSAVFKDELNKLLPIVEEGGSDSAA 358 (2142)
T ss_pred cceeeeeccccCCCCCccccccch------hhhccCceeeeccchhHHHHHHHhhhcchhhhhhhhhcccccCCCCchhh
Confidence 478899999998744 3579985 699999996322 11 11 11 0111123456532
Q ss_pred ---HHHHHHHHH---------------------------------HhhhhccccceEEEEEECCCCEEEEEecCCCccee
Q 010213 102 ---IAHLYEEYG---------------------------------ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSL 145 (515)
Q Consensus 102 ---i~~~~~~~G---------------------------------~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pL 145 (515)
+++++.+-| .-.++..+|.--+.+-|. +.+-+.=||-|.||.
T Consensus 359 lDnv~ElLvrsG~rslpEAvM~mVPEA~~nd~~~~~e~k~fYd~~a~~MEpWDGPALl~FsDG--ry~GA~LDRNGLRP~ 436 (2142)
T KOG0399|consen 359 LDNVLELLVRSGGRSLPEAVMMMVPEAWQNDKNMDPEKKAFYDWAACQMEPWDGPALLTFSDG--RYCGAILDRNGLRPA 436 (2142)
T ss_pred hhHHHHHHHHhCCCCcHHHHHHhChHHHhcCCCCCHHHHHHHHHHhhcCCCCCCceEEEecCC--ceeeeeeccCCCcce
Confidence 444444444 113566789888888887 677888899999999
Q ss_pred EEEEecCcEEEEEcCcccccccCCcc---eEeCCCeEEEec
Q 010213 146 YIGWGLDGSIWISSELKGLNDDCEHF---EAFPPGHLYSSK 183 (515)
Q Consensus 146 yy~~~~~~~~~faSe~~~l~~~~~~i---~~l~pG~~~~~~ 183 (515)
-|+.+.|+.++.|||+-.+--....| -+|.||.++.++
T Consensus 437 Ryy~Tsdd~v~~ASEVGvv~i~~~kVv~KgRL~PG~MllVD 477 (2142)
T KOG0399|consen 437 RYYITSDDRVICASEVGVVPIPPEKVVQKGRLKPGMMLLVD 477 (2142)
T ss_pred eeEEecCCEEEEeecccccCCCHHHhhhccCcCCCeEEEEE
Confidence 88888889999999987654322222 268899987654
|
|
| >PRK13795 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.022 Score=62.73 Aligned_cols=60 Identities=30% Similarity=0.387 Sum_probs=45.0
Q ss_pred ccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEee--cCCCChHHHHHHHHHHhCCCceEEEe
Q 010213 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG--LEGSPDLKYAKEVADYLGTVHHEFHF 294 (515)
Q Consensus 225 ~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~--~~~~~d~~~A~~va~~lg~~~~~~~~ 294 (515)
+.++.+.+|||.||++++.++.+.. .++..+.+. .......++++++++++|++++.+..
T Consensus 243 ~~~v~Va~SGGKDS~vll~L~~~a~----------~~~~vvfiDTg~efpet~e~v~~~~~~~gi~i~~~~~ 304 (636)
T PRK13795 243 NLPVSVSFSGGKDSLVVLDLAREAL----------KDFKAFFNNTGLEFPETVENVKEVAEEYGIELIEADA 304 (636)
T ss_pred CCCEEEEecCcHHHHHHHHHHHHhC----------CCcEEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEcc
Confidence 3579999999999999999998865 245555443 33223457899999999998777654
|
|
| >PRK13794 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.061 Score=57.10 Aligned_cols=60 Identities=22% Similarity=0.225 Sum_probs=44.0
Q ss_pred ccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEee--cCCCChHHHHHHHHHHhCCCceEEE
Q 010213 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG--LEGSPDLKYAKEVADYLGTVHHEFH 293 (515)
Q Consensus 225 ~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~--~~~~~d~~~A~~va~~lg~~~~~~~ 293 (515)
..++.+.+|||.||++++.++.+.+. .++..+.+. ++.....++++++++++|++.+.+.
T Consensus 247 ~~~v~vs~SGGKDS~v~L~L~~~~~~---------~~~~vvfiDTG~efpet~e~i~~~~~~~gl~i~~~~ 308 (479)
T PRK13794 247 NKPVTVAYSGGKDSLATLLLALKALG---------INFPVLFNDTGLEFPETLENVEDVEKHYGLEIIRTK 308 (479)
T ss_pred CCCEEEEecchHHHHHHHHHHHHHhC---------CCeEEEEEECCCCChHHHHHHHHHHHhcCCcEEEEc
Confidence 35789999999999999999887641 345555553 3322345678999999999876654
|
|
| >cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF) | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.014 Score=46.27 Aligned_cols=21 Identities=48% Similarity=0.624 Sum_probs=18.4
Q ss_pred eEEeecCCcchHHHHHHHHHH
Q 010213 228 FGVLLSGGLDSSLVASITARH 248 (515)
Q Consensus 228 v~v~LSGGlDSs~iaa~a~~~ 248 (515)
+.+.+|||.||+.++.++.+.
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~ 21 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRL 21 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHH
Confidence 457899999999999998875
|
The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide. |
| >TIGR00289 conserved hypothetical protein TIGR00289 | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.062 Score=50.80 Aligned_cols=60 Identities=27% Similarity=0.225 Sum_probs=41.4
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC-------CChHHHHHHHHHHhCCCceEEEeCh
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-------SPDLKYAKEVADYLGTVHHEFHFTV 296 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~-------~~d~~~A~~va~~lg~~~~~~~~~~ 296 (515)
++.+++|||.||+.-+..+.+.. ..+..+|+-..+ ..+...++..|+.+|++++.+..+.
T Consensus 2 kv~vl~SGGKDS~lAl~~~~~~~----------~V~~L~~~~~~~~~s~~~h~~~~~~~~~qA~algiPl~~~~~~~ 68 (222)
T TIGR00289 2 KVAVLYSGGKDSILALYKALEEH----------EVISLVGVFSENEESYMFHSPNLHLTDLVAEAVGIPLIKLYTSG 68 (222)
T ss_pred eEEEEecCcHHHHHHHHHHHHcC----------eeEEEEEEcCCCCCccccccCCHHHHHHHHHHcCCCeEEEEcCC
Confidence 36789999999999888776542 123333332111 2467889999999999988776543
|
Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group. |
| >KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.021 Score=55.07 Aligned_cols=56 Identities=20% Similarity=0.243 Sum_probs=46.1
Q ss_pred cceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCChHHHHHHHHHHhCCCceE
Q 010213 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHE 291 (515)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg~~~~~ 291 (515)
+.+..+.|||||+|.|++-+.+. |.++.+|......-.|.+.|++-|-..|..-..
T Consensus 6 ~~vVLAySGgLDTscil~WLkeq----------GyeViay~AnvGQ~edfe~ar~kAlk~Gakk~~ 61 (412)
T KOG1706|consen 6 KSVVLAYSGGLDTSCILAWLKEQ----------GYEVIAYLANVGQKEDFEEARKKALKSGAKKVV 61 (412)
T ss_pred ceEEEEecCCcCchhhhHHHHhc----------CceEEEeeccccchhhHHHHHHhhhhcCceEEE
Confidence 45668899999999999988875 378999987665667899999999999986443
|
|
| >TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin) | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.074 Score=50.15 Aligned_cols=58 Identities=7% Similarity=0.082 Sum_probs=42.0
Q ss_pred cceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC-CCh-HHHHHHHHHHhCCCceEEE
Q 010213 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-SPD-LKYAKEVADYLGTVHHEFH 293 (515)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~-~~d-~~~A~~va~~lg~~~~~~~ 293 (515)
.++.+.+|||.||++++.++.+.. +++..+.+.... .+| .++.+++++.++++...+.
T Consensus 14 ~~~~~s~SgGKDS~Vll~L~~~~~----------~~~~v~f~DTg~efpeT~efv~~~~~~~~l~i~~~~ 73 (212)
T TIGR00434 14 GHLVYSTSFGIQGAVLLDLVSKIS----------PDIPVIFLDTGYHFPETYELIDELTERYPLNIKVYK 73 (212)
T ss_pred CCEEEEecCCHHHHHHHHHHHhcC----------CCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEEC
Confidence 368999999999999999998765 355555554322 244 3578999999998755443
|
This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS. |
| >TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.13 Score=49.12 Aligned_cols=63 Identities=6% Similarity=0.016 Sum_probs=44.2
Q ss_pred ccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC-CCh-HHHHHHHHHHhCCCceEEEeCh
Q 010213 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-SPD-LKYAKEVADYLGTVHHEFHFTV 296 (515)
Q Consensus 225 ~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~-~~d-~~~A~~va~~lg~~~~~~~~~~ 296 (515)
..++.+..|||.||++++.++.+... +++..+.+.... .+| .+++.+++++++++.+.+...+
T Consensus 25 ~~~~~~s~S~Gkds~VlL~l~~~~~~---------~~i~vv~vDTg~~fpET~e~~d~~~~~~~~~l~v~~~~~ 89 (226)
T TIGR02057 25 PHGLVQTSAFGIQALVTLHLLSSISE---------PMIPVIFIDTLYHFPQTLTLKDELTKKYYQTLNLYKYDG 89 (226)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhhC---------CCCCEEEEeCCCCCHHHHHHHHHHHHHhCCceEEEEeCC
Confidence 34588999999999999999998751 345555554322 233 4789999999996555554444
|
Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite. |
| >PRK06850 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.22 Score=52.82 Aligned_cols=133 Identities=19% Similarity=0.206 Sum_probs=66.5
Q ss_pred HHHHHHHhh-ccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC-CCChH-HH-------HHHHHH
Q 010213 214 FENAVIKRL-MTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPDL-KY-------AKEVAD 283 (515)
Q Consensus 214 l~~aV~~rl-~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~-~~~d~-~~-------A~~va~ 283 (515)
+.+.++... ..+.|+.|.+|||-||++++.++.+.+...... ..-.+++.++...- ..++. .+ .+..|+
T Consensus 22 ~i~~i~~~Y~~~~~P~vV~fSGGKDStavL~Lv~~Al~~lp~e-~r~k~v~Vi~~DTgvE~Pe~~~~v~~~l~~i~~~a~ 100 (507)
T PRK06850 22 LIEEIQELYCADNRPWVIGYSGGKDSTAVLQLVWNALAGLPPE-KRTKPVYVISSDTLVENPVVVDWVNKSLERINEAAK 100 (507)
T ss_pred HHHHHHHHHhcCCCCeEEeCCCCchHHHHHHHHHHHHHhcchh-ccCCcEEEEECCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 334555544 456789999999999999998887664311000 00023444443211 12322 22 344567
Q ss_pred HhCCCceEEEeChhHHHHHHHHHHHhhccCCCC--cccchH------HH-HHHHHHHHhCCCeEEEeccCccccc
Q 010213 284 YLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVT--TIRAST------PM-FLMSRKIKSLGVKMVISGEGSDEIF 349 (515)
Q Consensus 284 ~lg~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~--~~~~~~------~~-~~l~~~a~~~g~~vlltG~GgDelf 349 (515)
..|++.....+.+..-.+.+..++- ..+..+ ..+... |+ -++.+..++.|-.++++|.=.||=.
T Consensus 101 ~~glpi~~~~v~P~~~~sFwv~liG--rG~P~Ps~~~RWCT~~LKI~P~~r~I~~~~~~~ge~v~vlGvR~~ES~ 173 (507)
T PRK06850 101 KQGLPITPHKLTPKINDTFWVNLIG--KGYPAPRRKFRWCTERLKIDPSNDFIKDKVSEFGEVIVVLGVRKAESA 173 (507)
T ss_pred HcCCceEEEeeCCCcchhHHHHHhc--CCCCCCCCCCccCCcHHHHhHHHHHHHHHHhhcCcEEEEEEeeccccH
Confidence 7788766554444321122223221 111111 122211 11 1233333455778999999888743
|
|
| >TIGR03183 DNA_S_dndC putative sulfurtransferase DndC | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.21 Score=52.18 Aligned_cols=123 Identities=21% Similarity=0.189 Sum_probs=61.2
Q ss_pred ccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC-CCChH-H-------HHHHHHHHhCCCceEEE
Q 010213 223 MTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPDL-K-------YAKEVADYLGTVHHEFH 293 (515)
Q Consensus 223 ~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~-~~~d~-~-------~A~~va~~lg~~~~~~~ 293 (515)
..+.|..|.+|||-||++++.++.+.+..... ....+.++.++...- ..++. . ..+..|+..|++.....
T Consensus 11 ~~~~p~vV~fSGGKDSta~L~Lv~~Al~~lp~-e~~~k~v~VI~~DTgvE~Pe~~~~v~~~l~~i~~~a~~~~lpi~~~~ 89 (447)
T TIGR03183 11 SDDIPWVVGYSGGKDSTAVLQLIWNALAALPA-EQRTKKIHVISTDTLVENPIVAAWVNASLERMQEAAQDQGLPIEPHR 89 (447)
T ss_pred hcCCceEEEeCCCHHHHHHHHHHHHHHHhccc-cccCcceEEEECcCCCccHHHHHHHHHHHHHHHHHHHHcCCCeEEEe
Confidence 35678899999999999999888776422100 000023444333211 12321 2 23456677787765544
Q ss_pred eChhHHHHHHHHHHHhhccCCC-CcccchH------HH-HHHHHHHHhCCCeEEEeccCccc
Q 010213 294 FTVQDGIDAIEEVIYHVETYDV-TTIRAST------PM-FLMSRKIKSLGVKMVISGEGSDE 347 (515)
Q Consensus 294 ~~~~~~~~~l~~~~~~~e~~~~-~~~~~~~------~~-~~l~~~a~~~g~~vlltG~GgDe 347 (515)
+.+..-.+.+..++- ...|.+ ...+... |+ -++.+.+++.|..++++|.=.||
T Consensus 90 v~P~~~~~Fwv~liG-rG~P~P~~~~RWCT~~LKI~P~~r~i~~~~~~~g~~v~vlGvR~~E 150 (447)
T TIGR03183 90 LTPEIKDTFWVNLIG-KGYPAPRQKFRWCTDRLKISPSNTFIRDVVAANGEVILVLGTRKAE 150 (447)
T ss_pred cCCCcchHHHHHHhc-CCCCCCCCCCCccChHHHhhHHHHHHHHHHhccCCeEEEEEeehhh
Confidence 444321222222221 111111 1112111 11 12334444567889999998887
|
Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase. |
| >KOG1622 consensus GMP synthase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.14 Score=52.05 Aligned_cols=71 Identities=24% Similarity=0.327 Sum_probs=52.2
Q ss_pred HHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEe--ecCCCChHHHHHHHHHHhCCCceEEEe
Q 010213 217 AVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCV--GLEGSPDLKYAKEVADYLGTVHHEFHF 294 (515)
Q Consensus 217 aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~--~~~~~~d~~~A~~va~~lg~~~~~~~~ 294 (515)
-+++++. +..+-+++|||.|||+.++++.+.+.. ..+++..+ |+-...|....++.-..+|++.+.+..
T Consensus 223 ~i~k~vG-~~~Vl~~vSGgvdStV~a~Ll~~alg~--------~R~~ai~vdNG~mrk~Ea~~V~~tl~~lgi~i~v~~a 293 (552)
T KOG1622|consen 223 EIRKWVG-DYKVLVAVSGGVDSTVCAALLRRALGP--------DRVHAIHVDNGFMRKKEAEQVEKTLVYLGIPITVVDA 293 (552)
T ss_pred HHHHHhc-ccceEEEecCCchHHHHHHHHHHhhCC--------CceEEEEecccchhhhHHHHHHHHHHHcCCceEEeec
Confidence 3445554 667889999999999999999988731 46777766 344456777777777779999888775
Q ss_pred Ch
Q 010213 295 TV 296 (515)
Q Consensus 295 ~~ 296 (515)
+.
T Consensus 294 s~ 295 (552)
T KOG1622|consen 294 SE 295 (552)
T ss_pred hH
Confidence 53
|
|
| >COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.27 Score=47.90 Aligned_cols=60 Identities=17% Similarity=0.277 Sum_probs=43.1
Q ss_pred ccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEee--cCCCChHHHHHHHHHHhCCCceEEEe
Q 010213 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVG--LEGSPDLKYAKEVADYLGTVHHEFHF 294 (515)
Q Consensus 225 ~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~--~~~~~d~~~A~~va~~lg~~~~~~~~ 294 (515)
..++.+..|||.||++++.++.+.. .++..+.+. +.-..-.+++.++++++|++..+...
T Consensus 39 ~~~~~~~~S~Gkds~V~l~L~~k~~----------~~~~vif~DTg~~f~Et~~~~d~~~~~~~~~l~~~~~ 100 (261)
T COG0175 39 SNPVVVSFSGGKDSTVLLHLAAKAF----------PDFPVIFLDTGYHFPETYEFRDRLAEEYGLDLKVYRP 100 (261)
T ss_pred CCCeEEEecCchhHHHHHHHHHHhc----------CCCcEEEEeCCCcCHHHHHHHHHHHHHcCCeEEEecC
Confidence 3457899999999999999999876 334455443 22222357899999999977655543
|
|
| >COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.69 Score=43.21 Aligned_cols=60 Identities=23% Similarity=0.234 Sum_probs=41.6
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCcee-eEEeecCC-------CChHHHHHHHHHHhCCCceEEEeCh
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLH-SFCVGLEG-------SPDLKYAKEVADYLGTVHHEFHFTV 296 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~-~~t~~~~~-------~~d~~~A~~va~~lg~~~~~~~~~~ 296 (515)
++.+++|||-||..-+..|-+.. ..+. .+++..+. .+....+...|+.+|+++.....+.
T Consensus 2 k~~aL~SGGKDS~~Al~~a~~~G----------~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g 69 (223)
T COG2102 2 KVIALYSGGKDSFYALYLALEEG----------HEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSG 69 (223)
T ss_pred cEEEEEecCcHHHHHHHHHHHcC----------CeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecCc
Confidence 36789999999987777776543 3443 33433222 2467889999999999977766554
|
|
| >PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.6 Score=44.09 Aligned_cols=59 Identities=22% Similarity=0.186 Sum_probs=34.7
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC-------CChHHHHHHHHHHhCCCceEEEeC
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-------SPDLKYAKEVADYLGTVHHEFHFT 295 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~-------~~d~~~A~~va~~lg~~~~~~~~~ 295 (515)
++.+++|||-||+.-+..|.+.. .-...+|+-.++ ..-....+..|+.+|+++..+.++
T Consensus 2 k~v~l~SGGKDS~lAl~~a~~~~----------~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~ 67 (218)
T PF01902_consen 2 KVVALWSGGKDSCLALYRALRQH----------EVVCLLTMVPEEEDSYMFHGVNIELIEAQAEALGIPLIEIPTS 67 (218)
T ss_dssp EEEEE--SSHHHHHHHHHHHHT-----------EEEEEEEEEESTTT-SSS-STTGTCHHHHHHHHT--EEEEEE-
T ss_pred cEEEEEcCcHHHHHHHHHHHHhC----------CccEEEEeccCCCCcccccccCHHHHHHHHHHCCCCEEEEEcc
Confidence 36788999999998777666542 122333432221 123457788899999999888876
|
The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D. |
| >COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.28 Score=48.35 Aligned_cols=44 Identities=23% Similarity=0.229 Sum_probs=32.8
Q ss_pred ccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC
Q 010213 223 MTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG 271 (515)
Q Consensus 223 ~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~ 271 (515)
..-..|+|.+|||-||++++.++++...+.+. .+|..+.+.+++
T Consensus 25 ~~f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~-----~~i~VlfiD~E~ 68 (407)
T COG3969 25 NTFPRVCVSFSGGKDSGLMLHLVAEVARENGR-----DKISVLFIDWEA 68 (407)
T ss_pred hcCCeEEEEecCCCchhHHHHHHHHHHHHhCC-----CceEEEEEcchh
Confidence 44567999999999999999999887654321 257777776654
|
|
| >TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain | Back alignment and domain information |
|---|
Probab=91.62 E-value=2.3 Score=40.32 Aligned_cols=57 Identities=18% Similarity=0.163 Sum_probs=38.3
Q ss_pred eEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC-------CChHHHHHHHHHHhCCCceEEEe
Q 010213 228 FGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-------SPDLKYAKEVADYLGTVHHEFHF 294 (515)
Q Consensus 228 v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~-------~~d~~~A~~va~~lg~~~~~~~~ 294 (515)
+.++.|||-||+.-+..|.+.. ..+..+|+-..+ .......+..|+.+|+++..+..
T Consensus 3 ~~~l~SGGKDS~~al~~a~~~~----------~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~ 66 (223)
T TIGR00290 3 VAALISGGKDSCLALYHALKEH----------EVISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKLYT 66 (223)
T ss_pred EEEEecCcHHHHHHHHHHHHhC----------eeEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEeec
Confidence 5688999999998877776542 233333432221 23557889999999999876543
|
Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein. |
| >KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=86.20 E-value=3.5 Score=42.87 Aligned_cols=69 Identities=29% Similarity=0.399 Sum_probs=41.0
Q ss_pred eEEeecCCcchHHHHHHHHHHhcc---------ccccc---------cCC---------CceeeEEeecCCCC-h-HHHH
Q 010213 228 FGVLLSGGLDSSLVASITARHLAG---------TKAAR---------QWG---------TQLHSFCVGLEGSP-D-LKYA 278 (515)
Q Consensus 228 v~v~LSGGlDSs~iaa~a~~~~~~---------~~~~~---------~~~---------~~i~~~t~~~~~~~-d-~~~A 278 (515)
.-+.||||+||+++|++....... +++.. ++- .-++|.-++.+++. | +.-|
T Consensus 352 fflPLSGG~DSsatA~iV~sMC~~V~~av~~g~eqv~~Dvr~i~~~~~~~p~dp~~l~nri~~TcyMgSenSS~ETr~ra 431 (706)
T KOG2303|consen 352 FFLPLSGGVDSSATAAIVYSMCRQVCKAVQSGDEQVLADVRRIVNDISYTPTDPADLCNRILYTCYMGSENSSKETRRRA 431 (706)
T ss_pred eEEecCCCccchHHHHHHHHHHHHHHHHHHcCchhhhhhhHHHhcCCCcCCCCHHHHHHhhhhhheeccccccHHHHHHH
Confidence 446799999999998875433211 01000 000 00223334444443 3 4679
Q ss_pred HHHHHHhCCCceEEEeCh
Q 010213 279 KEVADYLGTVHHEFHFTV 296 (515)
Q Consensus 279 ~~va~~lg~~~~~~~~~~ 296 (515)
+++|+.+|.-|..+.++.
T Consensus 432 k~La~~igs~H~~i~iD~ 449 (706)
T KOG2303|consen 432 KELANQIGSYHIDLNIDT 449 (706)
T ss_pred HHHHHhhcceeeeeeehH
Confidence 999999999998888764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 515 | ||||
| 1ct9_A | 553 | Crystal Structure Of Asparagine Synthetase B From E | 1e-156 | ||
| 1q15_A | 503 | Carbapenam Synthetase Length = 503 | 5e-13 | ||
| 1jgt_A | 513 | Crystal Structure Of Beta-Lactam Synthetase Length | 2e-07 | ||
| 1xff_A | 240 | Glutaminase Domain Of Glucosamine 6-Phosphate Synth | 3e-06 | ||
| 2j6h_A | 608 | E. Coli Glucosamine-6-p Synthase In Complex With Gl | 4e-06 | ||
| 1jxa_A | 608 | Glucosamine 6-Phosphate Synthase With Glucose 6-Pho | 4e-06 | ||
| 1ao0_A | 459 | Glutamine Phosphoribosylpyrophosphate (Prpp) Amidot | 4e-05 | ||
| 1gph_1 | 465 | Structure Of The Allosteric Regulatory Enzyme Of Pu | 4e-05 | ||
| 3ooj_A | 608 | C1a Mutant Of E. Coli Glms In Complex With Glucose- | 5e-05 |
| >pdb|1CT9|A Chain A, Crystal Structure Of Asparagine Synthetase B From Escherichia Coli Length = 553 | Back alignment and structure |
|
| >pdb|1Q15|A Chain A, Carbapenam Synthetase Length = 503 | Back alignment and structure |
|
| >pdb|1JGT|A Chain A, Crystal Structure Of Beta-Lactam Synthetase Length = 513 | Back alignment and structure |
|
| >pdb|1XFF|A Chain A, Glutaminase Domain Of Glucosamine 6-Phosphate Synthase Complexed With Glutamate Length = 240 | Back alignment and structure |
|
| >pdb|2J6H|A Chain A, E. Coli Glucosamine-6-p Synthase In Complex With Glucose-6p And 5-oxo-l-norleucine Length = 608 | Back alignment and structure |
|
| >pdb|1JXA|A Chain A, Glucosamine 6-Phosphate Synthase With Glucose 6-Phosphate Length = 608 | Back alignment and structure |
|
| >pdb|1AO0|A Chain A, Glutamine Phosphoribosylpyrophosphate (Prpp) Amidotransferase From B. Subtilis Complexed With Adp And Gmp Length = 459 | Back alignment and structure |
|
| >pdb|1GPH|1 Chain 1, Structure Of The Allosteric Regulatory Enzyme Of Purine Biosynthesis Length = 465 | Back alignment and structure |
|
| >pdb|3OOJ|A Chain A, C1a Mutant Of E. Coli Glms In Complex With Glucose-6p And Glutamate Length = 608 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 515 | |||
| 1ct9_A | 553 | Asparagine synthetase B; amidotransferase, substra | 0.0 | |
| 1q15_A | 503 | CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, | 0.0 | |
| 1jgt_A | 513 | Beta-lactam synthetase; asparagine synthetase, cla | 0.0 | |
| 1ao0_A | 459 | Glutamine phosphoribosylpyrophosphate amidotransfe | 3e-09 | |
| 3k32_A | 203 | Uncharacterized protein MJ0690; predicted subunit | 5e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 9e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-04 | |
| 1xff_A | 240 | D-fructose-6-, glucosamine--fructose-6-phosphate a | 8e-07 | |
| 2bpl_A | 608 | Glucosamine--fructose-6-phosphate aminotransferase | 8e-06 | |
| 1ecf_A | 504 | Glutamine phosphoribosylpyrophosphate amidotransf; | 3e-05 |
| >1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1 Length = 553 | Back alignment and structure |
|---|
Score = 680 bits (1755), Expect = 0.0
Identities = 281/512 (54%), Positives = 370/512 (72%), Gaps = 12/512 (2%)
Query: 3 GILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGDQP 62
I V D+ R + LELSR ++HRGPDWSG+Y + LAH+RL+I+D +G QP
Sbjct: 2 SIFGVFDIKTDAVELRKKALELSRLMRHRGPDWSGIYASDNAILAHERLSIVDVNAGAQP 61
Query: 63 LYNEDKKIVVTVNGEIYNHEALRERL-TNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMF 121
LYN+ K V+ VNGEIYNH+ALR ++F+TGSDC+VI LY+E G F+D L GMF
Sbjct: 62 LYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTGSDCEVILALYQEKGPEFLDDLQGMF 121
Query: 122 SFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYS 181
+F L D+ +++++ RD +GI LY+G+ G ++++SE+K L C + FP G
Sbjct: 122 AFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVCRTIKEFPAGSYLW 181
Query: 182 SKSGGLKRWYNPTWYS-EAIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSL 240
S+ G ++ +Y+ W+ +A+ D LRQA E++V LM+DVP+GVLLSGGLDSS+
Sbjct: 182 SQDGEIRSYYHRDWFDYDAVKDNVTDKNELRQALEDSVKSHLMSDVPYGVLLSGGLDSSI 241
Query: 241 VASITARHLA----GTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTV 296
+++IT ++ A + + W QLHSF VGL GSPDLK A+EVA++LGTVHHE HFTV
Sbjct: 242 ISAITKKYAARRVEDQERSEAWWPQLHSFAVGLPGSPDLKAAQEVANHLGTVHHEIHFTV 301
Query: 297 QDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFH 356
Q+G+DAI +VIYH+ETYDVTTIRASTPM+LMSRKIK++G+KMV+SGEGSDE+FGGYLYFH
Sbjct: 302 QEGLDAIRDVIYHIETYDVTTIRASTPMYLMSRKIKAMGIKMVLSGEGSDEVFGGYLYFH 361
Query: 357 KAPNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKM 416
KAPN +E H ET K+ ALH YDC RANK+ SAWG+EARVPFLDK F++VAM I+P+ KM
Sbjct: 362 KAPNAKELHEETVRKLLALHMYDCARANKAMSAWGVEARVPFLDKKFLDVAMRINPQDKM 421
Query: 417 INPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVTDK 476
G++EK ILR+ F+ YLP V +RQKEQFSDGVGYSWID LK A Q V+D+
Sbjct: 422 CG--NGKMEKHILRECFEA----YLPASVAWRQKEQFSDGVGYSWIDTLKEVAAQQVSDQ 475
Query: 477 MVQNAQYIFPHNTPLTKEAYYYRMIFERFFPQ 508
++ A++ FP+NTP +KEAY YR IFE FP
Sbjct: 476 QLETARFRFPYNTPTSKEAYLYREIFEELFPL 507
|
| >1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A* Length = 503 | Back alignment and structure |
|---|
Score = 592 bits (1529), Expect = 0.0
Identities = 105/543 (19%), Positives = 208/543 (38%), Gaps = 85/543 (15%)
Query: 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGD 60
M V+ D+ + R D G L++ L I+
Sbjct: 1 MSNSFCVVYKGSDTDINNI----------QRDFDGKGEA------LSNGYL-FIEQNGHY 43
Query: 61 QPLYNEDKKIVVTVNGEIYNHEALRERLT--NHKFRTGSDCDVIAHLYEEYGENFVDMLD 118
Q E + G +YN L + +D +++A L+ G N + + +
Sbjct: 44 QKCEMERGTAYL--IGSLYNRTFLIGLAGVWEGEAYLANDAELLALLFTRLGANALALAE 101
Query: 119 GMFSFVLLDTRDNSFIVARDAIGITSLYIGWG----------------LDGSIWISSELK 162
G F F + D + V ++ G + +++ G +G++W E
Sbjct: 102 GDFCFFI-DEPNGELTVITESRGFSPVHVVQGKKAWMTNSLKLVTAAEGEGALWFEEEAL 160
Query: 163 GLND--------DCEHFEAFPPGHLYSSKSGGLKRWYNPTWY-----SEAIPSTPYDPLV 209
++ + PG ++ + + S + + P +PL+
Sbjct: 161 VCQSLMRADTYTPVKNAQRLKPGAVHVLTHDSEGYSFVESRTLTTPASNQLLALPREPLL 220
Query: 210 --LRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCV 267
+ + + G+ LSGGLDSSLV ++ +RH +L+++ +
Sbjct: 221 ALIDRYLNAPLEDLAPRFDTVGIPLSGGLDSSLVTALASRH----------FKKLNTYSI 270
Query: 268 GLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLM 327
G E S + +++++VAD LGT H + + I+ I E IY+ E +D + + +F +
Sbjct: 271 GTELSNEFEFSQQVADALGTHHQMKILSETEVINGIIESIYYNEIFDGLSAEIQSGLFNV 330
Query: 328 SRKIKSLGVKMVISGEGSDEIFGGYL-YFHKAPNKEEFHRETCHKIKALHQYDCLRANKS 386
R+ + V +++G GSD +FGG L + N + E ++ ++ A
Sbjct: 331 YRQAQG-QVSCMLTGYGSDLLFGGILKPGAQYDNPNQLLAEQVYR----TRWTGEFATHG 385
Query: 387 TSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVL 446
S +G++ R PF I++ A+ P++K+ K ILR+ D + LPK ++
Sbjct: 386 ASCYGIDIRHPFWSHSLISLCHALHPDYKIF----DNEVKNILREYADSLQ--LLPKDIV 439
Query: 447 YRQKEQFSDGVGY--SWIDGLKAHAEQHVTDKMV--------QNAQYIFPHNTPLTKEAY 496
+R+K +G ++ + L + + + T + TP +
Sbjct: 440 WRKKIGIHEGSSVNQAFANVLGSTVDNYQTKSRFTYRVYQAFLRGRLSITDVTPSQLKDL 499
Query: 497 YYR 499
+
Sbjct: 500 IKK 502
|
| >1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A* Length = 513 | Back alignment and structure |
|---|
Score = 586 bits (1512), Expect = 0.0
Identities = 98/530 (18%), Positives = 179/530 (33%), Gaps = 66/530 (12%)
Query: 8 LGCSDDSQAKRVRVLELSRRLKHRGPDWS--GLYQHGDFYLAHQRLAIIDPA-------- 57
+G A + + GP ++ G + D + LA
Sbjct: 1 MGAPVLPAAFGFLASARTGGGRAPGPVFATRGSHTDIDTPQGERSLAATLVHAPSVAPDR 60
Query: 58 SGDQPLYNEDKKIVVTVNGEIYNHEALRERLTNHKFRTGSDCDVIAHLYEEYGENFVDML 117
+ + L V+ GEIYN + L L D +++ L E Y + ++
Sbjct: 61 AVARSLTGAPTTAVL--AGEIYNRDELLSVL-PAGPAPEGDAELVLRLLERYDLHAFRLV 117
Query: 118 DGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCE-------- 169
+G F+ V+ ++A D G LY G + S+E K L +
Sbjct: 118 NGRFATVVRTGD--RVLLATDHAGSVPLYTCVA-PGEVRASTEAKALAAHRDPKGFPLAD 174
Query: 170 --------HFEAFPPGHLYSSKSGGLKRWYNPTW---YSEAIPSTPYDPLVLRQAFENAV 218
P G + G + TW S I +R A E AV
Sbjct: 175 ARRVAGLTGVYQVPAGAVMDIDLGSGTAVTHRTWTPGLSRRILPEGEAVAAVRAALEKAV 234
Query: 219 IKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYA 278
+R+ V+LSGG+DSS VA+ R +L + +G + S + + A
Sbjct: 235 AQRVTPGDTPLVVLSGGIDSSGVAACAHRA----------AGELDTVSMGTDTSNEFREA 284
Query: 279 KEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKM 338
+ V D+L T H E + + + ++ E+ D I P+ + R + +
Sbjct: 285 RAVVDHLRTRHREITIPTTELLAQLPYAVWASESVDPDIIEYLLPLTALYRALDG-PERR 343
Query: 339 VISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPF 398
+++G G+D GG + P + L++ + + G P+
Sbjct: 344 ILTGYGADIPLGGMHREDRLPALDTVLAHDMATFDGLNEMSPVLST----LAGHWTTHPY 399
Query: 399 LDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVG 458
D++ +++ ++++ K +KW+LR A D LP + R K +G G
Sbjct: 400 WDREVLDLLVSLEAGLKRR----HGRDKWVLRAAMAD----ALPAETVNRPKLGVHEGSG 451
Query: 459 YSWIDGLKAHAEQHVTDKMVQNAQYIFPHNTPLTKEAYYYRMIFERFFPQ 508
+ + + V + + + P
Sbjct: 452 TTSSFS-RLLLDHGVAEDR-------VHEAKRQVVRELFDLTVGGGRHPS 493
|
| >1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1* Length = 459 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 3e-09
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 16/113 (14%)
Query: 61 QPLYNEDKK---IVVTVNGEIYNHEALRERLTN--HKFRTGSDCDVIAHLY-EEYGENFV 114
QPL + + + NG + N L+++L N F+T SD +V+AHL
Sbjct: 85 QPLLFRSQNNGSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVLAHLIKRSGHFTLK 144
Query: 115 D-------MLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSE 160
D ML G ++F+++ + IVA D G+ L IG + + ++SE
Sbjct: 145 DQIKNSLSMLKGAYAFLIMT--ETEMIVALDPNGLRPLSIGM-MGDAYVVASE 194
|
| >3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii} Length = 203 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 5e-09
Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 10/79 (12%)
Query: 229 GVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTV 288
VL SGG DSSL A I ++ G H + P K A+E A LG
Sbjct: 10 HVLFSGGKDSSLSAVI----------LKKLGYNPHLITINFGVIPSYKLAEETAKILGFK 59
Query: 289 HHEFHFTVQDGIDAIEEVI 307
H + A + +I
Sbjct: 60 HKVITLDRKIVEKAADMII 78
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 9e-08
Identities = 62/449 (13%), Positives = 130/449 (28%), Gaps = 110/449 (24%)
Query: 1 M--CG--ILAVLGCSDDSQAKRVRVLELSRRLKHRGPD---W--SGLYQHGDFYLAH-QR 50
+ G +A+ C +++ + W + L Q+
Sbjct: 158 VLGSGKTWVALDVCLSY-------------KVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204
Query: 51 L-AIIDPASGDQPLYNEDKKIVVTVNGEIYNHEALRERLTNH-KFRTGSDC-----DVIA 103
L IDP + ++ + +++ L K + +C +V
Sbjct: 205 LLYQIDPNWTSRSDHSSN---------IKLRIHSIQAELRRLLKSKPYENCLLVLLNV-- 253
Query: 104 HLYEEYGENFVDMLDGMFSF---VLLDTRDNS---FIVARDAIGITSLYIGWGLDG---- 153
+ F+ +LL TR F+ A I+ + L
Sbjct: 254 -----QNAKAWNA----FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 154 ---SIWISSELKGL-NDDCEHFEAFPPGHLY---SSKSGGLKRWYNPTW-------YSEA 199
++ + L + P L S GL W N W +
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTN----PRRLSIIAESIRDGLATWDN--WKHVNCDKLTTI 358
Query: 200 IPST--PYDPLVLRQAFENAVIKRLMTDVPFGVL--LSGGLDSSLVASITARHLAGTKAA 255
I S+ +P R+ F+ + +P +L + + S V + L
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN-KLHKYSLV 417
Query: 256 RQWGTQ----LHSFCVGLEGSPDLKYAKE---VADYLGTVHHEFHFTVQDGIDA-IEEVI 307
+ + + S + L+ + +YA V Y + + +D I
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 308 -YHVETYDVTTIRASTPM-FL----MSRKIKSLGVKMVISGEGSD-----EIFGGYLYFH 356
+H++ + M FL + +KI+ SG + + + Y+
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI--- 534
Query: 357 KAPNKEEFHRETCHKIKALHQY--DCLRA 383
N ++ R + L + + + +
Sbjct: 535 -CDNDPKYERLVNAILDFLPKIEENLICS 562
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 4e-04
Identities = 27/244 (11%), Positives = 73/244 (29%), Gaps = 77/244 (31%)
Query: 289 HH------EFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISG 342
HH E + +D + E+ V+ +D ++ K ++S
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAF--VDNFDCKDVQDMP--------------KSILSK 48
Query: 343 EGSDEIFGGYLYFHKAPNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLDKD 402
E D I + + L + L + + +
Sbjct: 49 EEIDHII-------MSKDAVS---------GTLRLFWTLLSKQEEMV-----------QK 81
Query: 403 FINVAMAIDPEWKMINPQEGRIEKWILRKAFDDE-ERPY-----LPKHVLYRQKEQFSDG 456
F+ + I+ ++ M + + + ++ + + ++ +R Y K+ + R +
Sbjct: 82 FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP----- 136
Query: 457 VGYSWIDGLKAHAEQHVTDKMVQNAQYIFPH------NTPLTKEAYYYRMIFERFFPQVI 510
L+ + ++ A+ + T + + + + ++
Sbjct: 137 -----YLKLRQALLE------LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 511 HLNL 514
LNL
Sbjct: 186 WLNL 189
|
| >1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A* Length = 240 | Back alignment and structure |
|---|
Score = 49.0 bits (118), Expect = 8e-07
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 17/93 (18%)
Query: 67 DKKIVVTVNGEIYNHEALRERLTN--HKFRTGSDCDVIAHLYEEY---GENFVD------ 115
+ IVV NG I NHE LRE L + F + +D +VIAHL G +
Sbjct: 90 SEHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAI 149
Query: 116 -MLDGMFSFVLLDTRD-NSFIVARD----AIGI 142
L G + V++D+R ++ + AR IG+
Sbjct: 150 PQLRGAYGTVIMDSRHPDTLLAARSGSPLVIGL 182
|
| >2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A* Length = 608 | Back alignment and structure |
|---|
Score = 47.4 bits (114), Expect = 8e-06
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 17/93 (18%)
Query: 67 DKKIVVTVNGEIYNHEALRERLTN--HKFRTGSDCDVIAHLYEEY---GENFVD------ 115
+ IVV NG I NHE LRE L + F + +D +VIAHL G +
Sbjct: 90 SEHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAI 149
Query: 116 -MLDGMFSFVLLDTRD-NSFIVARD----AIGI 142
L G + V++D+R ++ + AR IG+
Sbjct: 150 PQLRGAYGTVIMDSRHPDTLLAARSGSPLVIGL 182
|
| >1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine biosynthesis, transferase, glycosyltransferase, gluta amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A* Length = 504 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 3e-05
Identities = 27/125 (21%), Positives = 46/125 (36%), Gaps = 26/125 (20%)
Query: 61 QPLY-NEDKKIVVTVNGEIYNHEALRERLTNHK---FRTGSDCDVIAHL----------Y 106
QP Y N I + NG + N LR++L K T SD +++ ++ Y
Sbjct: 86 QPFYVNSPYGITLAHNGNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFASELDNFRHY 145
Query: 107 EEYGENFVD-------MLDGMFSFVLLDTRDNSFIVARDAIGITSLYIG----WGLDGSI 155
+N ++ G ++ V + + RD GI L +G
Sbjct: 146 PLEADNIFAAIAATNRLIRGAYACVAMIIGH-GMVAFRDPNGIRPLVLGKRDIDENRTEY 204
Query: 156 WISSE 160
++SE
Sbjct: 205 MVASE 209
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 515 | |||
| 1ct9_A | 553 | Asparagine synthetase B; amidotransferase, substra | 100.0 | |
| 1jgt_A | 513 | Beta-lactam synthetase; asparagine synthetase, cla | 100.0 | |
| 1q15_A | 503 | CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, | 100.0 | |
| 1ao0_A | 459 | Glutamine phosphoribosylpyrophosphate amidotransfe | 100.0 | |
| 1xff_A | 240 | D-fructose-6-, glucosamine--fructose-6-phosphate a | 100.0 | |
| 1ecf_A | 504 | Glutamine phosphoribosylpyrophosphate amidotransf; | 99.97 | |
| 2bpl_A | 608 | Glucosamine--fructose-6-phosphate aminotransferase | 99.97 | |
| 3mdn_A | 274 | Glutamine aminotransferase class-II domain protei; | 99.93 | |
| 1te5_A | 257 | Conserved hypothetical protein; glutamine amidotra | 99.87 | |
| 1ea0_A | 1479 | Glutamate synthase [NADPH] large chain; oxidoreduc | 99.58 | |
| 1ofd_A | 1520 | Ferredoxin-dependent glutamate synthase 2; oxidore | 99.56 | |
| 2e18_A | 257 | NH(3)-dependent NAD(+) synthetase; ligase, structu | 99.11 | |
| 3bl5_A | 219 | Queuosine biosynthesis protein QUEC; PREQ1 biosynt | 99.05 | |
| 1xng_A | 268 | NH(3)-dependent NAD(+) synthetase; amidotransferas | 99.03 | |
| 1kqp_A | 271 | NAD+ synthase, NH(3)-dependent NAD(+) synthetase, | 99.03 | |
| 3n05_A | 590 | NH(3)-dependent NAD(+) synthetase; ligase, structu | 98.96 | |
| 3k32_A | 203 | Uncharacterized protein MJ0690; predicted subunit | 98.94 | |
| 3fiu_A | 249 | NH(3)-dependent NAD(+) synthetase; rossman fold, a | 98.87 | |
| 3p52_A | 249 | NH(3)-dependent NAD(+) synthetase; structural geno | 98.83 | |
| 2pg3_A | 232 | Queuosine biosynthesis protein QUEC; YP_049261.1, | 98.82 | |
| 1wxi_A | 275 | NH(3)-dependent NAD(+) synthetase; NADE, E.coli, l | 98.8 | |
| 2dpl_A | 308 | GMP synthetase, GMP synthase [glutamine-hydrolyzin | 98.67 | |
| 2hma_A | 376 | Probable tRNA (5-methylaminomethyl-2-thiouridylat | 98.67 | |
| 1wy5_A | 317 | TILS, hypothetical UPF0072 protein AQ_1887; N-type | 98.66 | |
| 1vl2_A | 421 | Argininosuccinate synthase; TM1780, structural gen | 98.64 | |
| 2nz2_A | 413 | Argininosuccinate synthase; amino-acid biosynthesi | 98.64 | |
| 1kor_A | 400 | Argininosuccinate synthetase; ligase, riken struct | 98.63 | |
| 2der_A | 380 | TRNA-specific 2-thiouridylase MNMA; protein-RNA co | 98.54 | |
| 3q4g_A | 279 | NH(3)-dependent NAD(+) synthetase; structural geno | 98.51 | |
| 3sdb_A | 680 | Glutamine-dependent NAD(+) synthetase; glutamine-a | 98.47 | |
| 1k92_A | 455 | Argininosuccinate synthase, argininosuccinate SY; | 98.37 | |
| 3a2k_A | 464 | TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, | 98.32 | |
| 3dpi_A | 285 | NAD+ synthetase; ssgcid, decode, structural genomi | 98.31 | |
| 3tqi_A | 527 | GMP synthase [glutamine-hydrolyzing]; ligase; 2.84 | 98.25 | |
| 1gpm_A | 525 | GMP synthetase, XMP aminase; class I glutamine ami | 98.24 | |
| 2ywb_A | 503 | GMP synthase [glutamine-hydrolyzing]; GMP syntheta | 98.19 | |
| 3ilv_A | 634 | Glutamine-dependent NAD(+) synthetase; protein str | 98.15 | |
| 1sur_A | 215 | PAPS reductase; assimilatory sulfate reduction, 3- | 98.14 | |
| 2c5s_A | 413 | THII, probable thiamine biosynthesis protein THII; | 98.09 | |
| 2vxo_A | 697 | GMP synthase [glutamine-hydrolyzing]; proto-oncoge | 98.07 | |
| 1ni5_A | 433 | Putative cell cycle protein MESJ; structural genom | 98.01 | |
| 4f4h_A | 565 | Glutamine dependent NAD+ synthetase; structural ge | 97.95 | |
| 3uow_A | 556 | GMP synthetase; structural genomics consortium, SG | 97.95 | |
| 2o8v_A | 252 | Phosphoadenosine phosphosulfate reductase; disulfi | 97.78 | |
| 1zun_A | 325 | Sulfate adenylyltransferase subunit 2; beta barrel | 97.76 | |
| 2oq2_A | 261 | Phosphoadenosine phosphosulfate reductase; sulfate | 97.73 | |
| 1vbk_A | 307 | Hypothetical protein PH1313; structural genomics, | 97.44 | |
| 3rjz_A | 237 | N-type ATP pyrophosphatase superfamily; structural | 97.39 | |
| 2goy_A | 275 | Adenosine phosphosulfate reductase; iron sulfur cl | 96.87 | |
| 2wsi_A | 306 | FAD synthetase; transferase, nucleotidyltransferas | 96.18 | |
| 3fwk_A | 308 | FMN adenylyltransferase; FAD biosynthesis, alpha/b | 92.75 |
| >1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-101 Score=821.82 Aligned_cols=503 Identities=56% Similarity=0.972 Sum_probs=447.9
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEECCEEEEEeeeeecCCCCCCCceeeCCCcEEEEEeeEEcCh
Q 010213 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYNH 81 (515)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nGei~n~ 81 (515)
|||+|+++.+.........+..|+..|+|||||++|++..+++++||+||+|+|+..+.||+.+.+++++++|||||||+
T Consensus 1 CGI~G~~~~~~~~~~~~~~~~~m~~~l~hRGpD~~G~~~~~~~~lgh~Rlsi~~~~~~~QP~~~~~~~~~lv~NGeIyN~ 80 (553)
T 1ct9_A 1 ASIFGVFDIKTDAVELRKKALELSRLMRHRGPDWSGIYASDNAILAHERLSIVDVNAGAQPLYNQQKTHVLAVNGEIYNH 80 (553)
T ss_dssp CEEEEEESCCSCHHHHHHHHHHHHHTTGGGCBTEEEEEECSSEEEEEEECCCSCTTTCCSSEECTTSCEEEEEEEEETTH
T ss_pred CEEEEEEcCCCcchhHHHHHHHHHHHHhccCCCcccEEEECCEEEEEEeeeeeCCCCCCCCeEeCCCCEEEEEEEEEECH
Confidence 99999998654322235678899999999999999999999999999999999977789999998899999999999999
Q ss_pred HHHHHHh-cCCCccCCChHHHHHHHHHHHHHhhhhccccceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcC
Q 010213 82 EALRERL-TNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSE 160 (515)
Q Consensus 82 ~~L~~~l-~~~~~~~~~D~e~i~~~~~~~G~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe 160 (515)
.+|+++| ..+.|++.||||+|+++|++||.+++++|+|+|||++||.++++++++||++|+|||||+...++.++||||
T Consensus 81 ~eLr~~L~~~~~f~s~sDtEvil~l~~~~g~~~l~~l~G~fa~~i~d~~~~~l~~aRD~~G~~PLy~~~~~~~~~~faSe 160 (553)
T 1ct9_A 81 QALRAEYGDRYQFQTGSDCEVILALYQEKGPEFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASE 160 (553)
T ss_dssp HHHHHHHTTTSCCCSCCTTHHHHHHHHHHTTTTGGGCCEEEEEEEEETTTTEEEEEECTTCCSCCEEEECTTCCEEEESS
T ss_pred HHHHHHHhccCccCCCCcHHHHHHHHHHHHHHHHHhCCccEEEEEEECCCCEEEEEECCCCCCCeEEEEecCCEEEEeec
Confidence 9999999 337899999999999999999999999999999999999988999999999999999999743578999999
Q ss_pred cccccccCCcceEeCCCeEEEecCCceEEeeCCCCCcC-CCCCCCCcHHHHHHHHHHHHHHhhccccceEEeecCCcchH
Q 010213 161 LKGLNDDCEHFEAFPPGHLYSSKSGGLKRWYNPTWYSE-AIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSS 239 (515)
Q Consensus 161 ~~~l~~~~~~i~~l~pG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs 239 (515)
+++|...+++|++|+||+++.+.+++.++||++.+... ..++.++.+++++++|.+||++|+.+++|||++||||+|||
T Consensus 161 ~~al~~~~~~i~~l~pG~~~~~~~g~~~~yw~~~~~~~~~~~~~~~~~~~lr~~L~~aV~~rl~sdvpvgv~LSGGlDSS 240 (553)
T 1ct9_A 161 MKALVPVCRTIKEFPAGSYLWSQDGEIRSYYHRDWFDYDAVKDNVTDKNELRQALEDSVKSHLMSDVPYGVLLSGGLDSS 240 (553)
T ss_dssp GGGTTTTCSEEEECCTTEEEETTTCSEEECCCCGGGSHHHHTTCCCCHHHHHHHHHHHHHHHTCCSSCEEEECCSSHHHH
T ss_pred hHHHHhhcCCEEEECCCeEEEEcCCcEEEeecCCccccccCCCHHHHHHHHHHHHHHHHHHHhcCCCceEEeCCCCccHH
Confidence 99999989999999999999887777899999876431 23455778999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccc----cccCCCceeeEEeecCCCChHHHHHHHHHHhCCCceEEEeChhHHHHHHHHHHHhhccCCC
Q 010213 240 LVASITARHLAGTKA----ARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDV 315 (515)
Q Consensus 240 ~iaa~a~~~~~~~~~----~~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~~~~~~~e~~~~ 315 (515)
+|++++++...+... ...|.+++++||+++++++|..+|+++|+++|++|+++.++.+++.+.+++++++.+++++
T Consensus 241 ~iaala~~~~~~~~~~~~~~~a~~~~l~tfsig~~~~~E~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~~i~~~~~~~~ 320 (553)
T 1ct9_A 241 IISAITKKYAARRVEDQERSEAWWPQLHSFAVGLPGSPDLKAAQEVANHLGTVHHEIHFTVQEGLDAIRDVIYHIETYDV 320 (553)
T ss_dssp HHHHHHHHHC----------------CEEEEEESTTCHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHHHHHHCCCCH
T ss_pred HHHHHHHHhhccccccccccccccCceeEEEecCCCCcHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHHHHHHhcCCCc
Confidence 999999987632100 0001124899999999889999999999999999999999999998999999998888765
Q ss_pred CcccchHHHHHHHHHHHhCCCeEEEeccCccccccCCccccCCCChHHHHHHHHHHHHhhcccccccccccccccCceec
Q 010213 316 TTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEAR 395 (515)
Q Consensus 316 ~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~~~~~~~~~~~~~~~~~~~~~l~~~~l~r~d~~~~~~g~e~r 395 (515)
+.++..+++|++++.+++.|++|+|||+||||+||||.+|+..+....+..+..+++.+++.++++|.|+++|++|+|+|
T Consensus 321 ~~~~~~~~~~~l~~~a~~~g~~vvLsG~GaDElfgGY~~~~~~~~~~~~~~e~~~~l~~l~~~~l~r~Dr~~ma~glE~R 400 (553)
T 1ct9_A 321 TTIRASTPMYLMSRKIKAMGIKMVLSGEGSDEVFGGYLYFHKAPNAKELHEETVRKLLALHMYDCARANKAMSAWGVEAR 400 (553)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEECCTTHHHHHTCSGGGGGCCSHHHHHHHHHHHHHHGGGTHHHHHHHHHHTTTCEEE
T ss_pred ccchHHHHHHHHHHHHHHcCCeEEEECCCchhcccCcHhHhhCcchhhHHHHHHHHHHHHhhhcchhhhhHHhhcCceeE
Confidence 45555678899999999999999999999999999999998888888888888888999999999999999999999999
Q ss_pred cCCCCHHHHHHHHcCCccccccCCCCCcchhHHHHHhhccCCCCCCChhhhhcccCCCCCCCchhhHHHHHHHHHHhcCh
Q 010213 396 VPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVTD 475 (515)
Q Consensus 396 ~PflD~~lve~~~~lP~~~k~~~~~~~~~~K~lLR~a~~~~~~~~lP~~i~~R~K~~f~~~~~~~~~~~~~~~~~~~l~~ 475 (515)
+||||++|||||++||+++|+.++. ..+|+|||+||++ +||++|++|+|+||+.|++..|++.+++++++++++
T Consensus 401 ~PfLD~~lve~a~~lP~~~k~~~~g--~~~K~iLR~a~~~----~LP~~i~~R~K~~f~~p~~~~w~~~l~~~~~~~~~~ 474 (553)
T 1ct9_A 401 VPFLDKKFLDVAMRINPQDKMCGNG--KMEKHILRECFEA----YLPASVAWRQKEQFSDGVGYSWIDTLKEVAAQQVSD 474 (553)
T ss_dssp CGGGCHHHHHHHHHSCGGGTCC-----CCTTHHHHHHHGG----GSCHHHHTCCCCTTCCTTCHHHHHHHHHHHHHHSCH
T ss_pred CCcCCHHHHHHHhcCCHHHhccCCC--CcchHHHHHHHHh----hCCHHHHcCCCcCCCCCccHhHHHHHHHHHHHHhCh
Confidence 9999999999999999999998631 2489999999999 999999999999999999877998899999999999
Q ss_pred HHHHhcCccCCCCCCChHHHHHHHHHHhhhCCCcc
Q 010213 476 KMVQNAQYIFPHNTPLTKEAYYYRMIFERFFPQVI 510 (515)
Q Consensus 476 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (515)
+.+++.+...+.++|.|||+|||++||+++||+..
T Consensus 475 ~~~~~~~~~~~~~~p~~~e~~~~~~~f~~~~~~~~ 509 (553)
T 1ct9_A 475 QQLETARFRFPYNTPTSKEAYLYREIFEELFPLPS 509 (553)
T ss_dssp HHHHTHHHHCCSSCCCSHHHHHHHHHHHHHCCCHH
T ss_pred HHHHhhhhhcCCCCCCchhHHHHHHHHHHHCCcHH
Confidence 99999999999999999999999999999999854
|
| >1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-77 Score=632.86 Aligned_cols=387 Identities=23% Similarity=0.338 Sum_probs=329.7
Q ss_pred CCceeeCC----CcEEEEEeeEEcChHHHHHHhcCCCccCCChHHHHHHHHHHHHHhhhhccccceEEEEEECCCCEEEE
Q 010213 60 DQPLYNED----KKIVVTVNGEIYNHEALRERLTNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIV 135 (515)
Q Consensus 60 ~qP~~~~~----~~~~~~~nGei~n~~~L~~~l~~~~~~~~~D~e~i~~~~~~~G~~~~~~l~G~fa~v~~d~~~~~l~~ 135 (515)
.||+...+ ++++++|||||||+.+|+++|. +.|++.||||+|+++|++||.+++++++|+|||++||.+ ++++
T Consensus 57 ~QP~~~~~Pf~~~~~~lv~NGeIyN~~eLr~~L~-~~f~t~sDtEvil~l~~~~g~~~~~~l~G~fA~~i~d~~--~l~~ 133 (513)
T 1jgt_A 57 APDRAVARSLTGAPTTAVLAGEIYNRDELLSVLP-AGPAPEGDAELVLRLLERYDLHAFRLVNGRFATVVRTGD--RVLL 133 (513)
T ss_dssp CGGGGEEEECSSSSEEEEEEEEESCHHHHHHTSC-SSCCCSSHHHHHHHHHHHHGGGGGGTCCEEEEEEEEETT--EEEE
T ss_pred CCCcccCCcCCCCCEEEEEEEEEeCHHHHHHHhC-CCCCCCCHHHHHHHHHHHHhHHhHhhcCeeEEEEEEECC--EEEE
Confidence 68887543 7899999999999999999995 889999999999999999999999999999999999984 4999
Q ss_pred EecCCCcceeEEEEecCcEEEEEcCcccccccC----------------CcceEeCCCeEEEec--CCc--eEEeeCCCC
Q 010213 136 ARDAIGITSLYIGWGLDGSIWISSELKGLNDDC----------------EHFEAFPPGHLYSSK--SGG--LKRWYNPTW 195 (515)
Q Consensus 136 ~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~----------------~~i~~l~pG~~~~~~--~~~--~~~~~~~~~ 195 (515)
+||++|+|||||+.. ++.++||||+++|.... ++|++|+||+++.++ +++ .++||++..
T Consensus 134 aRD~~G~kPLyy~~~-~~~~~faSe~~aL~~~~~~~~~~l~~~~~~t~~~~i~~l~pG~~l~i~~~~g~~~~~~yw~~~~ 212 (513)
T 1jgt_A 134 ATDHAGSVPLYTCVA-PGEVRASTEAKALAAHRDPKGFPLADARRVAGLTGVYQVPAGAVMDIDLGSGTAVTHRTWTPGL 212 (513)
T ss_dssp EECTTCCSCCEEEEE-TTEEEEESCHHHHHTC--CCCCCCTTSEECSSCSSCEECCTTEEEEEETTTTEEEEEECCCCCC
T ss_pred EECCCCCceeEEEEe-CCEEEEcchHHHHHhccCcccccccCCCccccccceEEcCCCcEEEEEcCCCCEEEEeecCCcc
Confidence 999999999999975 78899999999998764 899999999999887 554 578998765
Q ss_pred CcCCCCCCCCcHHHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCChH
Q 010213 196 YSEAIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDL 275 (515)
Q Consensus 196 ~~~~~~~~~~~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d~ 275 (515)
.. ...+.++.+++++++|.++|++|+.++++++++||||+|||+|++++++.. .++++||+++++.+|.
T Consensus 213 ~~-~~~~~~~~~~~l~~~L~~aV~~rl~sd~~vgv~LSGGlDSS~vaala~~~~----------~~v~tfti~~~~~~E~ 281 (513)
T 1jgt_A 213 SR-RILPEGEAVAAVRAALEKAVAQRVTPGDTPLVVLSGGIDSSGVAACAHRAA----------GELDTVSMGTDTSNEF 281 (513)
T ss_dssp SC-BCCCHHHHHHHHHHHHHHHHHHHSCTTCCCEEECCSSHHHHHHHHHHHHHH----------SSCEEEEEECSSCCCH
T ss_pred cc-cCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCCcHHHHHHHHHHHHhC----------CCceEEEcCCCCCCHH
Confidence 42 222345567899999999999999999999999999999999999999875 4789999999988999
Q ss_pred HHHHHHHHHhCCCceEEEeChhHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccccCCccc
Q 010213 276 KYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 355 (515)
Q Consensus 276 ~~A~~va~~lg~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~~ 355 (515)
.+|+++|+++|++|+++.++++++.+.+++.+++.+.+++....+.+++|++++.+ +.|++|++||+||||+|+||.+|
T Consensus 282 ~~A~~vA~~lg~~h~~i~i~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~a-~~g~~VvltG~GaDElfgGY~~~ 360 (513)
T 1jgt_A 282 REARAVVDHLRTRHREITIPTTELLAQLPYAVWASESVDPDIIEYLLPLTALYRAL-DGPERRILTGYGADIPLGGMHRE 360 (513)
T ss_dssp HHHHHHHHHHTCEEEEEECCHHHHHTTHHHHHHHHCCCCHHHHHHHHHHHHHHHHC-CSSCCEEECCTTTHHHHTTTCCC
T ss_pred HHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHHHhCCCCcccchhHHHHHHHHHHH-HcCCCEEEeCCChhhcccCcccc
Confidence 99999999999999999999988888899988888876544444566778888777 67999999999999999999987
Q ss_pred cCCCChHHHHHHHHHHHHhhccccccccccccc----ccCceeccCCCCHHHHHHHHcCCccccccCCCCCcchhHHHHH
Q 010213 356 HKAPNKEEFHRETCHKIKALHQYDCLRANKSTS----AWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRK 431 (515)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~l~~~~l~r~d~~~~----~~g~e~r~PflD~~lve~~~~lP~~~k~~~~~~~~~~K~lLR~ 431 (515)
+....+..+ .+++++.++++ |+++| ++|+|+|+||||++|||||++||+++|++++. +|+|||+
T Consensus 361 ---~~~~~l~~e---~l~~l~~~~ll--Dr~sm~la~a~glE~R~PfLD~~lve~a~~lP~~~k~~~~~----~K~iLR~ 428 (513)
T 1jgt_A 361 ---DRLPALDTV---LAHDMATFDGL--NEMSPVLSTLAGHWTTHPYWDREVLDLLVSLEAGLKRRHGR----DKWVLRA 428 (513)
T ss_dssp ---SCCHHHHHH---HHHHHHHCTTC--CTTCTHHHHTTTCEEECGGGSHHHHHHHHHBCHHHHEETTE----ETHHHHH
T ss_pred ---CChhhcCHH---HHHHHhhccch--hhhhhhhhhhcCcceECCCCCHHHHHHHHcCCHHHhcCCCC----CHHHHHH
Confidence 333445544 34566667777 99999 99999999999999999999999999998864 8999999
Q ss_pred hhccCCCCCCChhhhhcccCCCCCCCchhhHHHHHHHH-HHhcChHHHHh
Q 010213 432 AFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHA-EQHVTDKMVQN 480 (515)
Q Consensus 432 a~~~~~~~~lP~~i~~R~K~~f~~~~~~~~~~~~~~~~-~~~l~~~~l~~ 480 (515)
||++ +||++|++|+|+||+.|++..|+ +++++ +++++++.+++
T Consensus 429 a~~~----~lP~~i~~R~K~gf~~p~~~~~~--l~~~~~~~~~~~~~~~~ 472 (513)
T 1jgt_A 429 AMAD----ALPAETVNRPKLGVHEGSGTTSS--FSRLLLDHGVAEDRVHE 472 (513)
T ss_dssp HHTT----TSCHHHHHSCCC---------CH--HHHHHHHHCCCTTSHHH
T ss_pred HHHh----hCCHHHHhCCcCCCCCChhHHHH--HHHHHHHhhcCHHHHHH
Confidence 9999 99999999999999999987887 67888 88787766554
|
| >1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-77 Score=631.88 Aligned_cols=425 Identities=22% Similarity=0.346 Sum_probs=350.8
Q ss_pred CEEEEEeeeeecCCCCCCCceeeCCCcEEEEEeeEEcChH---HHHHHhcCCCccCCChHHHHHHHHHHHHHhhhhcccc
Q 010213 43 DFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYNHE---ALRERLTNHKFRTGSDCDVIAHLYEEYGENFVDMLDG 119 (515)
Q Consensus 43 ~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nGei~n~~---~L~~~l~~~~~~~~~D~e~i~~~~~~~G~~~~~~l~G 119 (515)
.+++||+|++|.+ ..+.||+.+.+++++++ |||||+. +|+++|.| .|.+.||+|+|+++|++||.+++++++|
T Consensus 27 ~~~igh~R~~t~~-~~~~QP~~~~~~~~~l~--GeI~N~~~~~eLr~~l~g-~f~s~sDtEvil~l~~~~g~~~l~~l~G 102 (503)
T 1q15_A 27 GEALSNGYLFIEQ-NGHYQKCEMERGTAYLI--GSLYNRTFLIGLAGVWEG-EAYLANDAELLALLFTRLGANALALAEG 102 (503)
T ss_dssp EEEETTEEEEEET-TCCEEEEECSSSEEEEE--ECCSCHHHHHHHHTTTCG-GGGGCCHHHHHHHHHHHHCGGGGGGCCS
T ss_pred ceeEeeeeEEEcC-CCCCCCcCcCCCeEEEE--EEEeCCCChHHHHHHhhC-CCCCCChHHHHHHHHHHHHHHHHHHcCE
Confidence 4789999999975 46899999888888888 9999999 99999976 8999999999999999999999999999
Q ss_pred ceEEEEEECCCCEEEEEecCCCcceeEEEEecCcE-----------------EEEEcCccccccc--------CCcceEe
Q 010213 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGS-----------------IWISSELKGLNDD--------CEHFEAF 174 (515)
Q Consensus 120 ~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~-----------------~~faSe~~~l~~~--------~~~i~~l 174 (515)
+|||++||..++ ++++||++|+|||||+.. ++. ++||||+++|... +++|++|
T Consensus 103 ~fa~~i~d~~~~-l~~aRD~~G~rPL~y~~~-~~~~~t~~l~l~~~~~~~~~~~faSE~~al~~~~~~~~~T~~~~v~~l 180 (503)
T 1q15_A 103 DFCFFIDEPNGE-LTVITESRGFSPVHVVQG-KKAWMTNSLKLVTAAEGEGALWFEEEALVCQSLMRADTYTPVKNAQRL 180 (503)
T ss_dssp SEEEEEECTTSC-EEEEECSSSSSCCEEEES-SSEEEESCHHHHHHHHCTTSSCBCCHHHHTTCSCCCTTCCSBTTEEEC
T ss_pred EEEEEEEeCCCC-EEEEECCCCCeeEEEEEe-CCceecccccccccccCCcceEEecchHHHHhccCCCCCcccCCeEEE
Confidence 999999999877 999999999999999975 666 8999999999886 8999999
Q ss_pred CCCeEEEecCCc------eEEeeCCCCCcC-CCCCCCCcHHHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHH
Q 010213 175 PPGHLYSSKSGG------LKRWYNPTWYSE-AIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITAR 247 (515)
Q Consensus 175 ~pG~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~ 247 (515)
+||+++.++.++ .++||++..... ...+.++.+++++++|.+||++|+.+++|++++||||+|||+|++++++
T Consensus 181 ~pG~~~~i~~~g~~~~~~~~~yw~~~~~~~~~~~~~~~~~~~l~~~L~~aV~~rl~sd~~v~v~LSGGlDSs~vaala~~ 260 (503)
T 1q15_A 181 KPGAVHVLTHDSEGYSFVESRTLTTPASNQLLALPREPLLALIDRYLNAPLEDLAPRFDTVGIPLSGGLDSSLVTALASR 260 (503)
T ss_dssp CSSEEEEEEECTTCCEEEEEEESCCCCCCSCBCCCHHHHHHHHHHHHHHHHHHHGGGCSEEEEECCSSHHHHHHHHHHTT
T ss_pred CCCeEEEEeCCCcccccceeeecCCcccccccCCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCCCHHHHHHHHHHHH
Confidence 999998875432 678998765421 1223455678999999999999999999999999999999999999887
Q ss_pred HhccccccccCCCceeeEEeecCCCChHHHHHHHHHHhCCCceEEEeChhHHHHHHHHHHHhhccCCCCcccchHHHHHH
Q 010213 248 HLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLM 327 (515)
Q Consensus 248 ~~~~~~~~~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l 327 (515)
.. .++.+||+++++.+|..+|+++|+++|++|+++.++++++.+.+++.+++.+.+++....+..++|.+
T Consensus 261 ~~----------~~~~~~t~~~~~~~E~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l 330 (503)
T 1q15_A 261 HF----------KKLNTYSIGTELSNEFEFSQQVADALGTHHQMKILSETEVINGIIESIYYNEIFDGLSAEIQSGLFNV 330 (503)
T ss_dssp TC----------SEEEEEEEEETTBCCHHHHHHHHHHHTCEEEEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred hC----------CCcEEEEEeCCCccHHHHHHHHHHHhCCceEEEECCHHHHHHHHHHHHHHhcCCCcccchhHHHHHHH
Confidence 54 47899999999889999999999999999999999999888999999988887654444556778888
Q ss_pred HHHHHhCCCeEEEeccCccccccCCccc-cCCCChHHHHHHHHHHHHhhcccccccccccccccCceeccCCCCHHHHHH
Q 010213 328 SRKIKSLGVKMVISGEGSDEIFGGYLYF-HKAPNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINV 406 (515)
Q Consensus 328 ~~~a~~~g~~vlltG~GgDelf~Gy~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~r~d~~~~~~g~e~r~PflD~~lve~ 406 (515)
++.+ +.|++|++||+||||+|+||.+| ...+....+..+.++++. +++.|.|+++|++|+|+|+||||++||||
T Consensus 331 ~~~a-~~~~~VvltG~GaDElf~GY~~~~~~~~~~~~l~~e~~~r~~----~~L~r~Dr~~ma~glE~R~PfLD~~lve~ 405 (503)
T 1q15_A 331 YRQA-QGQVSCMLTGYGSDLLFGGILKPGAQYDNPNQLLAEQVYRTR----WTGEFATHGASCYGIDIRHPFWSHSLISL 405 (503)
T ss_dssp HHHH-BTTBSEEECCTTHHHHHTTTSCTTCCCSCHHHHHHHHHHHHH----HHSTTCCHHHHHTTCEEECTTCCHHHHHH
T ss_pred HHHH-HCCCCEEEeCCChhhhccChHHHHHhcCCHHHHhHHHHHHHH----HhhhhhhHHHHHcCCCEECCCCCHHHHHH
Confidence 8887 67899999999999999999988 445555555555555443 57889999999999999999999999999
Q ss_pred HHcCCccccccCCCCCcchhHHHHHhhccCCCCCCChhhhhcccCCCCCCCchhhHHHHHHHHHHhcChHHHHhcCccCC
Q 010213 407 AMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVTDKMVQNAQYIFP 486 (515)
Q Consensus 407 ~~~lP~~~k~~~~~~~~~~K~lLR~a~~~~~~~~lP~~i~~R~K~~f~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~ 486 (515)
|++||+++|+.++. +|+|||+||+++ ++||++|++|+|+||+.|++..|+- ..++. .- .
T Consensus 406 a~~lP~~~k~~~~~----~K~iLR~a~~~~--~~lP~~i~~R~K~gf~~~~~~~~~~------~~~~~--------~~-~ 464 (503)
T 1q15_A 406 CHALHPDYKIFDNE----VKNILREYADSL--QLLPKDIVWRKKIGIHEGSSVNQAF------ANVLG--------ST-V 464 (503)
T ss_dssp HHTBCGGGTEETTE----ESHHHHHHHHHT--SCSCHHHHCC---------CHHHHH------HHHHT--------SC-T
T ss_pred HHhCCHHHHhCCCC----cHHHHHHHHhcC--CcCCHHHhcCCCCCCCCCcchHHHH------HHHhc--------cc-c
Confidence 99999999998875 899999999872 1599999999999999999865541 11211 00 1
Q ss_pred CCCCChHHHHHHHHHHhhhCCCccc
Q 010213 487 HNTPLTKEAYYYRMIFERFFPQVIH 511 (515)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (515)
.+ .++|+.||| +||++.||++..
T Consensus 465 ~~-~~~k~~~~y-~~~~~~~~~~~~ 487 (503)
T 1q15_A 465 DN-YQTKSRFTY-RVYQAFLRGRLS 487 (503)
T ss_dssp TC-HHHHHHHHH-HHHHHHHTTSSC
T ss_pred cC-CCchhHHHH-HHHHHHcCCCCC
Confidence 11 467755555 699999999764
|
| >1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-36 Score=311.76 Aligned_cols=215 Identities=23% Similarity=0.372 Sum_probs=178.2
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEE---------------------------CCEEEEEeeeeec
Q 010213 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH---------------------------GDFYLAHQRLAII 54 (515)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~---------------------------~~~~l~h~rl~~~ 54 (515)
|||+|+++.+ . ....+..|+..|+|||||++|++.. +.+++||+|++|.
T Consensus 1 CGI~G~~~~~--~--~~~~~~~~l~~L~hRG~D~~Gi~~~~~~~~~~~k~~g~v~~~~~~~~l~~l~g~~~igH~R~at~ 76 (459)
T 1ao0_A 1 CGVFGIWGHE--E--APQITYYGLHSLQHRGQEGAGIVATDGEKLTAHKGQGLITEVFQNGELSKVKGKGAIGHVRYATA 76 (459)
T ss_dssp CEEEEEESCT--B--HHHHHHHHHHHTGGGCCSEEEEEEECSSCEEEEEEESCHHHHTTSSCTTTCCBSEEEEEEECCC-
T ss_pred CEEEEEECCc--c--hHHHHHHHHHHHHhcCCCcCCEEEEeCCeEEEEecCCcHhhhcchhhhhccCCCEEEEEEecCCC
Confidence 9999999764 2 2456778999999999999999876 3579999999999
Q ss_pred CCC--CCCCceee---CCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHH--------Hhhhhcccc
Q 010213 55 DPA--SGDQPLYN---EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG--------ENFVDMLDG 119 (515)
Q Consensus 55 ~~~--~~~qP~~~---~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~G--------~~~~~~l~G 119 (515)
|.. .++||+.. .+++++++|||+|||+.+|+++| .|+.|.+.||||+|+++|.+|| .+++++++|
T Consensus 77 g~~~~~n~qP~~~~~~~~g~~~l~hNG~I~N~~~Lr~~L~~~g~~f~~~sDsEvi~~l~~~~~~~~~~~a~~~~~~~l~G 156 (459)
T 1ao0_A 77 GGGGYENVQPLLFRSQNNGSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVLAHLIKRSGHFTLKDQIKNSLSMLKG 156 (459)
T ss_dssp ---CGGGSSSEEEBCTTTCCEEEEEEEEETTHHHHHHHHHHTTCCCCSSCHHHHHHHHHHTCCCSSHHHHHHHHHTTCCE
T ss_pred CCCCccCCCCceeccCCCCcEEEEEEEEecCHHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhcc
Confidence 864 58999986 56889999999999999999999 6899999999999999999987 789999999
Q ss_pred ceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcCccccccc-CCcceEeCCCeEEEecCCc--eEEeeCCCCC
Q 010213 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGG--LKRWYNPTWY 196 (515)
Q Consensus 120 ~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~--~~~~~~~~~~ 196 (515)
+|||++||. ++++++||++|+|||||+.. ++.++||||.++|... .+.|+.|+||+++.++.++ ..+||++...
T Consensus 157 ~fa~~i~d~--~~l~~~RD~~G~rPL~~~~~-~~~~~~ASE~~al~~~~~~~i~~l~pG~~~~i~~~~~~~~~~~~~~~~ 233 (459)
T 1ao0_A 157 AYAFLIMTE--TEMIVALDPNGLRPLSIGMM-GDAYVVASETCAFDVVGATYLREVEPGEMLIINDEGMKSERFSMNINR 233 (459)
T ss_dssp EEEEEEECS--SEEEEEECTTCCSCCEEEEE-TTEEEEESSTHHHHHHTCEEEEECCTTEEEEEETTEEEEEESCSSCCC
T ss_pred ceEEEEEeC--CEEEEEECCCCCCCeEEEec-CCEEEEEECchHHhcCCCceEEEECCCEEEEEECCceEEEecCCCccc
Confidence 999999995 89999999999999999986 6789999999999875 6789999999999887665 4568865321
Q ss_pred --------cCCCCC---CCCcHHHHHHHHHHHHHHhhc
Q 010213 197 --------SEAIPS---TPYDPLVLRQAFENAVIKRLM 223 (515)
Q Consensus 197 --------~~~~~~---~~~~~~~l~~~l~~aV~~rl~ 223 (515)
....|. ..+.+.+.+..+.+.+.+.+.
T Consensus 234 ~~c~feyiyfarp~s~~~~~~v~~~r~~lg~~La~~~~ 271 (459)
T 1ao0_A 234 SICSMEYIYFSRPDSNIDGINVHSARKNLGKMLAQESA 271 (459)
T ss_dssp CEEHHHHHTTSCTTCEETTEEHHHHHHHHHHHHHHHHC
T ss_pred cccceeeeeccCCcchhccHhHHHHHHHHHHHHHHhcc
Confidence 011222 344577888888888888664
|
| >1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-35 Score=280.37 Aligned_cols=179 Identities=32% Similarity=0.445 Sum_probs=158.6
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceE-EE---------------------------CCEEEEEeeeee
Q 010213 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLY-QH---------------------------GDFYLAHQRLAI 53 (515)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~-~~---------------------------~~~~l~h~rl~~ 53 (515)
|||+|+++.+.. ...+..|+..|+|||||+.|++ .. +.+++||+|++|
T Consensus 1 CGI~G~~~~~~~----~~~l~~~l~~l~~RG~D~~Gi~~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~igH~R~at 76 (240)
T 1xff_A 1 CGIVGAIAQRDV----AEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWAT 76 (240)
T ss_dssp CEEEEEECSSCC----HHHHHHHHHHHGGGCCSEEEEEEECTTCCEEEEEEESCHHHHHHHHHHSCCCCSEEEEEEECCS
T ss_pred CcEEEEEcCcch----HHHHHHHHHHHHhcCCCcCCEEEEecCCcEEEEEcCCcHHHHHhhhhcccCCccEEEEEEeccC
Confidence 999999986532 2567899999999999999998 52 468999999999
Q ss_pred cCC--CCCCCceeeCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHHH----------hhhhcccc
Q 010213 54 IDP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYGE----------NFVDMLDG 119 (515)
Q Consensus 54 ~~~--~~~~qP~~~~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~G~----------~~~~~l~G 119 (515)
.|. ..++||+.+ ++++++|||+|||+.+|+++| .|+.|.+.||||+|+++|++++. +++++++|
T Consensus 77 ~g~~~~~n~qP~~~--~~~~l~hNG~I~N~~~lr~~L~~~g~~f~~~sDsEvi~~l~~~~~~~g~~~~~ai~~~~~~l~G 154 (240)
T 1xff_A 77 HGEPSEVNAHPHVS--EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRG 154 (240)
T ss_dssp SSCSSTTTSSCEEE--TTEEEEEEEEETTHHHHHHHHHHTTCCCCSCCSHHHHHHHHHHHHHTSSCHHHHHHHHGGGCCE
T ss_pred CCCCCcccCCCccc--CCEEEEEEEEECCHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccc
Confidence 985 358999987 789999999999999999999 68999999999999999999864 78999999
Q ss_pred ceEEEEEECC-CCEEEEEecCCCcceeEEEEecCcEEEEEcCcccccccCCcceEeCCCeEEEecCCceEEe
Q 010213 120 MFSFVLLDTR-DNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLKRW 190 (515)
Q Consensus 120 ~fa~v~~d~~-~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~~~~ 190 (515)
+|||++||.. .++++++||+ |||||+.. ++.++||||+++|.....++..|+||+++.++.++++.+
T Consensus 155 ~fa~~i~d~~~~~~l~~~Rd~---~PL~~~~~-~~~~~~aSE~~al~~~~~~~~~l~pG~~~~i~~~~~~~~ 222 (240)
T 1xff_A 155 AYGTVIMDSRHPDTLLAARSG---SPLVIGLG-MGENFIASDQLALLPVTRRFIFLEEGDIAEITRRSVNIF 222 (240)
T ss_dssp EEEEEEEETTCTTCEEEEEEB---SCCEEEEC-SSCEEEESSGGGTTTTCSEEEECCTTCEEEECSSCEEEE
T ss_pred ceEEEEEecCCCCEEEEEECC---CceEEEEe-CCEEEEEECHHHHHhhCCeEEEECCCEEEEEECCeEEEE
Confidence 9999999975 5899999998 99999985 678999999999998888899999999999887765544
|
| >1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine biosynthesis, transferase, glycosyltransferase, gluta amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-31 Score=278.52 Aligned_cols=179 Identities=22% Similarity=0.386 Sum_probs=152.3
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEEC----------------------------CEEEEEeeeee
Q 010213 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG----------------------------DFYLAHQRLAI 53 (515)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~----------------------------~~~l~h~rl~~ 53 (515)
|||+|+++.+.. ...+..|+..|+|||||++|++..+ ++++||+|++|
T Consensus 1 CGI~G~~~~~~~----~~~l~~~l~~LqhRG~D~aGi~~~~~~~~~~~~k~~g~v~~vf~~~~~~~l~g~~~igH~R~sT 76 (504)
T 1ecf_A 1 CGIVGIAGVMPV----NQSIYDALTVLQHRGQDAAGIITIDANNCFRLRKANGLVSDVFEARHMQRLQGNMGIGHVRYPT 76 (504)
T ss_dssp CEEEEEECSSCC----HHHHHHHHHHTGGGCCSEEEEEEECTTSCEEEEEEESCHHHHCCHHHHHHCCSSEEEEEEECCB
T ss_pred CEEEEEEcChhH----HHHHHHHHHHHHhcCCCcceEEEEcCCCcEEEEecCCchhhhcCccccccCCCCEEEEEEccCc
Confidence 999999976421 3457889999999999999999763 47999999999
Q ss_pred cCCC--CCCCceeeC-CCcEEEEEeeEEcChHHHHHHh--c-CCCccCCChHHHHHHHHHHH----HH------------
Q 010213 54 IDPA--SGDQPLYNE-DKKIVVTVNGEIYNHEALRERL--T-NHKFRTGSDCDVIAHLYEEY----GE------------ 111 (515)
Q Consensus 54 ~~~~--~~~qP~~~~-~~~~~~~~nGei~n~~~L~~~l--~-~~~~~~~~D~e~i~~~~~~~----G~------------ 111 (515)
.|.. .++|||... +++++++|||+|||+.+|+++| . +..|.+.||||+|+++|.++ |.
T Consensus 77 ~G~~~~~n~QP~~~~~~~~~~l~hNG~i~N~~eLr~~L~~~g~~~f~s~sDsEvi~~l~~~~~~~~g~~~~~~~~~~~a~ 156 (504)
T 1ecf_A 77 AGSSSASEAQPFYVNSPYGITLAHNGNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFASELDNFRHYPLEADNIFAAI 156 (504)
T ss_dssp TTBCTTSCCSCEEECSSSCEEEEEEEEETTHHHHHHHHHHHHCCCCCSSCHHHHHHHHHHHHHTTCCSSSCCHHHHHHHH
T ss_pred CCCCCccccCCeEeccCCCEEEEEeeeecCHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHhccccccccccHHHHH
Confidence 9964 589999864 3569999999999999999999 2 47899999999999999886 21
Q ss_pred -hhhhccccceEEEEEECCCCEEEEEecCCCcceeEEEEec--C--cEEEEEcCccccccc-CCcceEeCCCeEEEecCC
Q 010213 112 -NFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGL--D--GSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSG 185 (515)
Q Consensus 112 -~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~--~--~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~ 185 (515)
+++++++|+||+++|+.. ++++++||++|+|||||+... + +.++||||.++|... ++.|+.|+||+++.++.+
T Consensus 157 ~~~~~~l~G~fa~v~~~~~-~~l~a~RD~~GirPL~~g~~~~~~g~~~~~~ASE~~al~~~~~~~v~~l~PGe~v~i~~~ 235 (504)
T 1ecf_A 157 AATNRLIRGAYACVAMIIG-HGMVAFRDPNGIRPLVLGKRDIDENRTEYMVASESVALDTLGFDFLRDVAPGEAIYITEE 235 (504)
T ss_dssp HHHHHHCCEEEEEEEEETT-TEEEEEECTTCCSCCEEEEEECSSSCEEEEEESSTHHHHHHTCEEEEECCTTEEEEEETT
T ss_pred HHhhhhcCccceEEEEEcC-CeEEEEECCCCCCceEEeecccCCCceEEEEEeCchHhhccCccEEEECCCCeEEEEeCC
Confidence 578999999999999753 589999999999999999852 3 479999999999875 567999999999887643
|
| >2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.9e-31 Score=284.58 Aligned_cols=176 Identities=33% Similarity=0.464 Sum_probs=157.1
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEE----------------------------CCEEEEEeeeee
Q 010213 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQH----------------------------GDFYLAHQRLAI 53 (515)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~----------------------------~~~~l~h~rl~~ 53 (515)
|||+|+++.+.. ...+..|+..|+|||||+.|++.. +.+++||+||+|
T Consensus 1 CGI~G~~~~~~~----~~~l~~~l~~l~~RG~D~~Gi~~~~~~~~~~~~k~~g~~~~l~~~l~~~~~~~~~~igH~R~at 76 (608)
T 2bpl_A 1 CGIVGAIAQRDV----AEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWAT 76 (608)
T ss_dssp CEEEEEECSSCC----HHHHHHHHHHHGGGCCSEEEEEEECTTCCEEEEEEESSHHHHHHHHHHSCCCCSEEEEEEECCC
T ss_pred CeEEEEEcCCch----HHHHHHHHHHHHhcCCCcCceEEEecCCcEEEEeCCCcHHHHHHHhhccCCCCCEEEEEEccCC
Confidence 999999986532 346789999999999999999976 357999999999
Q ss_pred cCCC--CCCCceeeCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHH---HH-------hhhhcccc
Q 010213 54 IDPA--SGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEY---GE-------NFVDMLDG 119 (515)
Q Consensus 54 ~~~~--~~~qP~~~~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~---G~-------~~~~~l~G 119 (515)
.|.. .++||+.+ ++++++|||+|||+.+|+++| .|+.|.+.||||+|+++|++| |. +++++++|
T Consensus 77 ~g~~~~~n~qP~~~--~~~~lvhNG~I~N~~~Lr~~L~~~g~~f~s~tDtEvi~~l~~~~~~~g~~~~~av~~~~~~l~G 154 (608)
T 2bpl_A 77 HGEPSEVNAHPHVS--EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRG 154 (608)
T ss_dssp SSSCCGGGCSCEEE--TTEEEEEEECCTTHHHHHHHHHHHTCCCSCCCHHHHHHHHHHHHHTTCCCHHHHHHHHGGGCCS
T ss_pred CCCCCccCCCCccC--CCEEEEEEEEEeCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcC
Confidence 9853 58999998 789999999999999999999 689999999999999999988 73 68999999
Q ss_pred ceEEEEEECCC-CEEEEEecCCCcceeEEEEecCcEEEEEcCcccccccCCcceEeCCCeEEEecCCce
Q 010213 120 MFSFVLLDTRD-NSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGL 187 (515)
Q Consensus 120 ~fa~v~~d~~~-~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~ 187 (515)
+|||++||..+ ++++++||+ |||||+.. ++.++||||+++|....+.+..|+||+++.++.+++
T Consensus 155 ~fa~~i~d~~~~~~l~~aRd~---~PL~~g~~-~~~~~~aSe~~al~~~~~~~~~l~~G~i~~i~~~~~ 219 (608)
T 2bpl_A 155 AYGTVIMDSRHPDTLLAARSG---SPLVIGLG-MGENFIASDQLALLPVTRRFIFLEEGDIAEITRRSV 219 (608)
T ss_dssp SEEEEEEETTCTTCEEEEEEB---SCCEEEEC-SSCEEEESSGGGTTTTCCEEEECCTTCEEEECSSCE
T ss_pred ceEEEEEecCCCCEEEEEECC---CceEEEEe-CCeEEEEechHHHHhcCCeEEEECCCeEEEEECCeE
Confidence 99999999987 899999998 99999985 678999999999998888999999999988775544
|
| >3mdn_A Glutamine aminotransferase class-II domain protei; structural genomics, PSI-2, protein structure initiative; 2.09A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-26 Score=223.22 Aligned_cols=142 Identities=19% Similarity=0.247 Sum_probs=109.8
Q ss_pred CEEEEEeeeeecCC--CCCCCceeeCCCcEEEEEeeEEcChHHHHHHh--cC--CCc---cCCChHHHHHHHHHHHHH--
Q 010213 43 DFYLAHQRLAIIDP--ASGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TN--HKF---RTGSDCDVIAHLYEEYGE-- 111 (515)
Q Consensus 43 ~~~l~h~rl~~~~~--~~~~qP~~~~~~~~~~~~nGei~n~~~L~~~l--~~--~~~---~~~~D~e~i~~~~~~~G~-- 111 (515)
.+++||+|++|.|. ..++|||.. ++++++|||+|+|+.+|+++| .| +.| .++||||+|+++|.++|.
T Consensus 82 ~~~igHvR~AT~g~~s~~n~qPf~~--g~~~~~HNG~I~N~~~Lr~~L~~~g~~~~f~~~~~~TDSEvi~~l~~~~~~~~ 159 (274)
T 3mdn_A 82 GLFLSHVRASTGSCISRNNCHPFAA--RRWCFMHNGQVGGFEAFRKQADMAIADEFYTYRKGSTDSEVLFLLALSEGLEH 159 (274)
T ss_dssp EEEEEEC------------CCCEEE--TTEEEEEEEEETTGGGGHHHHHHTSCHHHHTTCCSCCHHHHHHHHHHHTTTTT
T ss_pred CEEEEEEccccCCCCcccCCCCccc--CCEEEEEeeEEcCHHHHHHHHHhhCCcceecCCCCCChHHHHHHHHHHhhhcC
Confidence 36899999999985 368999987 679999999999999999999 44 334 689999999999988774
Q ss_pred -------hhhhccccc-----------eEEEEEECCCCEEEEEecC-CCcceeEEEEecC--cEEEEEcCcccccccCCc
Q 010213 112 -------NFVDMLDGM-----------FSFVLLDTRDNSFIVARDA-IGITSLYIGWGLD--GSIWISSELKGLNDDCEH 170 (515)
Q Consensus 112 -------~~~~~l~G~-----------fa~v~~d~~~~~l~~~rD~-~G~~pLyy~~~~~--~~~~faSe~~~l~~~~~~ 170 (515)
+++++++|+ |+++++|. ++|+++||+ +|++||+|+...+ +.++||||. |......
T Consensus 160 ~~~~al~~~l~~l~G~~~~~g~~~~~a~~~~~~d~--~~l~a~Rd~~~G~~Pll~~~~~~~~~~~~vASE~--l~~~~~~ 235 (274)
T 3mdn_A 160 DPHGALARAIARLEGLSRAHGTTPHMRLSAAFSDG--QTLYAARYSSDHIAPSVYYRYSHARQGWAVVSEP--LETDEGD 235 (274)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCSSSEEEEEEEECS--SCEEEEEEESSSCCCCCEEEEETTTTEEEEESSC--C--CCSC
T ss_pred CHHHHHHHHHHHHHhHHhhcCcccCceEEEEEEcC--CEEEEEECCCCCCCCeEEEEEeCCCCEEEEEecc--cccCCce
Confidence 688999998 99999987 799999998 9999965555433 689999998 4334467
Q ss_pred ceEeCCCeEEEecCCceEEe
Q 010213 171 FEAFPPGHLYSSKSGGLKRW 190 (515)
Q Consensus 171 i~~l~pG~~~~~~~~~~~~~ 190 (515)
++.|+||+++.++.++++.+
T Consensus 236 ~~~v~pGeiv~i~~~~v~~~ 255 (274)
T 3mdn_A 236 WTELRPGRMLTIGAEGAAER 255 (274)
T ss_dssp CEECCSSEEEEEETTEEEEE
T ss_pred EEEECcCEEEEEeCCeEEEE
Confidence 99999999999887776543
|
| >1te5_A Conserved hypothetical protein; glutamine amidotransferase, amidotransferase, structural genomics, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa PAO1} SCOP: d.153.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=5.6e-23 Score=198.25 Aligned_cols=174 Identities=17% Similarity=0.148 Sum_probs=134.3
Q ss_pred CeEEEEEEcCCCCchHHHHHHHHHHHhcccCC------CCCCceEEEC-----------------------------CEE
Q 010213 1 MCGILAVLGCSDDSQAKRVRVLELSRRLKHRG------PDWSGLYQHG-----------------------------DFY 45 (515)
Q Consensus 1 McGI~G~~~~~~~~~~~~~~~~~~~~~l~~RG------pd~~g~~~~~-----------------------------~~~ 45 (515)
||||+|+++... .. +...+..|+||| +|+.|+...+ .++
T Consensus 1 MCgi~G~~~~~~-~~-----~~~gL~~Lq~RG~~~~~~~DgaGIa~~~~~~~~~~k~~g~v~~~~~~~~l~~~~l~g~~~ 74 (257)
T 1te5_A 1 MCELLGMSANVP-TD-----IVFSFTGLMQRGGGTGPHRDGWGIAFYEGRGVRLFQDPLASVDSEVARLVQRFPIKSETV 74 (257)
T ss_dssp -CCEEEEEEEEE-EE-----CEEEECCCCCCSSSSSSSBCEEEEEEEETTEEEEEEECSBSSCCHHHHHHHHSCCEEEEE
T ss_pred CCeEEEEEcCCC-cc-----HHHHHHHHHhccCCCCCCCCeEEEEEEeCCceEEEECCCccccchHHHHHhhCCccccEE
Confidence 999999997532 11 122567899999 7999987642 368
Q ss_pred EEEeeeeecCCC--CCCCceeeC--CCcEEEEEeeEEcChHHHHHHhcCCCccCCChHHHHHHHHHHHH-----------
Q 010213 46 LAHQRLAIIDPA--SGDQPLYNE--DKKIVVTVNGEIYNHEALRERLTNHKFRTGSDCDVIAHLYEEYG----------- 110 (515)
Q Consensus 46 l~h~rl~~~~~~--~~~qP~~~~--~~~~~~~~nGei~n~~~L~~~l~~~~~~~~~D~e~i~~~~~~~G----------- 110 (515)
+||+|+++.|.. .++|||... +++++++|||.|.|+.+ +.+ ++.|.++||||+|++++.+.-
T Consensus 75 IgHvR~AT~G~~~~~NahPf~~~~~~~~~a~aHNG~i~n~~~-r~~--~~~~~s~TDSEvi~~li~~~~~~~~~~~~~~~ 151 (257)
T 1te5_A 75 IGHIRQANVGKVGLSNTHPFIRELGGRYWTFAHNGQLADFQP-KPG--FYRPVGETDSEAAFCDLLNRVRRAFPEPVPVE 151 (257)
T ss_dssp EEEEEECCCSCCSGGGCSCEEEEETTEEEEEEEESCBSSCCC-CCC--SSCCSSCCHHHHHHHHHHHHHHHHCSSCCCHH
T ss_pred EEEeecCCCCCCCcCcCCCcEecCCCCeEEEEecCcccCchh-hhc--cCCcccCCHHHHHHHHHHHHHHHhcCCCchHH
Confidence 999999999854 489999864 56799999999999998 654 356899999999999987632
Q ss_pred --Hhhhhccc------cceEEEEEECCCCEEEEEec----------CCCcceeEE-------EE---ecCcEEEEEcCcc
Q 010213 111 --ENFVDMLD------GMFSFVLLDTRDNSFIVARD----------AIGITSLYI-------GW---GLDGSIWISSELK 162 (515)
Q Consensus 111 --~~~~~~l~------G~fa~v~~d~~~~~l~~~rD----------~~G~~pLyy-------~~---~~~~~~~faSe~~ 162 (515)
.+++.++. |.|++++.|. ++|+++|| ++|.+||.. .. ..++.++||||.
T Consensus 152 a~~~al~~l~~~~~~~G~~n~~l~~g--~~l~a~rd~~L~~~~~~~p~g~rpL~~~~~~i~~g~~~~~~~~~~vvASE~- 228 (257)
T 1te5_A 152 VLLPVLISACDEYRKKGVFNALISDG--DWLFTFCSSKLAYITRRAPFGPARLKDADLTVDFHAETTPDDVVTVIATEP- 228 (257)
T ss_dssp HHHHHHHHHHHHHHTTBCCEEEEESS--SCEEEECSSCEEEEEEESSCCCEEEECSSEEEEECCCSSTTCEEEEEESSC-
T ss_pred HHHHHHHHHHHHHHhcCcEEEEEEcC--CEEEEEEcCCceEEeecCCCcccccccccceeecccccCCCCCEEEEEeCc-
Confidence 13455554 9999999998 89999999 999999964 20 123468999994
Q ss_pred cccccCCcceEeCCCeEEEecCCceE
Q 010213 163 GLNDDCEHFEAFPPGHLYSSKSGGLK 188 (515)
Q Consensus 163 ~l~~~~~~i~~l~pG~~~~~~~~~~~ 188 (515)
|. ..+.++.|+||+++.++.+.+.
T Consensus 229 -l~-~~~~wr~v~pGe~v~i~~~~~~ 252 (257)
T 1te5_A 229 -LT-DNENWTLQQSGEWVLWWGGEVL 252 (257)
T ss_dssp -SS-SSSSCEEECTTCEEEEETTEEE
T ss_pred -cC-CCCCeeEeCCCEEEEEECCEEE
Confidence 44 3568999999999998877654
|
| >1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=6.6e-15 Score=167.03 Aligned_cols=159 Identities=19% Similarity=0.177 Sum_probs=123.5
Q ss_pred HHHHHHHHHHhcccCCCC----CCceEEEC-----------------------------CEEEEEeeeeecCCC--CCCC
Q 010213 17 KRVRVLELSRRLKHRGPD----WSGLYQHG-----------------------------DFYLAHQRLAIIDPA--SGDQ 61 (515)
Q Consensus 17 ~~~~~~~~~~~l~~RGpd----~~g~~~~~-----------------------------~~~l~h~rl~~~~~~--~~~q 61 (515)
....+......++||+++ +.++...+ .++++|+|++|.+.. .+.|
T Consensus 144 ~~r~ly~~r~~le~~~~~~~~~~~yi~Sls~~~~vyKGmgl~~~v~~~y~dL~d~~~~g~~aigH~RySTnt~p~w~~AQ 223 (1479)
T 1ea0_A 144 FELDLYIIRRRIEKAVKGEQINDFYICSLSARSIIYKGMFLAEQLTTFYPDLLDERFESDFAIYHQRYSTNTFPTWPLAQ 223 (1479)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSCEEEEEESSEEECCBSSCGGGHHHHCGGGGSTTCCBSEEEEEECCCSCSCCCSTTSS
T ss_pred HHHHHHHHHHHHHHhhhhccCCcEEEEEecCcEEEEecCcCHHHhhhhhhhhcccccceeEEEeeecccCCCCCCcccCC
Confidence 345666777889999853 34444322 489999999998854 4789
Q ss_pred ceeeCCCcEEEEEeeEEcChHHHHHHhc------------------C-CCccCCChHHHH---HHHHHHHH---------
Q 010213 62 PLYNEDKKIVVTVNGEIYNHEALRERLT------------------N-HKFRTGSDCDVI---AHLYEEYG--------- 110 (515)
Q Consensus 62 P~~~~~~~~~~~~nGei~n~~~L~~~l~------------------~-~~~~~~~D~e~i---~~~~~~~G--------- 110 (515)
||. +++|||||.|...+++++. + ..|.+.||||++ ++++.+.|
T Consensus 224 Pf~------~laHNGeInn~~~nr~~m~are~~~~~~~~G~~l~~~~pii~~~~SDSevld~~lelL~~~g~~l~~A~~~ 297 (1479)
T 1ea0_A 224 PFR------MLAHNGEINTVKGNVNWMKAHETRMEHPAFGTHMQDLKPVIGVGLSDSGSLDTVFEVMVRAGRTAPMVKMM 297 (1479)
T ss_dssp CCS------SEEEEECCTTHHHHHHHHHHHGGGCCCSTTGGGHHHHCCSSCTTCCHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred ccE------EEEECChhhCHHHHHHHHHHhHhhhcCchhhhhHHhcCCcCCCCCCcHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 995 3899999999999997641 1 237899999999 44433333
Q ss_pred -----------------------HhhhhccccceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcCccccccc
Q 010213 111 -----------------------ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD 167 (515)
Q Consensus 111 -----------------------~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~ 167 (515)
..+++.++|.|++++.|. +.++++|||.|.|||.|+...|+.+++|||..+|...
T Consensus 298 liPeaw~~~~~m~~~~~~fye~~~~~me~~dGp~slv~~dg--~~l~a~~DrnGlRPl~~g~t~d~~~v~ASE~galdi~ 375 (1479)
T 1ea0_A 298 LVPQALTSSQTTPDNHKALIQYCNSVMEPWDGPAALAMTDG--RWVVGGMDRNGLRPMRYTITTDGLIIGGSETGMVKID 375 (1479)
T ss_dssp HSCCCCC---CCCHHHHHHHHHHHHHCCCCCSSEEEEECSS--SEEEEECCTTCCSCCEEEEETTSEEEECSSSTTSCCC
T ss_pred hCchhhcccccCCHHHHHHHHHHHHhhccCCCcEEEEEEeC--CEEEEEecCCCCcceEEEEECCCEEEEEcccccccCc
Confidence 134689999999999988 8999999999999999998766789999999999654
Q ss_pred CCcc-e--EeCCCeEEEec
Q 010213 168 CEHF-E--AFPPGHLYSSK 183 (515)
Q Consensus 168 ~~~i-~--~l~pG~~~~~~ 183 (515)
...+ + +|.||+++.++
T Consensus 376 ~a~~vrkg~l~PGemv~id 394 (1479)
T 1ea0_A 376 ETQVIEKGRLGPGEMIAVD 394 (1479)
T ss_dssp GGGEEEEEECCTTCEEEEE
T ss_pred chheeeccCCCCCeEEEEE
Confidence 4333 4 89999998775
|
| >1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3e-14 Score=162.05 Aligned_cols=159 Identities=18% Similarity=0.135 Sum_probs=124.2
Q ss_pred HHHHHHHHHHhcccCCCCCCceEEEC-----------------------------CEEEEEeeeeecCCC--CCCCceee
Q 010213 17 KRVRVLELSRRLKHRGPDWSGLYQHG-----------------------------DFYLAHQRLAIIDPA--SGDQPLYN 65 (515)
Q Consensus 17 ~~~~~~~~~~~l~~RGpd~~g~~~~~-----------------------------~~~l~h~rl~~~~~~--~~~qP~~~ 65 (515)
....+......++||++++.++...+ .++++|+|++|.+.. .+.|||.
T Consensus 144 ~~r~ly~~r~~le~~~~~~~yI~S~s~~~~vyKgmgl~~~v~~~y~dL~~~~~~g~~aigH~RySTnt~p~w~~AQPf~- 222 (1520)
T 1ofd_A 144 LDRRLYIARSIIGKKLAEDFYVCSFSCRTIVYKGMVRSIILGEFYLDLKNPGYTSNFAVYHRRFSTNTMPKWPLAQPMR- 222 (1520)
T ss_dssp HHHHHHHHHHHHGGGCBTTBEEEEEESSEEEEEESSCHHHHHHHBHHHHCTTCCBSEEEEEECCCSSSCCCGGGSSCCS-
T ss_pred HHHHHHHHHHHHHhhccCCEEEEEecCcEEEEeCCccHHHHhhhhhhccccccceeEEEEEccccCCCCCCcccCCchh-
Confidence 35567777889999997655555433 489999999998864 4789995
Q ss_pred CCCcEEEEEeeEEcChHHHHHH-----------------h--cC-CCccCCChHHHHHHHHH---HHH------------
Q 010213 66 EDKKIVVTVNGEIYNHEALRER-----------------L--TN-HKFRTGSDCDVIAHLYE---EYG------------ 110 (515)
Q Consensus 66 ~~~~~~~~~nGei~n~~~L~~~-----------------l--~~-~~~~~~~D~e~i~~~~~---~~G------------ 110 (515)
+++|||||.|...+++. | .+ ..|.+.||||++.++++ +.|
T Consensus 223 -----~LaHNGeInt~~~nrnwm~aR~~~~~s~~~~g~~l~~~~p~i~~~~SDSe~ld~~lelL~~~g~~l~~A~~~liP 297 (1520)
T 1ofd_A 223 -----LLGHNGEINTLLGNINWMAAREKELEVSGWTKAELEALTPIVNQANSDSYNLDSALELLVRTGRSPLEAAMILVP 297 (1520)
T ss_dssp -----SEEEEECCTTHHHHHHHHHHHGGGCCCTTCCHHHHHHHCCSCCTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHSC
T ss_pred -----eeEecchhhcHHHHHHHHHHHHHHhcCcccchhhHHhhCCcCCCCCCcHHHHHHHHHHHHhcCCCHHHHHHHhCc
Confidence 38999999999888822 1 13 35789999999965444 333
Q ss_pred ----------------------HhhhhccccceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcCcccccccC
Q 010213 111 ----------------------ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDC 168 (515)
Q Consensus 111 ----------------------~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~ 168 (515)
..+++.++|.|++++.|. +.++++|||.|.|||.|+...++.+++|||..+|.-..
T Consensus 298 eaw~~~~~m~~~~~~~~fyey~~~~me~~dGpaalv~~dg--~~l~a~~DrnGlRPl~~~~t~d~~~v~ASE~galdi~~ 375 (1520)
T 1ofd_A 298 EAYKNQPALKDYPEISDFHDYYSGLQEPWDGPALLVFSDG--KIVGAGLDRNGLRPARYCITKDDYIVLGSEAGVVDLPE 375 (1520)
T ss_dssp CCCTTCGGGTTCHHHHHHHHHHTTTCCCCCSSEEEEEECS--SEEEEEECTTCCSCCEEEEETTCCEEEESSTTCSCCCG
T ss_pred chhcccccccccHHHHHHHHHHHHhcccCCCCEEEEEEeC--CEEEEEecCCCCCceEEEEeCCCEEEEEcccccccCcc
Confidence 123678999999999998 89999999999999999887567799999999996543
Q ss_pred Cc-ce--EeCCCeEEEec
Q 010213 169 EH-FE--AFPPGHLYSSK 183 (515)
Q Consensus 169 ~~-i~--~l~pG~~~~~~ 183 (515)
.. ++ +|.||+++.++
T Consensus 376 a~~vrkg~l~PGemv~id 393 (1520)
T 1ofd_A 376 VDIVEKGRLAPGQMIAVD 393 (1520)
T ss_dssp GGEEEEEECCTTCEEEEE
T ss_pred hheeeccCCCCCeEEEEE
Confidence 33 34 89999998775
|
| >2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.11 E-value=6.7e-11 Score=114.07 Aligned_cols=133 Identities=20% Similarity=0.236 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCChHHHHHHHHHHhC
Q 010213 207 PLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLG 286 (515)
Q Consensus 207 ~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg 286 (515)
.+++.+.+.+.++.. ...++.+.||||+||+++++++.+.... .++.++++.+..+.|...|+++|+.+|
T Consensus 6 ~~~~~~~l~~~i~~~--~~~~vvv~lSGGiDSs~~~~l~~~~~g~--------~~v~av~~~~~~~~~~~~a~~~a~~lg 75 (257)
T 2e18_A 6 YDKVIERILEFIREK--GNNGVVIGISGGVDSATVAYLATKALGK--------EKVLGLIMPYFENKDVEDAKLVAEKLG 75 (257)
T ss_dssp HHHHHHHHHHHHHHH--CTTCEEEECCSSHHHHHHHHHHHHHHCG--------GGEEEEECCSSCSTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh--CCCcEEEEecCCHHHHHHHHHHHHhcCC--------CcEEEEEeCCCCchHHHHHHHHHHHhC
Confidence 456667777777776 5568999999999999999999887521 368888887654478899999999999
Q ss_pred CCceEEEeChhHHHHHHHHHHHhhccCCCC---cccchHHHHHHHHHHHhCCCeEEEeccCccccccCCcc
Q 010213 287 TVHHEFHFTVQDGIDAIEEVIYHVETYDVT---TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (515)
Q Consensus 287 ~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~---~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~ 354 (515)
++|+++.+++ ..+.+.+.+.. .+... .+.....+..+.+.|.+.|+.++.||+. ||.+.||..
T Consensus 76 i~~~~i~i~~--~~~~~~~~l~~--~~~~~~~~n~~ar~r~~~l~~~A~~~g~~vl~tg~~-~e~~~Gy~t 141 (257)
T 2e18_A 76 IGYKVINIKP--IVDSFVENLEL--NLDRKGLGNIMSRTRMIMLYAHANSLGRIVLGTSNR-SEFLTGYFT 141 (257)
T ss_dssp CEEEECCCHH--HHHHHHHHHCS--CCCHHHHHHHHHHHHHHHHHHHHHHHTCEEECCCCH-HHHHHTCSC
T ss_pred CCEEEEEChH--HHHHHHHHhcc--ccccchhHHHHHHHHHHHHHHHHHHcCCEEEEcCch-hHHhcCCee
Confidence 9998877653 22222221110 00100 0111233456677788889999999985 566778743
|
| >3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.05 E-value=6e-10 Score=104.56 Aligned_cols=117 Identities=21% Similarity=0.300 Sum_probs=74.1
Q ss_pred ccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--CChHHHHHHHHHHhCCCceEEEeCh-hHHH-
Q 010213 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGTVHHEFHFTV-QDGI- 300 (515)
Q Consensus 225 ~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--~~d~~~A~~va~~lg~~~~~~~~~~-~~~~- 300 (515)
..+++++||||+||+++++++.+.. .++.++++.+.. .+|.++|+++|+++|++|+++.++. .+..
T Consensus 3 ~~~v~v~lSGG~DS~~ll~ll~~~~----------~~v~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~~~~~~~~~~~~ 72 (219)
T 3bl5_A 3 KEKAIVVFSGGQDSTTCLLWALKEF----------EEVETVTFHYNQRHSQEVEVAKSIAEKLGVKNHLLDMSLLNQLAP 72 (219)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHC----------SEEEEEEEESSCTTCHHHHHHHHHHHTTCCCEEEEECGGGGGGST
T ss_pred CCCEEEEccCcHHHHHHHHHHHHcC----------CceEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEeChHHhhhcc
Confidence 4579999999999999999998753 468888886543 3688899999999999999998764 2110
Q ss_pred -----HHHHHHHHhhccCCCCcccchHHHH--HHHHHHHhCCCeEEEeccCccccccCCc
Q 010213 301 -----DAIEEVIYHVETYDVTTIRASTPMF--LMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (515)
Q Consensus 301 -----~~l~~~~~~~e~~~~~~~~~~~~~~--~l~~~a~~~g~~vlltG~GgDelf~Gy~ 353 (515)
+.+.........+. +...+....| ++.+.+++.|+++++||+++|+. ++|+
T Consensus 73 ~~l~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~a~~~g~~~i~tG~~~dd~-~~~~ 130 (219)
T 3bl5_A 73 NALTRNDIEIEVKDGELPS-TFVPGRNLVFLSFASILAYQIGARHIITGVCETDF-SGYP 130 (219)
T ss_dssp GGGC--------------C-CCCTTHHHHHHHHHHHHHHHHTCSEEECCCCC-----CCG
T ss_pred cccccccccccccccCCCC-ceeechHHHHHHHHHHHHHHcCCCEEEEecccccc-CCCC
Confidence 01111000001111 1111222233 44677888899999999999995 5664
|
| >1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A | Back alignment and structure |
|---|
Probab=99.03 E-value=4e-10 Score=109.25 Aligned_cols=129 Identities=17% Similarity=0.120 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCC--ChHHHHHHHHHHh
Q 010213 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS--PDLKYAKEVADYL 285 (515)
Q Consensus 208 ~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~--~d~~~A~~va~~l 285 (515)
+.+.+.|.+.++.. ...++.+.||||+||+++++++.+..+ .++.++++.+... .|...|+++|+.+
T Consensus 10 ~~l~~~l~~~v~~~--~~~~vvv~lSGGiDSsv~~~l~~~~~~---------~~v~av~~~~~~~~~~e~~~a~~~a~~l 78 (268)
T 1xng_A 10 VYLCDFLEKEVQKR--GFKKVVYGLSGGLDSAVVGVLCQKVFK---------ENAHALLMPSSVSMPENKTDALNLCEKF 78 (268)
T ss_dssp HHHHHHHHHHHHHT--TCCCEEEECCSSHHHHHHHHHHHHHHG---------GGEEEEECCCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCEEEEccCcHHHHHHHHHHHHhCC---------CCEEEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 44555555555442 345799999999999999999988751 4788999876532 5788999999999
Q ss_pred CCCceEEEeChhHHHHHHHHHHHhhccCCCCcccc---hHHHHHHHHHHHhCCCeEEEeccCccccccCCc
Q 010213 286 GTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRA---STPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (515)
Q Consensus 286 g~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~---~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~ 353 (515)
|++|+++.+++ ..+.+.+. .....+....+ ...+..+++.|.+.|+.|+.||+ .||.+.||.
T Consensus 79 gi~~~~i~i~~--~~~~~~~~---~~~~~~~~~~n~~~r~R~~~l~~~A~~~g~~vl~tg~-~~E~~~Gy~ 143 (268)
T 1xng_A 79 SIPYTEYSIAP--YDAIFSSH---FKDASLTRKGNFCARLRMAFLYDYSLKSDSLVIGTSN-KSERMLGYG 143 (268)
T ss_dssp TCCEEECCCHH--HHHHHHHH---CTTCCHHHHHHHHHHHHHHHHHHHHHHHTCEEBCCCC-HHHHHHTCS
T ss_pred CCCEEEEeChH--HHHHHHHH---hhhcCCchHHHHHHHHHHHHHHHHHHHCCCEEEECCc-HHHHhcCcc
Confidence 99998877653 22222111 11100000111 12344567778888999988875 588888885
|
| >1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A | Back alignment and structure |
|---|
Probab=99.03 E-value=4e-10 Score=109.24 Aligned_cols=142 Identities=15% Similarity=0.115 Sum_probs=86.7
Q ss_pred cHHHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCC-CceeeEEeecCCCChHHHHHHHHHH
Q 010213 206 DPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWG-TQLHSFCVGLEGSPDLKYAKEVADY 284 (515)
Q Consensus 206 ~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~-~~i~~~t~~~~~~~d~~~A~~va~~ 284 (515)
.++++.+.|.+.|+++.. ..+.+.||||+|||++++++++....-... .+ .++.++++.+....|...|+++|++
T Consensus 21 ~i~~~~~~L~d~v~~~g~--~~vvvgLSGGvDSsv~a~La~~a~~~lg~~--~~~~~v~av~~~~~~~~d~~~A~~va~~ 96 (271)
T 1kqp_A 21 EIEDRVNFLKQYVKKTGA--KGFVLGISGGQDSTLAGRLAQLAVESIREE--GGDAQFIAVRLPHGTQQDEDDAQLALKF 96 (271)
T ss_dssp HHHHHHHHHHHHHHHHTC--CEEEEECCSSHHHHHHHHHHHHHHHHHHHT--TCCCEEEEEECCSSSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC--CCEEEECCCCHHHHHHHHHHHHHHHHhccc--CCCceEEEEEeCCCCCCCHHHHHHHHHh
Confidence 455677777788777643 356778999999999999988764210000 00 1466666654334578999999999
Q ss_pred hCC-CceEEEeChhHHHHHHHHHHHhh-ccC-CCCcccc---hHHHHHHHHHHHhCCCeEEEeccCccccccCCcc
Q 010213 285 LGT-VHHEFHFTVQDGIDAIEEVIYHV-ETY-DVTTIRA---STPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (515)
Q Consensus 285 lg~-~~~~~~~~~~~~~~~l~~~~~~~-e~~-~~~~~~~---~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~ 354 (515)
+|+ +|+++++++ ..+.+.+.+... +.+ ......+ ...+..++..|.+.|.. ++++.+.||++.||..
T Consensus 97 lgi~~~~~i~i~~--~~~~~~~~l~~~~~~~~~~~~~~N~~aR~r~~~l~~~A~~~g~l-vl~tgn~~E~~~Gy~t 169 (271)
T 1kqp_A 97 IKPDKSWKFDIKS--TVSAFSDQYQQETGDQLTDFNKGNVKARTRMIAQYAIGGQEGLL-VLGTDHAAEAVTGFFT 169 (271)
T ss_dssp HCCSEEEECCCHH--HHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHTCE-EBCCCCHHHHTTTCSC
T ss_pred cCCCeEEEeccHH--HHHHHHHHHhhhcCCCCcchhhhhHHHHHHHHHHHHHHHHCCCE-EEECccHHHhccCCcc
Confidence 999 888877653 233333333321 211 1111111 12244555667677764 5666677999999954
|
| >3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=98.96 E-value=9.8e-10 Score=118.32 Aligned_cols=138 Identities=17% Similarity=0.141 Sum_probs=95.1
Q ss_pred cHHHHHHHHHHHHHHhhccc--cceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCC--ChHHHHHHH
Q 010213 206 DPLVLRQAFENAVIKRLMTD--VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS--PDLKYAKEV 281 (515)
Q Consensus 206 ~~~~l~~~l~~aV~~rl~~~--~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~--~d~~~A~~v 281 (515)
..+++.+.+...++.++... ..+.+.||||+||+++++++.+.+.. .++.++++..... .|...|+++
T Consensus 305 ~~~~~~~~~~~~l~~~~~~~g~~~vvvglSGGvDSsv~a~la~~alG~--------~~v~~v~m~~~~~~~~~~~~A~~l 376 (590)
T 3n05_A 305 ADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGA--------QNVYGVSMPSKYSSDHSKGDAAEL 376 (590)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCCEEEECCSSHHHHHHHHHHHHHHCG--------GGEEEEECCCSSCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCcEEEEcCCCHHHHHHHHHHHHHhCc--------ccEEEEEECCCCCCHHHHHHHHHH
Confidence 45677777778888777543 57889999999999999999887521 4788999876543 478899999
Q ss_pred HHHhCCCceEEEeChhHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccccCCccc
Q 010213 282 ADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 355 (515)
Q Consensus 282 a~~lg~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~~ 355 (515)
|+++|++|+++++++. .+.+...+. .+......+.....+..++..|.+.|..|+.|| +.||++.||...
T Consensus 377 a~~lgi~~~~i~i~~~--~~~~~~~l~-~~~~~~~n~~ar~r~~~l~~~A~~~g~~vl~TG-n~se~~~Gy~t~ 446 (590)
T 3n05_A 377 ARRTGLNFRTVSIEPM--FDAYMASLG-LTGLAEENLQSRLRGTTLMAISNQEGHIVLAPG-NKSELAVGYSTL 446 (590)
T ss_dssp HHHHTCEEEECCSHHH--HHHHHHHHC-CCTHHHHHHHHHHHHHHHHHHHHHHTCEEBCCC-CHHHHHHTCCCS
T ss_pred HHHcCCcEEEEEChHH--HHHHHHHhc-ccchhhhHHHHHHHHHHHHHHHHhcCCEEEeCC-CHHHHhcCchhh
Confidence 9999999998876532 222211111 000000011122344556677788899999999 888999898653
|
| >3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.8e-09 Score=98.79 Aligned_cols=109 Identities=22% Similarity=0.196 Sum_probs=73.8
Q ss_pred cceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCChHHHHHHHHHHhCCCceEEEeChhHHHHHHHH
Q 010213 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEE 305 (515)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~~ 305 (515)
.++++++|||+||+++++++.+.. .++.++++.+...+|..+++++|+.+|++|+++.++.......++.
T Consensus 7 ~kv~v~~SGG~DS~~ll~ll~~~g----------~~v~~~~v~~~~~~~~~~~~~~a~~lgi~~~~~~~~~~~~~~~~~~ 76 (203)
T 3k32_A 7 MDVHVLFSGGKDSSLSAVILKKLG----------YNPHLITINFGVIPSYKLAEETAKILGFKHKVITLDRKIVEKAADM 76 (203)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTT----------EEEEEEEEECSSSCTTHHHHHHHHHHTCEEEEEECCTHHHHHHHHH
T ss_pred CeEEEEEECcHHHHHHHHHHHHcC----------CCeEEEEEeCCCchHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHH
Confidence 579999999999999999887642 5788888876554588999999999999999998875432222222
Q ss_pred HHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccc
Q 010213 306 VIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIF 349 (515)
Q Consensus 306 ~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf 349 (515)
... ...+. . ........+.+.+++ |+++++||+.+|+..
T Consensus 77 ~~~-~~~~~--~-~c~~~~~~~l~~~A~-g~~~i~tGh~~dD~~ 115 (203)
T 3k32_A 77 IIE-HKYPG--P-AIQYVHKTVLEILAD-EYSILADGTRRDDRV 115 (203)
T ss_dssp HHH-HSSSH--H-HHHHHHHHHHHHHTT-TCSEEECCCCTTCCS
T ss_pred HHh-cCCCc--c-HHHHHHHHHHHHHhc-CCCEEEECCCcccch
Confidence 221 11111 0 111122223333333 899999999999876
|
| >3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=98.87 E-value=4.2e-09 Score=100.59 Aligned_cols=134 Identities=15% Similarity=0.180 Sum_probs=84.2
Q ss_pred cHHHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--CChHHHHHHHHH
Q 010213 206 DPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVAD 283 (515)
Q Consensus 206 ~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--~~d~~~A~~va~ 283 (515)
..+++.+.|++.|+.. ....+.+.||||+||+++++++.+.+ ....++++.... ..|...|+++|+
T Consensus 12 ~~~~l~~~l~~~v~~~--~~~~vvv~lSGGiDSsv~a~l~~~~~----------~~~~av~~~~~~~~~~~~~~a~~~a~ 79 (249)
T 3fiu_A 12 YSQKLVNWLSDSCMNY--PAEGFVIGLSGGIDSAVAASLAVKTG----------LPTTALILPSDNNQHQDMQDALELIE 79 (249)
T ss_dssp HHHHHHHHHHHHHHTT--TCSEEEEECCSSHHHHHHHHHHHHTT----------SCEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh--CCCCEEEEecCcHHHHHHHHHHHHhC----------CCCEEEEecCCCCCHHHHHHHHHHHH
Confidence 3455666666666543 23568899999999999999998865 233378876543 257889999999
Q ss_pred HhCCCceEEEeChhHHHHHHHHHHHhh-c---cCCCCcccc---hHHHHHHHHHHHhCCCeEEEeccCccccccCCcc
Q 010213 284 YLGTVHHEFHFTVQDGIDAIEEVIYHV-E---TYDVTTIRA---STPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (515)
Q Consensus 284 ~lg~~~~~~~~~~~~~~~~l~~~~~~~-e---~~~~~~~~~---~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~ 354 (515)
++|++|+++.+++ ..+.+.+.+... + .+...+..+ ...+..+...|.+.|+.++-||+ .||.+.||..
T Consensus 80 ~lgi~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ni~~r~R~~~l~~~A~~~g~~vl~TGn-~sE~~~G~~t 154 (249)
T 3fiu_A 80 MLNIEHYTISIQP--AYEAFLASTQSFTNLQNNRQLVIKGNAQARLRMMYLYAYAQQYNRIVIGTDN-ACEWYMGYFT 154 (249)
T ss_dssp HHTCEEEECCCHH--HHHHHHHHTGGGC------CHHHHHHHHHHHHHHHHHHHHHHHTEEEBCCCC-HHHHHHTCSC
T ss_pred HhCCCEEEEEChH--HHHHHHHHHHhhccCCCCcChhHHHHHHHHHHHHHHHHHHHHcCCEEEECCC-HHHHhcCchh
Confidence 9999998877643 223222211100 1 111000011 12234566778888999999994 5677777643
|
| >3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0 | Back alignment and structure |
|---|
Probab=98.83 E-value=4.1e-09 Score=100.63 Aligned_cols=131 Identities=18% Similarity=0.196 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHhhcc--ccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--CChHHHHHHHHH
Q 010213 208 LVLRQAFENAVIKRLMT--DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVAD 283 (515)
Q Consensus 208 ~~l~~~l~~aV~~rl~~--~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--~~d~~~A~~va~ 283 (515)
+++.+.+...++..+.. ..++.+.||||+||+++++++.+.. |.++.++++.... ..|...|+++|+
T Consensus 7 ~~~~~~l~~~l~d~v~~~g~~~vvv~lSGGiDSsv~a~l~~~~~---------g~~v~av~~~~~~~~~~~~~~a~~~a~ 77 (249)
T 3p52_A 7 QKITEKMCDFIQEKVKNSQSQGVVLGLSGGIDSALVATLCKRAL---------KENVFALLMPTQISNKANLEDALRLCA 77 (249)
T ss_dssp HHHHHHHHHHHHHHHHTSSCSEEEEECCSSHHHHHHHHHHHHHH---------TTSEEEEECCSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHHHHHc---------CCcEEEEEecCCCCCHHHHHHHHHHHH
Confidence 44555555555555443 3578899999999999999998875 3578889887653 357889999999
Q ss_pred HhCCCceEEEeChhHHHHHHHHHHHhhccCCCCcccc---hHHHHHHHHHHHhCCCeEEEeccCccccccCCc
Q 010213 284 YLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRA---STPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (515)
Q Consensus 284 ~lg~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~---~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~ 353 (515)
.+|++|+++.+++ ..+.+ .....++......+ ...+..+...|.+.|+.++-||+ .||++.||.
T Consensus 78 ~lgi~~~~v~i~~--~~~~~---~~~~~~~~~~~~~n~~~r~R~~~l~~~A~~~g~~vl~tgn-~se~~~g~~ 144 (249)
T 3p52_A 78 DLNLEYKIIEIQS--ILDAF---IKQSENTTLVSLGNFAARIRMSLLYDYSALKNSLVIGTSN-KSELLLGYG 144 (249)
T ss_dssp HHTCEEEECCCHH--HHHHH---HTTCSCCCHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCC-HHHHHHTCS
T ss_pred HhCCCEEEEECcH--HHHHH---HHhccccCCccHhHHHHHHHHHHHHHHHHHCCCeEEeCCC-HHHHHccch
Confidence 9999998876643 22222 11111111111111 12233566778888987666665 456555664
|
| >2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.7e-08 Score=95.65 Aligned_cols=117 Identities=18% Similarity=0.259 Sum_probs=75.2
Q ss_pred cceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCC--ChHHHHHHHHHHhCCC-ceEEEeCh-hHHHH
Q 010213 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS--PDLKYAKEVADYLGTV-HHEFHFTV-QDGID 301 (515)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~--~d~~~A~~va~~lg~~-~~~~~~~~-~~~~~ 301 (515)
.++.+++|||+||+++++++.+.. .++.++++.+... .|.+.|+++|+++|++ |+++.++. +++..
T Consensus 3 ~kvvv~lSGG~DS~~~l~ll~~~~----------~~v~av~~~~g~~~~~e~~~a~~~a~~lgi~~~~vi~~~~l~~~~~ 72 (232)
T 2pg3_A 3 KRAVVVFSGGQDSTTCLIQALQDY----------DDVHCITFDYGQRHRAEIEVAQELSQKLGAAAHKVLDVGLLNELAT 72 (232)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHC----------SEEEEEEEESSSSCHHHHHHHHHHHHHHTCSEEEEEECTHHHHTSH
T ss_pred CCEEEEecCcHHHHHHHHHHHHcC----------CCEEEEEEECCCCCHHHHHHHHHHHHHhCCCceEEEeChhHHHHhh
Confidence 368899999999999999998764 4677888765432 5788999999999999 99988762 22211
Q ss_pred -HHHHH---H----HhhccCCCCcccchHHH--HHHHHHHHhCCCeEEEeccCccccccCCc
Q 010213 302 -AIEEV---I----YHVETYDVTTIRASTPM--FLMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (515)
Q Consensus 302 -~l~~~---~----~~~e~~~~~~~~~~~~~--~~l~~~a~~~g~~vlltG~GgDelf~Gy~ 353 (515)
.+.+. + +..+....+........ .++.+.|.+.|++++++|+.+|+.. +|+
T Consensus 73 ~~l~~~~~~v~~~~~~~~~~~~~~~~~R~~~~~~la~~~A~~~g~~~I~~G~~~~D~~-~~~ 133 (232)
T 2pg3_A 73 SSLTRDSIPVPDYDANAQGIPNTFVPGRNILFLTLASIYAYQVGAEAVITGVCETDFS-GYP 133 (232)
T ss_dssp HHHHHTTCCCCC---------CCCCTTHHHHHHHHHHHHHHHHTCSEEECCCCSCSSS-CCG
T ss_pred hhcccccccccccccccCCCCCCeEechHHHHHHHHHHHHHHcCcCEEEEccCccccC-CCC
Confidence 11110 0 00011111111111112 2335677888999999999999875 454
|
| >1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=7.9e-09 Score=100.11 Aligned_cols=138 Identities=12% Similarity=0.043 Sum_probs=79.3
Q ss_pred HHHHHHHhhcc---ccceEEeecCCcchHHHHHHHHHHhccccccc-cCCCceeeEEeecCCCChHHHHHHHHHHhCC-C
Q 010213 214 FENAVIKRLMT---DVPFGVLLSGGLDSSLVASITARHLAGTKAAR-QWGTQLHSFCVGLEGSPDLKYAKEVADYLGT-V 288 (515)
Q Consensus 214 l~~aV~~rl~~---~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~-~~~~~i~~~t~~~~~~~d~~~A~~va~~lg~-~ 288 (515)
+...++..++. ...+.+.||||+||+++++++++....-+... ..+.++.++++.+....|...|+++|+.+|+ +
T Consensus 26 ~~~~L~~~l~~~g~~~~vvvglSGGvDSsv~a~L~~~a~~~lg~~~~~~~~~v~av~~~~~~~~~~~dA~~va~~lgi~~ 105 (275)
T 1wxi_A 26 SVDFLKSYLQTYPFIKSLVLGISGGQDSTLAGKLCQMAINELRLETGNESLQFIAVRLPYGVQADEQDCQDAIAFIQPDR 105 (275)
T ss_dssp HHHHHHHHHHHSTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECCSSSCTTHHHHHHHHHHHCCSE
T ss_pred HHHHHHHHHHHcCCCCCEEEECcCcHHHHHHHHHHHHHHHHhccccccccceEEEEEeCCCCccCHHHHHHHHHHcCCCe
Confidence 34444444432 23688999999999999999887642100000 0012678888775444588999999999999 8
Q ss_pred ceEEEeChhHHHHHHHHHHHhhc-cCCCCcccc---hHHHHHHHHHHHhCCCeEEEeccCccccccCCcc
Q 010213 289 HHEFHFTVQDGIDAIEEVIYHVE-TYDVTTIRA---STPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (515)
Q Consensus 289 ~~~~~~~~~~~~~~l~~~~~~~e-~~~~~~~~~---~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~ 354 (515)
|+++++++ ..+.+.+...... ++......+ ...+..++..|.+.|..|+-|| ..+|.+.||..
T Consensus 106 ~~~i~i~~--~~~~~~~~l~~~g~~~~~~~~~N~~aR~r~~~l~~~A~~~g~lvlgTg-n~~E~~~Gy~t 172 (275)
T 1wxi_A 106 VLTVNIKG--AVLASEQALREAGIELSDFVRGNEKARERMKAQYSIAGMTSGVVVGTD-HAAEAITGFFT 172 (275)
T ss_dssp EEECCCHH--HHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCC-CHHHHTTTCSC
T ss_pred EEEEecHH--HHHHHHHHHHhcCCCCCCchhhhhhhhHHHHHHHHHHHHCCCEEEECc-cHHHHccCccc
Confidence 88877643 2333322222111 111111111 1123344556677787666555 55677888853
|
| >2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A | Back alignment and structure |
|---|
Probab=98.67 E-value=3.4e-08 Score=97.45 Aligned_cols=125 Identities=18% Similarity=0.227 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC--CCChHHHHHH-HHHHh
Q 010213 209 VLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKE-VADYL 285 (515)
Q Consensus 209 ~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~--~~~d~~~A~~-va~~l 285 (515)
.+.+...+.++..+. +.++.++||||+||+++++++.+.. |.++.++++... ...|...+++ +++++
T Consensus 5 ~~~~~~~~~ir~~v~-~~kvlvalSGGvDSsvla~ll~~~~---------g~~v~av~vd~g~~~~~e~~~~~~~~a~~l 74 (308)
T 2dpl_A 5 RFVEEKVREIRETVG-DSKAIIALSGGVDSSTAAVLAHKAI---------GDRLHAVFVNTGFLRKGEPEFVVKTFRDEF 74 (308)
T ss_dssp HHHHHHHHHHHHHHT-TSCEEEECCSSHHHHHHHHHHHHHH---------GGGEEEEEEECSCCCTTHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhC-CCCEEEEEeChHHHHHHHHHHHHhh---------CCCEEEEEEcCCCCChHHHHHHHHHHHHHc
Confidence 344445555666654 4689999999999999999998874 247888887643 2467778887 55789
Q ss_pred CCCceEEEeChhHHHHHHHHHHHhhccCCC-CcccchHHHHHHHHHHHhCCCeEEEeccCcccc
Q 010213 286 GTVHHEFHFTVQDGIDAIEEVIYHVETYDV-TTIRASTPMFLMSRKIKSLGVKMVISGEGSDEI 348 (515)
Q Consensus 286 g~~~~~~~~~~~~~~~~l~~~~~~~e~~~~-~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDel 348 (515)
|++|+.+.++.. +.+.+.. ...+.. ..+........+.+.|++.|++.+++|+..|.+
T Consensus 75 gi~~~vv~~~~~-f~~~l~~----~~~pe~~~~~~~~~~~~~l~~~A~~~g~~~la~Gh~~dD~ 133 (308)
T 2dpl_A 75 GMNLHYVDAQDR-FFSALKG----VTDPEEKRKIIGRVFIEVFEEVAKKIGAEYLIQGTIAPDW 133 (308)
T ss_dssp CCEEEEEECHHH-HHHHTTT----CCCHHHHHHHHHHHHHHHHHHHHHHHTCSEEECCCCCC--
T ss_pred CCcEEEEECCHH-HHHhhhC----CCCHHHHHHHHHHHHHHHHHHHHHHcCcCEEEECCCCccc
Confidence 999999886532 1221110 000000 000001122345667788899999999998854
|
| >2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=98.67 E-value=3.5e-08 Score=99.92 Aligned_cols=114 Identities=19% Similarity=0.126 Sum_probs=76.4
Q ss_pred ccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC----------CChHHHHHHHHHHhCCCceEEEe
Q 010213 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG----------SPDLKYAKEVADYLGTVHHEFHF 294 (515)
Q Consensus 225 ~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~----------~~d~~~A~~va~~lg~~~~~~~~ 294 (515)
..+|.+.+|||+||+++++++.+.. .++.++++.... ..|...|+++|+.+|++|+++.+
T Consensus 9 ~~kVlVa~SGGvDSsv~a~lL~~~G----------~~V~~v~~~~~~~~~~~~~c~~~~d~~~a~~va~~lGIp~~vv~~ 78 (376)
T 2hma_A 9 KTRVVVGMSGGVDSSVTALLLKEQG----------YDVIGIFMKNWDDTDENGVCTATEDYKDVVAVADQIGIPYYSVNF 78 (376)
T ss_dssp GSEEEEECCSSHHHHHHHHHHHHTT----------CEEEEEEEECCCCCC----CHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCeEEEEEeCHHHHHHHHHHHHHcC----------CcEEEEEEECCCcccccccCCCHHHHHHHHHHHHHhCCcEEEEeC
Confidence 3579999999999999999998753 578888875431 13678899999999999999987
Q ss_pred ChhHHHHH-HHHHH---HhhccCCCCcccchHH-HHHHHHHHHhCCCeEEEeccCccccc
Q 010213 295 TVQDGIDA-IEEVI---YHVETYDVTTIRASTP-MFLMSRKIKSLGVKMVISGEGSDEIF 349 (515)
Q Consensus 295 ~~~~~~~~-l~~~~---~~~e~~~~~~~~~~~~-~~~l~~~a~~~g~~vlltG~GgDelf 349 (515)
+.+ +.+. +...+ ....+++++..++... +..+.+.|.+.|++.+.||+.+|...
T Consensus 79 ~~~-~~~~v~~~~l~~y~~G~tpnpc~~C~r~ik~~~l~~~A~~~G~d~IatGH~a~d~~ 137 (376)
T 2hma_A 79 EKE-YWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITLGADYVATGHYARVAR 137 (376)
T ss_dssp HHH-HHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHTTTCSEEECCCSEEEEE
T ss_pred hHH-HHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHhCCCCEEEECcchhhhh
Confidence 643 2221 11111 1112333221111111 23456778889999999999999864
|
| >1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1e-07 Score=94.49 Aligned_cols=126 Identities=10% Similarity=0.047 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHh--hccccceEEeecCCcchHHHHHHHHHHhccccccccCCCc-eeeEEeecCC----CChHHHHHH
Q 010213 208 LVLRQAFENAVIKR--LMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQ-LHSFCVGLEG----SPDLKYAKE 280 (515)
Q Consensus 208 ~~l~~~l~~aV~~r--l~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~-i~~~t~~~~~----~~d~~~A~~ 280 (515)
..+.+.+.++++.. +....++.+.+|||.||++++.++.+.... ++.+ +.++++.... ..|..++++
T Consensus 5 ~~~~~~~~~~i~~~~l~~~~~~vlva~SGG~DS~~Ll~ll~~~~~~------~g~~~v~av~vd~g~r~~s~~~~~~v~~ 78 (317)
T 1wy5_A 5 SRVIRKVLALQNDEKIFSGERRVLIAFSGGVDSVVLTDVLLKLKNY------FSLKEVALAHFNHMLRESAERDEEFCKE 78 (317)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECCSSHHHHHHHHHHHHSTTT------TTCSEEEEEEEECCSSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCEEEEEecchHHHHHHHHHHHHHHHH------cCCCEEEEEEEECCCCcccHHHHHHHHH
Confidence 34666777788775 456678999999999999999999875321 1346 7777775432 136788999
Q ss_pred HHHHhCCCceEEEeChhHHHHHHHHHHHhhccCCCCcccchHHHH-HHHHHHHhCCCeEEEeccCcccc
Q 010213 281 VADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDEI 348 (515)
Q Consensus 281 va~~lg~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~-~l~~~a~~~g~~vlltG~GgDel 348 (515)
+|+.+|++++++.++...+... . .... ...+....| .+.+.+++.|+++++||+.+|+.
T Consensus 79 ~a~~lgi~~~v~~~~~~~~~~~-------~-~~~~-e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~~dD~ 138 (317)
T 1wy5_A 79 FAKERNMKIFVGKEDVRAFAKE-------N-RMSL-EEAGRFLRYKFLKEILESEGFDCIATAHHLNDL 138 (317)
T ss_dssp HHHHHTCCEEEEECCHHHHHHH-------T-TCCH-HHHHHHHHHHHHHHHHHHTTCSEEECCCCHHHH
T ss_pred HHHHcCCcEEEEEEechhhhcc-------C-CCCH-HHHHHHHHHHHHHHHHHHcCCCEEEEeCchhHH
Confidence 9999999999988765432111 0 0110 000111223 45677888999999999999863
|
| >1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1 | Back alignment and structure |
|---|
Probab=98.64 E-value=1e-07 Score=96.60 Aligned_cols=109 Identities=16% Similarity=0.096 Sum_probs=74.2
Q ss_pred cceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCChHHHHHHHHHHhCC-CceEEEeChhHHHHH-H
Q 010213 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGT-VHHEFHFTVQDGIDA-I 303 (515)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg~-~~~~~~~~~~~~~~~-l 303 (515)
.+|.+++|||+|||++++++.+.. ..+.++++......|.+.|+++|+++|+ +|+++++. +++.+. +
T Consensus 15 ~KVVVA~SGGlDSSv~a~~Lke~G----------~eViavt~d~Gq~~Ele~A~~vA~~lGi~~~~VvDl~-eef~~~v~ 83 (421)
T 1vl2_A 15 EKVVLAYSGGLDTSVILKWLCEKG----------FDVIAYVANVGQKDDFVAIKEKALKTGASKVYVEDLR-REFVTDYI 83 (421)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHTT----------CEEEEEEEESSCCCCHHHHHHHHHHHTCSEEEEEECH-HHHHHHTH
T ss_pred CCEEEEeCCcHHHHHHHHHHHHCC----------CeEEEEEEEcCCHHHHHHHHHHHHHcCCceEEEEecH-HHHHHhhh
Confidence 468999999999999999998763 6788999876555799999999999999 88888874 333332 1
Q ss_pred HHHHHhhcc----CCCCcc-cchHHHHHHHHHHHhCCCeEEEeccCc
Q 010213 304 EEVIYHVET----YDVTTI-RASTPMFLMSRKIKSLGVKMVISGEGS 345 (515)
Q Consensus 304 ~~~~~~~e~----~~~~~~-~~~~~~~~l~~~a~~~g~~vlltG~Gg 345 (515)
...+..... +..... +.....-.+.+.|.+.|++.+.+|..+
T Consensus 84 ~p~i~~na~yeg~Y~~g~~l~Rp~i~~~l~~~A~~~Gad~IA~G~~~ 130 (421)
T 1vl2_A 84 FTALLGNAMYEGRYLLGTAIARPLIAKRQVEIAEKEGAQYVAHGATG 130 (421)
T ss_dssp HHHHTTTCCBTTTBCCHHHHHHHHHHHHHHHHHHHHTCSEEECCCCT
T ss_pred hHHHhcCCcccCceeCCCcccHHHHHHHHHHHHHHcCCCEEEECCee
Confidence 112211001 111000 111112345677888999999999987
|
| >2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.3e-07 Score=96.45 Aligned_cols=111 Identities=16% Similarity=0.144 Sum_probs=74.5
Q ss_pred cccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCChHHHHHHHHHHhCCC-ceEEEeChhHHHHH
Q 010213 224 TDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTV-HHEFHFTVQDGIDA 302 (515)
Q Consensus 224 ~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg~~-~~~~~~~~~~~~~~ 302 (515)
+..+|++++|||+||++++.++.+.. .++.++++.+...+|.+.|+++|+.+|++ ++++.++ +++.+.
T Consensus 4 ~~~kVvvalSGGlDSsvll~lL~e~G----------~eV~av~vd~g~~~e~e~a~~~A~~lGi~~~~vvd~~-~ef~~~ 72 (413)
T 2nz2_A 4 SKGSVVLAYSGGLDTSCILVWLKEQG----------YDVIAYLANIGQKEDFEEARKKALKLGAKKVFIEDVS-REFVEE 72 (413)
T ss_dssp -CEEEEEECCSSHHHHHHHHHHHHTT----------EEEEEEEEESSCCCCHHHHHHHHHHHTCSEEEEEECH-HHHHHH
T ss_pred CCCeEEEEEcChHHHHHHHHHHHHcC----------CEEEEEEEECCcHHHHHHHHHHHHHhCCCEEEEEeCh-HHHHHH
Confidence 34679999999999999999998752 57889998776668899999999999998 6666664 333322
Q ss_pred -HHHHHHhhccCCCC-----cccchHHHHHHHHHHHhCCCeEEEeccCc
Q 010213 303 -IEEVIYHVETYDVT-----TIRASTPMFLMSRKIKSLGVKMVISGEGS 345 (515)
Q Consensus 303 -l~~~~~~~e~~~~~-----~~~~~~~~~~l~~~a~~~g~~vlltG~Gg 345 (515)
+...+.....+... ..........+.+.|++.|++++.+|+.+
T Consensus 73 ~~~~~i~~~a~~e~~y~~g~~~aRp~i~~~l~~~A~~~Ga~~IatGh~~ 121 (413)
T 2nz2_A 73 FIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATG 121 (413)
T ss_dssp THHHHHHTTCCBTTTBCCTTTTHHHHHHHHHHHHHHHHTCSEEECCCCT
T ss_pred HHHHHHHhCcccccccccccccchHHHHHHHHHHHHHcCCCEEEECCcC
Confidence 21222211111100 00011123355677888899999999988
|
| >1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.4e-07 Score=96.05 Aligned_cols=110 Identities=15% Similarity=0.184 Sum_probs=74.1
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCChHHHHHHHHHHhCC-CceEEEeChhHHHHHH-H
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGT-VHHEFHFTVQDGIDAI-E 304 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg~-~~~~~~~~~~~~~~~l-~ 304 (515)
++++++|||+||++++.++.+.. +..+.++++......|.+.++++|+.+|+ +++++.+.. ++.+.+ .
T Consensus 2 kVvva~SGG~DSsvll~ll~~~~---------g~~V~av~vd~g~~~e~e~a~~~A~~lGi~~~~vvd~~~-ef~~~~~~ 71 (400)
T 1kor_A 2 KIVLAYSGGLDTSIILKWLKETY---------RAEVIAFTADIGQGEEVEEAREKALRTGASKAIALDLKE-EFVRDFVF 71 (400)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHH---------TCEEEEEEEESSCSSCHHHHHHHHHHHTCSEEEEEECHH-HHHHHTHH
T ss_pred cEEEEEeChHHHHHHHHHHHHhh---------CCcEEEEEEeCCCHHHHHHHHHHHHHhCCCeEEEEeCcH-HHHHHhhH
Confidence 58899999999999999998764 25788888876556789999999999999 677777642 333221 1
Q ss_pred HHHHhhcc----CCCCc-ccchHHHHHHHHHHHhCCCeEEEeccCcc
Q 010213 305 EVIYHVET----YDVTT-IRASTPMFLMSRKIKSLGVKMVISGEGSD 346 (515)
Q Consensus 305 ~~~~~~e~----~~~~~-~~~~~~~~~l~~~a~~~g~~vlltG~GgD 346 (515)
..+..... +.... .........+.+.|++.|++++++|+.+|
T Consensus 72 ~~i~~~~~~e~~y~~g~~~~R~~~~~~L~~~A~~~G~~~IatG~~~d 118 (400)
T 1kor_A 72 PMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGK 118 (400)
T ss_dssp HHHHTTCCBTTTBCCTTTTHHHHHHHHHHHHHHHHTCSEEECCCCTT
T ss_pred HHHHcCCccccccccCCccchHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 22221111 11100 01111234566778889999999999996
|
| >2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=1.4e-07 Score=95.56 Aligned_cols=113 Identities=21% Similarity=0.193 Sum_probs=74.3
Q ss_pred ccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC----------CChHHHHHHHHHHhCCCceEEEe
Q 010213 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG----------SPDLKYAKEVADYLGTVHHEFHF 294 (515)
Q Consensus 225 ~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~----------~~d~~~A~~va~~lg~~~~~~~~ 294 (515)
..+|.+.+|||+||+++++++.+.. .++.++++.... ..|...|+++|+.+|++++++.+
T Consensus 17 ~~kVvVa~SGGvDSsv~a~lL~~~G----------~~V~~v~~~~~~~~~~~~~~~s~~d~~~a~~va~~LGIp~~vvd~ 86 (380)
T 2der_A 17 AKKVIVGMSGGVDSSVSAWLLQQQG----------YQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLGIELHTVNF 86 (380)
T ss_dssp CCEEEEECCSCSTTHHHHHHHHTTC----------CEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCEEEEEEEChHHHHHHHHHHHHcC----------CeEEEEEEEcCccccccCCCCCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 4578999999999999999998753 578888875421 13678899999999999999987
Q ss_pred ChhHHHHHH-HHHHH---hhccCCCCcccchH-HHHHHHHHHHh-CCCeEEEeccCcccc
Q 010213 295 TVQDGIDAI-EEVIY---HVETYDVTTIRAST-PMFLMSRKIKS-LGVKMVISGEGSDEI 348 (515)
Q Consensus 295 ~~~~~~~~l-~~~~~---~~e~~~~~~~~~~~-~~~~l~~~a~~-~g~~vlltG~GgDel 348 (515)
+.+ +.+.+ ...+. ...+++++..++.. -+..+.+.|.+ .|++.+.||+.+|..
T Consensus 87 ~~~-f~~~v~~~~~~ey~~G~tpnpc~~Cnr~ik~~~l~~~A~~~~Gad~IatGH~a~d~ 145 (380)
T 2der_A 87 AAE-YWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVRRA 145 (380)
T ss_dssp HHH-HHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHHTTCCSEEECCCSCEEE
T ss_pred cHH-HHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhcCCCEEEEccccccc
Confidence 542 22211 11111 11223321111111 11245566777 899999999999864
|
| >3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0 | Back alignment and structure |
|---|
Probab=98.51 E-value=9.1e-08 Score=92.41 Aligned_cols=141 Identities=11% Similarity=0.094 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhcccccc-ccCCCceeeEEeecCCCChHHHHHHHHHHhCC
Q 010213 209 VLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAA-RQWGTQLHSFCVGLEGSPDLKYAKEVADYLGT 287 (515)
Q Consensus 209 ~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~-~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg~ 287 (515)
.+.+.|.+.+++. ....+.+.||||+||+++++++++....-.+. ...+.++.++++.+....+...|+++|+.+|+
T Consensus 26 ~~v~~L~d~l~~~--g~~~vvvglSGGvDSal~a~l~~~A~~~Lg~~~~~~~~~v~av~~p~~~~~~~~~A~~~a~~lgi 103 (279)
T 3q4g_A 26 RRVAFIKRKLTEA--RYKSLVLGISGGVDSTTCGRLAQLAVEELNQQHNTTEYQFIAVRLPYGEQKDEDEAQLALSFIRP 103 (279)
T ss_dssp HHHHHHHHHHHHH--TCCEEEEECCSSHHHHHHHHHHHHHHHHHHHHTTCSCCEEEEEECCSSSCSCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHc--CCCCEEEEccCCHHHHHHHHHHHHHHHHhCcccccCCceEEEEEecCCChHHHHHHHHHHHHhCC
Confidence 3334444444432 12467889999999999999876542100000 00013577788776545678999999999999
Q ss_pred -CceEEEeChhHHHHHHHH----HHH-hh-----ccCCCC---cccchHHHHHHHHHHHhCCCeEEEeccCccccccCCc
Q 010213 288 -VHHEFHFTVQDGIDAIEE----VIY-HV-----ETYDVT---TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYL 353 (515)
Q Consensus 288 -~~~~~~~~~~~~~~~l~~----~~~-~~-----e~~~~~---~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~ 353 (515)
+|+++++++ ..+.+.. ... .. ..+... .+.....+-.++..|.+.|.-|+=||+ .+|++.||.
T Consensus 104 ~~~~~i~i~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~NiqaR~R~~~Ly~~A~~~g~lVlgTgn-~sE~~~Gy~ 180 (279)
T 3q4g_A 104 THSVSVNIKA--GVDGLHAASHHALANTGLIPSDPAKVDFIKGNVKARARMVAQYEIAGYVGGLVLGTDH-SAENITGFY 180 (279)
T ss_dssp SEEEECCCHH--HHHHHHHHHHHHHHHHTCSCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHTEEEBCCCC-HHHHHHTCS
T ss_pred CeEEEEECHH--HHHHHHHHHHHHhhhhcccccCCCcccchhhhHHHHHHHHHHHHHHHHCCCEEecCcc-HHhhhccch
Confidence 788877643 2332221 111 00 001110 111122344566667777875555554 457777876
Q ss_pred c
Q 010213 354 Y 354 (515)
Q Consensus 354 ~ 354 (515)
.
T Consensus 181 T 181 (279)
T 3q4g_A 181 T 181 (279)
T ss_dssp C
T ss_pred h
Confidence 5
|
| >3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=6.3e-08 Score=105.46 Aligned_cols=141 Identities=17% Similarity=0.101 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHhhccc--cceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCC--ChHHHHHHHHH
Q 010213 208 LVLRQAFENAVIKRLMTD--VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS--PDLKYAKEVAD 283 (515)
Q Consensus 208 ~~l~~~l~~aV~~rl~~~--~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~--~d~~~A~~va~ 283 (515)
+++.+.+...++.+++.. ..+.+.||||+||++.+.++++....-.. .+.++.++++..... .+...|+++|+
T Consensus 342 ~~~~~~~~~~l~~~l~~~g~~~vvvglSGGvDSsvaa~l~~~a~~~lg~---~~~~v~~v~m~~~~~~~~~~~~A~~la~ 418 (680)
T 3sdb_A 342 YEAYNIQVSGLEQRLRALDYPKVVIGVSGGLDSTHALIVATHAMDREGR---PRSDILAFALPGFATGEHTKNNAIKLAR 418 (680)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCEEEEECCSSHHHHHHHHHHHHHHHHTTC---CGGGEEEEECCC--------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCcEEEEecCCccHHHHHHHHHHHHHHhCC---CCceEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456667777777777544 46889999999999866666554310000 004688888865433 46778999999
Q ss_pred HhCCCceEEEeChhHHHHHHHHHHHh----hccCCCCc---ccchHHHHHHHHHHHhCCCeEEEeccCccccccCCcc
Q 010213 284 YLGTVHHEFHFTVQDGIDAIEEVIYH----VETYDVTT---IRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (515)
Q Consensus 284 ~lg~~~~~~~~~~~~~~~~l~~~~~~----~e~~~~~~---~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~ 354 (515)
.+|++|+++++++ ..+...+.+.. .+...... +.....+..++..+.+.|.-|+-|| ..+|++.||..
T Consensus 419 ~lgi~~~~i~i~~--~~~~~~~~l~~~~~~~~~~~~~~~~N~~ar~R~~~l~~~A~~~g~lvlgTg-n~sE~~~Gy~T 493 (680)
T 3sdb_A 419 ALGVTFSEIDIGD--TARLMLHTIGHPYSVGEKVYDVTFENVQAGLRTDYLFRIANQRGGIVLGTG-DLSELALGWST 493 (680)
T ss_dssp HHTCEEEECCCHH--HHHHHHHHC------------CHHHHHHHHHHHHHHHHHHHHHTEEEEECC-CHHHHHHTCSC
T ss_pred HcCCCEEEEECHH--HHHHHHHHhchhhcCCCCCcchhHHHhhHHHHHHHHHHHHHHcCCEEEeCC-cHHhHhcCeee
Confidence 9999998877653 22222111100 00001001 1111222344555666676555555 45677778854
|
| >1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=5.6e-07 Score=92.23 Aligned_cols=112 Identities=17% Similarity=0.085 Sum_probs=74.0
Q ss_pred hccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--CChHHHHHHHHHHhCC-CceEEEeChhH
Q 010213 222 LMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGT-VHHEFHFTVQD 298 (515)
Q Consensus 222 l~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--~~d~~~A~~va~~lg~-~~~~~~~~~~~ 298 (515)
+....+|.+++|||+||++++.++.+.. ..+.++++.... ..|.+.|+++|+.+|+ +|+++.+. ++
T Consensus 7 l~~~~KVvVA~SGGlDSSvll~~L~e~G----------~eViavtvd~Gq~~~~ele~a~~~A~~lGi~~~~vvD~~-ee 75 (455)
T 1k92_A 7 LPVGQRIGIAFSGGLDTSAALLWMRQKG----------AVPYAYTANLGQPDEEDYDAIPRRAMEYGAENARLIDCR-KQ 75 (455)
T ss_dssp CCTTSEEEEECCSSHHHHHHHHHHHHTT----------CEEEEEEEECCCTTCSCTTHHHHHHHHHTCSEEEEEECH-HH
T ss_pred hcCCCeEEEEEcChHHHHHHHHHHHHcC----------CEEEEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEeCh-HH
Confidence 4456689999999999999999998752 578888876543 3588999999999999 78888874 33
Q ss_pred HHHHHHHHHHhhccC--CCC-cccchH------HHHHHHHHHHhCCCeEEEeccC
Q 010213 299 GIDAIEEVIYHVETY--DVT-TIRAST------PMFLMSRKIKSLGVKMVISGEG 344 (515)
Q Consensus 299 ~~~~l~~~~~~~e~~--~~~-~~~~~~------~~~~l~~~a~~~g~~vlltG~G 344 (515)
+.+.+-..+.....+ ... +..... ..-.+.+.|++.|++.+.+|+.
T Consensus 76 f~~~v~p~i~~na~y~~eg~rcY~l~t~~aRp~i~~~l~e~A~e~Gad~IAtGht 130 (455)
T 1k92_A 76 LVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGST 130 (455)
T ss_dssp HHHHHHHHHHHTCCCCEETTEECCCHHHHHHHHHHHHHHHHHHHTTCCEEECCCC
T ss_pred HHHHhHHHHHcCCcccccCceecccCCcchHHHHHHHHHHHHHHcCCCEEEECCc
Confidence 332211222211111 000 001111 1234567788899999999995
|
| >3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.8e-06 Score=90.03 Aligned_cols=120 Identities=12% Similarity=0.037 Sum_probs=78.2
Q ss_pred HHHHHHHh--hccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCC-----ChHHHHHHHHHHhC
Q 010213 214 FENAVIKR--LMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS-----PDLKYAKEVADYLG 286 (515)
Q Consensus 214 l~~aV~~r--l~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~-----~d~~~A~~va~~lg 286 (515)
+.+.+++. +....++.|++|||.||++++.++.+..... +.++.++++..... .|..+++++|+.+|
T Consensus 5 v~~~i~~~~l~~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~------~~~v~avhvdhglrg~~s~~~~~~v~~~~~~lg 78 (464)
T 3a2k_A 5 VRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSLRDEW------KLQVIAAHVDHMFRGRESEEEMEFVKRFCVERR 78 (464)
T ss_dssp HHHHHHHTCSSSCSSBEEEECCSSHHHHHHHHHHHHHHHTT------TCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCCEEEEEEcCcHHHHHHHHHHHHHHHHc------CCeEEEEEEECCCCccccHHHHHHHHHHHHHcC
Confidence 44455543 4556789999999999999999998754221 35677777754322 36678999999999
Q ss_pred CCceEEEeChhHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccc
Q 010213 287 TVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 347 (515)
Q Consensus 287 ~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDe 347 (515)
++++.+.++...+.+. ...............++.+.+.+.|+++++||+-+|.
T Consensus 79 i~~~v~~~~~~~~~~~--------~~~~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~dD 131 (464)
T 3a2k_A 79 ILCETAQIDVPAFQRS--------AGLGAQEAARICRYRFFAELMEKHQAGYVAVGHHGDD 131 (464)
T ss_dssp CEEEEEECCCHHHHTT--------TTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCCHHH
T ss_pred CcEEEEEechhhhhhc--------cCCCHHHHHHHHHHHHHHHHHHHcCcCEEEEeCChHH
Confidence 9999988764321110 0011000000111234556778889999999999885
|
| >3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0 | Back alignment and structure |
|---|
Probab=98.31 E-value=4.4e-07 Score=87.66 Aligned_cols=134 Identities=16% Similarity=0.126 Sum_probs=76.2
Q ss_pred HHHHHHHHHhhcc--ccceEEeecCCcchHHHHHHHHHH---hccccccccCCC--ceeeEEeecCCCChHHHHHHHHHH
Q 010213 212 QAFENAVIKRLMT--DVPFGVLLSGGLDSSLVASITARH---LAGTKAARQWGT--QLHSFCVGLEGSPDLKYAKEVADY 284 (515)
Q Consensus 212 ~~l~~aV~~rl~~--~~~v~v~LSGGlDSs~iaa~a~~~---~~~~~~~~~~~~--~i~~~t~~~~~~~d~~~A~~va~~ 284 (515)
+.+...++.++.. ...+.+.||||+||+++++++++. +..+ +. .+.++++.+....|...|+++|+.
T Consensus 31 ~~~v~~L~d~l~~~g~~~vvvglSGGiDSal~a~La~~A~daLG~~------~~~~~viav~~p~~~~~~~~dA~~~a~~ 104 (285)
T 3dpi_A 31 ERRIGFVADYLRTAGLRACVLGISGGIDSSTAGRLAQLAVERLRAS------GYDARFVAMRLPYGAQHDEADARRALAF 104 (285)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHT------TCCCEEEEEECCSCC---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcEEEEccCChhHHHHHHHHHHHHHHhccc------CcccEEEEEEcCCCCHHHHHHHHHHHHH
Confidence 3334556666543 246889999999999998776653 2211 12 466777655433567889999999
Q ss_pred hC-CCceEEEeChhHHHHHHHHHHHhh-ccCC--------CCcccchHHHHHHHHHHHhCCCeEEEeccCccccccCCcc
Q 010213 285 LG-TVHHEFHFTVQDGIDAIEEVIYHV-ETYD--------VTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (515)
Q Consensus 285 lg-~~~~~~~~~~~~~~~~l~~~~~~~-e~~~--------~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~ 354 (515)
+| ++|+++++++ ..+.+.+.+... .++. ..++.....+-.++..|.+.|.-|+-||+-+ |++.||..
T Consensus 105 lg~i~~~~i~i~~--~~~~~~~~l~~~g~~~~~~~~~~~~~~NiqaR~Rm~~L~~~A~~~g~lVlgTgn~s-E~~~Gy~T 181 (285)
T 3dpi_A 105 VRADETLTVDVKP--AADAMLAALAAGGLAYLDHAQQDFVLGNIKARERMIAQYAVAGARNGVVIGTDHAA-ESVMGFFT 181 (285)
T ss_dssp HCCSEEEECCCHH--HHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCCHH-HHHHHHHH
T ss_pred cCCCcEEEEEChH--HHHHHHHHHHhcCccccccCCCchhhhhHHHHHHHHHHHHHHHHCCCEEEeCccHH-hhhCCccc
Confidence 99 6888877643 233322222110 0110 0011122334456677788888666676554 56666644
|
| >3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.25 E-value=2e-06 Score=91.11 Aligned_cols=123 Identities=17% Similarity=0.148 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeec--CCCChHHHHHH-HHHHh
Q 010213 209 VLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL--EGSPDLKYAKE-VADYL 285 (515)
Q Consensus 209 ~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~--~~~~d~~~A~~-va~~l 285 (515)
.+.+.+.+.++..+.. .++.+.||||+||+++++++.+.. |.++.++++.. ....|...+.+ +|+++
T Consensus 215 ~~~~~~i~~i~~~v~~-~kvlvalSGGvDSsvla~ll~~~~---------G~~v~av~vd~g~~~~~e~~~~~~~~a~~l 284 (527)
T 3tqi_A 215 HIIEDSIRDIQEKVGK-EQVIVGLSGGVDSAVTATLVHKAI---------GDQLVCVLVDTGLLRLNEVDEVLNVFQKHL 284 (527)
T ss_dssp HHHHHHHHHHHHHHTT-SCEEEECTTTHHHHHHHHHHHHHH---------GGGEEEEEECCSCSCTTHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHhcCC-CeEEEEEecCcCHHHHHHHHHHHh---------CCeEEEEEeccCCCChhHHHHHHHHHHHHc
Confidence 4444444556665544 679999999999999999998874 25788888743 33467777765 99999
Q ss_pred CCCceEEEeChhHHHHHHHHHHHhhccCCCCcc-cc---hHHHHHHHHHHHhCCCeEEEeccCccccc
Q 010213 286 GTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTI-RA---STPMFLMSRKIKSLGVKMVISGEGSDEIF 349 (515)
Q Consensus 286 g~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~-~~---~~~~~~l~~~a~~~g~~vlltG~GgDelf 349 (515)
|++++.+.++.. +.+. ......+.. +. ......+.+.|++.|++.+++|+..|.+.
T Consensus 285 gi~~~vv~~~~~-~~~~-------l~g~~~~~~~r~~~~~~~~~~~~~~A~~~g~~~la~Gh~~dD~~ 344 (527)
T 3tqi_A 285 GAKVICVDAKDR-FMKA-------LKGISDPEEKRKIAGEQFIRVFEEQAKKLNVKWLGQGTIYPDVI 344 (527)
T ss_dssp CCEEEEECCHHH-HHSS-------SSSCCCHHHHHHHHHHHHHHHHHHTTTTTTCCEEECCCCHHHHH
T ss_pred CCcEEEEeChHH-HHHh-------hcCCCChhhhhhhhHHHHHHHHHHHHHHcCCCEEEccccCCccc
Confidence 999988765422 1110 110000000 00 01112334667788999999999888764
|
| >1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=1.6e-06 Score=91.73 Aligned_cols=125 Identities=17% Similarity=0.121 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--CChHHHHHH-HHH
Q 010213 207 PLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKE-VAD 283 (515)
Q Consensus 207 ~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--~~d~~~A~~-va~ 283 (515)
.+.+.+.+.+.++..+.. .++.+.||||+||+++++++++.. |.++.++++.... ..|.+.+.+ +|+
T Consensus 210 ~~~~~~~~~~~ir~~v~~-~~vvvalSGGvDSsv~a~ll~~a~---------G~~v~av~v~~g~~~~~e~~~~~~~la~ 279 (525)
T 1gpm_A 210 PAKIIDDAVARIREQVGD-DKVILGLSGGVDSSVTAMLLHRAI---------GKNLTCVFVDNGLLRLNEAEQVLDMFGD 279 (525)
T ss_dssp HHHHHHHHHHHHHHHHTT-CEEEEECCSSHHHHHHHHHHHHHH---------GGGEEEEEEECSCSCTTHHHHHHHHHTT
T ss_pred HHHHHHhhhhhhhhhhcc-cceEEEecCCCCHHHHHHHHHHHh---------CCCEEEEEEeCCCCCchHHHHHHHHHHH
Confidence 345555556666666644 679999999999999999998874 2478888876432 357777765 899
Q ss_pred HhCCCceEEEeChhHHHHHHHHHHHhhccCCC-CcccchHHHHHHHHHHHhC-CCeEEEeccCcc
Q 010213 284 YLGTVHHEFHFTVQDGIDAIEEVIYHVETYDV-TTIRASTPMFLMSRKIKSL-GVKMVISGEGSD 346 (515)
Q Consensus 284 ~lg~~~~~~~~~~~~~~~~l~~~~~~~e~~~~-~~~~~~~~~~~l~~~a~~~-g~~vlltG~GgD 346 (515)
++|++++.+.++. .+.+.+.. ...+.. ..+........+.+.|++. |++.+++|+..|
T Consensus 280 ~lgi~~~~v~~~~-~f~~~l~~----~~~pe~~~~~~~~~~~~~l~~~A~~~~g~~~l~~Gt~~~ 339 (525)
T 1gpm_A 280 HFGLNIVHVPAED-RFLSALAG----ENDPEAKRKIIGRVFVEVFDEEALKLEDVKWLAQGTIYP 339 (525)
T ss_dssp TTCCCEEEEECHH-HHHHHHTT----CCCHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECCCCHH
T ss_pred HhCCcEEEEeccH-HHHHhhcC----CCChHHhhhhhhHHHHHHHHHHHHhcCCCCEEEeCCCCc
Confidence 9999999988753 22222111 111100 0000001122345667777 899999999644
|
| >2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=4e-06 Score=88.34 Aligned_cols=125 Identities=15% Similarity=0.072 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC--CCChHHHHHHHHHHh
Q 010213 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVADYL 285 (515)
Q Consensus 208 ~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~--~~~d~~~A~~va~~l 285 (515)
+.+.+...+.++..+.. .++.+.+|||+||+++++++.+.. .++.++++... ...|.+.++++|+.+
T Consensus 193 ~~~~~~~i~~ir~~~~~-~kvvvalSGGvDSsvla~ll~~~g----------~~v~av~vd~g~~~~~e~~~v~~~~~~l 261 (503)
T 2ywb_A 193 EHVLEELLREVRERAGK-DRVLLAVSGGVDSSTLALLLAKAG----------VDHLAVFVDHGLLRLGEREEVEGALRAL 261 (503)
T ss_dssp HHHHHHHHHHHHHHHTT-SEEEEEECSSHHHHHHHHHHHHHT----------CEEEEEEEECSCSCTTHHHHHHHHHHHT
T ss_pred hhhhHHHHHhhhhhccC-ccEEEEecCCcchHHHHHHHHHcC----------CeEEEEEEeCCCCChHHHHHHHHHHHHh
Confidence 34444444555555543 579999999999999999998863 57888887543 346889999999999
Q ss_pred CCCceEEEeChhHHHHHHHHHHHhhccCCC-CcccchHHHHHHHHHHHhC-CCeEEEeccCcccc
Q 010213 286 GTVHHEFHFTVQDGIDAIEEVIYHVETYDV-TTIRASTPMFLMSRKIKSL-GVKMVISGEGSDEI 348 (515)
Q Consensus 286 g~~~~~~~~~~~~~~~~l~~~~~~~e~~~~-~~~~~~~~~~~l~~~a~~~-g~~vlltG~GgDel 348 (515)
|++++.+.++. .+.+.+. ....+.. ..+........+.+.|++. |++.+++|+..|.+
T Consensus 262 gi~~~vv~~~~-~f~~~l~----g~~~pe~~r~~~~~~~~~~l~~~A~~~~g~~~la~G~~~~D~ 321 (503)
T 2ywb_A 262 GVNLLVVDAKE-RFLKALK----GVEDPEEKRKIIGREFVAAFSQVARERGPFRFLAQGTLYPDV 321 (503)
T ss_dssp TCCEEEEECHH-HHHHHHT----TCCCHHHHHHHHHHHHHHHHHHHHHHHCCCSEEECCCCHHHH
T ss_pred CCCEEEEECcH-HHHHhhc----CCCChHHHhhhhhHHHHHHHHHHHHhcCCCCEEEECCcCccc
Confidence 99999988643 1222111 0000100 0000001112344556666 89999999976543
|
| >3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=98.15 E-value=5.6e-06 Score=89.56 Aligned_cols=145 Identities=17% Similarity=0.149 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHhhcc--ccceEEeecCCcchHHHHHHH-------HHHhcccccccc--------C----CC-----
Q 010213 207 PLVLRQAFENAVIKRLMT--DVPFGVLLSGGLDSSLVASIT-------ARHLAGTKAARQ--------W----GT----- 260 (515)
Q Consensus 207 ~~~l~~~l~~aV~~rl~~--~~~v~v~LSGGlDSs~iaa~a-------~~~~~~~~~~~~--------~----~~----- 260 (515)
.+++...+...++.+++. ...+.+.||||+|||++|+++ .+.+..++.... . ..
T Consensus 283 ~~~~~~~~~~~l~d~~~~~g~~~vvlglSGGvDSsv~A~Lv~~~~~~a~~alG~~~v~~~~~~~~~~~~~~~~~~~~~~~ 362 (634)
T 3ilv_A 283 EFEFWEATSLGLFDYMRKSRSKGFVLSLSGGADSSACAIMVAEMIRKGLKELGLTAFLQKSNMETLFDLPALQHLPFEEQ 362 (634)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCGGGCCSSCSSCTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHhCchhhhhhhhcccccccccccccccccc
Confidence 456666666666666643 356889999999999999983 333321100000 0 00
Q ss_pred -------ceeeEEeecCCC--ChHHHHHHHHHHhCCCceEEEeChhHHHHHHHHHHHh-h-ccCCCC----cccc---hH
Q 010213 261 -------QLHSFCVGLEGS--PDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYH-V-ETYDVT----TIRA---ST 322 (515)
Q Consensus 261 -------~i~~~t~~~~~~--~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l~~~~~~-~-e~~~~~----~~~~---~~ 322 (515)
-++++.++...+ .+...|+++|+.+|++|+++++.+ ..+.+.+.+.. . .++... ...+ ..
T Consensus 363 ~~~~~~~~~~~v~m~~~~ss~~~~~dA~~la~~LGi~~~~IdI~~--~~~~~~~~~~~~~g~~p~~~~~~~~~~N~qaR~ 440 (634)
T 3ilv_A 363 AKKITAVFLTTAYQSTRNSGDETYTSAKTLAESIGATFYNWSVDE--EIEQYKATIENVIERPLTWEKDDITLQNIQARG 440 (634)
T ss_dssp HHHHHHHHEEEEEEECTTCCSHHHHHHHHHHHHHTCEEEEEECHH--HHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHT
T ss_pred hhHhhhheeeeeecCCCCCCHHHHHHHHHHHHHhCCcEEEEccHH--HHHHHHHHHHHhhCCCcccccCcchhhhhhHHH
Confidence 056777765544 356789999999999999988753 22222221111 1 111100 0001 01
Q ss_pred HHHHHHHHHHhCCCeEEEeccCccccccCCcc
Q 010213 323 PMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (515)
Q Consensus 323 ~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~ 354 (515)
.+-.++..|.+.|..|+-||+ -||+.-||..
T Consensus 441 R~~~l~~~A~~~g~lvlgTgn-ksE~~~Gy~T 471 (634)
T 3ilv_A 441 RAPIIWMLTNVKQALLITTSN-RSEGDVGYAT 471 (634)
T ss_dssp THHHHHHHHHHHTCEEBCCCC-HHHHHTTCSC
T ss_pred HHHHHHHHHHhcCCEEeccCc-hhhHhhCCcc
Confidence 112344556667886666654 5677778754
|
| >1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2 | Back alignment and structure |
|---|
Probab=98.14 E-value=9.5e-06 Score=75.56 Aligned_cols=119 Identities=11% Similarity=0.067 Sum_probs=72.6
Q ss_pred HHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--CChHHHHHHHHHHhCCCce
Q 010213 213 AFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGTVHH 290 (515)
Q Consensus 213 ~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--~~d~~~A~~va~~lg~~~~ 290 (515)
.+..+++.. ..++.|.+|||.||++++.++.+.. .++..+++...- ..+..+++++|+.+|++++
T Consensus 35 ~l~~~~~~~---~~~v~Va~SGGkDS~vLL~ll~~~~----------~~v~~v~vd~g~~~~e~~~~v~~~~~~~gi~~~ 101 (215)
T 1sur_A 35 RVAWALDNL---PGEYVLSSSFGIQAAVSLHLVNQIR----------PDIPVILTDTGYLFPETYRFIDELTDKLKLNLK 101 (215)
T ss_dssp HHHHHHHHC---CSEEEEECCCCTTHHHHHHHHHHHS----------TTCEEEEEECSCBCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHc---CCCEEEEecCCHHHHHHHHHHHHhC----------CCCeEEEeeCCCCCHHHHHHHHHHHHHhCCcEE
Confidence 444444432 2479999999999999999998874 456667665432 2356889999999999999
Q ss_pred EEEeChhHHHHHHHHHHHhhccCCC-CcccchHH----HHHHHHHHHhCCCeEEEeccCcccc
Q 010213 291 EFHFTVQDGIDAIEEVIYHVETYDV-TTIRASTP----MFLMSRKIKSLGVKMVISGEGSDEI 348 (515)
Q Consensus 291 ~~~~~~~~~~~~l~~~~~~~e~~~~-~~~~~~~~----~~~l~~~a~~~g~~vlltG~GgDel 348 (515)
.+..+.. ....... . ...+.. +..+.... ...+.+.+++.|+.++++|+-.|+-
T Consensus 102 v~~~~~~-~~~~~~~--~-g~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~~~~i~~G~r~dd~ 160 (215)
T 1sur_A 102 VYRATES-AAWQEAR--Y-GKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQS 160 (215)
T ss_dssp EEECSSC-HHHHHHH--H-CCGGGSHHHHHHHHHHHHTHHHHHHHHHHTTEEEEECCCCTTSS
T ss_pred EEeCCCC-HHHHHHh--c-CCCCCCCccHHHHHHHHHHHHHHHHHHHhcCCceEEEEeehhhh
Confidence 8876532 1111111 0 011100 00000000 0123456677888899999999883
|
| >2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=7.5e-06 Score=83.96 Aligned_cols=108 Identities=19% Similarity=0.219 Sum_probs=70.4
Q ss_pred ccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC-C--ChHHHHHHHHHHh-----CCCceEEEeCh
Q 010213 225 DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG-S--PDLKYAKEVADYL-----GTVHHEFHFTV 296 (515)
Q Consensus 225 ~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~-~--~d~~~A~~va~~l-----g~~~~~~~~~~ 296 (515)
..++.+++|||+||+++++++.+.. .++.++++.... . .+...++++|+.+ |++++.++++.
T Consensus 187 ~~kvlvalSGGvDS~vll~ll~~~G----------~~v~av~v~~~~~~~~~~~~~v~~~a~~l~~~~ggi~~~vv~~~~ 256 (413)
T 2c5s_A 187 GGKVMVLLSGGIDSPVAAYLTMKRG----------VSVEAVHFHSPPFTSERAKQKVIDLAQELTKYCKRVTLHLVPFTE 256 (413)
T ss_dssp TEEEEEECCSSSHHHHHHHHHHHBT----------EEEEEEEEECTTTSCHHHHHHHHHHHHHHGGGSSCEEEEEEECHH
T ss_pred CCeEEEEeCCCChHHHHHHHHHHcC----------CcEEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcH
Confidence 3568899999999999999998742 578888876531 2 3567788889988 89999888653
Q ss_pred hHHHHHHHHHHHhhccCCCCcccchHHHH-HHHHHHHhCCCeEEEeccCcccc
Q 010213 297 QDGIDAIEEVIYHVETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDEI 348 (515)
Q Consensus 297 ~~~~~~l~~~~~~~e~~~~~~~~~~~~~~-~l~~~a~~~g~~vlltG~GgDel 348 (515)
.. ..+.. ... ....+...-..++ .+.+.|.+.|+..++||+..|.+
T Consensus 257 ~~--~~i~~---~~~-~~~~c~~~Rr~~~~~~~~~A~~~g~~~I~tG~~~dD~ 303 (413)
T 2c5s_A 257 VQ--KTINK---EIP-SSYSMTVMRRMMMRITERIAEERNALAITTGESLGQV 303 (413)
T ss_dssp HH--HHHHH---HSC-GGGHHHHHHHHHHHHHHHHHHHTTCCEEECCCCSSST
T ss_pred HH--HHHHh---cCC-cccHHHHHHHHHHHHHHHHHHHcCCCEEEEcccchhh
Confidence 21 11111 111 0000010111223 34567888999999999998865
|
| >2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.07 E-value=3.2e-05 Score=84.08 Aligned_cols=80 Identities=19% Similarity=0.164 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--CChHHHHHHHHHH
Q 010213 207 PLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADY 284 (515)
Q Consensus 207 ~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--~~d~~~A~~va~~ 284 (515)
.+.+.+.+.+.++..+. +.++.+.||||+||+++++++.+.... .++.++++.... ..|.+.|+++|+.
T Consensus 223 ~~~~~~~~i~~Ir~~v~-~~~vvv~lSGGvDSsVla~Ll~~alG~--------~~V~aV~vd~g~~~~~e~e~a~~~a~~ 293 (697)
T 2vxo_A 223 VQNRELECIREIKERVG-TSKVLVLLSGGVDSTVCTALLNRALNQ--------EQVIAVHIDNGFMRKRESQSVEEALKK 293 (697)
T ss_dssp HHHHHHHHHHHHHHHHT-TCEEEEECCSSHHHHHHHHHHHHHSCG--------GGEEEEEEECSCCCSSTTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhc-ccceEEEccCchHHHHHHHHHHHhcCC--------ceEEEEEeccccCCcchHHHHHHHHHH
Confidence 34555566666776664 467999999999999999999987521 478888876543 4688999999999
Q ss_pred hCCCceEEEeC
Q 010213 285 LGTVHHEFHFT 295 (515)
Q Consensus 285 lg~~~~~~~~~ 295 (515)
+|++++.+.++
T Consensus 294 lGI~~~vvdi~ 304 (697)
T 2vxo_A 294 LGIQVKVINAA 304 (697)
T ss_dssp TTCCEEEEECH
T ss_pred hCCcEEEecch
Confidence 99999998875
|
| >1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1 | Back alignment and structure |
|---|
Probab=98.01 E-value=2e-05 Score=81.31 Aligned_cols=112 Identities=14% Similarity=0.143 Sum_probs=71.2
Q ss_pred HHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC---C-ChHHHHHHHHHHhCCCceEE
Q 010213 217 AVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG---S-PDLKYAKEVADYLGTVHHEF 292 (515)
Q Consensus 217 aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~---~-~d~~~A~~va~~lg~~~~~~ 292 (515)
.+.+.+....+|.|++|||.||++++.++.+..... .+.++.++++...- + .|..+++++|+.+|++++++
T Consensus 5 ~l~~~l~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~-----~g~~v~avhvdhglr~~s~~~~~~v~~~~~~lgi~~~v~ 79 (433)
T 1ni5_A 5 TLNRQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN-----PGVALRAIHVHHGLSANADAWVTHCENVCQQWQVPLVVE 79 (433)
T ss_dssp HHHHHHTTCSEEEEECCSBHHHHHHHHHHHHHHTTS-----TTCEEEEEEECCSCCSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred hHHHhcCCCCEEEEEEcchHHHHHHHHHHHHHHHhc-----CCCeEEEEEEECCCCcccHHHHHHHHHHHHHcCCcEEEE
Confidence 344555667789999999999999999998754220 13467777775432 1 25778999999999999988
Q ss_pred EeChhHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccc
Q 010213 293 HFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 347 (515)
Q Consensus 293 ~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDe 347 (515)
.++... ....... ......|.+...+.+ ++++++||+.+|.
T Consensus 80 ~~~~~~------------~~~~~e~-~aR~~Ry~~l~~~a~-~~~~i~tgH~~dD 120 (433)
T 1ni5_A 80 RVQLAQ------------EGLGIEA-QARQARYQAFARTLL-PGEVLVTAQHLDD 120 (433)
T ss_dssp CCCCCC------------SSSTTTT-HHHHHHHHHHHHTCC-TTEEEECCCCHHH
T ss_pred EecCCC------------CCCCHHH-HHHHHHHHHHHHHHh-hCCeEEeeccchH
Confidence 765320 0001000 011122333333322 4899999999886
|
| >4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.95 E-value=6.3e-05 Score=80.15 Aligned_cols=139 Identities=18% Similarity=0.178 Sum_probs=92.3
Q ss_pred cHHHHHHHHHHHHHHhhccc--cceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCCh--HHHHHHH
Q 010213 206 DPLVLRQAFENAVIKRLMTD--VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPD--LKYAKEV 281 (515)
Q Consensus 206 ~~~~l~~~l~~aV~~rl~~~--~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d--~~~A~~v 281 (515)
..+++.+.+.-.++.+++.. ..+.+-||||+||+++++++.+.+.. .++.++++....+.+ ...|+.+
T Consensus 279 ~~~~~~~a~~~gl~dy~~k~g~~~~vlglSGGiDSal~~~la~~alg~--------~~v~~v~mp~~~ts~~t~~~a~~l 350 (565)
T 4f4h_A 279 VEAQVYRALVLGVRDYIGKNGFPGAIIGLSGGVDSALVLAVAVDALGA--------ERVRAVMMPSRYTAGISTTDAADM 350 (565)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCEEEECCSSHHHHHHHHHHHHHHCG--------GGEEEEECCCTTCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCcEEEecCCCccHHHHHHHHHHHhCC--------ccEEEEeccccccccchHHHHHHH
Confidence 34567777777788877643 45778899999999999999888743 478999987666554 4679999
Q ss_pred HHHhCCCceEEEeChhHHHHHHHHHHHhh-cc-CCCC---cccchHHHHHHHHHHHhCCCeEEEeccCccccccCCccc
Q 010213 282 ADYLGTVHHEFHFTVQDGIDAIEEVIYHV-ET-YDVT---TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYF 355 (515)
Q Consensus 282 a~~lg~~~~~~~~~~~~~~~~l~~~~~~~-e~-~~~~---~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~~ 355 (515)
|+.+|+.++++.+++ ..+.+...+... .. .... .+.+...+..++..+.+.|.-|+=||.- +|+--||..+
T Consensus 351 a~~lg~~~~~i~i~~--~~~~~~~~~~~~~~~~~~d~~~eN~qaR~R~~~l~~~an~~g~lvlgTgn~-sE~a~Gy~T~ 426 (565)
T 4f4h_A 351 ARRVGVRYDEIAIAP--MFDAFRASLAAEFAGLAEDATEENIQARIRGTLLMALSNKFGSIVLTTGNK-SEMAVGYCTL 426 (565)
T ss_dssp HHHHTCEEEECCCHH--HHHHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCH-HHHHHTCSCT
T ss_pred HHHhCCceeeeecch--HHHHHHHHhhhcccCccchhhHhhhcchhhHHHHHHHHhhcCCcccCCCch-hhHhhccccc
Confidence 999999999877643 334333332211 11 0000 1112233445666777788877777754 4677788654
|
| >3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.95 E-value=3.5e-05 Score=81.91 Aligned_cols=126 Identities=10% Similarity=0.126 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC--CCChHHHH-HHHHHH
Q 010213 208 LVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYA-KEVADY 284 (515)
Q Consensus 208 ~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~--~~~d~~~A-~~va~~ 284 (515)
+.+.+...+.++.. ..+.++.+.||||+||+++++++.+.. |.++.++++... ...|...+ +.+|++
T Consensus 239 ~~~~~~~i~~ir~~-g~~~~vvvalSGGvDSsv~a~ll~~~~---------G~~v~~v~vd~g~~~~~e~~~~~~~~~~~ 308 (556)
T 3uow_A 239 IRYHELELKNIEKY-KHDHYVIAAMSGGIDSTVAAAYTHKIF---------KERFFGIFIDNGLLRKNEAENVYTFLKST 308 (556)
T ss_dssp HHHHHHHHHHHGGG-TTTCEEEEECCSSHHHHHHHHHHHHHH---------GGGEEEEEEECSCSCTTHHHHHHHHHHHH
T ss_pred ccccccceeeeeec-CCCceEEEEcccCCCHHHHHHHHHHHh---------CCeEEEEEEecCCCChHHHHHHHHHHHHh
Confidence 44444444555555 336789999999999999999998875 257888887543 34566666 668999
Q ss_pred h-CCCceEEEeChhHHHHHHHHHHHhhccCCC-CcccchHHHHHHHHHHHhCCC----eEEEeccCcccc
Q 010213 285 L-GTVHHEFHFTVQDGIDAIEEVIYHVETYDV-TTIRASTPMFLMSRKIKSLGV----KMVISGEGSDEI 348 (515)
Q Consensus 285 l-g~~~~~~~~~~~~~~~~l~~~~~~~e~~~~-~~~~~~~~~~~l~~~a~~~g~----~vlltG~GgDel 348 (515)
+ |++|+.+.++.. +...+.. ...+.. ..+........+.+.|++.|. +.+.+|+..|.+
T Consensus 309 l~gi~~~~vd~~~~-f~~~l~g----~~~pe~kr~iig~~f~~vf~~~A~~~~~~~~~~~la~Gt~y~D~ 373 (556)
T 3uow_A 309 FPDMNITKIDASEN-FLSNLQG----VTDPEQKRKIIGKLFIEEFEKAVNNIDIDINKTFLLQGTLYPDI 373 (556)
T ss_dssp CTTSEEEEEECHHH-HHHHTTT----CCCHHHHHHHHHHHHHHHHHHHHHTTCCCGGGEEEECCCCHHHH
T ss_pred cCCCCeEEeccHHH-HHHhhcC----CCChHHHHHHHHHHHHHHHHHHHHHcCCcccccccccCccChHH
Confidence 9 999999887532 2221110 000000 000000112234556677775 889999776654
|
| >2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.78 E-value=1.6e-05 Score=76.01 Aligned_cols=108 Identities=12% Similarity=0.106 Sum_probs=66.3
Q ss_pred cceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--CChHHHHHHHHHHhCCCceEEEeChhHHHHHH
Q 010213 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGTVHHEFHFTVQDGIDAI 303 (515)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l 303 (515)
.++.+.+|||.||++++.++.+.. .++..+++...- ..+..+++++++.+|++++.+..+.. ....
T Consensus 46 ~~v~va~SGG~DS~vLL~ll~~~~----------~~v~vv~idtg~~~~et~~~~~~~~~~~gi~~~v~~~~~~--~~~~ 113 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLVNQIR----------PDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATES--AAWQ 113 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHHHHHS----------TTCEEEECCCSCBCHHHHHHHHHHHHHTTCEEEECCCSSC--HHHH
T ss_pred CCEEEEeCCCHHHHHHHHHHHHhC----------CCCeEEEecCCCCCHHHHHHHHHHHHHhCCceEEEcCCCC--HHHH
Confidence 479999999999999999998875 456667664332 23568899999999999877654421 1111
Q ss_pred HHHHHhhccCCC-CcccchHH----HHHHHHHHHhCCCeEEEeccCccc
Q 010213 304 EEVIYHVETYDV-TTIRASTP----MFLMSRKIKSLGVKMVISGEGSDE 347 (515)
Q Consensus 304 ~~~~~~~e~~~~-~~~~~~~~----~~~l~~~a~~~g~~vlltG~GgDe 347 (515)
... + ...+.. +..+.... ...+.+.+++.|+.+++||.-.|+
T Consensus 114 ~~~-~-g~~~~~~~~~~~~cc~~~K~~pl~~~l~~~~~~~~~tG~r~dd 160 (252)
T 2o8v_A 114 EAR-Y-GKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQ 160 (252)
T ss_dssp HHH-T-CCGGGSHHHHHHHHHHHHTHHHHHHHHHHTTCSEEEECCCSTT
T ss_pred HHH-c-CCccccCCchHHHHHHHHHHHHHHHHHHhcCCcEEEEeccccc
Confidence 110 0 000100 00000000 012345567778889999999988
|
| >1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2 | Back alignment and structure |
|---|
Probab=97.76 E-value=6.7e-05 Score=74.18 Aligned_cols=110 Identities=10% Similarity=0.082 Sum_probs=66.4
Q ss_pred cceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC--CCChHHHHHHHHHHhCCCceEEEeChhHHHHHH
Q 010213 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAI 303 (515)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~--~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l 303 (515)
.++.+.+|||.||++++.++.+..... +.++..+++... ......+++++++.+|++++.+..... ..
T Consensus 47 ~~ivVa~SGGkDS~vLL~Ll~~~~~~~------~~~i~vv~vDtg~~~~et~~~v~~~~~~~gi~l~v~~~~~~--~~-- 116 (325)
T 1zun_A 47 DNPVMLYSIGKDSAVMLHLARKAFFPG------KLPFPVMHVDTRWKFQEMYRFRDQMVEEMGLDLITHINPDG--VA-- 116 (325)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHTTS------CCSSCEEEECCSCCCHHHHHHHHHHHHTTTCCEEEECC---------
T ss_pred CCEEEEEcChHHHHHHHHHHHHhcccc------CCCEEEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCchH--Hh--
Confidence 478899999999999999998875321 135666766432 223568899999999999887654321 10
Q ss_pred HHHHHhhccCCC-CcccchH-HHHHHHHHHHhCCCeEEEeccCccccc
Q 010213 304 EEVIYHVETYDV-TTIRAST-PMFLMSRKIKSLGVKMVISGEGSDEIF 349 (515)
Q Consensus 304 ~~~~~~~e~~~~-~~~~~~~-~~~~l~~~a~~~g~~vlltG~GgDelf 349 (515)
. ....+.. ....... -...+.+.+++.|++++++|.-.||--
T Consensus 117 -~---G~~~~~~~~~~cc~~~K~~pL~~~l~e~g~~~i~tG~R~Des~ 160 (325)
T 1zun_A 117 -Q---GINPFTHGSAKHTDIMKTEGLKQALDKHGFDAAFGGARRDEEK 160 (325)
T ss_dssp -------------CCHHHHHHTHHHHHHHHHHHTCSEEECCCCTTSSG
T ss_pred -c---CCCccccChHHHHHHHHHHHHHHHHHHcCCCEEEEecccchhh
Confidence 0 0000100 0000000 011344556667899999999999854
|
| >2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.73 E-value=7.4e-05 Score=71.66 Aligned_cols=112 Identities=10% Similarity=0.018 Sum_probs=67.6
Q ss_pred cceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeec--CCCChHHHHHHHHHHhCC----CceEEEeChhHH
Q 010213 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL--EGSPDLKYAKEVADYLGT----VHHEFHFTVQDG 299 (515)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~--~~~~d~~~A~~va~~lg~----~~~~~~~~~~~~ 299 (515)
.++.+.+|||.||++++.++.+.... +.++..+++.. ......++++++++++|+ +++.+.......
T Consensus 42 ~~v~va~SGGkDS~vLL~ll~~~~~~-------~~~i~vv~iDtg~~~~et~~~v~~~~~~~gl~~~~~l~v~~~~~~~~ 114 (261)
T 2oq2_A 42 PHLFQTTAFGLTGLVTIDMLSKLSEK-------YYMPELLFIDTLHHFPQTLTLKNEIEKKYYQPKNQTIHVYKPDGCES 114 (261)
T ss_dssp SSEEEECCCCHHHHHHHHHHHHHTTT-------SCCCEEEEECCSCBCHHHHHHHHHHHHHHTGGGTCCCEEECSTTCSS
T ss_pred CCEEEEecCCHHHHHHHHHHHHhCcc-------CCCeeEEEecCCCCCHHHHHHHHHHHHHhCCCCCCCeEEEecCCccC
Confidence 37899999999999999999987621 02566666643 222357889999999999 887765432100
Q ss_pred HHHHHHH----HHhhccCCCCcccchH-HHHHHHHHHHhCCCeEEEeccCcccc
Q 010213 300 IDAIEEV----IYHVETYDVTTIRAST-PMFLMSRKIKSLGVKMVISGEGSDEI 348 (515)
Q Consensus 300 ~~~l~~~----~~~~e~~~~~~~~~~~-~~~~l~~~a~~~g~~vlltG~GgDel 348 (515)
...+... .+... +. ..... -...+.+.+++.|++++++|.-.||-
T Consensus 115 ~~~~~~~~G~~~~~~~-~~---~cc~~~K~~pl~~~l~~~g~~~~~tG~R~dds 164 (261)
T 2oq2_A 115 EADFASKYGDFLWEKD-DD---KYDYLAKVEPAHRAYKELHISAVFTGRRKSQG 164 (261)
T ss_dssp HHHHHHHHCTTHHHHC-HH---HHHHHHTHHHHHHHHHHTTCSEEECCCCGGGC
T ss_pred HHHHHHHhCCCccccC-hH---HHHHHHhHHHHHHHHHHcCCCEEEEeccccch
Confidence 1111110 11000 00 00000 01123455677899999999999984
|
| >1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0002 Score=70.22 Aligned_cols=80 Identities=18% Similarity=0.208 Sum_probs=58.1
Q ss_pred cceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCChHHHHHHHHHHh-------CCCceEEE-eChh
Q 010213 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYL-------GTVHHEFH-FTVQ 297 (515)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d~~~A~~va~~l-------g~~~~~~~-~~~~ 297 (515)
.++.++||| +||++.++++.+.+ ..+.+.++.. +..+...|+++|+.+ +++++.++ +.
T Consensus 180 ~kvlvllSG-vDS~vaa~ll~~~G----------~~v~~v~~~~-~~~~~~~a~~~a~~l~~~~~~~~i~~~vv~~~~-- 245 (307)
T 1vbk_A 180 GRMIGILHD-ELSALAIFLMMKRG----------VEVIPVYIGK-DDKNLEKVRSLWNLLKRYSYGSKGFLVVAESFD-- 245 (307)
T ss_dssp CEEEEECSS-HHHHHHHHHHHHBT----------CEEEEEEESC-SSHHHHHHHHHHHHHHTTCTTSCCCCEEESSHH--
T ss_pred CcEEEEEeC-CcHHHHHHHHHhCC----------CeEEEEEEEE-CHHHHHHHHHHHHHHhhhccCCCCcEEEeCCCH--
Confidence 467899999 99999999988753 6788888762 223567789999988 66666554 21
Q ss_pred HHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccc
Q 010213 298 DGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 347 (515)
Q Consensus 298 ~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDe 347 (515)
+ . + +.|.+.|++.+.||+.++.
T Consensus 246 ~---~----------------------~---~~A~~~ga~~I~tG~~~~~ 267 (307)
T 1vbk_A 246 R---V----------------------L---KLIRDFGVKGVIKGLRPND 267 (307)
T ss_dssp H---H----------------------H---HHHHHHTCCEEECCCCGGG
T ss_pred H---H----------------------H---HHHHHcCCCEEEECcccch
Confidence 0 0 0 4566779999999998754
|
| >3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00025 Score=66.37 Aligned_cols=60 Identities=17% Similarity=0.083 Sum_probs=44.5
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--------CChHHHHHHHHHHhCCCceEEEeCh
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--------SPDLKYAKEVADYLGTVHHEFHFTV 296 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--------~~d~~~A~~va~~lg~~~~~~~~~~ 296 (515)
++.+++|||.||++.++++.+.. .++.++...++. ..+.+.|+++|+.+|++++.+.++.
T Consensus 6 Kvvvl~SGGkDSs~al~~l~~~G----------~eV~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~LGIpl~~v~~~g 73 (237)
T 3rjz_A 6 DVAVLYSGGKDSNYALYWAIKNR----------FSVKFLVTMVSENEESYMYHTINANLTDLQARALGIPLVKGFTQG 73 (237)
T ss_dssp EEEEECCSSHHHHHHHHHHHHTT----------CEEEEEEEEECC--------CCSSSHHHHHHHHHTCCEEEEEC--
T ss_pred EEEEEecCcHHHHHHHHHHHHcC----------CeEEEEEEEcCCCCCccccCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 58899999999999999887653 466655432221 2456789999999999999988754
|
| >2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0035 Score=60.34 Aligned_cols=59 Identities=8% Similarity=0.169 Sum_probs=45.9
Q ss_pred cceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCC--CChHHHHHHHHHHhCCCceEEEeC
Q 010213 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEG--SPDLKYAKEVADYLGTVHHEFHFT 295 (515)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~--~~d~~~A~~va~~lg~~~~~~~~~ 295 (515)
.++.+.+| |.||++++.++.+.. .++..+++...- .....+++++++.+|++++.+...
T Consensus 55 ~~i~Va~S-GkDS~vLL~Ll~~~~----------~~i~vv~iDtg~~~~et~~~v~~~~~~~gi~l~v~~~~ 115 (275)
T 2goy_A 55 DELWISFS-GAEDVVLVDMAWKLN----------RNVKVFSLDTGRLHPETYRFIDQVREHYGIAIDVLSPD 115 (275)
T ss_dssp TTEEEECC-SSTTHHHHHHHHHHC----------TTCCEEEECCSCCCHHHHHHHHHHHHHHTCCCEEECCC
T ss_pred CCEEEEee-cHHHHHHHHHHHHhC----------CCceEEEEeCCCCCHHHHHHHHHHHHHHCCeEEEEeCC
Confidence 57999999 999999999998863 456667664332 235688999999999998876544
|
| >2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0069 Score=59.19 Aligned_cols=104 Identities=13% Similarity=0.067 Sum_probs=61.0
Q ss_pred cceEEeecCCcchHHHHHHHHHHhccc----------cc--cccCCCceeeEEeecCCC--ChHHHHHHHHHHhCCCceE
Q 010213 226 VPFGVLLSGGLDSSLVASITARHLAGT----------KA--ARQWGTQLHSFCVGLEGS--PDLKYAKEVADYLGTVHHE 291 (515)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~----------~~--~~~~~~~i~~~t~~~~~~--~d~~~A~~va~~lg~~~~~ 291 (515)
.++.+.+|||.||++++.++.+.+... +. ....+.++..+++..... ...++++++++.+|++++.
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~fpet~~fv~~~~~~ygl~l~v 133 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEETFPTLENFVLETSERYCLSLYE 133 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTCCHHHHHHHHHHHHHTTEEEEE
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 469999999999999999988763110 00 000013566776643322 3568899999999998766
Q ss_pred EEeChhHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHh-CCCeEEEeccCcccccc
Q 010213 292 FHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKS-LGVKMVISGEGSDEIFG 350 (515)
Q Consensus 292 ~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~-~g~~vlltG~GgDelf~ 350 (515)
+..... .. . .+... +.+.++. .+.+++++|.-.||-.+
T Consensus 134 ~~~~~~--~~---------~-----~l~~~-----~~~~~k~~p~~~aii~G~Rrdds~~ 172 (306)
T 2wsi_A 134 SQRQSG--AS---------V-----NMADA-----FRDFIKIYPETEAIVIGIRHTDPFG 172 (306)
T ss_dssp CCC----------------C-----CHHHH-----HHHHHHHCTTCCEEECCCCCCSSSC
T ss_pred EeCCcc--cc---------c-----cHHHH-----HHHHHhhCCCCcEEEEEEecccccc
Confidence 543210 00 0 00000 1111222 46789999999998653
|
| >3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A* | Back alignment and structure |
|---|
Probab=92.75 E-value=0.15 Score=49.25 Aligned_cols=66 Identities=12% Similarity=0.104 Sum_probs=40.0
Q ss_pred cceEEeecCCcchHHHHHHHHHHhcc-----cccc------ccC-CCceeeEEeecCC-CCh-HHHHHHHHHHhCCCceE
Q 010213 226 VPFGVLLSGGLDSSLVASITARHLAG-----TKAA------RQW-GTQLHSFCVGLEG-SPD-LKYAKEVADYLGTVHHE 291 (515)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~-----~~~~------~~~-~~~i~~~t~~~~~-~~d-~~~A~~va~~lg~~~~~ 291 (515)
..+++.+|||.||++++.++.+.+.. .+.. ... ..++..+.+.... .+| .++..++++++|++.+.
T Consensus 59 ~~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiDTG~~FpET~ef~d~~~~~ygL~L~v 138 (308)
T 3fwk_A 59 GEISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDDTFKTLENFIEETSLRYSLSLYE 138 (308)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECCCTTCCHHHHHHHHHHHHHTTEEEEE
T ss_pred CCEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEEEeCCCCCHHHHHHHHHHHHHhCCcEEE
Confidence 35899999999999999998876310 0000 000 0245566654322 234 47889999999986544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 515 | ||||
| d1ct9a1 | 324 | c.26.2.1 (A:193-516) Asparagine synthetase B, C-te | 3e-78 | |
| d1q15a1 | 296 | c.26.2.1 (A:206-501) beta-Lactam synthetase {Pecto | 7e-49 | |
| d1jgta1 | 299 | c.26.2.1 (A:210-508) beta-Lactam synthetase {Strep | 2e-48 | |
| d1ct9a2 | 192 | d.153.1.1 (A:1-192) Asparagine synthetase B, N-ter | 5e-41 | |
| d1q15a2 | 204 | d.153.1.1 (A:2-205) beta-Lactam synthetase {Pectob | 1e-31 | |
| d1jgta2 | 206 | d.153.1.1 (A:4-209) beta-Lactam synthetase {Strept | 6e-27 | |
| d1xffa_ | 238 | d.153.1.1 (A:) Glucosamine 6-phosphate synthase, N | 8e-19 | |
| d1gph12 | 234 | d.153.1.1 (1:1-234) Glutamine PRPP amidotransferas | 6e-11 | |
| d1ecfa2 | 249 | d.153.1.1 (A:1-249) Glutamine PRPP amidotransferas | 4e-08 |
| >d1ct9a1 c.26.2.1 (A:193-516) Asparagine synthetase B, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: N-type ATP pyrophosphatases domain: Asparagine synthetase B, C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 246 bits (628), Expect = 3e-78
Identities = 196/325 (60%), Positives = 246/325 (75%), Gaps = 14/325 (4%)
Query: 188 KRWYNPTWYSEAIPSTPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITAR 247
+ W++ +A+ D LRQA E++V LM+DVP+GVLLSGGLDSS++++IT +
Sbjct: 1 RDWFDY----DAVKDNVTDKNELRQALEDSVKSHLMSDVPYGVLLSGGLDSSIISAITKK 56
Query: 248 HLA----GTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAI 303
+ A + + W QLHSF VGL GSPDLK A+EVA++LGTVHHE HFTVQ+G+DAI
Sbjct: 57 YAARRVEDQERSEAWWPQLHSFAVGLPGSPDLKAAQEVANHLGTVHHEIHFTVQEGLDAI 116
Query: 304 EEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEE 363
+VIYH+ETYDVTTIRASTPM+LMSRKIK++G+KMV+SGEGSDE+FGGYLYFHKAPN +E
Sbjct: 117 RDVIYHIETYDVTTIRASTPMYLMSRKIKAMGIKMVLSGEGSDEVFGGYLYFHKAPNAKE 176
Query: 364 FHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGR 423
H ET K+ ALH YDC RANK+ SAWG+EARVPFLDK F++VAM I+P+ KM +
Sbjct: 177 LHEETVRKLLALHMYDCARANKAMSAWGVEARVPFLDKKFLDVAMRINPQDKMCGNG--K 234
Query: 424 IEKWILRKAFDDEERPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVTDKMVQNAQY 483
+EK ILR+ F YLP V +RQKEQFSDGVGYSWID LK A Q V+D+ ++ A++
Sbjct: 235 MEKHILRECF----EAYLPASVAWRQKEQFSDGVGYSWIDTLKEVAAQQVSDQQLETARF 290
Query: 484 IFPHNTPLTKEAYYYRMIFERFFPQ 508
FP+NTP +KEAY YR IFE FP
Sbjct: 291 RFPYNTPTSKEAYLYREIFEELFPL 315
|
| >d1q15a1 c.26.2.1 (A:206-501) beta-Lactam synthetase {Pectobacterium carotovorum [TaxId: 554]} Length = 296 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: N-type ATP pyrophosphatases domain: beta-Lactam synthetase species: Pectobacterium carotovorum [TaxId: 554]
Score = 168 bits (426), Expect = 7e-49
Identities = 71/312 (22%), Positives = 135/312 (43%), Gaps = 32/312 (10%)
Query: 197 SEAIPSTPYDPLV--LRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKA 254
S + + P +PL+ + + + G+ LSGGLDSSLV ++ +RH
Sbjct: 3 SNQLLALPREPLLALIDRYLNAPLEDLAPRFDTVGIPLSGGLDSSLVTALASRHFK---- 58
Query: 255 ARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYD 314
+L+++ +G E S + +++++VAD LGT H + + I+ I E IY+ E +D
Sbjct: 59 ------KLNTYSIGTELSNEFEFSQQVADALGTHHQMKILSETEVINGIIESIYYNEIFD 112
Query: 315 VTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKIKA 374
+ + +F + R+ + V +++G GSD +FGG L +
Sbjct: 113 GLSAEIQSGLFNVYRQAQG-QVSCMLTGYGSDLLFGGILKPGAQYDNPNQLLAEQVYR-- 169
Query: 375 LHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFD 434
++ A S +G++ R PF I++ A+ P++K+ + K ILR+ D
Sbjct: 170 -TRWTGEFATHGASCYGIDIRHPFWSHSLISLCHALHPDYKIFD----NEVKNILREYAD 224
Query: 435 DEERPYLPKHVLYRQKEQFSDGVG--YSWIDGLKAHAEQHVTDKM--------VQNAQYI 484
LPK +++R+K +G ++ + L + + + T +
Sbjct: 225 --SLQLLPKDIVWRKKIGIHEGSSVNQAFANVLGSTVDNYQTKSRFTYRVYQAFLRGRLS 282
Query: 485 FPHNTPLTKEAY 496
TP +
Sbjct: 283 ITDVTPSQLKDL 294
|
| >d1jgta1 c.26.2.1 (A:210-508) beta-Lactam synthetase {Streptomyces clavuligerus [TaxId: 1901]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: N-type ATP pyrophosphatases domain: beta-Lactam synthetase species: Streptomyces clavuligerus [TaxId: 1901]
Score = 167 bits (423), Expect = 2e-48
Identities = 59/299 (19%), Positives = 116/299 (38%), Gaps = 31/299 (10%)
Query: 210 LRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL 269
+R A E AV +R+ V+LSGG+DSS VA+ A + +L + +G
Sbjct: 17 VRAALEKAVAQRVTPGDTPLVVLSGGIDSSGVAAC----------AHRAAGELDTVSMGT 66
Query: 270 EGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSR 329
+ S + + A+ V D+L T H E + + + ++ E+ D I P+ + R
Sbjct: 67 DTSNEFREARAVVDHLRTRHREITIPTTELLAQLPYAVWASESVDPDIIEYLLPLTALYR 126
Query: 330 KIKSLGVKMVISGEGSDEIFGGYLYFHKAPNKEEFHRETCHKIKALHQYDCLRANKSTSA 389
+ + +++G G+D GG + P + L++ + +
Sbjct: 127 ALDG-PERRILTGYGADIPLGGMHREDRLPALDTVLAHDMATFDGLNEMSPVLST----L 181
Query: 390 WGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLPKHVLYRQ 449
G P+ D++ +++ ++++ K + +KW+LR A D LP + R
Sbjct: 182 AGHWTTHPYWDREVLDLLVSLEAGLKRRH----GRDKWVLRAAMAD----ALPAETVNRP 233
Query: 450 KEQFSDGVGYSWIDGLKAHAEQHVTDKMVQNAQYIFPHNTPLTKEAYYYRMIFERFFPQ 508
K +G G + + + V + V A+ + + P
Sbjct: 234 KLGVHEGSGTTSSF-SRLLLDHGVAEDRVHEAKRQV-------VRELFDLTVGGGRHPS 284
|
| >d1ct9a2 d.153.1.1 (A:1-192) Asparagine synthetase B, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Class II glutamine amidotransferases domain: Asparagine synthetase B, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 143 bits (362), Expect = 5e-41
Identities = 82/191 (42%), Positives = 121/191 (63%), Gaps = 1/191 (0%)
Query: 3 GILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGDQP 62
I V D+ R + LELSR ++HRGPDWSG+Y + LAH+RL+I+D +G QP
Sbjct: 2 SIFGVFDIKTDAVELRKKALELSRLMRHRGPDWSGIYASDNAILAHERLSIVDVNAGAQP 61
Query: 63 LYNEDKKIVVTVNGEIYNH-EALRERLTNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMF 121
LYN+ K V+ VNGEIYNH E ++F+TGSDC+VI LY+E G F+D L GMF
Sbjct: 62 LYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTGSDCEVILALYQEKGPEFLDDLQGMF 121
Query: 122 SFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYS 181
+F L D+ +++++ RD +GI LY+G+ G ++++SE+K L C + FP G
Sbjct: 122 AFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVCRTIKEFPAGSYLW 181
Query: 182 SKSGGLKRWYN 192
S+ G ++ +Y+
Sbjct: 182 SQDGEIRSYYH 192
|
| >d1q15a2 d.153.1.1 (A:2-205) beta-Lactam synthetase {Pectobacterium carotovorum [TaxId: 554]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Class II glutamine amidotransferases domain: beta-Lactam synthetase species: Pectobacterium carotovorum [TaxId: 554]
Score = 118 bits (297), Expect = 1e-31
Identities = 24/137 (17%), Positives = 53/137 (38%), Gaps = 7/137 (5%)
Query: 30 HRGPDWSGLYQHGDFYLAHQRLAIIDPA-SGDQPLYN-EDKKIVVTVNGEIYNHEALRER 87
++G D DF + L+ + E ++ + G +YN L
Sbjct: 8 YKGSDTDINNIQRDFDGKGEALSNGYLFIEQNGHYQKCEMERGTAYLIGSLYNRTFLIGL 67
Query: 88 LT--NHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSL 145
+ +D +++A L+ G N + + +G F F +D + V ++ G + +
Sbjct: 68 AGVWEGEAYLANDAELLALLFTRLGANALALAEGDFCFF-IDEPNGELTVITESRGFSPV 126
Query: 146 YIGWGLDGSIWISSELK 162
++ W+++ LK
Sbjct: 127 HVVQ--GKKAWMTNSLK 141
|
| >d1jgta2 d.153.1.1 (A:4-209) beta-Lactam synthetase {Streptomyces clavuligerus [TaxId: 1901]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Class II glutamine amidotransferases domain: beta-Lactam synthetase species: Streptomyces clavuligerus [TaxId: 1901]
Score = 105 bits (264), Expect = 6e-27
Identities = 39/196 (19%), Positives = 61/196 (31%), Gaps = 23/196 (11%)
Query: 16 AKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVN 75
R + R H D + L H D A + L V+
Sbjct: 17 GGRAPGPVFATRGSHTDIDTPQGERSLAATLVHAPSVAPDRA-VARSLTGAPTTAVL--A 73
Query: 76 GEIYNHEALRERLTNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIV 135
GEIYN + L L D +++ L E Y + +++G F+ V+ + ++
Sbjct: 74 GEIYNRDELLSVL-PAGPAPEGDAELVLRLLERYDLHAFRLVNGRFATVVR--TGDRVLL 130
Query: 136 ARDAIGITSLYIGWGLDGSIWISSELKGL--------NDDCEHFEA--------FPPGHL 179
A D G LY G + S+E K L + P G +
Sbjct: 131 ATDHAGSVPLYTCV-APGEVRASTEAKALAAHRDPKGFPLADARRVAGLTGVYQVPAGAV 189
Query: 180 YSSKSGGLKRWYNPTW 195
G + TW
Sbjct: 190 MDIDLGSGTAVTHRTW 205
|
| >d1xffa_ d.153.1.1 (A:) Glucosamine 6-phosphate synthase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Class II glutamine amidotransferases domain: Glucosamine 6-phosphate synthase, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 83.4 bits (205), Expect = 8e-19
Identities = 57/227 (25%), Positives = 82/227 (36%), Gaps = 47/227 (20%)
Query: 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLY---------------------- 39
CGI+ + D ++ +LE RRL++RG D +GL
Sbjct: 1 CGIVGAIAQRDVAE----ILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQ 56
Query: 40 ------QHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYNHEALRERLTN--H 91
HG +AH R A S + + IVV NG I NHE LRE L +
Sbjct: 57 AAEEHPLHGGTGIAHTRWATHGEPSEVNAHPHVSEHIVVVHNGIIENHEPLREELKARGY 116
Query: 92 KFRTGSDCDVIAHLY----------EEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIG 141
F + +D +VIAHL E + L G + V++D A
Sbjct: 117 TFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTVIMD--SRHPDTLLAARS 174
Query: 142 ITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLK 188
+ L IG G G +I+S+ L F G + +
Sbjct: 175 GSPLVIGLG-MGENFIASDQLALLPVTRRFIFLEEGDIAEITRRSVN 220
|
| >d1gph12 d.153.1.1 (1:1-234) Glutamine PRPP amidotransferase, N-terminal domain {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Class II glutamine amidotransferases domain: Glutamine PRPP amidotransferase, N-terminal domain species: Bacillus subtilis [TaxId: 1423]
Score = 60.4 bits (145), Expect = 6e-11
Identities = 48/230 (20%), Positives = 81/230 (35%), Gaps = 50/230 (21%)
Query: 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLY---------------------- 39
CG+ + G + Q L+HRG + +G+
Sbjct: 1 CGVFGIWGHEEAPQ----ITYYGLHSLQHRGQEGAGIVATDGEKLTAHKGQGLITEVFQN 56
Query: 40 -----QHGDFYLAHQRLAIID-----PASGDQPLYNEDKKIVVTVNGEIYNHEALRERLT 89
G + H R A + + + NG + N L+++L
Sbjct: 57 GELSKVKGKGAIGHVRYATAGGGGYENVQPLLFRSQNNGSLALAHNGNLVNATQLKQQLE 116
Query: 90 N--HKFRTGSDCDVIAHLYEEYG--------ENFVDMLDGMFSFVLLDTRDNSFIVARDA 139
N F+T SD +V+AHL + G +N + ML G ++F+++ + IVA D
Sbjct: 117 NQGSIFQTSSDTEVLAHLIKRSGHFTLKDQIKNSLSMLKGAYAFLIMT--ETEMIVALDP 174
Query: 140 IGITSLYIGWGLDGSIWISSELKGL-NDDCEHFEAFPPGHLYSSKSGGLK 188
G+ L IG D ++SE + PG + G+K
Sbjct: 175 NGLRPLSIGMMGDA-YVVASETCAFDVVGATYLREVEPGEMLIINDEGMK 223
|
| >d1ecfa2 d.153.1.1 (A:1-249) Glutamine PRPP amidotransferase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 249 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Class II glutamine amidotransferases domain: Glutamine PRPP amidotransferase, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 52.1 bits (124), Expect = 4e-08
Identities = 37/213 (17%), Positives = 65/213 (30%), Gaps = 58/213 (27%)
Query: 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLY---------------------- 39
CGI+ + G +Q + + L+HRG D +G+
Sbjct: 1 CGIVGIAGVMPVNQ----SIYDALTVLQHRGQDAAGIITIDANNCFRLRKANGLVSDVFE 56
Query: 40 ------QHGDFYLAHQRLAIIDPAS---GDQPLYNEDKKIVVTVNGEIYNHEALRERL-- 88
G+ + H R +S N I + NG + N LR++L
Sbjct: 57 ARHMQRLQGNMGIGHVRYPTAGSSSASEAQPFYVNSPYGITLAHNGNLTNAHELRKKLFE 116
Query: 89 -TNHKFRTGSDCDVIAHLYEEYGENFVDM----------------LDGMFSFVLLDTRDN 131
T SD +++ +++ +NF L + +
Sbjct: 117 EKRRHINTTSDSEILLNIFASELDNFRHYPLEADNIFAAIAATNRLIRGAYACVAMIIGH 176
Query: 132 SFIVARDAIGITSLYIGWGL----DGSIWISSE 160
+ RD GI L +G ++SE
Sbjct: 177 GMVAFRDPNGIRPLVLGKRDIDENRTEYMVASE 209
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 515 | |||
| d1ct9a1 | 324 | Asparagine synthetase B, C-terminal domain {Escher | 100.0 | |
| d1jgta1 | 299 | beta-Lactam synthetase {Streptomyces clavuligerus | 100.0 | |
| d1q15a1 | 296 | beta-Lactam synthetase {Pectobacterium carotovorum | 100.0 | |
| d1ct9a2 | 192 | Asparagine synthetase B, N-terminal domain {Escher | 100.0 | |
| d1jgta2 | 206 | beta-Lactam synthetase {Streptomyces clavuligerus | 100.0 | |
| d1gph12 | 234 | Glutamine PRPP amidotransferase, N-terminal domain | 100.0 | |
| d1q15a2 | 204 | beta-Lactam synthetase {Pectobacterium carotovorum | 99.97 | |
| d1xffa_ | 238 | Glucosamine 6-phosphate synthase, N-terminal domai | 99.97 | |
| d1ecfa2 | 249 | Glutamine PRPP amidotransferase, N-terminal domain | 99.97 | |
| d1te5a_ | 253 | Hypothetical protein YafJ (PA1307) {Pseudomonas ae | 99.46 | |
| d1ofda3 | 430 | Alpha subunit of glutamate synthase, N-terminal do | 99.36 | |
| d1ea0a3 | 422 | Alpha subunit of glutamate synthase, N-terminal do | 99.28 | |
| d1xnga1 | 255 | NH3-dependent NAD+-synthetase {Helicobacter pylori | 98.56 | |
| d2c5sa1 | 218 | Thiamine biosynthesis protein ThiI, C-terminal dom | 98.53 | |
| d1wy5a1 | 216 | TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId | 98.37 | |
| d1ni5a1 | 227 | tRNA-Ile-lysidine synthetase, TilS, N-terminal dom | 98.19 | |
| d1kqpa_ | 271 | NH3-dependent NAD+-synthetase {Bacillus subtilis [ | 98.16 | |
| d1gpma1 | 197 | GMP synthetase, central domain {Escherichia coli [ | 98.05 | |
| d1wxia1 | 274 | NH3-dependent NAD+-synthetase {Escherichia coli [T | 98.04 | |
| d1j20a1 | 165 | Argininosuccinate synthetase, N-terminal domain {T | 97.83 | |
| d1k92a1 | 188 | Argininosuccinate synthetase, N-terminal domain {E | 97.7 | |
| d2pg3a1 | 230 | Queuosine biosynthesis protein QueC {Erwinia carot | 97.63 | |
| d1vl2a1 | 168 | Argininosuccinate synthetase, N-terminal domain {T | 97.62 | |
| d1zuna1 | 211 | Sulfate adenylyltransferase subunit 2, CysD {Pseud | 97.15 | |
| d1sura_ | 215 | Phosphoadenylyl sulphate (PAPS) reductase {Escheri | 96.64 | |
| d2d13a1 | 226 | Hypothetical protein PH1257 {Archaeon Pyrococcus h | 95.71 | |
| d1vbka1 | 132 | Hypothetical protein PH1313, C-terminal domain {Ar | 95.52 |
| >d1ct9a1 c.26.2.1 (A:193-516) Asparagine synthetase B, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: N-type ATP pyrophosphatases domain: Asparagine synthetase B, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.3e-55 Score=438.91 Aligned_cols=304 Identities=64% Similarity=1.037 Sum_probs=264.7
Q ss_pred CCCCcHHHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccc----cccCCCceeeEEeecCCCChHHH
Q 010213 202 STPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKA----ARQWGTQLHSFCVGLEGSPDLKY 277 (515)
Q Consensus 202 ~~~~~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~----~~~~~~~i~~~t~~~~~~~d~~~ 277 (515)
+.....++++++|.+||++|+++|+|||++||||+|||+|++++++....... ...+...+.++++++++++|..+
T Consensus 11 ~~~~~~eel~~~l~~sV~~rl~sDvpig~~LSGGlDSs~Iaal~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~~~ 90 (324)
T d1ct9a1 11 DNVTDKNELRQALEDSVKSHLMSDVPYGVLLSGGLDSSIISAITKKYAARRVEDQERSEAWWPQLHSFAVGLPGSPDLKA 90 (324)
T ss_dssp TCCCCHHHHHHHHHHHHHHHTCCSSCEEEECCSSHHHHHHHHHHHHHC----------------CEEEEEESTTCHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHhccCCcEEEEecchHHHHHHHHHHHHHHhhcccccccccccCCCcccceeccCCCchHHH
Confidence 44556899999999999999999999999999999999999999987532110 01122467899999999999999
Q ss_pred HHHHHHHhCCCceEEEeChhHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccccCCccccC
Q 010213 278 AKEVADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHK 357 (515)
Q Consensus 278 A~~va~~lg~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~~~~ 357 (515)
|+.+|+++|+.|+++.++.++..+.+++++++.+.++++......+.|.+++.+++.|++|+|||+||||+||||.+|+.
T Consensus 91 a~~~a~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~~~kV~LsG~GaDElfgGY~~~~~ 170 (324)
T d1ct9a1 91 AQEVANHLGTVHHEIHFTVQEGLDAIRDVIYHIETYDVTTIRASTPMYLMSRKIKAMGIKMVLSGEGSDEVFGGYLYFHK 170 (324)
T ss_dssp HHHHHHHHTCEEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHTTCCEEECCTTHHHHHTCSGGGGG
T ss_pred HHHHHhhccccceEEEEecchHHHHHHHHHHHHhhcCCcccccccHHHHHHHHHhcCCCeEeeccccchhhhhcchhhhc
Confidence 99999999999999999999989999999998887665554556778889999999999999999999999999999988
Q ss_pred CCChHHHHHHHHHHHHhhcccccccccccccccCceeccCCCCHHHHHHHHcCCccccccCCCCCcchhHHHHHhhccCC
Q 010213 358 APNKEEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEE 437 (515)
Q Consensus 358 ~~~~~~~~~~~~~~~~~l~~~~l~r~d~~~~~~g~e~r~PflD~~lve~~~~lP~~~k~~~~~~~~~~K~lLR~a~~~~~ 437 (515)
......+.+........++.+.+.|.|+++|++|+|.|+||||++||+|+++||+++|+..+. ..+|++||++|++
T Consensus 171 ~~~~~~~~~~~~~~~~~l~~~~l~~~dr~~m~~g~E~R~PfLD~~lve~~~~lp~~~k~~~~~--~~~K~iLR~a~~~-- 246 (324)
T d1ct9a1 171 APNAKELHEETVRKLLALHMYDCARANKAMSAWGVEARVPFLDKKFLDVAMRINPQDKMCGNG--KMEKHILRECFEA-- 246 (324)
T ss_dssp CCSHHHHHHHHHHHHHHGGGTHHHHHHHHHHTTTCEEECGGGCHHHHHHHHHSCGGGTCC-----CCTTHHHHHHHGG--
T ss_pred ccchHHHhhhhhhHHHHhhhhhhHHHHHHHHhcCccccHHHhhHHHHHHHHhCCHHHhcchhh--hhhHHHHHHHHHh--
Confidence 777777777777777888888999999999999999999999999999999999999986542 2479999999999
Q ss_pred CCCCChhhhhcccCCCCCCCchhhHHHHHHHHHHhcChHHHHhcCccCCCCCCChHHHHHHHHHHhhhCCCccc
Q 010213 438 RPYLPKHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVTDKMVQNAQYIFPHNTPLTKEAYYYRMIFERFFPQVIH 511 (515)
Q Consensus 438 ~~~lP~~i~~R~K~~f~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (515)
+||++|++|+|+||+.|.+.+|...+++++.+.++++.++......+.+++.+||.+||++||+++||.-.+
T Consensus 247 --~lP~~i~~r~K~~f~~~~~~~~~~~l~~~~~~~ls~~~l~~~~~~~~~~~~~~ke~~~~r~if~~~~p~~~~ 318 (324)
T d1ct9a1 247 --YLPASVAWRQKEQFSDGVGYSWIDTLKEVAAQQVSDQQLETARFRFPYNTPTSKEAYLYREIFEELFPLPSA 318 (324)
T ss_dssp --GSCHHHHTCCCCTTCCTTCHHHHHHHHHHHHHHSCHHHHHTHHHHCCSSCCCSHHHHHHHHHHHHHCCCHHH
T ss_pred --cchhhhhcccccCCCCCcchHHHHHHHHHHHHHcCHHHHHHhHhhCCCCCCCcHHHHHHHHHHHHHCCCCcH
Confidence 999999999999999999977888899999999999999999998999999999999999999999998654
|
| >d1jgta1 c.26.2.1 (A:210-508) beta-Lactam synthetase {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: N-type ATP pyrophosphatases domain: beta-Lactam synthetase species: Streptomyces clavuligerus [TaxId: 1901]
Probab=100.00 E-value=1.6e-50 Score=397.55 Aligned_cols=279 Identities=21% Similarity=0.305 Sum_probs=220.9
Q ss_pred CCCCcHHHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCChHHHHHHH
Q 010213 202 STPYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEV 281 (515)
Q Consensus 202 ~~~~~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d~~~A~~v 281 (515)
+.+++++.++++|.+||++|+.++.++|++||||+|||+|++++++.. .++.|||+++++++|..+|+.+
T Consensus 9 ~~~ea~~~~r~~L~~AV~~rl~~~~~~gv~LSGGlDSs~iaa~~~~~~----------~~~~~~s~~~~~~~e~~~A~~v 78 (299)
T d1jgta1 9 PEGEAVAAVRAALEKAVAQRVTPGDTPLVVLSGGIDSSGVAACAHRAA----------GELDTVSMGTDTSNEFREARAV 78 (299)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCTTCCCEEECCSSHHHHHHHHHHHHHH----------SSCEEEEEECSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCCEEEEccCHHHHHHHHHHHHHhC----------CCcceeecCccchHHHHHHHHh
Confidence 345678999999999999999999999999999999999999998865 5799999999999999999999
Q ss_pred HHHhCCCceEEEeChhHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccccCCccccCCCCh
Q 010213 282 ADYLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAPNK 361 (515)
Q Consensus 282 a~~lg~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~~~~~~~~ 361 (515)
|+++|++|+++.++.+++.+.+++++++.+.+.+..+...++++++++.+ +.|++|+|||+||||+||||.+++..+..
T Consensus 79 a~~lg~~h~~~~i~~~d~~~~l~~~i~~~e~~~~~~~~~~~~~~~l~~~~-~~~~kVvLsG~GaDElfgGY~~~~~~~~~ 157 (299)
T d1jgta1 79 VDHLRTRHREITIPTTELLAQLPYAVWASESVDPDIIEYLLPLTALYRAL-DGPERRILTGYGADIPLGGMHREDRLPAL 157 (299)
T ss_dssp HHHHTCEEEEEECCHHHHHTTHHHHHHHHCCCCHHHHHHHHHHHHHHHHC-CSSCCEEECCTTTHHHHTTTCCCSCCHHH
T ss_pred hhcccccccccceehhhhhccchhhhhccccchhccccccchHHHHHhhh-hhccceeeeccChHHHhCcchHHhhhhhh
Confidence 99999999999999999999999999998887655555566777776554 57899999999999999999998776543
Q ss_pred HHHHHHHHHHHHhhcccccccccccccccCceeccCCCCHHHHHHHHcCCccccccCCCCCcchhHHHHHhhccCCCCCC
Q 010213 362 EEFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYL 441 (515)
Q Consensus 362 ~~~~~~~~~~~~~l~~~~l~r~d~~~~~~g~e~r~PflD~~lve~~~~lP~~~k~~~~~~~~~~K~lLR~a~~~~~~~~l 441 (515)
..+ +.+++..+... ..+.|+++|++|+|.|+||||++||+++++||.++|+.++. +|+|||++|++ +|
T Consensus 158 ~~~---l~~d~~~~~~l-~~~~d~~s~~~gvE~R~PFLD~~lve~~~~lp~~~k~~~~~----~K~iLR~a~~~----~l 225 (299)
T d1jgta1 158 DTV---LAHDMATFDGL-NEMSPVLSTLAGHWTTHPYWDREVLDLLVSLEAGLKRRHGR----DKWVLRAAMAD----AL 225 (299)
T ss_dssp HHH---HHHHHHHCTTC-CTTCTHHHHTTTCEEECGGGSHHHHHHHHHBCHHHHEETTE----ETHHHHHHHTT----TS
T ss_pred hhh---hHHHhhhhhhh-hhHHHHHHHhcCceeecchhhHHHHHHHHhCcHHHhcCCCC----cchhhHHHHhc----cc
Confidence 332 33333333222 23578999999999999999999999999999999998875 89999999999 99
Q ss_pred ChhhhhcccCCCCCCCchhhHHHHHHHHHH-hcChHHHHhcCccCCCCCCChHHHHHHHHHHhhhCCCcccc
Q 010213 442 PKHVLYRQKEQFSDGVGYSWIDGLKAHAEQ-HVTDKMVQNAQYIFPHNTPLTKEAYYYRMIFERFFPQVIHL 512 (515)
Q Consensus 442 P~~i~~R~K~~f~~~~~~~~~~~~~~~~~~-~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (515)
|++|+||+|+||+.|++. | +.+.+.+.+ .+.+..+.+. -...++.+||+.+|.++||+..+-
T Consensus 226 P~~i~~R~K~~f~~g~g~-~-~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~fp~~~~~ 288 (299)
T d1jgta1 226 PAETVNRPKLGVHEGSGT-T-SSFSRLLLDHGVAEDRVHEA-------KRQVVRELFDLTVGGGRHPSEVDT 288 (299)
T ss_dssp CHHHHHSCCC-----------CHHHHHHHHHCCCTTSHHHH-------HHHHHHHHHHHHTSSCCCGGGCCH
T ss_pred CHHHhcCCCCCCCCCCCc-c-HHHHHHHHHhhccHHHHHHH-------HHHHHHHHHHHHHHHHhCcchhhh
Confidence 999999999999999883 3 122233322 2333322211 135789999999999999998763
|
| >d1q15a1 c.26.2.1 (A:206-501) beta-Lactam synthetase {Pectobacterium carotovorum [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: N-type ATP pyrophosphatases domain: beta-Lactam synthetase species: Pectobacterium carotovorum [TaxId: 554]
Probab=100.00 E-value=2.9e-46 Score=366.90 Aligned_cols=271 Identities=25% Similarity=0.422 Sum_probs=206.7
Q ss_pred CCcHHHHHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCChHHHHHHHHH
Q 010213 204 PYDPLVLRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVAD 283 (515)
Q Consensus 204 ~~~~~~l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d~~~A~~va~ 283 (515)
++..+.+...+.++|++++.++.+||++||||+|||+|++++++.. .++.|||+++++++|..+|+++|+
T Consensus 12 e~~~~~id~~l~~~v~~~~~~~~~VGv~LSGGlDSslia~~~~~~~----------~~~~tfs~~~~~~~e~~~A~~va~ 81 (296)
T d1q15a1 12 EPLLALIDRYLNAPLEDLAPRFDTVGIPLSGGLDSSLVTALASRHF----------KKLNTYSIGTELSNEFEFSQQVAD 81 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCSEEEEECCSSHHHHHHHHHHTTTC----------SEEEEEEEEETTBCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCCEEEEEccCcHHHHHHHHHHHhcC----------CCCceEEeccCCCchHHHHHHHHh
Confidence 4456788889999999999999999999999999999999988753 589999999999999999999999
Q ss_pred HhCCCceEEEeChhHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccccCCccccCCC-ChH
Q 010213 284 YLGTVHHEFHFTVQDGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLYFHKAP-NKE 362 (515)
Q Consensus 284 ~lg~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~~~~~~-~~~ 362 (515)
++|++|+++.++.+++.+.+++.+++.+.+.+.......++|.+++.+++ +++|+|||+||||+||||.++.... ...
T Consensus 82 ~l~~~h~~i~~~~~~~~~~l~~~i~~~e~~~~~~~~~~~~~~~l~k~a~~-~~kV~lsG~GaDElfgGY~~~~~~~~~~~ 160 (296)
T d1q15a1 82 ALGTHHQMKILSETEVINGIIESIYYNEIFDGLSAEIQSGLFNVYRQAQG-QVSCMLTGYGSDLLFGGILKPGAQYDNPN 160 (296)
T ss_dssp HHTCEEEEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHBT-TBSEEECCTTHHHHHTTTSCTTCCCSCHH
T ss_pred hccccceEEEeeehhhhccchhhhhccccccccchhhhhhhhhhhccccc-ccceeeecCCcccccCCcccccccccchH
Confidence 99999999999999999999999988887765444456677888888764 8999999999999999998765433 333
Q ss_pred HHHHHHHHHHHhhcccccccccccccccCceeccCCCCHHHHHHHHcCCccccccCCCCCcchhHHHHHhhccCCCCCCC
Q 010213 363 EFHRETCHKIKALHQYDCLRANKSTSAWGLEARVPFLDKDFINVAMAIDPEWKMINPQEGRIEKWILRKAFDDEERPYLP 442 (515)
Q Consensus 363 ~~~~~~~~~~~~l~~~~l~r~d~~~~~~g~e~r~PflD~~lve~~~~lP~~~k~~~~~~~~~~K~lLR~a~~~~~~~~lP 442 (515)
.+..+.+.+ ......|.|+++|++|+|+|+||||++||+|+++||.++|+.++. +|++||+|+++. .+||
T Consensus 161 ~~~~~~~~~----~~~~~~r~dr~~ma~gvE~R~PFLD~~lve~~~~ip~~~k~~~~~----~K~iLR~a~~~~--~~LP 230 (296)
T d1q15a1 161 QLLAEQVYR----TRWTGEFATHGASCYGIDIRHPFWSHSLISLCHALHPDYKIFDNE----VKNILREYADSL--QLLP 230 (296)
T ss_dssp HHHHHHHHH----HHHHSTTCCHHHHHTTCEEECTTCCHHHHHHHHTBCGGGTEETTE----ESHHHHHHHHHT--SCSC
T ss_pred HHHHHhhhh----hhhhhhhhhhhhhhcceeeeehhhhhHHHHHHHhCCHHHeeCCCc----cHHHHHHHHhhC--CCCC
Confidence 332222222 223446899999999999999999999999999999999998875 899999999741 1899
Q ss_pred hhhhhcccCCCCCCCchhhHHHHHHHHHHhcChHHHHhcCccCCCCCCChHHHHHHHHHHhhhCCCcccc
Q 010213 443 KHVLYRQKEQFSDGVGYSWIDGLKAHAEQHVTDKMVQNAQYIFPHNTPLTKEAYYYRMIFERFFPQVIHL 512 (515)
Q Consensus 443 ~~i~~R~K~~f~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (515)
++|+||+|+||+.|++.. ..+.+.+.+.+.+. .+++.+. +++|++++.+..-.
T Consensus 231 ~~i~~R~K~~f~~g~~~~--~~~~~~~~~~~~~~--------------~~~~~~~-~~~~~~~~~~~~~~ 283 (296)
T d1q15a1 231 KDIVWRKKIGIHEGSSVN--QAFANVLGSTVDNY--------------QTKSRFT-YRVYQAFLRGRLSI 283 (296)
T ss_dssp HHHHCC---------CHH--HHHHHHHTSCTTCH--------------HHHHHHH-HHHHHHHHTTSSCS
T ss_pred HHHhCCCCCCCCCCcccc--hHHHHHHHHHHHHH--------------HHHHHHH-HHHHHHHHhccccc
Confidence 999999999998776421 22333444433222 2334444 45888888776543
|
| >d1ct9a2 d.153.1.1 (A:1-192) Asparagine synthetase B, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Class II glutamine amidotransferases domain: Asparagine synthetase B, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.4e-45 Score=336.09 Aligned_cols=191 Identities=44% Similarity=0.870 Sum_probs=177.4
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEECCEEEEEeeeeecCCCCCCCceeeCCCcEEEEEeeEEcCh
Q 010213 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYNH 81 (515)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nGei~n~ 81 (515)
+||+||++.++++......+..|+..|+|||||++|++..+++.+||+||++++...+.||....+++++++|||||||+
T Consensus 1 s~I~Gi~~~~~~~~~~~~~~~~m~~~l~hRGpD~~~~~~~~~~~lgh~Rlsi~~~~~~~~~~~~~~~~~~lv~NGeI~N~ 80 (192)
T d1ct9a2 1 ASIFGVFDIKTDAVELRKKALELSRLMRHRGPDWSGIYASDNAILAHERLSIVDVNAGAQPLYNQQKTHVLAVNGEIYNH 80 (192)
T ss_dssp CEEEEEESCCSCHHHHHHHHHHHHHTTGGGCBTEEEEEECSSEEEEEEECCCSCTTTCCSSEECTTSCEEEEEEEEETTH
T ss_pred CeEEEEEeCCCChHHHHHHHHHHHHHhcccCCCCCCeEEeCCEEEEEEEEEEccccCCcccccccCCceEEEecCccchh
Confidence 69999999888766556789999999999999999999999999999999999977778888888889999999999999
Q ss_pred HHHHHHh-cCCCccCCChHHHHHHHHHHHHHhhhhccccceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcC
Q 010213 82 EALRERL-TNHKFRTGSDCDVIAHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSE 160 (515)
Q Consensus 82 ~~L~~~l-~~~~~~~~~D~e~i~~~~~~~G~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe 160 (515)
.+|+++| ....+.+.||+|+++++|++||.++++.++|+|||++||..+++|+++||++|+|||||+...++.++||||
T Consensus 81 ~~l~~~l~~~~~~~s~sDtevll~~~~~~g~~~~~~l~G~fa~~i~d~~~~~l~~aRD~~G~kPLyy~~~~~g~~~fsSE 160 (192)
T d1ct9a2 81 QALRAEYGDRYQFQTGSDCEVILALYQEKGPEFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASE 160 (192)
T ss_dssp HHHHHHHTTTSCCCSCCTTHHHHHHHHHHTTTTGGGCCEEEEEEEEETTTTEEEEEECTTCCSCCEEEECTTCCEEEESS
T ss_pred HHHHHHHhcCcccCCCCcHHHHHHHhhhcchhhhhhhhhheEEEEEecCcceeEEEEccccceeEEEEEecCcEEEEEeC
Confidence 9999999 556778899999999999999999999999999999999999999999999999999998865567999999
Q ss_pred cccccccCCcceEeCCCeEEEecCCceEEeeC
Q 010213 161 LKGLNDDCEHFEAFPPGHLYSSKSGGLKRWYN 192 (515)
Q Consensus 161 ~~~l~~~~~~i~~l~pG~~~~~~~~~~~~~~~ 192 (515)
+++|...++.|++|||||++.++++++++||.
T Consensus 161 ~k~L~~~~~~i~~~~pG~~l~~~~~~i~~y~~ 192 (192)
T d1ct9a2 161 MKALVPVCRTIKEFPAGSYLWSQDGEIRSYYH 192 (192)
T ss_dssp GGGTTTTCSEEEECCTTEEEETTTCSEEECCC
T ss_pred HHHHHHhhCCeEEcCCccEEEEcCCcEEeecC
Confidence 99999999999999999999998889999984
|
| >d1jgta2 d.153.1.1 (A:4-209) beta-Lactam synthetase {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Class II glutamine amidotransferases domain: beta-Lactam synthetase species: Streptomyces clavuligerus [TaxId: 1901]
Probab=100.00 E-value=8.3e-35 Score=266.75 Aligned_cols=160 Identities=22% Similarity=0.268 Sum_probs=140.9
Q ss_pred HhcccCCCCCCceEEECCEEEEEeeeeecCCCCCCCceeeCCCcEEEEEeeEEcChHHHHHHhcCCCccCCChHHHHHHH
Q 010213 26 RRLKHRGPDWSGLYQHGDFYLAHQRLAIIDPASGDQPLYNEDKKIVVTVNGEIYNHEALRERLTNHKFRTGSDCDVIAHL 105 (515)
Q Consensus 26 ~~l~~RGpd~~g~~~~~~~~l~h~rl~~~~~~~~~qP~~~~~~~~~~~~nGei~n~~~L~~~l~~~~~~~~~D~e~i~~~ 105 (515)
....||+||..+.+...++.++|+|+.+.+. .+.||+... ..++||||||||+.||+++| ++.+.+.||+|+|+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~h~~~~~~~~-~~~qp~~~~--~~~~v~NGeIyN~~eL~~~l-g~~~~s~sDtEvil~l 102 (206)
T d1jgta2 27 TRGSHTDIDTPQGERSLAATLVHAPSVAPDR-AVARSLTGA--PTTAVLAGEIYNRDELLSVL-PAGPAPEGDAELVLRL 102 (206)
T ss_dssp SCSEEEECCCTTGGGSCEEEEEECTTSCGGG-GEEEECSSS--SEEEEEEEEESCHHHHHHTS-CSSCCCSSHHHHHHHH
T ss_pred hhhhccCCCCCCcccccceeecccccccCCc-ccCcccCCC--CEEEEEEEEecCHHHHHHHh-CCCCCCCCchHHHHHH
Confidence 3467999999888877788999999887764 368999764 47999999999999999998 6778899999999999
Q ss_pred HHHHHHhhhhccccceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcCccccccc----------------CC
Q 010213 106 YEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD----------------CE 169 (515)
Q Consensus 106 ~~~~G~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~----------------~~ 169 (515)
|++||.+++++|+|+|+|++||. ++++++||++|.|||||+.. ++.++||||+++|+.. ++
T Consensus 103 ~~~~G~~~l~~l~G~Fa~vi~d~--~~l~laRD~~G~KPLyy~~~-~~~~~fASe~kaLl~~~~~~~~~~~~~~~~T~~k 179 (206)
T d1jgta2 103 LERYDLHAFRLVNGRFATVVRTG--DRVLLATDHAGSVPLYTCVA-PGEVRASTEAKALAAHRDPKGFPLADARRVAGLT 179 (206)
T ss_dssp HHHHGGGGGGTCCEEEEEEEEET--TEEEEEECTTCCSCCEEEEE-TTEEEEESCHHHHHTC--CCCCCCTTSEECSSCS
T ss_pred hhhhCHHHHHHHHhhhheeeeec--ceEEEEEecccceeEEEEEc-CCceEechhhHHHHhCCchhhhhhhcccCcchhh
Confidence 99999999999999999999996 78999999999999999985 7889999999999753 68
Q ss_pred cceEeCCCeEEEecC--C--ceEEeeC
Q 010213 170 HFEAFPPGHLYSSKS--G--GLKRWYN 192 (515)
Q Consensus 170 ~i~~l~pG~~~~~~~--~--~~~~~~~ 192 (515)
+|++||||+++.++. + +.++||+
T Consensus 180 gI~~lppG~~l~~~~~~~~~~~~rYWS 206 (206)
T d1jgta2 180 GVYQVPAGAVMDIDLGSGTAVTHRTWT 206 (206)
T ss_dssp SCEECCTTEEEEEETTTTEEEEEECCC
T ss_pred CeeEECCCcEEEEECCCCcEEEeecCC
Confidence 999999999998853 3 2567884
|
| >d1gph12 d.153.1.1 (1:1-234) Glutamine PRPP amidotransferase, N-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Class II glutamine amidotransferases domain: Glutamine PRPP amidotransferase, N-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=6.6e-33 Score=263.04 Aligned_cols=179 Identities=26% Similarity=0.446 Sum_probs=153.9
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEEC---------------------------CEEEEEeeeeec
Q 010213 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG---------------------------DFYLAHQRLAII 54 (515)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~---------------------------~~~l~h~rl~~~ 54 (515)
|||+|+++.+. ....+..|+..|+|||||++|++..+ .+++||+|+++.
T Consensus 1 CGI~G~~~~~~----~~~~~~~~l~~lqhRG~Ds~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~g~~~igh~r~~t~ 76 (234)
T d1gph12 1 CGVFGIWGHEE----APQITYYGLHSLQHRGQEGAGIVATDGEKLTAHKGQGLITEVFQNGELSKVKGKGAIGHVRYATA 76 (234)
T ss_dssp CEEEEEESCTT----HHHHHHHHHHTTGGGCSSCEEEEEECSSCEEEEEESSCHHHHTCSSSTTTCCCSEEEEEECCCSS
T ss_pred CeEEEEECCcc----cHHHHHHHHHHhhcCCcccCcEEEEcCCEEEEEecCCcccccchhhhcccCCCceeeeeeccccc
Confidence 99999998643 23457789999999999999998643 579999999999
Q ss_pred CCC--CCCCceee---CCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHH--------Hhhhhcccc
Q 010213 55 DPA--SGDQPLYN---EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG--------ENFVDMLDG 119 (515)
Q Consensus 55 ~~~--~~~qP~~~---~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~G--------~~~~~~l~G 119 (515)
+.. .+.||+.. .++.++++|||+|||+.+|+++| .|+.|.+++|+|+++.+++.++ .+++++++|
T Consensus 77 g~~~~~~~~p~~~~~~~~~~~~lvhNG~I~N~~eL~~~l~~~g~~f~~~td~e~~~~~~~~~~~~~~~~ai~~~~~~l~G 156 (234)
T d1gph12 77 GGGGYENVQPLLFRSQNNGSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVLAHLIKRSGHFTLKDQIKNSLSMLKG 156 (234)
T ss_dssp SCBCGGGSSCEEEBCTTTCCEEEEEEEEETTHHHHHHHHHHTTCCBSSCCHHHHHHHHHHTCCCSSHHHHHHHHHTTCCE
T ss_pred CCchhccccccceeccccceEEEEecccccCHHHHHHHHHHcCCeeeeecchhHHHHHHHHHhhhhHHHHHHHHHHhcCC
Confidence 853 46788743 35789999999999999999999 7899999999999999998765 478999999
Q ss_pred ceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcCccccccc-CCcceEeCCCeEEEecCCce
Q 010213 120 MFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKSGGL 187 (515)
Q Consensus 120 ~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~~~~ 187 (515)
+||+++++. +.++++||++|.|||||+.. ++.++||||.++|... ++.|++|+||+++.++..+.
T Consensus 157 ~~a~~i~~~--~~~~~~rD~~G~~PL~~g~~-~~~~~~aSE~~al~~~~~~~i~el~pGeii~i~~~g~ 222 (234)
T d1gph12 157 AYAFLIMTE--TEMIVALDPNGLRPLSIGMM-GDAYVVASETCAFDVVGATYLREVEPGEMLIINDEGM 222 (234)
T ss_dssp EEEEEEECS--SCEEEEECTTCCSCCEEEEE-TTEEEEESSTHHHHHHTCEEEEECCTTEEEEEETTEE
T ss_pred ceEEEEeec--CceeEEEcCCCCcCEEEEec-CCEEEEEECHHHHhhcCCcEEEEcCCCEEEEEeCCCC
Confidence 999999987 78999999999999999986 7789999999999753 56688999999998875543
|
| >d1q15a2 d.153.1.1 (A:2-205) beta-Lactam synthetase {Pectobacterium carotovorum [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Class II glutamine amidotransferases domain: beta-Lactam synthetase species: Pectobacterium carotovorum [TaxId: 554]
Probab=99.97 E-value=7.2e-33 Score=251.83 Aligned_cols=154 Identities=16% Similarity=0.181 Sum_probs=129.6
Q ss_pred hcccCCCCCCceEEECCEEEEEeeeeecCCC-CCCCceee-CCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHH
Q 010213 27 RLKHRGPDWSGLYQHGDFYLAHQRLAIIDPA-SGDQPLYN-EDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVI 102 (515)
Q Consensus 27 ~l~~RGpd~~g~~~~~~~~l~h~rl~~~~~~-~~~qP~~~-~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i 102 (515)
.+.|||||..+......+..+|.||++.+.. ..+||+.. ..+++++++||||||+.+||++| .++.|.+.||||+|
T Consensus 5 c~~~rgpd~~~~~~~~~~~~~~~rLsi~~l~~~~n~~~~~~~~~ry~~~~nGEIYN~~~lr~~l~~~~~~~~~~sDtEvl 84 (204)
T d1q15a2 5 CVVYKGSDTDINNIQRDFDGKGEALSNGYLFIEQNGHYQKCEMERGTAYLIGSLYNRTFLIGLAGVWEGEAYLANDAELL 84 (204)
T ss_dssp EEEETCCHHHHHHHHTTSCEEEEEETTEEEEEETTCCEEEEECSSSEEEEEECCSCHHHHHHHHTTTCGGGGGCCHHHHH
T ss_pred eEEEeCCCccchhhhhhhcchhhhhcchhhhhcccCCCCcccCCcEEEEEEEEEcCHHHHHHHHHHcCCCccCCChHHHH
Confidence 4689999987766666677889999998753 47899875 57889999999999999999999 46778999999999
Q ss_pred HHHHHHHHHhhhhccccceEEEEEECCCCEEEEEecCCCcceeEEEEecCcEEEEEcCcccccc----------------
Q 010213 103 AHLYEEYGENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGLDGSIWISSELKGLND---------------- 166 (515)
Q Consensus 103 ~~~~~~~G~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~---------------- 166 (515)
+++|++||.+++++|+|||||++||+ +++++++||++|+|||||+.. ++.++|||+ +++..
T Consensus 85 l~~~~~~G~~~l~~l~G~Faf~i~~~-~~~l~l~RD~~G~KPLyY~~~-~~~~ifSS~-k~i~~~~~~~~~~~~~~~~~~ 161 (204)
T d1q15a2 85 ALLFTRLGANALALAEGDFCFFIDEP-NGELTVITESRGFSPVHVVQG-KKAWMTNSL-KLVTAAEGEGALWFEEEALVC 161 (204)
T ss_dssp HHHHHHHCGGGGGGCCSSEEEEEECT-TSCEEEEECSSSSSCCEEEES-SSEEEESCH-HHHHHHHCTTSSCBCCHHHHT
T ss_pred HHHHHHHHHHHHHhhCCceEEEEecC-CceEEEEECCCCccceEEEec-CCEEEEEec-hhhhhhccCCCcCcChhHhhH
Confidence 99999999999999999999999775 478999999999999999874 667777665 33321
Q ss_pred ----------cCCcceEeCCCeEEEec
Q 010213 167 ----------DCEHFEAFPPGHLYSSK 183 (515)
Q Consensus 167 ----------~~~~i~~l~pG~~~~~~ 183 (515)
.+++|++|+||+++.++
T Consensus 162 ~~~~~~~~~T~fk~I~kl~PG~~~~~~ 188 (204)
T d1q15a2 162 QSLMRADTYTPVKNAQRLKPGAVHVLT 188 (204)
T ss_dssp TCSCCCTTCCSBTTEEECCSSEEEEEE
T ss_pred hheecCCCCcccCCeEEECCCcEEEEE
Confidence 15789999999986654
|
| >d1xffa_ d.153.1.1 (A:) Glucosamine 6-phosphate synthase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Class II glutamine amidotransferases domain: Glucosamine 6-phosphate synthase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=4.1e-31 Score=251.04 Aligned_cols=178 Identities=31% Similarity=0.410 Sum_probs=150.3
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEEC----------------------------CEEEEEeeeee
Q 010213 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG----------------------------DFYLAHQRLAI 53 (515)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~----------------------------~~~l~h~rl~~ 53 (515)
|||+|+++.+.. .+.+..|+..|+|||||++|++..+ .+++||+|++|
T Consensus 1 CGI~G~~~~~~~----~~~l~~~l~~lqhRG~Ds~Gi~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~g~~~igH~R~aT 76 (238)
T d1xffa_ 1 CGIVGAIAQRDV----AEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWAT 76 (238)
T ss_dssp CEEEEEECSSCC----HHHHHHHHHHHGGGCCSEEEEEEECTTCCEEEEEEESCHHHHHHHHHHSCCCCSEEEEEEECCS
T ss_pred CEEEEEECChhH----HHHHHHHHHHhcccCccccCEEEEcCCCCEEEEeeccccccccccccccccCCcEEEeeecccc
Confidence 999999986532 3457789999999999999998643 47899999999
Q ss_pred cCCC--CCCCceeeCCCcEEEEEeeEEcChHHHHHHh--cCCCccCCChHHHHHHHHHHHH----------Hhhhhcccc
Q 010213 54 IDPA--SGDQPLYNEDKKIVVTVNGEIYNHEALRERL--TNHKFRTGSDCDVIAHLYEEYG----------ENFVDMLDG 119 (515)
Q Consensus 54 ~~~~--~~~qP~~~~~~~~~~~~nGei~n~~~L~~~l--~~~~~~~~~D~e~i~~~~~~~G----------~~~~~~l~G 119 (515)
.+.. .++||+.. ++++++|||+|||+.+|+++| .|+.|.+.||||++++++.... .++++.++|
T Consensus 77 ~g~~~~~n~~p~~~--~~~~~vhNG~I~N~~~L~~~L~~~g~~f~s~sDtEvi~~l~~~~~~~~~~~~e~i~~~~~~l~G 154 (238)
T d1xffa_ 77 HGEPSEVNAHPHVS--EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRG 154 (238)
T ss_dssp SSCSSTTTSSCEEE--TTEEEEEEEEETTHHHHHHHHHHTTCCCCSCCSHHHHHHHHHHHHHTSSCHHHHHHHHGGGCCE
T ss_pred cccccccCCccccC--CcEEEEEcCcccCHHHHHHHHHHcCCCcccCCcchhhhhhhhHhhhcCCCHHHHHHHHHHHccC
Confidence 9864 46688765 569999999999999999999 7899999999999999987643 468999999
Q ss_pred ceEEEEEECCC-CEEEEEecCCCcceeEEEEecCcEEEEEcCcccccccCCcceEeCCCeEEEecCCceEE
Q 010213 120 MFSFVLLDTRD-NSFIVARDAIGITSLYIGWGLDGSIWISSELKGLNDDCEHFEAFPPGHLYSSKSGGLKR 189 (515)
Q Consensus 120 ~fa~v~~d~~~-~~l~~~rD~~G~~pLyy~~~~~~~~~faSe~~~l~~~~~~i~~l~pG~~~~~~~~~~~~ 189 (515)
+||+++.+... ..++.+|+ .+||||+.. ++.++||||.++|....+.+..|+||+++.+.++++..
T Consensus 155 ~~a~~i~~~~~~~~i~~~~~---~~PL~~g~~-~~~~~~aSE~~al~~~~~~~~~l~~gei~~i~~~~i~i 221 (238)
T d1xffa_ 155 AYGTVIMDSRHPDTLLAARS---GSPLVIGLG-MGENFIASDQLALLPVTRRFIFLEEGDIAEITRRSVNI 221 (238)
T ss_dssp EEEEEEEETTCTTCEEEEEE---BSCCEEEEC-SSCEEEESSGGGTTTTCSEEEECCTTCEEEECSSCEEE
T ss_pred chhhhhhhccCCCEEEEECC---CccCEEEEC-CceEEEEcCHHHHHHhhceEEEeCCCeEEEEeCCcEEE
Confidence 99999999754 45666665 599999985 67899999999999988889999999999988776644
|
| >d1ecfa2 d.153.1.1 (A:1-249) Glutamine PRPP amidotransferase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Class II glutamine amidotransferases domain: Glutamine PRPP amidotransferase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=7.3e-30 Score=243.52 Aligned_cols=178 Identities=22% Similarity=0.387 Sum_probs=146.1
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhcccCCCCCCceEEEC----------------------------CEEEEEeeeee
Q 010213 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGPDWSGLYQHG----------------------------DFYLAHQRLAI 53 (515)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGpd~~g~~~~~----------------------------~~~l~h~rl~~ 53 (515)
|||+|+++.+.. ...+..|+..|+|||+|++|++..+ .+++||+||+|
T Consensus 1 CGI~G~~~~~~~----~~~l~~gL~~LqhRG~DsaGIa~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~g~~gIGHtR~aT 76 (249)
T d1ecfa2 1 CGIVGIAGVMPV----NQSIYDALTVLQHRGQDAAGIITIDANNCFRLRKANGLVSDVFEARHMQRLQGNMGIGHVRYPT 76 (249)
T ss_dssp CEEEEEECSSCC----HHHHHHHHHHTGGGCCSEEEEEEECTTSCEEEEEEESCHHHHCCHHHHHHCCSSEEEEEEECCB
T ss_pred CEEEEEEcChhh----HHHHHHHHHHHhccCcCeeEEEEEECCCEEEEEEcCCccchhhhhhhhccCCCceeeeEeeccc
Confidence 999999986432 3456789999999999999998643 37899999999
Q ss_pred cCCC--CCCCcee-eCCCcEEEEEeeEEcChHHHHHHh---cCCCccCCChHHHHHHHHHHHH-----------------
Q 010213 54 IDPA--SGDQPLY-NEDKKIVVTVNGEIYNHEALRERL---TNHKFRTGSDCDVIAHLYEEYG----------------- 110 (515)
Q Consensus 54 ~~~~--~~~qP~~-~~~~~~~~~~nGei~n~~~L~~~l---~~~~~~~~~D~e~i~~~~~~~G----------------- 110 (515)
.|.. .++||+. +.++++++||||+|+|+.+|++.+ .++.|.+.+|+|++++++...-
T Consensus 77 ~G~~~~~nahP~~~~~~~~~~lvhNG~I~Ny~eL~~~~l~~~g~~f~s~tDtEvi~~li~~~~~~~~~~~~~~~~~~~~i 156 (249)
T d1ecfa2 77 AGSSSASEAQPFYVNSPYGITLAHNGNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFASELDNFRHYPLEADNIFAAI 156 (249)
T ss_dssp TTBCTTSCCSCEEECSSSCEEEEEEEEETTHHHHHHHHHHHHCCCCCSSCHHHHHHHHHHHHHTTCCSSSCCHHHHHHHH
T ss_pred CCCCchhcccccccCCCCcEEEEeeeeeccHHHHHHHHHHhcCccccccchHHHHHHHHHHHHhccccccchhhhHHHHH
Confidence 9843 4789964 456789999999999999996654 6899999999999999886532
Q ss_pred HhhhhccccceEEEEEECCCCEEEEEecCCCcceeEEEEec----CcEEEEEcCccccccc-CCcceEeCCCeEEEecC
Q 010213 111 ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLYIGWGL----DGSIWISSELKGLNDD-CEHFEAFPPGHLYSSKS 184 (515)
Q Consensus 111 ~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLyy~~~~----~~~~~faSe~~~l~~~-~~~i~~l~pG~~~~~~~ 184 (515)
..+++.++|.|++++.... ..++++||+.|+|||||+... ++.++||||..+|... ++.|+.|.||+++.++.
T Consensus 157 ~~~~~~l~Gs~~~~~~~~~-~~~~~~rD~~GirPL~~G~~~~~~~~~~~~vaSE~~Al~~~~~~~i~~l~pGe~v~i~~ 234 (249)
T d1ecfa2 157 AATNRLIRGAYACVAMIIG-HGMVAFRDPNGIRPLVLGKRDIDENRTEYMVASESVALDTLGFDFLRDVAPGEAIYITE 234 (249)
T ss_dssp HHHHHHCCEEEEEEEEETT-TEEEEEECTTCCSCCEEEEEECSSSCEEEEEESSTHHHHHHTCEEEEECCTTEEEEEET
T ss_pred HHHHHhcCCCceEEEEecC-CCceEEEecCCCccceeccccccCCCcEEEEEeCHHHHhhcCceEEEEcCCCeEEEEEC
Confidence 3467889999999887653 689999999999999998742 2568999999999653 45578899999988754
|
| >d1te5a_ d.153.1.1 (A:) Hypothetical protein YafJ (PA1307) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Class II glutamine amidotransferases domain: Hypothetical protein YafJ (PA1307) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.46 E-value=2.2e-14 Score=136.06 Aligned_cols=171 Identities=16% Similarity=0.148 Sum_probs=116.5
Q ss_pred eEEEEEEcCCCCchHHHHHHHHHHHhcccCCC------CCCceEEEC-----------------------------CEEE
Q 010213 2 CGILAVLGCSDDSQAKRVRVLELSRRLKHRGP------DWSGLYQHG-----------------------------DFYL 46 (515)
Q Consensus 2 cGI~G~~~~~~~~~~~~~~~~~~~~~l~~RGp------d~~g~~~~~-----------------------------~~~l 46 (515)
|||+|+.+..... +...+..++|||. |+.|+...+ .++|
T Consensus 1 C~l~g~~s~~p~~------i~~~l~~l~~r~~~~~~h~DGwGia~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~s~~~i 74 (253)
T d1te5a_ 1 CELLGMSANVPTD------IVFSFTGLMQRGGGTGPHRDGWGIAFYEGRGVRLFQDPLASVDSEVARLVQRFPIKSETVI 74 (253)
T ss_dssp CCEEEEEEEEEEE------CEEEECCCCCCSSSSSSSBCEEEEEEEETTEEEEEEECSBSSCCHHHHHHHHSCCEEEEEE
T ss_pred CEEEEEEcCCCcc------HHHHHHHHHhcCCcCCCCCCeEEEEEEeCCeEEEEEcCceeccCHHHHHHhhCcCCCcEEE
Confidence 9999998643211 1223567889984 778876543 4789
Q ss_pred EEeeeeecCCC--CCCCceee--CCCcEEEEEeeEEcChHHHHHHhcCCCccCCChHHHHHHHHHHHH------------
Q 010213 47 AHQRLAIIDPA--SGDQPLYN--EDKKIVVTVNGEIYNHEALRERLTNHKFRTGSDCDVIAHLYEEYG------------ 110 (515)
Q Consensus 47 ~h~rl~~~~~~--~~~qP~~~--~~~~~~~~~nGei~n~~~L~~~l~~~~~~~~~D~e~i~~~~~~~G------------ 110 (515)
||+|+++.|.. .++|||.. .+++++++|||.|.|+.+++..+ ...+.+|+|++..++...-
T Consensus 75 gHvR~AT~G~~~~~N~hPf~~~~~~~~~~f~HNG~i~n~~~l~~~~---~~~g~tDse~~~~~i~~~l~~~~~~~~~~~~ 151 (253)
T d1te5a_ 75 GHIRQANVGKVGLSNTHPFIRELGGRYWTFAHNGQLADFQPKPGFY---RPVGETDSEAAFCDLLNRVRRAFPEPVPVEV 151 (253)
T ss_dssp EEEEECCCSCCSGGGCSCEEEEETTEEEEEEEESCBSSCCCCCCSS---CCSSCCHHHHHHHHHHHHHHHHCSSCCCHHH
T ss_pred EEeeeccCCCCccccCCceEEEcCCCCEEEEEeeeEechhhhhhhh---cccCCCccchhHHHHHHHHHhccccCCchHH
Confidence 99999999854 47899964 45779999999999999876554 3467899999888776431
Q ss_pred -H----hhhhcc--ccceEEEEEECCCCEEEE--------EecCCCcceeEEEEecCc-------------EEEEEcCcc
Q 010213 111 -E----NFVDML--DGMFSFVLLDTRDNSFIV--------ARDAIGITSLYIGWGLDG-------------SIWISSELK 162 (515)
Q Consensus 111 -~----~~~~~l--~G~fa~v~~d~~~~~l~~--------~rD~~G~~pLyy~~~~~~-------------~~~faSe~~ 162 (515)
. ++.+.+ .+.++++++|. ..+++ .+++.+..|+++... +. .+++|||
T Consensus 152 ~~~~~~~~~~~~~~~~~~n~~~~dg--~~l~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ivASe-- 226 (253)
T d1te5a_ 152 LLPVLISACDEYRKKGVFNALISDG--DWLFTFCSSKLAYITRRAPFGPARLKDA-DLTVDFHAETTPDDVVTVIATE-- 226 (253)
T ss_dssp HHHHHHHHHHHHHTTBCCEEEEESS--SCEEEECSSCEEEEEEESSCCCEEEECS-SEEEEECCCSSTTCEEEEEESS--
T ss_pred HHHHHHHHHHhhccceEEEEEccCC--CEEEEEecCCceEEEEccCCCceeeccC-CCceEEeccccCCCCEEEEEec--
Confidence 1 122222 46677777776 44554 466677777776532 22 3455665
Q ss_pred cccccCCcceEeCCCeEEEecCCce
Q 010213 163 GLNDDCEHFEAFPPGHLYSSKSGGL 187 (515)
Q Consensus 163 ~l~~~~~~i~~l~pG~~~~~~~~~~ 187 (515)
+|.. -..+..|+||+++.+.+|++
T Consensus 227 pl~~-~~~w~~i~~Ge~vv~~~Gei 250 (253)
T d1te5a_ 227 PLTD-NENWTLQQSGEWVLWWGGEV 250 (253)
T ss_dssp CSSS-SSSCEEECTTCEEEEETTEE
T ss_pred cccC-CCCEEEeCCCeEEEEECCEE
Confidence 2322 24689999999998888775
|
| >d1ofda3 d.153.1.1 (A:1-430) Alpha subunit of glutamate synthase, N-terminal domain {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Class II glutamine amidotransferases domain: Alpha subunit of glutamate synthase, N-terminal domain species: Synechocystis sp. [TaxId: 1143]
Probab=99.36 E-value=8.9e-12 Score=123.53 Aligned_cols=133 Identities=21% Similarity=0.193 Sum_probs=96.6
Q ss_pred CEEEEEeeeeecCCC--CCCCceeeCCCcEEEEEeeEEcChHHHH--------------------HHhcCCCccCCChHH
Q 010213 43 DFYLAHQRLAIIDPA--SGDQPLYNEDKKIVVTVNGEIYNHEALR--------------------ERLTNHKFRTGSDCD 100 (515)
Q Consensus 43 ~~~l~h~rl~~~~~~--~~~qP~~~~~~~~~~~~nGei~n~~~L~--------------------~~l~~~~~~~~~D~e 100 (515)
.+++.|+|.+|.+.. ..+|||. .++|||||.-..--+ +.+....-...||++
T Consensus 199 ~~al~H~RFSTNT~PsW~lAQPfR------~laHNGEINTi~GN~nwm~are~~l~s~~~~~~~~~~l~pi~~~~~SDSa 272 (430)
T d1ofda3 199 NFAVYHRRFSTNTMPKWPLAQPMR------LLGHNGEINTLLGNINWMAAREKELEVSGWTKAELEALTPIVNQANSDSY 272 (430)
T ss_dssp SEEEEEECCCSSSCCCGGGSSCCS------SEEEEECCTTHHHHHHHHHHHGGGCCCTTCCHHHHHHHCCSCCTTSCHHH
T ss_pred EEEEEEEEEecCCCCcchhcCccc------cccCCcccccccchHHHHHHhhhhcccccccccchhhccCcCCCCccchh
Confidence 589999999998865 4789996 599999997432211 112223334679998
Q ss_pred HHHHHHH---HHHH----------------------------------hhhhccccceEEEEEECCCCEEEEEecCCCcc
Q 010213 101 VIAHLYE---EYGE----------------------------------NFVDMLDGMFSFVLLDTRDNSFIVARDAIGIT 143 (515)
Q Consensus 101 ~i~~~~~---~~G~----------------------------------~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~ 143 (515)
.+-..++ ..|. .+++..+|.+++++.|. +.+.++.||.|.|
T Consensus 273 ~lDn~lElL~~~g~~l~~a~~mliPeaw~~~~~m~~~p~~r~fyey~~~~mEpWDGPA~i~ftdG--~~iga~lDRnGLR 350 (430)
T d1ofda3 273 NLDSALELLVRTGRSPLEAAMILVPEAYKNQPALKDYPEISDFHDYYSGLQEPWDGPALLVFSDG--KIVGAGLDRNGLR 350 (430)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHSCCCCTTCGGGTTCHHHHHHHHHHTTTCCCCCSSEEEEEECS--SEEEEEECTTCCS
T ss_pred hHHHHHHHHHhccCccHHHHHhhhhhhhccccccCchHHHHHHHHHHHhhhhcccCCEEEEEecC--CEEEEEecCCCCC
Confidence 6544433 3231 13345579999999998 8999999999999
Q ss_pred eeEEEEecCcEEEEEcCcccccccCCcce---EeCCCeEEEec
Q 010213 144 SLYIGWGLDGSIWISSELKGLNDDCEHFE---AFPPGHLYSSK 183 (515)
Q Consensus 144 pLyy~~~~~~~~~faSe~~~l~~~~~~i~---~l~pG~~~~~~ 183 (515)
|+-|..+.|+.+++|||...+.-....|. +|.||+++-++
T Consensus 351 P~Ry~~t~d~~~i~aSE~Gv~~~~~~~v~~kgrl~PG~m~~vD 393 (430)
T d1ofda3 351 PARYCITKDDYIVLGSEAGVVDLPEVDIVEKGRLAPGQMIAVD 393 (430)
T ss_dssp CCEEEEETTCCEEEESSTTCSCCCGGGEEEEEECCTTCEEEEE
T ss_pred cceEEEecCCEEEEEeccccccCChhheeeccCCCCCcEEEEE
Confidence 99777777788999999888754444443 49999997765
|
| >d1ea0a3 d.153.1.1 (A:1-422) Alpha subunit of glutamate synthase, N-terminal domain {Azospirillum brasilense [TaxId: 192]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Class II glutamine amidotransferases domain: Alpha subunit of glutamate synthase, N-terminal domain species: Azospirillum brasilense [TaxId: 192]
Probab=99.28 E-value=4.5e-11 Score=118.49 Aligned_cols=133 Identities=22% Similarity=0.230 Sum_probs=98.0
Q ss_pred CEEEEEeeeeecCCC--CCCCceeeCCCcEEEEEeeEEcChHHHHH-------------------HhcCCCccCCChHHH
Q 010213 43 DFYLAHQRLAIIDPA--SGDQPLYNEDKKIVVTVNGEIYNHEALRE-------------------RLTNHKFRTGSDCDV 101 (515)
Q Consensus 43 ~~~l~h~rl~~~~~~--~~~qP~~~~~~~~~~~~nGei~n~~~L~~-------------------~l~~~~~~~~~D~e~ 101 (515)
.+++.|+|.+|.+.. .-+|||. .++|||||.-..-.++ ++........||++.
T Consensus 203 ~~al~H~RFSTNT~PsW~lAQPFR------~laHNGEINTi~gN~nwm~are~~~~s~~~~~~~~~l~pii~~~~SDSa~ 276 (422)
T d1ea0a3 203 DFAIYHQRYSTNTFPTWPLAQPFR------MLAHNGEINTVKGNVNWMKAHETRMEHPAFGTHMQDLKPVIGVGLSDSGS 276 (422)
T ss_dssp SEEEEEECCCSCSCCCSTTSSCCS------SEEEEECCTTHHHHHHHHHHHGGGCCCSTTGGGHHHHCCSSCTTCCHHHH
T ss_pred EEEEEEeeeeccCCCchhhcCcee------eecCCCchhhhhhhHHHHHHhhhhccccccccchhhhhcccCCCCccchh
Confidence 489999999998854 4789995 6999999975442221 222233346799987
Q ss_pred HHHHHH---HHH--------------------------------HhhhhccccceEEEEEECCCCEEEEEecCCCcceeE
Q 010213 102 IAHLYE---EYG--------------------------------ENFVDMLDGMFSFVLLDTRDNSFIVARDAIGITSLY 146 (515)
Q Consensus 102 i~~~~~---~~G--------------------------------~~~~~~l~G~fa~v~~d~~~~~l~~~rD~~G~~pLy 146 (515)
+-.+++ +.| ..+++..+|..++++.|. +.+.+..||.|.||+-
T Consensus 277 lDn~lElL~~~G~sl~~a~~mliP~aw~~~~~m~~~~r~fyey~~~~~epwdGPA~i~ftdg--~~~ga~lDRnGLRP~r 354 (422)
T d1ea0a3 277 LDTVFEVMVRAGRTAPMVKMMLVPQALTSSQTTPDNHKALIQYCNSVMEPWDGPAALAMTDG--RWVVGGMDRNGLRPMR 354 (422)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHSCCCCC---CCCHHHHHHHHHHHHHCCCCCSSEEEEECSS--SEEEEECCTTCCSCCE
T ss_pred HHHHHHHHHHcCCcHHHHHHhhchhhhhccccccHHHHHHHHHHHhhccccCCCeEEEEecC--CEEEEEecCCCCCcce
Confidence 555443 333 124566799999999998 8999999999999997
Q ss_pred EEEecCcEEEEEcCcccccccCCcce---EeCCCeEEEec
Q 010213 147 IGWGLDGSIWISSELKGLNDDCEHFE---AFPPGHLYSSK 183 (515)
Q Consensus 147 y~~~~~~~~~faSe~~~l~~~~~~i~---~l~pG~~~~~~ 183 (515)
|..+.|+.+++|||...+.-....|. +|.||+++-++
T Consensus 355 y~~t~d~~~i~aSE~Gv~~~~~~~v~~kgrl~PG~~~~vd 394 (422)
T d1ea0a3 355 YTITTDGLIIGGSETGMVKIDETQVIEKGRLGPGEMIAVD 394 (422)
T ss_dssp EEEETTSEEEECSSSTTSCCCGGGEEEEEECCTTCEEEEE
T ss_pred EEEecCCEEEEEeccccccCCHHHeeeccCCCCCceEEEE
Confidence 77776788899999887753333332 59999997665
|
| >d1xnga1 c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: N-type ATP pyrophosphatases domain: NH3-dependent NAD+-synthetase species: Helicobacter pylori [TaxId: 210]
Probab=98.56 E-value=6e-08 Score=90.68 Aligned_cols=78 Identities=18% Similarity=0.143 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHhhc--cccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCC--ChHHHHHHHHH
Q 010213 208 LVLRQAFENAVIKRLM--TDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS--PDLKYAKEVAD 283 (515)
Q Consensus 208 ~~l~~~l~~aV~~rl~--~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~--~d~~~A~~va~ 283 (515)
+++.+.+.+.++..+. ....|.+.||||+|||++|+++.+.+. .++.++++....+ .+...|+.+|+
T Consensus 4 ~~~~~~l~~~l~~~~~~~G~k~vvvglSGGVDSsv~A~L~~~a~~---------~~v~~v~mp~~~~~~~~~~~A~~la~ 74 (255)
T d1xnga1 4 QKLIVYLCDFLEKEVQKRGFKKVVYGLSGGLDSAVVGVLCQKVFK---------ENAHALLMPSSVSMPENKTDALNLCE 74 (255)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEECCSSHHHHHHHHHHHHHHG---------GGEEEEECCCSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHhh---------hhcchhcCcchhcchhhHHHHHHHHH
Confidence 3444444444544442 335788999999999999999998763 4688888765544 35678999999
Q ss_pred HhCCCceEEEe
Q 010213 284 YLGTVHHEFHF 294 (515)
Q Consensus 284 ~lg~~~~~~~~ 294 (515)
.+|++|+++.+
T Consensus 75 ~lgi~~~~i~~ 85 (255)
T d1xnga1 75 KFSIPYTEYSI 85 (255)
T ss_dssp HHTCCEEECCC
T ss_pred Hhhhcchhhhh
Confidence 99999877654
|
| >d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI, C-terminal domain {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: ThiI-like domain: Thiamine biosynthesis protein ThiI, C-terminal domain species: Bacillus anthracis [TaxId: 1392]
Probab=98.53 E-value=6e-08 Score=88.40 Aligned_cols=116 Identities=15% Similarity=0.131 Sum_probs=69.6
Q ss_pred cccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC--C-CChHHHHHHHHHHhCCCceEEEeChhHHH
Q 010213 224 TDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--G-SPDLKYAKEVADYLGTVHHEFHFTVQDGI 300 (515)
Q Consensus 224 ~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~--~-~~d~~~A~~va~~lg~~~~~~~~~~~~~~ 300 (515)
+.+++.++||||+||++++.++.+.. .++.++++... . ..+...++.+++.++..++.+........
T Consensus 3 ~~gKvvv~~SGG~DS~vla~ll~k~g----------~~v~av~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 72 (218)
T d2c5sa1 3 VGGKVMVLLSGGIDSPVAAYLTMKRG----------VSVEAVHFHSPPFTSERAKQKVIDLAQELTKYCKRVTLHLVPFT 72 (218)
T ss_dssp TTEEEEEECCSSSHHHHHHHHHHHBT----------EEEEEEEEECTTTSCHHHHHHHHHHHHHHGGGSSCEEEEEEECH
T ss_pred CCCEEEEEecCcHHHHHHHHHHHHcC----------CeEEEEEEeCCCccchHHHHHHHhhhccccccccccceEEeecc
Confidence 45678999999999999999887642 57788887543 2 24667788888888776443332211111
Q ss_pred HHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccccc
Q 010213 301 DAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDEIF 349 (515)
Q Consensus 301 ~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf 349 (515)
+.........................+.+.|.+.|+++++||+..|...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~G~~~~d~~ 121 (218)
T d2c5sa1 73 EVQKTINKEIPSSYSMTVMRRMMMRITERIAEERNALAITTGESLGQVA 121 (218)
T ss_dssp HHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHTTCCEEECCCCSSSTT
T ss_pred hhhhhhhhccccchHHHHHHHHHHHHHHHHHHHhccceEEeeeecCcch
Confidence 2222222111111100111112223456778889999999999887744
|
| >d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: PP-loop ATPase domain: TilS-like protein Aq 1887 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.37 E-value=6.6e-07 Score=81.30 Aligned_cols=112 Identities=12% Similarity=0.059 Sum_probs=71.7
Q ss_pred ccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeec--CCC--ChHHHHHHHHHHhCCCceEEEeChhH
Q 010213 223 MTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL--EGS--PDLKYAKEVADYLGTVHHEFHFTVQD 298 (515)
Q Consensus 223 ~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~--~~~--~d~~~A~~va~~lg~~~~~~~~~~~~ 298 (515)
..+.+|.|++|||.||++++.++.+...... ...+.++++.. ... .|...++.+|+.+|+++....++...
T Consensus 22 ~~~~kv~Va~SGG~DS~~Ll~lL~~~~~~~~-----~~~i~~~~vdh~~r~~s~~~~~~~~~~~~~l~i~~~i~~~~~~~ 96 (216)
T d1wy5a1 22 SGERRVLIAFSGGVDSVVLTDVLLKLKNYFS-----LKEVALAHFNHMLRESAERDEEFCKEFAKERNMKIFVGKEDVRA 96 (216)
T ss_dssp SSCCEEEEECCSSHHHHHHHHHHHHSTTTTT-----CSEEEEEEEECCSSTHHHHHHHHHHHHHHHHTCCEEEEECCHHH
T ss_pred CCCCeEEEEeCCcHHHHHHHHHHHHHHHhcC-----CCcEEEEEeecccccchhhhhhHHHHHHHhhhhhhhhhccchhh
Confidence 4567899999999999999999887532110 12455555543 222 35677899999999999887765432
Q ss_pred HHHHHHHHHHhhccCCCCcccchHHHH-HHHHHHHhCCCeEEEeccCcccc
Q 010213 299 GIDAIEEVIYHVETYDVTTIRASTPMF-LMSRKIKSLGVKMVISGEGSDEI 348 (515)
Q Consensus 299 ~~~~l~~~~~~~e~~~~~~~~~~~~~~-~l~~~a~~~g~~vlltG~GgDel 348 (515)
.... ........+....| ++.+.+++.|+++++||+-.|..
T Consensus 97 ~~~~---------~~~~~~~~~R~~Ry~~l~~~a~~~~~~~ia~GH~~dD~ 138 (216)
T d1wy5a1 97 FAKE---------NRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHLNDL 138 (216)
T ss_dssp HHHH---------TTCCHHHHHHHHHHHHHHHHHHHTTCSEEECCCCHHHH
T ss_pred hccC---------CccchHHHHHHHHHHHhhhhccccccceeEeeeeccch
Confidence 1110 00000000111123 45677888999999999999875
|
| >d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: PP-loop ATPase domain: tRNA-Ile-lysidine synthetase, TilS, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.19 E-value=4.8e-06 Score=76.01 Aligned_cols=111 Identities=15% Similarity=0.113 Sum_probs=72.3
Q ss_pred HHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC--CC--ChHHHHHHHHHHhCCCceEEE
Q 010213 218 VIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GS--PDLKYAKEVADYLGTVHHEFH 293 (515)
Q Consensus 218 V~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~--~~--~d~~~A~~va~~lg~~~~~~~ 293 (515)
..+-+....+|.|++|||.||++++.++.+...+. .+..+.++++... .. .|...++..|+.+|++++...
T Consensus 6 l~~~l~~~kkvlva~SGG~DS~~Ll~ll~~~~~~~-----~~~~l~~~~vdh~~r~~s~~~~~~~~~~~~~~~i~~~i~~ 80 (227)
T d1ni5a1 6 LNRQLLTSRQILVAFSGGLDSTVLLHQLVQWRTEN-----PGVALRAIHVHHGLSANADAWVTHCENVCQQWQVPLVVER 80 (227)
T ss_dssp HHHHHTTCSEEEEECCSBHHHHHHHHHHHHHHTTS-----TTCEEEEEEECCSCCSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred hhhhcCCCCcEEEEecCcHHHHHHHHHHHHHHHhC-----CCceEEEEEeCCCCCcchhhhHHHHHHHHhhccCcceeee
Confidence 34445677899999999999999999998865322 1246777777432 22 356788999999999988776
Q ss_pred eChhHHHHHHHHHHHhhccCCCCcccc-hHHHHHHHHHHHhCCCeEEEeccCcccc
Q 010213 294 FTVQDGIDAIEEVIYHVETYDVTTIRA-STPMFLMSRKIKSLGVKMVISGEGSDEI 348 (515)
Q Consensus 294 ~~~~~~~~~l~~~~~~~e~~~~~~~~~-~~~~~~l~~~a~~~g~~vlltG~GgDel 348 (515)
+..... ...... ..........+...++.++++|+-+|..
T Consensus 81 ~~~~~~---------------~~~~e~~~~~~~~~~~~~~~~~~~~i~~gH~~dD~ 121 (227)
T d1ni5a1 81 VQLAQE---------------GLGIEAQARQARYQAFARTLLPGEVLVTAQHLDDQ 121 (227)
T ss_dssp CCCCCS---------------SSTTTTHHHHHHHHHHHHTCCTTEEEECCCCHHHH
T ss_pred cccccc---------------ccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 542110 001111 1112222334456789999999998864
|
| >d1kqpa_ c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: N-type ATP pyrophosphatases domain: NH3-dependent NAD+-synthetase species: Bacillus subtilis [TaxId: 1423]
Probab=98.16 E-value=5.9e-06 Score=77.17 Aligned_cols=137 Identities=14% Similarity=0.169 Sum_probs=78.1
Q ss_pred HHHHHHhhcc--ccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCChHHHHHHHHHHhCCCceEE
Q 010213 215 ENAVIKRLMT--DVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEF 292 (515)
Q Consensus 215 ~~aV~~rl~~--~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg~~~~~~ 292 (515)
...++.++.. -..+.+.||||+||+++++++++......... ....+.++.+......+...|+.+++.++..+. +
T Consensus 26 v~~lrdy~~ksg~~gvvvglSGGIDSAv~a~L~~~A~~~~~~~~-g~~~v~~v~mP~~~~~~~~~a~~~~~~~~~~~~-~ 103 (271)
T d1kqpa_ 26 VNFLKQYVKKTGAKGFVLGISGGQDSTLAGRLAQLAVESIREEG-GDAQFIAVRLPHGTQQDEDDAQLALKFIKPDKS-W 103 (271)
T ss_dssp HHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHTT-CCCEEEEEECCSSSCTTHHHHHHHHHHHCCSEE-E
T ss_pred HHHHHHHHHHhCCCeEEEECCCCHHHHHHHHHHHHHHHHHHHhc-CCceeeeeecCccccchhhhHHHHHHHhccccc-e
Confidence 3445554432 23567889999999999999887652110000 013566777655445667788899999998654 2
Q ss_pred EeChhHHHHHHHHHHHhh--ccCCCC---cccchHHHHHHHHHHHhCCCeEEEeccCccccccCCcc
Q 010213 293 HFTVQDGIDAIEEVIYHV--ETYDVT---TIRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (515)
Q Consensus 293 ~~~~~~~~~~l~~~~~~~--e~~~~~---~~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~ 354 (515)
.++.....+.+.+..... +..... .+...+.+..++..|.+.|.-|+-||.- +|.+.||..
T Consensus 104 ~i~I~~~~~~~~~~~~~~~~~~~~~~~~~NiqaRiR~~~Ly~~An~~g~lvlgTgNk-sE~~~Gy~T 169 (271)
T d1kqpa_ 104 KFDIKSTVSAFSDQYQQETGDQLTDFNKGNVKARTRMIAQYAIGGQEGLLVLGTDHA-AEAVTGFFT 169 (271)
T ss_dssp ECCCHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHTCEEBCCCCH-HHHTTTCSC
T ss_pred EEeehHHHHhHHHHHHHhhhccccchhccccccccccchhHHhHhhcCCccCCCcch-hhhhcchhh
Confidence 344444455444433211 111100 1112233445556677778777777765 577888864
|
| >d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: N-type ATP pyrophosphatases domain: GMP synthetase, central domain species: Escherichia coli [TaxId: 562]
Probab=98.05 E-value=5.1e-06 Score=73.30 Aligned_cols=76 Identities=18% Similarity=0.135 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhhccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC---CCChHHHHHHHHHHhC
Q 010213 210 LRQAFENAVIKRLMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE---GSPDLKYAKEVADYLG 286 (515)
Q Consensus 210 l~~~l~~aV~~rl~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~---~~~d~~~A~~va~~lg 286 (515)
+.+...+.++..+ .+..+.|.+|||+|||++|+++.+... ..+..+.+... ...+...++.++..++
T Consensus 6 ~i~~~~~~ik~~v-~~~kvvV~lSGGVDSsv~a~ll~~~~g---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 75 (197)
T d1gpma1 6 IIDDAVARIREQV-GDDKVILGLSGGVDSSVTAMLLHRAIG---------KNLTCVFVDNGLLRLNEAEQVLDMFGDHFG 75 (197)
T ss_dssp HHHHHHHHHHHHH-TTCEEEEECCSSHHHHHHHHHHHHHHG---------GGEEEEEEECSCSCTTHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHh-CCCcEEEEcCCCHHHHHHHHHHHHhcC---------ceeeeeecccccccccchHHHHHHHHHhcC
Confidence 3333334555554 346799999999999999999988652 33444443322 2346678889999999
Q ss_pred CCceEEEeC
Q 010213 287 TVHHEFHFT 295 (515)
Q Consensus 287 ~~~~~~~~~ 295 (515)
++|..+.+.
T Consensus 76 i~~~~~~~~ 84 (197)
T d1gpma1 76 LNIVHVPAE 84 (197)
T ss_dssp CCEEEEECH
T ss_pred cccccccHH
Confidence 999888764
|
| >d1wxia1 c.26.2.1 (A:2-275) NH3-dependent NAD+-synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: N-type ATP pyrophosphatases domain: NH3-dependent NAD+-synthetase species: Escherichia coli [TaxId: 562]
Probab=98.04 E-value=2.4e-06 Score=79.99 Aligned_cols=139 Identities=12% Similarity=0.053 Sum_probs=72.1
Q ss_pred HHHHHHHHHhhcc--c-cceEEeecCCcchHHHHHHHHHHhccccccccCCCcee--eEEeecCCC-ChHHHHHHHHHHh
Q 010213 212 QAFENAVIKRLMT--D-VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLH--SFCVGLEGS-PDLKYAKEVADYL 285 (515)
Q Consensus 212 ~~l~~aV~~rl~~--~-~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~--~~t~~~~~~-~d~~~A~~va~~l 285 (515)
+.+...++..+.. . ..+.+-||||+||+++|+++++.+........ ...+. ++++.+... ++.+.+..++..+
T Consensus 23 ~~~v~~L~dy~~k~~~~k~vVvGlSGGIDSav~A~L~~~Alg~~~v~~g-~~~~~~i~v~mp~~~~~~~~d~~~~~~~~~ 101 (274)
T d1wxia1 23 RRSVDFLKSYLQTYPFIKSLVLGISGGQDSTLAGKLCQMAINELRLETG-NESLQFIAVRLPYGVQADEQDCQDAIAFIQ 101 (274)
T ss_dssp HHHHHHHHHHHHHSTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHHHC-CTTCEEEEEECCSSSCTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCCCeEEEECCCCHHHHHHHHHHHHHHHHHhhhhc-cccceEEEEecCCcccchHHHHHHHHHhhc
Confidence 3344456665542 1 34667899999999999999987632110000 01233 444433322 4445566677777
Q ss_pred CCCceEEEeChhHHHHHHHHHHHhhc-cCCCCc---ccchHHHHHHHHHHHhCCCeEEEeccCccccccCCcc
Q 010213 286 GTVHHEFHFTVQDGIDAIEEVIYHVE-TYDVTT---IRASTPMFLMSRKIKSLGVKMVISGEGSDEIFGGYLY 354 (515)
Q Consensus 286 g~~~~~~~~~~~~~~~~l~~~~~~~e-~~~~~~---~~~~~~~~~l~~~a~~~g~~vlltG~GgDelf~Gy~~ 354 (515)
+..+..+.++ .....+.+.+.... ...... +..-+.+..++..|...|.-|+=||. -+|++.||..
T Consensus 102 ~~~~~~i~i~--~~~~~~~~~l~~~~~~~~~~~~~N~~aRiR~~~ly~~A~~~~~lVlgTgN-ksE~~~Gy~T 171 (274)
T d1wxia1 102 PDRVLTVNIK--GAVLASEQALREAGIELSDFVRGNEKARERMKAQYSIAGMTSGVVVGTDH-AAEAITGFFT 171 (274)
T ss_dssp CSEEEECCCH--HHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCC-HHHHTTTCSC
T ss_pred Cccccccccc--hHHHHHHHhhhhcccccCcccccchhHHHHHHHHHHHHHhcCCcCCCCCC-cccccccccc
Confidence 7766555443 33333333332221 111100 11112333455566677765555654 6678889854
|
| >d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: N-type ATP pyrophosphatases domain: Argininosuccinate synthetase, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=97.83 E-value=2.9e-05 Score=65.66 Aligned_cols=63 Identities=17% Similarity=0.202 Sum_probs=50.9
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCChHHHHHHHHHHhCCCceEEEeChhH
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQD 298 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg~~~~~~~~~~~~ 298 (515)
+|.|++|||+||+++++++++.. +..+.++++......|.+.+...+..++..+........+
T Consensus 2 KvlvA~SGG~DS~vll~lL~e~~---------~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (165)
T d1j20a1 2 KIVLAYSGGLDTSIILKWLKETY---------RAEVIAFTADIGQGEEVEEAREKALRTGASKAIALDLKEE 64 (165)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHH---------TCEEEEEEEESSCSSCHHHHHHHHHHHTCSEEEEEECHHH
T ss_pred EEEEEEeCHHHHHHHHHHHHHcC---------CCEEEEEEeccCChHHHHHHHHHHHhccccceeeeehhhh
Confidence 47899999999999999998764 3577888887766778888888899999988777665443
|
| >d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: N-type ATP pyrophosphatases domain: Argininosuccinate synthetase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.70 E-value=0.00012 Score=63.30 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=30.3
Q ss_pred hccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeec
Q 010213 222 LMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGL 269 (515)
Q Consensus 222 l~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~ 269 (515)
+..+.+|.|++|||+||+++++++.+.. ..+.++++.+
T Consensus 7 ~~~gkKv~vA~SGGvDSsvll~lL~~~g----------~~v~~~~~~~ 44 (188)
T d1k92a1 7 LPVGQRIGIAFSGGLDTSAALLWMRQKG----------AVPYAYTANL 44 (188)
T ss_dssp CCTTSEEEEECCSSHHHHHHHHHHHHTT----------CEEEEEEEEC
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHHcC----------CcCeEEeeec
Confidence 3456789999999999999999998754 5677777654
|
| >d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: N-type ATP pyrophosphatases domain: Queuosine biosynthesis protein QueC species: Erwinia carotovora [TaxId: 554]
Probab=97.63 E-value=0.00019 Score=64.87 Aligned_cols=59 Identities=20% Similarity=0.293 Sum_probs=46.2
Q ss_pred ceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC--CCChHHHHHHHHHHhCCCceEEEeC
Q 010213 227 PFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE--GSPDLKYAKEVADYLGTVHHEFHFT 295 (515)
Q Consensus 227 ~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~--~~~d~~~A~~va~~lg~~~~~~~~~ 295 (515)
++.+++|||+||++.++++.+.. ..+.++++.+. ...|.+.++..+++++..++.+...
T Consensus 3 K~Vvl~SGGlDS~v~a~~l~~~g----------~~v~~v~~~ygqr~~~E~~~~~~~~~~~~~~~~~~~~~ 63 (230)
T d2pg3a1 3 RAVVVFSGGQDSTTCLIQALQDY----------DDVHCITFDYGQRHRAEIEVAQELSQKLGAAAHKVLDV 63 (230)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHC----------SEEEEEEEESSSSCHHHHHHHHHHHHHHTCSEEEEEEC
T ss_pred eEEEEcCCcHHHHHHHHHHHHcC----------CeEEEEEEECCCccHHHHHHHHHhHHhhccccccccch
Confidence 57799999999999999988764 56777777543 2347788899999999988776543
|
| >d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: N-type ATP pyrophosphatases domain: Argininosuccinate synthetase, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.62 E-value=8.8e-05 Score=62.74 Aligned_cols=58 Identities=19% Similarity=0.172 Sum_probs=40.8
Q ss_pred cceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCChHHHHHHHHHHhCCCceEEE
Q 010213 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFH 293 (515)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg~~~~~~~ 293 (515)
.+|.++||||+||++++.++.+.. .++.++++......|.................+.
T Consensus 2 ~KIvvalSGGvDS~vl~~lL~~~~----------~~v~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (168)
T d1vl2a1 2 EKVVLAYSGGLDTSVILKWLCEKG----------FDVIAYVANVGQKDDFVAIKEKALKTGASKVYVE 59 (168)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHTT----------CEEEEEEEESSCCCCHHHHHHHHHHHTCSEEEEE
T ss_pred CEEEEEeccHHHHHHHHHHHHHcC----------CeEEEEEcccCCCcchhHHHHHHHHhcCccchhh
Confidence 368999999999999999998753 6888998877665555444444444444444443
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| >d1zuna1 c.26.2.2 (A:1-211) Sulfate adenylyltransferase subunit 2, CysD {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: PAPS reductase-like domain: Sulfate adenylyltransferase subunit 2, CysD species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=97.15 E-value=0.00037 Score=61.21 Aligned_cols=67 Identities=10% Similarity=0.012 Sum_probs=45.7
Q ss_pred hccccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCC-C-hHHHHHHHHHHhCCCceEEEe
Q 010213 222 LMTDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGS-P-DLKYAKEVADYLGTVHHEFHF 294 (515)
Q Consensus 222 l~~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~-~-d~~~A~~va~~lg~~~~~~~~ 294 (515)
+....++.+++|||.||++++.++.+..... ..++..+.+..... + ..++++.+++.+|++......
T Consensus 23 ~~~~d~i~va~SGGKDS~vlL~L~~~~~~~~------~~~~~~v~~d~~~~~~et~~~~~~~~~~~~~~~~~~~~ 91 (211)
T d1zuna1 23 AAEFDNPVMLYSIGKDSAVMLHLARKAFFPG------KLPFPVMHVDTRWKFQEMYRFRDQMVEEMGLDLITHIN 91 (211)
T ss_dssp HHHCSSEEEECCSSHHHHHHHHHHHHHHTTS------CCSSCEEEECCSCCCHHHHHHHHHHHHTTTCCEEEECC
T ss_pred HHhcCCEEEEeCCcHHHHHHHHHHHhhcccc------cCCeeEEEecCcccchhhHHHHHHHHHHhCCceEEeec
Confidence 3445678999999999999999887654321 13344444433322 2 357899999999998776554
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| >d1sura_ c.26.2.2 (A:) Phosphoadenylyl sulphate (PAPS) reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: PAPS reductase-like domain: Phosphoadenylyl sulphate (PAPS) reductase species: Escherichia coli [TaxId: 562]
Probab=96.64 E-value=0.0066 Score=53.87 Aligned_cols=59 Identities=10% Similarity=0.127 Sum_probs=44.6
Q ss_pred cceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecC-CCCh-HHHHHHHHHHhCCCceEEEe
Q 010213 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLE-GSPD-LKYAKEVADYLGTVHHEFHF 294 (515)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~-~~~d-~~~A~~va~~lg~~~~~~~~ 294 (515)
.++.+.+|||.||++++.++.+.. +++..+.+... ..+| .++++++++.+|++.+.+..
T Consensus 45 ~~v~vs~SgGkDS~vllhl~~~~~----------~~~~vvf~DTg~~fpeT~e~~~~~~~~~~l~~~~~~~ 105 (215)
T d1sura_ 45 GEYVLSSSFGIQAAVSLHLVNQIR----------PDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRA 105 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS----------TTCEEEEEECSCBCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCEEEEecCChHHHHHHHHHHhcC----------CCccEEEEECCcCcHHHHHHHHHHHHhcCceeeEEec
Confidence 468899999999999999999875 45555554332 1234 57899999999998777654
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| >d2d13a1 c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: N-type ATP pyrophosphatases domain: Hypothetical protein PH1257 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.71 E-value=0.014 Score=51.91 Aligned_cols=87 Identities=17% Similarity=0.147 Sum_probs=53.2
Q ss_pred cceEEeecCCcchHHHHHHHHHHhccccccccCCCceee-EEeecCCC-------ChHHHHHHHHHHhCCCceEEEeChh
Q 010213 226 VPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHS-FCVGLEGS-------PDLKYAKEVADYLGTVHHEFHFTVQ 297 (515)
Q Consensus 226 ~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~-~t~~~~~~-------~d~~~A~~va~~lg~~~~~~~~~~~ 297 (515)
..|++++|||.||+.-+..|.+.. ..+.+ +|+..++. ......+..|+.+|+++..+.++.+
T Consensus 4 ~~V~vl~SGGKDS~lAl~~a~~~G----------~eV~~L~t~~~~~~~s~~~h~~~~~ll~~qAealgiPl~~~~~~~~ 73 (226)
T d2d13a1 4 ADVAVLYSGGKDSNYALYWALKSG----------LRVRYLVSMVSENEESYMYHTPNVELTSLQARALGIPIIKGFTKGE 73 (226)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHTT----------CEEEEEEEEECCC---------CCTTHHHHHHHHTCCEEEEEC--C
T ss_pred eeEEEEecCcHHHHHHHHHHHHcC----------CeeEEEEEEecCCCCcCcccCCCHHHHHHHHHhcCCCceEEecCCc
Confidence 368999999999998887776653 45543 44433221 2335678889999999876654321
Q ss_pred HHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccC
Q 010213 298 DGIDAIEEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEG 344 (515)
Q Consensus 298 ~~~~~l~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~G 344 (515)
. -+ ....+.+..++.|++.+.+|+=
T Consensus 74 ~-e~---------------------~~~~l~~~l~~~~v~~vv~Gdi 98 (226)
T d2d13a1 74 K-EK---------------------EVEDLKNVLEGLKVDGIVAGAL 98 (226)
T ss_dssp T-TS---------------------HHHHHHHHHHTBCCSEEECCCS
T ss_pred c-hH---------------------HHHHHHHHHHhcCccceEecce
Confidence 1 00 0112334456778888888754
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| >d1vbka1 c.26.2.6 (A:176-307) Hypothetical protein PH1313, C-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: Adenine nucleotide alpha hydrolases-like family: ThiI-like domain: Hypothetical protein PH1313, C-terminal domain species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.52 E-value=0.019 Score=46.32 Aligned_cols=90 Identities=18% Similarity=0.204 Sum_probs=50.3
Q ss_pred cccceEEeecCCcchHHHHHHHHHHhccccccccCCCceeeEEeecCCCChHHHHHHHHHHhCCCceEEEeChhHHHHHH
Q 010213 224 TDVPFGVLLSGGLDSSLVASITARHLAGTKAARQWGTQLHSFCVGLEGSPDLKYAKEVADYLGTVHHEFHFTVQDGIDAI 303 (515)
Q Consensus 224 ~~~~v~v~LSGGlDSs~iaa~a~~~~~~~~~~~~~~~~i~~~t~~~~~~~d~~~A~~va~~lg~~~~~~~~~~~~~~~~l 303 (515)
+.+++-++||||+ |.+-+.++.+.+ -++..+++.. +....+-++++++.+.-
T Consensus 3 t~Gk~l~LlSGGi-SpVAa~lmmkRG----------~~V~~v~f~~-~~~~~ekv~~l~~~L~~---------------- 54 (132)
T d1vbka1 3 TEGRMIGILHDEL-SALAIFLMMKRG----------VEVIPVYIGK-DDKNLEKVRSLWNLLKR---------------- 54 (132)
T ss_dssp TTCEEEEECSSHH-HHHHHHHHHHBT----------CEEEEEEESC-SSHHHHHHHHHHHHHHT----------------
T ss_pred cCceEEEeecCCc-hHHHHHHHHHCC----------CEEEEEEEcC-CHHHHHHHHHHHHHHHH----------------
Confidence 4567889999999 887777777653 5666666522 22233445555555421
Q ss_pred HHHHHhhccCCCCcccchHHHHHHHHHHHhCCCeEEEeccCccc
Q 010213 304 EEVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVISGEGSDE 347 (515)
Q Consensus 304 ~~~~~~~e~~~~~~~~~~~~~~~l~~~a~~~g~~vlltG~GgDe 347 (515)
..+ ...+....+.. .-.+.+.|++.|++.++||+-+..
T Consensus 55 --y~~-~~~~~~~v~~~---~~~~~riA~~~~a~~ivtG~~~e~ 92 (132)
T d1vbka1 55 --YSY-GSKGFLVVAES---FDRVLKLIRDFGVKGVIKGLRPND 92 (132)
T ss_dssp --TCT-TSCCCCEEESS---HHHHHHHHHHHTCCEEECCCCGGG
T ss_pred --hCC-CCCcEEEEeeH---HHHHHHHHHHhhhhceEEEEeccc
Confidence 000 00011111111 223456677789999999986644
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