Citrus Sinensis ID: 010228

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510----
MAGSWRARGSLVVLAIVFFGGLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVKGVSQRIADCLGNSIFLEFLQLLGEPLKLKSHLKLMQMVS
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccEEEEEEccEEEEEcccccccccccEEEEccccccccHHHHHHHcccccccccccccccccccccHHHHcccccccEEEEcccccEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHccccccccEEEcccccccHHHHHHHHHHHHcccEEEEEccHHHHHHHHHccccccccEEEEEEEccccccEEEEEEEEccEEEEEEcccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccccccccEEEEEcccccccccccccEEccccccccccccccEEEEEcccccccEEEEEEEccccccccccccccccccccccccccccccccEEEEccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccccEEEEEEEEccEEEEcccccccccEEccEEEccccEEEcHHHHccccccHHHEEccHHHccccccccHHHHHHHHHcccEEEEEccEEEEEEEEccEEEEEcHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccHHHHHHHHHHHHHcccEEEEEEEHHHHHHHHHccccccccEEEEEEEEccccEEEEEEEEEccEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHcccHHHcHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEccEEEEEEEEHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHccEEEEEcHHHHcHHHHHHHHHHccccccEcccccccHHHHHHHHHHHHccccccHHHHHcccccEccccEEEEEcccEEEEEEccccEccEEEEEEEEEccccccEEEEEEEcccccccccHHccccccHHHcccccccccccccEEEEEc
MAGSWRARGSLVVLAIVFFGGLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIandqgnritpswvaftdSERLIGEAAknqaavnpdrtiFDVKRLigrkfedkevqrdmklapykivnrdgkpyiqvqirdgetkvfspEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGldkkggeknILVFdlgggtfdvsILTIDNGVFEVLstngdthlggedfDQRVMEYFIKLIKKkhgkdiskdKRAIGKLRREAERAKRALSSQHQVRVEIESLfdgidfseplTRARFEELNNDLFRKTMGPVKKAMedagleknqIDEIVLvggstripKVQQLLKDyfdgkepnkgvnpdeAVAYGAAVqggilsgeggdetkdillldvapltlgietvggvmtkliprntviptkksqvfttyqdqqtTVSIQVKGVSQRIADCLGNSIFLEFLQLLGEPLKLKSHLKLMQMVS
MAGSWRARGSLVVLAIVFFGGLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIandqgnritPSWVAFTDSERLIGEaaknqaavnpdrtifdvKRLIgrkfedkevqrdmklapykivnrdgkpyiqvqirdgetkvfsPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNgdthlggedfDQRVMEYFIKLikkkhgkdiskdkraiGKLRREAERAkralssqhqvrvEIESlfdgidfsePLTRARFEELNNDLFRKTMGPVKKAMedagleknqIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGgvmtkliprntviptkksqVFTTYQDQQTTVSIQVKGVSQRIADCLGNSIFLEFLQLLGEPLKLKSHLKLMQMVS
MAGSWRARGSLVVLAIVFFGGLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFiklikkkhgkdiskdkRAIGklrreaerakralssQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVKGVSQRIADCLGNSIFLEFLQLLGEPLKLKSHLKLMQMVS
*****RARGSLVVLAIVFFGGLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKK********************************RVEIESLFDGIDFSEPLTRARFEELNNDLFRK*************LEKNQIDEIVLVGGSTRIPKVQQLLKDYFDG**********EAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVKGVSQRIADCLGNSIFLEFLQLLGEPLKLK**********
********GSLVVLAIVFFGGLF**************VIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVKGVSQRIADCLGNSIFLEFLQLLGEPLKLKSHLKLMQMVS
MAGSWRARGSLVVLAIVFFGGLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKL***************QVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVKGVSQRIADCLGNSIFLEFLQLLGEPLKLKSHLKLMQMVS
***SWRARGSLVVLAIVFFGGLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVKGVSQRIADCLGNSIFLEFLQLLGEPLKLKSHLKLMQMVS
iiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAGSWRARGSLVVLAIVFFGGLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDxxxxxxxxxxxxxxxxxxxxxLSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVKGVSQRIADCLGNSIFLEFLQLLGEPLKLKSHLKLMQMVS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query514 2.2.26 [Sep-21-2011]
Q03685 668 Luminal-binding protein 5 N/A no 0.941 0.724 0.927 0.0
Q03684 667 Luminal-binding protein 4 N/A no 0.937 0.722 0.921 0.0
P49118 666 Luminal-binding protein O N/A no 0.941 0.726 0.915 0.0
Q9LKR3 669 Mediator of RNA polymeras yes no 0.939 0.721 0.907 0.0
Q39043 668 Mediator of RNA polymeras yes no 0.939 0.723 0.905 0.0
P24067 663 Luminal-binding protein 2 N/A no 0.931 0.722 0.902 0.0
O24581 663 Luminal-binding protein 3 N/A no 0.931 0.722 0.9 0.0
Q42434 668 Luminal-binding protein O N/A no 0.941 0.724 0.878 0.0
Q8H1B3 675 Probable mediator of RNA no no 0.910 0.693 0.822 0.0
P07823 654 78 kDa glucose-regulated N/A no 0.865 0.680 0.755 0.0
>sp|Q03685|BIP5_TOBAC Luminal-binding protein 5 OS=Nicotiana tabacum GN=BIP5 PE=2 SV=1 Back     alignment and function desciption
 Score =  923 bits (2386), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/485 (92%), Positives = 467/485 (96%), Gaps = 1/485 (0%)

Query: 1   MAGSWRARGSLVVLAIVFFGGLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEI 60
           MAG+W+ R SL+V AIV FG LFA SIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEI
Sbjct: 1   MAGAWKRRASLIVFAIVLFGSLFAFSIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEI 60

Query: 61  IANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMK 120
           IANDQGNRITPSWVAFTD ERLIGEAAKNQAAVNP+RTIFDVKRLIGRKF+DKEVQRD K
Sbjct: 61  IANDQGNRITPSWVAFTDGERLIGEAAKNQAAVNPERTIFDVKRLIGRKFDDKEVQRDKK 120

Query: 121 LAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVP 180
           L PY+IVN+DGKPYIQV+I+DGETKVFSPEEISAMILTKMKETAEA+LGKKIKDAVVTVP
Sbjct: 121 LVPYEIVNKDGKPYIQVKIKDGETKVFSPEEISAMILTKMKETAEAYLGKKIKDAVVTVP 180

Query: 181 AYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVS 240
           AYFNDAQRQATKDAG+IAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVS
Sbjct: 181 AYFNDAQRQATKDAGVIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVS 240

Query: 241 ILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAE 300
           ILTIDNGVFEVL+TNGDTHLGGEDFDQR+MEYFIKLIKKKHGKDISKD RA+GKLRREAE
Sbjct: 241 ILTIDNGVFEVLATNGDTHLGGEDFDQRIMEYFIKLIKKKHGKDISKDNRALGKLRREAE 300

Query: 301 RAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEK 360
           RAKRALSSQHQVRVEIESLFDG+DFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEK
Sbjct: 301 RAKRALSSQHQVRVEIESLFDGVDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEK 360

Query: 361 NQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDET 420
           NQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDET
Sbjct: 361 NQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDET 420

Query: 421 KDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQV-KGVSQ 479
           KDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTV+I V +G   
Sbjct: 421 KDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVTISVFEGERS 480

Query: 480 RIADC 484
              DC
Sbjct: 481 LTKDC 485
Probably plays a role in facilitating the assembly of multimeric protein complexes inside the ER.
Nicotiana tabacum (taxid: 4097)
>sp|Q03684|BIP4_TOBAC Luminal-binding protein 4 OS=Nicotiana tabacum GN=BIP4 PE=2 SV=1 Back     alignment and function description
>sp|P49118|BIP_SOLLC Luminal-binding protein OS=Solanum lycopersicum PE=2 SV=1 Back     alignment and function description
>sp|Q9LKR3|MD37A_ARATH Mediator of RNA polymerase II transcription subunit 37a OS=Arabidopsis thaliana GN=MED37A PE=1 SV=1 Back     alignment and function description
>sp|Q39043|MD37F_ARATH Mediator of RNA polymerase II transcription subunit 37f OS=Arabidopsis thaliana GN=MED37F PE=1 SV=2 Back     alignment and function description
>sp|P24067|BIP2_MAIZE Luminal-binding protein 2 OS=Zea mays GN=BIPE2 PE=1 SV=3 Back     alignment and function description
>sp|O24581|BIP3_MAIZE Luminal-binding protein 3 OS=Zea mays GN=BIPE3 PE=2 SV=1 Back     alignment and function description
>sp|Q42434|BIP_SPIOL Luminal-binding protein OS=Spinacia oleracea GN=HSC70 PE=2 SV=1 Back     alignment and function description
>sp|Q8H1B3|MD37B_ARATH Probable mediator of RNA polymerase II transcription subunit 37b OS=Arabidopsis thaliana GN=MED37B PE=1 SV=1 Back     alignment and function description
>sp|P07823|GRP78_MESAU 78 kDa glucose-regulated protein OS=Mesocricetus auratus GN=HSPA5 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query514
449452228 665 PREDICTED: luminal-binding protein 5-lik 0.941 0.727 0.942 0.0
6911549 665 heat shock protein 70 [Cucumis sativus] 0.941 0.727 0.940 0.0
255555659 664 heat shock protein, putative [Ricinus co 0.939 0.727 0.946 0.0
57639078 667 ER-binding protein [Malus pumila] 0.941 0.725 0.938 0.0
211906506 666 luminal binding protein [Gossypium hirsu 0.941 0.726 0.940 0.0
729623 668 RecName: Full=Luminal-binding protein 5; 0.941 0.724 0.927 0.0
224058097 666 predicted protein [Populus trichocarpa] 0.939 0.725 0.936 0.0
224072248 666 predicted protein [Populus trichocarpa] 0.939 0.725 0.934 0.0
356523657 667 PREDICTED: luminal-binding protein 5 [Gl 0.939 0.724 0.931 0.0
13398537495 BiP-isoform D [Glycine max] 0.939 0.975 0.931 0.0
>gi|449452228|ref|XP_004143862.1| PREDICTED: luminal-binding protein 5-like [Cucumis sativus] gi|449524930|ref|XP_004169474.1| PREDICTED: luminal-binding protein 5-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  935 bits (2417), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/485 (94%), Positives = 473/485 (97%), Gaps = 1/485 (0%)

Query: 1   MAGSWRARGSLVVLAIVFFGGLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEI 60
           MA SWRARGSL+VLAIVFFGGLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEI
Sbjct: 1   MASSWRARGSLIVLAIVFFGGLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEI 60

Query: 61  IANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMK 120
           IANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNP+RT+FDVKRLIGRKF+DKEVQ+DMK
Sbjct: 61  IANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPERTVFDVKRLIGRKFDDKEVQKDMK 120

Query: 121 LAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVP 180
           L PYKIVN+DGKPYIQV+I+DGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVP
Sbjct: 121 LVPYKIVNKDGKPYIQVKIKDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVP 180

Query: 181 AYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVS 240
           AYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVS
Sbjct: 181 AYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVS 240

Query: 241 ILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAE 300
           ILTIDNGVFEVL+TNGDTHLGGEDFDQR+MEYFIKLIKKKHGKDISKD RA+GKLRRE+E
Sbjct: 241 ILTIDNGVFEVLATNGDTHLGGEDFDQRIMEYFIKLIKKKHGKDISKDNRALGKLRRESE 300

Query: 301 RAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEK 360
           RAKRALSSQHQVRVEIESLFDG DFSEPLTRARFEELNNDLFRKTMGPVKKAM+DAGLEK
Sbjct: 301 RAKRALSSQHQVRVEIESLFDGTDFSEPLTRARFEELNNDLFRKTMGPVKKAMDDAGLEK 360

Query: 361 NQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDET 420
           NQIDEIVLVGGSTRIPKVQQLLKDYF+GKEPNKGVNPDEAVAYGAAVQG ILSGEGG+ET
Sbjct: 361 NQIDEIVLVGGSTRIPKVQQLLKDYFEGKEPNKGVNPDEAVAYGAAVQGSILSGEGGEET 420

Query: 421 KDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQV-KGVSQ 479
           KDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQV +G   
Sbjct: 421 KDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERS 480

Query: 480 RIADC 484
              DC
Sbjct: 481 LTKDC 485

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|6911549|emb|CAB72128.1| heat shock protein 70 [Cucumis sativus] Back     alignment and taxonomy information
>gi|255555659|ref|XP_002518865.1| heat shock protein, putative [Ricinus communis] gi|223541852|gb|EEF43398.1| heat shock protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|57639078|gb|AAW55475.1| ER-binding protein [Malus pumila] Back     alignment and taxonomy information
>gi|211906506|gb|ACJ11746.1| luminal binding protein [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|729623|sp|Q03685.1|BIP5_TOBAC RecName: Full=Luminal-binding protein 5; Short=BiP 5; AltName: Full=78 kDa glucose-regulated protein homolog 5; Short=GRP-78-5; Flags: Precursor gi|19813|emb|CAA42660.1| luminal binding protein (BiP) [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|224058097|ref|XP_002299448.1| predicted protein [Populus trichocarpa] gi|222846706|gb|EEE84253.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224072248|ref|XP_002303672.1| predicted protein [Populus trichocarpa] gi|222841104|gb|EEE78651.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356523657|ref|XP_003530453.1| PREDICTED: luminal-binding protein 5 [Glycine max] Back     alignment and taxonomy information
>gi|13398537|gb|AAK21920.1|AF338252_1 BiP-isoform D [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query514
UNIPROTKB|B9RYP6 664 RCOM_1312280 "Heat shock prote 0.939 0.727 0.884 3.2e-223
TAIR|locus:2182783 669 BIP1 [Arabidopsis thaliana (ta 0.939 0.721 0.849 2.6e-214
TAIR|locus:2165715 668 BIP2 [Arabidopsis thaliana (ta 0.939 0.723 0.847 2.6e-214
TAIR|locus:2035994 675 BIP3 "binding protein 3" [Arab 0.910 0.693 0.774 2.3e-190
UNIPROTKB|Q90593 652 HSPA5 "78 kDa glucose-regulate 0.892 0.703 0.683 2.6e-166
MGI|MGI:95835 655 Hspa5 "heat shock protein 5" [ 0.896 0.703 0.682 3.3e-166
UNIPROTKB|G3I8R9 654 I79_019946 "78 kDa glucose-reg 0.865 0.680 0.702 1.1e-165
UNIPROTKB|P07823 654 HSPA5 "78 kDa glucose-regulate 0.865 0.680 0.702 1.1e-165
RGD|2843 654 Hspa5 "heat shock protein 5" [ 0.865 0.680 0.702 1.1e-165
UNIPROTKB|F1PIC7 654 HSPA5 "Uncharacterized protein 0.877 0.689 0.692 1.4e-165
UNIPROTKB|B9RYP6 RCOM_1312280 "Heat shock protein, putative" [Ricinus communis (taxid:3988)] Back     alignment and assigned GO terms
 Score = 2155 (763.7 bits), Expect = 3.2e-223, P = 3.2e-223
 Identities = 429/485 (88%), Positives = 442/485 (91%)

Query:     1 MAGSWRARGSLVVLAIVFFGGLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEI 60
             MAGSWRARG+ VV AIV FG LFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEI
Sbjct:     1 MAGSWRARGA-VVSAIVLFGCLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEI 59

Query:    61 IANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMK 120
             IANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNP+RTIFDVKRLIGRKFEDKEVQRDMK
Sbjct:    60 IANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPERTIFDVKRLIGRKFEDKEVQRDMK 119

Query:   121 LAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVP 180
             L PYKIVN+DGKPYIQV+I+DGETKVFSPEEISAMILTKMKETAEA+LGKKIKDAVVTVP
Sbjct:   120 LVPYKIVNKDGKPYIQVKIKDGETKVFSPEEISAMILTKMKETAEAYLGKKIKDAVVTVP 179

Query:   181 AYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVS 240
             AYFNDAQRQATKDAG+IAGLNVARIINEPTAAAIAYGLDK+GGEKNILVFDLGGGTFDVS
Sbjct:   180 AYFNDAQRQATKDAGVIAGLNVARIINEPTAAAIAYGLDKRGGEKNILVFDLGGGTFDVS 239

Query:   241 ILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFXXXXXXXXXXXXXXXXRAIGXXXXXXX 300
             ILTIDNGVFEVLSTNGDTHLGGEDFDQR+MEYF                RA+G       
Sbjct:   240 ILTIDNGVFEVLSTNGDTHLGGEDFDQRIMEYFIKLIKKKHGKDISKDNRALGKLRREAE 299

Query:   301 XXXXXXXXQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEK 360
                     QHQVRVEIESLFDG+DFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGL+K
Sbjct:   300 RAKRALSSQHQVRVEIESLFDGVDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLQK 359

Query:   361 NQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDET 420
             NQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDET
Sbjct:   360 NQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDET 419

Query:   421 KDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQV-KGVSQ 479
             KDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQV +G   
Sbjct:   420 KDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERS 479

Query:   480 RIADC 484
                DC
Sbjct:   480 LTKDC 484
GO:0005783 "endoplasmic reticulum" evidence=IDA
TAIR|locus:2182783 BIP1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165715 BIP2 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035994 BIP3 "binding protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q90593 HSPA5 "78 kDa glucose-regulated protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:95835 Hspa5 "heat shock protein 5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|G3I8R9 I79_019946 "78 kDa glucose-regulated protein" [Cricetulus griseus (taxid:10029)] Back     alignment and assigned GO terms
UNIPROTKB|P07823 HSPA5 "78 kDa glucose-regulated protein" [Mesocricetus auratus (taxid:10036)] Back     alignment and assigned GO terms
RGD|2843 Hspa5 "heat shock protein 5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1PIC7 HSPA5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q91883GRP78_XENLANo assigned EC number0.72040.89490.6990N/Ano
O24581BIP3_MAIZENo assigned EC number0.90.93190.7224N/Ano
P29844HSP7C_DROMENo assigned EC number0.73970.89680.7027yesno
Q9LKR3MD37A_ARATHNo assigned EC number0.90720.93960.7219yesno
Q5R4P0GRP78_PONABNo assigned EC number0.75730.85210.6697yesno
P10592HSP72_YEASTNo assigned EC number0.68630.85400.6870yesno
Q16956GRP78_APLCANo assigned EC number0.73460.89680.6911N/Ano
P07823GRP78_MESAUNo assigned EC number0.75550.86570.6804N/Ano
Q03684BIP4_TOBACNo assigned EC number0.92130.93770.7226N/Ano
Q03685BIP5_TOBACNo assigned EC number0.92780.94160.7245N/Ano
Q8T869BIP2_DICDINo assigned EC number0.72270.84820.6626yesno
Q24895GRP78_ECHMUNo assigned EC number0.71170.88320.6995N/Ano
P24067BIP2_MAIZENo assigned EC number0.90200.93190.7224N/Ano
P10591HSP71_YEASTNo assigned EC number0.68630.85400.6838yesno
Q6FW50GRP78_CANGANo assigned EC number0.68250.88520.6821yesno
P83616GRP78_ASPNGNo assigned EC number0.66520.91430.6994yesno
Q42434BIP_SPIOLNo assigned EC number0.87830.94160.7245N/Ano
P49118BIP_SOLLCNo assigned EC number0.91540.94160.7267N/Ano
Q24798GRP78_ECHGRNo assigned EC number0.71020.88520.6989N/Ano
Q39043MD37F_ARATHNo assigned EC number0.90510.93960.7230yesno
A2Q0Z1HSP7C_HORSENo assigned EC number0.69310.85210.6780yesno
P27420HSP7C_CAEELNo assigned EC number0.74820.84820.6596yesno
Q3S4T7GRP78_SPETRNo assigned EC number0.75730.85210.6697N/Ano
P06761GRP78_RATNo assigned EC number0.75550.86570.6804yesno
P19208HSP7C_CAEBRNo assigned EC number0.74820.84820.6596N/Ano
O59855HSP72_SCHPONo assigned EC number0.67180.86570.6877yesno
Q0VCX2GRP78_BOVINNo assigned EC number0.75110.86570.6793yesno
P20029GRP78_MOUSENo assigned EC number0.75550.86570.6793yesno
P11021GRP78_HUMANNo assigned EC number0.75960.85210.6697yesno
Q90593GRP78_CHICKNo assigned EC number0.74940.86380.6809yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query514
cd10241374 cd10241, HSPA5-like_NBD, Nucleotide-binding domain 0.0
pfam00012 598 pfam00012, HSP70, Hsp70 protein 0.0
PTZ00009 653 PTZ00009, PTZ00009, heat shock 70 kDa protein; Pro 0.0
cd10233376 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding 0.0
PRK00290 627 PRK00290, dnaK, molecular chaperone DnaK; Provisio 0.0
TIGR02350 595 TIGR02350, prok_dnaK, chaperone protein DnaK 0.0
cd10234376 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding d 0.0
COG0443 579 COG0443, DnaK, Molecular chaperone [Posttranslatio 0.0
PTZ00400 663 PTZ00400, PTZ00400, DnaK-type molecular chaperone; 0.0
PRK13411 653 PRK13411, PRK13411, molecular chaperone DnaK; Prov 0.0
CHL00094 621 CHL00094, dnaK, heat shock protein 70 0.0
cd10170369 cd10170, HSP70_NBD, Nucleotide-binding domain of t 0.0
cd11733377 cd11733, HSPA9-like_NBD, Nucleotide-binding domain 1e-179
PRK13410 668 PRK13410, PRK13410, molecular chaperone DnaK; Prov 1e-173
PRK05183 616 PRK05183, hscA, chaperone protein HscA; Provisiona 1e-165
cd11734373 cd11734, Ssq1_like_NBD, Nucleotide-binding domain 1e-164
PLN03184 673 PLN03184, PLN03184, chloroplast Hsp70; Provisional 1e-163
PTZ00186 657 PTZ00186, PTZ00186, heat shock 70 kDa precursor pr 1e-160
TIGR01991 599 TIGR01991, HscA, Fe-S protein assembly chaperone H 1e-155
cd10228381 cd10228, HSPA4_like_NDB, Nucleotide-binding domain 1e-137
cd10235339 cd10235, HscC_like_NBD, Nucleotide-binding domain 1e-132
cd10236355 cd10236, HscA_like_NBD, Nucleotide-binding domain 1e-127
cd10238375 cd10238, HSPA14-like_NBD, Nucleotide-binding domai 1e-126
cd10237417 cd10237, HSPA13-like_NBD, Nucleotide-binding domai 1e-125
cd10230388 cd10230, HYOU1-like_NBD, Nucleotide-binding domain 1e-112
cd10232386 cd10232, ScSsz1p_like_NBD, Nucleotide-binding doma 5e-98
cd11739383 cd11739, HSPH1_NBD, Nucleotide-binding domain of H 1e-92
cd11732377 cd11732, HSP105-110_like_NBD, Nucleotide-binding d 5e-89
cd11737383 cd11737, HSPA4_NBD, Nucleotide-binding domain of H 7e-86
cd11738383 cd11738, HSPA4L_NBD, Nucleotide-binding domain of 6e-81
PRK01433 595 PRK01433, hscA, chaperone protein HscA; Provisiona 1e-80
cd10231415 cd10231, YegD_like, Escherichia coli YegD, a putat 1e-36
cd10229404 cd10229, HSPA12_like_NBD, Nucleotide-binding domai 1e-18
cd10225320 cd10225, MreB_like, MreB and similar proteins 2e-14
PRK11678450 PRK11678, PRK11678, putative chaperone; Provisiona 1e-11
TIGR00904333 TIGR00904, mreB, cell shape determining protein, M 4e-10
pfam06723327 pfam06723, MreB_Mbl, MreB/Mbl protein 4e-09
PRK13930335 PRK13930, PRK13930, rod shape-determining protein 1e-08
PRK13928336 PRK13928, PRK13928, rod shape-determining protein 4e-08
COG1077342 COG1077, MreB, Actin-like ATPase involved in cell 9e-08
COG4820277 COG4820, EutJ, Ethanolamine utilization protein, p 2e-07
cd00012185 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide- 5e-07
PRK15080267 PRK15080, PRK15080, ethanolamine utilization prote 6e-07
cd10227312 cd10227, ParM_like, Plasmid segregation protein Pa 7e-07
TIGR02529239 TIGR02529, EutJ, ethanolamine utilization protein 2e-06
COG0849418 COG0849, ftsA, Cell division ATPase FtsA [Cell div 5e-06
PRK13927334 PRK13927, PRK13927, rod shape-determining protein 6e-06
PRK13929335 PRK13929, PRK13929, rod-share determining protein 3e-05
TIGR01312481 TIGR01312, XylB, D-xylulose kinase 8e-04
cd07809487 cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 0.003
>gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5 and similar proteins Back     alignment and domain information 
 Score =  796 bits (2057), Expect = 0.0
 Identities = 316/375 (84%), Positives = 349/375 (93%), Gaps = 1/375 (0%)

Query: 36  GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNP 95
           GTVIGIDLGTTYSCVGV+KNG VEIIANDQGNRITPS+VAFTD ERLIG+AAKNQA  NP
Sbjct: 1   GTVIGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTDGERLIGDAAKNQATSNP 60

Query: 96  DRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAM 155
           + TIFDVKRLIGRKF+DKEVQ+D+KL PYK+VN+DGKPYI+V ++ GE K FSPEEISAM
Sbjct: 61  ENTIFDVKRLIGRKFDDKEVQKDIKLLPYKVVNKDGKPYIEVDVK-GEKKTFSPEEISAM 119

Query: 156 ILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIA 215
           +LTKMKE AEA+LGKK+K AVVTVPAYFNDAQRQATKDAG IAGLNV RIINEPTAAAIA
Sbjct: 120 VLTKMKEIAEAYLGKKVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIA 179

Query: 216 YGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIK 275
           YGLDKKGGEKNILVFDLGGGTFDVS+LTIDNGVFEVL+TNGDTHLGGEDFDQRVME+FIK
Sbjct: 180 YGLDKKGGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEHFIK 239

Query: 276 LIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFE 335
           L KKKHGKDISKDKRA+ KLRRE E+AKRALSSQHQ R+EIESLFDG DFSE LTRA+FE
Sbjct: 240 LFKKKHGKDISKDKRALQKLRREVEKAKRALSSQHQTRIEIESLFDGEDFSETLTRAKFE 299

Query: 336 ELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGV 395
           ELN DLF+KT+ PVKK +EDA L+K+ IDEIVLVGGSTRIPKVQQLLK++F+GKEP++G+
Sbjct: 300 ELNMDLFKKTLKPVKKVLEDADLKKSDIDEIVLVGGSTRIPKVQQLLKEFFNGKEPSRGI 359

Query: 396 NPDEAVAYGAAVQGG 410
           NPDEAVAYGAAVQ G
Sbjct: 360 NPDEAVAYGAAVQAG 374

This subfamily includes human HSPA5 (also known as 70-kDa heat shock protein 5, glucose-regulated protein 78/GRP78, and immunoglobulin heavy chain-binding protein/BIP, MIF2; the gene encoding HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p (also known as Grp78p), and related proteins. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. HSPA5 and Kar2p are chaperones of the endoplasmic reticulum (ER). Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Multiple ER DNAJ domain proteins have been identified and may exist in distinct complexes with HSPA5 in various locations in the ER, for example DNAJC3-p58IPK in the lumen. HSPA5-NEFs include SIL1 and an atypical HSP70 family protein HYOU1/ORP150. The ATPase activity of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p. Length = 374
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein Back     alignment and domain information
>gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional Back     alignment and domain information
>gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar proteins Back     alignment and domain information
>gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional Back     alignment and domain information
>gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK Back     alignment and domain information
>gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human HSPA9 and similar proteins Back     alignment and domain information
>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional Back     alignment and domain information
>gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional Back     alignment and domain information
>gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70 Back     alignment and domain information
>gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family Back     alignment and domain information
>gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9, Escherichia coli DnaK, and similar proteins Back     alignment and domain information
>gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional Back     alignment and domain information
>gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional Back     alignment and domain information
>gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces cerevisiae Ssq1 and similar proteins Back     alignment and domain information
>gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional Back     alignment and domain information
>gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein; Provisional Back     alignment and domain information
>gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA Back     alignment and domain information
>gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4 and similar proteins Back     alignment and domain information
>gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia coli HscC and similar proteins Back     alignment and domain information
>gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and similar proteins Back     alignment and domain information
>gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14 and similar proteins Back     alignment and domain information
>gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13 and similar proteins Back     alignment and domain information
>gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1 and similar proteins Back     alignment and domain information
>gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of Saccharmomyces cerevisiae Ssz1pp and similar proteins Back     alignment and domain information
>gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1 Back     alignment and domain information
>gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4, HYOU1, and similar proteins Back     alignment and domain information
>gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4 Back     alignment and domain information
>gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L Back     alignment and domain information
>gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional Back     alignment and domain information
>gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins Back     alignment and domain information
>gnl|CDD|212671 cd10229, HSPA12_like_NBD, Nucleotide-binding domain of HSPA12A, HSPA12B and similar proteins Back     alignment and domain information
>gnl|CDD|212668 cd10225, MreB_like, MreB and similar proteins Back     alignment and domain information
>gnl|CDD|236954 PRK11678, PRK11678, putative chaperone; Provisional Back     alignment and domain information
>gnl|CDD|129982 TIGR00904, mreB, cell shape determining protein, MreB/Mrl family Back     alignment and domain information
>gnl|CDD|115385 pfam06723, MreB_Mbl, MreB/Mbl protein Back     alignment and domain information
>gnl|CDD|237564 PRK13930, PRK13930, rod shape-determining protein MreB; Provisional Back     alignment and domain information
>gnl|CDD|237563 PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional Back     alignment and domain information
>gnl|CDD|224003 COG1077, MreB, Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|227157 COG4820, EutJ, Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily Back     alignment and domain information
>gnl|CDD|237904 PRK15080, PRK15080, ethanolamine utilization protein EutJ; Provisional Back     alignment and domain information
>gnl|CDD|212669 cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins Back     alignment and domain information
>gnl|CDD|213718 TIGR02529, EutJ, ethanolamine utilization protein EutJ family protein Back     alignment and domain information
>gnl|CDD|223918 COG0849, ftsA, Cell division ATPase FtsA [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|237562 PRK13927, PRK13927, rod shape-determining protein MreB; Provisional Back     alignment and domain information
>gnl|CDD|184403 PRK13929, PRK13929, rod-share determining protein MreBH; Provisional Back     alignment and domain information
>gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase Back     alignment and domain information
>gnl|CDD|198375 cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of the FGGY family of carbohydrate kinases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 514
KOG0100 663 consensus Molecular chaperones GRP78/BiP/KAR2, HSP 100.0
PTZ00186 657 heat shock 70 kDa precursor protein; Provisional 100.0
PTZ00009 653 heat shock 70 kDa protein; Provisional 100.0
PTZ00400 663 DnaK-type molecular chaperone; Provisional 100.0
PRK13411 653 molecular chaperone DnaK; Provisional 100.0
PRK13410 668 molecular chaperone DnaK; Provisional 100.0
PLN03184 673 chloroplast Hsp70; Provisional 100.0
PRK00290 627 dnaK molecular chaperone DnaK; Provisional 100.0
TIGR01991 599 HscA Fe-S protein assembly chaperone HscA. The Hea 100.0
TIGR02350 595 prok_dnaK chaperone protein DnaK. Members of this 100.0
KOG0101 620 consensus Molecular chaperones HSP70/HSC70, HSP70 100.0
CHL00094 621 dnaK heat shock protein 70 100.0
PRK05183 616 hscA chaperone protein HscA; Provisional 100.0
PF00012 602 HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho 100.0
KOG0102 640 consensus Molecular chaperones mortalin/PBP74/GRP7 100.0
PRK01433 595 hscA chaperone protein HscA; Provisional 100.0
COG0443 579 DnaK Molecular chaperone [Posttranslational modifi 100.0
KOG0103 727 consensus Molecular chaperones HSP105/HSP110/SSE1, 100.0
KOG0104 902 consensus Molecular chaperones GRP170/SIL1, HSP70 100.0
PRK11678450 putative chaperone; Provisional 100.0
PRK13928336 rod shape-determining protein Mbl; Provisional 100.0
PRK13929335 rod-share determining protein MreBH; Provisional 100.0
PRK13927334 rod shape-determining protein MreB; Provisional 100.0
TIGR00904333 mreB cell shape determining protein, MreB/Mrl fami 100.0
PRK13930335 rod shape-determining protein MreB; Provisional 100.0
PF06723326 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba 100.0
COG1077342 MreB Actin-like ATPase involved in cell morphogene 100.0
TIGR02529239 EutJ ethanolamine utilization protein EutJ family 99.97
PRK15080267 ethanolamine utilization protein EutJ; Provisional 99.96
TIGR01174371 ftsA cell division protein FtsA. This bacterial ce 99.93
PRK09472420 ftsA cell division protein FtsA; Reviewed 99.93
COG0849418 ftsA Cell division ATPase FtsA [Cell division and 99.89
cd00012371 ACTIN Actin; An ubiquitous protein involved in the 99.75
smart00268373 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki 99.73
PTZ00280414 Actin-related protein 3; Provisional 99.68
COG4820277 EutJ Ethanolamine utilization protein, possible ch 99.67
PRK13917344 plasmid segregation protein ParM; Provisional 99.64
PTZ00004378 actin-2; Provisional 99.59
PTZ00452375 actin; Provisional 99.58
PTZ00281376 actin; Provisional 99.57
PF00022393 Actin: Actin; InterPro: IPR004000 Actin [, ] is a 99.55
TIGR01175348 pilM type IV pilus assembly protein PilM. This pro 99.53
TIGR03739320 PRTRC_D PRTRC system protein D. A novel genetic sy 99.52
PTZ00466380 actin-like protein; Provisional 99.52
PF11104340 PilM_2: Type IV pilus assembly protein PilM;; PDB: 99.44
PF06406318 StbA: StbA protein; InterPro: IPR009440 This entry 99.29
KOG0679426 consensus Actin-related protein - Arp4p/Act3p [Cyt 99.28
COG5277444 Actin and related proteins [Cytoskeleton] 99.17
COG4972354 PilM Tfp pilus assembly protein, ATPase PilM [Cell 99.16
TIGR00241248 CoA_E_activ CoA-substrate-specific enzyme activase 99.14
TIGR03192293 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s 99.03
TIGR03286404 methan_mark_15 putative methanogenesis marker prot 98.83
PRK10719475 eutA reactivating factor for ethanolamine ammonia 98.78
TIGR02261262 benz_CoA_red_D benzoyl-CoA reductase, bcr type, su 98.77
TIGR02259432 benz_CoA_red_A benzoyl-CoA reductase, bcr type, su 98.77
KOG0676372 consensus Actin and related proteins [Cytoskeleton 98.75
PF075201002 SrfB: Virulence factor SrfB; InterPro: IPR009216 T 98.68
KOG0677389 consensus Actin-related protein Arp2/3 complex, su 98.67
COG1924396 Activator of 2-hydroxyglutaryl-CoA dehydratase (HS 98.67
PRK13317277 pantothenate kinase; Provisional 98.42
PF08841332 DDR: Diol dehydratase reactivase ATPase-like domai 98.12
COG44571014 SrfB Uncharacterized protein conserved in bacteria 97.91
KOG0680400 consensus Actin-related protein - Arp6p [Cytoskele 97.79
KOG0797618 consensus Actin-related protein [Cytoskeleton] 97.78
TIGR00555279 panK_eukar pantothenate kinase, eukaryotic/staphyl 97.56
PF01869271 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; In 97.54
PF06277473 EutA: Ethanolamine utilisation protein EutA; Inter 97.43
PF02782198 FGGY_C: FGGY family of carbohydrate kinases, C-ter 96.84
smart00842187 FtsA Cell division protein FtsA. FtsA is essential 96.78
COG1069544 AraB Ribulose kinase [Energy production and conver 96.46
PRK11031496 guanosine pentaphosphate phosphohydrolase; Provisi 96.44
PRK10854513 exopolyphosphatase; Provisional 96.28
KOG0681 645 consensus Actin-related protein - Arp5p [Cytoskele 96.24
TIGR01315541 5C_CHO_kinase FGGY-family pentulose kinase. This m 96.22
PRK15027484 xylulokinase; Provisional 96.19
PLN02669556 xylulokinase 96.06
COG0248492 GppA Exopolyphosphatase [Nucleotide transport and 95.82
TIGR03706300 exo_poly_only exopolyphosphatase. It appears that 95.76
PF14450120 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B 95.75
COG4819473 EutA Ethanolamine utilization protein, possible ch 95.71
TIGR01312481 XylB D-xylulose kinase. D-xylulose kinase (XylB) g 95.53
PTZ00294504 glycerol kinase-like protein; Provisional 95.5
PRK00047498 glpK glycerol kinase; Provisional 95.49
TIGR01311493 glycerol_kin glycerol kinase. This model describes 95.44
PRK04123548 ribulokinase; Provisional 95.39
TIGR02628465 fuculo_kin_coli L-fuculokinase. Members of this fa 95.33
TIGR01234536 L-ribulokinase L-ribulokinase. This enzyme catalyz 95.32
KOG0681645 consensus Actin-related protein - Arp5p [Cytoskele 95.25
PRK10331470 L-fuculokinase; Provisional 95.24
KOG2517516 consensus Ribulose kinase and related carbohydrate 95.24
TIGR00744318 ROK_glcA_fam ROK family protein (putative glucokin 95.12
TIGR01314505 gntK_FGGY gluconate kinase, FGGY type. Gluconate i 95.07
PLN02295512 glycerol kinase 94.91
TIGR02627454 rhamnulo_kin rhamnulokinase. This model describes 94.88
PF13941457 MutL: MutL protein 94.82
PRK10939520 autoinducer-2 (AI-2) kinase; Provisional 94.66
PRK13321256 pantothenate kinase; Reviewed 94.39
PRK10640471 rhaB rhamnulokinase; Provisional 94.39
KOG2531545 consensus Sugar (pentulose and hexulose) kinases [ 94.28
PF14450120 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B 93.97
PRK13318258 pantothenate kinase; Reviewed 93.67
PF02541285 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: I 93.46
COG1070502 XylB Sugar (pentulose and hexulose) kinases [Carbo 93.27
COG3426358 Butyrate kinase [Energy production and conversion] 93.06
PRK09604332 UGMP family protein; Validated 92.93
PRK09585365 anmK anhydro-N-acetylmuramic acid kinase; Reviewed 92.29
PRK05082291 N-acetylmannosamine kinase; Provisional 92.0
PRK03011358 butyrate kinase; Provisional 91.24
COG1548330 Predicted transcriptional regulator/sugar kinase [ 90.71
PRK09557301 fructokinase; Reviewed 90.5
KOG0678415 consensus Actin-related protein Arp2/3 complex, su 89.35
TIGR00329305 gcp_kae1 metallohydrolase, glycoprotease/Kae1 fami 88.96
PRK14878323 UGMP family protein; Provisional 88.81
PF03702364 UPF0075: Uncharacterised protein family (UPF0075); 88.41
PF02543360 CmcH_NodU: Carbamoyltransferase; InterPro: IPR0036 88.06
PF01968290 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPr 87.6
PF07318343 DUF1464: Protein of unknown function (DUF1464); In 87.58
PRK14101 638 bifunctional glucokinase/RpiR family transcription 87.37
PRK09698302 D-allose kinase; Provisional 85.03
COG0554499 GlpK Glycerol kinase [Energy production and conver 84.48
PTZ00340345 O-sialoglycoprotein endopeptidase-like protein; Pr 84.25
COG2377371 Predicted molecular chaperone distantly related to 83.13
PTZ002971452 pantothenate kinase; Provisional 83.12
COG0533342 QRI7 Metal-dependent proteases with possible chape 82.11
COG0145 674 HyuA N-methylhydantoinase A/acetone carboxylase, b 81.18
PLN02920398 pantothenate kinase 1 80.83
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=2.3e-103  Score=740.81  Aligned_cols=488  Identities=78%  Similarity=1.141  Sum_probs=466.4

Q ss_pred             HHHHhhhhhhhhhhhh-hccCCcEEEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEeCCcEEEcHHHHHhHhhC
Q 010228           16 IVFFGGLFAISIAKEE-ATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVN   94 (514)
Q Consensus        16 ~~~~~~~~~~~~~~~~-~~~~~~vvGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~   94 (514)
                      ++||.|.+++....+. .+....+||||+||||||++++++|++++|.|.+|+|.+||+|+|+++++++|++|+++...|
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~gtvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~derLiGdAAKNQ~~~N   94 (663)
T KOG0100|consen   15 VLFFGCSEAASTEKEDEAEKLGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDDERLIGDAAKNQLTSN   94 (663)
T ss_pred             HHHhhhhhhhhhccccchhccceEEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccchhhhhhHhhcccccC
Confidence            3344455554443332 334578999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchhhHhhHhhCCCCCCHHHHhhhccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhCCCCCc
Q 010228           95 PDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKD  174 (514)
Q Consensus        95 ~~~~~~~~k~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~  174 (514)
                      |++++++.||++|+.++++.++++++.+||++++.++++++++....|+.+.++|+++++++|..+++.|+.+++..+.+
T Consensus        95 PenTiFD~KRLIGr~~~d~~vq~Dik~~Pfkvv~k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~  174 (663)
T KOG0100|consen   95 PENTIFDAKRLIGRKFNDKSVQKDIKFLPFKVVNKDGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTH  174 (663)
T ss_pred             cccceechHHHhCcccCChhhhhhhhcCceEEEcCCCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence            99999999999999999999999999999999999999999999966888999999999999999999999999999999


Q ss_pred             EEEEcCCCCCHHHHHHHHHHHHHcCCceeEeechhhHHHHhhhhccCCCceeEEEEEcCCCeeEEEEEEEeCCEEEEEEe
Q 010228          175 AVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLST  254 (514)
Q Consensus       175 vviTVPa~~~~~qr~~l~~a~~~aGl~~~~li~Ep~Aaal~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~  254 (514)
                      .|+||||||++.||+++++|...||+.++++|+||+|||++|+++......++||||+||||||+|++.++++.++++++
T Consensus       175 AVvTvPAYFNDAQrQATKDAGtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeVlaT  254 (663)
T KOG0100|consen  175 AVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEVLAT  254 (663)
T ss_pred             eEEecchhcchHHHhhhcccceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEEEec
Confidence            99999999999999999999999999999999999999999999998889999999999999999999999999999999


Q ss_pred             cCCCCCchHHHHHHHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCceEEEEEecccCCceeEEeeeHHHH
Q 010228          255 NGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARF  334 (514)
Q Consensus       255 ~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~  334 (514)
                      .|+.++||++||+++++|+...++++++.+++.+.+++.+|+++||++|+.||++.+..+.++++++|.|++-++||..|
T Consensus       255 nGDThLGGEDFD~rvm~~fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~DfSEtLtRAkF  334 (663)
T KOG0100|consen  255 NGDTHLGGEDFDQRVMEYFIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDGVDFSETLTRAKF  334 (663)
T ss_pred             CCCcccCccchHHHHHHHHHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeeccccccccchhhhhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcC
Q 010228          335 EELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSG  414 (514)
Q Consensus       335 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~  414 (514)
                      |++..+++...+.+++++|+++++++.+|+.|+||||++|+|.+|++|+++|.++++....||++|||+|||.+|..+++
T Consensus       335 EElNmDLFr~TlkPv~kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsG  414 (663)
T KOG0100|consen  335 EELNMDLFRKTLKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSG  414 (663)
T ss_pred             HHhhhHHHHHhhHHHHHHHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcceEEEecccceeeEEEeCCEEEEeeeCCCccCceEEEEEEeecCCceeEEEEEeccCcc-ccccccccceece
Q 010228          415 EGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVKGVSQR-IADCLGNSIFLEF  493 (514)
Q Consensus       415 ~~~~~~~~~~~~~~~~~s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~~~q~~~~i~iy~g~~~-~~~~~~~~~~~~~  493 (514)
                      ...  ..++++.|++|+++||++.+|.|..+||||+.||++++..|++..|+|..+.|.+|||++. +++|.    .||-
T Consensus       415 ee~--t~divLLDv~pLtlGIETvGGVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~----lLGk  488 (663)
T KOG0100|consen  415 EED--TGDIVLLDVNPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNH----LLGK  488 (663)
T ss_pred             ccC--cCcEEEEeeccccceeeeecceeeccccCCcccCccccceeeecccCCceEEEEEeecccccccccc----cccc
Confidence            754  7799999999999999999999999999999999999999999999999999999999999 88883    7999


Q ss_pred             EEecCCCcCccccccc
Q 010228          494 LQLLGEPLKLKSHLKL  509 (514)
Q Consensus       494 ~~~~~~~~~~~~~~~~  509 (514)
                      |++.||||++|+.|.+
T Consensus       489 FdltGipPAPRGvpqI  504 (663)
T KOG0100|consen  489 FDLTGIPPAPRGVPQI  504 (663)
T ss_pred             ccccCCCCCCCCCccE
Confidence            9999999999998865

>PTZ00186 heat shock 70 kDa precursor protein; Provisional Back     alignment and domain information
>PTZ00009 heat shock 70 kDa protein; Provisional Back     alignment and domain information
>PTZ00400 DnaK-type molecular chaperone; Provisional Back     alignment and domain information
>PRK13411 molecular chaperone DnaK; Provisional Back     alignment and domain information
>PRK13410 molecular chaperone DnaK; Provisional Back     alignment and domain information
>PLN03184 chloroplast Hsp70; Provisional Back     alignment and domain information
>PRK00290 dnaK molecular chaperone DnaK; Provisional Back     alignment and domain information
>TIGR01991 HscA Fe-S protein assembly chaperone HscA Back     alignment and domain information
>TIGR02350 prok_dnaK chaperone protein DnaK Back     alignment and domain information
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>CHL00094 dnaK heat shock protein 70 Back     alignment and domain information
>PRK05183 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins Back     alignment and domain information
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK01433 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK11678 putative chaperone; Provisional Back     alignment and domain information
>PRK13928 rod shape-determining protein Mbl; Provisional Back     alignment and domain information
>PRK13929 rod-share determining protein MreBH; Provisional Back     alignment and domain information
>PRK13927 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family Back     alignment and domain information
>PRK13930 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes Back     alignment and domain information
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein Back     alignment and domain information
>PRK15080 ethanolamine utilization protein EutJ; Provisional Back     alignment and domain information
>TIGR01174 ftsA cell division protein FtsA Back     alignment and domain information
>PRK09472 ftsA cell division protein FtsA; Reviewed Back     alignment and domain information
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] Back     alignment and domain information
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton Back     alignment and domain information
>smart00268 ACTIN Actin Back     alignment and domain information
>PTZ00280 Actin-related protein 3; Provisional Back     alignment and domain information
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13917 plasmid segregation protein ParM; Provisional Back     alignment and domain information
>PTZ00004 actin-2; Provisional Back     alignment and domain information
>PTZ00452 actin; Provisional Back     alignment and domain information
>PTZ00281 actin; Provisional Back     alignment and domain information
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton Back     alignment and domain information
>TIGR01175 pilM type IV pilus assembly protein PilM Back     alignment and domain information
>TIGR03739 PRTRC_D PRTRC system protein D Back     alignment and domain information
>PTZ00466 actin-like protein; Provisional Back     alignment and domain information
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A Back     alignment and domain information
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA [] Back     alignment and domain information
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton] Back     alignment and domain information
>COG5277 Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative Back     alignment and domain information
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit Back     alignment and domain information
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15 Back     alignment and domain information
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional Back     alignment and domain information
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D Back     alignment and domain information
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A Back     alignment and domain information
>KOG0676 consensus Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function Back     alignment and domain information
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton] Back     alignment and domain information
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism] Back     alignment and domain information
>PRK13317 pantothenate kinase; Provisional Back     alignment and domain information
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ] Back     alignment and domain information
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown] Back     alignment and domain information
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton] Back     alignment and domain information
>KOG0797 consensus Actin-related protein [Cytoskeleton] Back     alignment and domain information
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type Back     alignment and domain information
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis Back     alignment and domain information
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon Back     alignment and domain information
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related Back     alignment and domain information
>smart00842 FtsA Cell division protein FtsA Back     alignment and domain information
>COG1069 AraB Ribulose kinase [Energy production and conversion] Back     alignment and domain information
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional Back     alignment and domain information
>PRK10854 exopolyphosphatase; Provisional Back     alignment and domain information
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton] Back     alignment and domain information
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase Back     alignment and domain information
>PRK15027 xylulokinase; Provisional Back     alignment and domain information
>PLN02669 xylulokinase Back     alignment and domain information
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR03706 exo_poly_only exopolyphosphatase Back     alignment and domain information
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T Back     alignment and domain information
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR01312 XylB D-xylulose kinase Back     alignment and domain information
>PTZ00294 glycerol kinase-like protein; Provisional Back     alignment and domain information
>PRK00047 glpK glycerol kinase; Provisional Back     alignment and domain information
>TIGR01311 glycerol_kin glycerol kinase Back     alignment and domain information
>PRK04123 ribulokinase; Provisional Back     alignment and domain information
>TIGR02628 fuculo_kin_coli L-fuculokinase Back     alignment and domain information
>TIGR01234 L-ribulokinase L-ribulokinase Back     alignment and domain information
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton] Back     alignment and domain information
>PRK10331 L-fuculokinase; Provisional Back     alignment and domain information
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase) Back     alignment and domain information
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type Back     alignment and domain information
>PLN02295 glycerol kinase Back     alignment and domain information
>TIGR02627 rhamnulo_kin rhamnulokinase Back     alignment and domain information
>PF13941 MutL: MutL protein Back     alignment and domain information
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional Back     alignment and domain information
>PRK13321 pantothenate kinase; Reviewed Back     alignment and domain information
>PRK10640 rhaB rhamnulokinase; Provisional Back     alignment and domain information
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T Back     alignment and domain information
>PRK13318 pantothenate kinase; Reviewed Back     alignment and domain information
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3 Back     alignment and domain information
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG3426 Butyrate kinase [Energy production and conversion] Back     alignment and domain information
>PRK09604 UGMP family protein; Validated Back     alignment and domain information
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed Back     alignment and domain information
>PRK05082 N-acetylmannosamine kinase; Provisional Back     alignment and domain information
>PRK03011 butyrate kinase; Provisional Back     alignment and domain information
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK09557 fructokinase; Reviewed Back     alignment and domain information
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton] Back     alignment and domain information
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family Back     alignment and domain information
>PRK14878 UGMP family protein; Provisional Back     alignment and domain information
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P Back     alignment and domain information
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors [] Back     alignment and domain information
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3 Back     alignment and domain information
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length Back     alignment and domain information
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional Back     alignment and domain information
>PRK09698 D-allose kinase; Provisional Back     alignment and domain information
>COG0554 GlpK Glycerol kinase [Energy production and conversion] Back     alignment and domain information
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional Back     alignment and domain information
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00297 pantothenate kinase; Provisional Back     alignment and domain information
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PLN02920 pantothenate kinase 1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query514
3c7n_B554 Structure Of The Hsp110:hsc70 Nucleotide Exchange C 1e-167
1yuw_A554 Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214 1e-166
2v7z_A543 Crystal Structure Of The 70-Kda Heat Shock Cognate 1e-165
3iuc_A408 Crystal Structure Of The Human 70kda Heat Shock Pro 1e-158
3ldl_A384 Crystal Structure Of Human Grp78 (70kda Heat Shock 1e-158
2qw9_B394 Crystal Structure Of Bovine Hsc70 (1-394aa)in The A 1e-147
2qwn_A394 Crystal Structure Of Disulfide-Bond-Crosslinked Com 1e-146
1hpm_A386 How Potassium Affects The Activity Of The Molecular 1e-145
1ngb_A386 Structural Basis Of The 70-Kilodalton Heat Shock Co 1e-144
1bup_A386 T13s Mutant Of Bovine 70 Kilodalton Heat Shock Prot 1e-144
1nga_A386 Structural Basis Of The 70-Kilodalton Heat Shock Co 1e-144
1ngd_A386 Structural Basis Of The 70-kilodalton Heat Shock Co 1e-144
1ngf_A386 Structural Basis Of The 70-Kilodalton Heat Shock Co 1e-144
1ngh_A386 Structural Basis Of The 70-Kilodalton Heat Shock Co 1e-144
1ngg_A386 Structural Basis Of The 70-Kilodalton Heat Shock Co 1e-144
1ngc_A386 Structural Basis Of The 70-Kilodalton Heat Shock Co 1e-144
1nge_A386 Structural Basis Of The 70-Kilodalton Heat Shock Co 1e-144
1atr_A386 Threonine 204 Of The Chaperone Protein Hsc70 Influe 1e-144
1ats_A386 Threonine 204 Of The Chaperone Protein Hsc70 Influe 1e-144
1ba0_A386 Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi 1e-144
1hx1_A400 Crystal Structure Of A Bag Domain In Complex With T 1e-144
3cqx_A386 Chaperone Complex Length = 386 1e-144
3fzf_A381 Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP 1e-143
3i33_A404 Crystal Structure Of The Human 70kda Heat Shock Pro 1e-143
3qfp_A390 Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE D 1e-143
1kaz_A381 70kd Heat Shock Cognate Protein Atpase Domain, K71e 1e-143
3qfu_A394 Crystal Structure Of Yeast Hsp70 (BipKAR2) COMPLEXE 1e-143
1kay_A381 70kd Heat Shock Cognate Protein Atpase Domain, K71a 1e-143
1ba1_A386 Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi 1e-143
1kax_A381 70kd Heat Shock Cognate Protein Atpase Domain, K71m 1e-143
2bup_A381 T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 1e-143
1qqo_A378 E175s Mutant Of Bovine 70 Kilodalton Heat Shock Pro 1e-142
3gdq_A408 Crystal Structure Of The Human 70kda Heat Shock Pro 1e-142
1qqm_A378 D199s Mutant Of Bovine 70 Kilodalton Heat Shock Pro 1e-142
1qqn_A378 D206s Mutant Of Bovine 70 Kilodalton Heat Shock Pro 1e-141
3jxu_A409 Crystal Structure Of The Human 70kda Heat Shock Pro 1e-141
4fsv_A387 Crystal Structure Of A Heat Shock 70kda Protein 2 ( 1e-141
3fe1_A403 Crystal Structure Of The Human 70kda Heat Shock Pro 1e-141
2e8a_A391 Crystal Structure Of The Human Hsp70 Atpase Domain 1e-141
2e88_A391 Crystal Structure Of The Human Hsp70 Atpase Domain 1e-141
3a8y_A392 Crystal Structure Of The Complex Between The Bag5 B 1e-141
1hjo_A380 Atpase Domain Of Human Heat Shock 70kda Protein 1 L 1e-140
3d2f_B382 Crystal Structure Of A Complex Of Sse1p And Hsp70 L 1e-140
1s3x_A382 The Crystal Structure Of The Human Hsp70 Atpase Dom 1e-140
3d2e_B382 Crystal Structure Of A Complex Of Sse1p And Hsp70, 1e-138
3kvg_A400 Crystal Structure Of The N-Terminal Domain Of Hsp70 1e-133
3gl1_A387 Crystal Structure Of Atpase Domain Of Ssb1 Chaperon 1e-132
2kho_A 605 Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAP 1e-121
4b9q_A 605 Open Conformation Of Atp-Bound Hsp70 Homolog Dnak L 1e-117
2v7y_A509 Crystal Structure Of The Molecular Chaperone Dnak F 1e-114
1dkg_D383 Crystal Structure Of The Nucleotide Exchange Factor 4e-97
1xqs_C191 Crystal Structure Of The Hspbp1 Core Domain Complex 4e-56
3d2f_A 675 Crystal Structure Of A Complex Of Sse1p And Hsp70 L 9e-52
3c7n_A 668 Structure Of The Hsp110:hsc70 Nucleotide Exchange C 9e-52
2qxl_A 658 Crystal Structure Analysis Of Sse1, A Yeast Hsp110 3e-51
3d2e_A 675 Crystal Structure Of A Complex Of Sse1p And Hsp70, 7e-50
4gni_A409 Structure Of The Ssz1 Atpase Bound To Atp And Magne 1e-34
1bpr_A191 Nmr Structure Of The Substrate Binding Domain Of Dn 2e-16
1dky_A 219 The Substrate Binding Domain Of Dnak In Complex Wit 7e-16
3dpo_A 219 Crystal Structure Of The Substrate Binding Domain O 2e-15
1dkx_A 219 The Substrate Binding Domain Of Dnak In Complex Wit 2e-15
1ckr_A159 High Resolution Solution Structure Of The Heat Shoc 1e-14
2op6_A152 Peptide-Binding Domain Of Heat Shock 70 Kda Protein 3e-14
1q5l_A135 Nmr Structure Of The Substrate Binding Domain Of Dn 2e-13
3n8e_A182 Substrate Binding Domain Of The Human Heat Shock 70 3e-13
3dqg_A151 Peptide-Binding Domain Of Heat Shock 70 Kda Protein 4e-13
1dg4_A115 Nmr Structure Of The Substrate Binding Domain Of Dn 5e-13
3dob_A152 Peptide-Binding Domain Of Heat Shock 70 Kda Protein 1e-12
1u00_A 227 Hsca Substrate Binding Domain Complexed With The Is 3e-12
3h0x_A152 Crystal Structure Of Peptide-Binding Domain Of Kar2 2e-11
1jcf_A344 Mreb From Thermotoga Maritima, Trigonal Length = 34 3e-07
1jce_A344 Mreb From Thermotoga Maritima Length = 344 1e-06
>pdb|3C7N|B Chain B, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 554 Back     alignment and structure 
Iteration: 1

 Score =  584 bits (1506), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 286/440 (65%), Positives = 344/440 (78%), Gaps = 2/440 (0%)
Query: 36  GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNP 95
           G  +GIDLGTTYSCVGV+++G VEIIANDQGNR TPS+VAFTD+ERLIG+AAKNQ A+NP
Sbjct: 4   GPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP 63
Query: 96  DRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAM 155
             T+FD KRLIGR+F+D  VQ DMK  P+ +VN  G+P +QV+ + GETK F PEE+S+M
Sbjct: 64  TNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYK-GETKSFYPEEVSSM 122
Query: 156 ILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIA 215
           +LTKMKE AEA+LGK + +AVVTVPAYFND+QRQATKDAG IAGLNV RIINEPTAAAIA
Sbjct: 123 VLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIA 182
Query: 216 YGLDKK-GGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFX 274
           YGLDKK G E+N+L+FDLGGGTFDVSILTI++G+FEV ST GDTHLGGEDFD R++ +F 
Sbjct: 183 YGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFI 242
Query: 275 XXXXXXXXXXXXXXXRAIGXXXXXXXXXXXXXXXQHQVRVEIESLFDGIDFSEPLTRARF 334
                          RA+                  Q  +EI+SL++GIDF   +TRARF
Sbjct: 243 AEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARF 302
Query: 335 EELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKG 394
           EELN DLFR T+ PV+KA+ DA L+K+QI +IVLVGGSTRIPK+Q+LL+D+F+GKE NK 
Sbjct: 303 EELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKS 362
Query: 395 VNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPT 454
           +NPDEAVAYGAAVQ  ILSG+  +  +D+LLLDV PL+LGIET GGVMT LI RNT IPT
Sbjct: 363 INPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPT 422
Query: 455 KKSQVFTTYQDQQTTVSIQV 474
           K++Q FTTY D Q  V IQV
Sbjct: 423 KQTQTFTTYSDNQPGVLIQV 442
>pdb|1YUW|A Chain A, Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214A MUTANT Length = 554 Back     alignment and structure
>pdb|2V7Z|A Chain A, Crystal Structure Of The 70-Kda Heat Shock Cognate Protein From Rattus Norvegicus In Post-Atp Hydrolysis State Length = 543 Back     alignment and structure
>pdb|3IUC|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 5 (BipGRP78) ATPASE DOMAIN IN COMPLEX WITH ADP Length = 408 Back     alignment and structure
>pdb|3LDL|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein 5 BIP) Atpase Domain In Complex With Atp Length = 384 Back     alignment and structure
>pdb|2QWN|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin (810-910aa)d876c In The AdpPi State Length = 394 Back     alignment and structure
>pdb|1HPM|A Chain A, How Potassium Affects The Activity Of The Molecular Chaperone Hsc70. Ii. Potassium Binds Specifically In The Atpase Active Site Length = 386 Back     alignment and structure
>pdb|1NGB|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 Back     alignment and structure
>pdb|1BUP|A Chain A, T13s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 386 Back     alignment and structure
>pdb|1NGA|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 Back     alignment and structure
>pdb|1NGD|A Chain A, Structural Basis Of The 70-kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 Back     alignment and structure
>pdb|1NGF|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 Back     alignment and structure
>pdb|1NGH|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 Back     alignment and structure
>pdb|1NGG|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 Back     alignment and structure
>pdb|1NGC|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 Back     alignment and structure
>pdb|1NGE|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 Back     alignment and structure
>pdb|1ATR|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386 Back     alignment and structure
>pdb|1ATS|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386 Back     alignment and structure
>pdb|1BA0|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal 1nge 3 Length = 386 Back     alignment and structure
>pdb|1HX1|A Chain A, Crystal Structure Of A Bag Domain In Complex With The Hsc70 Atpase Domain Length = 400 Back     alignment and structure
>pdb|3CQX|A Chain A, Chaperone Complex Length = 386 Back     alignment and structure
>pdb|3FZF|A Chain A, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP Length = 381 Back     alignment and structure
>pdb|3I33|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 2 (Hsp70-2) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 404 Back     alignment and structure
>pdb|3QFP|A Chain A, Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE DOMAIN Length = 390 Back     alignment and structure
>pdb|1KAZ|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71e Mutant Length = 381 Back     alignment and structure
>pdb|1KAY|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71a Mutant Length = 381 Back     alignment and structure
>pdb|1BA1|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal Mutant With Cys 17 Replaced By Lys Length = 386 Back     alignment and structure
>pdb|1KAX|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71m Mutant Length = 381 Back     alignment and structure
>pdb|2BUP|A Chain A, T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 Length = 381 Back     alignment and structure
>pdb|1QQO|A Chain A, E175s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 Back     alignment and structure
>pdb|3GDQ|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1-Like Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 408 Back     alignment and structure
>pdb|1QQM|A Chain A, D199s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 Back     alignment and structure
>pdb|1QQN|A Chain A, D206s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 Back     alignment and structure
>pdb|3JXU|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1a (Hsp70-1) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 409 Back     alignment and structure
>pdb|4FSV|A Chain A, Crystal Structure Of A Heat Shock 70kda Protein 2 (Hspa2) From Homo Sapiens At 1.80 A Resolution Length = 387 Back     alignment and structure
>pdb|3FE1|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 6 (Hsp70b') Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 403 Back     alignment and structure
>pdb|2E8A|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In Complex With Amp-Pnp Length = 391 Back     alignment and structure
>pdb|2E88|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In The Apo Form Length = 391 Back     alignment and structure
>pdb|3A8Y|A Chain A, Crystal Structure Of The Complex Between The Bag5 Bd5 And Hsp70 Nbd Length = 392 Back     alignment and structure
>pdb|1HJO|A Chain A, Atpase Domain Of Human Heat Shock 70kda Protein 1 Length = 380 Back     alignment and structure
>pdb|3D2F|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 382 Back     alignment and structure
>pdb|1S3X|A Chain A, The Crystal Structure Of The Human Hsp70 Atpase Domain Length = 382 Back     alignment and structure
>pdb|3D2E|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 382 Back     alignment and structure
>pdb|3KVG|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hsp70 (Cgd2_20) From Cryptosporidium Parvum In Complex With Amppnp Length = 400 Back     alignment and structure
>pdb|3GL1|A Chain A, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A Member Of The Hsp70 Family, From Saccharomyces Cerevisiae Length = 387 Back     alignment and structure
>pdb|2KHO|A Chain A, Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAPERONE (1-605) Complexed With Adp And Substrate Length = 605 Back     alignment and structure
>pdb|4B9Q|A Chain A, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak Length = 605 Back     alignment and structure
>pdb|2V7Y|A Chain A, Crystal Structure Of The Molecular Chaperone Dnak From Geobacillus Kaustophilus Hta426 In Post-Atp Hydrolysis State Length = 509 Back     alignment and structure
>pdb|1DKG|D Chain D, Crystal Structure Of The Nucleotide Exchange Factor Grpe Bound To The Atpase Domain Of The Molecular Chaperone Dnak Length = 383 Back     alignment and structure
>pdb|1XQS|C Chain C, Crystal Structure Of The Hspbp1 Core Domain Complexed With The Fragment Of Hsp70 Atpase Domain Length = 191 Back     alignment and structure
>pdb|3D2F|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 675 Back     alignment and structure
>pdb|3C7N|A Chain A, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 668 Back     alignment and structure
>pdb|2QXL|A Chain A, Crystal Structure Analysis Of Sse1, A Yeast Hsp110 Length = 658 Back     alignment and structure
>pdb|3D2E|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 675 Back     alignment and structure
>pdb|4GNI|A Chain A, Structure Of The Ssz1 Atpase Bound To Atp And Magnesium Length = 409 Back     alignment and structure
>pdb|1BPR|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak, Minimized Average Structure Length = 191 Back     alignment and structure
>pdb|1DKY|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A Substrate Peptide, Determined From Type 2 Native Crystals Length = 219 Back     alignment and structure
>pdb|3DPO|A Chain A, Crystal Structure Of The Substrate Binding Domain Of E. Coli Dnak In Complex With A Short Pyrrhocoricin-Derived Inhibitor Peptide Length = 219 Back     alignment and structure
>pdb|1DKX|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A Substrate Peptide, Determined From Type 1 Selenomethionyl Crystals Length = 219 Back     alignment and structure
>pdb|1CKR|A Chain A, High Resolution Solution Structure Of The Heat Shock Cognate-70 Kd Substrate Binding Domain Obtained By Multidimensional Nmr Techniques Length = 159 Back     alignment and structure
>pdb|2OP6|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein D Precursor From C.Elegans Length = 152 Back     alignment and structure
>pdb|1Q5L|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak Bound To The Peptide Nrllltg Length = 135 Back     alignment and structure
>pdb|3N8E|A Chain A, Substrate Binding Domain Of The Human Heat Shock 70kda Prote (Mortalin) Length = 182 Back     alignment and structure
>pdb|3DQG|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein F, Mitochondrial Precursor, From Caenorhabditis Elegans. Length = 151 Back     alignment and structure
>pdb|1DG4|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak In The Apo Form Length = 115 Back     alignment and structure
>pdb|3DOB|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein F44e5.5 From C.Elegans. Length = 152 Back     alignment and structure
>pdb|1U00|A Chain A, Hsca Substrate Binding Domain Complexed With The Iscu Recognition Peptide Elppvkihc Length = 227 Back     alignment and structure
>pdb|3H0X|A Chain A, Crystal Structure Of Peptide-Binding Domain Of Kar2 Protein From Saccharomyces Cerevisiae Length = 152 Back     alignment and structure
>pdb|1JCF|A Chain A, Mreb From Thermotoga Maritima, Trigonal Length = 344 Back     alignment and structure
>pdb|1JCE|A Chain A, Mreb From Thermotoga Maritima Length = 344 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query514
1yuw_A554 Heat shock cognate 71 kDa protein; chaperone; 2.60 0.0
3qfu_A394 78 kDa glucose-regulated protein homolog; HSP70, K 0.0
3d2f_A 675 Heat shock protein homolog SSE1; nucleotide exchan 0.0
3i33_A404 Heat shock-related 70 kDa protein 2; protein-ADP c 0.0
2kho_A 605 Heat shock protein 70; molecular chaperone, HSP70, 0.0
2v7y_A509 Chaperone protein DNAK; HSP70, heat shock protein, 0.0
1dkg_D383 Molecular chaperone DNAK; HSP70, GRPE, nucleotide 0.0
3h1q_A272 Ethanolamine utilization protein EUTJ; ethanolamin 3e-39
3n8e_A182 Stress-70 protein, mitochondrial; beta-sandwich, h 1e-30
1q5l_A135 Chaperone protein DNAK; HSP70, chaperone, heat sho 8e-30
3dob_A152 Heat shock 70 kDa protein F44E5.5; structural geno 4e-28
3h0x_A152 78 kDa glucose-regulated protein homolog; structur 4e-28
2op6_A152 Heat shock 70 kDa protein D; HSP70/peptide-binding 4e-28
2zgy_A320 Plasmid segregation protein PARM; plasmid partitio 2e-26
4e81_A 219 Chaperone protein DNAK; chaperone; 1.90A {Escheric 1e-25
2fsj_A346 Hypothetical protein TA0583; actin homologs, archa 2e-25
1u00_A 227 HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A 9e-25
3dqg_A151 Heat shock 70 kDa protein F; structural genomics, 5e-23
4apw_A329 ALP12; actin-like protein; 19.70A {Clostridium tet 3e-16
3js6_A355 Uncharacterized PARM protein; partition, segregati 6e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
2ych_A377 Competence protein PILM; cell cycle, type IV pilus 8e-09
1jce_A344 ROD shape-determining protein MREB; MBL, actin, HS 3e-07
3i8b_A515 Xylulose kinase; strain ATCC 15703 / DSM 20083, 11 8e-06
2itm_A484 Xylulose kinase, xylulokinase; ATPase, FGGY kinase 6e-04
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Length = 554 Back     alignment and structure
 Score =  934 bits (2416), Expect = 0.0
 Identities = 305/440 (69%), Positives = 365/440 (82%), Gaps = 2/440 (0%)

Query: 36  GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNP 95
           G  +GIDLGTTYSCVGV+++G VEIIANDQGNR TPS+VAFTD+ERLIG+AAKNQ A+NP
Sbjct: 4   GPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP 63

Query: 96  DRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAM 155
             T+FD KRLIGR+F+D  VQ DMK  P+ +VN  G+P +QV+ + GETK F PEE+S+M
Sbjct: 64  TNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYK-GETKSFYPEEVSSM 122

Query: 156 ILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIA 215
           +LTKMKE AEA+LGK + +AVVTVPAYFND+QRQATKDAG IAGLNV RIINEPTAAAIA
Sbjct: 123 VLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIA 182

Query: 216 YGLDKK-GGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFI 274
           YGLDKK G E+N+L+FDLGGGTFDVSILTI  G+FEV ST GDTHLGGEDFD R++ +FI
Sbjct: 183 YGLDKKVGAERNVLIFDLGGGTFDVSILTIAAGIFEVKSTAGDTHLGGEDFDNRMVNHFI 242

Query: 275 KLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARF 334
              K+KH KDIS++KRA+ +LR   ERAKR LSS  Q  +EI+SL++GIDF   +TRARF
Sbjct: 243 AEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARF 302

Query: 335 EELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKG 394
           EELN DLFR T+ PV+KA+ DA L+K+QI +IVLVGGSTRIPK+Q+LL+D+F+GKE NK 
Sbjct: 303 EELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKS 362

Query: 395 VNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPT 454
           +NPDEAVAYGAAVQ  ILSG+  +  +D+LLLDV PL+LGIET GGVMT LI RNT IPT
Sbjct: 363 INPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPT 422

Query: 455 KKSQVFTTYQDQQTTVSIQV 474
           K++Q FTTY D Q  V IQV
Sbjct: 423 KQTQTFTTYSDNQPGVLIQV 442
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Length = 675 Back     alignment and structure
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ... Length = 404 Back     alignment and structure
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Length = 605 Back     alignment and structure
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Length = 509 Back     alignment and structure
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Length = 383 Back     alignment and structure
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Length = 272 Back     alignment and structure
>3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens} Length = 182 Back     alignment and structure
>1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1 Length = 135 Back     alignment and structure
>3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans} Length = 152 Back     alignment and structure
>3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A Length = 152 Back     alignment and structure
>2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans} Length = 152 Back     alignment and structure
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A Length = 320 Back     alignment and structure
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A Length = 219 Back     alignment and structure
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Length = 346 Back     alignment and structure
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1 Length = 227 Back     alignment and structure
>3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans} Length = 151 Back     alignment and structure
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} Length = 329 Back     alignment and structure
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} Length = 355 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Length = 377 Back     alignment and structure
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A Length = 344 Back     alignment and structure
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} Length = 515 Back     alignment and structure
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A Length = 484 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query514
1yuw_A554 Heat shock cognate 71 kDa protein; chaperone; 2.60 100.0
4b9q_A 605 Chaperone protein DNAK; HET: ATP; 2.40A {Escherich 100.0
3d2f_A 675 Heat shock protein homolog SSE1; nucleotide exchan 100.0
2kho_A 605 Heat shock protein 70; molecular chaperone, HSP70, 100.0
2v7y_A509 Chaperone protein DNAK; HSP70, heat shock protein, 100.0
3i33_A404 Heat shock-related 70 kDa protein 2; protein-ADP c 100.0
3qfu_A394 78 kDa glucose-regulated protein homolog; HSP70, K 100.0
4gni_A409 Putative heat shock protein; HSP70-type ATPase, AT 100.0
1dkg_D383 Molecular chaperone DNAK; HSP70, GRPE, nucleotide 100.0
1jce_A344 ROD shape-determining protein MREB; MBL, actin, HS 100.0
2ych_A377 Competence protein PILM; cell cycle, type IV pilus 99.95
2fsj_A346 Hypothetical protein TA0583; actin homologs, archa 99.95
3h1q_A272 Ethanolamine utilization protein EUTJ; ethanolamin 99.95
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 99.94
4a2a_A419 Cell division protein FTSA, putative; cell cycle, 99.94
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 99.94
2zgy_A320 Plasmid segregation protein PARM; plasmid partitio 99.89
1k8k_B394 ARP2, actin-like protein 2; beta-propeller, struct 99.84
4ehu_A276 Activator of 2-hydroxyisocaproyl-COA dehydratase; 99.78
3js6_A355 Uncharacterized PARM protein; partition, segregati 99.75
4apw_A329 ALP12; actin-like protein; 19.70A {Clostridium tet 99.69
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 99.67
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 99.66
3dob_A152 Heat shock 70 kDa protein F44E5.5; structural geno 99.47
3dqg_A151 Heat shock 70 kDa protein F; structural genomics, 99.47
3h0x_A152 78 kDa glucose-regulated protein homolog; structur 99.45
4fo0_A593 Actin-related protein 8; chromatin remodeling, nuc 99.44
4e81_A 219 Chaperone protein DNAK; chaperone; 1.90A {Escheric 99.43
3n8e_A182 Stress-70 protein, mitochondrial; beta-sandwich, h 99.42
1q5l_A135 Chaperone protein DNAK; HSP70, chaperone, heat sho 99.39
2d0o_A610 DIOL dehydratase-reactivating factor large subunit 99.38
1nbw_A607 Glycerol dehydratase reactivase alpha subunit; mol 99.36
2op6_A152 Heat shock 70 kDa protein D; HSP70/peptide-binding 99.36
1u00_A 227 HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A 99.23
1hux_A270 Activator of (R)-2-hydroxyglutaryl-COA dehydratase 99.02
2ews_A287 Pantothenate kinase; PANK, structural genomics, st 98.43
4am6_A 655 Actin-like protein ARP8; nuclear protein, chromati 98.19
1t6c_A315 Exopolyphosphatase; alpha/beta protein, actin-like 97.45
2i7n_A360 Pantothenate kinase 1; PANK, transferase; HET: ACO 97.22
3vgl_A321 Glucokinase; ROK family, transferase; HET: BGC ANP 97.03
4db3_A327 Glcnac kinase, N-acetyl-D-glucosamine kinase; stru 96.97
3eno_A334 Putative O-sialoglycoprotein endopeptidase; hydrol 96.91
2ivn_A330 O-sialoglycoprotein endopeptidase; UP1 keops compl 96.88
3r8e_A321 Hypothetical sugar kinase; ribonuclease H-like mot 96.85
2e2o_A299 Hexokinase; acetate and sugar kinases, HSP70, acti 96.78
3cer_A343 Possible exopolyphosphatase-like protein; NESG, BL 96.74
3vov_A302 Glucokinase, hexokinase; ROK, sugar kinase, transf 96.68
2ch5_A347 NAGK protein; transferase, N-acetylglucosamine, gl 96.64
2gup_A292 ROK family protein; sugar kinase, streptococcus pn 96.5
4htl_A297 Beta-glucoside kinase; structural genomics, sugar 96.38
3mdq_A315 Exopolyphosphatase; structural genomics, joint cen 96.38
2itm_A484 Xylulose kinase, xylulokinase; ATPase, FGGY kinase 96.22
2qm1_A326 Glucokinase; alpha-beta structure, putative helix- 96.17
3l0q_A554 Xylulose kinase; xlylulose kinase, SGX, PSI, struc 96.16
4bc3_A538 Xylulose kinase; transferase, glucuronate xyluloki 96.16
2zf5_O497 Glycerol kinase; hyperthermophilic archaeon, ATP-b 96.05
3hz6_A511 Xylulokinase; xylulose, structural genomic, chromo 96.05
3ll3_A504 Gluconate kinase; xylulose kinase, nysgx, ATP, ADP 95.91
3i8b_A515 Xylulose kinase; strain ATCC 15703 / DSM 20083, 11 95.91
1u6z_A513 Exopolyphosphatase; alpha/beta protein, askha (ace 95.89
2dpn_A495 Glycerol kinase; thermus thermophilus HB8, structu 95.47
3g25_A501 Glycerol kinase; IDP00743, ATP-binding, glycerol m 95.46
2ap1_A327 Putative regulator protein; zinc binding protein, 95.43
2hoe_A380 N-acetylglucosamine kinase; TM1224, structural gen 95.42
3ifr_A508 Carbohydrate kinase, FGGY; xylulose kinase, SGX, s 95.4
3jvp_A572 Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, su 95.37
4e1j_A520 Glycerol kinase; structural genomics, PSI-biology, 95.36
1z6r_A406 MLC protein; transcriptional repressor, ROK family 95.3
3h3n_X506 Glycerol kinase; ATP-binding, glycerol metabolism, 95.29
2p3r_A510 Glycerol kinase; glycerol metabolism, allosteric r 95.24
3ezw_A526 Glycerol kinase; glycerol metabolism, allosteric r 95.18
3en9_A 540 Glycoprotease, O-sialoglycoprotein endopeptidase/p 95.13
3htv_A310 D-allose kinase, allokinase; NP_418508.1, structur 95.08
2d4w_A504 Glycerol kinase; alpha and beta protein, ribonucle 95.02
2w40_A503 Glycerol kinase, putative; closed conformation, ma 94.84
2uyt_A489 Rhamnulokinase; rhamnose degradation, IN-LINE phos 94.5
1z05_A429 Transcriptional regulator, ROK family; structural 94.49
1zbs_A291 Hypothetical protein PG1100; alpha-beta protein., 94.08
3h6e_A482 Carbohydrate kinase, FGGY; novosphingobium aromati 90.94
3bex_A249 Type III pantothenate kinase; actin-like fold, ATP 90.83
3hi0_A508 Putative exopolyphosphatase; 17739545, structural 89.62
1zc6_A305 Probable N-acetylglucosamine kinase; NESG, Q7NU07_ 89.22
3ven_A 576 O-carbamoyltransferase TOBZ; antibiotic biosynthes 89.05
2yhx_A457 Hexokinase B; transferase(phosphoryl,alcohol accep 88.46
3o8m_A485 Hexokinase; rnaseh-like fold, glycolysis, glucose 87.89
3qbx_A371 Anhydro-N-acetylmuramic acid kinase; acetate and s 86.53
3cqy_A370 Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1 82.2
3ezw_A526 Glycerol kinase; glycerol metabolism, allosteric r 80.95
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Back     alignment and structure
Probab=100.00  E-value=1.2e-80  Score=660.61  Aligned_cols=469  Identities=66%  Similarity=1.007  Sum_probs=437.9

Q ss_pred             CcEEEEEcCccceEEEEEECCeEEEEEcCCCCcccceEEEEeCCcEEEcHHHHHhHhhCCCchhhHhhHhhCCCCCCHHH
Q 010228           36 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEV  115 (514)
Q Consensus        36 ~~vvGID~GTt~s~va~~~~g~~~~i~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~  115 (514)
                      +.+||||||||||++|++.+|.++++.+++|++++||+|+|.+++++||..|+.+...+|+++++++|+++|+.++++.+
T Consensus         4 ~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~v   83 (554)
T 1yuw_A            4 GPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVV   83 (554)
T ss_dssp             CCCEEEEECSSEEEEEEECSSSEEECCCTTSCSEEECCEEECSSCEEETHHHHTTTTTCGGGEECCGGGTTTCCSSCSHH
T ss_pred             CCEEEEEeCcccEEEEEEECCEEEEEECCCCCeecceEEEEcCCcEEEcHHHHHhhhhChhhehHhhHHhcCCCCCcHHH
Confidence            46899999999999999999999999999999999999999998999999999999999999999999999999999999


Q ss_pred             HhhhccCCeEEecCCCcceEEEEEeCCceeeeCHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEcCCCCCHHHHHHHHHHH
Q 010228          116 QRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAG  195 (514)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~vviTVPa~~~~~qr~~l~~a~  195 (514)
                      +..++.+||+++..+|.+.+.+.+ .+..+.++|+++++++|+++++.++.+++.++.++|||||++|++.||+++++|+
T Consensus        84 ~~~~~~~p~~v~~~~g~~~~~v~~-~~~~~~~sp~ei~a~~L~~lk~~ae~~lg~~v~~~VitVPa~f~~~qr~a~~~A~  162 (554)
T 1yuw_A           84 QSDMKHWPFMVVNDAGRPKVQVEY-KGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAG  162 (554)
T ss_dssp             HHHHTTCSSEEEEETTEEEEEEEE-TTEEEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEECTTCCHHHHHHHHHHH
T ss_pred             HHHhhcCCeEEEecCCceEEEEEE-CCCceEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence            999999999999778888888887 6667889999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCceeEeechhhHHHHhhhhccCC-CceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHH
Q 010228          196 IIAGLNVARIINEPTAAAIAYGLDKKG-GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFI  274 (514)
Q Consensus       196 ~~aGl~~~~li~Ep~Aaal~~~~~~~~-~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~  274 (514)
                      +.||++++++++||+|||++|+..... .+..++|||+||||+|++++++.++.+++++..++..+||++||++|.+++.
T Consensus       163 ~~AGl~~~~li~EP~AAAlay~~~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d~d~~l~~~l~  242 (554)
T 1yuw_A          163 TIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIAAGIFEVKSTAGDTHLGGEDFDNRMVNHFI  242 (554)
T ss_dssp             HTTTCEEEEEEEHHHHHHHHTTCSTTCSSCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHH
T ss_pred             HHcCCCeEEEeCcHHHHHHHHHhhccCCCCcEEEEEEcCCCeEEEEEEEEcCCcEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999876542 4688999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHhcCCceEEEEEecccCCceeEEeeeHHHHHHHHHHHHhhhhcHHHHHHH
Q 010228          275 KLIKKKHGKDISKDKRAIGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAME  354 (514)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~  354 (514)
                      ++++++++.++..+++.+.+|+.+||++|+.||...+..+.++.+.+|.++...|+|++|+++++++++++.++++++|+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~i~~~~~g~~~~~~ltr~~~e~l~~~~~~~i~~~i~~~L~  322 (554)
T 1yuw_A          243 AEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALR  322 (554)
T ss_dssp             HHHHHHTSCCTTSCHHHHHHHHHHHHHHHHHHTTSSEEEEEETTCSSSCCEEEEEEHHHHHHHTHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHhCCCcccCHHHHHHHHHHHHHHhhhcccCceEEEEEeeccCCceEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998889999999999999999999999999999998888889999999999999999999999999999999


Q ss_pred             HcCCCccCCCeEEEEcCCcCcHHHHHHHHhHcCCCCCCCCCChhhHHHhHHHHHHHHhcCCCCCCCcceEEEecccceee
Q 010228          355 DAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLG  434 (514)
Q Consensus       355 ~~~~~~~~i~~ViLvGG~s~~p~l~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~~~~~~~s~g  434 (514)
                      ++++.+.+++.|+|+||+|++|+|++.|++.|++.++..+.||++|||+|||++|+.+++......+++++.|++|++||
T Consensus       323 ~a~~~~~~i~~VvLvGG~srip~v~~~l~~~f~~~~v~~~~np~~aVA~Gaa~~a~~l~~~~~~~~~~~~~~dv~p~slg  402 (554)
T 1yuw_A          323 DAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLG  402 (554)
T ss_dssp             HTTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCCSCTTTHHHHHHHHHHHHTTSCCCCCTTSSCCCCBCSSCEE
T ss_pred             HcCCChhhCcEEEEECCcccChHHHHHHHHHcCCCccccCCCchhHHHHHHHHHHHHhcCCccccccceEEEEeeeeEEE
Confidence            99999899999999999999999999999999767888889999999999999999988753333567889999999999


Q ss_pred             EEEeCCEEEEeeeCCCccCceEEEEEEeecCCceeEEEEEeccCcc-ccccccccceeceEEecCCCcCccccccc
Q 010228          435 IETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVKGVSQR-IADCLGNSIFLEFLQLLGEPLKLKSHLKL  509 (514)
Q Consensus       435 i~~~~~~~~~li~~~~~iP~~~~~~~~~~~~~q~~~~i~iy~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (514)
                      +++.+|.|.++|+||+++|++++..|++..|+|+.+.|.+|||+.. +.+|    ..|+.+.++|+|+..++.+++
T Consensus       403 i~~~~g~~~~li~r~t~iP~~~~~~f~~~~d~q~~v~i~v~~ge~~~~~~n----~~lg~~~l~~i~~~~~g~~~i  474 (554)
T 1yuw_A          403 IETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDN----NLLGKFELTGIPPAPRGVPQI  474 (554)
T ss_dssp             EEETTTEEEEEECTTCBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGS----EEEEEEEEECCCCCSTTCCCE
T ss_pred             EEecCceEEEEEECCCccCceeEEEeeeccCCCceEEEEEEecCccccccC----cEEEEEEEeCCCCCcccccEE
Confidence            9999999999999999999999999999999999999999999998 6665    368999999999877765543
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D Back     alignment and structure
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Back     alignment and structure
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Back     alignment and structure
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... Back     alignment and structure
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} Back     alignment and structure
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Back     alignment and structure
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A Back     alignment and structure
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Back     alignment and structure
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Back     alignment and structure
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Back     alignment and structure
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Back     alignment and structure
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* Back     alignment and structure
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Back     alignment and structure
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A Back     alignment and structure
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Back     alignment and structure
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A Back     alignment and structure
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} Back     alignment and structure
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} Back     alignment and structure
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans} Back     alignment and structure
>3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans} Back     alignment and structure
>3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A Back     alignment and structure
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens} Back     alignment and structure
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A Back     alignment and structure
>3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens} Back     alignment and structure
>1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1 Back     alignment and structure
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A Back     alignment and structure
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 Back     alignment and structure
>2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1 Back     alignment and structure
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5 Back     alignment and structure
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14 Back     alignment and structure
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A* Back     alignment and structure
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A* Back     alignment and structure
>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A* Back     alignment and structure
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A* Back     alignment and structure
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus} Back     alignment and structure
>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum} Back     alignment and structure
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A* Back     alignment and structure
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii} Back     alignment and structure
>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A* Back     alignment and structure
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705} Back     alignment and structure
>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus} Back     alignment and structure
>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A* Back     alignment and structure
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10 Back     alignment and structure
>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes} Back     alignment and structure
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii} Back     alignment and structure
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A Back     alignment and structure
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis} Back     alignment and structure
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A* Back     alignment and structure
>4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A* Back     alignment and structure
>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis} Back     alignment and structure
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A* Back     alignment and structure
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A* Back     alignment and structure
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} Back     alignment and structure
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A* Back     alignment and structure
>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} Back     alignment and structure
>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A* Back     alignment and structure
>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10 Back     alignment and structure
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 Back     alignment and structure
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum} Back     alignment and structure
>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti} Back     alignment and structure
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A Back     alignment and structure
>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O Back     alignment and structure
>3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y* Back     alignment and structure
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A* Back     alignment and structure
>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12} Back     alignment and structure
>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP} Back     alignment and structure
>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A* Back     alignment and structure
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A* Back     alignment and structure
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 Back     alignment and structure
>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5 Back     alignment and structure
>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans} Back     alignment and structure
>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A Back     alignment and structure
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str} Back     alignment and structure
>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5 Back     alignment and structure
>3ven_A O-carbamoyltransferase TOBZ; antibiotic biosynthesis, substrate assisted catalysis, subst channeling, adenylation; HET: TLA; 1.57A {Streptoalloteichus tenebrarius} PDB: 3veo_A 3ves_A* 3vet_A* 3vew_A* 3ver_A* 3vf4_A* 3vf2_A* 3vex_A* 3vez_A* Back     alignment and structure
>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG; 2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB: 1hkg_A Back     alignment and structure
>3o8m_A Hexokinase; rnaseh-like fold, glycolysis, glucose repression binding, MIG1 binding, transferase; HET: GLC BGC; 1.42A {Kluyveromyces lactis} PDB: 3o1b_A 3o08_A* 3o1w_A* 3o5b_A* 3o4w_A 3o80_A* 3o6w_A* 1ig8_A 3b8a_X* Back     alignment and structure
>3qbx_A Anhydro-N-acetylmuramic acid kinase; acetate and sugar kinases, HSP70, actin superfamily, anhydro-N-actetylmuramic acid binding; HET: AH0; 2.10A {Pseudomonas aeruginosa} PDB: 3qbw_A* Back     alignment and structure
>3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural genomics, PSI-2, shewanella one MR-1, protein structure initiative; 2.30A {Shewanella oneidensis} Back     alignment and structure
>3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 514
d1bupa1185 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPas 3e-87
d1bupa2193 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATP 6e-84
d1dkgd1183 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPas 7e-82
d1dkgd2198 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATP 3e-81
d1jcea2196 c.55.1.1 (A:141-336) Prokaryotic actin homolog Mre 1e-31
d1jcea1137 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB 7e-30
d2zgya2163 c.55.1.1 (A:158-320) Plasmid segregation protein P 4e-27
d1yuwa1159 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus 2e-20
d1u00a2115 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc6 2e-19
d1dkza2118 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxI 3e-19
d2fsja1161 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 6e-19
d1e4ft2191 c.55.1.1 (T:200-390) Cell division protein FtsA {T 0.001
>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 185 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  264 bits (676), Expect = 3e-87
 Identities = 135/186 (72%), Positives = 159/186 (85%), Gaps = 1/186 (0%)

Query: 36  GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNP 95
           G  +GIDLG+TYSCVGV+++G VEIIANDQGNR TPS+VAFTD+ERLIG+AAKNQ A+NP
Sbjct: 1   GPAVGIDLGSTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP 60

Query: 96  DRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAM 155
             T+FD KRLIGR+F+D  VQ DMK  P+ +VN  G+P +QV+   GETK F PEE+S+M
Sbjct: 61  TNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEY-KGETKSFYPEEVSSM 119

Query: 156 ILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIA 215
           +LTKMKE AEA+LGK + +AVVTVPAYFND+QRQATKDAG IAGLNV RIINEPTAAAIA
Sbjct: 120 VLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIA 179

Query: 216 YGLDKK 221
           YGLDKK
Sbjct: 180 YGLDKK 185
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 193 Back     information, alignment and structure
>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 183 Back     information, alignment and structure
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 198 Back     information, alignment and structure
>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 196 Back     information, alignment and structure
>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 137 Back     information, alignment and structure
>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Length = 163 Back     information, alignment and structure
>d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159 Back     information, alignment and structure
>d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} Length = 115 Back     information, alignment and structure
>d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]} Length = 118 Back     information, alignment and structure
>d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 161 Back     information, alignment and structure
>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} Length = 191 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query514
d1bupa2193 Heat shock protein 70kDa, ATPase fragment {Cow (Bo 100.0
d1dkgd2198 Heat shock protein 70kDa, ATPase fragment {Escheri 100.0
d1bupa1185 Heat shock protein 70kDa, ATPase fragment {Cow (Bo 100.0
d1dkgd1183 Heat shock protein 70kDa, ATPase fragment {Escheri 100.0
d1jcea1137 Prokaryotic actin homolog MreB {Thermotoga maritim 99.85
d1jcea2196 Prokaryotic actin homolog MreB {Thermotoga maritim 99.82
d1yuwa1159 DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} 99.63
d1dkza2118 DnaK {Escherichia coli [TaxId: 562]} 99.58
d2zgya2163 Plasmid segregation protein ParM {Escherichia coli 99.54
d1e4ft2191 Cell division protein FtsA {Thermotoga maritima [T 99.53
d1u00a2115 Chaperone protein hscA (Hsc66) {Escherichia coli [ 99.53
d2fsja1161 Hypothetical protein Ta0583 {Archaeon Thermoplasma 99.31
d1huxa_259 Hydroxyglutaryl-CoA dehydratase component A {Acida 98.83
d2fxua2225 Actin {Cow (Bos taurus) [TaxId: 9913]} 98.47
d1k8ka2258 Actin-related protein 3, Arp3 {Cow (Bos taurus) [T 98.42
d1k8kb1190 Actin-related protein 2, Arp2 {Cow (Bos taurus) [T 98.02
d1nbwa3202 ATPase domain of the glycerol dehydratase reactiva 97.86
d2d0oa3203 Diol dehydratase-reactivating factor large subunit 97.82
d2fxua1140 Actin {Cow (Bos taurus) [TaxId: 9913]} 97.21
d1k8ka1158 Actin-related protein 3, Arp3 {Cow (Bos taurus) [T 97.05
d1e4ft1193 Cell division protein FtsA {Thermotoga maritima [T 96.98
d1r59o2235 Glycerol kinase {Enterococcus casseliflavus [TaxId 95.87
d2p3ra2247 Glycerol kinase {Escherichia coli [TaxId: 562]} 95.79
d1zc6a1114 Probable N-acetylglucosamine kinase CV2896 {Chromo 95.35
d2i7na2212 Pantothenate kinase 1, PANK1 {Human (Homo sapiens) 94.9
d2fsja2164 Hypothetical protein Ta0583 {Archaeon Thermoplasma 94.11
d1sz2a1319 Glucokinase Glk {Escherichia coli [TaxId: 562]} 94.04
d2ewsa1267 Type II pantothenate kinase, CoaW {Staphylococcus 92.79
d2zgya1157 Plasmid segregation protein ParM {Escherichia coli 92.26
d2ch5a2117 N-acetylglucosamine kinase, NAGK {Human (Homo sapi 92.25
d1t6ca2180 Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 6 91.22
d2p3ra1252 Glycerol kinase {Escherichia coli [TaxId: 562]} 90.25
d1u6za3177 Exopolyphosphatase Ppx {Escherichia coli [TaxId: 5 88.49
d2hoea2169 N-acetylglucosamine kinase {Thermotoga maritima [T 84.62
d2gupa2175 Hypothetical protein SP2142 {Streptococcus pneumon 84.53
d2aa4a2170 N-acetylmannosamine kinase NanK {Escherichia coli 83.54
d2ap1a1186 Putative regulator protein YcfX {Salmonella typhim 82.35
d1iv0a_98 Hypothetical protein, YqgF homologue {Thermus ther 81.95
d1q18a1110 Glucokinase Glk {Escherichia coli [TaxId: 562]} 81.01
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.8e-37  Score=282.73  Aligned_cols=191  Identities=68%  Similarity=1.070  Sum_probs=182.8

Q ss_pred             CceeEEEEEcCCCeeEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHH
Q 010228          223 GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHGKDISKDKRAIGKLRREAERA  302 (514)
Q Consensus       223 ~~~~vlVvD~GggT~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~  302 (514)
                      .++++||||+||||+|+|++++.++.++++++.++..+||.+||++|.+++.+++.++++.+...+++.+.+|+.+||++
T Consensus         3 ~e~~VlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~   82 (193)
T d1bupa2           3 AERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERA   82 (193)
T ss_dssp             SCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEEeCCCeEEEEEEEEeCCEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHH
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCceEEEEEecccCCceeEEeeeHHHHHHHHHHHHhhhhcHHHHHHHHcCCCccCCCeEEEEcCCcCcHHHHHHH
Q 010228          303 KRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLL  382 (514)
Q Consensus       303 K~~Ls~~~~~~i~i~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~l~~~l  382 (514)
                      |+.||.+.++.+.++.+..+.+...+|+|++|+++++|+++++.++++++|+++++.+.+|+.|+|+||+|++|++++.|
T Consensus        83 K~~ls~~~~~~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~i  162 (193)
T d1bupa2          83 KRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLL  162 (193)
T ss_dssp             HHHHTTSSEEEEEEEEEETTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHHHHTCCGGGCCEEEEESGGGGCHHHHHHH
T ss_pred             hhccCCCceEEEEEecccCCCccceEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCccccHHHHHHH
Confidence            99999999999999988889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHcCCCCCCCCCChhhHHHhHHHHHHHHhc
Q 010228          383 KDYFDGKEPNKGVNPDEAVAYGAAVQGGILS  413 (514)
Q Consensus       383 ~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~  413 (514)
                      ++.|++.++..+.||++|||+|||++|+.++
T Consensus       163 ~~~f~~~~i~~~~~p~~aVa~GaA~~aa~ls  193 (193)
T d1bupa2         163 QDFFNGKELNKSINPDEAVAYGAAVQAAILS  193 (193)
T ss_dssp             HHHTTTCCCBCSSCGGGHHHHHHHHHHHHHC
T ss_pred             HHHcCCCCCCCCCChHHHHHHHHHHHHHhhC
Confidence            9999877888888999999999999999875
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Back     information, alignment and structure
>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Back     information, alignment and structure
>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} Back     information, alignment and structure
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1nbwa3 c.55.1.6 (A:406-607) ATPase domain of the glycerol dehydratase reactivase alpha subunit {Klebsiella pneumoniae [TaxId: 573]} Back     information, alignment and structure
>d2d0oa3 c.55.1.6 (A:404-606) Diol dehydratase-reactivating factor large subunit DdrA {Klebsiella oxytoca [TaxId: 571]} Back     information, alignment and structure
>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1e4ft1 c.55.1.1 (T:7-199) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} Back     information, alignment and structure
>d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]} Back     information, alignment and structure
>d2i7na2 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fsja2 c.55.1.12 (A:1-164) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1sz2a1 c.55.1.7 (A:3-321) Glucokinase Glk {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2zgya1 c.55.1.1 (A:1-157) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ch5a2 c.55.1.5 (A:1-117) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t6ca2 c.55.1.8 (A:133-312) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1u6za3 c.55.1.8 (A:136-312) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2hoea2 c.55.1.10 (A:200-368) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2gupa2 c.55.1.10 (A:115-289) Hypothetical protein SP2142 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d2aa4a2 c.55.1.10 (A:120-289) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ap1a1 c.55.1.10 (A:118-303) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1iv0a_ c.55.3.8 (A:) Hypothetical protein, YqgF homologue {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1q18a1 c.55.1.7 (A:2-111) Glucokinase Glk {Escherichia coli [TaxId: 562]} Back     information, alignment and structure