Citrus Sinensis ID: 010253

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510----
MSPEEVVRDVLTQFPNVGNDLKTLLQMIDDGQAVDIRGISEKSLSKHLRKLFLSLDLKESKDRVFLRRPTDRPTLDVVGTLIQTHMESKAQLPDESASVKHVQPKESEAKDRLAADNNLEMPGPMDDPPGPQRRVIGPAMPSAELLAAAAKLTEAQAELRDAELEEDTELFIGPPPPAMVAEAETANEAERFEEVTRIMGVEGDCPYDVIGANHNMSAENIKKRYWKLSLFVHPDKCPHPQAHQAFIKLNKAFKELQDPEKRKALDEKIKLKEEQEKFKVELKAMQEGAQWRKSQGILMEGDDELLADMEVKAPPKRDEWMTTLPPERKVRAFSLSTASQLLFLKVQCPVPLLTVTVSSLQPGGGVPMHSTKTFSRTSKEGRGDTSVWTDTPSDRAQKAKMNYLEAYSETSALASTEEEKKGARADADLVDKYNKEKRSKSLVQKHQEEGKTRAKKKSKQQPEKEEWVGEHPWKPWDREKDLVAGRQNIKFDSENMAEGLSSRFSSGNFQRNFL
ccHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccccccccEEEcccccccccHHHHHHHccccHHHHccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHcccccccccccccccHHHHHcccHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHcHHHHHHcccccccccccccccc
ccHHHHHHHHHHHcHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHccccccccEEEccccccccEEEEcccEccccccHHccccccccccccccccccccccccccccccccccccccccccccEEcccccHHHHHHHHHHHHHHHHHHccHHHccccccccccccHHHHHHHHHccHHHHHHHHHHHHHccccccHHHccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHccccccccccHHHHHccccccccccccHHHHHHHHHHHcccccccccEEEccccccccccccccEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccHHcccccccccccccHHHcccccccccccHHHHHccccccccccccHcccc
MSPEEVVRDVLTQFPNVGNDLKTLLQMIDDgqavdirgiSEKSLSKHLRKLFLSLdlkeskdrvflrrptdrptlDVVGTLIQTHmeskaqlpdesasvkhvqpkeseakdrlaadnnlempgpmddppgpqrrvigpamPSAELLAAAAKLTEAQAELRDAeleedtelfigppppamvAEAETANEAERFEEVTRImgvegdcpydviganhnmsAENIKKRYWKLSlfvhpdkcphpqaHQAFIKLNKAFKELQDPEKRKALDEKIKLKEEQEKFKVELKAMQEGAQWRKSQGILMEGDDELLAdmevkappkrdewmttlpperkvraFSLSTASQLLFlkvqcpvplltvtvsslqpgggvpmhstktfsrtskegrgdtsvwtdtpsdrAQKAKMNYLEAYSETSALASTEEEKKGARADADLVDKYNKEKRSKSLVQKHQEEGKTRakkkskqqpekeewvgehpwkpwdrekdlvagrqnikfdsenmaEGLSsrfssgnfqrnfl
mspeevvrDVLTQFPNVGNDLKTLLQMIDDGQAVDIRGISEKSLSKHLRKLFlsldlkeskdrvflrrptdrptlDVVGTLIQTHMeskaqlpdesasvkhvqpkeseakdrlaadnnlempgpmddpPGPQRRVIGPAMPSAELLAAAAKLTEAQAELRDAELEEDTELFIGPPPPAMVAEAETANEAERFEEVTRIMGVEGDCPYDVIGANHNMSAENIKKRYWKLSLFVHPDKCPHPQAHQAFIKLNKAFKELQDPEKRKALDEKIKLKEEQEKFKVELKAMQEGAQWRKSQGILMEGDDELLADMEVkappkrdewmttlpPERKVRAFSLSTASQLLFLKVQCPVPLLTVTVsslqpgggvpmhstktfsrtskegrgdtsvwtdtpsdraQKAKMNYLEAYSEtsalasteeekkgaradadlvdkynkekrskslvqkhqeegktrakkkskqqpekeewvgehpwkpwdreKDLVAGRQNIKFDsenmaeglssrfssgnfqrnfl
MSPEEVVRDVLTQFPNVGNDLKTLLQMIDDGQAVDIRGISEKSLSKHLRKLFLSLDLKESKDRVFLRRPTDRPTLDVVGTLIQTHMESKAQLPDESASVKHVQPKESEAKDRLAADNNLEmpgpmddppgpQRRVIGPAMPSaellaaaaklteaqaelRDAELEEDTELFIGPPPPAMVAEAETANEAERFEEVTRIMGVEGDCPYDVIGANHNMSAENIKKRYWKLSLFVHPDKCPHPQAHQAFIKLNKAFKELQDPEKRKALDEKIKLKEEQEKFKVELKAMQEGAQWRKSQGILMEGDDELLADMEVKAPPKRDEWMTTLPPERKVRAFSLSTASQLLFLKVQCPVPLLTVTVSSLQPGGGVPMHSTKTFSRTSKEGRGDTSVWTDTPSDRAQKAKMNYleaysetsalasteeeKKGARADADLVDKYNKEKRSKSLVQKHQEEGKTRAkkkskqqpekeeWVGEHPWKPWDREKDLVAGRQNIKFDSENMAEGLSSRFSSGNFQRNFL
*******RDVLTQFPNVGNDLKTLLQMIDDGQAVDIRGISEKSLSKHLRKLFLSLDLKESKDRVFLRRPTDRPTLDVVGTLI*************************************************************************************************************FEEVTRIMGVEGDCPYDVIGANHNMSAENIKKRYWKLSLFVHPDKCPHPQAHQAFIKLNKA*****************************************************************************VRAFSLSTASQLLFLKVQCPVPLLTVTVSS***********************************************************************************************************************************************************
****EVVRDVLTQFPNVGNDLKTLLQMIDDGQAVDIRGISEKSLSKHLRKLFLSLDLKES**********DRPTLDVVG*******************************************************************************************************************VTRIMGVEGDCPYDVIGANHNMSAENIKKRYWKLSLFVHPDKCPHPQAHQAFIKLNKAFKELQDPEKRKA************************AQWRKSQGILMEGDDELLA*********************************************************************************************************************************************************************WKPWDREKDLV***************************R***
MSPEEVVRDVLTQFPNVGNDLKTLLQMIDDGQAVDIRGISEKSLSKHLRKLFLSLDLKESKDRVFLRRPTDRPTLDVVGTLIQTHME***********************DRLAADNNLEMPGPMDDPPGPQRRVIGPAMPSAELLAAAAKLTEAQAELRDAELEEDTELFIGPPPPAMVAEAETANEAERFEEVTRIMGVEGDCPYDVIGANHNMSAENIKKRYWKLSLFVHPDKCPHPQAHQAFIKLNKAFKELQDPEKRKALDEKIKLKEEQEKFKVELKAMQEGAQWRKSQGILMEGDDELLADMEVKAPPKRDEWMTTLPPERKVRAFSLSTASQLLFLKVQCPVPLLTVTVSSLQPGGGV**********************TDTPSDRAQKAKMNYLEAYSE***************ADADLVDKYNKEK********************************EHPWKPWDREKDLVAGRQNIKFDSENMAEGLSSRFSSGNFQRNFL
MSPEEVVRDVLTQFPNVGNDLKTLLQMIDDGQAVDIRGISEKSLSKHLRKLFLSLDLKESKDRVFLRRPTDRPTLDVVGTLIQTH***********************************************RRVIGPAMPSAELLAAAAKLTEAQAELRDAELEEDTELFIGPPPPAMVAEAETANEAERFEEVTRIMGVEGDCPYDVIGANHNMSAENIKKRYWKLSLFVHPDKCPHPQAHQAFIKLNKAFKELQDPEKRKALDEKIKLKEEQEKFKVELKAMQEGAQWR**Q***MEGDDELLADM*****PKRDEWMTTLPPERKVRAFSLSTASQLLFLKVQCPVPLLTVTVSS**************************SVWTDTPSDRAQKAKMNYLEAYSETSALASTEE********ADL*D*Y**EKRSKSLVQKHQEE**********************PWKPWDREKDLVAGRQNIKFD**********************
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSPEEVVRDVLTQFPNVGNDLKTLLQMIDDGQAVDIRGISEKSLSKHLRKLFLSLDLKESKDRVFLRRPTDRPTLDVVGTLIQTHMESKAQLPDESASVKHVQPKESEAKDRLAADNNLEMPGPMDDPPGPQRRVIGPAMPSAExxxxxxxxxxxxxxxxxxxxxEDTELFIGPPPPAMVAEAETANEAERFEEVTRIMGVEGDCPYDVIGANHNMSAENIKKRYWKLSLFVHPDKCPHPQAHQAFIKLNKAFKELQDPExxxxxxxxxxxxxxxxxxxxxLKAMQEGAQWRKSQGILMEGDDELLADMEVKAPPKRDEWMTTLPPERKVRAFSLSTASQLLFLKVQCPVPLLTVTVSSLQPGGGVPMHSTKTFSRTSKEGRGDTSVWTDTPSDRAQKAKMNYLEAYSETSALASTEEEKKGARADADLVDKYNKEKRSKSLVQKHQEEGKTRAKKKSKQQPEKEEWVGEHPWKPWDREKDLVAGRQNIKFDSENMAEGLSSRFSSGNFQRNFL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query514 2.2.26 [Sep-21-2011]
Q4V893348 Uncharacterized protein K yes no 0.293 0.433 0.296 5e-09
Q69ZC8346 Uncharacterized protein K yes no 0.293 0.436 0.287 3e-08
O66921376 Chaperone protein DnaJ 2 yes no 0.116 0.159 0.433 1e-07
Q8IXQ4340 Uncharacterized protein K yes no 0.293 0.444 0.292 3e-07
P56101195 Cysteine string protein O N/A no 0.136 0.358 0.436 5e-07
P87239 528 DnaJ homolog 1, mitochond yes no 0.118 0.115 0.409 6e-07
Q28I38375 DnaJ homolog subfamily B yes no 0.116 0.16 0.45 1e-06
Q5R863344 Uncharacterized protein K yes no 0.231 0.345 0.344 1e-06
Q921R4703 DnaJ homolog subfamily C no no 0.147 0.108 0.382 1e-06
Q9QYI4376 DnaJ homolog subfamily B no no 0.182 0.25 0.353 1e-06
>sp|Q4V893|K1704_RAT Uncharacterized protein KIAA1704 homolog OS=Rattus norvegicus PE=2 SV=1 Back     alignment and function desciption
 Score = 63.2 bits (152), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 93/219 (42%), Gaps = 68/219 (31%)

Query: 298 LMEGDDELLADMEVKAPPKRDEWMTTLPPERKVRAFSLSTASQLLFLKVQCPVPLLTVTV 357
           L +GDD+         P  R+ WMT LPPE  ++ F L                      
Sbjct: 183 LTKGDDD------SPKPVTRESWMTELPPE--MKDFGLGP-------------------- 214

Query: 358 SSLQPGGGVPMHSTKTFSRTSKEGRGDTSVWTDTPSDRAQKAKMNYLEAYSETSALASTE 417
                         +TF R + +  GD SVWTDTP+DR +KAK    E      +L+  +
Sbjct: 215 --------------RTFKRRADDKSGDRSVWTDTPADRERKAK----EIQEARKSLSKKD 256

Query: 418 EEKKGARAD---ADLVDKYNKEKRSKSLVQKHQEEGKTRAKKKSKQQPEKEEWVGEHPWK 474
           EE   +  D   A+ V  YN+ KRS+SL+  H +  KT+A +   +  E+          
Sbjct: 257 EENMLSGRDKRLAEQVSSYNESKRSESLMDIHHKRLKTKAAEDKNRHQER---------T 307

Query: 475 PWDREKDLVAGRQNIKFDSEN------MAEGLSSRFSSG 507
           P+DR+KDL   R    FD          +  L++RFS G
Sbjct: 308 PFDRDKDLKVNR----FDEAQKKALIKKSRELNTRFSHG 342

Rattus norvegicus (taxid: 10116)
>sp|Q69ZC8|K1704_MOUSE Uncharacterized protein KIAA1704 OS=Mus musculus GN=Kiaa1704 PE=1 SV=2 Back     alignment and function description
>sp|O66921|DNAJ2_AQUAE Chaperone protein DnaJ 2 OS=Aquifex aeolicus (strain VF5) GN=dnaJ2 PE=3 SV=1 Back     alignment and function description
>sp|Q8IXQ4|K1704_HUMAN Uncharacterized protein KIAA1704 OS=Homo sapiens GN=KIAA1704 PE=1 SV=1 Back     alignment and function description
>sp|P56101|CSP_TORCA Cysteine string protein OS=Torpedo californica PE=1 SV=1 Back     alignment and function description
>sp|P87239|MDJ1_SCHPO DnaJ homolog 1, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mdj1 PE=4 SV=1 Back     alignment and function description
>sp|Q28I38|DJB14_XENTR DnaJ homolog subfamily B member 14 OS=Xenopus tropicalis GN=dnajb14 PE=2 SV=1 Back     alignment and function description
>sp|Q5R863|K1704_PONAB Uncharacterized protein KIAA1704 homolog OS=Pongo abelii PE=2 SV=1 Back     alignment and function description
>sp|Q921R4|DJC14_MOUSE DnaJ homolog subfamily C member 14 OS=Mus musculus GN=Dnajc14 PE=2 SV=2 Back     alignment and function description
>sp|Q9QYI4|DJB12_MOUSE DnaJ homolog subfamily B member 12 OS=Mus musculus GN=Dnajb12 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query514
255571754582 conserved hypothetical protein [Ricinus 0.922 0.814 0.708 0.0
356576153569 PREDICTED: uncharacterized protein LOC10 0.931 0.841 0.653 0.0
356535705573 PREDICTED: uncharacterized protein LOC10 0.918 0.823 0.661 0.0
225460732571 PREDICTED: uncharacterized protein LOC10 0.922 0.830 0.666 1e-177
224146396584 predicted protein [Populus trichocarpa] 0.931 0.820 0.678 1e-165
449465354597 PREDICTED: uncharacterized protein LOC10 0.924 0.795 0.638 1e-161
449496866596 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.924 0.796 0.634 1e-161
3335336605 Contains similarity to DnaJ gene YM8520. 0.914 0.776 0.603 1e-156
145337191588 DNAJ heat shock N-terminal domain-contai 0.914 0.799 0.619 1e-155
297837907590 hypothetical protein ARALYDRAFT_475539 [ 0.914 0.796 0.617 1e-155
>gi|255571754|ref|XP_002526820.1| conserved hypothetical protein [Ricinus communis] gi|223533824|gb|EEF35555.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/518 (70%), Positives = 410/518 (79%), Gaps = 44/518 (8%)

Query: 1   MSPEEVVRDVLTQFPNVGNDLKTLLQMIDDGQAVDIRGISEKSLSKHLRKLFLSLDLKES 60
           ++PE+VVRD+L +FPNVG+DLK LL+MIDDGQAVDI+GISE+SL KHL+KLF+SL+LKE+
Sbjct: 105 INPEDVVRDMLKEFPNVGSDLKQLLEMIDDGQAVDIKGISERSLIKHLKKLFVSLNLKEN 164

Query: 61  KDRVFLRRPTDRPTLDVVGTLIQTHMESKAQ--LPDESASVKHVQPKESEAKDRLAADNN 118
            DRVFL      PTL+VVG LI +H+E K Q  L D ++    V+ K      +L+ DNN
Sbjct: 165 GDRVFLLPSNHCPTLEVVGHLINSHLEPKEQKRLNDVNSVPPAVESK------KLSDDNN 218

Query: 119 -LEMPGPMDDPPGPQRRVIGPAMPSAELLAAAAKLTEAQAELRDAELEEDTELFIGPPPP 177
            L M  P DD  GP+RR++GP MPSAELLAAAAKLTEAQAELR+ ELEEDTELFIGPPPP
Sbjct: 219 DLPMASPGDDLSGPKRRMMGPEMPSAELLAAAAKLTEAQAELREVELEEDTELFIGPPPP 278

Query: 178 AMVAEAETANEAERFEEVTRIMGVEGDCPYDVIGANHNMSAENIKKRYWKLSLFVHPDKC 237
           AMVAEAE+ANEAERFEEVTRIM VE D PYDV+G NHNMSAENIKKRYWK+SL VHPDKC
Sbjct: 279 AMVAEAESANEAERFEEVTRIMAVEDDSPYDVVGVNHNMSAENIKKRYWKMSLLVHPDKC 338

Query: 238 PHPQAHQAFIKLNKAFKELQDPEKRKALDEKIKLKEEQEKFKVELKAMQEGAQWRKSQGI 297
            HPQAHQAFIKLNKAFKELQDP+KRK LDE+IKLKEEQE FKVELKAM+E AQWR+ QGI
Sbjct: 339 SHPQAHQAFIKLNKAFKELQDPDKRKLLDEQIKLKEEQEAFKVELKAMREAAQWRRLQGI 398

Query: 298 LMEGDDELLADMEVKAPPKRDEWMTTLPPERKVRAFSLSTASQLLFLKVQCPVPLLTVTV 357
            MEGDDELLA+MEVK  P+RDEWMTTLPPERK                            
Sbjct: 399 SMEGDDELLAEMEVKVAPQRDEWMTTLPPERK---------------------------- 430

Query: 358 SSLQPGGGVPMHSTKTFSRTSKEGRGDTSVWTDTPSDRAQKAKMNYLEAYSETSALASTE 417
                  G+ M ST  F + SKEGRGDTSVWTDTPSDRAQKAKMNYLEAY+E +AL S E
Sbjct: 431 ------PGMTMQSTTRFGKCSKEGRGDTSVWTDTPSDRAQKAKMNYLEAYNEAAALVSNE 484

Query: 418 EEKKGARADADLVDKYNKEKRSKSLVQKHQEEGKTR-AKKKSKQQPEKEEWVGEHPWKPW 476
           EEK    ADADLVDKYNK KRSKSLVQKHQEE   R  KK  +QQP+KEEWVG+HPWKPW
Sbjct: 485 EEKTKMSADADLVDKYNKAKRSKSLVQKHQEEAVNRSKKKSKQQQPQKEEWVGQHPWKPW 544

Query: 477 DREKDLVAGRQNIKFDSENMAEGLSSRFSSGNFQRNFL 514
           DREKDLVAGRQNIKFDS+NMA+GLSSRFSSGNFQRNFL
Sbjct: 545 DREKDLVAGRQNIKFDSDNMAQGLSSRFSSGNFQRNFL 582

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356576153|ref|XP_003556198.1| PREDICTED: uncharacterized protein LOC100796738 [Glycine max] Back     alignment and taxonomy information
>gi|356535705|ref|XP_003536384.1| PREDICTED: uncharacterized protein LOC100788598 [Glycine max] Back     alignment and taxonomy information
>gi|225460732|ref|XP_002267868.1| PREDICTED: uncharacterized protein LOC100255442 [Vitis vinifera] gi|147843178|emb|CAN80552.1| hypothetical protein VITISV_004743 [Vitis vinifera] gi|296081144|emb|CBI18170.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224146396|ref|XP_002325992.1| predicted protein [Populus trichocarpa] gi|222862867|gb|EEF00374.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449465354|ref|XP_004150393.1| PREDICTED: uncharacterized protein LOC101213388 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449496866|ref|XP_004160248.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101213388 [Cucumis sativus] Back     alignment and taxonomy information
>gi|3335336|gb|AAC27138.1| Contains similarity to DnaJ gene YM8520.10 gb|825566 from from S. cerevisiae cosmid gb|Z49705. ESTs gb|Z47720 and gb|Z29879 come from this gene [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|145337191|ref|NP_176707.3| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] gi|110741606|dbj|BAE98751.1| hypothetical protein [Arabidopsis thaliana] gi|332196232|gb|AEE34353.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297837907|ref|XP_002886835.1| hypothetical protein ARALYDRAFT_475539 [Arabidopsis lyrata subsp. lyrata] gi|297332676|gb|EFH63094.1| hypothetical protein ARALYDRAFT_475539 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query514
TAIR|locus:2206285588 AT1G65280 [Arabidopsis thalian 0.622 0.544 0.628 9.8e-103
TAIR|locus:504956462246 AT5G22080 [Arabidopsis thalian 0.223 0.467 0.333 2.6e-10
DICTYBASE|DDB_G0290017176 DDB_G0290017 "DnaJ homolog sub 0.167 0.488 0.37 3.2e-09
MGI|MGI:1914717346 1200011I18Rik "RIKEN cDNA 1200 0.243 0.361 0.316 5.9e-09
FB|FBgn0037151128 CG7130 [Drosophila melanogaste 0.118 0.476 0.426 1.8e-08
GENEDB_PFALCIPARUM|PF13_0036322 PF13_0036 "DNAJ protein, putat 0.206 0.329 0.296 2e-08
UNIPROTKB|Q8IEP3322 PF13_0036 "DNAJ protein, putat 0.206 0.329 0.296 2e-08
FB|FBgn0052640132 CG32640 [Drosophila melanogast 0.126 0.492 0.369 3e-08
FB|FBgn0052641132 CG32641 [Drosophila melanogast 0.126 0.492 0.369 3e-08
ZFIN|ZDB-GENE-081021-2199 dnajc5ab "DnaJ (Hsp40) homolog 0.138 0.356 0.416 2.4e-07
TAIR|locus:2206285 AT1G65280 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1018 (363.4 bits), Expect = 9.8e-103, P = 9.8e-103
 Identities = 206/328 (62%), Positives = 242/328 (73%)

Query:     3 PEEVVRDVLTQFPNVGNDLKTLLQMIDDGQAVDIRGISEKSLSKHLRKLFLSLDLKESKD 62
             PE VV+++L +FPNVGNDLK LL+MIDDGQAVDI+GISE +L K L+KLFLSL LKE  D
Sbjct:   111 PETVVKEMLLEFPNVGNDLKQLLKMIDDGQAVDIKGISESTLKKRLKKLFLSLKLKERGD 170

Query:    63 RVFLRRPTDRPTLDVVGTLIQTHMESKAQLPDESASVKHVQPKESEAKDRLAADNNLEXX 122
             RVFL  P   P+LDVVG LI+   E   +  D+S+ +K       E +  LA +N L   
Sbjct:   171 RVFLLPPGASPSLDVVGHLIKGGEEDVEKSLDDSSPLK-------ETEKGLADENGL-GS 222

Query:   123 XXXXXXXXXQRRVIGPAMPSXXXXXXXXXXXXXXXXXRDAELEEDTELFIGPPPPAMVAE 182
                      ++RVIGPAMPS                 R+AELEED+E FIGP PPA+VAE
Sbjct:   223 NSADDVTGPKKRVIGPAMPSAELLAAAAKLTEAQAELREAELEEDSEYFIGPAPPAVVAE 282

Query:   183 AETANEAERFEEVTRIMGVEGDCPYDVIGANHNMSAENIKKRYWKLSLFVHPDKCPHPQA 242
               ++NEAERFEEVTRIM  + + PYDV+G NHNM+A+N+KKRYWKLSL VHPDKC HPQA
Sbjct:   283 VASSNEAERFEEVTRIMEADANSPYDVLGVNHNMAADNMKKRYWKLSLLVHPDKCSHPQA 342

Query:   243 HQAFIKLNKAFKELQDPEKRKALDEKIKLKEEQEKFKVELKAMQEGAQWRKSQGILMEGD 302
              +AF+ LNKAFKELQDPEKRKA+D+KIKLKEEQE FKVEL++MQE AQWR+SQGI MEGD
Sbjct:   343 QEAFVLLNKAFKELQDPEKRKAMDDKIKLKEEQEAFKVELRSMQEAAQWRRSQGISMEGD 402

Query:   303 DELLADMEVKAPPKRDEWMTTLPPERKV 330
              ELLA  EVK  PKRDEWMTTLPPERKV
Sbjct:   403 AELLAATEVKPEPKRDEWMTTLPPERKV 430
GO:0005634 "nucleus" evidence=ISM
GO:0006457 "protein folding" evidence=ISS
GO:0031072 "heat shock protein binding" evidence=IEA
GO:0007346 "regulation of mitotic cell cycle" evidence=RCA
GO:0010048 "vernalization response" evidence=RCA
TAIR|locus:504956462 AT5G22080 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0290017 DDB_G0290017 "DnaJ homolog subfamily C member 5B" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
MGI|MGI:1914717 1200011I18Rik "RIKEN cDNA 1200011I18 gene" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
FB|FBgn0037151 CG7130 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PF13_0036 PF13_0036 "DNAJ protein, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IEP3 PF13_0036 "DNAJ protein, putative" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
FB|FBgn0052640 CG32640 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0052641 CG32641 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-081021-2 dnajc5ab "DnaJ (Hsp40) homolog, subfamily C, member 5ab" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query514
pfam12572148 pfam12572, DUF3752, Protein of unknown function (D 1e-31
pfam0022663 pfam00226, DnaJ, DnaJ domain 3e-16
cd0625755 cd06257, DnaJ, DnaJ domain or J-domain 9e-15
smart0027160 smart00271, DnaJ, DnaJ molecular chaperone homolog 3e-13
COG0484371 COG0484, DnaJ, DnaJ-class molecular chaperone with 7e-12
PRK14291382 PRK14291, PRK14291, chaperone protein DnaJ; Provis 2e-10
TIGR02349354 TIGR02349, DnaJ_bact, chaperone protein DnaJ 9e-10
PRK14292371 PRK14292, PRK14292, chaperone protein DnaJ; Provis 3e-08
PRK14276380 PRK14276, PRK14276, chaperone protein DnaJ; Provis 6e-08
PRK14298377 PRK14298, PRK14298, chaperone protein DnaJ; Provis 7e-08
COG2214237 COG2214, CbpA, DnaJ-class molecular chaperone [Pos 8e-08
PRK14277386 PRK14277, PRK14277, chaperone protein DnaJ; Provis 5e-07
PRK14301373 PRK14301, PRK14301, chaperone protein DnaJ; Provis 5e-07
PRK14284391 PRK14284, PRK14284, chaperone protein DnaJ; Provis 6e-07
PRK14278378 PRK14278, PRK14278, chaperone protein DnaJ; Provis 1e-06
PRK14299291 PRK14299, PRK14299, chaperone protein DnaJ; Provis 1e-06
PRK14294366 PRK14294, PRK14294, chaperone protein DnaJ; Provis 1e-06
PRK14287371 PRK14287, PRK14287, chaperone protein DnaJ; Provis 2e-06
PRK14279392 PRK14279, PRK14279, chaperone protein DnaJ; Provis 3e-06
PRK14283378 PRK14283, PRK14283, chaperone protein DnaJ; Provis 3e-06
PRK14290365 PRK14290, PRK14290, chaperone protein DnaJ; Provis 6e-06
PRK14281397 PRK14281, PRK14281, chaperone protein DnaJ; Provis 6e-06
PRK14289386 PRK14289, PRK14289, chaperone protein DnaJ; Provis 7e-06
PRK10767371 PRK10767, PRK10767, chaperone protein DnaJ; Provis 8e-06
PRK14297380 PRK14297, PRK14297, chaperone protein DnaJ; Provis 8e-06
PTZ00037421 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov 9e-06
PRK14280376 PRK14280, PRK14280, chaperone protein DnaJ; Provis 1e-05
PRK14286372 PRK14286, PRK14286, chaperone protein DnaJ; Provis 1e-05
PRK14296372 PRK14296, PRK14296, chaperone protein DnaJ; Provis 2e-05
PRK14293374 PRK14293, PRK14293, chaperone protein DnaJ; Provis 3e-05
PRK14300372 PRK14300, PRK14300, chaperone protein DnaJ; Provis 7e-05
PRK14282369 PRK14282, PRK14282, chaperone protein DnaJ; Provis 7e-05
PRK14295389 PRK14295, PRK14295, chaperone protein DnaJ; Provis 2e-04
COG5407 610 COG5407, SEC63, Preprotein translocase subunit Sec 0.001
TIGR03835 871 TIGR03835, termin_org_DnaJ, terminal organelle ass 0.002
>gnl|CDD|221643 pfam12572, DUF3752, Protein of unknown function (DUF3752) Back     alignment and domain information 
 Score =  118 bits (298), Expect = 1e-31
 Identities = 50/153 (32%), Positives = 79/153 (51%), Gaps = 13/153 (8%)

Query: 358 SSLQPGGGVPMHSTKTFSRTSKEGRGDTSVWTDTPSDRAQKAKMNYLEAYSETSALA-ST 416
           S L           + FS  +K  RGD S WT+TP ++A++ +   L   +  SA A ++
Sbjct: 5   SDLNSRVDPTKLRNRKFSTGTKSARGDDSSWTETPEEKAKRLQDEVLGVEAGASAPAAAS 64

Query: 417 EEEKKGARADADLVDKYNKEKRSKSLVQKHQEEGKTRAKKKSKQQPEKEEWVGEHPWKPW 476
            +  K  +  A  V +YN++KR KSLV++HQ++         +++ +KEE   +   +P+
Sbjct: 65  AKASKRDKEMARKVKEYNEKKRGKSLVEQHQKK---------QKKKKKEEENDDPSRRPF 115

Query: 477 DREKDLVAGRQNIKFDSENM---AEGLSSRFSS 506
           DREKDL  G +  K     +   A  L SRFSS
Sbjct: 116 DREKDLAVGGKISKAQRRELINKAAELGSRFSS 148

This domain family is found in eukaryotes, and is typically between 140 and 163 amino acids in length. Length = 148
>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain Back     alignment and domain information
>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain Back     alignment and domain information
>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain Back     alignment and domain information
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ Back     alignment and domain information
>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional Back     alignment and domain information
>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 514
KOG4188159 consensus Uncharacterized conserved protein [Funct 100.0
KOG0719264 consensus Molecular chaperone (DnaJ superfamily) [ 99.96
PF12572152 DUF3752: Protein of unknown function (DUF3752); In 99.94
COG0484371 DnaJ DnaJ-class molecular chaperone with C-termina 99.83
KOG0713336 consensus Molecular chaperone (DnaJ superfamily) [ 99.82
KOG0712337 consensus Molecular chaperone (DnaJ superfamily) [ 99.72
PRK14288369 chaperone protein DnaJ; Provisional 99.72
PRK14296372 chaperone protein DnaJ; Provisional 99.71
PRK14279392 chaperone protein DnaJ; Provisional 99.67
KOG0691296 consensus Molecular chaperone (DnaJ superfamily) [ 99.67
PRK14286372 chaperone protein DnaJ; Provisional 99.66
PTZ00037421 DnaJ_C chaperone protein; Provisional 99.66
PRK14287371 chaperone protein DnaJ; Provisional 99.66
PRK14283378 chaperone protein DnaJ; Provisional 99.65
PRK14276380 chaperone protein DnaJ; Provisional 99.65
PRK14299291 chaperone protein DnaJ; Provisional 99.65
PRK14298377 chaperone protein DnaJ; Provisional 99.64
PRK14291382 chaperone protein DnaJ; Provisional 99.64
PRK14278378 chaperone protein DnaJ; Provisional 99.64
PF0022664 DnaJ: DnaJ domain; InterPro: IPR001623 The prokary 99.63
PRK14280376 chaperone protein DnaJ; Provisional 99.63
PRK14282369 chaperone protein DnaJ; Provisional 99.63
PRK14285365 chaperone protein DnaJ; Provisional 99.62
PRK14277386 chaperone protein DnaJ; Provisional 99.62
PRK14294366 chaperone protein DnaJ; Provisional 99.62
KOG0716279 consensus Molecular chaperone (DnaJ superfamily) [ 99.61
PRK14284391 chaperone protein DnaJ; Provisional 99.6
PRK14297380 chaperone protein DnaJ; Provisional 99.6
PRK14295389 chaperone protein DnaJ; Provisional 99.6
KOG0717 508 consensus Molecular chaperone (DnaJ superfamily) [ 99.6
PRK14301373 chaperone protein DnaJ; Provisional 99.6
PRK10767371 chaperone protein DnaJ; Provisional 99.59
KOG0718 546 consensus Molecular chaperone (DnaJ superfamily) [ 99.59
PRK14281397 chaperone protein DnaJ; Provisional 99.58
PRK10266306 curved DNA-binding protein CbpA; Provisional 99.57
TIGR02349354 DnaJ_bact chaperone protein DnaJ. This model repre 99.57
PRK14300372 chaperone protein DnaJ; Provisional 99.57
PTZ00341 1136 Ring-infected erythrocyte surface antigen; Provisi 99.57
PRK14292371 chaperone protein DnaJ; Provisional 99.56
PRK14293374 chaperone protein DnaJ; Provisional 99.56
KOG0715288 consensus Molecular chaperone (DnaJ superfamily) [ 99.56
PRK14289386 chaperone protein DnaJ; Provisional 99.55
PRK14290365 chaperone protein DnaJ; Provisional 99.55
smart0027160 DnaJ DnaJ molecular chaperone homology domain. 99.51
cd0625755 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho 99.48
KOG0720490 consensus Molecular chaperone (DnaJ superfamily) [ 99.44
TIGR03835 871 termin_org_DnaJ terminal organelle assembly protei 99.44
COG2214237 CbpA DnaJ-class molecular chaperone [Posttranslati 99.44
KOG0721230 consensus Molecular chaperone (DnaJ superfamily) [ 99.43
PHA03102153 Small T antigen; Reviewed 99.37
PRK05014171 hscB co-chaperone HscB; Provisional 99.27
PRK01356166 hscB co-chaperone HscB; Provisional 99.26
KOG0722329 consensus Molecular chaperone (DnaJ superfamily) [ 99.23
PRK00294173 hscB co-chaperone HscB; Provisional 99.22
KOG0624504 consensus dsRNA-activated protein kinase inhibitor 99.19
PRK03578176 hscB co-chaperone HscB; Provisional 99.18
COG5269379 ZUO1 Ribosome-associated chaperone zuotin [Transla 99.16
KOG0714306 consensus Molecular chaperone (DnaJ superfamily) [ 99.12
PHA02624 647 large T antigen; Provisional 99.11
KOG0550486 consensus Molecular chaperone (DnaJ superfamily) [ 99.09
KOG1150250 consensus Predicted molecular chaperone (DnaJ supe 99.04
PRK09430267 djlA Dna-J like membrane chaperone protein; Provis 98.97
PTZ00100116 DnaJ chaperone protein; Provisional 98.96
COG5407 610 SEC63 Preprotein translocase subunit Sec63 [Intrac 98.83
PRK01773173 hscB co-chaperone HscB; Provisional 98.81
TIGR00714157 hscB Fe-S protein assembly co-chaperone HscB. This 98.7
KOG1789 2235 consensus Endocytosis protein RME-8, contains DnaJ 97.9
KOG0568342 consensus Molecular chaperone (DnaJ superfamily) [ 97.83
KOG0723112 consensus Molecular chaperone (DnaJ superfamily) [ 96.51
KOG3192168 consensus Mitochondrial J-type chaperone [Posttran 96.22
KOG0431453 consensus Auxilin-like protein and related protein 95.51
COG1076174 DjlA DnaJ-domain-containing proteins 1 [Posttransl 94.33
COG1076174 DjlA DnaJ-domain-containing proteins 1 [Posttransl 93.44
PF03656127 Pam16: Pam16; InterPro: IPR005341 The Pam16 protei 83.66
>KOG4188 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=2.1e-35  Score=265.07  Aligned_cols=156  Identities=49%  Similarity=0.810  Sum_probs=134.2

Q ss_pred             ccccccccCCchhhhhhhhcccccHHHHHhhccCCchhHHHHHhhhcCCCCCCCccccccccCCCCCCCCCCCCCCChHH
Q 010253          315 PKRDEWMTTLPPERKVRAFSLSTASQLLFLKVQCPVPLLTVTVSSLQPGGGVPMHSTKTFSRTSKEGRGDTSVWTDTPSD  394 (514)
Q Consensus       315 ~~re~WMt~LpeE~~~~~Y~~~~dm~~i~~~v~~De~Rf~~iI~~~I~~g~l~~~~~~~F~~~~~~~~~d~S~WTeTP~~  394 (514)
                      +.||+|||.||+++.                                . +++... +++|++++..++||+|+||+||.+
T Consensus         2 pkReeWMt~lP~e~~--------------------------------~-~gl~~~-~rTFkrga~~~sgd~ssWtdtP~d   47 (159)
T KOG4188|consen    2 PKREEWMTTLPPERK--------------------------------V-FGLGQQ-SRTFKRGAREGSGDRSSWTDTPMD   47 (159)
T ss_pred             chHHHHHHhCCchhc--------------------------------c-cccccc-chhhhcccccCCCcccccccCccc
Confidence            479999999999987                                2 245444 799999999999999999999999


Q ss_pred             HHHHHHhhhhhhhhhhhhhhchHHHhhhhhHHHHHHHHHHhhcCCcchHHHhHHHhhhhhhhhcCCCCccccccCCCCCC
Q 010253          395 RAQKAKMNYLEAYSETSALASTEEEKKGARADADLVDKYNKEKRSKSLVQKHQEEGKTRAKKKSKQQPEKEEWVGEHPWK  474 (514)
Q Consensus       395 k~~r~~~~~~~~~~~~~a~~~~~~~~~~~~~~~e~v~~~n~~~R~~SLle~Hq~k~k~~~~~~~~~~~~k~~~~~~~~~r  474 (514)
                      |++|+++.++..+..+.++.+.+.+..+..+++++|+.||+++|++||||+||+++.++.+         .+|...++||
T Consensus        48 ke~rak~t~~ars~sskale~~~~~~~~~~rdaeqvs~~nkkkr~eSLvEiHqkk~~sK~k---------d~~~~q~err  118 (159)
T KOG4188|consen   48 KERRAKETYLARSNSSKALESNEGENMKRSRDAEQVSKYNKKKRAESLVEIHQKKLSSKEK---------DEWKPQHERR  118 (159)
T ss_pred             HHHHHHhhhhhhhhhhHHHHHhhhhhhhhhhhHHHHHHHHhhhcchHHHHHHHHHHhHHHH---------hcccCcccCC
Confidence            9999999988777777777777777777889999999999999999999999999987632         2345567899


Q ss_pred             CCchhhhcccCCCC--ccccHHHHhcccCCCCCCCcccCCCC
Q 010253          475 PWDREKDLVAGRQN--IKFDSENMAEGLSSRFSSGNFQRNFL  514 (514)
Q Consensus       475 pFDRekDl~~~~~~--~~~~~~~~a~~l~sRFs~g~~~r~FL  514 (514)
                      |||||+||.|++++  ...+.+.+|++|++|||+|++| .||
T Consensus       119 PfdRekDlkv~r~d~n~kk~avdkak~latkFs~gk~q-rfl  159 (159)
T KOG4188|consen  119 PFDREKDLKVNRQDPNQKKDAVDKAKELATKFSSGKFQ-RFL  159 (159)
T ss_pred             CccccccccccccCcchhHHHHHHHHHHHHHhccCccc-ccC
Confidence            99999999999994  4445589999999999999999 565

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12572 DUF3752: Protein of unknown function (DUF3752); InterPro: IPR022226 This domain family is found in eukaryotes, and is typically between 140 and 163 amino acids in length Back     alignment and domain information
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14288 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14296 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14279 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14286 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PTZ00037 DnaJ_C chaperone protein; Provisional Back     alignment and domain information
>PRK14287 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14283 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14276 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14299 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14298 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14291 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14278 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein [] Back     alignment and domain information
>PRK14280 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14282 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14285 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14277 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14294 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14284 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14297 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14295 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14301 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10767 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14281 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10266 curved DNA-binding protein CbpA; Provisional Back     alignment and domain information
>TIGR02349 DnaJ_bact chaperone protein DnaJ Back     alignment and domain information
>PRK14300 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional Back     alignment and domain information
>PRK14292 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14293 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14289 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14290 chaperone protein DnaJ; Provisional Back     alignment and domain information
>smart00271 DnaJ DnaJ molecular chaperone homology domain Back     alignment and domain information
>cd06257 DnaJ DnaJ domain or J-domain Back     alignment and domain information
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ Back     alignment and domain information
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA03102 Small T antigen; Reviewed Back     alignment and domain information
>PRK05014 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>PRK01356 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK00294 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] Back     alignment and domain information
>PRK03578 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA02624 large T antigen; Provisional Back     alignment and domain information
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional Back     alignment and domain information
>PTZ00100 DnaJ chaperone protein; Provisional Back     alignment and domain information
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK01773 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB Back     alignment and domain information
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only] Back     alignment and domain information
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query514
2ctp_A78 Solution Structure Of J-Domain From Human Dnaj Subf 5e-07
2ctw_A109 Solution Structure Of J-Domain From Mouse Dnaj Subf 1e-06
3apq_A210 Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt 2e-06
3apo_A 780 Crystal Structure Of Full-Length Erdj5 Length = 780 3e-06
2cug_A88 Solution Structure Of The J Domain Of The Pseudo Dn 1e-05
2lo1_A71 Nmr Structure Of The Protein Bc008182, A Dnaj-Like 3e-05
2ctr_A88 Solution Structure Of J-Domain From Human Dnaj Subf 7e-05
2dmx_A92 Solution Structure Of The J Domain Of Dnaj Homolog 3e-04
2och_A73 J-domain Of Dnj-12 From Caenorhabditis Elegans Leng 3e-04
2dn9_A79 Solution Structure Of J-Domain From The Dnaj Homolo 4e-04
1hdj_A77 Human Hsp40 (Hdj-1), Nmr Length = 77 5e-04
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78 Back     alignment and structure 
Iteration: 1

 Score = 52.8 bits (125), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 200 GVEGDCPYDVIGANHNMSAENIKKRYWKLSLFVHPDKCPHPQAHQAFIKLNKAFKELQDP 259
           G  GD  Y+++G +   S E++KK Y +L+L  HPDK   P A +AF  +  A+  L +P
Sbjct: 4   GSSGDY-YEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNP 62
Query: 260 EKRKALDE 267
           EKRK  D+
Sbjct: 63  EKRKQYDQ 70
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109 Back     alignment and structure
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210 Back     alignment and structure
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780 Back     alignment and structure
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88 Back     alignment and structure
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71 Back     alignment and structure
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88 Back     alignment and structure
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92 Back     alignment and structure
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73 Back     alignment and structure
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79 Back     alignment and structure
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query514
2ys8_A90 RAB-related GTP-binding protein RABJ; DNAJ domain, 1e-14
3apq_A210 DNAJ homolog subfamily C member 10; thioredoxin fo 4e-12
1hdj_A77 Human HSP40, HDJ-1; molecular chaperone; NMR {Homo 2e-11
2cug_A88 Mkiaa0962 protein; DNAJ-like domain, structural ge 3e-11
2ctp_A78 DNAJ homolog subfamily B member 12; J-domain, chap 3e-11
2ctr_A88 DNAJ homolog subfamily B member 9; J-domain, chape 7e-11
2ctq_A112 DNAJ homolog subfamily C member 12; J-domain, chap 5e-10
2l6l_A155 DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, 5e-10
2dn9_A79 DNAJ homolog subfamily A member 3; J-domain, TID1, 1e-09
2ctw_A109 DNAJ homolog subfamily C member 5; J-domain, chape 1e-09
1bq0_A103 DNAJ, HSP40; chaperone, heat shock, protein foldin 1e-09
2yua_A99 Williams-beuren syndrome chromosome region 18 prot 2e-09
2och_A73 Hypothetical protein DNJ-12; HSP40, J-domain, chap 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-06
3apo_A 780 DNAJ homolog subfamily C member 10; PDI family, th 5e-09
1wjz_A94 1700030A21RIK protein; J-domain, DNAJ like protein 1e-08
2o37_A92 Protein SIS1; HSP40, J-domain, cochaperone, APC900 1e-08
2qsa_A109 DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s 1e-08
2lgw_A99 DNAJ homolog subfamily B member 2; J domain, HSJ1A 2e-08
1n4c_A182 Auxilin; four helix bundle, protein binding; NMR { 3e-08
2ej7_A82 HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati 4e-08
2dmx_A92 DNAJ homolog subfamily B member 8; DNAJ J domain, 5e-08
2pf4_E174 Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, 3e-07
3lz8_A329 Putative chaperone DNAJ; structure genomics, struc 6e-07
1gh6_A114 Large T antigen; tumor suppressor, oncoprotein, an 1e-06
2qwo_B92 Putative tyrosine-protein phosphatase auxilin; cha 1e-06
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 2e-06
3uo3_A181 J-type CO-chaperone JAC1, mitochondrial; structura 3e-06
1fpo_A171 HSC20, chaperone protein HSCB; molecular chaperone 1e-05
3ag7_A106 Putative uncharacterized protein F9E10.5; J-domain 1e-05
3hho_A174 CO-chaperone protein HSCB homolog; structural geno 4e-05
1iur_A88 KIAA0730 protein; DNAJ like domain, riken structur 7e-05
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90 Back     alignment and structure
 Score = 68.2 bits (167), Expect = 1e-14
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 2/75 (2%)

Query: 189 AERFEEVTRIMGVEGDCPYDVIGANHNMSAENIKKRYWKLSLFVHPDKCPHPQAHQAFIK 248
            E+ + + RI   +    +D++G     S + + K Y KL++ +HPDKC  P +  AF  
Sbjct: 14  KEQADAIRRIRNSKD--SWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKA 71

Query: 249 LNKAFKELQDPEKRK 263
           +  A   L    K  
Sbjct: 72  VVNARTALLKNIKSG 86
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210 Back     alignment and structure
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77 Back     alignment and structure
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88 Back     alignment and structure
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78 Back     alignment and structure
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88 Back     alignment and structure
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112 Back     alignment and structure
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155 Back     alignment and structure
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79 Back     alignment and structure
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109 Back     alignment and structure
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103 Back     alignment and structure
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 Back     alignment and structure
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780 Back     alignment and structure
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94 Back     alignment and structure
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92 Back     alignment and structure
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109 Back     alignment and structure
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99 Back     alignment and structure
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182 Back     alignment and structure
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82 Back     alignment and structure
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92 Back     alignment and structure
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174 Back     alignment and structure
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329 Back     alignment and structure
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114 Back     alignment and structure
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92 Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 Back     alignment and structure
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181 Back     alignment and structure
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171 Back     alignment and structure
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106 Back     alignment and structure
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query514
1hdj_A77 Human HSP40, HDJ-1; molecular chaperone; NMR {Homo 99.76
2ctp_A78 DNAJ homolog subfamily B member 12; J-domain, chap 99.75
2cug_A88 Mkiaa0962 protein; DNAJ-like domain, structural ge 99.74
2ctw_A109 DNAJ homolog subfamily C member 5; J-domain, chape 99.74
2ctr_A88 DNAJ homolog subfamily B member 9; J-domain, chape 99.73
2dn9_A79 DNAJ homolog subfamily A member 3; J-domain, TID1, 99.73
2qsa_A109 DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s 99.72
2ej7_A82 HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati 99.72
2och_A73 Hypothetical protein DNJ-12; HSP40, J-domain, chap 99.72
1wjz_A94 1700030A21RIK protein; J-domain, DNAJ like protein 99.72
2yua_A99 Williams-beuren syndrome chromosome region 18 prot 99.72
2ctq_A112 DNAJ homolog subfamily C member 12; J-domain, chap 99.71
2ys8_A90 RAB-related GTP-binding protein RABJ; DNAJ domain, 99.69
2dmx_A92 DNAJ homolog subfamily B member 8; DNAJ J domain, 99.69
2lgw_A99 DNAJ homolog subfamily B member 2; J domain, HSJ1A 99.69
2o37_A92 Protein SIS1; HSP40, J-domain, cochaperone, APC900 99.68
1bq0_A103 DNAJ, HSP40; chaperone, heat shock, protein foldin 99.67
3apq_A210 DNAJ homolog subfamily C member 10; thioredoxin fo 99.62
2l6l_A155 DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, 99.61
3hho_A174 CO-chaperone protein HSCB homolog; structural geno 99.56
3lz8_A329 Putative chaperone DNAJ; structure genomics, struc 99.54
1fpo_A171 HSC20, chaperone protein HSCB; molecular chaperone 99.54
1gh6_A114 Large T antigen; tumor suppressor, oncoprotein, an 99.52
3bvo_A207 CO-chaperone protein HSCB, mitochondrial precurso; 99.5
2pf4_E174 Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, 99.49
1iur_A88 KIAA0730 protein; DNAJ like domain, riken structur 99.49
1n4c_A182 Auxilin; four helix bundle, protein binding; NMR { 99.48
1faf_A79 Large T antigen; J domain, HPD motif, anti-paralle 99.48
3ag7_A106 Putative uncharacterized protein F9E10.5; J-domain 99.46
3uo3_A181 J-type CO-chaperone JAC1, mitochondrial; structura 99.46
2qwo_B92 Putative tyrosine-protein phosphatase auxilin; cha 99.46
2guz_A71 Mitochondrial import inner membrane translocase su 99.37
3apo_A 780 DNAJ homolog subfamily C member 10; PDI family, th 99.36
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 98.79
2guz_B65 Mitochondrial import inner membrane translocase su 98.22
2pzi_A681 Probable serine/threonine-protein kinase PKNG; ATP 83.6
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Back     alignment and structure
Probab=99.76  E-value=8.4e-19  Score=143.38  Aligned_cols=68  Identities=32%  Similarity=0.516  Sum_probs=65.6

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHHHHcCChhHHHHHHHhhhh
Q 010253          204 DCPYDVIGANHNMSAENIKKRYWKLSLFVHPDKCPHPQAHQAFIKLNKAFKELQDPEKRKALDEKIKL  271 (514)
Q Consensus       204 ~d~Y~VLGV~~~As~~eIKkAYrkLal~~HPDK~~~~~A~e~F~~I~~AY~vLsDp~kR~~YD~~~~~  271 (514)
                      .|||+||||+++++.++||++|++|+++||||+++.+.+.+.|+.|++||++|+||.+|..||.++..
T Consensus         3 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   70 (77)
T 1hdj_A            3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEE   70 (77)
T ss_dssp             CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGG
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHccc
Confidence            69999999999999999999999999999999999888999999999999999999999999998864
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Back     alignment and structure
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Back     alignment and structure
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Back     alignment and structure
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Back     alignment and structure
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Back     alignment and structure
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Back     alignment and structure
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Back     alignment and structure
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Back     alignment and structure
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Back     alignment and structure
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Back     alignment and structure
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Back     alignment and structure
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Back     alignment and structure
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Back     alignment and structure
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Back     alignment and structure
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Back     alignment and structure
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Back     alignment and structure
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Back     alignment and structure
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Back     alignment and structure
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Back     alignment and structure
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 514
d1nz6a_98 a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T 4e-10
d1hdja_77 a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9 2e-09
d1wjza_94 a.2.3.1 (A:) CSL-type zinc finger-containing prote 3e-08
d1fpoa176 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma 6e-08
d1xbla_75 a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain 1e-07
d1fafa_79 a.2.3.1 (A:) Large T antigen, the N-terminal J dom 2e-06
d1iura_88 a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human 6e-05
d1gh6a_114 a.2.3.1 (A:) Large T antigen, the N-terminal J dom 4e-04
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98 Back     information, alignment and structure

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.6 bits (131), Expect = 4e-10
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 202 EGDCPYDVIGANHNMSAENIKKRYWKLSLFVHPDKCPHPQAHQA----FIKLNKAFKELQ 257
            G+  +  +G    ++ E +KK Y K  L VHPDK       Q     F++LN A+ E +
Sbjct: 31  AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFE 90

Query: 258 DPEKRKA 264
           +  ++  
Sbjct: 91  NQGQKPL 97
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77 Back     information, alignment and structure
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94 Back     information, alignment and structure
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76 Back     information, alignment and structure
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75 Back     information, alignment and structure
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79 Back     information, alignment and structure
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query514
d1xbla_75 DnaJ chaperone, N-terminal (J) domain {Escherichia 99.8
d1hdja_77 HSP40 {Human (Homo sapiens) [TaxId: 9606]} 99.78
d1wjza_94 CSL-type zinc finger-containing protein 3 (J-domai 99.71
d1gh6a_114 Large T antigen, the N-terminal J domain {Simian v 99.66
d1fpoa176 HSC20 (HSCB), N-terminal (J) domain {Escherichia c 99.55
d1fafa_79 Large T antigen, the N-terminal J domain {Murine p 99.53
d1nz6a_98 Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} 99.47
d1iura_88 Hypothetical protein KIAA0730 {Human (Homo sapiens 99.4
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=2.9e-20  Score=150.43  Aligned_cols=69  Identities=26%  Similarity=0.482  Sum_probs=64.9

Q ss_pred             CCCccccccCCCCCCHHHHHHHHHHHHHhhCCCCCC-ChhHHHHHHHHHHHHHHcCChhHHHHHHHhhhh
Q 010253          203 GDCPYDVIGANHNMSAENIKKRYWKLSLFVHPDKCP-HPQAHQAFIKLNKAFKELQDPEKRKALDEKIKL  271 (514)
Q Consensus       203 ~~d~Y~VLGV~~~As~~eIKkAYrkLal~~HPDK~~-~~~A~e~F~~I~~AY~vLsDp~kR~~YD~~~~~  271 (514)
                      ..|||+||||+++||.++||+||++++++||||+++ .+.+.+.|+.|++||+||+||.+|..||.+|..
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~   71 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHA   71 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHHTTS
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHhCcc
Confidence            479999999999999999999999999999999998 467888999999999999999999999999864
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Back     information, alignment and structure
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Back     information, alignment and structure
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure