Citrus Sinensis ID: 010256
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 514 | 2.2.26 [Sep-21-2011] | |||||||
| Q39247 | 501 | Serine/threonine protein | yes | no | 0.968 | 0.994 | 0.787 | 0.0 | |
| Q0E2P1 | 525 | Serine/threonine protein | yes | no | 0.963 | 0.942 | 0.789 | 0.0 | |
| A2X2K3 | 525 | Serine/threonine protein | N/A | no | 0.963 | 0.942 | 0.789 | 0.0 | |
| Q38821 | 513 | Serine/threonine protein | no | no | 0.988 | 0.990 | 0.759 | 0.0 | |
| Q5Z8Z7 | 581 | Serine/threonine protein | no | no | 0.982 | 0.869 | 0.759 | 0.0 | |
| Q12702 | 463 | Protein phosphatase PP2A | yes | no | 0.863 | 0.958 | 0.503 | 1e-135 | |
| Q5ZIY5 | 451 | Serine/threonine-protein | yes | no | 0.842 | 0.960 | 0.502 | 1e-134 | |
| Q6DIY3 | 447 | Serine/threonine-protein | yes | no | 0.852 | 0.979 | 0.497 | 1e-133 | |
| Q7ZX64 | 447 | Serine/threonine-protein | N/A | no | 0.852 | 0.979 | 0.489 | 1e-132 | |
| Q66LE6 | 453 | Serine/threonine-protein | yes | no | 0.842 | 0.955 | 0.502 | 1e-132 |
| >sp|Q39247|2ABB_ARATH Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Arabidopsis thaliana GN=PP2AB2 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 847 bits (2189), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/514 (78%), Positives = 450/514 (87%), Gaps = 16/514 (3%)
Query: 3 NGGGSSEAAAQP--LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVV 60
NGG + + P LEW+FSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVV
Sbjct: 2 NGGDDAATSGPPPSLEWRFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVV 61
Query: 61 LFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW 120
LFERTDT+D+GG R+DLE DY + RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW
Sbjct: 62 LFERTDTKDHGGSRKDLEQTDYPV-RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW 120
Query: 121 CQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM 180
CQ AN AL+LLSTNDKTIK WKVQEKK+KK+ + N+ P S S IP +
Sbjct: 121 CQPANGALFLLSTNDKTIKYWKVQEKKIKKISEMNIDP-----------SESSNIPPQLV 169
Query: 181 ANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSIS 240
NG ++ S D SFPPGG+ SLRLPVVVTSQETNLVA CRR+YAHAHDYHINSIS
Sbjct: 170 TNGLPADKGHDYLSKDFSFPPGGIPSLRLPVVVTSQETNLVARCRRVYAHAHDYHINSIS 229
Query: 241 NNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY 300
N+SDGETFISADDLR+NLWNLEISNQSFNIVDVKP NMEDLTEVITSAEFHP HCNMLAY
Sbjct: 230 NSSDGETFISADDLRVNLWNLEISNQSFNIVDVKPTNMEDLTEVITSAEFHPIHCNMLAY 289
Query: 301 SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD 360
SSSKGSIRLIDMRQSALCD+H+KLFEE EAPG+RSFFTEIIASISDIKF+++GR+ILSRD
Sbjct: 290 SSSKGSIRLIDMRQSALCDSHTKLFEEPEAPGSRSFFTEIIASISDIKFSKDGRYILSRD 349
Query: 361 YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 420
YMTLKLWDINMDSGPVA++QVHEHLRP+LCDLYENDSIFDKFECCLSGDG RVATGSYSN
Sbjct: 350 YMTLKLWDINMDSGPVASYQVHEHLRPRLCDLYENDSIFDKFECCLSGDGLRVATGSYSN 409
Query: 421 LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANG 480
LFRVFG S+GS E+ TLEASKNPMRRQ+QTP+RPSR +GS++ VVRR G+++ +ANG
Sbjct: 410 LFRVFGASQGSTEAATLEASKNPMRRQIQTPARPSRSIGSMTRVVRR--GSESPGTEANG 467
Query: 481 NAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 514
NA+DF+ KLLH+AWHP+ENSIACAA+NSLYMYYA
Sbjct: 468 NAYDFTTKLLHMAWHPTENSIACAAANSLYMYYA 501
|
The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0E2P1|2ABB_ORYSJ Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Oryza sativa subsp. japonica GN=Os02g0224200 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 819 bits (2116), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/499 (78%), Positives = 444/499 (88%), Gaps = 4/499 (0%)
Query: 16 EWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRR 75
EW+F+QVFGER AGE+VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTD+RD+ R
Sbjct: 31 EWRFAQVFGERAAGEDVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDSRDSAS-RS 89
Query: 76 DLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTND 135
+LE DY ++RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI+WCQ+AN+AL+LLSTND
Sbjct: 90 ELERQDYPIARHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANNALFLLSTND 149
Query: 136 KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195
KTIK WKVQE+KVK++ N++ +++GNG S S+ ++ + NGGC E+ + +N
Sbjct: 150 KTIKYWKVQERKVKRISVMNLNTSQSSGNGTTSSSSSSSS-RAILPNGGCSEKLYNFPNN 208
Query: 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLR 255
D FPPGG +SLRLPVVVT Q+ NLV CRR+Y+HAHDYHINSISNNSDGET+ISADDLR
Sbjct: 209 DLLFPPGGCTSLRLPVVVTGQDLNLVPRCRRVYSHAHDYHINSISNNSDGETYISADDLR 268
Query: 256 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 315
INLWNLEISNQSFNIVDVKPANMEDLTEVIT AEFHPTHCN LAYSSSKGSIRLID+RQS
Sbjct: 269 INLWNLEISNQSFNIVDVKPANMEDLTEVITCAEFHPTHCNTLAYSSSKGSIRLIDLRQS 328
Query: 316 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGP 375
ALCD H+KLFEE EAPG+RSFFTEIIAS+SDIKFAR+GRHILSRDYMTLKLWDINMDSGP
Sbjct: 329 ALCDNHAKLFEEHEAPGSRSFFTEIIASVSDIKFARDGRHILSRDYMTLKLWDINMDSGP 388
Query: 376 VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAEST 435
VATFQVHE+LRPKLCDLYENDSIFDKFECCLSGDG RVATGSYSNLFRVFGC+ GSAE+T
Sbjct: 389 VATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCTPGSAEAT 448
Query: 436 TLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWH 495
TLEAS+NPMRRQV P+RP+R L SL+ VRR G +N +DANGN++D S KLLHLAWH
Sbjct: 449 TLEASRNPMRRQVANPTRPARTLTSLTRAVRR--GGENPGVDANGNSYDLSTKLLHLAWH 506
Query: 496 PSENSIACAASNSLYMYYA 514
P+ENSIACAA+NSLYMYYA
Sbjct: 507 PTENSIACAAANSLYMYYA 525
|
The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|A2X2K3|2ABB_ORYSI Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Oryza sativa subsp. indica GN=OsI_006296 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 819 bits (2115), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/499 (78%), Positives = 444/499 (88%), Gaps = 4/499 (0%)
Query: 16 EWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRR 75
EW+F+QVFGER AGE+VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTD+RD+ R
Sbjct: 31 EWRFAQVFGERAAGEDVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDSRDSAS-RS 89
Query: 76 DLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTND 135
+LE DY ++RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI+WCQ+AN+AL+LLSTND
Sbjct: 90 ELERQDYPIARHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANNALFLLSTND 149
Query: 136 KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195
KTIK WKVQE+KVK++ N++ +++GNG S S+ ++ + NGGC E+ + +N
Sbjct: 150 KTIKYWKVQERKVKRISVMNLNTSQSSGNGTTSSSSSSSS-RAILPNGGCSEKLYNFPNN 208
Query: 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLR 255
D FPPGG +SLRLPVVVT Q+ NLV CRR+Y+HAHDYHINSISNNSDGET+ISADDLR
Sbjct: 209 DLLFPPGGCTSLRLPVVVTGQDLNLVPRCRRVYSHAHDYHINSISNNSDGETYISADDLR 268
Query: 256 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 315
INLWNLEISNQSFNIVDVKPANMEDLTEVIT AEFHPTHCN LAYSSSKGSIRLID+RQS
Sbjct: 269 INLWNLEISNQSFNIVDVKPANMEDLTEVITCAEFHPTHCNTLAYSSSKGSIRLIDLRQS 328
Query: 316 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGP 375
ALCD H+KLFEE EAPG+RSFFTEIIAS+SDIKFAR+GRHILSRDYMTLKLWDINMDSGP
Sbjct: 329 ALCDNHAKLFEEHEAPGSRSFFTEIIASVSDIKFARDGRHILSRDYMTLKLWDINMDSGP 388
Query: 376 VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAEST 435
VATFQVHE+LRPKLCDLYENDSIFDKFECCLSGDG RVATGSYSNLFRVFGC+ GSAE+T
Sbjct: 389 VATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCTPGSAEAT 448
Query: 436 TLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWH 495
TLEAS+NPMRRQV P+RP+R L SL+ VRR G +N +DANGN++D S KLLHLAWH
Sbjct: 449 TLEASRNPMRRQVANPTRPARTLTSLTRAVRR--GGENPGVDANGNSYDLSTKLLHLAWH 506
Query: 496 PSENSIACAASNSLYMYYA 514
P+ENSIACAA+NSLYMYYA
Sbjct: 507 PTENSIACAAANSLYMYYA 525
|
The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q38821|2ABA_ARATH Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Arabidopsis thaliana GN=PP2AB1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 804 bits (2076), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/516 (75%), Positives = 439/516 (85%), Gaps = 8/516 (1%)
Query: 3 NGGGSSEAAAQ----PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGR 58
NGG AA+ PLEW+FSQVFGER+AGEEVQEVDIISAIEFD SG+HLATGDRGGR
Sbjct: 2 NGGDEVVAASADPSLPLEWRFSQVFGERSAGEEVQEVDIISAIEFDNSGNHLATGDRGGR 61
Query: 59 VVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 118
VVLFERTDT ++ G RR+LE DY + RHPEFRYKTEFQSH+PEFDYLKSLEIEEKINKI
Sbjct: 62 VVLFERTDTNNSSGTRRELEEADYPL-RHPEFRYKTEFQSHDPEFDYLKSLEIEEKINKI 120
Query: 119 RWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS 178
RWCQ+AN AL+LLSTNDKTIK WKVQ+KK+KK+ D N P + GNG + S S I S
Sbjct: 121 RWCQTANGALFLLSTNDKTIKFWKVQDKKIKKICDMNSDPSRTVGNGTVASSSNSNITNS 180
Query: 179 YMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINS 238
+ NGG E N ND S P GG+SSLRLPVVVTS E++ VA CRR+YAHAHDYHINS
Sbjct: 181 CLVNGGVSEVN-NSLCNDFSLPAGGISSLRLPVVVTSHESSPVARCRRVYAHAHDYHINS 239
Query: 239 ISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNML 298
ISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPA MEDL+EVITSAEFHPTHCNML
Sbjct: 240 ISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPAKMEDLSEVITSAEFHPTHCNML 299
Query: 299 AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 358
AYSSSKGSIRLID+RQSALCD+HSKLFEE E G +SFFTEIIAS+SDIKFA+ GR++LS
Sbjct: 300 AYSSSKGSIRLIDLRQSALCDSHSKLFEEPEQAGPKSFFTEIIASVSDIKFAKEGRYLLS 359
Query: 359 RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 418
RDYMTLKLWDINMD+GPVATFQVHE+L+PKLCDLYENDSIFDKFECC+SG+G R ATGSY
Sbjct: 360 RDYMTLKLWDINMDAGPVATFQVHEYLKPKLCDLYENDSIFDKFECCISGNGLRAATGSY 419
Query: 419 SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDA 478
SNLFRVFG + GS E+ TLEAS+NPMRR V PSRPSR L S++ VV R G+++ +D
Sbjct: 420 SNLFRVFGVAPGSTETATLEASRNPMRRHVPIPSRPSRALSSITRVVSR--GSESPGVDG 477
Query: 479 NGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 514
N NA D++ KLLHLAWHP+ENSIACAA+NSLYMYYA
Sbjct: 478 NTNALDYTTKLLHLAWHPNENSIACAAANSLYMYYA 513
|
The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5Z8Z7|2ABA_ORYSJ Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Oryza sativa subsp. japonica GN=Os06g0563300 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 799 bits (2063), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/512 (75%), Positives = 435/512 (84%), Gaps = 7/512 (1%)
Query: 4 GGGSSEAAAQP-LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLF 62
G SS P +EW+F+QVFGER AGE+VQEVDIISAIEFDKSGDHLATGDRGGRVVLF
Sbjct: 17 AGSSSAQQGHPTMEWRFAQVFGERAAGEDVQEVDIISAIEFDKSGDHLATGDRGGRVVLF 76
Query: 63 ERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQ 122
ERTD RDN RR++E D ++RHPEFRYK+EFQSHEPEFDYLKSLEIEEKINKIRWCQ
Sbjct: 77 ERTDARDNAS-RREMERQDAPITRHPEFRYKSEFQSHEPEFDYLKSLEIEEKINKIRWCQ 135
Query: 123 SANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN 182
+AN++L LLSTNDKTIK WKVQEKKVK+V N+ S S+ + + N
Sbjct: 136 TANNSLSLLSTNDKTIKYWKVQEKKVKQVSVMNLDSRSVGTGTSSSASTSSS--RGLLPN 193
Query: 183 GGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNN 242
GGC +++ ++D FPPGG SLRLPVVV SQ+ NLVA CRR+YAHAHDYHINSIS N
Sbjct: 194 GGCSDKS-SFLNSDILFPPGGYPSLRLPVVVASQDVNLVARCRRVYAHAHDYHINSISTN 252
Query: 243 SDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS 302
SDGET+ISADDLRINLWNLEI+NQSFNIVDVKP NMEDLTEVIT AEFHPTHCN LAYSS
Sbjct: 253 SDGETYISADDLRINLWNLEINNQSFNIVDVKPPNMEDLTEVITCAEFHPTHCNTLAYSS 312
Query: 303 SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYM 362
SKGSIRLID+RQSALCD HSK+FEE EAPG+RSFFTEIIASISDIKF+R+GR+ILSRDYM
Sbjct: 313 SKGSIRLIDLRQSALCDNHSKIFEEHEAPGSRSFFTEIIASISDIKFSRDGRYILSRDYM 372
Query: 363 TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 422
TLKLWD+NMDSGPV+TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG VATGSY NLF
Sbjct: 373 TLKLWDLNMDSGPVSTFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGLHVATGSYGNLF 432
Query: 423 RVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNA 482
RVFGC+ GS E+TTLEAS+NPMRRQ+ P+RP+R L SL+ VRR G +N +DANGN+
Sbjct: 433 RVFGCTPGSTEATTLEASRNPMRRQIVNPTRPTRTLTSLARGVRR--GGENQGVDANGNS 490
Query: 483 FDFSMKLLHLAWHPSENSIACAASNSLYMYYA 514
FDFS KLLHLAWHP+ENSIACAA+NSLYMYYA
Sbjct: 491 FDFSTKLLHLAWHPTENSIACAAANSLYMYYA 522
|
The B regulatory subunit may modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q12702|2ABA_SCHPO Protein phosphatase PP2A regulatory subunit B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pab1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 482 bits (1240), Expect = e-135, Method: Compositional matrix adjust.
Identities = 254/504 (50%), Positives = 329/504 (65%), Gaps = 60/504 (11%)
Query: 16 EWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRR 75
+WKF+Q FG++ E++ E DIISA+EFD +GD+LATGD+GGRVVLFER ++
Sbjct: 10 QWKFAQCFGDKGDVEDITEADIISAVEFDHTGDYLATGDKGGRVVLFERNHSK------- 62
Query: 76 DLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTND 135
+ E+++ TEFQSHEPEFDYLKSLEIEEKINKIRWC+ N A +LLSTND
Sbjct: 63 ----------KGCEYKFFTEFQSHEPEFDYLKSLEIEEKINKIRWCKRTNRAHFLLSTND 112
Query: 136 KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195
KTIKLWK+ EK +K V + N+ + + P+ G
Sbjct: 113 KTIKLWKLYEKNLKVVAENNL---SDSFHSPMQG-------------------------- 143
Query: 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLR 255
P S LRLP + + + A RR+YA+AH YHINSIS NSD ET+ISADDLR
Sbjct: 144 ----PLTTPSQLRLPRL-NHHDMIIAAYPRRVYANAHAYHINSISVNSDAETYISADDLR 198
Query: 256 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 315
INLWNL IS+ SFNIVD+KP NME+LTEVITSAEFHP +CN L YSSSKG+I+L+D+RQS
Sbjct: 199 INLWNLSISDHSFNIVDIKPENMEELTEVITSAEFHPINCNHLMYSSSKGNIKLLDLRQS 258
Query: 316 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGP 375
ALCD KLFE+QE ++SFF+EII+SISD+KF++NGR+ILSRDY+TLK+WD+NM+ P
Sbjct: 259 ALCDNPCKLFEDQEDQDSKSFFSEIISSISDVKFSQNGRYILSRDYLTLKIWDVNMEKAP 318
Query: 376 VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE---GSA 432
V T +H+ LR KLCDLYEND IFDKFEC SGD V +GSYSN F ++ G
Sbjct: 319 VKTIPLHDVLRSKLCDLYENDCIFDKFECTFSGDDKHVLSGSYSNNFGIYPTDSSLPGDR 378
Query: 433 ESTTLEASKNPMRRQV----QTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMK 488
L+A K R + P + + G+ + LD + D++ K
Sbjct: 379 GQIVLQADKAAFRARKSAANNVPKLNAVKNNDWRSQPQAAMGSASVGLDPDN--LDYNKK 436
Query: 489 LLHLAWHPSENSIACAASNSLYMY 512
+LH +WHP E+S+A AA+N+L+++
Sbjct: 437 ILHASWHPFEDSVAIAATNNLFVF 460
|
Phosphatase 2A affects a variety of biological processes in the cell such as transcription, cell cycle progression and cellular morphogenesis, and provides an initial identification of critical substrates for this phosphatase. The regulatory subunit may direct the catalytic subunit to distinct, albeit overlapping, subsets of substrates. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q5ZIY5|2ABD_CHICK Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform OS=Gallus gallus GN=PPP2R2D PE=2 SV=1 | Back alignment and function description |
|---|
Score = 478 bits (1229), Expect = e-134, Method: Compositional matrix adjust.
Identities = 250/498 (50%), Positives = 325/498 (65%), Gaps = 65/498 (13%)
Query: 15 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQR 74
+W FSQV G E+V E DIIS +EF+ SGD LATGD+GGRVV+F+R +
Sbjct: 14 FQWCFSQVQG--AVDEDVAEADIISTVEFNYSGDLLATGDKGGRVVIFQREQENKSRPHS 71
Query: 75 RDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTN 134
R E+ + FQSHEPEFDYLKSLEIEEKINKIRW N+A +LLSTN
Sbjct: 72 RG------------EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAHFLLSTN 119
Query: 135 DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194
DKTIKLWK+ E+ K+ +N+ E P
Sbjct: 120 DKTIKLWKISERD-KRAEGYNLKDEDGRLRDPF--------------------------- 151
Query: 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDL 254
+++LR+P++ + + A RRI+A+AH YHINSIS NSD ET++SADDL
Sbjct: 152 --------KITALRVPIL-KPMDLMVEASPRRIFANAHTYHINSISVNSDHETYLSADDL 202
Query: 255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 314
RINLW+LEI+++SFNIVD+KPANME+LTEVIT+AEFHP HCN+ YSSSKG+IRL DMR
Sbjct: 203 RINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRS 262
Query: 315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSG 374
SALCD HSK FEE E P +RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM++
Sbjct: 263 SALCDRHSKFFEEPEDPSSRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENR 322
Query: 375 PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES 434
PV T+QVHE+LR KLC LYEND IFDKFECC +G G + TGSY+N FR+F +
Sbjct: 323 PVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDGAIMTGSYNNFFRMFD--RNTRRD 380
Query: 435 TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAW 494
TLEAS R+ P +P +G R+ + N ++ DF+ K+LH AW
Sbjct: 381 ITLEAS-----RESSKPRAILKPRKVCTGGKRKKD-------EINVDSLDFNKKILHTAW 428
Query: 495 HPSENSIACAASNSLYMY 512
HP EN IA AA+N+LY++
Sbjct: 429 HPMENIIAVAATNNLYIF 446
|
B regulatory subunit of protein phosphatase 2A (PP2A) that plays a key role in cell cycle by controlling mitosis entry and exit. The activity of PP2A complexes containing PPP2R2D (PR55-delta) fluctuate during the cell cycle: the activity is high in interphase and low in mitosis. During mitosis, activity of PP2A is inhibited via interaction with phosphorylated ENSA and ARPP19 inhibitors. Within the PP2A complexes, the B regulatory subunits modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment. Gallus gallus (taxid: 9031) |
| >sp|Q6DIY3|2ABD_XENTR Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform OS=Xenopus tropicalis GN=ppp2r2d PE=2 SV=1 | Back alignment and function description |
|---|
Score = 476 bits (1224), Expect = e-133, Method: Compositional matrix adjust.
Identities = 253/509 (49%), Positives = 330/509 (64%), Gaps = 71/509 (13%)
Query: 4 GGGSSEAAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFE 63
GGG+ +W FSQV G E+V E DIIS +EF+ SGD LATGD+GGRVV+F+
Sbjct: 5 GGGND------FQWCFSQVKG--AIDEDVAEADIISTVEFNCSGDLLATGDKGGRVVIFQ 56
Query: 64 RTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQS 123
R + R E+ + FQSHEPEFDYLKSLEIEEKINKIRW
Sbjct: 57 REQENKSRPHSRG------------EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104
Query: 124 ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183
N+A +LLSTNDKTIKLWK+ E+ K+V +N+ + P
Sbjct: 105 QNAAHFLLSTNDKTIKLWKISERD-KRVEGYNLKDDDGRLRDPF---------------- 147
Query: 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS 243
++SLR+P++ + + A RRI+A+AH YHINSIS NS
Sbjct: 148 -------------------RITSLRVPIL-KPMDLMVEASPRRIFANAHTYHINSISVNS 187
Query: 244 DGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS 303
D ET++SADDLRINLW+LEI+++SFNIVD+KPANME+LTEVIT+AEFHP HCN+ YSSS
Sbjct: 188 DHETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPHHCNVFVYSSS 247
Query: 304 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMT 363
KG+IRL DMR SALCD HSK FEE E P +RSFF+EII+SISD+KF+ +GR++++RDY++
Sbjct: 248 KGTIRLCDMRDSALCDRHSKFFEEPEDPSSRSFFSEIISSISDVKFSNSGRYMMTRDYLS 307
Query: 364 LKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 423
+K+WD+NM+S PV T+QVHE+LR KLC LYEND IFDKFECC +G + TGSY+N FR
Sbjct: 308 VKVWDLNMESRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSAIMTGSYNNFFR 367
Query: 424 VFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAF 483
+F + TLEAS R+ P +P +G R+ + N ++
Sbjct: 368 MF--DRNTRRDITLEAS-----RESSKPRAILKPRKVCTGGKRKKD-------EINVDSL 413
Query: 484 DFSMKLLHLAWHPSENSIACAASNSLYMY 512
DF+ K+LH AWHP++N IA AA+N+LY++
Sbjct: 414 DFNKKILHTAWHPTDNIIAVAATNNLYIF 442
|
B regulatory subunit of protein phosphatase 2A (PP2A) that plays a key role in cell cycle by controlling mitosis entry and exit. The activity of PP2A complexes containing ppp2r2d (PR55-delta) fluctuate during the cell cycle: the activity is high in interphase and low in mitosis. During mitosis, activity of PP2A is inhibited via interaction with phosphorylated ensa and arpp19 inhibitors. PP2A complexes containing ppp2r2d (PR55-delta) also regulate the activity of TGF-beta/Activin/Nodal signaling by restricting receptor activity. Within the PP2A complexes, the B regulatory subunits modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment. Xenopus tropicalis (taxid: 8364) |
| >sp|Q7ZX64|2ABD_XENLA Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform OS=Xenopus laevis GN=ppp2r2d PE=1 SV=1 | Back alignment and function description |
|---|
Score = 472 bits (1214), Expect = e-132, Method: Compositional matrix adjust.
Identities = 249/509 (48%), Positives = 330/509 (64%), Gaps = 71/509 (13%)
Query: 4 GGGSSEAAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFE 63
GGG+ +W FSQV G E+V E DIIS +EF+ SG+ LATGD+GGRVV+F+
Sbjct: 5 GGGND------FQWCFSQVKG--AIDEDVAEADIISTVEFNCSGELLATGDKGGRVVIFQ 56
Query: 64 RTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQS 123
R + R E+ + FQSHEPEFDYLKSLEIEEKINKIRW
Sbjct: 57 REQENKSRPHSRG------------EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104
Query: 124 ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183
N+A +LLSTNDKTIKLWK+ E+ K+V +N+ + P
Sbjct: 105 QNAANFLLSTNDKTIKLWKISERD-KRVEGYNLKDDDGRLRDPF---------------- 147
Query: 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS 243
++SLR+P++ + + A RRI+A+AH YHINSIS NS
Sbjct: 148 -------------------RITSLRVPIL-KPMDLMVEASPRRIFANAHTYHINSISVNS 187
Query: 244 DGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS 303
D +T++SADDLR+NLW+LEI+++SFNIVD+KPANME+LTEVIT+AEFHP HC+M YSSS
Sbjct: 188 DHQTYLSADDLRVNLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPHHCHMFVYSSS 247
Query: 304 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMT 363
KG+IRL DMR +ALCD HSK FEE E P +RSFF+EII+SISD+KF+ +GR++++RDY++
Sbjct: 248 KGTIRLCDMRDAALCDRHSKFFEEPEDPSSRSFFSEIISSISDVKFSHSGRYMMTRDYLS 307
Query: 364 LKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 423
+K+WD+NM+S PV T+QVHE+LR KLC LYEND IFDKFECC +G + TGSY+N FR
Sbjct: 308 VKVWDLNMESRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSSIMTGSYNNFFR 367
Query: 424 VFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAF 483
+F + TLEAS R+ P +P +G R+ + N ++
Sbjct: 368 MF--DRNTRRDITLEAS-----RESSKPRATLKPRKVCTGGKRKKD-------EINVDSL 413
Query: 484 DFSMKLLHLAWHPSENSIACAASNSLYMY 512
DF+ K+LH AWHP++N IA AA+N+LY++
Sbjct: 414 DFNKKILHTAWHPTDNIIAVAATNNLYIF 442
|
B regulatory subunit of protein phosphatase 2A (PP2A) that plays a key role in cell cycle by controlling mitosis entry and exit. The activity of PP2A complexes containing ppp2r2d (PR55-delta) fluctuate during the cell cycle: the activity is high in interphase and low in mitosis. During mitosis, activity of PP2A is inhibited via interaction with phosphorylated ensa and arpp19 inhibitors. PP2A complexes containing ppp2r2d (PR55-delta) also regulate the activity of TGF-beta/Activin/Nodal signaling by restricting receptor activity. Within the PP2A complexes, the B regulatory subunits modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment. Xenopus laevis (taxid: 8355) |
| >sp|Q66LE6|2ABD_HUMAN Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform OS=Homo sapiens GN=PPP2R2D PE=1 SV=1 | Back alignment and function description |
|---|
Score = 471 bits (1211), Expect = e-132, Method: Compositional matrix adjust.
Identities = 250/498 (50%), Positives = 323/498 (64%), Gaps = 65/498 (13%)
Query: 15 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQR 74
+W FSQV G E+V E DIIS +EF+ SGD LATGD+GGRVV+F+R +
Sbjct: 16 FQWCFSQVKG--AIDEDVAEADIISTVEFNYSGDLLATGDKGGRVVIFQREQENKSRPHS 73
Query: 75 RDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTN 134
R E+ + FQSHEPEFDYLKSLEIEEKINKIRW N+A +LLSTN
Sbjct: 74 RG------------EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAHFLLSTN 121
Query: 135 DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194
DKTIKLWK+ E+ K+ +N+ E P
Sbjct: 122 DKTIKLWKISERD-KRAEGYNLKDEDGRLRDPF--------------------------- 153
Query: 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDL 254
+++LR+P++ + + A RRI+A+AH YHINSIS NSD ET++SADDL
Sbjct: 154 --------RITALRVPIL-KPMDLMVEASPRRIFANAHTYHINSISVNSDHETYLSADDL 204
Query: 255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 314
RINLW+LEI+++SFNIVD+KPANME+LTEVIT+AEFHP CN+ YSSSKG+IRL DMR
Sbjct: 205 RINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPHQCNVFVYSSSKGTIRLCDMRS 264
Query: 315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSG 374
SALCD HSK FEE E P +RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM+S
Sbjct: 265 SALCDRHSKFFEEPEDPSSRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMESR 324
Query: 375 PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES 434
PV T QVHE+LR KLC LYEND IFDKFECC +G + TGSY+N FR+F +
Sbjct: 325 PVETHQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSAIMTGSYNNFFRMFD--RDTRRD 382
Query: 435 TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAW 494
TLEAS R+ P +P +G RR D ++D + DF+ K+LH AW
Sbjct: 383 VTLEAS-----RESSKPRASLKPRKVCTGGKRR---KDEISVD----SLDFNKKILHTAW 430
Query: 495 HPSENSIACAASNSLYMY 512
HP +N IA AA+N+LY++
Sbjct: 431 HPVDNVIAVAATNNLYIF 448
|
B regulatory subunit of protein phosphatase 2A (PP2A) that plays a key role in cell cycle by controlling mitosis entry and exit. The activity of PP2A complexes containing PPP2R2D (PR55-delta) fluctuate during the cell cycle: the activity is high in interphase and low in mitosis. During mitosis, activity of PP2A is inhibited via interaction with phosphorylated ENSA and ARPP19 inhibitors. Within the PP2A complexes, the B regulatory subunits modulate substrate selectivity and catalytic activity, and also may direct the localization of the catalytic enzyme to a particular subcellular compartment. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 514 | ||||||
| 224088860 | 521 | predicted protein [Populus trichocarpa] | 0.964 | 0.952 | 0.852 | 0.0 | |
| 224142870 | 517 | predicted protein [Populus trichocarpa] | 0.990 | 0.984 | 0.828 | 0.0 | |
| 356556686 | 514 | PREDICTED: serine/threonine protein phos | 0.964 | 0.964 | 0.840 | 0.0 | |
| 11094369 | 515 | Ser/Thr specific protein phosphatase 2A | 0.990 | 0.988 | 0.804 | 0.0 | |
| 356550460 | 514 | PREDICTED: serine/threonine protein phos | 0.988 | 0.988 | 0.820 | 0.0 | |
| 225442335 | 512 | PREDICTED: serine/threonine protein phos | 0.964 | 0.968 | 0.848 | 0.0 | |
| 224128562 | 512 | predicted protein [Populus trichocarpa] | 0.990 | 0.994 | 0.823 | 0.0 | |
| 18394522 | 501 | Protein phosphatase 2A, regulatory subun | 0.968 | 0.994 | 0.787 | 0.0 | |
| 297738699 | 508 | unnamed protein product [Vitis vinifera] | 0.982 | 0.994 | 0.791 | 0.0 | |
| 30685484 | 500 | Protein phosphatase 2A, regulatory subun | 0.966 | 0.994 | 0.785 | 0.0 |
| >gi|224088860|ref|XP_002308570.1| predicted protein [Populus trichocarpa] gi|222854546|gb|EEE92093.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 887 bits (2292), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/500 (85%), Positives = 458/500 (91%), Gaps = 4/500 (0%)
Query: 15 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQR 74
LEWKF+QVFGERTAGEEVQEVDIISAIEFD++GDHLATGDRGGRVVLFERTDTRD+GG R
Sbjct: 26 LEWKFAQVFGERTAGEEVQEVDIISAIEFDRTGDHLATGDRGGRVVLFERTDTRDHGGNR 85
Query: 75 RDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTN 134
RDLE MD+ ++RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI+WCQSAN AL+LLSTN
Sbjct: 86 RDLERMDFPINRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQSANGALFLLSTN 145
Query: 135 DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194
DKTIK WKVQEKKVKK+ D NV P KAAGNGP+ G +S K Y ANGGC ++ G S
Sbjct: 146 DKTIKFWKVQEKKVKKICDMNVDPAKAAGNGPLVGPSISTSSKPYTANGGCLDKPLGL-S 204
Query: 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDL 254
ND SFPPGGVSSL LPV+ TS ET+LV CRRIYAHAHDYHINSISNNSDGETFISADDL
Sbjct: 205 NDFSFPPGGVSSLHLPVL-TSIETSLVPRCRRIYAHAHDYHINSISNNSDGETFISADDL 263
Query: 255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 314
RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS+GSIRL+DMRQ
Sbjct: 264 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSRGSIRLVDMRQ 323
Query: 315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSG 374
SALCD+HSKLFEEQE PG+RSFFTEIIASISDIKFA++GR+ILSRDYMTLKLWDINMDSG
Sbjct: 324 SALCDSHSKLFEEQEVPGSRSFFTEIIASISDIKFAKDGRYILSRDYMTLKLWDINMDSG 383
Query: 375 PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES 434
PV+TFQVHE+LRPKLCDLYENDSIFDKFECCLSGDG RVATGSYSNLFRVFGC++GS E+
Sbjct: 384 PVSTFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCTDGSTEA 443
Query: 435 TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAW 494
TTLEASKNPMRRQVQTPSRPSR LG+LS RR GAD S D NGNAFDF+ KLLHLAW
Sbjct: 444 TTLEASKNPMRRQVQTPSRPSRSLGTLSRGFRR--GADTSGADTNGNAFDFTTKLLHLAW 501
Query: 495 HPSENSIACAASNSLYMYYA 514
HP+ENS+ACAASNSLYMYYA
Sbjct: 502 HPTENSLACAASNSLYMYYA 521
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224142870|ref|XP_002324758.1| predicted protein [Populus trichocarpa] gi|222866192|gb|EEF03323.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 878 bits (2269), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/519 (82%), Positives = 461/519 (88%), Gaps = 10/519 (1%)
Query: 3 NGGGSSEAAAQP------LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRG 56
NGGGS EAA LEWKF+QVFGERTAGEEVQEVDIISAIEFD++GDHLATGDRG
Sbjct: 2 NGGGSEEAAEAVAAAPVPLEWKFAQVFGERTAGEEVQEVDIISAIEFDRTGDHLATGDRG 61
Query: 57 GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116
GRVVLFERTD RD+GG RRDLE MD+ + RHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN
Sbjct: 62 GRVVLFERTDKRDHGGNRRDLERMDFPIIRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 121
Query: 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIP 176
KIRWCQ+AN AL+LLSTNDKTIK WKV EKKVKK+ D NV P KAAGNGP+ G +
Sbjct: 122 KIRWCQAANGALFLLSTNDKTIKFWKVHEKKVKKICDMNVDPAKAAGNGPVVGPSIPTSS 181
Query: 177 KSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVV-TSQETNLVAGCRRIYAHAHDYH 235
K Y ANGGC ++ G SND SFP GGV SL LPVVV TS E +LV CRRIYAHAHDYH
Sbjct: 182 KPYTANGGCLDKPLGL-SNDFSFPLGGVPSLHLPVVVLTSSEISLVPRCRRIYAHAHDYH 240
Query: 236 INSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC 295
INSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC
Sbjct: 241 INSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC 300
Query: 296 NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH 355
N+LAYSSS+GSIRL+DMRQSALCD+HSKLFEEQE PG+RSFFTEIIASISDIKFA++GR+
Sbjct: 301 NILAYSSSRGSIRLVDMRQSALCDSHSKLFEEQEVPGSRSFFTEIIASISDIKFAKDGRY 360
Query: 356 ILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT 415
ILSRDYMTLKLWDINMDSGPV+TFQVHE+LRPKLCDLYENDSIFDKFECCLSGDG RVAT
Sbjct: 361 ILSRDYMTLKLWDINMDSGPVSTFQVHENLRPKLCDLYENDSIFDKFECCLSGDGLRVAT 420
Query: 416 GSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSA 475
GSYSNLFRVFGCSEGS E+TTLEASKNPMR+QVQTPSRPSR LG+LS RR GAD S
Sbjct: 421 GSYSNLFRVFGCSEGSTEATTLEASKNPMRKQVQTPSRPSRSLGTLSHGFRR--GADTSG 478
Query: 476 LDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 514
+D NGNAFDF+ KLLHLAWHP+ENS+ACAASNSLYMYYA
Sbjct: 479 VDTNGNAFDFTTKLLHLAWHPTENSLACAASNSLYMYYA 517
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356556686|ref|XP_003546654.1| PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 865 bits (2236), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/501 (84%), Positives = 457/501 (91%), Gaps = 5/501 (0%)
Query: 15 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQR 74
LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDT+D+GG R
Sbjct: 18 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGGSR 77
Query: 75 RDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTN 134
RDLE MDYS+ RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQ+AN AL+LLSTN
Sbjct: 78 RDLERMDYSIGRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTN 137
Query: 135 DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194
DKTIK WKVQEKKVKK+ + NV P K+ GNG I S S+ + Y+ NGG +R + S
Sbjct: 138 DKTIKFWKVQEKKVKKISEMNVDPSKSMGNGSIASSSNSSSSRPYLVNGGSPDR-YNYIS 196
Query: 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDL 254
ND SFPPGG+ SLRLP+V +S ET+LVA CRR+YAHAHDYHINSISNNSDGETFISADDL
Sbjct: 197 NDFSFPPGGLPSLRLPMV-SSHETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDL 255
Query: 255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 314
RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCN LAYSSSKGSIRL+D+RQ
Sbjct: 256 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTLAYSSSKGSIRLVDLRQ 315
Query: 315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSG 374
SALCD+H+KLFEEQEAPG+RSFFTEIIASISDIKF ++GR+ILSRDYMTLKLWDINMDSG
Sbjct: 316 SALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFGKDGRYILSRDYMTLKLWDINMDSG 375
Query: 375 PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES 434
PVATFQVHE+LRPKLCDLYENDSIFDKFECCLSGDG RVATGSYSNLFRVFGC+ GSAE+
Sbjct: 376 PVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCAPGSAEA 435
Query: 435 TTLEASKNPMRRQVQTPSRPSRPLG-SLSGVVRRVKGADNSALDANGNAFDFSMKLLHLA 493
TTLEASKNPMRRQV TPSRPSR LG S++ VVRR GA+ +DANGN+FDF+ KLLHLA
Sbjct: 436 TTLEASKNPMRRQVPTPSRPSRSLGNSITRVVRR--GAEAPGVDANGNSFDFTTKLLHLA 493
Query: 494 WHPSENSIACAASNSLYMYYA 514
WHPSENSIACAA+NSLYMYYA
Sbjct: 494 WHPSENSIACAAANSLYMYYA 514
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|11094369|gb|AAG29595.1|AF196288_1 Ser/Thr specific protein phosphatase 2A B regulatory subunit alpha isoform [Medicago sativa subsp. x varia] | Back alignment and taxonomy information |
|---|
Score = 863 bits (2230), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/517 (80%), Positives = 464/517 (89%), Gaps = 8/517 (1%)
Query: 3 NGGG----SSEAAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGR 58
NGG + E QPLEWKFSQVFGER AGEEVQEVDIISAIEFDKSGDHLATGDRGGR
Sbjct: 2 NGGDEVVVAPEEPVQPLEWKFSQVFGERAAGEEVQEVDIISAIEFDKSGDHLATGDRGGR 61
Query: 59 VVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 118
VVLFERTD++D G R DLE MDYS++RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI
Sbjct: 62 VVLFERTDSKDQHGSRSDLERMDYSVNRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 121
Query: 119 RWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS 178
+WCQ+AN A++LLSTNDKTIK WKVQEKKVKK+ D N+ KA GNG I S S+ K
Sbjct: 122 KWCQTANGAVFLLSTNDKTIKFWKVQEKKVKKISDMNIDSSKAMGNGSIASSSNSSSSKP 181
Query: 179 YMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINS 238
++ANGG ++++ SND SFPPGG+ SL+LP VV S ET+L+A CRR+YAHAHDYHINS
Sbjct: 182 HLANGGPSDKSYSYLSNDFSFPPGGLPSLKLPSVV-SHETSLLARCRRVYAHAHDYHINS 240
Query: 239 ISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNML 298
ISNNSDGETFISADDLRINLWNLEIS+QSFNIVDVKPANMEDLTEVITSAEFHPTHCN L
Sbjct: 241 ISNNSDGETFISADDLRINLWNLEISSQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTL 300
Query: 299 AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 358
AYSSSKGSIRL+D+RQSALCD+H+KLFEEQEAPG+RSFFTEIIASISDIKFA++GR+ILS
Sbjct: 301 AYSSSKGSIRLVDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFAKDGRYILS 360
Query: 359 RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 418
RDYMTLKLWDINMDSGPVAT++VHEHLRP+LCDLYENDSIFDKFECCLSGDG RV+TGSY
Sbjct: 361 RDYMTLKLWDINMDSGPVATYRVHEHLRPRLCDLYENDSIFDKFECCLSGDGSRVSTGSY 420
Query: 419 SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG-SLSGVVRRVKGADNSALD 477
SNLFRVFGC+ GS E+TTLEASKNPMRRQV TPSRPSR +G S++ VVRR GA+N+++D
Sbjct: 421 SNLFRVFGCAPGSTEATTLEASKNPMRRQVPTPSRPSRSIGNSITRVVRR--GAENTSVD 478
Query: 478 ANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 514
ANGN+FDF+ KLLHLAWHPSENSIACAA+NSLYMYYA
Sbjct: 479 ANGNSFDFTTKLLHLAWHPSENSIACAAANSLYMYYA 515
|
Source: Medicago sativa subsp. x varia Species: Medicago sativa Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356550460|ref|XP_003543605.1| PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 862 bits (2226), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/517 (82%), Positives = 461/517 (89%), Gaps = 9/517 (1%)
Query: 3 NGGGSSEAAA----QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGR 58
NGG AA PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGR
Sbjct: 2 NGGDEVVAAPAGPPHPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGR 61
Query: 59 VVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 118
VVLFERTDT+D+GG RDLE +DYS+ RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI
Sbjct: 62 VVLFERTDTKDHGGSSRDLERVDYSIGRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 121
Query: 119 RWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS 178
RWCQ AN AL+LLSTNDKTIK WKVQEKKVKK+ + NV P K+ GNG I S S+ +
Sbjct: 122 RWCQIANGALFLLSTNDKTIKFWKVQEKKVKKISEMNVDPSKSMGNGSIASSSNSSSSRP 181
Query: 179 YMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINS 238
Y+ANGG +R + SND SFPPGG+ SLRLP+V +S ET+LVA CRR+YAHAHDYHINS
Sbjct: 182 YLANGGSPDR-YNYISNDFSFPPGGIPSLRLPMV-SSHETSLVARCRRVYAHAHDYHINS 239
Query: 239 ISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNML 298
ISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCN L
Sbjct: 240 ISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNTL 299
Query: 299 AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 358
AYSSSKGSIRL+D+RQSALCD+H+KLFEEQEAPG+RSFFTEIIASISDIKF ++GR+ILS
Sbjct: 300 AYSSSKGSIRLVDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFGKDGRYILS 359
Query: 359 RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 418
RDYMTLKLWDINMDSGPVATFQVHE+LRPKLCDLYENDSIFDKFECCLSGDG R+ATGSY
Sbjct: 360 RDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGLRLATGSY 419
Query: 419 SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG-SLSGVVRRVKGADNSALD 477
SNLFRVFGC+ GSAE+TTLEASKNPMRR V TPSRPSR LG S++ VVRR GA+ +D
Sbjct: 420 SNLFRVFGCAPGSAEATTLEASKNPMRRLVPTPSRPSRSLGNSITRVVRR--GAETPGVD 477
Query: 478 ANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 514
ANGN+FDF+ KLLHLAWHPSENSIACAA+NSLYMYYA
Sbjct: 478 ANGNSFDFTTKLLHLAWHPSENSIACAAANSLYMYYA 514
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225442335|ref|XP_002280910.1| PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 856 bits (2212), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/500 (84%), Positives = 456/500 (91%), Gaps = 4/500 (0%)
Query: 15 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQR 74
LEWKFSQVFGER AGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDT+D+GG R
Sbjct: 17 LEWKFSQVFGERAAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGGSR 76
Query: 75 RDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTN 134
RDLE MDY + RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQ+AN AL+LLSTN
Sbjct: 77 RDLERMDYPI-RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTN 135
Query: 135 DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194
DKTIK WKVQEKKVKK+ D N+ P KA GNG + S S PK Y+ANGG +R++ S
Sbjct: 136 DKTIKFWKVQEKKVKKISDMNLDPSKAVGNGSVASSSNSTSPKPYLANGGSPDRSYSYLS 195
Query: 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDL 254
ND SFPPGG+ SLRLP V +S ET+LVA CRR+YAHAHDYHINSISNNSDGETFISADDL
Sbjct: 196 NDFSFPPGGIPSLRLPTV-SSPETSLVARCRRVYAHAHDYHINSISNNSDGETFISADDL 254
Query: 255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 314
RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL D+RQ
Sbjct: 255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLNDLRQ 314
Query: 315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSG 374
SALCD+HSKLFEEQEAPG+RSFFTEIIASISDIKF+++GR ILSRDYMTLKLWDINMDSG
Sbjct: 315 SALCDSHSKLFEEQEAPGSRSFFTEIIASISDIKFSKDGRFILSRDYMTLKLWDINMDSG 374
Query: 375 PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES 434
PV+TFQVHE+LRPKLCDLYENDSIFDKFECCLSGDG RVATGSYSNLFRVFGCS GS E+
Sbjct: 375 PVSTFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGMRVATGSYSNLFRVFGCSPGSTEA 434
Query: 435 TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAW 494
TTLEASKNPMRRQVQTPSRPSR L S++ VVRR GAD+ +DANGN+FDF+ KLLHLAW
Sbjct: 435 TTLEASKNPMRRQVQTPSRPSRSLSSITRVVRR--GADSPGVDANGNSFDFTTKLLHLAW 492
Query: 495 HPSENSIACAASNSLYMYYA 514
HPSENSIACAA+NSLYMYYA
Sbjct: 493 HPSENSIACAAANSLYMYYA 512
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224128562|ref|XP_002329034.1| predicted protein [Populus trichocarpa] gi|222839705|gb|EEE78028.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 855 bits (2210), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/517 (82%), Positives = 462/517 (89%), Gaps = 8/517 (1%)
Query: 1 MDNGGGSSEAAA---QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGG 57
M+ G +EA A QPLEWKFSQVFGERTAGEEVQEVDIISAIEFD+SGDHLATGDRGG
Sbjct: 1 MNGGDEVAEAPASPPQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDRSGDHLATGDRGG 60
Query: 58 RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 117
RVVLFERTDT+D+GG RRDLE M Y +SRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK
Sbjct: 61 RVVLFERTDTKDHGGSRRDLERMGYPISRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 120
Query: 118 IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPK 177
IRWCQ+AN AL+LLSTNDKTIK WKVQEKKVKK+ + NV P KA GNG + S S+I K
Sbjct: 121 IRWCQTANGALFLLSTNDKTIKYWKVQEKKVKKISEMNVDPSKAVGNGGVASSSNSSIGK 180
Query: 178 SYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHIN 237
Y+ANGG +++ SND S PGG SLRLPVV TS ET+L+A CRR+YAHAHDYHIN
Sbjct: 181 QYLANGG--DKSHNLPSNDLSISPGGFPSLRLPVV-TSNETSLMARCRRVYAHAHDYHIN 237
Query: 238 SISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNM 297
SISNNSDGETFISADDLRINLWNLEISNQSFNI DVKPANMEDLTEVITSAEFHP+HCNM
Sbjct: 238 SISNNSDGETFISADDLRINLWNLEISNQSFNICDVKPANMEDLTEVITSAEFHPSHCNM 297
Query: 298 LAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL 357
LAYSSSKGSIRLIDMRQSALCD+H+KLFEE EAPG+RSFFTEIIASISDIKFAR+GRHIL
Sbjct: 298 LAYSSSKGSIRLIDMRQSALCDSHAKLFEEPEAPGSRSFFTEIIASISDIKFARDGRHIL 357
Query: 358 SRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 417
SRDYMTLKLWDINMDSGPVATFQVHE+LRPKLCDLYENDSIFDKFECC SGDG RVATGS
Sbjct: 358 SRDYMTLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCSSGDGLRVATGS 417
Query: 418 YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALD 477
YSNLFRVFGC+ GS E++TLEASKNPMRRQVQTPSRPSR L S++ VVRR GA+ +D
Sbjct: 418 YSNLFRVFGCAPGSTEASTLEASKNPMRRQVQTPSRPSRSLSSITRVVRR--GAEGPGVD 475
Query: 478 ANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 514
ANGN+FDF+ KLLHLAWHP+ENSIACAA+NSLYMYYA
Sbjct: 476 ANGNSFDFTTKLLHLAWHPTENSIACAAANSLYMYYA 512
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18394522|ref|NP_564033.1| Protein phosphatase 2A, regulatory subunit PR55 [Arabidopsis thaliana] gi|75319459|sp|Q39247.1|2ABB_ARATH RecName: Full=Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform; Short=AtB beta; Short=PP2A, subunit B, beta isoform gi|1408460|gb|AAB60777.1| type 2A protein serine/threonine phosphatase 55 kDa B regulatory subunit [Arabidopsis thaliana] gi|15010728|gb|AAK74023.1| At1g17720/F11A6_14 [Arabidopsis thaliana] gi|23308483|gb|AAN18211.1| At1g17720/F11A6_14 [Arabidopsis thaliana] gi|110741434|dbj|BAE98679.1| type 2A protein serine/threonine phosphatase 55kDa B regulatory subunit [Arabidopsis thaliana] gi|332191505|gb|AEE29626.1| Protein phosphatase 2A, regulatory subunit PR55 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 847 bits (2189), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/514 (78%), Positives = 450/514 (87%), Gaps = 16/514 (3%)
Query: 3 NGGGSSEAAAQP--LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVV 60
NGG + + P LEW+FSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVV
Sbjct: 2 NGGDDAATSGPPPSLEWRFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVV 61
Query: 61 LFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW 120
LFERTDT+D+GG R+DLE DY + RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW
Sbjct: 62 LFERTDTKDHGGSRKDLEQTDYPV-RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW 120
Query: 121 CQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM 180
CQ AN AL+LLSTNDKTIK WKVQEKK+KK+ + N+ P S S IP +
Sbjct: 121 CQPANGALFLLSTNDKTIKYWKVQEKKIKKISEMNIDP-----------SESSNIPPQLV 169
Query: 181 ANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSIS 240
NG ++ S D SFPPGG+ SLRLPVVVTSQETNLVA CRR+YAHAHDYHINSIS
Sbjct: 170 TNGLPADKGHDYLSKDFSFPPGGIPSLRLPVVVTSQETNLVARCRRVYAHAHDYHINSIS 229
Query: 241 NNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY 300
N+SDGETFISADDLR+NLWNLEISNQSFNIVDVKP NMEDLTEVITSAEFHP HCNMLAY
Sbjct: 230 NSSDGETFISADDLRVNLWNLEISNQSFNIVDVKPTNMEDLTEVITSAEFHPIHCNMLAY 289
Query: 301 SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD 360
SSSKGSIRLIDMRQSALCD+H+KLFEE EAPG+RSFFTEIIASISDIKF+++GR+ILSRD
Sbjct: 290 SSSKGSIRLIDMRQSALCDSHTKLFEEPEAPGSRSFFTEIIASISDIKFSKDGRYILSRD 349
Query: 361 YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 420
YMTLKLWDINMDSGPVA++QVHEHLRP+LCDLYENDSIFDKFECCLSGDG RVATGSYSN
Sbjct: 350 YMTLKLWDINMDSGPVASYQVHEHLRPRLCDLYENDSIFDKFECCLSGDGLRVATGSYSN 409
Query: 421 LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANG 480
LFRVFG S+GS E+ TLEASKNPMRRQ+QTP+RPSR +GS++ VVRR G+++ +ANG
Sbjct: 410 LFRVFGASQGSTEAATLEASKNPMRRQIQTPARPSRSIGSMTRVVRR--GSESPGTEANG 467
Query: 481 NAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 514
NA+DF+ KLLH+AWHP+ENSIACAA+NSLYMYYA
Sbjct: 468 NAYDFTTKLLHMAWHPTENSIACAAANSLYMYYA 501
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738699|emb|CBI27944.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 846 bits (2185), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/514 (79%), Positives = 448/514 (87%), Gaps = 9/514 (1%)
Query: 3 NGG--GSSEAAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVV 60
NGG EA A+PLEW+FSQVFGERTAGEEVQEVDIISAIEFDK+GDHLATGDRGGRVV
Sbjct: 2 NGGEVKEVEAPAEPLEWRFSQVFGERTAGEEVQEVDIISAIEFDKTGDHLATGDRGGRVV 61
Query: 61 LFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW 120
LFERTD RD+GG RRDLEMMD+ + HPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW
Sbjct: 62 LFERTDKRDHGGYRRDLEMMDHPVRTHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW 121
Query: 121 CQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM 180
CQ+AN+AL+LLSTNDKTIK WK+QEKKVKK+ D N+ P KA GNG + +I K Y+
Sbjct: 122 CQTANNALFLLSTNDKTIKFWKIQEKKVKKICDMNIDPSKATGNG----NPACSIVKPYV 177
Query: 181 ANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSIS 240
NGGC +R++G S D SFP G ++L P VV S ET+L A CRRIYAHAHDYHINSIS
Sbjct: 178 TNGGCADRSYGYLSKDFSFPAGSFAALHFPTVVHSNETSLSARCRRIYAHAHDYHINSIS 237
Query: 241 NNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY 300
NNSDGETFISADDLRINLWNLEISNQSFNIVDVKP NMEDLTEVITSAEFHPTHCNMLAY
Sbjct: 238 NNSDGETFISADDLRINLWNLEISNQSFNIVDVKPTNMEDLTEVITSAEFHPTHCNMLAY 297
Query: 301 SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD 360
SSSKGSIRLID+RQSALCD+H+KLFE EAP ++SFFTEIIASISDIKF ++GR+ILSRD
Sbjct: 298 SSSKGSIRLIDLRQSALCDSHAKLFEGMEAPNSKSFFTEIIASISDIKFGKDGRYILSRD 357
Query: 361 YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 420
YM LKLWDINMDSGPVATFQVHE+LRPKLCDLYENDSIFDKFECCLSGDG RVATGSYSN
Sbjct: 358 YMNLKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGTRVATGSYSN 417
Query: 421 LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANG 480
LFRVFGC+ GS E+TTLEASKNPMRRQ PSRP R L + + V RR G ++ A+DANG
Sbjct: 418 LFRVFGCTAGSTEATTLEASKNPMRRQAPAPSRP-RSLSTFARVGRR--GPESPAVDANG 474
Query: 481 NAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 514
NAFD S KLLHLAWHP+ENS+ACAA+NSLYMY+A
Sbjct: 475 NAFDLSTKLLHLAWHPTENSLACAAANSLYMYFA 508
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30685484|ref|NP_849681.1| Protein phosphatase 2A, regulatory subunit PR55 [Arabidopsis thaliana] gi|9802743|gb|AAF99812.1|AC034257_4 type 2A protein serine/threonine phosphatase 55kDa B regulatory subunit [Arabidopsis thaliana] gi|13877637|gb|AAK43896.1|AF370519_1 type 2A protein serine/threonine phosphatase 55kDa B regulatory subunit [Arabidopsis thaliana] gi|25084199|gb|AAN72194.1| type 2A protein serine/threonine phosphatase 55kDa B regulatory subunit [Arabidopsis thaliana] gi|332191506|gb|AEE29627.1| Protein phosphatase 2A, regulatory subunit PR55 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 840 bits (2171), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/514 (78%), Positives = 449/514 (87%), Gaps = 17/514 (3%)
Query: 3 NGGGSSEAAAQP--LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVV 60
NGG + + P LEW+FSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVV
Sbjct: 2 NGGDDAATSGPPPSLEWRFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVV 61
Query: 61 LFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW 120
LFERTDT+D+GG R+DLE DY + RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW
Sbjct: 62 LFERTDTKDHGGSRKDLEQTDYPV-RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW 120
Query: 121 CQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM 180
CQ AN AL+LLSTNDKTIK WKVQEKK+KK+ + N+ P S S IP +
Sbjct: 121 CQPANGALFLLSTNDKTIKYWKVQEKKIKKISEMNIDP-----------SESSNIPPQLV 169
Query: 181 ANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSIS 240
NG ++ S D SFPPGG+ SLRLPVV TSQETNLVA CRR+YAHAHDYHINSIS
Sbjct: 170 TNGLPADKGHDYLSKDFSFPPGGIPSLRLPVV-TSQETNLVARCRRVYAHAHDYHINSIS 228
Query: 241 NNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY 300
N+SDGETFISADDLR+NLWNLEISNQSFNIVDVKP NMEDLTEVITSAEFHP HCNMLAY
Sbjct: 229 NSSDGETFISADDLRVNLWNLEISNQSFNIVDVKPTNMEDLTEVITSAEFHPIHCNMLAY 288
Query: 301 SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD 360
SSSKGSIRLIDMRQSALCD+H+KLFEE EAPG+RSFFTEIIASISDIKF+++GR+ILSRD
Sbjct: 289 SSSKGSIRLIDMRQSALCDSHTKLFEEPEAPGSRSFFTEIIASISDIKFSKDGRYILSRD 348
Query: 361 YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 420
YMTLKLWDINMDSGPVA++QVHEHLRP+LCDLYENDSIFDKFECCLSGDG RVATGSYSN
Sbjct: 349 YMTLKLWDINMDSGPVASYQVHEHLRPRLCDLYENDSIFDKFECCLSGDGLRVATGSYSN 408
Query: 421 LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANG 480
LFRVFG S+GS E+ TLEASKNPMRRQ+QTP+RPSR +GS++ VVRR G+++ +ANG
Sbjct: 409 LFRVFGASQGSTEAATLEASKNPMRRQIQTPARPSRSIGSMTRVVRR--GSESPGTEANG 466
Query: 481 NAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 514
NA+DF+ KLLH+AWHP+ENSIACAA+NSLYMYYA
Sbjct: 467 NAYDFTTKLLHMAWHPTENSIACAAANSLYMYYA 500
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 514 | ||||||
| TAIR|locus:2007963 | 501 | ATB BETA [Arabidopsis thaliana | 0.968 | 0.994 | 0.752 | 1.8e-206 | |
| DICTYBASE|DDB_G0283905 | 483 | phr2aB "protein phosphatase 2A | 0.926 | 0.985 | 0.483 | 1.5e-122 | |
| UNIPROTKB|F1NNN2 | 450 | PPP2R2D "Serine/threonine-prot | 0.575 | 0.657 | 0.549 | 7.5e-120 | |
| UNIPROTKB|F1NS69 | 451 | PPP2R2D "Serine/threonine-prot | 0.575 | 0.656 | 0.549 | 7.5e-120 | |
| UNIPROTKB|Q5ZIY5 | 451 | PPP2R2D "Serine/threonine-prot | 0.575 | 0.656 | 0.549 | 7.5e-120 | |
| UNIPROTKB|Q6DIY3 | 447 | ppp2r2d "Serine/threonine-prot | 0.575 | 0.662 | 0.549 | 1.5e-119 | |
| UNIPROTKB|Q66LE6 | 453 | PPP2R2D "Serine/threonine-prot | 0.577 | 0.655 | 0.544 | 1.5e-119 | |
| MGI|MGI:1289252 | 453 | Ppp2r2d "protein phosphatase 2 | 0.577 | 0.655 | 0.538 | 3.2e-119 | |
| CGD|CAL0004658 | 519 | orf19.1468 [Candida albicans ( | 0.431 | 0.427 | 0.618 | 5.7e-119 | |
| UNIPROTKB|Q7ZX64 | 447 | ppp2r2d "Serine/threonine-prot | 0.575 | 0.662 | 0.539 | 2.2e-118 |
| TAIR|locus:2007963 ATB BETA [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1997 (708.0 bits), Expect = 1.8e-206, P = 1.8e-206
Identities = 387/514 (75%), Positives = 428/514 (83%)
Query: 3 NGGGSSEAAAQP--LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVV 60
NGG + + P LEW+FSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVV
Sbjct: 2 NGGDDAATSGPPPSLEWRFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVV 61
Query: 61 LFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW 120
LFERTDT+D+GG R+DLE DY + RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW
Sbjct: 62 LFERTDTKDHGGSRKDLEQTDYPV-RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW 120
Query: 121 CQSANSALYLLSTNDKTIXXXXXXXXXXXXXFDWNVHPEKAAGNGPIFGSHVSAIPKSYM 180
CQ AN AL+LLSTNDKTI + N+ P ++ S IP +
Sbjct: 121 CQPANGALFLLSTNDKTIKYWKVQEKKIKKISEMNIDPSES-----------SNIPPQLV 169
Query: 181 ANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSIS 240
NG ++ S D SFPPGG+ SLRLPVVVTSQETNLVA CRR+YAHAHDYHINSIS
Sbjct: 170 TNGLPADKGHDYLSKDFSFPPGGIPSLRLPVVVTSQETNLVARCRRVYAHAHDYHINSIS 229
Query: 241 NNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY 300
N+SDGETFISADDLR+NLWNLEISNQSFNIVDVKP NMEDLTEVITSAEFHP HCNMLAY
Sbjct: 230 NSSDGETFISADDLRVNLWNLEISNQSFNIVDVKPTNMEDLTEVITSAEFHPIHCNMLAY 289
Query: 301 SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD 360
SSSKGSIRLIDMRQSALCD+H+KLFEE EAPG+RSFFTEIIASISDIKF+++GR+ILSRD
Sbjct: 290 SSSKGSIRLIDMRQSALCDSHTKLFEEPEAPGSRSFFTEIIASISDIKFSKDGRYILSRD 349
Query: 361 YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 420
YMTLKLWDINMDSGPVA++QVHEHLRP+LCDLYENDSIFDKFECCLSGDG RVATGSYSN
Sbjct: 350 YMTLKLWDINMDSGPVASYQVHEHLRPRLCDLYENDSIFDKFECCLSGDGLRVATGSYSN 409
Query: 421 LFRVFGCSEGSAESTTLEASKNPMRRQVQTXXXXXXXXXXXXXVVRRVKGADNSALDANG 480
LFRVFG S+GS E+ TLEASKNPMRRQ+QT VVRR G+++ +ANG
Sbjct: 410 LFRVFGASQGSTEAATLEASKNPMRRQIQTPARPSRSIGSMTRVVRR--GSESPGTEANG 467
Query: 481 NAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 514
NA+DF+ KLLH+AWHP+ENSIACAA+NSLYMYYA
Sbjct: 468 NAYDFTTKLLHMAWHPTENSIACAAANSLYMYYA 501
|
|
| DICTYBASE|DDB_G0283905 phr2aB "protein phosphatase 2A B55 regulatory subunit" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1205 (429.2 bits), Expect = 1.5e-122, P = 1.5e-122
Identities = 243/503 (48%), Positives = 336/503 (66%)
Query: 13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGG 72
+PL+W+FSQ FG + E+ + +++ AIEFD++GD +A GD+GG+V+L +RT D
Sbjct: 3 EPLDWRFSQTFGGK-GNEDASDANVVPAIEFDQTGDFIAVGDKGGKVLLLKRT--HDKQS 59
Query: 73 QRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLS 132
++ S+ PE+R+ +EFQSHEPEFDYLKSLEIEEKINKI+WC N A +LL+
Sbjct: 60 SKK---------SKLPEYRFYSEFQSHEPEFDYLKSLEIEEKINKIKWCPKQNDAQFLLT 110
Query: 133 TNDKTIXXXXXXXXXXXXXFDWNVHPEKAAGNGPIFGSHV-SAIPKSYMANGGCGERNFG 191
TNDKTI + + NG + ++ S +Y+ N G N
Sbjct: 111 TNDKTIKLWKVYEKKIKQV-STSATTTGPSYNGSLASNNTRSPSHTTYIYNSS-GAHNMN 168
Query: 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 251
N+S+ +++ ++P + T++ET + A R+I+ +AH YHINSIS NSDGET+IS+
Sbjct: 169 NNMNNSN-NNNNLNNFKIPKL-TTRETVVTATPRKIFQNAHAYHINSISLNSDGETYISS 226
Query: 252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311
DDLRI+LWNL I+ + FN+VD+KP NMEDLTEVITSAEFHPT CN+ YSSSKG+I+L D
Sbjct: 227 DDLRIHLWNLNINTECFNVVDIKPTNMEDLTEVITSAEFHPTSCNIFMYSSSKGTIKLGD 286
Query: 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINM 371
+R SALCD H+K+FEE E P +SFF+EII+SISDIKF+R+GR+ILSRD++TLKLWDINM
Sbjct: 287 LRSSALCDNHAKVFEEYEDPSNKSFFSEIISSISDIKFSRDGRYILSRDFLTLKLWDINM 346
Query: 372 DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 431
++ PV T Q+H++L+PKLCDLYEND IFDKFEC L+ DG ++ TGSY N ++ S
Sbjct: 347 ENKPVKTIQIHDYLKPKLCDLYENDCIFDKFECTLNHDGTQMLTGSYHNYLHIY--DRNS 404
Query: 432 AESTTLEASKNPMRRQVQTXXXXXXXXXXXXXVVRRVKGADNSALDANGNAFDFSMKLLH 491
+ LEASK + + +T +R K D + +A +++ K LH
Sbjct: 405 KQDVCLEASKQATKSKTKTLTTKMK--------LRSSKKEPKKPEDIHPDAIEYTKKTLH 456
Query: 492 LAWHPSENSIACAASNSLYMYYA 514
AWHP +N IA A+N++Y+Y A
Sbjct: 457 CAWHPKDNLIAVGAANTVYLYAA 479
|
|
| UNIPROTKB|F1NNN2 PPP2R2D "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 892 (319.1 bits), Expect = 7.5e-120, Sum P(2) = 7.5e-120
Identities = 172/313 (54%), Positives = 230/313 (73%)
Query: 201 PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWN 260
P +++LR+P++ + + A RRI+A+AH YHINSIS NSD ET++SADDLRINLW+
Sbjct: 149 PFKITALRVPIL-KPMDLMVEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWH 207
Query: 261 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT 320
LEI+++SFNIVD+KPANME+LTEVIT+AEFHP HCN+ YSSSKG+IRL DMR SALCD
Sbjct: 208 LEITDRSFNIVDIKPANMEELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRSSALCDR 267
Query: 321 HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQ 380
HSK FEE E P +RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM++ PV T+Q
Sbjct: 268 HSKFFEEPEDPSSRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQ 327
Query: 381 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS 440
VHE+LR KLC LYEND IFDKFECC +G G + TGSY+N FR+F + TLEAS
Sbjct: 328 VHEYLRSKLCSLYENDCIFDKFECCWNGSDGAIMTGSYNNFFRMF--DRNTRRDITLEAS 385
Query: 441 KNPMRRQVQTXXXXXXXXXXXXXVVRRV-KGADNSALDANGNAFDFSMKLLHLAWHPSEN 499
+ + + R+V G + N ++ DF+ K+LH AWHP EN
Sbjct: 386 RESSKPRA-------------ILKPRKVCTGGKRKKDEINVDSLDFNKKILHTAWHPMEN 432
Query: 500 SIACAASNSLYMY 512
IA AA+N+LY++
Sbjct: 433 IIAVAATNNLYIF 445
|
|
| UNIPROTKB|F1NS69 PPP2R2D "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 892 (319.1 bits), Expect = 7.5e-120, Sum P(2) = 7.5e-120
Identities = 172/313 (54%), Positives = 230/313 (73%)
Query: 201 PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWN 260
P +++LR+P++ + + A RRI+A+AH YHINSIS NSD ET++SADDLRINLW+
Sbjct: 150 PFKITALRVPIL-KPMDLMVEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWH 208
Query: 261 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT 320
LEI+++SFNIVD+KPANME+LTEVIT+AEFHP HCN+ YSSSKG+IRL DMR SALCD
Sbjct: 209 LEITDRSFNIVDIKPANMEELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRSSALCDR 268
Query: 321 HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQ 380
HSK FEE E P +RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM++ PV T+Q
Sbjct: 269 HSKFFEEPEDPSSRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQ 328
Query: 381 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS 440
VHE+LR KLC LYEND IFDKFECC +G G + TGSY+N FR+F + TLEAS
Sbjct: 329 VHEYLRSKLCSLYENDCIFDKFECCWNGSDGAIMTGSYNNFFRMF--DRNTRRDITLEAS 386
Query: 441 KNPMRRQVQTXXXXXXXXXXXXXVVRRV-KGADNSALDANGNAFDFSMKLLHLAWHPSEN 499
+ + + R+V G + N ++ DF+ K+LH AWHP EN
Sbjct: 387 RESSKPRA-------------ILKPRKVCTGGKRKKDEINVDSLDFNKKILHTAWHPMEN 433
Query: 500 SIACAASNSLYMY 512
IA AA+N+LY++
Sbjct: 434 IIAVAATNNLYIF 446
|
|
| UNIPROTKB|Q5ZIY5 PPP2R2D "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 892 (319.1 bits), Expect = 7.5e-120, Sum P(2) = 7.5e-120
Identities = 172/313 (54%), Positives = 230/313 (73%)
Query: 201 PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWN 260
P +++LR+P++ + + A RRI+A+AH YHINSIS NSD ET++SADDLRINLW+
Sbjct: 150 PFKITALRVPIL-KPMDLMVEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWH 208
Query: 261 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT 320
LEI+++SFNIVD+KPANME+LTEVIT+AEFHP HCN+ YSSSKG+IRL DMR SALCD
Sbjct: 209 LEITDRSFNIVDIKPANMEELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRSSALCDR 268
Query: 321 HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQ 380
HSK FEE E P +RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM++ PV T+Q
Sbjct: 269 HSKFFEEPEDPSSRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQ 328
Query: 381 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS 440
VHE+LR KLC LYEND IFDKFECC +G G + TGSY+N FR+F + TLEAS
Sbjct: 329 VHEYLRSKLCSLYENDCIFDKFECCWNGSDGAIMTGSYNNFFRMF--DRNTRRDITLEAS 386
Query: 441 KNPMRRQVQTXXXXXXXXXXXXXVVRRV-KGADNSALDANGNAFDFSMKLLHLAWHPSEN 499
+ + + R+V G + N ++ DF+ K+LH AWHP EN
Sbjct: 387 RESSKPRA-------------ILKPRKVCTGGKRKKDEINVDSLDFNKKILHTAWHPMEN 433
Query: 500 SIACAASNSLYMY 512
IA AA+N+LY++
Sbjct: 434 IIAVAATNNLYIF 446
|
|
| UNIPROTKB|Q6DIY3 ppp2r2d "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 891 (318.7 bits), Expect = 1.5e-119, Sum P(2) = 1.5e-119
Identities = 172/313 (54%), Positives = 230/313 (73%)
Query: 201 PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWN 260
P ++SLR+P++ + + A RRI+A+AH YHINSIS NSD ET++SADDLRINLW+
Sbjct: 146 PFRITSLRVPIL-KPMDLMVEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWH 204
Query: 261 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT 320
LEI+++SFNIVD+KPANME+LTEVIT+AEFHP HCN+ YSSSKG+IRL DMR SALCD
Sbjct: 205 LEITDRSFNIVDIKPANMEELTEVITAAEFHPHHCNVFVYSSSKGTIRLCDMRDSALCDR 264
Query: 321 HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQ 380
HSK FEE E P +RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM+S PV T+Q
Sbjct: 265 HSKFFEEPEDPSSRSFFSEIISSISDVKFSNSGRYMMTRDYLSVKVWDLNMESRPVETYQ 324
Query: 381 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS 440
VHE+LR KLC LYEND IFDKFECC +G + TGSY+N FR+F + TLEAS
Sbjct: 325 VHEYLRSKLCSLYENDCIFDKFECCWNGSDSAIMTGSYNNFFRMF--DRNTRRDITLEAS 382
Query: 441 KNPMRRQVQTXXXXXXXXXXXXXVVRRV-KGADNSALDANGNAFDFSMKLLHLAWHPSEN 499
+ + + R+V G + N ++ DF+ K+LH AWHP++N
Sbjct: 383 RESSKPRA-------------ILKPRKVCTGGKRKKDEINVDSLDFNKKILHTAWHPTDN 429
Query: 500 SIACAASNSLYMY 512
IA AA+N+LY++
Sbjct: 430 IIAVAATNNLYIF 442
|
|
| UNIPROTKB|Q66LE6 PPP2R2D "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 871 (311.7 bits), Expect = 1.5e-119, Sum P(2) = 1.5e-119
Identities = 170/312 (54%), Positives = 227/312 (72%)
Query: 201 PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWN 260
P +++LR+P++ + + A RRI+A+AH YHINSIS NSD ET++SADDLRINLW+
Sbjct: 152 PFRITALRVPIL-KPMDLMVEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWH 210
Query: 261 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT 320
LEI+++SFNIVD+KPANME+LTEVIT+AEFHP CN+ YSSSKG+IRL DMR SALCD
Sbjct: 211 LEITDRSFNIVDIKPANMEELTEVITAAEFHPHQCNVFVYSSSKGTIRLCDMRSSALCDR 270
Query: 321 HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQ 380
HSK FEE E P +RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM+S PV T Q
Sbjct: 271 HSKFFEEPEDPSSRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMESRPVETHQ 330
Query: 381 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS 440
VHE+LR KLC LYEND IFDKFECC +G + TGSY+N FR+F + TLEAS
Sbjct: 331 VHEYLRSKLCSLYENDCIFDKFECCWNGSDSAIMTGSYNNFFRMF--DRDTRRDVTLEAS 388
Query: 441 KNPMRRQVQTXXXXXXXXXXXXXVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENS 500
+ + + +R K D ++D+ DF+ K+LH AWHP +N
Sbjct: 389 RESSKPRASLKPRKVCTGG------KRRK--DEISVDS----LDFNKKILHTAWHPVDNV 436
Query: 501 IACAASNSLYMY 512
IA AA+N+LY++
Sbjct: 437 IAVAATNNLYIF 448
|
|
| MGI|MGI:1289252 Ppp2r2d "protein phosphatase 2, regulatory subunit B, delta isoform" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 864 (309.2 bits), Expect = 3.2e-119, Sum P(2) = 3.2e-119
Identities = 168/312 (53%), Positives = 226/312 (72%)
Query: 201 PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWN 260
P +++LR+P++ + + A RRI+A+AH YHINSIS NSD ET++SADDLRINLW+
Sbjct: 152 PFRITALRVPIL-KPMDLMVEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWH 210
Query: 261 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT 320
LEI+++SFNIVD+KPANME+LTEVIT+AEFHP CN+ YSSSKG+IRL DMR SALCD
Sbjct: 211 LEITDRSFNIVDIKPANMEELTEVITAAEFHPHQCNVFVYSSSKGTIRLCDMRSSALCDR 270
Query: 321 HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQ 380
H+K FEE E P +RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM+ PV T Q
Sbjct: 271 HAKFFEEPEDPSSRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMEGRPVETHQ 330
Query: 381 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS 440
VHE+LR KLC LYEND IFDKFECC +G + TGSY+N FR+F + TLEAS
Sbjct: 331 VHEYLRSKLCSLYENDCIFDKFECCWNGSDSAIMTGSYNNFFRMF--DRNTRRDVTLEAS 388
Query: 441 KNPMRRQVQTXXXXXXXXXXXXXVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENS 500
+ + + +R K D ++D+ DF+ K+LH AWHP E+
Sbjct: 389 RENSKPRASLKPRKVCTGG------KRKK--DEISVDS----LDFNKKILHTAWHPMESI 436
Query: 501 IACAASNSLYMY 512
IA AA+N+LY++
Sbjct: 437 IAVAATNNLYIF 448
|
|
| CGD|CAL0004658 orf19.1468 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 747 (268.0 bits), Expect = 5.7e-119, Sum P(3) = 5.7e-119
Identities = 138/223 (61%), Positives = 179/223 (80%)
Query: 203 GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLE 262
G+SSL+LP + + + A ++IYA+AH YHINSIS NSD ET++SADDLRINLWNL
Sbjct: 143 GISSLKLPQLQLHDKL-ISAQPKKIYANAHAYHINSISVNSDQETYLSADDLRINLWNLG 201
Query: 263 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS 322
I++QSFNIVD+KPANME+LTEVITSAEFHP+ CN+ YSSSKG+I+L DMR ++LCD+H+
Sbjct: 202 IADQSFNIVDIKPANMEELTEVITSAEFHPSQCNLFMYSSSKGTIKLSDMRSNSLCDSHA 261
Query: 323 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVH 382
K+FEE P + +FFTEI +SISD+KF+ +GR+I SRDYMT+K+WD+ M++ P+ T VH
Sbjct: 262 KIFEEYLDPSSHNFFTEITSSISDVKFSHDGRYIASRDYMTVKIWDLAMENKPLKTIDVH 321
Query: 383 EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 425
EHLR +LCD YEND+IFDKFE GD V TGSY+N F ++
Sbjct: 322 EHLRERLCDTYENDAIFDKFEVQFGGDNKSVMTGSYNNQFVIY 364
|
|
| UNIPROTKB|Q7ZX64 ppp2r2d "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 884 (316.2 bits), Expect = 2.2e-118, Sum P(2) = 2.2e-118
Identities = 169/313 (53%), Positives = 230/313 (73%)
Query: 201 PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWN 260
P ++SLR+P++ + + A RRI+A+AH YHINSIS NSD +T++SADDLR+NLW+
Sbjct: 146 PFRITSLRVPIL-KPMDLMVEASPRRIFANAHTYHINSISVNSDHQTYLSADDLRVNLWH 204
Query: 261 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT 320
LEI+++SFNIVD+KPANME+LTEVIT+AEFHP HC+M YSSSKG+IRL DMR +ALCD
Sbjct: 205 LEITDRSFNIVDIKPANMEELTEVITAAEFHPHHCHMFVYSSSKGTIRLCDMRDAALCDR 264
Query: 321 HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQ 380
HSK FEE E P +RSFF+EII+SISD+KF+ +GR++++RDY+++K+WD+NM+S PV T+Q
Sbjct: 265 HSKFFEEPEDPSSRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMESRPVETYQ 324
Query: 381 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS 440
VHE+LR KLC LYEND IFDKFECC +G + TGSY+N FR+F + TLEAS
Sbjct: 325 VHEYLRSKLCSLYENDCIFDKFECCWNGSDSSIMTGSYNNFFRMF--DRNTRRDITLEAS 382
Query: 441 KNPMRRQVQTXXXXXXXXXXXXXVVRRV-KGADNSALDANGNAFDFSMKLLHLAWHPSEN 499
+ + + R+V G + N ++ DF+ K+LH AWHP++N
Sbjct: 383 RESSKPRATLKP-------------RKVCTGGKRKKDEINVDSLDFNKKILHTAWHPTDN 429
Query: 500 SIACAASNSLYMY 512
IA AA+N+LY++
Sbjct: 430 IIAVAATNNLYIF 442
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0E2P1 | 2ABB_ORYSJ | No assigned EC number | 0.7895 | 0.9630 | 0.9428 | yes | no |
| Q39247 | 2ABB_ARATH | No assigned EC number | 0.7879 | 0.9688 | 0.9940 | yes | no |
| Q54Q99 | PH2AB_DICDI | No assigned EC number | 0.4970 | 0.9182 | 0.9772 | yes | no |
| Q00006 | 2ABB_RABIT | No assigned EC number | 0.5095 | 0.7937 | 0.9878 | yes | no |
| Q4R8L3 | 2ABB_MACFA | No assigned EC number | 0.5114 | 0.8093 | 0.9390 | N/A | no |
| Q6DIY3 | 2ABD_XENTR | No assigned EC number | 0.4970 | 0.8521 | 0.9798 | yes | no |
| P36877 | 2ABB_RAT | No assigned EC number | 0.5135 | 0.8093 | 0.9390 | yes | no |
| P36872 | 2ABA_DROME | No assigned EC number | 0.4921 | 0.8618 | 0.8877 | yes | no |
| Q5E9Q7 | 2ABB_BOVIN | No assigned EC number | 0.5114 | 0.8093 | 0.9390 | yes | no |
| Q29090 | 2ABA_PIG | No assigned EC number | 0.5093 | 0.8171 | 0.9859 | yes | no |
| Q66LE6 | 2ABD_HUMAN | No assigned EC number | 0.5020 | 0.8424 | 0.9558 | yes | no |
| Q5R4A2 | 2ABB_PONAB | No assigned EC number | 0.5114 | 0.8093 | 0.9390 | yes | no |
| Q12702 | 2ABA_SCHPO | No assigned EC number | 0.5039 | 0.8638 | 0.9589 | yes | no |
| Q38821 | 2ABA_ARATH | No assigned EC number | 0.7596 | 0.9883 | 0.9902 | no | no |
| Q6ZWR4 | 2ABB_MOUSE | No assigned EC number | 0.5114 | 0.8093 | 0.9390 | yes | no |
| Q5ZIY5 | 2ABD_CHICK | No assigned EC number | 0.5020 | 0.8424 | 0.9600 | yes | no |
| A1L3L9 | 2ABB_XENLA | No assigned EC number | 0.5040 | 0.8268 | 0.9081 | N/A | no |
| B6VA23 | 2ABB_CARAU | No assigned EC number | 0.5073 | 0.8093 | 0.9390 | N/A | no |
| Q00362 | 2ABA_YEAST | No assigned EC number | 0.5312 | 0.7276 | 0.7110 | yes | no |
| Q6NY64 | 2ABD_DANRE | No assigned EC number | 0.5009 | 0.8521 | 0.9798 | yes | no |
| Q5Z8Z7 | 2ABA_ORYSJ | No assigned EC number | 0.7597 | 0.9824 | 0.8691 | no | no |
| A2X2K3 | 2ABB_ORYSI | No assigned EC number | 0.7895 | 0.9630 | 0.9428 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.VI.495.1 | hypothetical protein (506 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 514 | |||
| COG5170 | 460 | COG5170, CDC55, Serine/threonine protein phosphata | 1e-155 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 7e-08 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-05 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-05 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-05 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-04 |
| >gnl|CDD|227498 COG5170, CDC55, Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 450 bits (1159), Expect = e-155
Identities = 225/510 (44%), Positives = 286/510 (56%), Gaps = 68/510 (13%)
Query: 16 EWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRR 75
KF Q FG++ E D I+A+EFD++G +LATGD+GGRVVLFER
Sbjct: 7 ILKFKQCFGDKLDLNSSTEADKITAVEFDETGLYLATGDKGGRVVLFER----------- 55
Query: 76 DLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTND 135
S E+++ TEFQSHE EFDYLKSLEIEEKIN I W +LLSTND
Sbjct: 56 -------EKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTND 108
Query: 136 KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195
KTIKLWK+ EK +K V + N+ S+
Sbjct: 109 KTIKLWKIYEKNLKVVAENNL-------------------------------------SD 131
Query: 196 DSSFPPGG----VSSLRLPVVVTSQETNLVAGC-RRIYAHAHDYHINSISNNSDGETFIS 250
P GG L LP + S+ ++A R+YA+AH YHINSIS NSD ET +S
Sbjct: 132 SFHSPMGGPLTSTKELLLPRL--SEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLS 189
Query: 251 ADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 310
ADDLRINLWNLEI + SFNIVD+KP NME+LTEVITSAEFHP CN+ YSSSKG I+L
Sbjct: 190 ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN 249
Query: 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDIN 370
D+RQSALCD KLFE FF EI++SISD KF+ NGR+ILSRDY+T+K+WD+N
Sbjct: 250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVN 309
Query: 371 MDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE- 429
M P+ T +H L +L D+YEND+IFDKFE SGD V +GSYSN F ++
Sbjct: 310 MAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDSS 369
Query: 430 --GSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANG---NAFD 484
A + +V+ + L R + + D
Sbjct: 370 GFKDVGHVVNLADGSAEDFKVKCETNNVEKKDKLKNNDWRSVSSSADGFVVACEDPDNLD 429
Query: 485 FSMKLLHLAWHPSENSIACAASNSLYMYYA 514
K+LH +WHP E+S+A AA+N+L+++
Sbjct: 430 LLKKILHRSWHPFEDSVAIAATNNLFVFSK 459
|
Length = 460 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 7e-08
Identities = 74/394 (18%), Positives = 131/394 (33%), Gaps = 119/394 (30%)
Query: 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTE 95
++ + F G LATG G + ++ DLE +
Sbjct: 10 GGVTCVAFSPDGKLLATGSGDGTIKVW-------------DLETGEL----------LRT 46
Query: 96 FQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWN 155
+ H + + A+ ++DKTI+LW ++ + V
Sbjct: 47 LKGHT------------GPVRDVAAS--ADGTYLASGSSDKTIRLWDLE--TGECVRTLT 90
Query: 156 VHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTS 215
H + S P + + S D + +++ V T
Sbjct: 91 GH------TSYVSSVAFS--PDGRILSSS---------SRDKT--------IKVWDVETG 125
Query: 216 QETNLVAGCRRIYAHAHDYHINSISNNSDGETFI--SADDLRINLWNLEISNQSFNIVDV 273
+ + H +NS++ + DG TF+ S+ D I LW+L + V
Sbjct: 126 KC------LTTLRGHTDW--VNSVAFSPDG-TFVASSSQDGTIKLWDLR----TGKCV-- 170
Query: 274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT 333
A + T + S F P +L+ SSS G+I+L D+ T E
Sbjct: 171 --ATLTGHTGEVNSVAFSPDGEKLLS-SSSDGTIKLWDLSTGKCLGT----LRGHENG-- 221
Query: 334 RSFFTEIIASISDIKFARNGRHILS--RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCD 391
++ + F+ +G + S D T+++WD+ V T H +
Sbjct: 222 ----------VNSVAFSPDGYLLASGSEDG-TIRVWDLRTGE-CVQTLSGHTN------- 262
Query: 392 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 425
S+ S DG R+A+GS R++
Sbjct: 263 -----SVTS---LAWSPDGKRLASGSADGTIRIW 288
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.8 bits (107), Expect = 3e-05
Identities = 52/288 (18%), Positives = 106/288 (36%), Gaps = 46/288 (15%)
Query: 226 RIYAHAHDYHINSISNNS-DGETFISA---DDLRINLWNLEISNQSFNIVDVKPANMEDL 281
+ HD ++ ++ +S DG + + A D + LW+L + ++
Sbjct: 102 KSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGH------- 154
Query: 282 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 341
+E +TS F P + + SS G+I+L D+R T +
Sbjct: 155 SESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGH----------------T 198
Query: 342 ASISDIKFARNGRHILSRDYM--TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIF 399
+S + F+ +G +++ T++LWD++ +G + + H +
Sbjct: 199 DPVSSLAFSPDGGLLIASGSSDGTIRLWDLS--TGKLLRSTLSGHSDSVV---------- 246
Query: 400 DKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG 459
S DG +A+GS R++ S+ TL + + +P G
Sbjct: 247 ----SSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASG 302
Query: 460 SLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASN 507
S G V R+ + L ++ + L++ P + + S+
Sbjct: 303 SSDGTV-RLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD 349
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 4e-05
Identities = 41/221 (18%), Positives = 73/221 (33%), Gaps = 46/221 (20%)
Query: 225 RRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTE 283
R + H + ++ ++DG S D I LW+LE +
Sbjct: 45 RTLKGHTGP--VRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSY------- 95
Query: 284 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 343
++S F P +L+ SS +I++ D+ T
Sbjct: 96 -VSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTT----------------LRGHTDW 137
Query: 344 ISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKF 402
++ + F+ +G + S T+KLWD+ VAT H +
Sbjct: 138 VNSVAFSPDGTFVASSSQDGTIKLWDLRTGK-CVATLTGHT------------GEVNS-- 182
Query: 403 ECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNP 443
S DG ++ + S +++ S G TL +N
Sbjct: 183 -VAFSPDGEKLLSSSSDGTIKLWDLSTG-KCLGTLRGHENG 221
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.8 bits (107), Expect = 4e-05
Identities = 70/348 (20%), Positives = 117/348 (33%), Gaps = 75/348 (21%)
Query: 82 YSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLW 141
S S ++ P+ L E+ I I + S + L L ++D TIKLW
Sbjct: 35 SSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAF--SPDGELLLSGSSDGTIKLW 92
Query: 142 KVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPP 201
+ + + G H S++ +S D +
Sbjct: 93 DLDNGEKLIKS--------------LEGLHDSSV------------SKLALSSPDGNSIL 126
Query: 202 GGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLW 259
SSL V + T G H + S++ + DG+ S D I LW
Sbjct: 127 LASSSLDGTVKLWDLSTP---GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLW 183
Query: 260 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD 319
+L + + T+ ++S F P ++A SS G+IRL D+ L
Sbjct: 184 DLRTGK--------PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLL- 234
Query: 320 THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL--SRDYMTLKLWDINMDSGPVA 377
+ + +S F+ +G + S D T++LWD+ S +
Sbjct: 235 -------------RSTLSGHSDSVVSS--FSPDGSLLASGSSDG-TIRLWDLRSSSSLLR 278
Query: 378 TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 425
T H + S+ S DG +A+GS R++
Sbjct: 279 TLSGH------------SSSVLS---VAFSPDGKLLASGSSDGTVRLW 311
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.2 bits (100), Expect = 3e-04
Identities = 71/429 (16%), Positives = 134/429 (31%), Gaps = 88/429 (20%)
Query: 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTE 95
D I++I F G+ L +G G + L++ + L S +
Sbjct: 66 DSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSI 125
Query: 96 FQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLL------------STNDKTIKLWKV 143
+ +K ++ IR + + ++ L S+ D TIKLW +
Sbjct: 126 LLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDL 185
Query: 144 QEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG-------ERNFGCASND 196
+ K + P+ S +A+G +
Sbjct: 186 RTGKPLSTLAGH--------TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRST 237
Query: 197 SSFPPGGVSSLRLPVVVTSQETNLVAGCR----RIYA-----------HAHDYHINSISN 241
S V S + + L +G R++ H + S++
Sbjct: 238 LSGHSDSVVS-----SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAF 292
Query: 242 NSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY 300
+ DG+ S D + LW+LE + ++ ++S F P +++
Sbjct: 293 SPDGKLLASGSSDGTVRLWDLETGKL------LSSLTLKGHEGPVSSLSFSPDGSLLVSG 346
Query: 301 SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD 360
S G+IRL D+R E +++ + F+ +GR + S
Sbjct: 347 GSDDGTIRLWDLRTGKP-----------------LKTLEGHSNVLSVSFSPDGRVVSSGS 389
Query: 361 Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 419
T++LWD++ S + S DG +A+GS
Sbjct: 390 TDGTVRLWDLSTGS----------------LLRNLDGHTSRVTSLDFSPDGKSLASGSSD 433
Query: 420 NLFRVFGCS 428
N R++
Sbjct: 434 NTIRLWDLK 442
|
Length = 466 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 514 | |||
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 100.0 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.98 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.98 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.97 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.97 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.97 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.97 | |
| PTZ00421 | 493 | coronin; Provisional | 99.97 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.97 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.97 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.97 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.97 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.97 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.97 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.97 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.96 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.96 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.96 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| PTZ00420 | 568 | coronin; Provisional | 99.96 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.96 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.96 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.96 | |
| PTZ00420 | 568 | coronin; Provisional | 99.96 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.95 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.95 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.95 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.95 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.95 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.95 | |
| PTZ00421 | 493 | coronin; Provisional | 99.95 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.95 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.95 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.95 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.95 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.95 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.95 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.95 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.95 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.95 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.95 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.94 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.94 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.94 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.94 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.94 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.93 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.93 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.93 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.93 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.93 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.92 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.92 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.92 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.92 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.91 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.91 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.91 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.91 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.91 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.9 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.9 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.9 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.9 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.89 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.89 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.89 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.89 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.89 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.89 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.89 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.88 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.86 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.86 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.86 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.85 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.85 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.85 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.85 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.84 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.84 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.84 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.84 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.83 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.83 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.82 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.82 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.81 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.8 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.79 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.79 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.79 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.79 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.79 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.77 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.77 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.77 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.77 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.76 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.75 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.74 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.73 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.73 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.73 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.73 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.73 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.72 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.72 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.7 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.7 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.69 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.68 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.68 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.66 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.65 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.65 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.64 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.63 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.62 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.62 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.62 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.61 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.61 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.59 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.59 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.59 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.58 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.57 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.57 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.57 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.56 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.56 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.53 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.53 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.53 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.53 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.52 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.52 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.52 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.52 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.5 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.49 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.48 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.47 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.46 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.46 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.45 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.42 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.4 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.39 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.39 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.37 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.37 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.35 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.34 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.34 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.29 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.27 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.27 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.26 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.26 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.26 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.25 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.25 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.25 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.24 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.2 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.2 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.19 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.19 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.18 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.18 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.16 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.16 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.15 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.14 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.12 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.08 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.07 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.01 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 99.01 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.01 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.97 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.96 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.95 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.95 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.94 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.91 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.91 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.9 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.89 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.85 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.85 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.76 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.75 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.73 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.71 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.71 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.7 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.69 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.67 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.66 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.62 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.62 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.59 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.59 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.57 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.55 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.55 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.46 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.39 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.39 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.38 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.37 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.36 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.32 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.32 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.29 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.23 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.16 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.12 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.12 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.11 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.09 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.09 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.08 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.08 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.05 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.01 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.0 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 98.0 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.0 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.98 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.95 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.93 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.93 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.91 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.88 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.86 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.85 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.84 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.8 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.78 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.75 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.74 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.73 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.66 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 97.66 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.62 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.6 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.6 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.59 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.56 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.55 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.53 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.51 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.36 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.28 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.24 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.22 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.19 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 97.19 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.18 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.14 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.1 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.06 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.01 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.0 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 96.92 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.91 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.9 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.84 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.84 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.82 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.79 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 96.72 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.66 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.66 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.57 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 96.48 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.41 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 96.34 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.1 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.05 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 95.75 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 95.71 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 95.65 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 95.64 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 95.59 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.56 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 95.55 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.52 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 95.18 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 95.17 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 95.05 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 95.0 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 94.92 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 94.91 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.88 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.66 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 94.6 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 94.54 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 94.5 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 94.45 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 94.21 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 94.05 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 94.02 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 93.84 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 93.5 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.44 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 93.43 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 93.41 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 93.24 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 93.23 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 93.17 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 92.95 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 92.95 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 92.82 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 92.69 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 92.11 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 92.06 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 92.02 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 91.97 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 91.85 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 91.81 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 91.77 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 91.76 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 91.29 | |
| KOG4659 | 1899 | consensus Uncharacterized conserved protein (Rhs f | 90.98 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 90.61 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 90.53 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 90.48 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 90.4 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 90.36 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 90.01 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 89.63 | |
| PRK10115 | 686 | protease 2; Provisional | 89.31 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 88.92 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 88.83 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 88.68 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 88.37 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 88.24 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 88.06 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 87.7 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 86.53 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 86.46 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 85.58 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 85.42 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 85.04 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 84.43 | |
| PRK10115 | 686 | protease 2; Provisional | 84.18 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 83.61 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 83.38 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 83.07 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 82.14 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 82.12 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 81.96 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 81.21 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 80.98 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 80.85 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 80.74 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 80.42 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 80.21 |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-53 Score=358.49 Aligned_cols=324 Identities=15% Similarity=0.283 Sum_probs=276.2
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.++|.|++|+|+|..||+|+.|.++|+||+.+.. ...+.++|.
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeT-----------------------p~~t~KgH~---------- 157 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTET-----------------------PLFTCKGHK---------- 157 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCC-----------------------cceeecCCc----------
Confidence 45899999999999999999999999999999998776 346789998
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|.|++| +|||+.|++|+.||+|++||.++++.. |+
T Consensus 158 --~WVlcvaw--sPDgk~iASG~~dg~I~lwdpktg~~~---------------------------------g~------ 194 (480)
T KOG0271|consen 158 --NWVLCVAW--SPDGKKIASGSKDGSIRLWDPKTGQQI---------------------------------GR------ 194 (480)
T ss_pred --cEEEEEEE--CCCcchhhccccCCeEEEecCCCCCcc---------------------------------cc------
Confidence 99999999 678999999999999999999887521 11
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC-----CCCEEEEe-cCCeEEEEeccCC
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-----DGETFISA-DDLRINLWNLEIS 264 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----~~~~l~s~-~d~~i~iwd~~~~ 264 (514)
.+.+|+..|++++|.| ..++|+++ .||.|+|||+..+
T Consensus 195 -------------------------------------~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~ 237 (480)
T KOG0271|consen 195 -------------------------------------ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG 237 (480)
T ss_pred -------------------------------------cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc
Confidence 1379999999999976 46789998 8999999999854
Q ss_pred CceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccce
Q 010256 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (514)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 344 (514)
.... .+.+|..+|+|+.|--+| ++++|+.|++|++|+...|.++ + .+++|...|
T Consensus 238 ~~~~--------~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~----r------------~lkGHahwv 291 (480)
T KOG0271|consen 238 TCVR--------TLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLC----R------------ELKGHAHWV 291 (480)
T ss_pred eEEE--------EeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHH----H------------hhcccchhe
Confidence 4433 578999999999998776 9999999999999999988874 2 256666788
Q ss_pred eEEEEe-----------cCC-------------------------CEEEEEeC-CeEEEEEccCCCCceeeeeecccccc
Q 010256 345 SDIKFA-----------RNG-------------------------RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRP 387 (514)
Q Consensus 345 ~~~~~s-----------~~g-------------------------~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~ 387 (514)
+.++.+ |.+ ..|++|+| .++.+|+-....+++..+.+|+..++
T Consensus 292 N~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn 371 (480)
T KOG0271|consen 292 NHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVN 371 (480)
T ss_pred eeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhhee
Confidence 888876 223 34999877 99999998876779999999998754
Q ss_pred ccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 388 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 388 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.+.||||+++||+++.|..|++|+..+|+. +.++++|-.+|+.++|+.|.++|++||.|.++++
T Consensus 372 ---------------~V~fSPd~r~IASaSFDkSVkLW~g~tGk~-lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKv 435 (480)
T KOG0271|consen 372 ---------------HVSFSPDGRYIASASFDKSVKLWDGRTGKF-LASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKV 435 (480)
T ss_pred ---------------eEEECCCccEEEEeecccceeeeeCCCcch-hhhhhhccceeEEEEeccCccEEEEcCCCceEEE
Confidence 899999999999999999999999999955 4899999999999999999999999999999999
Q ss_pred eeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecCcEE-EE
Q 010256 468 VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLY-MY 512 (514)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~-i~ 512 (514)
|+.....+..+..+|.++|.+++|+|||..++.|+.|.++ +|
T Consensus 436 ---w~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw 478 (480)
T KOG0271|consen 436 ---WDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLW 478 (480)
T ss_pred ---EEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEee
Confidence 3333333445666799999999999999999988866554 44
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-53 Score=350.36 Aligned_cols=428 Identities=63% Similarity=1.002 Sum_probs=363.2
Q ss_pred ccccccccchhhccccCcccccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccc
Q 010256 11 AAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF 90 (514)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (514)
+.....|+|.|.|+.. +...+.|++|.|+.+|.+||||+.+|+|.++....... .++
T Consensus 6 ~~~~~~w~f~~~~~~~-----vteadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~------------------~ey 62 (433)
T KOG1354|consen 6 KNEILMWKFSQVFGLE-----VTEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK------------------GEY 62 (433)
T ss_pred cchhhhhhhhhhhcce-----echhcceeeEEeecccceEeecCCCCeEEEeecccccc------------------cce
Confidence 4567889999988854 56778999999999999999999999999998653321 378
Q ss_pred eeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecc
Q 010256 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (514)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (514)
++..+++.|+|+|+|+++++++++|+.++|++..+...++..+.|++|++|.+....... ...+...
T Consensus 63 ~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~-~~~~~~~------------ 129 (433)
T KOG1354|consen 63 NFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKK-EGYNLPE------------ 129 (433)
T ss_pred eeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeecccccc-ccccccc------------
Confidence 899999999999999999999999999999998888899999999999999998765332 1111000
Q ss_pred cccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEE
Q 010256 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 250 (514)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 250 (514)
. ...+.-.++++.. +...+......|++.+..+|+-.|++++++.|.+.+++
T Consensus 130 -----------~----------------~~~~~~~~lr~p~-~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS 181 (433)
T KOG1354|consen 130 -----------E----------------GPPGTITSLRLPV-EGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS 181 (433)
T ss_pred -----------c----------------CCCCccceeecee-eccccceeeeeeeeeccccceeEeeeeeecCccceEee
Confidence 0 0112223455554 55666677788999999999999999999999999999
Q ss_pred ecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCC
Q 010256 251 ADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (514)
Q Consensus 251 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 330 (514)
++|-.|.+|.++-..+.+.+++++|..++.....|++..|+|..+++|+..+..|+|++-|+|...+|+.+.+.|+.+++
T Consensus 182 ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 182 ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCC
Q 010256 331 PGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 410 (514)
Q Consensus 331 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 410 (514)
|..+.++.+....|..+.|+++|+|+++.+.-+|++||+....+++.+++.|.....++|.+|++++|++.+.++|+.++
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~ 341 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND 341 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence 99999999999999999999999999999989999999988899999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceE
Q 010256 411 GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLL 490 (514)
Q Consensus 411 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~ 490 (514)
.+++||+..+.+++|++..|.....+++........-.. .....++. +.+-...++.+..+++...|+
T Consensus 342 ~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~--~k~~~V~~----------~g~r~~~~~~vd~ldf~kkil 409 (433)
T KOG1354|consen 342 SYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKV--LKLRLVSS----------SGKRKRDEISVDALDFRKKIL 409 (433)
T ss_pred ceEecccccceEEEecCCCCcceeecccccccCCccccc--ccceeeec----------CCCccccccccchhhhhhHHH
Confidence 999999999999999988887766666655544211111 11111221 222223466677888999999
Q ss_pred EEEEcCCCCEEEEEecCcEEEEeC
Q 010256 491 HLAWHPSENSIACAASNSLYMYYA 514 (514)
Q Consensus 491 ~~~~spd~~~l~~~~~~~~~i~~~ 514 (514)
+.+|||..+.||+++.++++||++
T Consensus 410 h~aWhp~en~ia~aatnnlyif~~ 433 (433)
T KOG1354|consen 410 HTAWHPKENSIAVAATNNLYIFQD 433 (433)
T ss_pred hhccCCccceeeeeecCceEEecC
Confidence 999999999999999999999985
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-46 Score=312.74 Aligned_cols=299 Identities=16% Similarity=0.263 Sum_probs=253.4
Q ss_pred cccccchhhccccCcccccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceee
Q 010256 14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK 93 (514)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (514)
-+-|+... +.....-.+|...|.|++|+|||+.||+|+.||+|++||.++++. +-
T Consensus 139 vR~WD~~T---eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~----------------------~g 193 (480)
T KOG0271|consen 139 VRLWDLDT---ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ----------------------IG 193 (480)
T ss_pred EEeeccCC---CCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc----------------------cc
Confidence 35588766 233334568999999999999999999999999999999988876 34
Q ss_pred eeeccCCCccccccccccccceeEEEEee---CCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecc
Q 010256 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQ---SANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (514)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~v~~i~~~~---~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (514)
..+.+|. ..|++++|.| .+..++|++++.||.|+|||+..+.+...
T Consensus 194 ~~l~gH~------------K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~------------------- 242 (480)
T KOG0271|consen 194 RALRGHK------------KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRT------------------- 242 (480)
T ss_pred ccccCcc------------cceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEE-------------------
Confidence 5688998 8999999977 45667899999999999999987754321
Q ss_pred cccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEE
Q 010256 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 250 (514)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 250 (514)
+.+|+.+|+|+.|.-+| +|++
T Consensus 243 ----------------------------------------------------------lsgHT~~VTCvrwGG~g-liyS 263 (480)
T KOG0271|consen 243 ----------------------------------------------------------LSGHTASVTCVRWGGEG-LIYS 263 (480)
T ss_pred ----------------------------------------------------------eccCccceEEEEEcCCc-eEEe
Confidence 37899999999998776 7888
Q ss_pred e-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEe-----------cCC------------------------
Q 010256 251 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH-----------PTH------------------------ 294 (514)
Q Consensus 251 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~-----------p~~------------------------ 294 (514)
| .|++|++|+...+..+. .+.+|...|+.++.+ |.+
T Consensus 264 gS~DrtIkvw~a~dG~~~r--------~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~ 335 (480)
T KOG0271|consen 264 GSQDRTIKVWRALDGKLCR--------ELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDS 335 (480)
T ss_pred cCCCceEEEEEccchhHHH--------hhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccC
Confidence 8 99999999998655442 678999999988876 223
Q ss_pred CcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCC
Q 010256 295 CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDS 373 (514)
Q Consensus 295 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~ 373 (514)
+..+++|+.|.++.+|+....+.+ .....+|..-|+.+.||||++++|+++- ..|++||.++ +
T Consensus 336 ~erlVSgsDd~tlflW~p~~~kkp---------------i~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t-G 399 (480)
T KOG0271|consen 336 GERLVSGSDDFTLFLWNPFKSKKP---------------ITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT-G 399 (480)
T ss_pred cceeEEecCCceEEEecccccccc---------------hhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCC-c
Confidence 125999999999999997654422 1225678889999999999999999985 9999999998 9
Q ss_pred CceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCC
Q 010256 374 GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR 453 (514)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 453 (514)
+.+.++.+|-.. |+.++|+.|.++|++|+.|.++++|++++. ++...|.+|.+.|.++.|+|||
T Consensus 400 k~lasfRGHv~~---------------VYqvawsaDsRLlVS~SkDsTLKvw~V~tk-Kl~~DLpGh~DEVf~vDwspDG 463 (480)
T KOG0271|consen 400 KFLASFRGHVAA---------------VYQVAWSADSRLLVSGSKDSTLKVWDVRTK-KLKQDLPGHADEVFAVDWSPDG 463 (480)
T ss_pred chhhhhhhccce---------------eEEEEeccCccEEEEcCCCceEEEEEeeee-eecccCCCCCceEEEEEecCCC
Confidence 999999999876 449999999999999999999999999975 6668899999999999999999
Q ss_pred CceeecCCCCeEEE
Q 010256 454 PSRPLGSLSGVVRR 467 (514)
Q Consensus 454 ~~l~s~s~d~~v~i 467 (514)
+.+++|+.|+.+++
T Consensus 464 ~rV~sggkdkv~~l 477 (480)
T KOG0271|consen 464 QRVASGGKDKVLRL 477 (480)
T ss_pred ceeecCCCceEEEe
Confidence 99999999999998
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-47 Score=320.89 Aligned_cols=283 Identities=21% Similarity=0.326 Sum_probs=252.7
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
.++...+|..+.||+|++.||||+.+|.+++|+..+.. ...+|.||.
T Consensus 171 Q~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~-----------------------~~~~l~gH~---------- 217 (459)
T KOG0272|consen 171 QVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN-----------------------LLQTLRGHT---------- 217 (459)
T ss_pred hccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcc-----------------------eeEEEeccc----------
Confidence 46778999999999999999999999999999986553 668899999
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
+.|.++.|+|..++..+++|+.||++++|++.+.....
T Consensus 218 --~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~---------------------------------------- 255 (459)
T KOG0272|consen 218 --SRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQ---------------------------------------- 255 (459)
T ss_pred --cceeeEEEccCCCccceeeeccCCceeeeccCCCcchh----------------------------------------
Confidence 88999999986556789999999999999987643111
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
. +.+|...|..++|+|+|++|+++ .|.+-++||+++.....
T Consensus 256 ------------------------------------~-l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL- 297 (459)
T KOG0272|consen 256 ------------------------------------D-LEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELL- 297 (459)
T ss_pred ------------------------------------h-hhcchhhheeeeecCCCceeeecccccchhhcccccchhhH-
Confidence 1 37888999999999999999999 89999999999877654
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
..++|...|.+++|+||| .++++|+.|..-+|||+|++..+ -++.+|...|.+|+|
T Consensus 298 -------~QEGHs~~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr~i----------------m~L~gH~k~I~~V~f 353 (459)
T KOG0272|consen 298 -------LQEGHSKGVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGRCI----------------MFLAGHIKEILSVAF 353 (459)
T ss_pred -------hhcccccccceeEecCCC-ceeeccCccchhheeecccCcEE----------------EEecccccceeeEeE
Confidence 468999999999999999 89999999999999999999873 346778899999999
Q ss_pred ecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcC-CCCEEEEEeCCCcEEEEec
Q 010256 350 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRVFGC 427 (514)
Q Consensus 350 s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~ 427 (514)
+|+|..|++|+ |++++|||++. .+++.++..|...+. .++|+| .|.+|+|++.|++++||..
T Consensus 354 sPNGy~lATgs~Dnt~kVWDLR~-r~~ly~ipAH~nlVS---------------~Vk~~p~~g~fL~TasyD~t~kiWs~ 417 (459)
T KOG0272|consen 354 SPNGYHLATGSSDNTCKVWDLRM-RSELYTIPAHSNLVS---------------QVKYSPQEGYFLVTASYDNTVKIWST 417 (459)
T ss_pred CCCceEEeecCCCCcEEEeeecc-cccceecccccchhh---------------heEecccCCeEEEEcccCcceeeecC
Confidence 99999999975 59999999998 888999999998754 899998 7889999999999999999
Q ss_pred CCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 428 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.+..+ .+.+.||.+.|-++.+++++.++++++.|+++++
T Consensus 418 ~~~~~-~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KL 456 (459)
T KOG0272|consen 418 RTWSP-LKSLAGHEGKVISLDISPDSQAIATSSFDRTIKL 456 (459)
T ss_pred CCccc-chhhcCCccceEEEEeccCCceEEEeccCceeee
Confidence 88744 4899999999999999999999999999999998
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-42 Score=301.07 Aligned_cols=429 Identities=16% Similarity=0.184 Sum_probs=306.6
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCc-ccCCcccccccccccccCCccceeeeeeccCCCcc------
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTR-DNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEF------ 103 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~------ 103 (514)
+.+|...++-..|||.|.|+|+|...|.|||||....+ ......+.+.+....++|.++.+.+.....-...|
T Consensus 55 YtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~ 134 (603)
T KOG0318|consen 55 YTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLW 134 (603)
T ss_pred eccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEe
Confidence 56899999999999999999999999999999986633 22122234445555778888766554311100000
Q ss_pred cccccc----ccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceee
Q 010256 104 DYLKSL----EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSY 179 (514)
Q Consensus 104 ~~~~~~----~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 179 (514)
+.=.++ .+...|+++.|-|+.+ -+++++++|++|.+|+=...+.......+ ...|. ++.|
T Consensus 135 DSG~SvGei~GhSr~ins~~~KpsRP-fRi~T~sdDn~v~ffeGPPFKFk~s~r~H--------skFV~-------~VRy 198 (603)
T KOG0318|consen 135 DSGNSVGEITGHSRRINSVDFKPSRP-FRIATGSDDNTVAFFEGPPFKFKSSFREH--------SKFVN-------CVRY 198 (603)
T ss_pred cCCCccceeeccceeEeeeeccCCCc-eEEEeccCCCeEEEeeCCCeeeeeccccc--------cccee-------eEEE
Confidence 000000 2238899999977665 47899999999999987666655544444 23344 8899
Q ss_pred ccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccc--cccCccCeEEEEECCCCCEEEEe-cCCeE
Q 010256 180 MANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIY--AHAHDYHINSISNNSDGETFISA-DDLRI 256 (514)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~-~d~~i 256 (514)
+|||..+ ++.+.||.+.+|| =.+.+. ...+ ..+|++.|.+++|+||++.++++ .|.++
T Consensus 199 sPDG~~F------------at~gsDgki~iyD-Gktge~------vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~ 259 (603)
T KOG0318|consen 199 SPDGSRF------------ATAGSDGKIYIYD-GKTGEK------VGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTI 259 (603)
T ss_pred CCCCCeE------------EEecCCccEEEEc-CCCccE------EEEecCCCCccccEEEEEECCCCceEEEecCCceE
Confidence 9999998 9999999999999 322222 2121 25899999999999999999999 99999
Q ss_pred EEEeccCCCceeee-------------------------------ec---c-CCCcccccCCceEEEEEecCCCcEEEEE
Q 010256 257 NLWNLEISNQSFNI-------------------------------VD---V-KPANMEDLTEVITSAEFHPTHCNMLAYS 301 (514)
Q Consensus 257 ~iwd~~~~~~~~~~-------------------------------~~---~-~~~~~~~~~~~i~~v~~~p~~~~~l~~~ 301 (514)
+|||+.+.+....+ ++ . .+..+.+|...|+++..+|++ ..|++|
T Consensus 260 KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~-~~i~Sg 338 (603)
T KOG0318|consen 260 KIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG-KTIYSG 338 (603)
T ss_pred EEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCC-CEEEee
Confidence 99999865322111 00 0 124567899999999999999 999999
Q ss_pred ecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCC---------
Q 010256 302 SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMD--------- 372 (514)
Q Consensus 302 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~--------- 372 (514)
+.||.|.-||..++... + + .-.+|...|.+++.+..+.++.+|-|.++++.++...
T Consensus 339 syDG~I~~W~~~~g~~~----~-~----------~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~ 403 (603)
T KOG0318|consen 339 SYDGHINSWDSGSGTSD----R-L----------AGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVK 403 (603)
T ss_pred ccCceEEEEecCCcccc----c-c----------ccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceee
Confidence 99999999999887642 0 0 0145778899999988788888887789999877431
Q ss_pred --CCceeeeeeccc----------c--ccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCc-eeeeee
Q 010256 373 --SGPVATFQVHEH----------L--RPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS-AESTTL 437 (514)
Q Consensus 373 --~~~~~~~~~~~~----------~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~ 437 (514)
.+|...-....+ . ..........+..+...+++++|++.+++.|+.||.|+||.+..+. +....+
T Consensus 404 lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~ 483 (603)
T KOG0318|consen 404 LGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKL 483 (603)
T ss_pred cCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeee
Confidence 111110000000 0 0000111112223345689999999999999999999999998754 333678
Q ss_pred cCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccc-cccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 438 EASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFD-FSMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 438 ~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
..|..+++.++++||+.|||++...+.+-+++-.. .+....... |...|++++|+|+.+++|+|+ +..++||.
T Consensus 484 ~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s---~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 484 LEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVAS---REVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYS 558 (603)
T ss_pred ecccCCceEEEECCCCcEEEEeccCCcEEEEEccc---CceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEE
Confidence 89999999999999999999999999999932221 112222223 899999999999999999999 77888886
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-45 Score=298.02 Aligned_cols=440 Identities=50% Similarity=0.768 Sum_probs=348.8
Q ss_pred cccccchhhccccCcccccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceee
Q 010256 14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK 93 (514)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (514)
...|+|.|+||++.........+.|+++.|...|.||++|...|+|.+|...... .=++++.
T Consensus 5 n~~~kf~QCfgdk~d~~~~tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~------------------~ceykf~ 66 (460)
T COG5170 5 NEILKFKQCFGDKLDLNSSTEADKITAVEFDETGLYLATGDKGGRVVLFEREKSY------------------GCEYKFF 66 (460)
T ss_pred hhhhhhHhhhcchhhcccccccceeeEEEeccccceEeecCCCceEEEeeccccc------------------ccchhhh
Confidence 3569999999999999999999999999999999999999999999999965433 1267889
Q ss_pred eeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceeccccc
Q 010256 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS 173 (514)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 173 (514)
.+|++|+++|+|++++++++.|+.|.|+.......++..+.|++|++|.+....++.+.+-+....
T Consensus 67 teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~-------------- 132 (460)
T COG5170 67 TEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDS-------------- 132 (460)
T ss_pred hhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccc--------------
Confidence 999999999999999999999999999866666688899999999999998876554443332211
Q ss_pred CCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecC
Q 010256 174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADD 253 (514)
Q Consensus 174 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d 253 (514)
+ -+|-+..+ .....+++.. +..........+.+.+...|.-.|+++.|+.|.+.+++++|
T Consensus 133 ---~-~~~~~g~~---------------~s~~~l~lpr-ls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSaDd 192 (460)
T COG5170 133 ---F-HSPMGGPL---------------TSTKELLLPR-LSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSADD 192 (460)
T ss_pred ---c-ccccCCCc---------------CCHHHhhccc-ccccceEEEeccceeccccceeEeeeeeecCchheeeeccc
Confidence 0 11111111 0112233332 23333333345566666889999999999999999999999
Q ss_pred CeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCc
Q 010256 254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT 333 (514)
Q Consensus 254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 333 (514)
-.|.+|+++.....+.+++++|..++.....|++..|+|..++.|...+..|.|++-|+|...+|....+.++...++..
T Consensus 193 LrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~ 272 (460)
T COG5170 193 LRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVD 272 (460)
T ss_pred eeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCccc
Confidence 99999999999999999999999998888999999999998899999999999999999999998887888888777777
Q ss_pred cceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEE
Q 010256 334 RSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 413 (514)
Q Consensus 334 ~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 413 (514)
..++.+....|..+.|+++|+++++.+.-+|+|||++....++.++..|......++++|++++|++.+.+.||.|.+.+
T Consensus 273 ~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v 352 (460)
T COG5170 273 VDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHV 352 (460)
T ss_pred chhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccc
Confidence 78888888999999999999999999889999999999889999999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEecCCCcee----eeeecCCCcc---eeEEE--------ECCCCCceeecCCCCeEEEeeCCCCCcccc
Q 010256 414 ATGSYSNLFRVFGCSEGSAE----STTLEASKNP---MRRQV--------QTPSRPSRPLGSLSGVVRRVKGADNSALDA 478 (514)
Q Consensus 414 ~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~~---v~~~~--------~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~ 478 (514)
++|+..+...+|-..+.... ...+..+..+ +.+.. ...+.....+.+.+|.+.. +..
T Consensus 353 ~sgsy~NNfgiyp~~ssg~~D~g~vv~~ad~~a~~~~~k~~~nnv~kkd~~kn~~~rs~ss~a~g~~~~--~eD------ 424 (460)
T COG5170 353 LSGSYSNNFGIYPTDSSGFKDVGHVVNLADGSAEDFKVKCETNNVEKKDKLKNNDWRSVSSSADGFVVA--CED------ 424 (460)
T ss_pred cccccccceeeeccccCCCCcceEEEecccCCcccccCcccccccccccccccccccccccccCcceee--ccC------
Confidence 99999999999885443211 1122222111 11110 1112222445555555554 111
Q ss_pred CCcccccccceEEEEEcCCCCEEEEEecCcEEEEeC
Q 010256 479 NGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 514 (514)
Q Consensus 479 ~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~i~~~ 514 (514)
.+.++....|.+..|+|-...+|++..+.+++|++
T Consensus 425 -~d~ld~~k~ilh~sWhp~e~svaiaatnnlfvfs~ 459 (460)
T COG5170 425 -PDNLDLLKKILHRSWHPFEDSVAIAATNNLFVFSK 459 (460)
T ss_pred -cchhHHHHHHHhhccCCcccceeeeecCceEEEec
Confidence 23445678899999999999999999999999975
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=294.36 Aligned_cols=276 Identities=17% Similarity=0.229 Sum_probs=236.9
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
.+|..+.| +.++..|+||+.+|.+++|+..+......
T Consensus 176 rPis~~~f--S~ds~~laT~swsG~~kvW~~~~~~~~~~----------------------------------------- 212 (459)
T KOG0272|consen 176 RPISGCSF--SRDSKHLATGSWSGLVKVWSVPQCNLLQT----------------------------------------- 212 (459)
T ss_pred CcceeeEe--ecCCCeEEEeecCCceeEeecCCcceeEE-----------------------------------------
Confidence 67888888 56778999999999999999876532221
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC--CCEEEEe-cCCeEEEEeccCCCceee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
+.+|...|.++.|+|. +..+++| .||++++|++++....
T Consensus 213 ------------------------------------l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l-- 254 (459)
T KOG0272|consen 213 ------------------------------------LRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPL-- 254 (459)
T ss_pred ------------------------------------EeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcch--
Confidence 3789999999999997 6789999 9999999999865443
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
..+++|...|..++|+|+| ++|++++.|.+-++||++++.... ...||...|.+++|
T Consensus 255 ------~~l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~ElL----------------~QEGHs~~v~~iaf 311 (459)
T KOG0272|consen 255 ------QDLEGHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKSELL----------------LQEGHSKGVFSIAF 311 (459)
T ss_pred ------hhhhcchhhheeeeecCCC-ceeeecccccchhhcccccchhhH----------------hhcccccccceeEe
Confidence 2678999999999999999 999999999999999999987631 13577889999999
Q ss_pred ecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecC
Q 010256 350 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 350 s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 428 (514)
.|||.++++|+ |..-+|||+++ ++++..+.+|... |++++|+|+|..||||+.|++++|||++
T Consensus 312 ~~DGSL~~tGGlD~~~RvWDlRt-gr~im~L~gH~k~---------------I~~V~fsPNGy~lATgs~Dnt~kVWDLR 375 (459)
T KOG0272|consen 312 QPDGSLAATGGLDSLGRVWDLRT-GRCIMFLAGHIKE---------------ILSVAFSPNGYHLATGSSDNTCKVWDLR 375 (459)
T ss_pred cCCCceeeccCccchhheeeccc-CcEEEEecccccc---------------eeeEeECCCceEEeecCCCCcEEEeeec
Confidence 99999999976 58889999998 9999999998765 4599999999999999999999999999
Q ss_pred CCceeeeeecCCCcceeEEEECC-CCCceeecCCCCeEEEe--eCCCCCccccCCcccccccceEEEEEcCCCCEEEEEe
Q 010256 429 EGSAESTTLEASKNPMRRQVQTP-SRPSRPLGSLSGVVRRV--KGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 505 (514)
Q Consensus 429 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~s~d~~v~i~--~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~ 505 (514)
... ...++.+|.+-|+.+.|+| .|.+|+|+|.|++++++ .++.+. ....+|.+.|.+++.+||+.+|++++
T Consensus 376 ~r~-~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~-----ksLaGHe~kV~s~Dis~d~~~i~t~s 449 (459)
T KOG0272|consen 376 MRS-ELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPL-----KSLAGHEGKVISLDISPDSQAIATSS 449 (459)
T ss_pred ccc-cceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccc-----hhhcCCccceEEEEeccCCceEEEec
Confidence 764 4588999999999999998 88999999999999992 334333 34456999999999999999999888
Q ss_pred -cCcEEEEeC
Q 010256 506 -SNSLYMYYA 514 (514)
Q Consensus 506 -~~~~~i~~~ 514 (514)
+..+.+|+.
T Consensus 450 ~DRT~KLW~~ 459 (459)
T KOG0272|consen 450 FDRTIKLWRP 459 (459)
T ss_pred cCceeeeccC
Confidence 888888863
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=269.01 Aligned_cols=293 Identities=16% Similarity=0.229 Sum_probs=245.9
Q ss_pred eeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceeccc
Q 010256 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (514)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (514)
..+.++||. .+|.++.| ++|.+++++++.||.+.|||.-+..-...++++ +..|.
T Consensus 47 ~rr~LkGH~------------~Ki~~~~w--s~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~--------s~WVM--- 101 (343)
T KOG0286|consen 47 TRRTLKGHL------------NKIYAMDW--STDSRRIVSASQDGKLIVWDSFTTNKVHAIPLP--------SSWVM--- 101 (343)
T ss_pred eEEEecccc------------cceeeeEe--cCCcCeEEeeccCCeEEEEEcccccceeEEecC--------ceeEE---
Confidence 346799998 99999999 678889999999999999998877666666655 45565
Q ss_pred ccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe
Q 010256 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 251 (514)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 251 (514)
..+|+|.|+.+ +.|+-|+...||+ +...+........+. +.+|.+.+.+..|-+|+++|.+.
T Consensus 102 ----tCA~sPSg~~V------------AcGGLdN~Csiy~-ls~~d~~g~~~v~r~-l~gHtgylScC~f~dD~~ilT~S 163 (343)
T KOG0286|consen 102 ----TCAYSPSGNFV------------ACGGLDNKCSIYP-LSTRDAEGNVRVSRE-LAGHTGYLSCCRFLDDNHILTGS 163 (343)
T ss_pred ----EEEECCCCCeE------------EecCcCceeEEEe-cccccccccceeeee-ecCccceeEEEEEcCCCceEecC
Confidence 88999999998 9999999999999 554432222222333 48999999999999866544444
Q ss_pred cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEec-CCCcEEEEEecCCeEEEEEcCCCccccccccceeccCC
Q 010256 252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (514)
Q Consensus 252 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 330 (514)
.|.++.+||++++++.. .+.+|.+.|.+++++| ++ +.|++|+-|+..+|||+|.+.. .++
T Consensus 164 GD~TCalWDie~g~~~~--------~f~GH~gDV~slsl~p~~~-ntFvSg~cD~~aklWD~R~~~c----~qt------ 224 (343)
T KOG0286|consen 164 GDMTCALWDIETGQQTQ--------VFHGHTGDVMSLSLSPSDG-NTFVSGGCDKSAKLWDVRSGQC----VQT------ 224 (343)
T ss_pred CCceEEEEEcccceEEE--------EecCCcccEEEEecCCCCC-CeEEecccccceeeeeccCcce----eEe------
Confidence 99999999999877654 5789999999999999 65 9999999999999999999876 333
Q ss_pred CCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCC
Q 010256 331 PGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (514)
Q Consensus 331 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 409 (514)
|.+|.+.|+++.|.|+|.-+++|+| ++.++||++. .+.+..+.... .+.+|++++||..
T Consensus 225 ------F~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRa-D~~~a~ys~~~-------------~~~gitSv~FS~S 284 (343)
T KOG0286|consen 225 ------FEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRA-DQELAVYSHDS-------------IICGITSVAFSKS 284 (343)
T ss_pred ------ecccccccceEEEccCCCeeeecCCCceeEEEeecC-CcEEeeeccCc-------------ccCCceeEEEccc
Confidence 5666789999999999999999987 9999999997 77777765322 2345679999999
Q ss_pred CCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 410 GGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 410 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
|++|++|..|..+.+||.-.+ .....|.+|...|..+..+|||--+++||+|.++||
T Consensus 285 GRlLfagy~d~~c~vWDtlk~-e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lri 341 (343)
T KOG0286|consen 285 GRLLFAGYDDFTCNVWDTLKG-ERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRI 341 (343)
T ss_pred ccEEEeeecCCceeEeecccc-ceEEEeeccCCeeEEEEECCCCcEEEecchhHheee
Confidence 999999999999999998876 445899999999999999999999999999999998
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=300.95 Aligned_cols=416 Identities=14% Similarity=0.156 Sum_probs=311.2
Q ss_pred cccccchhhccccCcccccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceee
Q 010256 14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK 93 (514)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (514)
++.|.+.. +.....-...|..+|.-++|+|.|..||+|+.||.+++||+..+. ..
T Consensus 86 lrv~~L~t--gk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~-----------------------~t 140 (775)
T KOG0319|consen 86 LRVWSLPT--GKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGY-----------------------CT 140 (775)
T ss_pred EEEEEccc--chHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCE-----------------------EE
Confidence 34455554 222222345699999999999999999999999999999998665 55
Q ss_pred eeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEE-EEEeeccCCCccccCCcceecccc
Q 010256 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV-KKVFDWNVHPEKAAGNGPIFGSHV 172 (514)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~ 172 (514)
..|+||. +.|.++.|.|..+...|++|..|+++++||+..+.. ......+. +.+.
T Consensus 141 h~fkG~g------------GvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~--------S~vt---- 196 (775)
T KOG0319|consen 141 HSFKGHG------------GVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHK--------SAVT---- 196 (775)
T ss_pred EEecCCC------------ceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhh--------hhee----
Confidence 7899998 899999999988877889999999999999986543 22222221 1222
Q ss_pred cCCceeeccCCCcccccc----------------------------------CCCCCCcccCCCCCCcEEeceeeccccc
Q 010256 173 SAIPKSYMANGGCGERNF----------------------------------GCASNDSSFPPGGVSSLRLPVVVTSQET 218 (514)
Q Consensus 173 ~~~~~~~~~~~~~l~~~~----------------------------------~~~~~~~~~~~~~~~~i~i~~~~~~~~~ 218 (514)
++.+++|+..+.... -.....++++.+++|.++.||. .+...
T Consensus 197 ---sL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~-es~~~ 272 (775)
T KOG0319|consen 197 ---SLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDS-ESGKC 272 (775)
T ss_pred ---eeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEec-ccchh
Confidence 555555544331110 0111357777888888888873 21100
Q ss_pred c-----c---cc--------------------------------------------------------------------
Q 010256 219 N-----L---VA-------------------------------------------------------------------- 222 (514)
Q Consensus 219 ~-----~---~~-------------------------------------------------------------------- 222 (514)
. . ..
T Consensus 273 ~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~ 352 (775)
T KOG0319|consen 273 VYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYT 352 (775)
T ss_pred hhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEe
Confidence 0 0 00
Q ss_pred --cccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEE
Q 010256 223 --GCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA 299 (514)
Q Consensus 223 --~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~ 299 (514)
..-.....+|+..|.++....+|-+|++| .|.++++|.++.+...... -....+|.+.|.+++++..+..+|+
T Consensus 353 ~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~----~a~~~gH~~svgava~~~~~asffv 428 (775)
T KOG0319|consen 353 LPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLC----VAQANGHTNSVGAVAGSKLGASFFV 428 (775)
T ss_pred cCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhh----hhhhcccccccceeeecccCccEEE
Confidence 00011236788888888866778899999 8999999988533222111 1245789999999999888888999
Q ss_pred EEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceee
Q 010256 300 YSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVAT 378 (514)
Q Consensus 300 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~ 378 (514)
+++.|+++++|++...+.... ...+. .+.....|...|++++++|+.+++++|+. .+.+||++.. ...+.+
T Consensus 429 svS~D~tlK~W~l~~s~~~~~-~~~~~------~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~-~~l~~v 500 (775)
T KOG0319|consen 429 SVSQDCTLKLWDLPKSKETAF-PIVLT------CRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ-LRLLGV 500 (775)
T ss_pred EecCCceEEEecCCCcccccc-cceeh------hhHHHHhhcccccceEecCCCceEEecccccceeeecccC-ceEEEE
Confidence 999999999999987332111 11111 11223568889999999999999999875 9999999995 899999
Q ss_pred eeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceee
Q 010256 379 FQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPL 458 (514)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 458 (514)
+.+|... |+++.|+|..+.++|+|.|++|+||.+.+..++ ++++||...|....|-.+++.|+|
T Consensus 501 LsGH~RG---------------vw~V~Fs~~dq~laT~SgD~TvKIW~is~fSCl-kT~eGH~~aVlra~F~~~~~qliS 564 (775)
T KOG0319|consen 501 LSGHTRG---------------VWCVSFSKNDQLLATCSGDKTVKIWSISTFSCL-KTFEGHTSAVLRASFIRNGKQLIS 564 (775)
T ss_pred eeCCccc---------------eEEEEeccccceeEeccCCceEEEEEeccceee-eeecCccceeEeeeeeeCCcEEEe
Confidence 9999854 679999999999999999999999999998776 899999999999999999999999
Q ss_pred cCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecCcEEEEe
Q 010256 459 GSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 459 ~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~i~~ 513 (514)
++.||-+++ |.....+-....-.|.+.|.+++-+|.+.++++|+.|+.++|.
T Consensus 565 ~~adGliKl---Wnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~w 616 (775)
T KOG0319|consen 565 AGADGLIKL---WNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFW 616 (775)
T ss_pred ccCCCcEEE---EeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEe
Confidence 999999999 5444333444445699999999999999999999877766653
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=289.70 Aligned_cols=384 Identities=16% Similarity=0.235 Sum_probs=291.9
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|-+.|+++.|+.|.++|++|+.|-.++||.++..+.. ....+.+|.
T Consensus 141 ~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~---------------------~~~~l~gHk---------- 189 (893)
T KOG0291|consen 141 YLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNL---------------------FTYALNGHK---------- 189 (893)
T ss_pred ecCCccceeEEEeccCCceEEeccccceEEEEEecccccc---------------------ceEeccCCC----------
Confidence 5689999999999999999999999999999999866532 445688998
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCcc--EEEEE---------eeccCCCccc--------cCCcceeccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK--KVKKV---------FDWNVHPEKA--------AGNGPIFGSH 171 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~--~~~~~---------~~~~~~~~~~--------~~~~~v~~~~ 171 (514)
+.|...-| ..+...+++.+.||.+.+|..... ..... .......+.. ..........
T Consensus 190 --d~VvacfF--~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~ 265 (893)
T KOG0291|consen 190 --DYVVACFF--GANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNS 265 (893)
T ss_pred --cceEEEEe--ccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccc
Confidence 88888888 566668999999999999987621 00000 0000000000 0000000001
Q ss_pred ccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe
Q 010256 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 251 (514)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 251 (514)
+...+.+|.+.-+.+ +++-..|...+|. +..... ... +.-...+|..++|+..|.+|+.|
T Consensus 266 ~kvtaa~fH~~t~~l------------vvgFssG~f~Lye-lP~f~l------ih~-LSis~~~I~t~~~N~tGDWiA~g 325 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLL------------VVGFSSGEFGLYE-LPDFNL------IHS-LSISDQKILTVSFNSTGDWIAFG 325 (893)
T ss_pred cceeeeeccCCceEE------------EEEecCCeeEEEe-cCCceE------EEE-eecccceeeEEEecccCCEEEEc
Confidence 122244455555555 8888999998888 333222 222 13344679999999999999998
Q ss_pred --cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccC
Q 010256 252 --DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 329 (514)
Q Consensus 252 --~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 329 (514)
.=|.+-+|+.+...-.. ..++|...+++++++||| +++++|+.||.|++||...+-+.
T Consensus 326 ~~klgQLlVweWqsEsYVl--------KQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~SgfC~----------- 385 (893)
T KOG0291|consen 326 CSKLGQLLVWEWQSESYVL--------KQQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQSGFCF----------- 385 (893)
T ss_pred CCccceEEEEEeeccceee--------eccccccceeeEEECCCC-cEEEeccCCCcEEEEeccCceEE-----------
Confidence 46899999998544332 468899999999999999 89999999999999999988763
Q ss_pred CCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcC
Q 010256 330 APGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 408 (514)
Q Consensus 330 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (514)
.+|..|++.|+.+.|+..|+.+++.+ ||+|+.||+.. .+..+++..+.... ..+++..|
T Consensus 386 -----vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR-YrNfRTft~P~p~Q--------------fscvavD~ 445 (893)
T KOG0291|consen 386 -----VTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR-YRNFRTFTSPEPIQ--------------FSCVAVDP 445 (893)
T ss_pred -----EEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc-cceeeeecCCCcee--------------eeEEEEcC
Confidence 23667789999999999999999976 69999999997 88888888766432 22789999
Q ss_pred CCCEEEEEeCCC-cEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCccccccc
Q 010256 409 DGGRVATGSYSN-LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSM 487 (514)
Q Consensus 409 ~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~ 487 (514)
.|.++++|+.|. .|.+|++++| ++..++.||.+||..+.|+|++..|+++|+|.+||+ |..-........+++..
T Consensus 446 sGelV~AG~~d~F~IfvWS~qTG-qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRi---W~if~s~~~vEtl~i~s 521 (893)
T KOG0291|consen 446 SGELVCAGAQDSFEIFVWSVQTG-QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRI---WDIFSSSGTVETLEIRS 521 (893)
T ss_pred CCCEEEeeccceEEEEEEEeecC-eeeehhcCCCCcceeeEEccccCeEEeccccceEEE---EEeeccCceeeeEeecc
Confidence 999999999876 6999999998 566899999999999999999999999999999999 32222112234455789
Q ss_pred ceEEEEEcCCCCEEEEEecC-cEEEEe
Q 010256 488 KLLHLAWHPSENSIACAASN-SLYMYY 513 (514)
Q Consensus 488 ~v~~~~~spd~~~l~~~~~~-~~~i~~ 513 (514)
.++.++|+|||+-||+++-+ .+-+|.
T Consensus 522 dvl~vsfrPdG~elaVaTldgqItf~d 548 (893)
T KOG0291|consen 522 DVLAVSFRPDGKELAVATLDGQITFFD 548 (893)
T ss_pred ceeEEEEcCCCCeEEEEEecceEEEEE
Confidence 99999999999999998844 777775
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-38 Score=273.44 Aligned_cols=383 Identities=14% Similarity=0.214 Sum_probs=287.3
Q ss_pred cccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeec---cCCCccccccc
Q 010256 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ---SHEPEFDYLKS 108 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~~~~~~~ 108 (514)
..|...|+|+.|+|||+++|+.+.||.|.|||=.+++.. .++. +|.
T Consensus 187 r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~v-----------------------g~l~~~~aHk-------- 235 (603)
T KOG0318|consen 187 REHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKV-----------------------GELEDSDAHK-------- 235 (603)
T ss_pred cccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEE-----------------------EEecCCCCcc--------
Confidence 478999999999999999999999999999998887743 3444 676
Q ss_pred cccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccc
Q 010256 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (514)
Q Consensus 109 ~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (514)
+.|.++.| +||++.+++++.|.++||||+.+.++.....+... +..... .+.|. ...|
T Consensus 236 ----GsIfalsW--sPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~---------v~dqqv---G~lWq--kd~l-- 293 (603)
T KOG0318|consen 236 ----GSIFALSW--SPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGST---------VEDQQV---GCLWQ--KDHL-- 293 (603)
T ss_pred ----ccEEEEEE--CCCCceEEEecCCceEEEEEeeccceEEEeecCCc---------hhceEE---EEEEe--CCeE--
Confidence 99999999 67888999999999999999999988777665422 111111 22333 3333
Q ss_pred ccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCce
Q 010256 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (514)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 267 (514)
++.+.+|.|.+++ ....+ ..+. ..+|...|+++..+|++++|.+| .||.|.-|+..++...
T Consensus 294 ----------ItVSl~G~in~ln-~~d~~------~~~~-i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~ 355 (603)
T KOG0318|consen 294 ----------ITVSLSGTINYLN-PSDPS------VLKV-ISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD 355 (603)
T ss_pred ----------EEEEcCcEEEEec-ccCCC------hhhe-ecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence 7788889998877 32222 2223 38999999999999999999999 8999999999866543
Q ss_pred eeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCC---------------
Q 010256 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG--------------- 332 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~--------------- 332 (514)
. + .-+.|...|.+++.+..+ .+++.+.|.++++.++..+....... ++....|.
T Consensus 356 ~-~------~g~~h~nqI~~~~~~~~~--~~~t~g~Dd~l~~~~~~~~~~t~~~~--~~lg~QP~~lav~~d~~~avv~~ 424 (603)
T KOG0318|consen 356 R-L------AGKGHTNQIKGMAASESG--ELFTIGWDDTLRVISLKDNGYTKSEV--VKLGSQPKGLAVLSDGGTAVVAC 424 (603)
T ss_pred c-c------ccccccceEEEEeecCCC--cEEEEecCCeEEEEecccCcccccce--eecCCCceeEEEcCCCCEEEEEe
Confidence 1 1 126689999999988765 57888999999999885433211100 01100000
Q ss_pred --ccceeecc--------ccceeEEEEecCCCEEEEEe-CCeEEEEEccCCC-CceeeeeeccccccccccccccCCccc
Q 010256 333 --TRSFFTEI--------IASISDIKFARNGRHILSRD-YMTLKLWDINMDS-GPVATFQVHEHLRPKLCDLYENDSIFD 400 (514)
Q Consensus 333 --~~~~~~~~--------~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (514)
....++.+ .-...+++++|++..++.|. |+.|+||.+.-.. .....+..|...
T Consensus 425 ~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~--------------- 489 (603)
T KOG0318|consen 425 ISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAA--------------- 489 (603)
T ss_pred cCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCC---------------
Confidence 01111111 22467899999999999975 5999999998411 223334445443
Q ss_pred eeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCC
Q 010256 401 KFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANG 480 (514)
Q Consensus 401 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~ 480 (514)
++++++|||+.|||++...+.+.+||+.+.+.....+.-|+..|.+++|+|+.+++|+||.|..|.++.-.+|... ..
T Consensus 490 iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~--i~ 567 (603)
T KOG0318|consen 490 ITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH--II 567 (603)
T ss_pred ceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhh--eE
Confidence 4499999999999999999999999999886655666679999999999999999999999999999666666642 22
Q ss_pred cccccccceEEEEEcCCCCEEEEEecCcEEEEe
Q 010256 481 NAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 481 ~~~~~~~~v~~~~~spd~~~l~~~~~~~~~i~~ 513 (514)
....|...|+.++|-.+...+-+|.+-.+.+|+
T Consensus 568 iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~ 600 (603)
T KOG0318|consen 568 IKNAHLGGVNSVAWLDESTVVSSGQDANIKVWN 600 (603)
T ss_pred eccccccCceeEEEecCceEEeccCcceeEEec
Confidence 233578889999998888877788899999997
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=254.26 Aligned_cols=298 Identities=14% Similarity=0.242 Sum_probs=238.6
Q ss_pred cccccccceEEEEEcCC-CCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccc
Q 010256 30 EEVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (514)
Q Consensus 30 ~~~~h~~~V~~~~~s~~-g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (514)
...+|++.|+.++..+. .+.|++++.|..+.+|++..... +-+...+.+.||+
T Consensus 10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~------------------~~G~~~r~~~GHs-------- 63 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI------------------KYGVPVRRLTGHS-------- 63 (315)
T ss_pred eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc------------------ccCceeeeeeccc--------
Confidence 45689999999999996 56899999999999999876532 2344577889998
Q ss_pred cccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccc
Q 010256 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (514)
Q Consensus 109 ~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (514)
..|..+.. +++|++.++++.|+++++||+.+++..+.+..+. ..|. ++++++|.+++
T Consensus 64 ----H~v~dv~~--s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~--------~dVl-------sva~s~dn~qi-- 120 (315)
T KOG0279|consen 64 ----HFVSDVVL--SSDGNFALSASWDGTLRLWDLATGESTRRFVGHT--------KDVL-------SVAFSTDNRQI-- 120 (315)
T ss_pred ----eEecceEE--ccCCceEEeccccceEEEEEecCCcEEEEEEecC--------CceE-------EEEecCCCcee--
Confidence 77999999 6788899999999999999999998777776663 3344 88999999999
Q ss_pred ccCCCCCCcccCCCCCCcEEeceeecccccccccccccccc-ccCccCeEEEEECCC--CCEEEEe-cCCeEEEEeccCC
Q 010256 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA-HAHDYHINSISNNSD--GETFISA-DDLRINLWNLEIS 264 (514)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~ 264 (514)
++|+.|.+|++|+++.. +.-+.. ..+.+.|.|+.|+|+ ..+|+++ .|++|++||+++-
T Consensus 121 ----------vSGSrDkTiklwnt~g~--------ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~ 182 (315)
T KOG0279|consen 121 ----------VSGSRDKTIKLWNTLGV--------CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC 182 (315)
T ss_pred ----------ecCCCcceeeeeeeccc--------EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc
Confidence 99999999999993322 222221 234789999999998 7888888 9999999999854
Q ss_pred CceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccce
Q 010256 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (514)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 344 (514)
+.. ..+.+|.+.++.++++||| .++++|+.||.+.+||++.++. ++.++ |...|
T Consensus 183 ~l~--------~~~~gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~~k~----lysl~-------------a~~~v 236 (315)
T KOG0279|consen 183 QLR--------TTFIGHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNEGKN----LYSLE-------------AFDIV 236 (315)
T ss_pred chh--------hccccccccEEEEEECCCC-CEEecCCCCceEEEEEccCCce----eEecc-------------CCCeE
Confidence 433 2678899999999999999 8999999999999999999876 33333 34689
Q ss_pred eEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccc-cccccccccCCccceeeEEEcCCCCEEEEEeCCCcEE
Q 010256 345 SDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLR-PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 423 (514)
Q Consensus 345 ~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 423 (514)
.+++|+|+.-.|+.+.+..|+|||+.. +..+..+....... .+. +... -.+++|++||..|++|-.|+.|+
T Consensus 237 ~sl~fspnrywL~~at~~sIkIwdl~~-~~~v~~l~~d~~g~s~~~------~~~~-clslaws~dG~tLf~g~td~~ir 308 (315)
T KOG0279|consen 237 NSLCFSPNRYWLCAATATSIKIWDLES-KAVVEELKLDGIGPSSKA------GDPI-CLSLAWSADGQTLFAGYTDNVIR 308 (315)
T ss_pred eeEEecCCceeEeeccCCceEEEeccc-hhhhhhcccccccccccc------CCcE-EEEEEEcCCCcEEEeeecCCcEE
Confidence 999999998888888887899999997 77776665432211 000 0011 23789999999999999999999
Q ss_pred EEecC
Q 010256 424 VFGCS 428 (514)
Q Consensus 424 iwd~~ 428 (514)
+|.+.
T Consensus 309 v~qv~ 313 (315)
T KOG0279|consen 309 VWQVA 313 (315)
T ss_pred EEEee
Confidence 99875
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=256.64 Aligned_cols=286 Identities=19% Similarity=0.343 Sum_probs=228.7
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|.++.|++|.++|++++.||.+.|||.-+.... ..+.-..
T Consensus 51 LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~-----------------------haipl~s---------- 97 (343)
T KOG0286|consen 51 LKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV-----------------------HAIPLPS---------- 97 (343)
T ss_pred ecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccce-----------------------eEEecCc----------
Confidence 4689999999999999999999999999999997655432 1111111
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccE----EEEEeeccCCCccccCCcceecccccCCceeeccCCCcc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK----VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 186 (514)
..|...+|+ |.|+++++|+.|+...||++.+.+ ......+..+ .+.+. +..|.+|+++
T Consensus 98 --~WVMtCA~s--PSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gH------tgylS-------cC~f~dD~~i- 159 (343)
T KOG0286|consen 98 --SWVMTCAYS--PSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGH------TGYLS-------CCRFLDDNHI- 159 (343)
T ss_pred --eeEEEEEEC--CCCCeEEecCcCceeEEEecccccccccceeeeeecCc------cceeE-------EEEEcCCCce-
Confidence 678999995 556699999999999999998541 1122222222 23332 5667776655
Q ss_pred ccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC-CCCEEEEe-cCCeEEEEeccCC
Q 010256 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEIS 264 (514)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~ 264 (514)
++++.|.+..+||| .. ++....| .+|.+.|.+++++| +++.+++| -|+..++||++.+
T Consensus 160 ------------lT~SGD~TCalWDi-e~------g~~~~~f-~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~ 219 (343)
T KOG0286|consen 160 ------------LTGSGDMTCALWDI-ET------GQQTQVF-HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG 219 (343)
T ss_pred ------------EecCCCceEEEEEc-cc------ceEEEEe-cCCcccEEEEecCCCCCCeEEecccccceeeeeccCc
Confidence 89999999999992 22 3333444 89999999999999 89999999 8999999999966
Q ss_pred CceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccce
Q 010256 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (514)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 344 (514)
... +++.+|...|.++.|.|+| .-|++|+.|++.|+||+|..+.+ ..|.... ...+|
T Consensus 220 ~c~--------qtF~ghesDINsv~ffP~G-~afatGSDD~tcRlyDlRaD~~~----a~ys~~~----------~~~gi 276 (343)
T KOG0286|consen 220 QCV--------QTFEGHESDINSVRFFPSG-DAFATGSDDATCRLYDLRADQEL----AVYSHDS----------IICGI 276 (343)
T ss_pred cee--------EeecccccccceEEEccCC-CeeeecCCCceeEEEeecCCcEE----eeeccCc----------ccCCc
Confidence 433 2789999999999999999 89999999999999999987653 3333221 23589
Q ss_pred eEEEEecCCCEEEEE-eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEE
Q 010256 345 SDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 423 (514)
Q Consensus 345 ~~~~~s~~g~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 423 (514)
++++||..|++|++| .|.++.+||.-. ++.+..+.+|+..+ .++..+|||.-+++|+.|..++
T Consensus 277 tSv~FS~SGRlLfagy~d~~c~vWDtlk-~e~vg~L~GHeNRv---------------Scl~~s~DG~av~TgSWDs~lr 340 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAGYDDFTCNVWDTLK-GERVGVLAGHENRV---------------SCLGVSPDGMAVATGSWDSTLR 340 (343)
T ss_pred eeEEEcccccEEEeeecCCceeEeeccc-cceEEEeeccCCee---------------EEEEECCCCcEEEecchhHhee
Confidence 999999999999997 459999999987 88999999998764 4999999999999999999999
Q ss_pred EEe
Q 010256 424 VFG 426 (514)
Q Consensus 424 iwd 426 (514)
||.
T Consensus 341 iW~ 343 (343)
T KOG0286|consen 341 IWA 343 (343)
T ss_pred ecC
Confidence 994
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-37 Score=279.72 Aligned_cols=400 Identities=16% Similarity=0.218 Sum_probs=293.1
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCc-cccccccc-ccccCCccceeeeeeccCCCccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQ-RRDLEMMD-YSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (514)
..+|.+.|-+.-|..+...|.|-+.||.+.+|........... +..-++.. ....-..+. +.|...|.-.+.
T Consensus 185 l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Ee------k~~~~~~~k~~k 258 (893)
T KOG0291|consen 185 LNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEE------KTHKIFWYKTKK 258 (893)
T ss_pred ccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchh------hhcceEEEEEEe
Confidence 4589999999999999999999999999999998733211000 00000000 000000000 001000000000
Q ss_pred cc---cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCc
Q 010256 109 LE---IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (514)
Q Consensus 109 ~~---~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 185 (514)
.- -...|++.+|++.. ..|+++-..|...+|.+....++....... ..|. .+.|+..|..
T Consensus 259 ~~ln~~~~kvtaa~fH~~t--~~lvvgFssG~f~LyelP~f~lih~LSis~--------~~I~-------t~~~N~tGDW 321 (893)
T KOG0291|consen 259 HYLNQNSSKVTAAAFHKGT--NLLVVGFSSGEFGLYELPDFNLIHSLSISD--------QKIL-------TVSFNSTGDW 321 (893)
T ss_pred eeecccccceeeeeccCCc--eEEEEEecCCeeEEEecCCceEEEEeeccc--------ceee-------EEEecccCCE
Confidence 00 11679999996544 489999999999999999988777665542 2222 6778888888
Q ss_pred cccccCCCCCCcccCCCC-CCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccC
Q 010256 186 GERNFGCASNDSSFPPGG-VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI 263 (514)
Q Consensus 186 l~~~~~~~~~~~~~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~ 263 (514)
+ +.|+. -|.+.+|+ |..+.-.. . ..+|...+.+++++|||+++++| +||.|++||...
T Consensus 322 i------------A~g~~klgQLlVwe--WqsEsYVl-----K-QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S 381 (893)
T KOG0291|consen 322 I------------AFGCSKLGQLLVWE--WQSESYVL-----K-QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS 381 (893)
T ss_pred E------------EEcCCccceEEEEE--eeccceee-----e-ccccccceeeEEECCCCcEEEeccCCCcEEEEeccC
Confidence 7 66554 48999998 44443111 1 27899999999999999999999 999999999985
Q ss_pred CCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccc
Q 010256 264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 343 (514)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (514)
+-... ++..|...|+.+.|+..+ +.+++.+.||+|+.||+..... .++|..++. -.
T Consensus 382 gfC~v--------TFteHts~Vt~v~f~~~g-~~llssSLDGtVRAwDlkRYrN----fRTft~P~p-----------~Q 437 (893)
T KOG0291|consen 382 GFCFV--------TFTEHTSGVTAVQFTARG-NVLLSSSLDGTVRAWDLKRYRN----FRTFTSPEP-----------IQ 437 (893)
T ss_pred ceEEE--------EeccCCCceEEEEEEecC-CEEEEeecCCeEEeeeecccce----eeeecCCCc-----------ee
Confidence 43332 688899999999999999 9999999999999999987654 556655432 35
Q ss_pred eeEEEEecCCCEEEEEe-C-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCc
Q 010256 344 ISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 421 (514)
Q Consensus 344 i~~~~~s~~g~~l~~~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 421 (514)
..+++..|.|.++.+|+ | -.|.+|++++ ++.+..+.+|++++. +++|+|++..|+++|.|.+
T Consensus 438 fscvavD~sGelV~AG~~d~F~IfvWS~qT-GqllDiLsGHEgPVs---------------~l~f~~~~~~LaS~SWDkT 501 (893)
T KOG0291|consen 438 FSCVAVDPSGELVCAGAQDSFEIFVWSVQT-GQLLDILSGHEGPVS---------------GLSFSPDGSLLASGSWDKT 501 (893)
T ss_pred eeEEEEcCCCCEEEeeccceEEEEEEEeec-CeeeehhcCCCCcce---------------eeEEccccCeEEeccccce
Confidence 67889999999999985 4 7899999999 999999999998854 8999999999999999999
Q ss_pred EEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEe-----------------eCCCCCccccCCcccc
Q 010256 422 FRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRV-----------------KGADNSALDANGNAFD 484 (514)
Q Consensus 422 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~-----------------~~~~~~~~~~~~~~~~ 484 (514)
|++||+-.......++ .+...+..+.|+|+|+-|+++..||.+.+. .+.+...+.+....-.
T Consensus 502 VRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa 580 (893)
T KOG0291|consen 502 VRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSA 580 (893)
T ss_pred EEEEEeeccCceeeeE-eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcc
Confidence 9999997653332333 456678899999999999999999999981 1222222223333334
Q ss_pred cccceEEEEEcCCCCEEEEEe-cCcEEEEeC
Q 010256 485 FSMKLLHLAWHPSENSIACAA-SNSLYMYYA 514 (514)
Q Consensus 485 ~~~~v~~~~~spd~~~l~~~~-~~~~~i~~~ 514 (514)
..+..+.+.+|+||+.|++|+ .+.++||.+
T Consensus 581 ~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v 611 (893)
T KOG0291|consen 581 KGKTFTTICYSADGKCILAGGESNSICIYDV 611 (893)
T ss_pred cCCceEEEEEcCCCCEEEecCCcccEEEEEC
Confidence 457899999999999988777 888999864
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=246.48 Aligned_cols=267 Identities=15% Similarity=0.223 Sum_probs=217.5
Q ss_pred cEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCc
Q 010256 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS 206 (514)
Q Consensus 127 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 206 (514)
-+|++++.|.+||+|...+|.+...+.... +.|. .+...|+++.| + ......
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~d--------sqVN-------rLeiTpdk~~L------------A-aa~~qh 62 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPD--------SQVN-------RLEITPDKKDL------------A-AAGNQH 62 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCc--------ccee-------eEEEcCCcchh------------h-hccCCe
Confidence 478999999999999999999988877762 3333 78899999985 4 445679
Q ss_pred EEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCce
Q 010256 207 LRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVI 285 (514)
Q Consensus 207 i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 285 (514)
||+|| +.+... .+...| .+|+..|.++.|..+|+++++| +||+++|||++..... ....+..+|
T Consensus 63 vRlyD-~~S~np----~Pv~t~-e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~q---------R~~~~~spV 127 (311)
T KOG0315|consen 63 VRLYD-LNSNNP----NPVATF-EGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQ---------RNYQHNSPV 127 (311)
T ss_pred eEEEE-ccCCCC----CceeEE-eccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccc---------hhccCCCCc
Confidence 99999 433322 144454 8999999999999999999999 9999999999963322 334477999
Q ss_pred EEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeE
Q 010256 286 TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTL 364 (514)
Q Consensus 286 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i 364 (514)
+++..+|+. ..|++|..+|.|++||+........ + ..+-..+|.++...|||.+++++.+ |+.
T Consensus 128 n~vvlhpnQ-teLis~dqsg~irvWDl~~~~c~~~----l-----------iPe~~~~i~sl~v~~dgsml~a~nnkG~c 191 (311)
T KOG0315|consen 128 NTVVLHPNQ-TELISGDQSGNIRVWDLGENSCTHE----L-----------IPEDDTSIQSLTVMPDGSMLAAANNKGNC 191 (311)
T ss_pred ceEEecCCc-ceEEeecCCCcEEEEEccCCccccc----c-----------CCCCCcceeeEEEcCCCcEEEEecCCccE
Confidence 999999998 7899999999999999988654211 1 1112257999999999999999877 999
Q ss_pred EEEEccC-----CCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecC
Q 010256 365 KLWDINM-----DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA 439 (514)
Q Consensus 365 ~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 439 (514)
++|++-. +-+++..++.|... ++.+.+|||+++||+++.|.+++||+.+..-+....+++
T Consensus 192 yvW~l~~~~~~s~l~P~~k~~ah~~~---------------il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~g 256 (311)
T KOG0315|consen 192 YVWRLLNHQTASELEPVHKFQAHNGH---------------ILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTG 256 (311)
T ss_pred EEEEccCCCccccceEhhheecccce---------------EEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeec
Confidence 9999875 12345556666554 348999999999999999999999999876455588999
Q ss_pred CCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 440 SKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 440 ~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
|...++..+||.|++||++++.|+.+++
T Consensus 257 h~rWvWdc~FS~dg~YlvTassd~~~rl 284 (311)
T KOG0315|consen 257 HQRWVWDCAFSADGEYLVTASSDHTARL 284 (311)
T ss_pred CCceEEeeeeccCccEEEecCCCCceee
Confidence 9999999999999999999999999999
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-38 Score=269.75 Aligned_cols=283 Identities=19% Similarity=0.353 Sum_probs=236.3
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
.......|++++|+.+|..||+|+.||.++||+..... ..++..|.
T Consensus 231 s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l------------------------~~tl~~Hk---------- 276 (524)
T KOG0273|consen 231 SVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL------------------------ISTLGQHK---------- 276 (524)
T ss_pred cCCccCCcceEEecCCCCeEEEeecCcEEEEEecCchh------------------------hhhhhccC----------
Confidence 45556789999999999999999999999999975443 35678888
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
++|.++.| +..|.+|++++.|+++.+||..++...+.+.++..+. ..+.|-.+...
T Consensus 277 --gPI~slKW--nk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~---------------lDVdW~~~~~F----- 332 (524)
T KOG0273|consen 277 --GPIFSLKW--NKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPA---------------LDVDWQSNDEF----- 332 (524)
T ss_pred --CceEEEEE--cCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCc---------------cceEEecCceE-----
Confidence 99999999 6788999999999999999999999888888774331 03445544443
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
++.+.|+.|+++. +.. ..+..++ .+|.++|.++.|+|.+.+|+++ +|++++||.+.......
T Consensus 333 --------~ts~td~~i~V~k-v~~------~~P~~t~-~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~- 395 (524)
T KOG0273|consen 333 --------ATSSTDGCIHVCK-VGE------DRPVKTF-IGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVH- 395 (524)
T ss_pred --------eecCCCceEEEEE-ecC------CCcceee-ecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchh-
Confidence 8899999999988 322 2344454 6799999999999999999999 99999999987544332
Q ss_pred eeccCCCcccccCCceEEEEEecCCC--------cEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccc
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHC--------NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 341 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~--------~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (514)
.+..|...|..+.|+|+|+ ..+++++.|++|++||+..+..+ ..|..|.
T Consensus 396 -------~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i----------------~~f~kH~ 452 (524)
T KOG0273|consen 396 -------DLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPI----------------HTLMKHQ 452 (524)
T ss_pred -------hhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCcee----------------EeeccCC
Confidence 5788999999999999764 47999999999999999998763 2256677
Q ss_pred cceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCC
Q 010256 342 ASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 420 (514)
Q Consensus 342 ~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 420 (514)
.+|++++|+|+|+++++|+- |.|.+|+.++ ++.++.+.+... |+.++|+.+|.+|..+-.|+
T Consensus 453 ~pVysvafS~~g~ylAsGs~dg~V~iws~~~-~~l~~s~~~~~~----------------Ifel~Wn~~G~kl~~~~sd~ 515 (524)
T KOG0273|consen 453 EPVYSVAFSPNGRYLASGSLDGCVHIWSTKT-GKLVKSYQGTGG----------------IFELCWNAAGDKLGACASDG 515 (524)
T ss_pred CceEEEEecCCCcEEEecCCCCeeEeccccc-hheeEeecCCCe----------------EEEEEEcCCCCEEEEEecCC
Confidence 89999999999999999975 9999999998 888888876543 45899999999999999999
Q ss_pred cEEEEecC
Q 010256 421 LFRVFGCS 428 (514)
Q Consensus 421 ~i~iwd~~ 428 (514)
.+.+-|+.
T Consensus 516 ~vcvldlr 523 (524)
T KOG0273|consen 516 SVCVLDLR 523 (524)
T ss_pred CceEEEec
Confidence 99998875
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=265.10 Aligned_cols=333 Identities=17% Similarity=0.289 Sum_probs=255.2
Q ss_pred cccccceEEEEEcCCCC-eEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 32 VQEVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~-~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..|..+|.+.+|+|-.. .|++|+.|-..++|++......+.....|. ......+ ++.+
T Consensus 175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lr-------------h~~~~~~--------~s~~ 233 (524)
T KOG0273|consen 175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLR-------------HCIREGG--------KSVP 233 (524)
T ss_pred ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhh-------------hhhhhhc--------ccCC
Confidence 35999999999999665 999999999999999864221100000000 0000111 1222
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
-...|++++| +.+|..|++|+.||.+++|+......
T Consensus 234 ~nkdVT~L~W--n~~G~~LatG~~~G~~riw~~~G~l~------------------------------------------ 269 (524)
T KOG0273|consen 234 SNKDVTSLDW--NNDGTLLATGSEDGEARIWNKDGNLI------------------------------------------ 269 (524)
T ss_pred ccCCcceEEe--cCCCCeEEEeecCcEEEEEecCchhh------------------------------------------
Confidence 2367999999 67889999999999999999765421
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
.. +..|+++|.++.|+.+|.+|+++ .|+++.+||..++....
T Consensus 270 -----------------------------------~t-l~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q- 312 (524)
T KOG0273|consen 270 -----------------------------------ST-LGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQ- 312 (524)
T ss_pred -----------------------------------hh-hhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEE-
Confidence 01 36799999999999999999999 89999999997655433
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
.++-|..+...+.|-.+ ..|++++.|+.|+++.+..... ...+.+|.+.|.++.|
T Consensus 313 -------~f~~~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~P----------------~~t~~GH~g~V~alk~ 367 (524)
T KOG0273|consen 313 -------QFEFHSAPALDVDWQSN--DEFATSSTDGCIHVCKVGEDRP----------------VKTFIGHHGEVNALKW 367 (524)
T ss_pred -------eeeeccCCccceEEecC--ceEeecCCCceEEEEEecCCCc----------------ceeeecccCceEEEEE
Confidence 34556776678999876 4799999999999999866443 2346677899999999
Q ss_pred ecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCC---------CEEEEEeCC
Q 010256 350 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG---------GRVATGSYS 419 (514)
Q Consensus 350 s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---------~~l~s~~~d 419 (514)
.|.|.+|++++| ++++||+... ......+..|... |+.+.|+|+| ..|++++.|
T Consensus 368 n~tg~LLaS~SdD~TlkiWs~~~-~~~~~~l~~Hske---------------i~t~~wsp~g~v~~n~~~~~~l~sas~d 431 (524)
T KOG0273|consen 368 NPTGSLLASCSDDGTLKIWSMGQ-SNSVHDLQAHSKE---------------IYTIKWSPTGPVTSNPNMNLMLASASFD 431 (524)
T ss_pred CCCCceEEEecCCCeeEeeecCC-Ccchhhhhhhccc---------------eeeEeecCCCCccCCCcCCceEEEeecC
Confidence 999999999876 9999999986 7888888888754 3378888865 378999999
Q ss_pred CcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCC
Q 010256 420 NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN 499 (514)
Q Consensus 420 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~ 499 (514)
+.|++||+..+.++ .++..|+.+|++++|+|+++++|+|+.||.|.+ |......+. ..+.-.+.|..+.|+.+|+
T Consensus 432 stV~lwdv~~gv~i-~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~i---ws~~~~~l~-~s~~~~~~Ifel~Wn~~G~ 506 (524)
T KOG0273|consen 432 STVKLWDVESGVPI-HTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHI---WSTKTGKLV-KSYQGTGGIFELCWNAAGD 506 (524)
T ss_pred CeEEEEEccCCcee-EeeccCCCceEEEEecCCCcEEEecCCCCeeEe---ccccchhee-EeecCCCeEEEEEEcCCCC
Confidence 99999999998554 889999999999999999999999999999999 222211111 1122366799999999998
Q ss_pred EEE-EEecCcEEEE
Q 010256 500 SIA-CAASNSLYMY 512 (514)
Q Consensus 500 ~l~-~~~~~~~~i~ 512 (514)
.|. +.+++.+++.
T Consensus 507 kl~~~~sd~~vcvl 520 (524)
T KOG0273|consen 507 KLGACASDGSVCVL 520 (524)
T ss_pred EEEEEecCCCceEE
Confidence 887 4456666553
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=240.96 Aligned_cols=296 Identities=14% Similarity=0.235 Sum_probs=232.6
Q ss_pred CeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEEEeeCCCCc
Q 010256 48 DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSA 127 (514)
Q Consensus 48 ~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 127 (514)
-+|++++.|.+||+|...+|. ...+++..+ ..|+.+.. .++++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~-----------------------C~rTiqh~d------------sqVNrLei--Tpdk~ 53 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGI-----------------------CSRTIQHPD------------SQVNRLEI--TPDKK 53 (311)
T ss_pred eEEEeccCcceeeeeehhcCe-----------------------EEEEEecCc------------cceeeEEE--cCCcc
Confidence 489999999999999999887 445565554 77999999 66776
Q ss_pred EEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcE
Q 010256 128 LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSL 207 (514)
Q Consensus 128 ~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 207 (514)
.|++++. ..||+||+.+++...+..+..+. ..|. .+.|..+|+.+ ++|++||++
T Consensus 54 ~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~------kNVt-------aVgF~~dgrWM------------yTgseDgt~ 107 (311)
T KOG0315|consen 54 DLAAAGN-QHVRLYDLNSNNPNPVATFEGHT------KNVT-------AVGFQCDGRWM------------YTGSEDGTV 107 (311)
T ss_pred hhhhccC-CeeEEEEccCCCCCceeEEeccC------CceE-------EEEEeecCeEE------------EecCCCceE
Confidence 7776664 78999999988765554444332 2333 78999999999 999999999
Q ss_pred EeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceE
Q 010256 208 RLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT 286 (514)
Q Consensus 208 ~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 286 (514)
+||| +.. ..+.+. ..|..+|+++..+|+..-|++| .+|.|++||+.+......+ .......|.
T Consensus 108 kIWd-lR~------~~~qR~--~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l-------iPe~~~~i~ 171 (311)
T KOG0315|consen 108 KIWD-LRS------LSCQRN--YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL-------IPEDDTSIQ 171 (311)
T ss_pred EEEe-ccC------cccchh--ccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc-------CCCCCccee
Confidence 9999 444 233344 4677999999999999999999 8999999999855433322 233457899
Q ss_pred EEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEE
Q 010256 287 SAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLK 365 (514)
Q Consensus 287 ~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~ 365 (514)
++...|+| .+++.+...|...+|++-+.... ..++ +...++.|.+.+..+.+|||+++|++++ |.+++
T Consensus 172 sl~v~~dg-sml~a~nnkG~cyvW~l~~~~~~----s~l~------P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~ 240 (311)
T KOG0315|consen 172 SLTVMPDG-SMLAAANNKGNCYVWRLLNHQTA----SELE------PVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVK 240 (311)
T ss_pred eEEEcCCC-cEEEEecCCccEEEEEccCCCcc----ccce------EhhheecccceEEEEEECCCCcEEEeecCCceEE
Confidence 99999999 89999999999999999774431 1121 1223778889999999999999999965 69999
Q ss_pred EEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCccee
Q 010256 366 LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMR 445 (514)
Q Consensus 366 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 445 (514)
||+.+.--+....+++|+.. ++.++||.||+||++|+.|+.+++|++..++. .....+|..+..
T Consensus 241 iwn~~~~~kle~~l~gh~rW---------------vWdc~FS~dg~YlvTassd~~~rlW~~~~~k~-v~qy~gh~K~~v 304 (311)
T KOG0315|consen 241 IWNTDDFFKLELVLTGHQRW---------------VWDCAFSADGEYLVTASSDHTARLWDLSAGKE-VRQYQGHHKAAV 304 (311)
T ss_pred EEecCCceeeEEEeecCCce---------------EEeeeeccCccEEEecCCCCceeecccccCce-eeecCCcccccE
Confidence 99998733666777888765 56999999999999999999999999998854 467777776655
Q ss_pred EEEE
Q 010256 446 RQVQ 449 (514)
Q Consensus 446 ~~~~ 449 (514)
+++.
T Consensus 305 c~~l 308 (311)
T KOG0315|consen 305 CVAL 308 (311)
T ss_pred EEEe
Confidence 5554
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=256.80 Aligned_cols=285 Identities=15% Similarity=0.253 Sum_probs=240.8
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.++|.|+++.|..++|++|+.|++|+|||+.+++ +..++.||-
T Consensus 147 i~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~-----------------------LkltltGhi---------- 193 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ-----------------------LKLTLTGHI---------- 193 (460)
T ss_pred hhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe-----------------------EEEeecchh----------
Confidence 34899999999999999999999999999999999888 557889998
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
+.|..+++++... |+++++.|+.|+.||++.++.+
T Consensus 194 --~~vr~vavS~rHp--YlFs~gedk~VKCwDLe~nkvI----------------------------------------- 228 (460)
T KOG0285|consen 194 --ETVRGVAVSKRHP--YLFSAGEDKQVKCWDLEYNKVI----------------------------------------- 228 (460)
T ss_pred --heeeeeeecccCc--eEEEecCCCeeEEEechhhhhH-----------------------------------------
Confidence 8899999965544 9999999999999999876521
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
+.| .+|-..|.+++.+|.-..|++| .|.++++||+++.....
T Consensus 229 -----------------------------------R~Y-hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~- 271 (460)
T KOG0285|consen 229 -----------------------------------RHY-HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVH- 271 (460)
T ss_pred -----------------------------------HHh-ccccceeEEEeccccceeEEecCCcceEEEeeecccceEE-
Confidence 122 6888999999999999999999 99999999999776654
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
.+.+|...|.++.+.|.. ..+++|+.|++|++||++.++.. ..+..|+..+++++.
T Consensus 272 -------~l~GH~~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~agkt~----------------~tlt~hkksvral~l 327 (460)
T KOG0285|consen 272 -------VLSGHTNPVASVMCQPTD-PQVITGSHDSTVRLWDLRAGKTM----------------ITLTHHKKSVRALCL 327 (460)
T ss_pred -------EecCCCCcceeEEeecCC-CceEEecCCceEEEeeeccCcee----------------EeeecccceeeEEec
Confidence 578999999999999988 68999999999999999998753 235667789999999
Q ss_pred ecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCC
Q 010256 350 ARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 350 s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 429 (514)
+|....+++++...|+-|++.. +..+..+.+|...+. +++.+.|| ++++|++.|.+.+||.++
T Consensus 328 hP~e~~fASas~dnik~w~~p~-g~f~~nlsgh~~iin---------------tl~~nsD~-v~~~G~dng~~~fwdwks 390 (460)
T KOG0285|consen 328 HPKENLFASASPDNIKQWKLPE-GEFLQNLSGHNAIIN---------------TLSVNSDG-VLVSGGDNGSIMFWDWKS 390 (460)
T ss_pred CCchhhhhccCCccceeccCCc-cchhhccccccceee---------------eeeeccCc-eEEEcCCceEEEEEecCc
Confidence 9999999998878999999997 888888888887643 78877665 677899999999999998
Q ss_pred Cceee--eee--cC---CCcceeEEEECCCCCceeecCCCCeEEEeeCC
Q 010256 430 GSAES--TTL--EA---SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGA 471 (514)
Q Consensus 430 ~~~~~--~~~--~~---~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~ 471 (514)
+.... ++. .+ ....|.+.+|...+..|++|..|.+|++++..
T Consensus 391 g~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 391 GHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred CcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 74432 111 12 23457889999999999999999999994433
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=247.51 Aligned_cols=286 Identities=19% Similarity=0.283 Sum_probs=233.2
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|..+.|+|+|.+||+|+.|..|.+|++..... -...+++|.
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce----------------------N~~~lkgHs---------- 90 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE----------------------NFWVLKGHS---------- 90 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc----------------------ceeeecccc----------
Confidence 348999999999999999999999999999999765443 334577998
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
+.|..+.| ..++..+++++.|++++.||+++|+....
T Consensus 91 --gAVM~l~~--~~d~s~i~S~gtDk~v~~wD~~tG~~~rk--------------------------------------- 127 (338)
T KOG0265|consen 91 --GAVMELHG--MRDGSHILSCGTDKTVRGWDAETGKRIRK--------------------------------------- 127 (338)
T ss_pred --ceeEeeee--ccCCCEEEEecCCceEEEEecccceeeeh---------------------------------------
Confidence 99999999 67888999999999999999999874332
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEE-Ee-cCCeEEEEeccCCCcee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI-SA-DDLRINLWNLEISNQSF 268 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~-~d~~i~iwd~~~~~~~~ 268 (514)
..+|..-|+++.-+.-|..|+ ++ +|+++++||+++....
T Consensus 128 --------------------------------------~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~- 168 (338)
T KOG0265|consen 128 --------------------------------------HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI- 168 (338)
T ss_pred --------------------------------------hccccceeeecCccccCCeEEEecCCCceEEEEeecccchh-
Confidence 156667777777555555555 56 8999999999954433
Q ss_pred eeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEE
Q 010256 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (514)
Q Consensus 269 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (514)
+ ......+++++.|..++ ..+.+|+-|+.|++||++.+.. .+ ++.||..+|+.+.
T Consensus 169 ~--------t~~~kyqltAv~f~d~s-~qv~sggIdn~ikvWd~r~~d~----~~------------~lsGh~DtIt~ls 223 (338)
T KOG0265|consen 169 K--------TFENKYQLTAVGFKDTS-DQVISGGIDNDIKVWDLRKNDG----LY------------TLSGHADTITGLS 223 (338)
T ss_pred h--------ccccceeEEEEEecccc-cceeeccccCceeeeccccCcc----eE------------EeecccCceeeEE
Confidence 2 22246789999999988 7899999999999999998775 23 3566778999999
Q ss_pred EecCCCEEEEEe-CCeEEEEEccC---CCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEE
Q 010256 349 FARNGRHILSRD-YMTLKLWDINM---DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 424 (514)
Q Consensus 349 ~s~~g~~l~~~~-~~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 424 (514)
.+|+|.++.+-+ |.++++||++. ..+++..+.+|..... .. ...++|+|+++.+.+|+.|..+++
T Consensus 224 ls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfe--------kn---lL~cswsp~~~~i~ags~dr~vyv 292 (338)
T KOG0265|consen 224 LSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFE--------KN---LLKCSWSPNGTKITAGSADRFVYV 292 (338)
T ss_pred eccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhh--------hh---cceeeccCCCCccccccccceEEE
Confidence 999999999965 69999999984 1334667776654311 00 237899999999999999999999
Q ss_pred EecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 425 FGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 425 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
||..+. ..+..+.+|...|..+.|+|...+|.+++.|+++.+
T Consensus 293 wd~~~r-~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 293 WDTTSR-RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred eecccc-cEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 999865 455899999999999999999999999999999998
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=254.80 Aligned_cols=282 Identities=16% Similarity=0.230 Sum_probs=247.0
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|...|+.+-|+|+-..+++++.|++|++||..+++ +...++||.
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~-----------------------~e~~LrGHt---------- 150 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGE-----------------------LERSLRGHT---------- 150 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchh-----------------------hhhhhhccc----------
Confidence 35799999999999999999999999999999999887 447789999
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
+.|.+|.| ...|+++++++.|-.+++||..+..
T Consensus 151 --~sv~di~~--~a~Gk~l~tcSsDl~~~LWd~~~~~------------------------------------------- 183 (406)
T KOG0295|consen 151 --DSVFDISF--DASGKYLATCSSDLSAKLWDFDTFF------------------------------------------- 183 (406)
T ss_pred --cceeEEEE--ecCccEEEecCCccchhheeHHHHH-------------------------------------------
Confidence 88999999 5678899999999999999987531
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
++.+. +.+|...|.+++|-|.|.+++++ .|.+|+.|++.++....
T Consensus 184 --------------------------------~c~ks-~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~- 229 (406)
T KOG0295|consen 184 --------------------------------RCIKS-LIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVK- 229 (406)
T ss_pred --------------------------------HHHHH-hcCcccceeeEEEEecCCeeeecccccceeEEecccceeEE-
Confidence 12222 37888999999999999999999 99999999999776543
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
++.+|...|..++.+.|| .++++++.|.++++|-+.++++. ..+.+|..+|.+++|
T Consensus 230 -------t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k----------------~~lR~hEh~vEci~w 285 (406)
T KOG0295|consen 230 -------TFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCK----------------AELREHEHPVECIAW 285 (406)
T ss_pred -------eccCchHhEEEEEecCCe-eEEEecCCCceEEEEEeccchhh----------------hhhhccccceEEEEe
Confidence 678899999999999999 99999999999999999887542 225556678999998
Q ss_pred ecC---------------CCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEE
Q 010256 350 ARN---------------GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 413 (514)
Q Consensus 350 s~~---------------g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 413 (514)
-|. ++++.+++ |++|++||+.+ +.++.++.+|...+. .++|+|.|+||
T Consensus 286 ap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t-g~cL~tL~ghdnwVr---------------~~af~p~Gkyi 349 (406)
T KOG0295|consen 286 APESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST-GMCLFTLVGHDNWVR---------------GVAFSPGGKYI 349 (406)
T ss_pred cccccCcchhhccCCCCCccEEEeecccceEEEEeccC-CeEEEEEecccceee---------------eeEEcCCCeEE
Confidence 762 36888886 49999999998 999999999998854 89999999999
Q ss_pred EEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 414 ATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 414 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+++.+|+++++||++++++. .+++.|..-+..+.|..+..++++|+-|.++++
T Consensus 350 ~ScaDDktlrvwdl~~~~cm-k~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~Kv 402 (406)
T KOG0295|consen 350 LSCADDKTLRVWDLKNLQCM-KTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 402 (406)
T ss_pred EEEecCCcEEEEEeccceee-eccCCCcceeEEEecCCCCceEEeccccceeee
Confidence 99999999999999998665 788899999999999999999999999999988
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=273.83 Aligned_cols=381 Identities=15% Similarity=0.170 Sum_probs=291.7
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeecc-CCCcccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQS-HEPEFDYLKSL 109 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~ 109 (514)
..+..+.|++++.+||+++|++++..+.+++|++.+++. .+.++. |+
T Consensus 58 ~~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~-----------------------irswKa~He--------- 105 (775)
T KOG0319|consen 58 SNEDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKL-----------------------IRSWKAIHE--------- 105 (775)
T ss_pred CccchhhhheeeecCCccEEEEeeccceEEEEEcccchH-----------------------hHhHhhccC---------
Confidence 345678999999999999999999999999999988863 456666 77
Q ss_pred ccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
.+|.-++|. +.+.++++|+.|+.+++||+..+.+...+..+ .|.|. ++.|.|+-...
T Consensus 106 ---~Pvi~ma~~--~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~--------gGvVs-------sl~F~~~~~~~--- 162 (775)
T KOG0319|consen 106 ---APVITMAFD--PTGTLLATGGADGRVKVWDIKNGYCTHSFKGH--------GGVVS-------SLLFHPHWNRW--- 162 (775)
T ss_pred ---CCeEEEEEc--CCCceEEeccccceEEEEEeeCCEEEEEecCC--------CceEE-------EEEeCCccchh---
Confidence 899999995 55679999999999999999999988877765 34454 77777776542
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCce-
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS- 267 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~- 267 (514)
++++|..|+.+++|| +..... |... ...|.+.|++++|.+|+..++++ .|..+.+||+...+..
T Consensus 163 -------lL~sg~~D~~v~vwn-l~~~~t-----cl~~-~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~ 228 (775)
T KOG0319|consen 163 -------LLASGATDGTVRVWN-LNDKRT-----CLHT-MILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLK 228 (775)
T ss_pred -------heeecCCCceEEEEE-cccCch-----HHHH-HHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhh
Confidence 349999999999999 332221 3333 37899999999999998888887 8999999987532000
Q ss_pred --------------------------------------------------------------------------------
Q 010256 268 -------------------------------------------------------------------------------- 267 (514)
Q Consensus 268 -------------------------------------------------------------------------------- 267 (514)
T Consensus 229 ~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~ 308 (775)
T KOG0319|consen 229 TLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLY 308 (775)
T ss_pred eechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEE
Confidence
Q ss_pred ---------------------------------------eeeecc---CCCcccccCCceEEEEEecCCCcEEEEEecCC
Q 010256 268 ---------------------------------------FNIVDV---KPANMEDLTEVITSAEFHPTHCNMLAYSSSKG 305 (514)
Q Consensus 268 ---------------------------------------~~~~~~---~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg 305 (514)
+++.+. ...-+.+|...|.+++...+| .+|++|+.|.
T Consensus 309 d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g-~llat~sKD~ 387 (775)
T KOG0319|consen 309 DEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG-DLLATGSKDK 387 (775)
T ss_pred EccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC-cEEEEecCCc
Confidence 000000 012246788888888855666 7999999999
Q ss_pred eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCC-CEEEEEe-CCeEEEEEccCCCCce---e---
Q 010256 306 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-RHILSRD-YMTLKLWDINMDSGPV---A--- 377 (514)
Q Consensus 306 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~~-~~~i~iwd~~~~~~~~---~--- 377 (514)
++++|.++++...... .....+|.+.|.+++++..+ .++++++ |+++++|++.. .++. .
T Consensus 388 svilWr~~~~~~~~~~------------~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~-s~~~~~~~~~~ 454 (775)
T KOG0319|consen 388 SVILWRLNNNCSKSLC------------VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPK-SKETAFPIVLT 454 (775)
T ss_pred eEEEEEecCCcchhhh------------hhhhcccccccceeeecccCccEEEEecCCceEEEecCCC-cccccccceeh
Confidence 9999999554322111 12246788999999998755 4667764 69999999975 2211 1
Q ss_pred ---eeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCC
Q 010256 378 ---TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP 454 (514)
Q Consensus 378 ---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 454 (514)
+...|.. +|.+++++|+.+++||||.|.+.+||+++.. .+..++.+|+..++++.|+|..+
T Consensus 455 ~~~t~~aHdK---------------dIN~Vaia~ndkLiAT~SqDktaKiW~le~~-~l~~vLsGH~RGvw~V~Fs~~dq 518 (775)
T KOG0319|consen 455 CRYTERAHDK---------------DINCVAIAPNDKLIATGSQDKTAKIWDLEQL-RLLGVLSGHTRGVWCVSFSKNDQ 518 (775)
T ss_pred hhHHHHhhcc---------------cccceEecCCCceEEecccccceeeecccCc-eEEEEeeCCccceEEEEeccccc
Confidence 1112222 2449999999999999999999999999955 56699999999999999999999
Q ss_pred ceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 455 SRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 455 ~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
.+|++|.|++|+| |.+..........+|...|..++|-.+++.|++++ ++-+.+|+
T Consensus 519 ~laT~SgD~TvKI---W~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWn 575 (775)
T KOG0319|consen 519 LLATCSGDKTVKI---WSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWN 575 (775)
T ss_pred eeEeccCCceEEE---EEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEe
Confidence 9999999999999 55554445556667999999999999999988655 66677886
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-38 Score=265.49 Aligned_cols=278 Identities=19% Similarity=0.312 Sum_probs=237.5
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccc
Q 010256 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (514)
.-.|..|.|.|+|+.|++|+..|...+|+..+ +.+...++.|+ ..
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~-----------------------fnFEtilQaHD------------s~ 140 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS-----------------------FNFETILQAHD------------SP 140 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCce-----------------------eeHHHHhhhhc------------cc
Confidence 45899999999999999999999999999632 22445578898 99
Q ss_pred eeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCC
Q 010256 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (514)
Q Consensus 115 v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (514)
|.++.| +.+|.++++|..+|.|++|+......+
T Consensus 141 Vr~m~w--s~~g~wmiSgD~gG~iKyWqpnmnnVk--------------------------------------------- 173 (464)
T KOG0284|consen 141 VRTMKW--SHNGTWMISGDKGGMIKYWQPNMNNVK--------------------------------------------- 173 (464)
T ss_pred ceeEEE--ccCCCEEEEcCCCceEEecccchhhhH---------------------------------------------
Confidence 999999 567889999999999999987643210
Q ss_pred CCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeecc
Q 010256 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 273 (514)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~ 273 (514)
.+...|...|++++|+|....|+++ +||+|+|||....++..
T Consensus 174 --------------------------------~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~----- 216 (464)
T KOG0284|consen 174 --------------------------------IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEER----- 216 (464)
T ss_pred --------------------------------HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhh-----
Confidence 1113455889999999999999999 99999999998766543
Q ss_pred CCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCC
Q 010256 274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (514)
Q Consensus 274 ~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 353 (514)
.+.+|.-.|.+++|+|.. .++++|+.|..|++||.+++.++ . .+.+|+..|..+.|+|++
T Consensus 217 ---vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~cl----~------------tlh~HKntVl~~~f~~n~ 276 (464)
T KOG0284|consen 217 ---VLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGSCL----A------------TLHGHKNTVLAVKFNPNG 276 (464)
T ss_pred ---eeccCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcchh----h------------hhhhccceEEEEEEcCCC
Confidence 468899999999999998 79999999999999999999874 2 255677899999999999
Q ss_pred CEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCC-CCEEEEEeCCCcEEEEecCCCc
Q 010256 354 RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD-GGRVATGSYSNLFRVFGCSEGS 431 (514)
Q Consensus 354 ~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~ 431 (514)
.+|++++. ..++++|+++ .+.+.++++|... ++++.|+|- ..+|.+|+.||.|..|.+...+
T Consensus 277 N~Llt~skD~~~kv~DiR~-mkEl~~~r~Hkkd---------------v~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~ 340 (464)
T KOG0284|consen 277 NWLLTGSKDQSCKVFDIRT-MKELFTYRGHKKD---------------VTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE 340 (464)
T ss_pred CeeEEccCCceEEEEehhH-hHHHHHhhcchhh---------------heeeccccccccceeeccCCCceEEEeccccc
Confidence 99999864 9999999997 8889999999865 348999994 5678899999999999998555
Q ss_pred eeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 432 AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 432 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.+...-.+|...|++++++|-|.+|++|+.|.++++
T Consensus 341 p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rf 376 (464)
T KOG0284|consen 341 PLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRF 376 (464)
T ss_pred cccCCCcccccceeeeeccccceeEeecCCCcceee
Confidence 555666789999999999999999999999999999
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=250.96 Aligned_cols=332 Identities=13% Similarity=0.091 Sum_probs=260.5
Q ss_pred ccccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccc
Q 010256 29 GEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (514)
Q Consensus 29 ~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (514)
.....|++.|.+++.+|+.+++|||+.|..-.||+..++. ...++.+|+
T Consensus 58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge-----------------------~~~eltgHK-------- 106 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE-----------------------FAGELTGHK-------- 106 (399)
T ss_pred eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc-----------------------ceeEecCCC--------
Confidence 3456899999999999999999999999999999998887 446789998
Q ss_pred cccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccc
Q 010256 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (514)
Q Consensus 109 ~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (514)
+.|+++.| +.+|.+|++|..+|.|+||+..++.....+.... +.+. =+.|.|.+..+
T Consensus 107 ----DSVt~~~F--shdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~--------~die-------Wl~WHp~a~il-- 163 (399)
T KOG0296|consen 107 ----DSVTCCSF--SHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEV--------EDIE-------WLKWHPRAHIL-- 163 (399)
T ss_pred ----CceEEEEE--ccCceEEEecCCCccEEEEEcccCceEEEeeccc--------CceE-------EEEecccccEE--
Confidence 99999999 7889999999999999999999987666554221 1121 46789999988
Q ss_pred ccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCce
Q 010256 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (514)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 267 (514)
+.|+.||.+.+|. +.+. ...+. +.+|..++++-.|.|+|+.++++ .||+|++|++.+..+.
T Consensus 164 ----------lAG~~DGsvWmw~-ip~~------~~~kv-~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~ 225 (399)
T KOG0296|consen 164 ----------LAGSTDGSVWMWQ-IPSQ------ALCKV-MSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPL 225 (399)
T ss_pred ----------EeecCCCcEEEEE-CCCc------ceeeE-ecCCCCCcccccccCCCceEEEEecCceEEEEecCCCcee
Confidence 9999999999999 3221 11222 48999999999999999999999 9999999999988776
Q ss_pred eeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeE-
Q 010256 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD- 346 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~- 346 (514)
..+- -. ......++.++..+ ..++.|+.++.+++-+..+++.+. .+.+ ..+ ....++...+.+
T Consensus 226 ~~~~------~~-e~~~~~~~~~~~~~-~~~~~g~~e~~~~~~~~~sgKVv~----~~n~-~~~---~l~~~~e~~~esv 289 (399)
T KOG0296|consen 226 HKIT------QA-EGLELPCISLNLAG-STLTKGNSEGVACGVNNGSGKVVN----CNNG-TVP---ELKPSQEELDESV 289 (399)
T ss_pred EEec------cc-ccCcCCcccccccc-ceeEeccCCccEEEEccccceEEE----ecCC-CCc---cccccchhhhhhh
Confidence 6541 11 14456788888888 889999999999999888887632 1111 111 111223334444
Q ss_pred --EEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEE
Q 010256 347 --IKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 423 (514)
Q Consensus 347 --~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 423 (514)
+.++..-.+.|+|+ ||+|.|||+.. .++...+ .|+.. |+.+.|-+ ..+|++++.+|.|+
T Consensus 290 e~~~~ss~lpL~A~G~vdG~i~iyD~a~-~~~R~~c-~he~~---------------V~~l~w~~-t~~l~t~c~~g~v~ 351 (399)
T KOG0296|consen 290 ESIPSSSKLPLAACGSVDGTIAIYDLAA-STLRHIC-EHEDG---------------VTKLKWLN-TDYLLTACANGKVR 351 (399)
T ss_pred hhcccccccchhhcccccceEEEEeccc-chhheec-cCCCc---------------eEEEEEcC-cchheeeccCceEE
Confidence 44554556667776 59999999985 4433333 34432 45899988 78899999999999
Q ss_pred EEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 424 VFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 424 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.||.++| ++..++.+|..+|..++++|++++++++|.|++.++
T Consensus 352 ~wDaRtG-~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~V 394 (399)
T KOG0296|consen 352 QWDARTG-QLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALV 394 (399)
T ss_pred eeecccc-ceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEE
Confidence 9999998 555899999999999999999999999999999888
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=240.50 Aligned_cols=293 Identities=18% Similarity=0.238 Sum_probs=228.5
Q ss_pred eeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceeccc
Q 010256 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (514)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (514)
...++++|. +.|+.++..+. +...+++++.|.++.+|++.......
T Consensus 7 l~~tl~gh~------------d~Vt~la~~~~-~~~~l~sasrDk~ii~W~L~~dd~~~--------------------- 52 (315)
T KOG0279|consen 7 LRGTLEGHT------------DWVTALAIKIK-NSDILVSASRDKTIIVWKLTSDDIKY--------------------- 52 (315)
T ss_pred eeeeecCCC------------ceEEEEEeecC-CCceEEEcccceEEEEEEeccCcccc---------------------
Confidence 456789998 88999999765 45689999999999999987642100
Q ss_pred ccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe
Q 010256 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 251 (514)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 251 (514)
+.+.+. +.+|...|..+..++||++.+++
T Consensus 53 --------------------------------------------------G~~~r~-~~GHsH~v~dv~~s~dg~~alS~ 81 (315)
T KOG0279|consen 53 --------------------------------------------------GVPVRR-LTGHSHFVSDVVLSSDGNFALSA 81 (315)
T ss_pred --------------------------------------------------Cceeee-eeccceEecceEEccCCceEEec
Confidence 112222 37899999999999999999999
Q ss_pred -cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCC
Q 010256 252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (514)
Q Consensus 252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 330 (514)
.|+++++||+.+++... .+.+|...|.+++|+||. +.+++|+.|.+|++|++..... ++....
T Consensus 82 swD~~lrlWDl~~g~~t~--------~f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g~ck-----~t~~~~-- 145 (315)
T KOG0279|consen 82 SWDGTLRLWDLATGESTR--------RFVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVCK-----YTIHED-- 145 (315)
T ss_pred cccceEEEEEecCCcEEE--------EEEecCCceEEEEecCCC-ceeecCCCcceeeeeeecccEE-----EEEecC--
Confidence 99999999999775443 578899999999999999 8999999999999999876432 111111
Q ss_pred CCccceeeccccceeEEEEecC--CCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEc
Q 010256 331 PGTRSFFTEIIASISDIKFARN--GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 407 (514)
Q Consensus 331 ~~~~~~~~~~~~~i~~~~~s~~--g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 407 (514)
.+.+.|.++.|+|+ ..+|++++ |++|++||+++ .+....+.+|.+.+ +.+++|
T Consensus 146 --------~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~-~~l~~~~~gh~~~v---------------~t~~vS 201 (315)
T KOG0279|consen 146 --------SHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN-CQLRTTFIGHSGYV---------------NTVTVS 201 (315)
T ss_pred --------CCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC-cchhhccccccccE---------------EEEEEC
Confidence 12478999999998 67788765 59999999997 88888898988764 389999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE--eeCCCCCccccCCccccc
Q 010256 408 GDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR--VKGADNSALDANGNAFDF 485 (514)
Q Consensus 408 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i--~~~~~~~~~~~~~~~~~~ 485 (514)
|||.++++|+.||.+.+||+..++. .....|...|.+++|+|+..+|+.+...+ |+| ++..... +++..+..+.
T Consensus 202 pDGslcasGgkdg~~~LwdL~~~k~--lysl~a~~~v~sl~fspnrywL~~at~~s-IkIwdl~~~~~v-~~l~~d~~g~ 277 (315)
T KOG0279|consen 202 PDGSLCASGGKDGEAMLWDLNEGKN--LYSLEAFDIVNSLCFSPNRYWLCAATATS-IKIWDLESKAVV-EELKLDGIGP 277 (315)
T ss_pred CCCCEEecCCCCceEEEEEccCCce--eEeccCCCeEeeEEecCCceeEeeccCCc-eEEEeccchhhh-hhcccccccc
Confidence 9999999999999999999998755 34557889999999999988887775444 888 2222211 1222222222
Q ss_pred -----ccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 486 -----SMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 486 -----~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
.-...+++|++||..|.++- ++.+.+|+
T Consensus 278 s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 278 SSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred ccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 34558899999999999886 77788886
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=270.91 Aligned_cols=413 Identities=14% Similarity=0.190 Sum_probs=293.0
Q ss_pred cccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccc
Q 010256 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (514)
Q Consensus 30 ~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (514)
...+|...|+++.|+..|..||+|+.|+.|.+||+-... -+..++||+
T Consensus 102 tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~-----------------------Gl~rL~GHk--------- 149 (888)
T KOG0306|consen 102 TFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEE-----------------------GLFRLRGHK--------- 149 (888)
T ss_pred eecccccceEEEEEcccCceEeecCCCccEEEEEeccce-----------------------eeEEeecch---------
Confidence 456899999999999999999999999999999987554 235689998
Q ss_pred ccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccC--------------C
Q 010256 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA--------------I 175 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------------~ 175 (514)
+.|+..-|. ....++++.+.|+.|++||+.+..+..+...+. +.++...... -
T Consensus 150 ---d~iT~~~F~--~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r--------~Eiw~l~~~~~~lvt~~~dse~~v~ 216 (888)
T KOG0306|consen 150 ---DSITQALFL--NGDSFLVSVSKDSMIKFWDLETQHCFETHVDHR--------GEIWALVLDEKLLVTAGTDSELKVW 216 (888)
T ss_pred ---HHHhHHhcc--CCCeEEEEeccCceEEEEecccceeeeEEeccc--------ceEEEEEEecceEEEEecCCceEEE
Confidence 889999994 445699999999999999999887665544332 2222100000 0
Q ss_pred ceeeccCC-------------Cccccc-------cCCCCCCcccCCCCCCcEEeceeecccc------------------
Q 010256 176 PKSYMANG-------------GCGERN-------FGCASNDSSFPPGGVSSLRLPVVVTSQE------------------ 217 (514)
Q Consensus 176 ~~~~~~~~-------------~~l~~~-------~~~~~~~~~~~~~~~~~i~i~~~~~~~~------------------ 217 (514)
.+++..|. ...... ....+.-+++.-+.|..+.++.+....+
T Consensus 217 ~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t 296 (888)
T KOG0306|consen 217 ELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAET 296 (888)
T ss_pred EeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccc
Confidence 12222222 111000 0011112333333333333333211000
Q ss_pred ----------------------------------------------------------cccccccc---ccccccCccCe
Q 010256 218 ----------------------------------------------------------TNLVAGCR---RIYAHAHDYHI 236 (514)
Q Consensus 218 ----------------------------------------------------------~~~~~~~~---~~~~~~h~~~v 236 (514)
.....++. ..-..+|...|
T Consensus 297 ~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dV 376 (888)
T KOG0306|consen 297 EENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDV 376 (888)
T ss_pred cccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhhe
Confidence 00000000 11236899999
Q ss_pred EEEEECCCCCEEEEecCCeEEEEeccCCCceeee----------------------------eccCC----CcccccCCc
Q 010256 237 NSISNNSDGETFISADDLRINLWNLEISNQSFNI----------------------------VDVKP----ANMEDLTEV 284 (514)
Q Consensus 237 ~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~----------------------------~~~~~----~~~~~~~~~ 284 (514)
++++++.+...+++|..+.+++|+..+.+....+ +++.. .+.+.|.+.
T Consensus 377 Rsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdga 456 (888)
T KOG0306|consen 377 RSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGA 456 (888)
T ss_pred eEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccc
Confidence 9999999999999999999999999865433221 11111 234678999
Q ss_pred eEEEEEecCCCcEEEEEecCCeEEEEEcCCCccc-cccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CC
Q 010256 285 ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC-DTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YM 362 (514)
Q Consensus 285 i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~ 362 (514)
|.+++.+||+ ..+++|+.|.+|++||..--... ....+.+..++. ..-.....|.++.+||||++|+.+- |.
T Consensus 457 IWsi~~~pD~-~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~-----rtLel~ddvL~v~~Spdgk~LaVsLLdn 530 (888)
T KOG0306|consen 457 IWSISLSPDN-KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHT-----RTLELEDDVLCVSVSPDGKLLAVSLLDN 530 (888)
T ss_pred eeeeeecCCC-CceEEecCCcEEEEEeEEEEeccCcccceeeeeccc-----eEEeccccEEEEEEcCCCcEEEEEeccC
Confidence 9999999999 89999999999999998532210 000111111110 0112235799999999999999984 69
Q ss_pred eEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCc
Q 010256 363 TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKN 442 (514)
Q Consensus 363 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 442 (514)
+++||-+++ -+..-++.+|.-+ |.++.+|||+++++|||.|..|++|-+.-|.+. +.+-+|.+
T Consensus 531 TVkVyflDt-lKFflsLYGHkLP---------------V~smDIS~DSklivTgSADKnVKiWGLdFGDCH-KS~fAHdD 593 (888)
T KOG0306|consen 531 TVKVYFLDT-LKFFLSLYGHKLP---------------VLSMDISPDSKLIVTGSADKNVKIWGLDFGDCH-KSFFAHDD 593 (888)
T ss_pred eEEEEEecc-eeeeeeecccccc---------------eeEEeccCCcCeEEeccCCCceEEeccccchhh-hhhhcccC
Confidence 999999998 8888888899866 459999999999999999999999999988665 78889999
Q ss_pred ceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 443 PMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 443 ~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
+|..+.|.|....+.++|.|+.|+-++|.+.. ......+|...|.+++.+|+|.++++++ +.++.+|.
T Consensus 594 Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe---~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 594 SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFE---EIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred ceeEEEEcccceeEEEecCcceEEeechhhhh---hheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 99999999999999999999999997666543 4455667999999999999999999887 68888884
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=268.65 Aligned_cols=282 Identities=15% Similarity=0.213 Sum_probs=242.4
Q ss_pred cccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccc
Q 010256 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (514)
..|++.|.|+.|+|...+++++-.+|.|.|||.++... ...++-.+
T Consensus 10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtm-----------------------VksfeV~~----------- 55 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTM-----------------------VKSFEVSE----------- 55 (794)
T ss_pred hccCCceeeeecCCCCceEEEeeecCeeEEEeccccee-----------------------eeeeeecc-----------
Confidence 35889999999999999999999999999999987763 34455444
Q ss_pred ccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
.+|.+..|.+..+ ++++|+.|..|++|+..+++....
T Consensus 56 -~PvRa~kfiaRkn--Wiv~GsDD~~IrVfnynt~ekV~~---------------------------------------- 92 (794)
T KOG0276|consen 56 -VPVRAAKFIARKN--WIVTGSDDMQIRVFNYNTGEKVKT---------------------------------------- 92 (794)
T ss_pred -cchhhheeeeccc--eEEEecCCceEEEEecccceeeEE----------------------------------------
Confidence 6788899976554 999999999999999988763322
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeee
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 270 (514)
+.+|.+.|++++.+|...+++++ +|-+|++||.+..-.+.
T Consensus 93 -------------------------------------FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~-- 133 (794)
T KOG0276|consen 93 -------------------------------------FEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACE-- 133 (794)
T ss_pred -------------------------------------eeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeee--
Confidence 26788999999999999999999 99999999998554433
Q ss_pred eccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEe
Q 010256 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (514)
Q Consensus 271 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 350 (514)
+++++|...|++++|+|...+.|++++-|++|++|.+.+... ..++.+|...|+++.+-
T Consensus 134 -----qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~----------------nfTl~gHekGVN~Vdyy 192 (794)
T KOG0276|consen 134 -----QTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHP----------------NFTLEGHEKGVNCVDYY 192 (794)
T ss_pred -----eEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCC----------------ceeeeccccCcceEEec
Confidence 278999999999999999889999999999999999976543 23366777899999998
Q ss_pred cC--CCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEec
Q 010256 351 RN--GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (514)
Q Consensus 351 ~~--g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 427 (514)
+. ..+|++|+| .+++|||.++ ..+++++.+|...++ .++|+|.=.++++|+.||+++||+.
T Consensus 193 ~~gdkpylIsgaDD~tiKvWDyQt-k~CV~TLeGHt~Nvs---------------~v~fhp~lpiiisgsEDGTvriWhs 256 (794)
T KOG0276|consen 193 TGGDKPYLISGADDLTIKVWDYQT-KSCVQTLEGHTNNVS---------------FVFFHPELPIIISGSEDGTVRIWNS 256 (794)
T ss_pred cCCCcceEEecCCCceEEEeecch-HHHHHHhhcccccce---------------EEEecCCCcEEEEecCCccEEEecC
Confidence 74 469999876 9999999998 999999999987654 8999999999999999999999999
Q ss_pred CCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 428 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.+- ++..++....+++++++..+..+.++.|...|.+.+
T Consensus 257 ~Ty-~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 257 KTY-KLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred cce-ehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 876 444788888899999999999999999999998887
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=278.49 Aligned_cols=272 Identities=20% Similarity=0.299 Sum_probs=219.0
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccc
Q 010256 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (514)
...++|..|++|+++||.|-.|..|++|.+...+.. .
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~-------------------------------------------~ 414 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLK-------------------------------------------K 414 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhc-------------------------------------------c
Confidence 357999999999999999999999999998755421 1
Q ss_pred eeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCC
Q 010256 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (514)
Q Consensus 115 v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (514)
+....+....+ +.+.|-.+.+-|............+ .++|+ ...|+|+.+.|
T Consensus 415 lk~~~~l~~~d-----~~sad~~~~~~D~~~~~~~~~L~GH--------~GPVy-------g~sFsPd~rfL-------- 466 (707)
T KOG0263|consen 415 LKDASDLSNID-----TESADVDVDMLDDDSSGTSRTLYGH--------SGPVY-------GCSFSPDRRFL-------- 466 (707)
T ss_pred ccchhhhcccc-----ccccchhhhhccccCCceeEEeecC--------CCcee-------eeeecccccce--------
Confidence 11111211111 2333333555555544433333333 47777 88999999999
Q ss_pred CCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeecc
Q 010256 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 273 (514)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~ 273 (514)
+++++|+++|+|. +. ...+...+ .+|..+|+++.|+|.|-+||++ .|++.++|........
T Consensus 467 ----lScSED~svRLWs-l~------t~s~~V~y-~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~Pl------ 528 (707)
T KOG0263|consen 467 ----LSCSEDSSVRLWS-LD------TWSCLVIY-KGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPL------ 528 (707)
T ss_pred ----eeccCCcceeeee-cc------cceeEEEe-cCCCcceeeEEecCCceEEEecCCCceeeeeecccCCch------
Confidence 9999999999998 22 24455555 7999999999999999999999 9999999999865443
Q ss_pred CCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCC
Q 010256 274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (514)
Q Consensus 274 ~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 353 (514)
+.+.+|.+.|.|+.|+|+. +++++|+.|.++|+||..+|.. .+.|.||.++|.+++|||+|
T Consensus 529 --RifaghlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~----------------VRiF~GH~~~V~al~~Sp~G 589 (707)
T KOG0263|consen 529 --RIFAGHLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNS----------------VRIFTGHKGPVTALAFSPCG 589 (707)
T ss_pred --hhhcccccccceEEECCcc-cccccCCCCceEEEEEcCCCcE----------------EEEecCCCCceEEEEEcCCC
Confidence 2578899999999999998 9999999999999999999876 24467788999999999999
Q ss_pred CEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 354 RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 354 ~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
++|++|++ +.|.+||+.. ++++..+.+|.+. |.++.|+.||..||+|+.|++|++||+..-
T Consensus 590 r~LaSg~ed~~I~iWDl~~-~~~v~~l~~Ht~t---------------i~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 590 RYLASGDEDGLIKIWDLAN-GSLVKQLKGHTGT---------------IYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred ceEeecccCCcEEEEEcCC-CcchhhhhcccCc---------------eeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999875 9999999998 8999999999665 349999999999999999999999998753
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=257.95 Aligned_cols=237 Identities=19% Similarity=0.267 Sum_probs=199.7
Q ss_pred cccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccc-cCCceEEEEEecCCCcEEEEEecCCe
Q 010256 229 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGS 306 (514)
Q Consensus 229 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~v~~~p~~~~~l~~~~~dg~ 306 (514)
+..|..+|+++.|++++.++++| .+|.|++|+....... .+.. |...|++++|+|+. ..|++++.||+
T Consensus 134 lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk---------~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ 203 (464)
T KOG0284|consen 134 LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVK---------IIQAHHAEAIRDLAFSPND-SKFLTCSDDGT 203 (464)
T ss_pred hhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhH---------HhhHhhhhhhheeccCCCC-ceeEEecCCCe
Confidence 47899999999999999999999 8999999998743322 2333 45899999999988 89999999999
Q ss_pred EEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeecccc
Q 010256 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHL 385 (514)
Q Consensus 307 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~ 385 (514)
|+|||....+. ...+.+|.-.|.+++|+|...+|++|++ ..|++||.++ +.++.++..|...
T Consensus 204 ikiWdf~~~ke----------------e~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS-g~cl~tlh~HKnt 266 (464)
T KOG0284|consen 204 IKIWDFRMPKE----------------ERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS-GSCLATLHGHKNT 266 (464)
T ss_pred EEEEeccCCch----------------hheeccCCCCcceeccCCccceeEEccCCceeEeecCCC-cchhhhhhhccce
Confidence 99999987553 2336778889999999999999999865 9999999998 9999999999876
Q ss_pred ccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCC-CCceeecCCCCe
Q 010256 386 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS-RPSRPLGSLSGV 464 (514)
Q Consensus 386 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~s~d~~ 464 (514)
|+.+.|+|++++|+++|.|..++++|+++. +.+.++++|...++++.|+|- ..++++|+.||.
T Consensus 267 ---------------Vl~~~f~~n~N~Llt~skD~~~kv~DiR~m-kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs 330 (464)
T KOG0284|consen 267 ---------------VLAVKFNPNGNWLLTGSKDQSCKVFDIRTM-KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS 330 (464)
T ss_pred ---------------EEEEEEcCCCCeeEEccCCceEEEEehhHh-HHHHHhhcchhhheeeccccccccceeeccCCCc
Confidence 459999999999999999999999999965 455899999999999999985 458899999999
Q ss_pred EEE--eeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEec-CcEEEE
Q 010256 465 VRR--VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS-NSLYMY 512 (514)
Q Consensus 465 v~i--~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~-~~~~i~ 512 (514)
|.. +...+ .+......|...|.+++|+|=|.+|++|+. ..+.+|
T Consensus 331 vvh~~v~~~~----p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw 377 (464)
T KOG0284|consen 331 VVHWVVGLEE----PLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFW 377 (464)
T ss_pred eEEEeccccc----cccCCCcccccceeeeeccccceeEeecCCCcceeee
Confidence 998 22122 233334469999999999999999999994 455555
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-36 Score=274.02 Aligned_cols=302 Identities=16% Similarity=0.231 Sum_probs=232.8
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
..++|..| ++++.++|.|..|..|++|.+...+++.+.....-...
T Consensus 379 ~~v~ca~f--SddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~-------------------------------- 424 (707)
T KOG0263|consen 379 QGVTCAEF--SDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNI-------------------------------- 424 (707)
T ss_pred CcceeEee--cCCcchhhccccccEEEEEecchhhhccccchhhhccc--------------------------------
Confidence 67999999 67888999999999999999987654443322110000
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
=+.+.|-.+.+.| .+. ....+. +.+|.++|....|+|+.++|+++ .|+++|+|.+.+....+
T Consensus 425 ------d~~sad~~~~~~D----~~~---~~~~~~-L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V--- 487 (707)
T KOG0263|consen 425 ------DTESADVDVDMLD----DDS---SGTSRT-LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV--- 487 (707)
T ss_pred ------cccccchhhhhcc----ccC---CceeEE-eecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---
Confidence 0111111122211 111 111122 48999999999999999999999 89999999999765544
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
...+|..+|..+.|+|.| .+||+++.|++-++|....... .+.+.+|.+.|.|++|+|
T Consensus 488 -----~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~P----------------lRifaghlsDV~cv~FHP 545 (707)
T KOG0263|consen 488 -----IYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNKP----------------LRIFAGHLSDVDCVSFHP 545 (707)
T ss_pred -----EecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCCc----------------hhhhcccccccceEEECC
Confidence 467999999999999999 9999999999999999876443 244667779999999999
Q ss_pred CCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 352 NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 352 ~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
+..|+++|+ |.+|++||+.+ +..++.+.+|... |++++|||+|++|++|+.||.|++||+.++
T Consensus 546 Ns~Y~aTGSsD~tVRlWDv~~-G~~VRiF~GH~~~---------------V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~ 609 (707)
T KOG0263|consen 546 NSNYVATGSSDRTVRLWDVST-GNSVRIFTGHKGP---------------VTALAFSPCGRYLASGDEDGLIKIWDLANG 609 (707)
T ss_pred cccccccCCCCceEEEEEcCC-CcEEEEecCCCCc---------------eEEEEEcCCCceEeecccCCcEEEEEcCCC
Confidence 999999986 49999999998 9999999999876 449999999999999999999999999987
Q ss_pred ceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCcc---------------------ccCCcccccccce
Q 010256 431 SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSAL---------------------DANGNAFDFSMKL 489 (514)
Q Consensus 431 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~---------------------~~~~~~~~~~~~v 489 (514)
.+...+.+|++.|.++.|+.+|..||+|+.|.+|++++-...... .+.+........|
T Consensus 610 -~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv 688 (707)
T KOG0263|consen 610 -SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPV 688 (707)
T ss_pred -cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceE
Confidence 455889999999999999999999999999999999222211110 1122223345677
Q ss_pred EEEEEcCCCCEEEEE
Q 010256 490 LHLAWHPSENSIACA 504 (514)
Q Consensus 490 ~~~~~spd~~~l~~~ 504 (514)
..+.|......|++|
T Consensus 689 ~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 689 VGLHFTRRNLLLAVG 703 (707)
T ss_pred EEEEEeccceeEEec
Confidence 888887777555554
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=246.40 Aligned_cols=283 Identities=18% Similarity=0.341 Sum_probs=230.7
Q ss_pred ccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccc
Q 010256 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (514)
.|.+.|.-+.||++|+|||+++.|.+..||++.... ..+...++.+|.
T Consensus 222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~--------------------~~kl~~tlvgh~------------ 269 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDV--------------------HFKLKKTLVGHS------------ 269 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCc--------------------ceeeeeeeeccc------------
Confidence 799999999999999999999999999999986544 245778899998
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
.+|..|.| +||+++|++++.|..+++||+.+|......
T Consensus 270 ~~V~yi~w--SPDdryLlaCg~~e~~~lwDv~tgd~~~~y---------------------------------------- 307 (519)
T KOG0293|consen 270 QPVSYIMW--SPDDRYLLACGFDEVLSLWDVDTGDLRHLY---------------------------------------- 307 (519)
T ss_pred CceEEEEE--CCCCCeEEecCchHheeeccCCcchhhhhc----------------------------------------
Confidence 89999999 667789999999999999999988632211
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
..+|...+.+.+|.|||..+++| .|+++..||++ +....
T Consensus 308 ------------------------------------~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~--- 347 (519)
T KOG0293|consen 308 ------------------------------------PSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILG--- 347 (519)
T ss_pred ------------------------------------ccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhh---
Confidence 12344678899999999999999 89999999998 33221
Q ss_pred ccCCCccccc-CCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEe
Q 010256 272 DVKPANMEDL-TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (514)
Q Consensus 272 ~~~~~~~~~~-~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 350 (514)
..++. ...|.+++..+|| ..+++.+.|..|++|+.++.... .....+ .+|+++..|
T Consensus 348 -----~W~gvr~~~v~dlait~Dg-k~vl~v~~d~~i~l~~~e~~~dr----~lise~-------------~~its~~iS 404 (519)
T KOG0293|consen 348 -----NWEGVRDPKVHDLAITYDG-KYVLLVTVDKKIRLYNREARVDR----GLISEE-------------QPITSFSIS 404 (519)
T ss_pred -----cccccccceeEEEEEcCCC-cEEEEEecccceeeechhhhhhh----cccccc-------------CceeEEEEc
Confidence 22222 3568999999999 88888889999999998775431 112221 579999999
Q ss_pred cCCCEEEEE-eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcC-CCCEEEEEeCCCcEEEEecC
Q 010256 351 RNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 351 ~~g~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~ 428 (514)
.+++++++. .+..+++||++. .+.+..+.+|....- +..-||-- +..++++||.|+.|+||+..
T Consensus 405 ~d~k~~LvnL~~qei~LWDl~e-~~lv~kY~Ghkq~~f-------------iIrSCFgg~~~~fiaSGSED~kvyIWhr~ 470 (519)
T KOG0293|consen 405 KDGKLALVNLQDQEIHLWDLEE-NKLVRKYFGHKQGHF-------------IIRSCFGGGNDKFIASGSEDSKVYIWHRI 470 (519)
T ss_pred CCCcEEEEEcccCeeEEeecch-hhHHHHhhcccccce-------------EEEeccCCCCcceEEecCCCceEEEEEcc
Confidence 999999986 558999999995 888888988875432 22445643 55799999999999999999
Q ss_pred CCceeeeeecCCCcceeEEEECCCCC-ceeecCCCCeEEE
Q 010256 429 EGSAESTTLEASKNPMRRQVQTPSRP-SRPLGSLSGVVRR 467 (514)
Q Consensus 429 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~s~d~~v~i 467 (514)
++ ++..++.||...|+.++++|..+ ++|++|.||+|||
T Consensus 471 sg-kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRI 509 (519)
T KOG0293|consen 471 SG-KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRI 509 (519)
T ss_pred CC-ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEE
Confidence 88 56689999999999999999765 6899999999999
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=244.55 Aligned_cols=277 Identities=17% Similarity=0.247 Sum_probs=231.3
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
.+|+.+-|+|. -..+++++.|++|++||..++++..
T Consensus 109 ~~vt~v~~hp~--~~~v~~as~d~tikv~D~~tg~~e~------------------------------------------ 144 (406)
T KOG0295|consen 109 SSVTRVIFHPS--EALVVSASEDATIKVFDTETGELER------------------------------------------ 144 (406)
T ss_pred cceeeeeeccC--ceEEEEecCCceEEEEEccchhhhh------------------------------------------
Confidence 88999999654 4488889999999999999886311
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
.+.+|...+.+++|+..|++++++ .|-.+++||.++...+.+
T Consensus 145 -----------------------------------~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~k-- 187 (406)
T KOG0295|consen 145 -----------------------------------SLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIK-- 187 (406)
T ss_pred -----------------------------------hhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHH--
Confidence 147898999999999999999999 888899999985444332
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
.+.+|...|.++.|-|.| .++++++.|.+|+.|++.++.. +++ +.+|...|..++.+.
T Consensus 188 -----s~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~c----v~t------------~~~h~ewvr~v~v~~ 245 (406)
T KOG0295|consen 188 -----SLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYC----VKT------------FPGHSEWVRMVRVNQ 245 (406)
T ss_pred -----HhcCcccceeeEEEEecC-CeeeecccccceeEEeccccee----EEe------------ccCchHhEEEEEecC
Confidence 567899999999999999 9999999999999999999987 333 555668999999999
Q ss_pred CCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCC---------------CCEEEE
Q 010256 352 NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD---------------GGRVAT 415 (514)
Q Consensus 352 ~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---------------~~~l~s 415 (514)
||.++++++. .+|++|-+.+ +.+...+..|+..+. +++|.|. +.++++
T Consensus 246 DGti~As~s~dqtl~vW~~~t-~~~k~~lR~hEh~vE---------------ci~wap~~~~~~i~~at~~~~~~~~l~s 309 (406)
T KOG0295|consen 246 DGTIIASCSNDQTLRVWVVAT-KQCKAELREHEHPVE---------------CIAWAPESSYPSISEATGSTNGGQVLGS 309 (406)
T ss_pred CeeEEEecCCCceEEEEEecc-chhhhhhhccccceE---------------EEEecccccCcchhhccCCCCCccEEEe
Confidence 9999999865 9999999998 888888888887754 5555442 358999
Q ss_pred EeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEc
Q 010256 416 GSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWH 495 (514)
Q Consensus 416 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s 495 (514)
++.|++|++||+.++.++ .++.+|.+.|+.++|+|.|+||+|+.+|+++++ |.+...........|..-|++++|+
T Consensus 310 ~SrDktIk~wdv~tg~cL-~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrv---wdl~~~~cmk~~~ah~hfvt~lDfh 385 (406)
T KOG0295|consen 310 GSRDKTIKIWDVSTGMCL-FTLVGHDNWVRGVAFSPGGKYILSCADDKTLRV---WDLKNLQCMKTLEAHEHFVTSLDFH 385 (406)
T ss_pred ecccceEEEEeccCCeEE-EEEecccceeeeeEEcCCCeEEEEEecCCcEEE---EEeccceeeeccCCCcceeEEEecC
Confidence 999999999999999655 799999999999999999999999999999999 3332222333344689999999999
Q ss_pred CCCCEEEEEe-cCcEEEE
Q 010256 496 PSENSIACAA-SNSLYMY 512 (514)
Q Consensus 496 pd~~~l~~~~-~~~~~i~ 512 (514)
.+..++++|+ +..+.+|
T Consensus 386 ~~~p~VvTGsVdqt~Kvw 403 (406)
T KOG0295|consen 386 KTAPYVVTGSVDQTVKVW 403 (406)
T ss_pred CCCceEEeccccceeeee
Confidence 9999999999 5555565
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=223.93 Aligned_cols=291 Identities=15% Similarity=0.261 Sum_probs=225.3
Q ss_pred eeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceeccc
Q 010256 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (514)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (514)
....+++|. +.+..++|+|.. |..|++++.|+.|++|+...+....
T Consensus 6 ~~~~~~gh~------------~r~W~~awhp~~-g~ilAscg~Dk~vriw~~~~~~s~~--------------------- 51 (312)
T KOG0645|consen 6 LEQKLSGHK------------DRVWSVAWHPGK-GVILASCGTDKAVRIWSTSSGDSWT--------------------- 51 (312)
T ss_pred eEEeecCCC------------CcEEEEEeccCC-ceEEEeecCCceEEEEecCCCCcEE---------------------
Confidence 445678888 889999997632 6799999999999999987432100
Q ss_pred ccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe
Q 010256 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 251 (514)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 251 (514)
++..+-.+|+..|++++|+|.|++|++|
T Consensus 52 ----------------------------------------------------ck~vld~~hkrsVRsvAwsp~g~~La~a 79 (312)
T KOG0645|consen 52 ----------------------------------------------------CKTVLDDGHKRSVRSVAWSPHGRYLASA 79 (312)
T ss_pred ----------------------------------------------------EEEeccccchheeeeeeecCCCcEEEEe
Confidence 1111226788999999999999999999
Q ss_pred -cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCC
Q 010256 252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (514)
Q Consensus 252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 330 (514)
-|.++.||.-..+.-. .+ .++++|...|.+++|+++| ++||+++.|+.|-||.+..+... +.
T Consensus 80 SFD~t~~Iw~k~~~efe--cv----~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEf-------ec--- 142 (312)
T KOG0645|consen 80 SFDATVVIWKKEDGEFE--CV----ATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEF-------EC--- 142 (312)
T ss_pred eccceEEEeecCCCcee--EE----eeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcE-------EE---
Confidence 8999999987643322 11 2789999999999999999 99999999999999999754431 11
Q ss_pred CCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccC--CCCceeeeeeccccccccccccccCCccceeeEEEc
Q 010256 331 PGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM--DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 407 (514)
Q Consensus 331 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 407 (514)
...+++|...|..+.|+|...+|++++. .+|++|+-.. .-.+.+++.+|... |++++|+
T Consensus 143 ---~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~T---------------VW~~~F~ 204 (312)
T KOG0645|consen 143 ---IAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENT---------------VWSLAFD 204 (312)
T ss_pred ---EeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccce---------------EEEEEec
Confidence 2357788899999999999999999886 9999998763 23467888888753 6799999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEee-CCCCCccc--cCC-ccc
Q 010256 408 GDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVK-GADNSALD--ANG-NAF 483 (514)
Q Consensus 408 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~-~~~~~~~~--~~~-~~~ 483 (514)
+.|..|++++.|+.++||...+. .-..|..+++.+.|. ...|++++.|+.+++.. ...+.... +.. ...
T Consensus 205 ~~G~rl~s~sdD~tv~Iw~~~~~-----~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~ 277 (312)
T KOG0645|consen 205 NIGSRLVSCSDDGTVSIWRLYTD-----LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEG 277 (312)
T ss_pred CCCceEEEecCCcceEeeeeccC-----cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhc
Confidence 99999999999999999997643 223467788889998 66899999999999932 22222111 111 223
Q ss_pred ccccceEEEEEcCC-CCEEEEEecCcEE
Q 010256 484 DFSMKLLHLAWHPS-ENSIACAASNSLY 510 (514)
Q Consensus 484 ~~~~~v~~~~~spd-~~~l~~~~~~~~~ 510 (514)
.|...|++++|.|. .++|+++++++++
T Consensus 278 aHe~dVNsV~w~p~~~~~L~s~~DDG~v 305 (312)
T KOG0645|consen 278 AHEVDVNSVQWNPKVSNRLASGGDDGIV 305 (312)
T ss_pred ccccccceEEEcCCCCCceeecCCCceE
Confidence 58889999999995 7788888866654
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=269.59 Aligned_cols=288 Identities=23% Similarity=0.425 Sum_probs=236.9
Q ss_pred ccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccc
Q 010256 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (514)
.|...|+|+.|+++|++|++++.++.+++|+..+.+. .....+.+|.
T Consensus 157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~---------------------~~~~~l~~h~------------ 203 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS---------------------NLLRELSGHT------------ 203 (456)
T ss_pred cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc---------------------hhhccccccc------------
Confidence 3478999999999999999999999999999865541 1334557787
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCcc-EEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
..|++++| ++++.++++++.|++|++||+... ....
T Consensus 204 ~~v~~~~f--s~d~~~l~s~s~D~tiriwd~~~~~~~~~----------------------------------------- 240 (456)
T KOG0266|consen 204 RGVSDVAF--SPDGSYLLSGSDDKTLRIWDLKDDGRNLK----------------------------------------- 240 (456)
T ss_pred cceeeeEE--CCCCcEEEEecCCceEEEeeccCCCeEEE-----------------------------------------
Confidence 88999999 667789999999999999999432 2211
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeee
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 270 (514)
. +.+|...|++++|+|+++.+++| .|++|++||+++++...
T Consensus 241 -----------------------------------~-l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~-- 282 (456)
T KOG0266|consen 241 -----------------------------------T-LKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVR-- 282 (456)
T ss_pred -----------------------------------E-ecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEE--
Confidence 1 36899999999999999999999 99999999999754432
Q ss_pred eccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEe
Q 010256 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (514)
Q Consensus 271 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 350 (514)
.+.+|.+.|++++|++++ ++|++++.|+.|++||+.++... ....+...+. .. +++++.|+
T Consensus 283 ------~l~~hs~~is~~~f~~d~-~~l~s~s~d~~i~vwd~~~~~~~--~~~~~~~~~~---------~~-~~~~~~fs 343 (456)
T KOG0266|consen 283 ------KLKGHSDGISGLAFSPDG-NLLVSASYDGTIRVWDLETGSKL--CLKLLSGAEN---------SA-PVTSVQFS 343 (456)
T ss_pred ------eeeccCCceEEEEECCCC-CEEEEcCCCccEEEEECCCCcee--eeecccCCCC---------CC-ceeEEEEC
Confidence 578899999999999999 89999999999999999998731 0222222221 11 59999999
Q ss_pred cCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCC
Q 010256 351 RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 351 ~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 429 (514)
|++++++++.. +.+++||+.. ...+..+.+|.... ..+++...++.+.++++|+.|+.|++|++.+
T Consensus 344 p~~~~ll~~~~d~~~~~w~l~~-~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 344 PNGKYLLSASLDRTLKLWDLRS-GKSVGTYTGHSNLV------------RCIFSPTLSTGGKLIYSGSEDGSVYVWDSSS 410 (456)
T ss_pred CCCcEEEEecCCCeEEEEEccC-CcceeeecccCCcc------------eeEecccccCCCCeEEEEeCCceEEEEeCCc
Confidence 99999999865 8999999997 88888888887541 1123566688999999999999999999998
Q ss_pred CceeeeeecCC-CcceeEEEECCCCCceeecC--CCCeEEE
Q 010256 430 GSAESTTLEAS-KNPMRRQVQTPSRPSRPLGS--LSGVVRR 467 (514)
Q Consensus 430 ~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~s--~d~~v~i 467 (514)
+ .....+++| ...+..+.++|..+++++++ .|+.+++
T Consensus 411 ~-~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~ 450 (456)
T KOG0266|consen 411 G-GILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRL 450 (456)
T ss_pred c-chhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEE
Confidence 6 455889999 88999999999999999998 6888887
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=256.64 Aligned_cols=387 Identities=14% Similarity=0.183 Sum_probs=287.9
Q ss_pred cccccccchhhccccCcc-cccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccc
Q 010256 12 AQPLEWKFSQVFGERTAG-EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF 90 (514)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~-~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (514)
+.-..|++.. |+.... ........|+|++-+|+.-+||.|..||.|+||+..++.
T Consensus 43 E~vn~WdlRt--ge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~---------------------- 98 (888)
T KOG0306|consen 43 EQVNIWDLRT--GEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEE---------------------- 98 (888)
T ss_pred ccEeEEeeec--chhhhhhhhhcccceEEEeeccCCcceEEEEecCceEEeeccCCCc----------------------
Confidence 3455688877 322111 112333589999999999999999999999999988664
Q ss_pred eeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecc
Q 010256 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (514)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (514)
...++.||. ..|+.+.| ...|..|++|+.|+.|.+||+-...-......+. ..+.
T Consensus 99 -~~~tfngHK------------~AVt~l~f--d~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHk--------d~iT-- 153 (888)
T KOG0306|consen 99 -ILITFNGHK------------AAVTTLKF--DKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHK--------DSIT-- 153 (888)
T ss_pred -eeeeecccc------------cceEEEEE--cccCceEeecCCCccEEEEEeccceeeEEeecch--------HHHh--
Confidence 446789998 89999999 7788899999999999999997765444444331 2222
Q ss_pred cccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEE
Q 010256 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 250 (514)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 250 (514)
...|..+.+.+ ++.+.|+.|++|| +.. ..|..+. -.|.+.++++++.+ +.+++
T Consensus 154 -----~~~F~~~~~~l------------vS~sKDs~iK~Wd-L~t------qhCf~Th-vd~r~Eiw~l~~~~--~~lvt 206 (888)
T KOG0306|consen 154 -----QALFLNGDSFL------------VSVSKDSMIKFWD-LET------QHCFETH-VDHRGEIWALVLDE--KLLVT 206 (888)
T ss_pred -----HHhccCCCeEE------------EEeccCceEEEEe-ccc------ceeeeEE-ecccceEEEEEEec--ceEEE
Confidence 33444445555 9999999999999 332 3344443 68899999999988 66777
Q ss_pred e-cCCeEEEEeccCC-----------------------------------------------------------------
Q 010256 251 A-DDLRINLWNLEIS----------------------------------------------------------------- 264 (514)
Q Consensus 251 ~-~d~~i~iwd~~~~----------------------------------------------------------------- 264 (514)
+ .|+.+++|++...
T Consensus 207 ~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk 286 (888)
T KOG0306|consen 207 AGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKK 286 (888)
T ss_pred EecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHH
Confidence 6 9999999998210
Q ss_pred ----------------------------------------------Cce----------eee--ec--cCC---------
Q 010256 265 ----------------------------------------------NQS----------FNI--VD--VKP--------- 275 (514)
Q Consensus 265 ----------------------------------------------~~~----------~~~--~~--~~~--------- 275 (514)
... ... ++ .++
T Consensus 287 ~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~ 366 (888)
T KOG0306|consen 287 LKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSN 366 (888)
T ss_pred HHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccce
Confidence 000 000 00 011
Q ss_pred CcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCE
Q 010256 276 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH 355 (514)
Q Consensus 276 ~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 355 (514)
-.+.+|...|++++++.+. ..+++| ..+.+++|+..+.++ ++++.. +.+.+..|-|.+++
T Consensus 367 i~~~GHR~dVRsl~vS~d~-~~~~Sg-a~~SikiWn~~t~kc----iRTi~~--------------~y~l~~~Fvpgd~~ 426 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDS-ILLASG-AGESIKIWNRDTLKC----IRTITC--------------GYILASKFVPGDRY 426 (888)
T ss_pred eeeccchhheeEEEeecCc-eeeeec-CCCcEEEEEccCcce----eEEecc--------------ccEEEEEecCCCce
Confidence 2346788899999999886 455544 467999999998876 455544 46889999999999
Q ss_pred EEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCC-----
Q 010256 356 ILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE----- 429 (514)
Q Consensus 356 l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~----- 429 (514)
++.|.+ |.+.+||+.. ...+.+.+.|++. +++++.+||++.+++||.|.+|++||..-
T Consensus 427 Iv~G~k~Gel~vfdlaS-~~l~Eti~AHdga---------------IWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~ 490 (888)
T KOG0306|consen 427 IVLGTKNGELQVFDLAS-ASLVETIRAHDGA---------------IWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVP 490 (888)
T ss_pred EEEeccCCceEEEEeeh-hhhhhhhhccccc---------------eeeeeecCCCCceEEecCCcEEEEEeEEEEeccC
Confidence 999987 9999999997 8888888888876 56999999999999999999999999742
Q ss_pred Cce-eeeeec-----CCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEE
Q 010256 430 GSA-ESTTLE-----ASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIAC 503 (514)
Q Consensus 430 ~~~-~~~~~~-----~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~ 503 (514)
+.+ ....+. .-.+.|.++.+|||+++||.+=.|.+|+++--..+ .+....++|.-+|++++.|||+++|++
T Consensus 491 gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl---KFflsLYGHkLPV~smDIS~DSklivT 567 (888)
T KOG0306|consen 491 GTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL---KFFLSLYGHKLPVLSMDISPDSKLIVT 567 (888)
T ss_pred cccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecce---eeeeeecccccceeEEeccCCcCeEEe
Confidence 111 101111 22467889999999999999999999999211111 234456679999999999999999998
Q ss_pred Ee-cCcEEEEe
Q 010256 504 AA-SNSLYMYY 513 (514)
Q Consensus 504 ~~-~~~~~i~~ 513 (514)
++ +.++.+|-
T Consensus 568 gSADKnVKiWG 578 (888)
T KOG0306|consen 568 GSADKNVKIWG 578 (888)
T ss_pred ccCCCceEEec
Confidence 87 88899983
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=222.09 Aligned_cols=286 Identities=16% Similarity=0.292 Sum_probs=221.5
Q ss_pred cccccceEEEEEcCC-CCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeee-ccCCCcccccccc
Q 010256 32 VQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF-QSHEPEFDYLKSL 109 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~-g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~ 109 (514)
-+|.+.|..++|+|- |..||+++.|..|+||+...+. .+.....+ .+|.
T Consensus 11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~--------------------s~~ck~vld~~hk--------- 61 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD--------------------SWTCKTVLDDGHK--------- 61 (312)
T ss_pred cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC--------------------cEEEEEeccccch---------
Confidence 478999999999998 8999999999999999987422 11222222 3566
Q ss_pred ccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
..|.+++| +|.|++|++++.|.++.||.-..++...+.
T Consensus 62 ---rsVRsvAw--sp~g~~La~aSFD~t~~Iw~k~~~efecv~------------------------------------- 99 (312)
T KOG0645|consen 62 ---RSVRSVAW--SPHGRYLASASFDATVVIWKKEDGEFECVA------------------------------------- 99 (312)
T ss_pred ---heeeeeee--cCCCcEEEEeeccceEEEeecCCCceeEEe-------------------------------------
Confidence 88999999 567789999999999999987765533321
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCcee
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 268 (514)
+ +.||...|.+++|+++|++||++ .|+.|-||.+.... .+
T Consensus 100 -------------------------------------~-lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd-Ef 140 (312)
T KOG0645|consen 100 -------------------------------------T-LEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD-EF 140 (312)
T ss_pred -------------------------------------e-eeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC-cE
Confidence 1 47899999999999999999999 99999999998433 33
Q ss_pred eeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEE
Q 010256 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (514)
Q Consensus 269 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (514)
... ..+++|...|..+.|+|.. .+|++++.|.+|++|+-..+.. .. ....+.+|.+.|.+++
T Consensus 141 ec~----aVL~~HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~ddd-W~------------c~~tl~g~~~TVW~~~ 202 (312)
T KOG0645|consen 141 ECI----AVLQEHTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDDD-WE------------CVQTLDGHENTVWSLA 202 (312)
T ss_pred EEE----eeeccccccccEEEEcCCc-ceeEEeccCCeEEEEeecCCCC-ee------------EEEEecCccceEEEEE
Confidence 322 2578899999999999998 8999999999999998763221 11 1234667778999999
Q ss_pred EecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEec
Q 010256 349 FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (514)
Q Consensus 349 ~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 427 (514)
|++.|..|+++++ ++++||.... .- -..|... ++.++|. ...|++++.|+.|++|.-
T Consensus 203 F~~~G~rl~s~sdD~tv~Iw~~~~-~~----~~~~sr~---------------~Y~v~W~--~~~IaS~ggD~~i~lf~~ 260 (312)
T KOG0645|consen 203 FDNIGSRLVSCSDDGTVSIWRLYT-DL----SGMHSRA---------------LYDVPWD--NGVIASGGGDDAIRLFKE 260 (312)
T ss_pred ecCCCceEEEecCCcceEeeeecc-Cc----chhcccc---------------eEeeeec--ccceEeccCCCEEEEEEe
Confidence 9999999999876 9999998653 10 0111111 2378887 457999999999999987
Q ss_pred CCCc--e----eeeeecCCCcceeEEEECCC-CCceeecCCCCeEEE
Q 010256 428 SEGS--A----ESTTLEASKNPMRRQVQTPS-RPSRPLGSLSGVVRR 467 (514)
Q Consensus 428 ~~~~--~----~~~~~~~~~~~v~~~~~~~~-~~~l~s~s~d~~v~i 467 (514)
...- . ....-..|...|+++.+.|. ...|++++.||.+++
T Consensus 261 s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~ 307 (312)
T KOG0645|consen 261 SDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNF 307 (312)
T ss_pred cCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEE
Confidence 6421 1 11233478889999999994 779999999999998
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=251.09 Aligned_cols=292 Identities=21% Similarity=0.319 Sum_probs=235.6
Q ss_pred cccccccccceEEEEEcC-CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccc
Q 010256 28 AGEEVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (514)
Q Consensus 28 ~~~~~~h~~~V~~~~~s~-~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 106 (514)
.....+|+..|+++.|.| .+.+|++++.|+.|+||++-+.+ ++++++.+|.
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~----------------------~~lrtf~gH~------ 258 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR----------------------RCLRTFKGHR------ 258 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc----------------------ceehhhhcch------
Confidence 334679999999999999 89999999999999999987533 3778999999
Q ss_pred cccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCC-Cc
Q 010256 107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG-GC 185 (514)
Q Consensus 107 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~ 185 (514)
.+|.+++| +.+|..|++++.|+.|++||+++|++...+.....+. ++.|.|++ +.
T Consensus 259 ------k~Vrd~~~--s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~----------------cvkf~pd~~n~ 314 (503)
T KOG0282|consen 259 ------KPVRDASF--NNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPT----------------CVKFHPDNQNI 314 (503)
T ss_pred ------hhhhhhhc--cccCCeeeeeecceeeeeeccccceEEEEEecCCCce----------------eeecCCCCCcE
Confidence 99999999 6788999999999999999999999888777653322 77899998 44
Q ss_pred cccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCC
Q 010256 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS 264 (514)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~ 264 (514)
+ ++|+.|+.|+.|| +...+ ..+.+ ..|-+.|..+.|-++|..++++ +|+++++|+.+.+
T Consensus 315 f------------l~G~sd~ki~~wD-iRs~k------vvqeY-d~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~ 374 (503)
T KOG0282|consen 315 F------------LVGGSDKKIRQWD-IRSGK------VVQEY-DRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIP 374 (503)
T ss_pred E------------EEecCCCcEEEEe-ccchH------HHHHH-HhhhhheeeeEEccCCceEeeeccCccEEEEEcCCC
Confidence 4 9999999999999 44433 33343 6788999999999999999999 9999999999865
Q ss_pred CceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccce
Q 010256 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (514)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 344 (514)
-....+ .........++..+|++ .+++.-+.|..|.+|.+...-.. ...+.|+++..+ +.-
T Consensus 375 v~ik~i-------~~~~~hsmP~~~~~P~~-~~~~aQs~dN~i~ifs~~~~~r~-nkkK~feGh~va----------Gys 435 (503)
T KOG0282|consen 375 VPIKNI-------ADPEMHTMPCLTLHPNG-KWFAAQSMDNYIAIFSTVPPFRL-NKKKRFEGHSVA----------GYS 435 (503)
T ss_pred ccchhh-------cchhhccCcceecCCCC-CeehhhccCceEEEEeccccccc-CHhhhhcceecc----------Cce
Confidence 443222 22234556789999999 89999999999999987543221 113344444322 456
Q ss_pred eEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCC-CEEEEEeCCCcE
Q 010256 345 SDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLF 422 (514)
Q Consensus 345 ~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i 422 (514)
..+.|||||++|++|+. |.+.+||.++ .+.+..++.|.... +.+.|+|.. ..+|+++.||.|
T Consensus 436 ~~v~fSpDG~~l~SGdsdG~v~~wdwkt-~kl~~~lkah~~~c---------------i~v~wHP~e~Skvat~~w~G~I 499 (503)
T KOG0282|consen 436 CQVDFSPDGRTLCSGDSDGKVNFWDWKT-TKLVSKLKAHDQPC---------------IGVDWHPVEPSKVATCGWDGLI 499 (503)
T ss_pred eeEEEcCCCCeEEeecCCccEEEeechh-hhhhhccccCCcce---------------EEEEecCCCcceeEecccCcee
Confidence 77999999999999965 9999999998 89999999997653 378999965 579999999999
Q ss_pred EEEe
Q 010256 423 RVFG 426 (514)
Q Consensus 423 ~iwd 426 (514)
++|+
T Consensus 500 kiwd 503 (503)
T KOG0282|consen 500 KIWD 503 (503)
T ss_pred EecC
Confidence 9996
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=236.29 Aligned_cols=294 Identities=15% Similarity=0.251 Sum_probs=239.1
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
.++..+.+.|..|||||+||++|+.||.|.+||..+++..... .|+....|.-++
T Consensus 209 KFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDL---------------kYQAqd~fMMmd---------- 263 (508)
T KOG0275|consen 209 KFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDL---------------KYQAQDNFMMMD---------- 263 (508)
T ss_pred ecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhh---------------hhhhhcceeecc----------
Confidence 3456788999999999999999999999999999988853111 111122344455
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
+.|.|+.| +.|..++++|+.||.|++|.+++|.
T Consensus 264 --~aVlci~F--SRDsEMlAsGsqDGkIKvWri~tG~------------------------------------------- 296 (508)
T KOG0275|consen 264 --DAVLCISF--SRDSEMLASGSQDGKIKVWRIETGQ------------------------------------------- 296 (508)
T ss_pred --cceEEEee--cccHHHhhccCcCCcEEEEEEecch-------------------------------------------
Confidence 88999999 6788899999999999999998875
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
|.+.|..+|+..|.|+.|+.|+..++++ .|.++++.-+..++...
T Consensus 297 ---------------------------------ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LK- 342 (508)
T KOG0275|consen 297 ---------------------------------CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLK- 342 (508)
T ss_pred ---------------------------------HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHH-
Confidence 2333446899999999999999999998 89999999999776553
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
.+.+|...|+...|.++| +.+++++.||+|++|+..+.++ ..+|+... ...+|.++..
T Consensus 343 -------EfrGHsSyvn~a~ft~dG-~~iisaSsDgtvkvW~~KtteC----~~Tfk~~~----------~d~~vnsv~~ 400 (508)
T KOG0275|consen 343 -------EFRGHSSYVNEATFTDDG-HHIISASSDGTVKVWHGKTTEC----LSTFKPLG----------TDYPVNSVIL 400 (508)
T ss_pred -------HhcCccccccceEEcCCC-CeEEEecCCccEEEecCcchhh----hhhccCCC----------CcccceeEEE
Confidence 578999999999999999 8999999999999999999876 34444322 1246888887
Q ss_pred ecC-CCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEec
Q 010256 350 ARN-GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (514)
Q Consensus 350 s~~-g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 427 (514)
-|. -..++.+.. .+|.|.++. ++.+.++........ +..+++.||.|.++.+.+.|+.++-|..
T Consensus 401 ~PKnpeh~iVCNrsntv~imn~q--GQvVrsfsSGkREgG------------dFi~~~lSpkGewiYcigED~vlYCF~~ 466 (508)
T KOG0275|consen 401 LPKNPEHFIVCNRSNTVYIMNMQ--GQVVRSFSSGKREGG------------DFINAILSPKGEWIYCIGEDGVLYCFSV 466 (508)
T ss_pred cCCCCceEEEEcCCCeEEEEecc--ceEEeeeccCCccCC------------ceEEEEecCCCcEEEEEccCcEEEEEEe
Confidence 774 456666655 899999987 788888765443221 1237889999999999999999999999
Q ss_pred CCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 428 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.+| .+..++..|...+-.++-+|..+.||+-++||.+++
T Consensus 467 ~sG-~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKL 505 (508)
T KOG0275|consen 467 LSG-KLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKL 505 (508)
T ss_pred ecC-ceeeeeecccccccccccCcccchhhhhcccchhhh
Confidence 988 455899999999999999999999999999999887
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-33 Score=218.13 Aligned_cols=265 Identities=17% Similarity=0.309 Sum_probs=213.7
Q ss_pred cccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccc
Q 010256 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (514)
-.|+++|.++.|+-||+|.++++.|.+|++|+...+. +++++.+|.
T Consensus 14 ~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~-----------------------liktYsghG----------- 59 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA-----------------------LIKTYSGHG----------- 59 (307)
T ss_pred cccccceEEEEEccCCCEEEEcCCCceEEeecccccc-----------------------eeeeecCCC-----------
Confidence 4688999999999999999999999999999976555 668899998
Q ss_pred ccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
..|..++. +.|...|++++.|+.+.+||+.+|+....
T Consensus 60 -~EVlD~~~--s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr---------------------------------------- 96 (307)
T KOG0316|consen 60 -HEVLDAAL--SSDNSKFASCGGDKAVQVWDVNTGKVDRR---------------------------------------- 96 (307)
T ss_pred -ceeeeccc--cccccccccCCCCceEEEEEcccCeeeee----------------------------------------
Confidence 67999988 56667899999999999999999874321
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeee
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 270 (514)
+.+|.+.|+.+.|+.+...+++| -|.++++||-+......-
T Consensus 97 -------------------------------------~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePi- 138 (307)
T KOG0316|consen 97 -------------------------------------FRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPI- 138 (307)
T ss_pred -------------------------------------cccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCcc-
Confidence 26888999999999999999999 899999999985442211
Q ss_pred eccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEe
Q 010256 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (514)
Q Consensus 271 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 350 (514)
+.+....+.|.++.... ..|++|+.||++|.||++.|.+.. .+- ..+|+++.|+
T Consensus 139 -----Qildea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l~s----Dy~--------------g~pit~vs~s 192 (307)
T KOG0316|consen 139 -----QILDEAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTLSS----DYF--------------GHPITSVSFS 192 (307)
T ss_pred -----chhhhhcCceeEEEecc---cEEEeeccCCcEEEEEeecceeeh----hhc--------------CCcceeEEec
Confidence 24556678899998865 579999999999999999988631 111 2589999999
Q ss_pred cCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCC
Q 010256 351 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 351 ~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 429 (514)
++++..++++ ++++++.|-.+ ++.++.+++|..... ...++++.....+++|+.||.|++||+..
T Consensus 193 ~d~nc~La~~l~stlrLlDk~t-GklL~sYkGhkn~ey-------------kldc~l~qsdthV~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 193 KDGNCSLASSLDSTLRLLDKET-GKLLKSYKGHKNMEY-------------KLDCCLNQSDTHVFSGSEDGKVYFWDLVD 258 (307)
T ss_pred CCCCEEEEeeccceeeecccch-hHHHHHhccccccee-------------eeeeeecccceeEEeccCCceEEEEEecc
Confidence 9999988876 59999999998 999999999987543 22678888888999999999999999987
Q ss_pred CceeeeeecCCCcc-eeEEEECCC
Q 010256 430 GSAESTTLEASKNP-MRRQVQTPS 452 (514)
Q Consensus 430 ~~~~~~~~~~~~~~-v~~~~~~~~ 452 (514)
... ...++.+... +..+.++|.
T Consensus 259 ~~~-~sk~~~~~~v~v~dl~~hp~ 281 (307)
T KOG0316|consen 259 ETQ-ISKLSVVSTVIVTDLSCHPT 281 (307)
T ss_pred cee-eeeeccCCceeEEeeecccC
Confidence 633 3444444333 344444443
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=232.08 Aligned_cols=295 Identities=14% Similarity=0.247 Sum_probs=244.5
Q ss_pred cccCCccceeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCcccc
Q 010256 83 SMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAA 162 (514)
Q Consensus 83 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 162 (514)
...|+..+++.+.+.+|. +.|.++++- |-.++|++|+.|++|+|||+.+++++..
T Consensus 134 rPeWHapwKl~rVi~gHl------------gWVr~vavd--P~n~wf~tgs~DrtikIwDlatg~Lklt----------- 188 (460)
T KOG0285|consen 134 RPEWHAPWKLYRVISGHL------------GWVRSVAVD--PGNEWFATGSADRTIKIWDLATGQLKLT----------- 188 (460)
T ss_pred CccccCcceehhhhhhcc------------ceEEEEeeC--CCceeEEecCCCceeEEEEcccCeEEEe-----------
Confidence 345777888889999998 999999995 4457999999999999999999875432
Q ss_pred CCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEEC
Q 010256 163 GNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNN 242 (514)
Q Consensus 163 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 242 (514)
+.+|...|..++++
T Consensus 189 ------------------------------------------------------------------ltGhi~~vr~vavS 202 (460)
T KOG0285|consen 189 ------------------------------------------------------------------LTGHIETVRGVAVS 202 (460)
T ss_pred ------------------------------------------------------------------ecchhheeeeeeec
Confidence 35777889999999
Q ss_pred CCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccc
Q 010256 243 SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH 321 (514)
Q Consensus 243 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 321 (514)
+...++.++ .|+.|+.||++..+... .+.+|-..|.+++.+|.- ..|++|+.|..+|+||+|+...+
T Consensus 203 ~rHpYlFs~gedk~VKCwDLe~nkvIR--------~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V--- 270 (460)
T KOG0285|consen 203 KRHPYLFSAGEDKQVKCWDLEYNKVIR--------HYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASV--- 270 (460)
T ss_pred ccCceEEEecCCCeeEEEechhhhhHH--------HhccccceeEEEeccccc-eeEEecCCcceEEEeeecccceE---
Confidence 999999999 99999999999655432 578899999999999998 89999999999999999997652
Q ss_pred ccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccc
Q 010256 322 SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFD 400 (514)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (514)
..+.+|..+|.++.+.|-...+++|+ |++|++||++. ++...++..|...+
T Consensus 271 -------------~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~a-gkt~~tlt~hkksv-------------- 322 (460)
T KOG0285|consen 271 -------------HVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRA-GKTMITLTHHKKSV-------------- 322 (460)
T ss_pred -------------EEecCCCCcceeEEeecCCCceEEecCCceEEEeeecc-CceeEeeeccccee--------------
Confidence 33677889999999999777788876 69999999997 99999998887653
Q ss_pred eeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE---eeCCCCCcc-
Q 010256 401 KFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR---VKGADNSAL- 476 (514)
Q Consensus 401 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i---~~~~~~~~~- 476 (514)
.+++.+|....+|+++.| .|+-|++..+... +.+.+|..-++.+....|+ ++++|+++|.+.+ ..|.+....
T Consensus 323 -ral~lhP~e~~fASas~d-nik~w~~p~g~f~-~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~ 398 (460)
T KOG0285|consen 323 -RALCLHPKENLFASASPD-NIKQWKLPEGEFL-QNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQ 398 (460)
T ss_pred -eEEecCCchhhhhccCCc-cceeccCCccchh-hccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCccccccc
Confidence 389999999999999887 5899999988544 5699999999999988774 7789999999988 334444422
Q ss_pred -ccCCcccccccceEEEEEcCCCCEEEEEe-cCcEEEE
Q 010256 477 -DANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMY 512 (514)
Q Consensus 477 -~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~~i~ 512 (514)
....-.++.+..|++.+|...|..|+++. ++.+.+|
T Consensus 399 t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~ 436 (460)
T KOG0285|consen 399 TIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMY 436 (460)
T ss_pred ccccCCccccccceeEEeecccCceEEeccCCcceEEE
Confidence 12233445678999999999999988775 7777777
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-32 Score=245.42 Aligned_cols=280 Identities=24% Similarity=0.401 Sum_probs=228.2
Q ss_pred cccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccc
Q 010256 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (514)
.+|.++|++++|+|++++|++++.||.|++|++.+++ ....+..|.
T Consensus 6 ~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~-----------------------~~~~~~~~~----------- 51 (289)
T cd00200 6 KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-----------------------LLRTLKGHT----------- 51 (289)
T ss_pred cccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC-----------------------cEEEEecCC-----------
Confidence 3789999999999999999999999999999987654 234556676
Q ss_pred ccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
..+..+.|+ ++++++++++.|+.|++|++.+++....
T Consensus 52 -~~i~~~~~~--~~~~~l~~~~~~~~i~i~~~~~~~~~~~---------------------------------------- 88 (289)
T cd00200 52 -GPVRDVAAS--ADGTYLASGSSDKTIRLWDLETGECVRT---------------------------------------- 88 (289)
T ss_pred -cceeEEEEC--CCCCEEEEEcCCCeEEEEEcCcccceEE----------------------------------------
Confidence 778899995 5557999999999999999986531111
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeee
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 270 (514)
+..|...+.++.|++++++++++ .++.|++||+++.+...
T Consensus 89 -------------------------------------~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-- 129 (289)
T cd00200 89 -------------------------------------LTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT-- 129 (289)
T ss_pred -------------------------------------EeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEE--
Confidence 13455689999999999999988 69999999998554433
Q ss_pred eccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEe
Q 010256 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (514)
Q Consensus 271 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 350 (514)
.+..|...+.++.|+|++ .++++++.++.|++||+++++.. .. +..|...+.++.|+
T Consensus 130 ------~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~----~~------------~~~~~~~i~~~~~~ 186 (289)
T cd00200 130 ------TLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGKCV----AT------------LTGHTGEVNSVAFS 186 (289)
T ss_pred ------EeccCCCcEEEEEEcCcC-CEEEEEcCCCcEEEEEccccccc----ee------------EecCccccceEEEC
Confidence 334678889999999997 78888888999999999876542 22 23445689999999
Q ss_pred cCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCC
Q 010256 351 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 351 ~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 429 (514)
|+++.+++++ ++.|++||+.. ++.+..+..|... +.+++|+|++.++++++.||.|++|++.+
T Consensus 187 ~~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~---------------i~~~~~~~~~~~~~~~~~~~~i~i~~~~~ 250 (289)
T cd00200 187 PDGEKLLSSSSDGTIKLWDLST-GKCLGTLRGHENG---------------VNSVAFSPDGYLLASGSEDGTIRVWDLRT 250 (289)
T ss_pred CCcCEEEEecCCCcEEEEECCC-CceecchhhcCCc---------------eEEEEEcCCCcEEEEEcCCCcEEEEEcCC
Confidence 9998888865 59999999986 6777766555533 34899999999999888899999999987
Q ss_pred CceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 430 GSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 430 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+. ....+..|...+..+.++|+++++++++.|+.+++
T Consensus 251 ~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 287 (289)
T cd00200 251 GE-CVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRI 287 (289)
T ss_pred ce-eEEEccccCCcEEEEEECCCCCEEEEecCCCeEEe
Confidence 64 44677789999999999999999999999999987
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=227.42 Aligned_cols=281 Identities=14% Similarity=0.231 Sum_probs=238.8
Q ss_pred cccccccceEEEEEcC---CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccc
Q 010256 30 EEVQEVDIISAIEFDK---SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (514)
Q Consensus 30 ~~~~h~~~V~~~~~s~---~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 106 (514)
.-.+|+.+|-.++||| +|-+|++++.||.-.+-+-+++. .+.+|.||.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgd-----------------------wigtfeghk------ 59 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGD-----------------------WIGTFEGHK------ 59 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCC-----------------------cEEeeeccC------
Confidence 4568999999999997 89999999999988887777666 558899999
Q ss_pred cccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcc
Q 010256 107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (514)
Q Consensus 107 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 186 (514)
+.|.+... +.+...-++++.|-+-++||.-+|....
T Consensus 60 ------gavw~~~l--~~na~~aasaaadftakvw~a~tgdelh------------------------------------ 95 (334)
T KOG0278|consen 60 ------GAVWSATL--NKNATRAASAAADFTAKVWDAVTGDELH------------------------------------ 95 (334)
T ss_pred ------cceeeeec--Cchhhhhhhhcccchhhhhhhhhhhhhh------------------------------------
Confidence 88999888 5666677788999999999987664211
Q ss_pred ccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCC
Q 010256 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN 265 (514)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~ 265 (514)
...|+..|.+++|+.|.++|++| .+..+|+||++..+
T Consensus 96 ------------------------------------------sf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~ 133 (334)
T KOG0278|consen 96 ------------------------------------------SFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK 133 (334)
T ss_pred ------------------------------------------hhhhhheeeeEEecccchhhhccchHHHhhhhhccCCC
Confidence 14577789999999999999999 99999999998665
Q ss_pred ceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecccccee
Q 010256 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (514)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 345 (514)
.. |..+.+|.+.|..+.|.... +.|++.+.|++||+||.+++.. +++++.. .+|+
T Consensus 134 Ap-------p~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~----v~sL~~~-------------s~Vt 188 (334)
T KOG0278|consen 134 AP-------PKEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGTE----VQSLEFN-------------SPVT 188 (334)
T ss_pred CC-------chhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCcE----EEEEecC-------------CCCc
Confidence 43 34678999999999998877 7888889999999999999987 3444433 5799
Q ss_pred EEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEE
Q 010256 346 DIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 425 (514)
Q Consensus 346 ~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 425 (514)
++.++++|++|..+..+.|.+||.++ ..+++.+..... |.+...+|+...+++|+.|..++.|
T Consensus 189 SlEvs~dG~ilTia~gssV~Fwdaks-f~~lKs~k~P~n----------------V~SASL~P~k~~fVaGged~~~~kf 251 (334)
T KOG0278|consen 189 SLEVSQDGRILTIAYGSSVKFWDAKS-FGLLKSYKMPCN----------------VESASLHPKKEFFVAGGEDFKVYKF 251 (334)
T ss_pred ceeeccCCCEEEEecCceeEEecccc-ccceeeccCccc----------------cccccccCCCceEEecCcceEEEEE
Confidence 99999999999998878999999997 777777766543 3378899999999999999999999
Q ss_pred ecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 426 GCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 426 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
|..++..+....++|.++|.++.|+|+|...|+||+||+||+
T Consensus 252 Dy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirl 293 (334)
T KOG0278|consen 252 DYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRL 293 (334)
T ss_pred eccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEE
Confidence 999996664446899999999999999999999999999999
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=252.66 Aligned_cols=295 Identities=16% Similarity=0.223 Sum_probs=239.2
Q ss_pred cccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccc
Q 010256 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (514)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (514)
.+..|..++|+|...+++++-..|.|++||..-+. ++..|..|+ +
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t-----------------------li~rFdeHd------------G 52 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT-----------------------LIDRFDEHD------------G 52 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhh-----------------------HHhhhhccC------------C
Confidence 35789999999999999999999999999987655 446688888 9
Q ss_pred ceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCC
Q 010256 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (514)
Q Consensus 114 ~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (514)
+|..++|+|..+ ++++|+.|..|++|+..+.++...
T Consensus 53 pVRgv~FH~~qp--lFVSGGDDykIkVWnYk~rrclft------------------------------------------ 88 (1202)
T KOG0292|consen 53 PVRGVDFHPTQP--LFVSGGDDYKIKVWNYKTRRCLFT------------------------------------------ 88 (1202)
T ss_pred ccceeeecCCCC--eEEecCCccEEEEEecccceehhh------------------------------------------
Confidence 999999976554 999999999999999987653211
Q ss_pred CCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeec
Q 010256 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (514)
Q Consensus 194 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~ 272 (514)
+.+|-+.|+.+.|++.-.+|+++ +|.+|+||+..+.+...
T Consensus 89 -----------------------------------L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~ia---- 129 (1202)
T KOG0292|consen 89 -----------------------------------LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIA---- 129 (1202)
T ss_pred -----------------------------------hccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEE----
Confidence 37888999999999999999999 99999999999665443
Q ss_pred cCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccccccee-------------ccCCCCccceeec
Q 010256 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE-------------EQEAPGTRSFFTE 339 (514)
Q Consensus 273 ~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~ 339 (514)
.+.+|...|+|..|+|.. .+++++|-|.+||+||+..-+.....--.++ +..+..-..++.|
T Consensus 130 ----vltGHnHYVMcAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEG 204 (1202)
T KOG0292|consen 130 ----VLTGHNHYVMCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEG 204 (1202)
T ss_pred ----EEecCceEEEeeccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecc
Confidence 578999999999999988 8999999999999999975332111000010 0011112346789
Q ss_pred cccceeEEEEecCCCEEEEEeC-CeEEEEEccCC-CCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe
Q 010256 340 IIASISDIKFARNGRHILSRDY-MTLKLWDINMD-SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 417 (514)
Q Consensus 340 ~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 417 (514)
|...|+-++|+|.-.++++|+| ..|++|.+... .-.+.+..+|...+ .++-|+|..++|++.+
T Consensus 205 HDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnV---------------ssvlfhp~q~lIlSns 269 (1202)
T KOG0292|consen 205 HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNV---------------SSVLFHPHQDLILSNS 269 (1202)
T ss_pred cccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCc---------------ceEEecCccceeEecC
Confidence 9999999999999999999876 99999998741 23466777777654 3999999999999999
Q ss_pred CCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 418 YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 418 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.|++|+|||+.... ..++++...++.+.++.+|..+++|.|-..|.+-.
T Consensus 270 EDksirVwDm~kRt-~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VF 318 (1202)
T KOG0292|consen 270 EDKSIRVWDMTKRT-SVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVF 318 (1202)
T ss_pred CCccEEEEeccccc-ceeeeeccCCeEEEEEecCCcceeeeecCCceEEE
Confidence 99999999998763 44788878889999999999999998877776655
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-31 Score=268.91 Aligned_cols=254 Identities=23% Similarity=0.353 Sum_probs=191.0
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
...|.+.|++++|+|+|++||+|+.|+.|+||+.......+.. .......+.++
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~---------------~~~~~~~~~~~----------- 532 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRD---------------IHYPVVELASR----------- 532 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccc---------------cccceEEeccc-----------
Confidence 4468999999999999999999999999999997542110000 00011122222
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|.+++|++ ..+.+|++++.||+|++||+.+++....
T Consensus 533 --~~v~~l~~~~-~~~~~las~~~Dg~v~lWd~~~~~~~~~--------------------------------------- 570 (793)
T PLN00181 533 --SKLSGICWNS-YIKSQVASSNFEGVVQVWDVARSQLVTE--------------------------------------- 570 (793)
T ss_pred --CceeeEEecc-CCCCEEEEEeCCCeEEEEECCCCeEEEE---------------------------------------
Confidence 5689999975 3456899999999999999987653211
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC-CCCEEEEe-cCCeEEEEeccCCCcee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSF 268 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~ 268 (514)
+.+|...|.+++|+| ++.+|++| .|++|++||++++....
T Consensus 571 --------------------------------------~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~ 612 (793)
T PLN00181 571 --------------------------------------MKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIG 612 (793)
T ss_pred --------------------------------------ecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEE
Confidence 256888999999997 78899999 89999999998654432
Q ss_pred eeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEE
Q 010256 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (514)
Q Consensus 269 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (514)
. +. +...+.++.|++..+.+|++|+.||.|++||+++.... . ..+.+|...|.++.
T Consensus 613 ~--------~~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~---~------------~~~~~h~~~V~~v~ 668 (793)
T PLN00181 613 T--------IK-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLP---L------------CTMIGHSKTVSYVR 668 (793)
T ss_pred E--------Ee-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCcc---c------------eEecCCCCCEEEEE
Confidence 2 22 23578999996543389999999999999999875421 1 12456778999999
Q ss_pred EecCCCEEEEEe-CCeEEEEEccCC-----CCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcE
Q 010256 349 FARNGRHILSRD-YMTLKLWDINMD-----SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 422 (514)
Q Consensus 349 ~s~~g~~l~~~~-~~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 422 (514)
|. ++.+|++++ |++|++||+... ..++..+.+|...+ ..++|+|++++|++|+.|+.|
T Consensus 669 f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i---------------~~v~~s~~~~~lasgs~D~~v 732 (793)
T PLN00181 669 FV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVK---------------NFVGLSVSDGYIATGSETNEV 732 (793)
T ss_pred Ee-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCe---------------eEEEEcCCCCEEEEEeCCCEE
Confidence 97 677888865 599999999742 24567777776542 379999999999999999999
Q ss_pred EEEecCCC
Q 010256 423 RVFGCSEG 430 (514)
Q Consensus 423 ~iwd~~~~ 430 (514)
++|+....
T Consensus 733 ~iw~~~~~ 740 (793)
T PLN00181 733 FVYHKAFP 740 (793)
T ss_pred EEEECCCC
Confidence 99998654
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=222.15 Aligned_cols=278 Identities=17% Similarity=0.261 Sum_probs=225.2
Q ss_pred CcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC
Q 010256 164 NGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS 243 (514)
Q Consensus 164 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 243 (514)
.+.|+ .+.|.|+|.++ ++++.|..|.+|++ ...+... .. +.+|++.|..+.|.+
T Consensus 47 ~geI~-------~~~F~P~gs~~------------aSgG~Dr~I~LWnv-~gdceN~-----~~-lkgHsgAVM~l~~~~ 100 (338)
T KOG0265|consen 47 KGEIY-------TIKFHPDGSCF------------ASGGSDRAIVLWNV-YGDCENF-----WV-LKGHSGAVMELHGMR 100 (338)
T ss_pred cceEE-------EEEECCCCCeE------------eecCCcceEEEEec-cccccce-----ee-eccccceeEeeeecc
Confidence 46677 88999999999 99999999999993 3322211 11 379999999999999
Q ss_pred CCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccc
Q 010256 244 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS 322 (514)
Q Consensus 244 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 322 (514)
|+..++++ .|.+++.||+++++... .+.+|...+.++.-+.-|..++.+++.|+++++||+|+... +
T Consensus 101 d~s~i~S~gtDk~v~~wD~~tG~~~r--------k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~----~ 168 (338)
T KOG0265|consen 101 DGSHILSCGTDKTVRGWDAETGKRIR--------KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA----I 168 (338)
T ss_pred CCCEEEEecCCceEEEEecccceeee--------hhccccceeeecCccccCCeEEEecCCCceEEEEeecccch----h
Confidence 99999999 99999999999887664 56789999999986667777889999999999999998765 4
Q ss_pred cceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccce
Q 010256 323 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 401 (514)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 401 (514)
++++.+ ..++++.|...+..+.+|. |+.|++||++. ...+.++.+|... |
T Consensus 169 ~t~~~k-------------yqltAv~f~d~s~qv~sggIdn~ikvWd~r~-~d~~~~lsGh~Dt---------------I 219 (338)
T KOG0265|consen 169 KTFENK-------------YQLTAVGFKDTSDQVISGGIDNDIKVWDLRK-NDGLYTLSGHADT---------------I 219 (338)
T ss_pred hccccc-------------eeEEEEEecccccceeeccccCceeeecccc-CcceEEeecccCc---------------e
Confidence 444433 4689999999998888875 69999999997 8899999999876 4
Q ss_pred eeEEEcCCCCEEEEEeCCCcEEEEecCCC---ceeeeeecCCCcc----eeEEEECCCCCceeecCCCCeEEEeeCCCCC
Q 010256 402 FECCLSGDGGRVATGSYSNLFRVFGCSEG---SAESTTLEASKNP----MRRQVQTPSRPSRPLGSLSGVVRRVKGADNS 474 (514)
Q Consensus 402 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~----v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~ 474 (514)
+.+..+++|.++.+-+-|.++++||++.. +.....+.+|.-. .-...|+|++.++..|+.|+.+.+++....
T Consensus 220 t~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r- 298 (338)
T KOG0265|consen 220 TGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR- 298 (338)
T ss_pred eeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc-
Confidence 48999999999999999999999998753 2334566665432 346788999999999999999999443322
Q ss_pred ccccCCcccccccceEEEEEcCCCCEEEEEe-cCcEEE
Q 010256 475 ALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYM 511 (514)
Q Consensus 475 ~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~~i 511 (514)
.+.....+|.+.|++++|+|...+|..++ ++.+|+
T Consensus 299 --~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 299 --RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred --cEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 23344557999999999999999998666 555543
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-32 Score=255.51 Aligned_cols=282 Identities=19% Similarity=0.316 Sum_probs=225.1
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
..|.++.| +++|..+++++.|+.+++|+....+. .
T Consensus 160 ~sv~~~~f--s~~g~~l~~~~~~~~i~~~~~~~~~~------~------------------------------------- 194 (456)
T KOG0266|consen 160 PSVTCVDF--SPDGRALAAASSDGLIRIWKLEGIKS------N------------------------------------- 194 (456)
T ss_pred CceEEEEE--cCCCCeEEEccCCCcEEEeecccccc------h-------------------------------------
Confidence 77888999 67788899999999999998854431 0
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
..+. +.+|...|++++|+|++++++++ .|++|++||+.......+
T Consensus 195 -------------------------------~~~~-l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~-- 240 (456)
T KOG0266|consen 195 -------------------------------LLRE-LSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLK-- 240 (456)
T ss_pred -------------------------------hhcc-ccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEE--
Confidence 0011 26788999999999999999999 999999999954444433
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
++.+|...|++++|+|++ +++++|+.|++|++||+++++.. + .+.+|...|++++|++
T Consensus 241 -----~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~----~------------~l~~hs~~is~~~f~~ 298 (456)
T KOG0266|consen 241 -----TLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECV----R------------KLKGHSDGISGLAFSP 298 (456)
T ss_pred -----EecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEE----E------------eeeccCCceEEEEECC
Confidence 578999999999999999 99999999999999999997762 2 3566778999999999
Q ss_pred CCCEEEEEe-CCeEEEEEccCCCC--ceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecC
Q 010256 352 NGRHILSRD-YMTLKLWDINMDSG--PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 352 ~g~~l~~~~-~~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 428 (514)
++.+|++++ |+.|+|||+.+ +. ++..+..+.... .+..++|+|++++|+++..|+.+++||+.
T Consensus 299 d~~~l~s~s~d~~i~vwd~~~-~~~~~~~~~~~~~~~~-------------~~~~~~fsp~~~~ll~~~~d~~~~~w~l~ 364 (456)
T KOG0266|consen 299 DGNLLVSASYDGTIRVWDLET-GSKLCLKLLSGAENSA-------------PVTSVQFSPNGKYLLSASLDRTLKLWDLR 364 (456)
T ss_pred CCCEEEEcCCCccEEEEECCC-CceeeeecccCCCCCC-------------ceeEEEECCCCcEEEEecCCCeEEEEEcc
Confidence 999999987 49999999997 55 455665555431 14489999999999999999999999999
Q ss_pred CCceeeeeecCCCcc---eeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCccccc-ccceEEEEEcCCCCEEEEE
Q 010256 429 EGSAESTTLEASKNP---MRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDF-SMKLLHLAWHPSENSIACA 504 (514)
Q Consensus 429 ~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~-~~~v~~~~~spd~~~l~~~ 504 (514)
.+... ..+.+|... +.+...++.++++++|+.|+.|++.+-. ..........| ...+..++|+|..++++++
T Consensus 365 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~---s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~ 440 (456)
T KOG0266|consen 365 SGKSV-GTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSS---SGGILQRLEGHSKAAVSDLSSHPTENLIASS 440 (456)
T ss_pred CCcce-eeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCC---ccchhhhhcCCCCCceeccccCCCcCeeeec
Confidence 87444 677777664 4455568899999999999999993222 11222334457 8899999999999999988
Q ss_pred e---cCcEEEEe
Q 010256 505 A---SNSLYMYY 513 (514)
Q Consensus 505 ~---~~~~~i~~ 513 (514)
+ +..+.+|.
T Consensus 441 s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 441 SFEGDGLIRLWK 452 (456)
T ss_pred CcCCCceEEEec
Confidence 7 66677774
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-32 Score=227.44 Aligned_cols=300 Identities=18% Similarity=0.286 Sum_probs=234.8
Q ss_pred cCcccccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccc
Q 010256 26 RTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDY 105 (514)
Q Consensus 26 ~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 105 (514)
+.+.+.+.|.+.|+++... ++++++|+.||.++||+.... ....+.||.
T Consensus 96 P~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk------------------------~~~~~~Ght----- 144 (423)
T KOG0313|consen 96 PKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK------------------------SIKTIVGHT----- 144 (423)
T ss_pred CCccccccchhhhhhhccc--CceEEEeecCCeeEEEecCCc------------------------eEEEEecCC-----
Confidence 3445678899999999988 789999999999999997543 346788998
Q ss_pred ccccccccceeEEEEeeCC-CCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCC
Q 010256 106 LKSLEIEEKINKIRWCQSA-NSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (514)
Q Consensus 106 ~~~~~~~~~v~~i~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 184 (514)
++|.+++|.... ....|++++.|.++++|.++.++....
T Consensus 145 -------~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~--------------------------------- 184 (423)
T KOG0313|consen 145 -------GPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVK--------------------------------- 184 (423)
T ss_pred -------cceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhh---------------------------------
Confidence 889988886432 234699999999999999887642110
Q ss_pred ccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccC
Q 010256 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI 263 (514)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~ 263 (514)
+... ..||...|.+++..++|..+++| .|.+|++|+..+
T Consensus 185 ---------------------------------------~~~~-~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~ 224 (423)
T KOG0313|consen 185 ---------------------------------------ALKV-CRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVET 224 (423)
T ss_pred ---------------------------------------HHhH-hcccccceeEEEecCCCCeEEeecccceeeecccCC
Confidence 0000 14999999999999999999999 899999999332
Q ss_pred CCc-eeeeec----------------cCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccccccee
Q 010256 264 SNQ-SFNIVD----------------VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 326 (514)
Q Consensus 264 ~~~-~~~~~~----------------~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 326 (514)
... ..+-.. ....++.+|..+|.++.|++. ..+++++.|.+|+.||+.++..... +.
T Consensus 225 ~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~~----~~ 298 (423)
T KOG0313|consen 225 DEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKST----LT 298 (423)
T ss_pred CccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC--CceEeecccceEEEEEeecccceee----ee
Confidence 110 000000 011357899999999999994 5899999999999999999886422 22
Q ss_pred ccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCC--ceeeeeeccccccccccccccCCccceee
Q 010256 327 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSG--PVATFQVHEHLRPKLCDLYENDSIFDKFE 403 (514)
Q Consensus 327 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 403 (514)
.. ..+.++..+|..++|++|+ |..+++||.+++.. ...++.+|...+. +
T Consensus 299 ~~-------------ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVs---------------s 350 (423)
T KOG0313|consen 299 TN-------------KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVS---------------S 350 (423)
T ss_pred cC-------------cceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhh---------------h
Confidence 22 4689999999999999975 59999999987432 4567888888754 8
Q ss_pred EEEcCCCCE-EEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCC
Q 010256 404 CCLSGDGGR-VATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGA 471 (514)
Q Consensus 404 ~~~s~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~ 471 (514)
+.|+|...+ |++|+.|+++++||+++.+..+..+.+|.+.|.++.|. ++.++++|+.|.++++.++.
T Consensus 351 vkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 351 VKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred eecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 999997764 77999999999999998865668899999999999986 45689999999999994443
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=238.34 Aligned_cols=289 Identities=21% Similarity=0.349 Sum_probs=223.9
Q ss_pred eeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccc
Q 010256 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (514)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (514)
...+.+|. ..|+++.|.|. .+.+|++++.|+.|+||++...
T Consensus 207 ~~~~~gH~------------kgvsai~~fp~-~~hLlLS~gmD~~vklW~vy~~-------------------------- 247 (503)
T KOG0282|consen 207 SHNLSGHT------------KGVSAIQWFPK-KGHLLLSGGMDGLVKLWNVYDD-------------------------- 247 (503)
T ss_pred eeeccCCc------------cccchhhhccc-eeeEEEecCCCceEEEEEEecC--------------------------
Confidence 35677887 88999999763 4678999999999999998652
Q ss_pred cCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-
Q 010256 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA- 251 (514)
Q Consensus 173 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~- 251 (514)
..++++| .+|..+|.+++|+++|..|+++
T Consensus 248 -------------------------------------------------~~~lrtf-~gH~k~Vrd~~~s~~g~~fLS~s 277 (503)
T KOG0282|consen 248 -------------------------------------------------RRCLRTF-KGHRKPVRDASFNNCGTSFLSAS 277 (503)
T ss_pred -------------------------------------------------cceehhh-hcchhhhhhhhccccCCeeeeee
Confidence 1133444 7999999999999999999999
Q ss_pred cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCC
Q 010256 252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (514)
Q Consensus 252 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 331 (514)
-|+.|++||+++++...++ .....++++.|+|++++.|++|..|+.|+.||+|+++.+. .
T Consensus 278 fD~~lKlwDtETG~~~~~f---------~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvq----e------- 337 (503)
T KOG0282|consen 278 FDRFLKLWDTETGQVLSRF---------HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQ----E------- 337 (503)
T ss_pred cceeeeeeccccceEEEEE---------ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHH----H-------
Confidence 8999999999988776543 1356688999999998999999999999999999998742 2
Q ss_pred CccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCC
Q 010256 332 GTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 410 (514)
Q Consensus 332 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 410 (514)
+..|-+.|..+.|-++|+.+++.+| +.++||+.+. ..++.....+.... .-++..+|++
T Consensus 338 -----Yd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~-~v~ik~i~~~~~hs--------------mP~~~~~P~~ 397 (503)
T KOG0282|consen 338 -----YDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRI-PVPIKNIADPEMHT--------------MPCLTLHPNG 397 (503)
T ss_pred -----HHhhhhheeeeEEccCCceEeeeccCccEEEEEcCC-Cccchhhcchhhcc--------------CcceecCCCC
Confidence 3345578999999999999999876 9999999987 44443332221110 1189999999
Q ss_pred CEEEEEeCCCcEEEEecCCCce--eeeeecCCCcc--eeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccc
Q 010256 411 GRVATGSYSNLFRVFGCSEGSA--ESTTLEASKNP--MRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFS 486 (514)
Q Consensus 411 ~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~--v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~ 486 (514)
++++.-+.|+.|.+|.+...-+ ....+++|..+ -..+.|||||.+|++|+.||.+.+++.. ...+....-.|.
T Consensus 398 ~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwk---t~kl~~~lkah~ 474 (503)
T KOG0282|consen 398 KWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWK---TTKLVSKLKAHD 474 (503)
T ss_pred CeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeech---hhhhhhccccCC
Confidence 9999999999999998764322 22667888655 4467899999999999999999993322 112333444588
Q ss_pred cceEEEEEcCCCC-EEEEEe-cCcEEEEe
Q 010256 487 MKLLHLAWHPSEN-SIACAA-SNSLYMYY 513 (514)
Q Consensus 487 ~~v~~~~~spd~~-~l~~~~-~~~~~i~~ 513 (514)
..+..+.|+|-.. .+|+++ ++.+.+|.
T Consensus 475 ~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 475 QPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999854 466666 67777773
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-32 Score=236.21 Aligned_cols=309 Identities=18% Similarity=0.259 Sum_probs=230.3
Q ss_pred cccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccc
Q 010256 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (514)
..|+..|+++++.|.|..|++|+.|..|++||+...... .+.++.+.-...|
T Consensus 164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas----------------~~~fr~l~P~E~h------------ 215 (641)
T KOG0772|consen 164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS----------------MRSFRQLQPCETH------------ 215 (641)
T ss_pred cCCceEEEEeeecCCCceeeeccccceEEEEeccccccc----------------chhhhccCccccc------------
Confidence 467889999999999999999999999999998765431 0111222222334
Q ss_pred ccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
.|++++|+ +.|..|++.+.....+|+|-...+........ +++
T Consensus 216 --~i~sl~ys--~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGD----------------------------QYI----- 258 (641)
T KOG0772|consen 216 --QINSLQYS--VTGDQILVVSGSAQAKLLDRDGFEIVEFSKGD----------------------------QYI----- 258 (641)
T ss_pred --ccceeeec--CCCCeEEEEecCcceeEEccCCceeeeeeccc----------------------------hhh-----
Confidence 49999995 46668888888889999997766543322211 111
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCC-CEEEEe-cCCeEEEEeccCCCceee
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
-| .. ...||...++|.+|+|+. +.++++ .||++++||++..+....
T Consensus 259 ------------------~D----m~----------nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q 306 (641)
T KOG0772|consen 259 ------------------RD----MY----------NTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ 306 (641)
T ss_pred ------------------hh----hh----------ccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhee
Confidence 11 00 137999999999999984 456666 999999999998776666
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecccc--ceeEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA--SISDI 347 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~ 347 (514)
++..+ ...+..-.+++++|+|++ .+||+|+.||.|.+|+....... +... +-..|.. .|++|
T Consensus 307 Vik~k--~~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~--p~~~-----------vk~AH~~g~~Itsi 370 (641)
T KOG0772|consen 307 VIKTK--PAGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVR--PVMK-----------VKDAHLPGQDITSI 370 (641)
T ss_pred EEeec--cCCCcccCceeeecCCCc-chhhhcccCCceeeeecCCcccc--cceE-----------eeeccCCCCceeEE
Confidence 54333 334567788999999999 89999999999999998553321 1111 1234544 89999
Q ss_pred EEecCCCEEEEE-eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeC------CC
Q 010256 348 KFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY------SN 420 (514)
Q Consensus 348 ~~s~~g~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------dg 420 (514)
.||+||++|++. .|+++++||++...+++.+..+-... +.-+.++|||+.++|++|+. .|
T Consensus 371 ~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~-------------~~~tdc~FSPd~kli~TGtS~~~~~~~g 437 (641)
T KOG0772|consen 371 SFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTP-------------FPGTDCCFSPDDKLILTGTSAPNGMTAG 437 (641)
T ss_pred EeccccchhhhccCCCceeeeeccccccchhhhcCCCcc-------------CCCCccccCCCceEEEecccccCCCCCc
Confidence 999999999994 56999999999877777666543321 12237999999999999863 47
Q ss_pred cEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 421 LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 421 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.+.+||..+. .....+......|..+.|+|.-+.|..|+.||++++
T Consensus 438 ~L~f~d~~t~-d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~v 483 (641)
T KOG0772|consen 438 TLFFFDRMTL-DTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHV 483 (641)
T ss_pred eEEEEeccce-eeEEEecCCCceEEEEeecchhhheeeecCCCceEE
Confidence 8999998876 344666677888999999999999999999999999
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-31 Score=210.83 Aligned_cols=286 Identities=17% Similarity=0.230 Sum_probs=223.6
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|..+++-+.++.+|++|.+++.|..+.+|-..+++ .+.++.||.
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe-----------------------rlGty~GHt---------- 52 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE-----------------------RLGTYDGHT---------- 52 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCc-----------------------eeeeecCCC----------
Confidence 45899999999999999999999999999999987776 457899999
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
+.|.++.. +.+.+++++|+.|.++++||+++|+.......+
T Consensus 53 --GavW~~Di--d~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~----------------------------------- 93 (327)
T KOG0643|consen 53 --GAVWCCDI--DWDSKHLITGSADQTAKLWDVETGKQLATWKTN----------------------------------- 93 (327)
T ss_pred --ceEEEEEe--cCCcceeeeccccceeEEEEcCCCcEEEEeecC-----------------------------------
Confidence 99999998 566779999999999999999999865544432
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-c-----CCeEEEEeccCC
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D-----DLRINLWNLEIS 264 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~-----d~~i~iwd~~~~ 264 (514)
.+|..+.|+++|++++.+ + .+.|.++|++..
T Consensus 94 -------------------------------------------~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~ 130 (327)
T KOG0643|consen 94 -------------------------------------------SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDD 130 (327)
T ss_pred -------------------------------------------CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCC
Confidence 457788899998887765 3 578999999843
Q ss_pred CceeeeeccCC-CcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccc
Q 010256 265 NQSFNIVDVKP-ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 343 (514)
Q Consensus 265 ~~~~~~~~~~~-~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (514)
..... .-.| ..+..+...++.+.|.|-+ ..|++|..||.|..||.++++.. +. ....|...
T Consensus 131 ~~~~~--s~ep~~kI~t~~skit~a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~~---v~------------s~~~h~~~ 192 (327)
T KOG0643|consen 131 SSDID--SEEPYLKIPTPDSKITSALWGPLG-ETIIAGHEDGSISIYDARTGKEL---VD------------SDEEHSSK 192 (327)
T ss_pred hhhhc--ccCceEEecCCccceeeeeecccC-CEEEEecCCCcEEEEEcccCcee---ee------------chhhhccc
Confidence 21100 0000 1334567889999999999 89999999999999999998653 11 13446679
Q ss_pred eeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcE
Q 010256 344 ISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 422 (514)
Q Consensus 344 i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 422 (514)
|+.++++||..++++++ |.+-++||+.+ -..++++..... |.+.+++|....++.|+.....
T Consensus 193 Ind~q~s~d~T~FiT~s~Dttakl~D~~t-l~v~Kty~te~P----------------vN~aaisP~~d~VilgGGqeA~ 255 (327)
T KOG0643|consen 193 INDLQFSRDRTYFITGSKDTTAKLVDVRT-LEVLKTYTTERP----------------VNTAAISPLLDHVILGGGQEAM 255 (327)
T ss_pred cccccccCCcceEEecccCccceeeeccc-eeeEEEeeeccc----------------ccceecccccceEEecCCceee
Confidence 99999999999999986 49999999997 777777765543 2388999987777765532211
Q ss_pred --------------EEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 423 --------------RVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 423 --------------~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
++|++-. +.+...+++|.+||++++|+|+|+..+||++||.||+
T Consensus 256 dVTTT~~r~GKFEArFyh~i~-eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~ 313 (327)
T KOG0643|consen 256 DVTTTSTRAGKFEARFYHLIF-EEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRL 313 (327)
T ss_pred eeeeecccccchhhhHHHHHH-HHHhccccccccCcceeEECCCCcccccCCCCceEEE
Confidence 1222211 1233567799999999999999999999999999999
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=219.49 Aligned_cols=312 Identities=16% Similarity=0.235 Sum_probs=234.3
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
...|+.++.+.+|||||.++|||+.|-.|+|.|++..-....++...... .-+. +..++++-.|.
T Consensus 108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~--~qa~---hPvIRTlYDH~---------- 172 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGD--TQAR---HPVIRTLYDHV---------- 172 (430)
T ss_pred EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCC--cccC---CceEeehhhcc----------
Confidence 34799999999999999999999999999999987332211111111100 0111 23666777787
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
+.|+++.|+|. ..+|++++.|++|+++|+.....++..
T Consensus 173 --devn~l~FHPr--e~ILiS~srD~tvKlFDfsK~saKrA~-------------------------------------- 210 (430)
T KOG0640|consen 173 --DEVNDLDFHPR--ETILISGSRDNTVKLFDFSKTSAKRAF-------------------------------------- 210 (430)
T ss_pred --Ccccceeecch--hheEEeccCCCeEEEEecccHHHHHHH--------------------------------------
Confidence 88999999664 459999999999999998754211110
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
+. .....+|.++.|+|.|.+|+.| +..++++||+++.+....
T Consensus 211 -----------------------------------K~--~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs 253 (430)
T KOG0640|consen 211 -----------------------------------KV--FQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS 253 (430)
T ss_pred -----------------------------------HH--hhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeee
Confidence 00 1223679999999999999999 889999999997654332
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
- . .-..|.+.|+++.+++.+ ++.++|+.||.|++||--++++ +.++..... ...|++..|
T Consensus 254 a---n--Pd~qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rC----v~t~~~AH~----------gsevcSa~F 313 (430)
T KOG0640|consen 254 A---N--PDDQHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRC----VRTIGNAHG----------GSEVCSAVF 313 (430)
T ss_pred c---C--cccccccceeEEEecCCc-cEEEEeccCCcEEeeccccHHH----HHHHHhhcC----------CceeeeEEE
Confidence 1 1 335689999999999999 8999999999999999887776 444443221 257999999
Q ss_pred ecCCCEEEEE-eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe-CCCcEEEEec
Q 010256 350 ARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGC 427 (514)
Q Consensus 350 s~~g~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~ 427 (514)
..+|+|+++. -|..+++|.+.+ ++++.++.+........ + -+...|+....|++.-. ..+.+.-||.
T Consensus 314 tkn~kyiLsSG~DS~vkLWEi~t-~R~l~~YtGAg~tgrq~---~-------rtqAvFNhtEdyVl~pDEas~slcsWda 382 (430)
T KOG0640|consen 314 TKNGKYILSSGKDSTVKLWEIST-GRMLKEYTGAGTTGRQK---H-------RTQAVFNHTEDYVLFPDEASNSLCSWDA 382 (430)
T ss_pred ccCCeEEeecCCcceeeeeeecC-CceEEEEecCCcccchh---h-------hhhhhhcCccceEEccccccCceeeccc
Confidence 9999999985 569999999998 99999888763221100 0 11456777777776554 4578999999
Q ss_pred CCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 428 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
++..+....--+|.++++.+.-+|.+..+++||.|...|+
T Consensus 383 Rtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRF 422 (430)
T KOG0640|consen 383 RTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARF 422 (430)
T ss_pred cchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeee
Confidence 9886655555699999999999999999999999999988
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-31 Score=236.64 Aligned_cols=278 Identities=18% Similarity=0.238 Sum_probs=229.4
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
+.|.++.|+|..+ .++++-.+|.|.|||.++......+...
T Consensus 14 dRVKsVd~HPteP--w~la~LynG~V~IWnyetqtmVksfeV~------------------------------------- 54 (794)
T KOG0276|consen 14 DRVKSVDFHPTEP--WILAALYNGDVQIWNYETQTMVKSFEVS------------------------------------- 54 (794)
T ss_pred CceeeeecCCCCc--eEEEeeecCeeEEEecccceeeeeeeec-------------------------------------
Confidence 8899999977665 9999999999999999987654432221
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
.-+|++..|-+..+++++| +|..|++|+.++.++..
T Consensus 55 ----------------------------------------~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~--- 91 (794)
T KOG0276|consen 55 ----------------------------------------EVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVK--- 91 (794)
T ss_pred ----------------------------------------ccchhhheeeeccceEEEecCCceEEEEecccceeeE---
Confidence 1466777788888899999 99999999999887664
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
.++.|.+.|++++.+|.. .++++++.|-.|++||.+..-.+ .+ ++.||...|++++|.|
T Consensus 92 -----~FeAH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~wa~---~q------------tfeGH~HyVMqv~fnP 150 (794)
T KOG0276|consen 92 -----TFEAHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEWAC---EQ------------TFEGHEHYVMQVAFNP 150 (794)
T ss_pred -----EeeccccceeeeeecCCC-CeEEecCCccEEEEeeccCceee---ee------------EEcCcceEEEEEEecC
Confidence 678999999999999998 79999999999999999876443 23 3566778999999999
Q ss_pred -CCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCC--CEEEEEeCCCcEEEEec
Q 010256 352 -NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG--GRVATGSYSNLFRVFGC 427 (514)
Q Consensus 352 -~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~s~~~dg~i~iwd~ 427 (514)
|...+++++ |++|+||.+.. ..+..++.+|+..++ ++++-+.| .+|++|++|..++|||.
T Consensus 151 kD~ntFaS~sLDrTVKVWslgs-~~~nfTl~gHekGVN---------------~Vdyy~~gdkpylIsgaDD~tiKvWDy 214 (794)
T KOG0276|consen 151 KDPNTFASASLDRTVKVWSLGS-PHPNFTLEGHEKGVN---------------CVDYYTGGDKPYLISGADDLTIKVWDY 214 (794)
T ss_pred CCccceeeeeccccEEEEEcCC-CCCceeeeccccCcc---------------eEEeccCCCcceEEecCCCceEEEeec
Confidence 566788876 69999999997 888999999987654 88887644 69999999999999999
Q ss_pred CCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecC
Q 010256 428 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASN 507 (514)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~ 507 (514)
++..+. ++++||...|..+.|+|.-+++++||+||++||....... +.....=-..+|.+++-.+.++.+++|.++
T Consensus 215 Qtk~CV-~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~---lE~tLn~gleRvW~I~~~k~~~~i~vG~De 290 (794)
T KOG0276|consen 215 QTKSCV-QTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYK---LEKTLNYGLERVWCIAAHKGDGKIAVGFDE 290 (794)
T ss_pred chHHHH-HHhhcccccceEEEecCCCcEEEEecCCccEEEecCccee---hhhhhhcCCceEEEEeecCCCCeEEEeccC
Confidence 987665 8999999999999999999999999999999993332222 222111125789999999999999999998
Q ss_pred cEEEEe
Q 010256 508 SLYMYY 513 (514)
Q Consensus 508 ~~~i~~ 513 (514)
+.++..
T Consensus 291 g~i~v~ 296 (794)
T KOG0276|consen 291 GSVTVK 296 (794)
T ss_pred CcEEEE
Confidence 887764
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-29 Score=209.25 Aligned_cols=278 Identities=19% Similarity=0.254 Sum_probs=213.8
Q ss_pred cccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccc
Q 010256 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (514)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (514)
-...|+++.|+++|.+|++++.|..++|||..+++. ..++..++ -
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~-----------------------~~ti~skk------------y 57 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ-----------------------VKTINSKK------------Y 57 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce-----------------------eeEeeccc------------c
Confidence 357899999999999999999999999999987773 34555554 5
Q ss_pred ceeEEEEeeCCCCcEEEEeeC--CCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 114 KINKIRWCQSANSALYLLSTN--DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 114 ~v~~i~~~~~~~~~~l~s~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
.|..++|...+ ..++.++. |.+||..++.+++..+
T Consensus 58 G~~~~~Fth~~--~~~i~sStk~d~tIryLsl~dNkylR----------------------------------------- 94 (311)
T KOG1446|consen 58 GVDLACFTHHS--NTVIHSSTKEDDTIRYLSLHDNKYLR----------------------------------------- 94 (311)
T ss_pred cccEEEEecCC--ceEEEccCCCCCceEEEEeecCceEE-----------------------------------------
Confidence 68888886333 34555544 8889888887765322
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeee
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 270 (514)
++.||...|++++.+|-+..++++ .|++|++||++..+....+
T Consensus 95 ------------------------------------YF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l 138 (311)
T KOG1446|consen 95 ------------------------------------YFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL 138 (311)
T ss_pred ------------------------------------EcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE
Confidence 147999999999999999999999 8999999999965544322
Q ss_pred eccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEe
Q 010256 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (514)
Q Consensus 271 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 350 (514)
+...-..++|.|.| -++|++.....|++||+|.-.. .+..+|.... +-....+.+.||
T Consensus 139 ----------~~~~~pi~AfDp~G-LifA~~~~~~~IkLyD~Rs~dk--gPF~tf~i~~---------~~~~ew~~l~FS 196 (311)
T KOG1446|consen 139 ----------NLSGRPIAAFDPEG-LIFALANGSELIKLYDLRSFDK--GPFTTFSITD---------NDEAEWTDLEFS 196 (311)
T ss_pred ----------ecCCCcceeECCCC-cEEEEecCCCeEEEEEecccCC--CCceeEccCC---------CCccceeeeEEc
Confidence 12233467899999 8889888888999999997532 1123332221 122578999999
Q ss_pred cCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCC
Q 010256 351 RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 351 ~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 429 (514)
|||++|+.++. +.+++.|.-. |..+.++..+....... .+.+|+||++++++|+.||+|.+|++++
T Consensus 197 ~dGK~iLlsT~~s~~~~lDAf~-G~~~~tfs~~~~~~~~~------------~~a~ftPds~Fvl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 197 PDGKSILLSTNASFIYLLDAFD-GTVKSTFSGYPNAGNLP------------LSATFTPDSKFVLSGSDDGTIHVWNLET 263 (311)
T ss_pred CCCCEEEEEeCCCcEEEEEccC-CcEeeeEeeccCCCCcc------------eeEEECCCCcEEEEecCCCcEEEEEcCC
Confidence 99999998876 8999999987 88888888776542100 1789999999999999999999999999
Q ss_pred CceeeeeecC-CCcceeEEEECCCCCceeecCC
Q 010256 430 GSAESTTLEA-SKNPMRRQVQTPSRPSRPLGSL 461 (514)
Q Consensus 430 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~s~ 461 (514)
+.+. ..+.+ +..++..+.|+|....+++++.
T Consensus 264 g~~v-~~~~~~~~~~~~~~~fnP~~~mf~sa~s 295 (311)
T KOG1446|consen 264 GKKV-AVLRGPNGGPVSCVRFNPRYAMFVSASS 295 (311)
T ss_pred CcEe-eEecCCCCCCccccccCCceeeeeecCc
Confidence 8554 66666 7899999999999877777753
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-30 Score=232.43 Aligned_cols=276 Identities=20% Similarity=0.347 Sum_probs=219.3
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
+.|.+++|+ +++.++++++.||.+++|++.+++....
T Consensus 10 ~~i~~~~~~--~~~~~l~~~~~~g~i~i~~~~~~~~~~~----------------------------------------- 46 (289)
T cd00200 10 GGVTCVAFS--PDGKLLATGSGDGTIKVWDLETGELLRT----------------------------------------- 46 (289)
T ss_pred CCEEEEEEc--CCCCEEEEeecCcEEEEEEeeCCCcEEE-----------------------------------------
Confidence 889999994 5677999999999999999876542111
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
...|...+..+.|+|+++.++++ .++.|++|+++..+...
T Consensus 47 ------------------------------------~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~--- 87 (289)
T cd00200 47 ------------------------------------LKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVR--- 87 (289)
T ss_pred ------------------------------------EecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceE---
Confidence 13455677899999999999998 89999999998654332
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
.+..|...+.++.|+|++ .++++++.++.+++||+++++.. .. +..|...+.+++|+|
T Consensus 88 -----~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~----~~------------~~~~~~~i~~~~~~~ 145 (289)
T cd00200 88 -----TLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCL----TT------------LRGHTDWVNSVAFSP 145 (289)
T ss_pred -----EEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEE----EE------------eccCCCcEEEEEEcC
Confidence 345677889999999997 78888888999999999866542 22 234557899999999
Q ss_pred CCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 352 NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 352 ~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
+++++++++ ++.|++||++. ++.+..+..|... +.+++|+|+++.+++++.|+.|++||+..+
T Consensus 146 ~~~~l~~~~~~~~i~i~d~~~-~~~~~~~~~~~~~---------------i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~ 209 (289)
T cd00200 146 DGTFVASSSQDGTIKLWDLRT-GKCVATLTGHTGE---------------VNSVAFSPDGEKLLSSSSDGTIKLWDLSTG 209 (289)
T ss_pred cCCEEEEEcCCCcEEEEEccc-cccceeEecCccc---------------cceEEECCCcCEEEEecCCCcEEEEECCCC
Confidence 999999987 69999999986 7777777766543 338999999999999999999999999876
Q ss_pred ceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecC-cE
Q 010256 431 SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASN-SL 509 (514)
Q Consensus 431 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~-~~ 509 (514)
. ....+..|..++..+.++|++.++++++.|+.+++++.... ........|...|.+++|+|++++|++++.+ .+
T Consensus 210 ~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 285 (289)
T cd00200 210 K-CLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG---ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTI 285 (289)
T ss_pred c-eecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc---eeEEEccccCCcEEEEEECCCCCEEEEecCCCeE
Confidence 3 44667788889999999999999999999999999433211 1111222577899999999999999988754 66
Q ss_pred EEE
Q 010256 510 YMY 512 (514)
Q Consensus 510 ~i~ 512 (514)
.+|
T Consensus 286 ~iw 288 (289)
T cd00200 286 RIW 288 (289)
T ss_pred Eec
Confidence 666
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-31 Score=245.80 Aligned_cols=272 Identities=19% Similarity=0.322 Sum_probs=199.8
Q ss_pred ccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcc-----------------------------cccccccc-
Q 010256 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQR-----------------------------RDLEMMDY- 82 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~-----------------------------~~~~~~~~- 82 (514)
.|.+.|.++.||+||+|||+|+.||.|+||.+...+...... ........
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 799999999999999999999999999999987622110000 00000000
Q ss_pred -cccCCc------cceeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeecc
Q 010256 83 -SMSRHP------EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWN 155 (514)
Q Consensus 83 -~~~~~~------~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~ 155 (514)
+....| ..+.+..|.||. +.|.+|.| +.+ .+|++++.|++||+|++...++.++
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt------------~DILDlSW--SKn-~fLLSSSMDKTVRLWh~~~~~CL~~---- 405 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHT------------ADILDLSW--SKN-NFLLSSSMDKTVRLWHPGRKECLKV---- 405 (712)
T ss_pred CccccCCCccccccccchhhhhccc------------hhheeccc--ccC-CeeEeccccccEEeecCCCcceeeE----
Confidence 001111 223445678888 88999999 444 4999999999999999987654432
Q ss_pred CCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccC
Q 010256 156 VHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYH 235 (514)
Q Consensus 156 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~ 235 (514)
..|.+-
T Consensus 406 --------------------------------------------------------------------------F~Hndf 411 (712)
T KOG0283|consen 406 --------------------------------------------------------------------------FSHNDF 411 (712)
T ss_pred --------------------------------------------------------------------------EecCCe
Confidence 357788
Q ss_pred eEEEEECC-CCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcC
Q 010256 236 INSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (514)
Q Consensus 236 v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~ 313 (514)
|+|++|+| |.++|++| -|+.|+||++...+ ... ......-|++++|.|+| +..+.|+.+|.+++|+.+
T Consensus 412 VTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~-Vv~--------W~Dl~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~ 481 (712)
T KOG0283|consen 412 VTCVAFNPVDDRYFISGSLDGKVRLWSISDKK-VVD--------WNDLRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTE 481 (712)
T ss_pred eEEEEecccCCCcEeecccccceEEeecCcCe-eEe--------ehhhhhhheeEEeccCC-ceEEEEEeccEEEEEEcc
Confidence 99999999 68899999 89999999998443 322 23345789999999999 899999999999999998
Q ss_pred CCccccccccceeccCCCCccceeeccccceeEEEEecCC--CEEEEEeCCeEEEEEccCCCCceeeeeecccccccccc
Q 010256 314 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG--RHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCD 391 (514)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g--~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 391 (514)
..+.... +...... .+ -..|. .|+.+.|.|.. +.|++..|..|+|+|.+. ..++..+++......
T Consensus 482 ~lk~~~~----~~I~~~~--~K-k~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~-~~lv~KfKG~~n~~S---- 548 (712)
T KOG0283|consen 482 GLKLVSD----FHIRLHN--KK-KKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRD-KDLVHKFKGFRNTSS---- 548 (712)
T ss_pred CCeEEEe----eeEeecc--Cc-cccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccc-hhhhhhhcccccCCc----
Confidence 8665321 1111100 00 11222 79999999843 488888889999999986 778888887765432
Q ss_pred ccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCC
Q 010256 392 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 392 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 429 (514)
.....|+.||++|+++++|..|+||+...
T Consensus 549 ---------Q~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 549 ---------QISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ---------ceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 12678999999999999999999999743
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-30 Score=216.08 Aligned_cols=336 Identities=12% Similarity=0.085 Sum_probs=249.0
Q ss_pred eeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccc
Q 010256 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (514)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (514)
+.+|..|. +.|.+++.+| +.+++++|+.|..-.+|++.++.....+..+ ..+|.
T Consensus 57 ~~tF~~H~------------~svFavsl~P--~~~l~aTGGgDD~AflW~~~~ge~~~eltgH--------KDSVt---- 110 (399)
T KOG0296|consen 57 LVTFDKHT------------DSVFAVSLHP--NNNLVATGGGDDLAFLWDISTGEFAGELTGH--------KDSVT---- 110 (399)
T ss_pred eeehhhcC------------CceEEEEeCC--CCceEEecCCCceEEEEEccCCcceeEecCC--------CCceE----
Confidence 45688888 8999999976 5569999999999999999999866655555 34454
Q ss_pred cCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-
Q 010256 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA- 251 (514)
Q Consensus 173 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~- 251 (514)
++.|+.+|.+| ++|+-+|.|++|++....+ ...+ ...-..+.-+.|+|.+..|++|
T Consensus 111 ---~~~FshdgtlL------------ATGdmsG~v~v~~~stg~~-------~~~~-~~e~~dieWl~WHp~a~illAG~ 167 (399)
T KOG0296|consen 111 ---CCSFSHDGTLL------------ATGDMSGKVLVFKVSTGGE-------QWKL-DQEVEDIEWLKWHPRAHILLAGS 167 (399)
T ss_pred ---EEEEccCceEE------------EecCCCccEEEEEcccCce-------EEEe-ecccCceEEEEecccccEEEeec
Confidence 88999999999 9999999999999222211 1221 2344678889999999999999
Q ss_pred cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCC
Q 010256 252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (514)
Q Consensus 252 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 331 (514)
.||.+.+|.+.....+ + .+.+|..++++-.|.|+| +.++++..||+|++||+.+++.. ......+
T Consensus 168 ~DGsvWmw~ip~~~~~-k-------v~~Gh~~~ct~G~f~pdG-Kr~~tgy~dgti~~Wn~ktg~p~----~~~~~~e-- 232 (399)
T KOG0296|consen 168 TDGSVWMWQIPSQALC-K-------VMSGHNSPCTCGEFIPDG-KRILTGYDDGTIIVWNPKTGQPL----HKITQAE-- 232 (399)
T ss_pred CCCcEEEEECCCccee-e-------EecCCCCCcccccccCCC-ceEEEEecCceEEEEecCCCcee----EEecccc--
Confidence 9999999999854333 2 578899999999999999 89999999999999999998763 2222111
Q ss_pred CccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCC
Q 010256 332 GTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 410 (514)
Q Consensus 332 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 410 (514)
.....++.++..+..++.|+. +.+++-+..+ ++.+....+... .... ........|-++.|+..=
T Consensus 233 ---------~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~s-gKVv~~~n~~~~-~l~~---~~e~~~esve~~~~ss~l 298 (399)
T KOG0296|consen 233 ---------GLELPCISLNLAGSTLTKGNSEGVACGVNNGS-GKVVNCNNGTVP-ELKP---SQEELDESVESIPSSSKL 298 (399)
T ss_pred ---------cCcCCccccccccceeEeccCCccEEEEcccc-ceEEEecCCCCc-cccc---cchhhhhhhhhccccccc
Confidence 134667778888888888754 7777777665 555544442100 0000 000111112256666677
Q ss_pred CEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceE
Q 010256 411 GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLL 490 (514)
Q Consensus 411 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~ 490 (514)
.+.|+|+-||+|.|||+... .....-.|..+|..+.|.+ ..+|++++.||.|+.. .-+...+...+.+|...|+
T Consensus 299 pL~A~G~vdG~i~iyD~a~~--~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~w---DaRtG~l~~~y~GH~~~Il 372 (399)
T KOG0296|consen 299 PLAACGSVDGTIAIYDLAAS--TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQW---DARTGQLKFTYTGHQMGIL 372 (399)
T ss_pred chhhcccccceEEEEecccc--hhheeccCCCceEEEEEcC-cchheeeccCceEEee---eccccceEEEEecCchhee
Confidence 78899999999999999864 2245556888899999999 7899999999999992 2222234456668999999
Q ss_pred EEEEcCCCCEEEEEe-cCcEEEE
Q 010256 491 HLAWHPSENSIACAA-SNSLYMY 512 (514)
Q Consensus 491 ~~~~spd~~~l~~~~-~~~~~i~ 512 (514)
+++.+|+.+++++++ ++...||
T Consensus 373 ~f~ls~~~~~vvT~s~D~~a~VF 395 (399)
T KOG0296|consen 373 DFALSPQKRLVVTVSDDNTALVF 395 (399)
T ss_pred EEEEcCCCcEEEEecCCCeEEEE
Confidence 999999999999888 4455555
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-31 Score=245.13 Aligned_cols=290 Identities=15% Similarity=0.188 Sum_probs=227.8
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
..|..++|+|+.+ +++++-..|.|++||.+.+.+.
T Consensus 10 sRvKglsFHP~rP--wILtslHsG~IQlWDYRM~tli------------------------------------------- 44 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRP--WILTSLHSGVIQLWDYRMGTLI------------------------------------------- 44 (1202)
T ss_pred ccccceecCCCCC--EEEEeecCceeeeehhhhhhHH-------------------------------------------
Confidence 6789999987665 8999999999999998865421
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
.. +..|.++|+.++|+|++.++++| +|..|++|+..+.+..+
T Consensus 45 ---------------------------------~r-FdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclf--- 87 (1202)
T KOG0292|consen 45 ---------------------------------DR-FDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLF--- 87 (1202)
T ss_pred ---------------------------------hh-hhccCCccceeeecCCCCeEEecCCccEEEEEecccceehh---
Confidence 11 27899999999999999999999 99999999998666554
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
++.+|-+.|+.+.|++.- .+++++|.|.+|+||+..+++++ ..++||...|+|.+|+|
T Consensus 88 -----tL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~~i----------------avltGHnHYVMcAqFhp 145 (1202)
T KOG0292|consen 88 -----TLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRKCI----------------AVLTGHNHYVMCAQFHP 145 (1202)
T ss_pred -----hhccccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCceE----------------EEEecCceEEEeeccCC
Confidence 678999999999999998 79999999999999999998763 44788889999999999
Q ss_pred CCCEEEEEe-CCeEEEEEccC-------CCCceeeeeeccccccccccccc----------cCCccceeeEEEcCCCCEE
Q 010256 352 NGRHILSRD-YMTLKLWDINM-------DSGPVATFQVHEHLRPKLCDLYE----------NDSIFDKFECCLSGDGGRV 413 (514)
Q Consensus 352 ~g~~l~~~~-~~~i~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~v~~~~~s~~~~~l 413 (514)
....+++++ |.+|+|||+.- ++.....+.+++. ..+++. .+.-.+|.-++|+|.-.+|
T Consensus 146 tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~----~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpli 221 (1202)
T KOG0292|consen 146 TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQG----NSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLI 221 (1202)
T ss_pred ccceEEEecccceEEEEeecchhccCCCCCCchhhhhcccc----chhhcCCcCeeeeeeecccccccceEEecCCcceE
Confidence 999999987 59999999862 0100001111110 001110 1112245589999999999
Q ss_pred EEEeCCCcEEEEecCCC-ceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEE
Q 010256 414 ATGSYSNLFRVFGCSEG-SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHL 492 (514)
Q Consensus 414 ~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~ 492 (514)
++|++|..|++|.+... ..+..+..+|...|.++.|+|...+++|.|+|+++|+++ ..+.+-.....--.++...+
T Consensus 222 VSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwD---m~kRt~v~tfrrendRFW~l 298 (1202)
T KOG0292|consen 222 VSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWD---MTKRTSVQTFRRENDRFWIL 298 (1202)
T ss_pred EecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEe---cccccceeeeeccCCeEEEE
Confidence 99999999999998753 355678899999999999999999999999999999932 22211111111135678899
Q ss_pred EEcCCCCEEEEEecCcEEEEe
Q 010256 493 AWHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 493 ~~spd~~~l~~~~~~~~~i~~ 513 (514)
+-+|..+++|+|.++|+.+|-
T Consensus 299 aahP~lNLfAAgHDsGm~VFk 319 (1202)
T KOG0292|consen 299 AAHPELNLFAAGHDSGMIVFK 319 (1202)
T ss_pred EecCCcceeeeecCCceEEEE
Confidence 999999999999999999984
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-32 Score=226.18 Aligned_cols=274 Identities=16% Similarity=0.291 Sum_probs=209.9
Q ss_pred cccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccc
Q 010256 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (514)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (514)
..+.|.|+.+. ...+++|..|++|+|||..+-. ....+.||. +
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~-----------------------c~~~L~GHt------------G 238 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLE-----------------------CLKILTGHT------------G 238 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHH-----------------------HHHhhhcCC------------C
Confidence 56789999986 5579999999999999976544 446788999 9
Q ss_pred ceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCC
Q 010256 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (514)
Q Consensus 114 ~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (514)
.|.|+.|. .+.+++|+.|.+|++||++++++..+.-.+... | +..--....+
T Consensus 239 SVLCLqyd----~rviisGSSDsTvrvWDv~tge~l~tlihHcea--------V---------Lhlrf~ng~m------- 290 (499)
T KOG0281|consen 239 SVLCLQYD----ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEA--------V---------LHLRFSNGYM------- 290 (499)
T ss_pred cEEeeecc----ceEEEecCCCceEEEEeccCCchhhHHhhhcce--------e---------EEEEEeCCEE-------
Confidence 99999993 358999999999999999999877665544221 1 1222233444
Q ss_pred CCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeec
Q 010256 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (514)
Q Consensus 194 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~ 272 (514)
++++.|.++.+|| +... ....+++. +.||...|+.+.|+ .++++++ .|.+|++|++.+.+...
T Consensus 291 -----vtcSkDrsiaVWd-m~sp---s~it~rrV-LvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvR---- 354 (499)
T KOG0281|consen 291 -----VTCSKDRSIAVWD-MASP---TDITLRRV-LVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVR---- 354 (499)
T ss_pred -----EEecCCceeEEEe-ccCc---hHHHHHHH-Hhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeeh----
Confidence 8999999999999 3322 22334444 58999999999986 4599999 99999999998765442
Q ss_pred cCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecC
Q 010256 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (514)
Q Consensus 273 ~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 352 (514)
++.+|...|.|+.+. + +++++|+.|.+|++||+..|.+ ++.+ .||..-|.++.|.
T Consensus 355 ----tl~gHkRGIAClQYr--~-rlvVSGSSDntIRlwdi~~G~c----LRvL------------eGHEeLvRciRFd-- 409 (499)
T KOG0281|consen 355 ----TLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGAC----LRVL------------EGHEELVRCIRFD-- 409 (499)
T ss_pred ----hhhcccccceehhcc--C-eEEEecCCCceEEEEeccccHH----HHHH------------hchHHhhhheeec--
Confidence 678899999998874 4 7999999999999999999987 4444 4555789999996
Q ss_pred CCEEEEEeC-CeEEEEEccCCCCc--------eeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEE
Q 010256 353 GRHILSRDY-MTLKLWDINMDSGP--------VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 423 (514)
Q Consensus 353 g~~l~~~~~-~~i~iwd~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 423 (514)
.+.+++|.. |+|+|||+.....+ +.++..|.+ .|+.+.| |...|++++.|.+|.
T Consensus 410 ~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsg---------------RVFrLQF--D~fqIvsssHddtIL 472 (499)
T KOG0281|consen 410 NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSG---------------RVFRLQF--DEFQIISSSHDDTIL 472 (499)
T ss_pred CceeeeccccceEEEEecccccCCcccccchHHHhhhhccc---------------eeEEEee--cceEEEeccCCCeEE
Confidence 678888865 99999999862221 222333332 2557777 567899999999999
Q ss_pred EEecCCC
Q 010256 424 VFGCSEG 430 (514)
Q Consensus 424 iwd~~~~ 430 (514)
|||...+
T Consensus 473 iWdFl~~ 479 (499)
T KOG0281|consen 473 IWDFLNG 479 (499)
T ss_pred EEEcCCC
Confidence 9999876
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-30 Score=208.09 Aligned_cols=267 Identities=16% Similarity=0.284 Sum_probs=211.9
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
..|.+++| +.+|..|++++.|+++++|++...+....
T Consensus 21 ~~v~Sv~w--n~~g~~lasgs~dktv~v~n~e~~r~~~~----------------------------------------- 57 (313)
T KOG1407|consen 21 QKVHSVAW--NCDGTKLASGSFDKTVSVWNLERDRFRKE----------------------------------------- 57 (313)
T ss_pred hcceEEEE--cccCceeeecccCCceEEEEecchhhhhh-----------------------------------------
Confidence 88999999 78899999999999999999976531100
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC-CCEEEEe-cCCeEEEEeccCCCceeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~ 270 (514)
....+|.+.|-.++|+|. ...|+++ .|.+|++||++.++....+
T Consensus 58 ----------------------------------~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i 103 (313)
T KOG1407|consen 58 ----------------------------------LVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARI 103 (313)
T ss_pred ----------------------------------hcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEe
Confidence 002678888999999875 6677787 8999999999988776544
Q ss_pred eccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEe
Q 010256 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (514)
Q Consensus 271 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 350 (514)
. ....-.-+.|+|+| .+++.++.|..|...|.++.+........ -.+..+.|+
T Consensus 104 ~---------~~~eni~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~~~~~~-----------------~e~ne~~w~ 156 (313)
T KOG1407|consen 104 E---------TKGENINITWSPDG-EYIAVGNKDDRITFIDARTYKIVNEEQFK-----------------FEVNEISWN 156 (313)
T ss_pred e---------ccCcceEEEEcCCC-CEEEEecCcccEEEEEecccceeehhccc-----------------ceeeeeeec
Confidence 1 23334568899999 89999999999999999987653221111 346778888
Q ss_pred cCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCC
Q 010256 351 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 351 ~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 429 (514)
.++.+++... .|.|.|..... -+++.+++.|... -+++.|+|+|+++|+|+.|..+.+||++.
T Consensus 157 ~~nd~Fflt~GlG~v~ILsyps-Lkpv~si~AH~sn---------------CicI~f~p~GryfA~GsADAlvSLWD~~E 220 (313)
T KOG1407|consen 157 NSNDLFFLTNGLGCVEILSYPS-LKPVQSIKAHPSN---------------CICIEFDPDGRYFATGSADALVSLWDVDE 220 (313)
T ss_pred CCCCEEEEecCCceEEEEeccc-cccccccccCCcc---------------eEEEEECCCCceEeeccccceeeccChhH
Confidence 7676666544 49999999986 8999999999743 23899999999999999999999999986
Q ss_pred CceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE---eeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEec
Q 010256 430 GSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR---VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS 506 (514)
Q Consensus 430 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i---~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~ 506 (514)
.-++ ..+..+..+|+.+.|+.+|++||++|+|..|-| -.|.+.+ + +.+.+....+||||...+||-+.+
T Consensus 221 LiC~-R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~--e-----I~~~~~t~tVAWHPk~~LLAyA~d 292 (313)
T KOG1407|consen 221 LICE-RCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVW--E-----IPCEGPTFTVAWHPKRPLLAYACD 292 (313)
T ss_pred hhhh-eeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEE--E-----eeccCCceeEEecCCCceeeEEec
Confidence 6444 678889999999999999999999999999999 2333333 1 235788899999999999997764
Q ss_pred C
Q 010256 507 N 507 (514)
Q Consensus 507 ~ 507 (514)
+
T Consensus 293 d 293 (313)
T KOG1407|consen 293 D 293 (313)
T ss_pred C
Confidence 3
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-30 Score=231.75 Aligned_cols=421 Identities=15% Similarity=0.192 Sum_probs=285.6
Q ss_pred ccccccceEEEEEcCCCC---eEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceee----------eeec
Q 010256 31 EVQEVDIISAIEFDKSGD---HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK----------TEFQ 97 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~---~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~ 97 (514)
..+|.+.|.+++|+.-+. +||+++.|..||||.+.-+......+..... ..+...|.+... ..+.
T Consensus 187 l~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~--t~~~~~~~f~~l~~i~~~is~eall~ 264 (764)
T KOG1063|consen 187 LEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSL--TTLSNLPVFMILEEIQYRISFEALLM 264 (764)
T ss_pred eeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccccccc--ccccCCceeeeeeeEEEEEehhhhhc
Confidence 459999999999998543 8999999999999998655432211111000 000111211111 2245
Q ss_pred cCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCce
Q 010256 98 SHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPK 177 (514)
Q Consensus 98 ~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 177 (514)
||+ +.|+++.| .+.+..|++++.|+++.+|...+..-.-.......... ...+..+ ..
T Consensus 265 GHe------------DWV~sv~W--~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~g-g~a~GF~-------g~ 322 (764)
T KOG1063|consen 265 GHE------------DWVYSVWW--HPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVG-GSAGGFW-------GG 322 (764)
T ss_pred Ccc------------cceEEEEE--ccchhhheecccCcceEEEecCCccceEEEEEEeeccc-cccccee-------eE
Confidence 787 99999999 55667899999999999998776532222222111100 0011222 67
Q ss_pred eeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeE
Q 010256 178 SYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRI 256 (514)
Q Consensus 178 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i 256 (514)
.|+|++..+ ++-+..|..++|. ......- .......||.+.|.+++|+|.|++|++. .|.+-
T Consensus 323 lw~~n~~~i------------i~~g~~Gg~hlWk----t~d~~~w-~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTT 385 (764)
T KOG1063|consen 323 LWSPNSNVI------------IAHGRTGGFHLWK----TKDKTFW-TQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTT 385 (764)
T ss_pred EEcCCCCEE------------EEecccCcEEEEe----ccCccce-eeccccccccccceeeeecCCCCEEEEeccccce
Confidence 899999887 8889999999887 1111111 1222348999999999999999999998 89999
Q ss_pred EEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcc---------c--------c
Q 010256 257 NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL---------C--------D 319 (514)
Q Consensus 257 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~---------~--------~ 319 (514)
|++-.-..+....- +. .-+-|...++|++|-+.. ..|++|.....+|+|+....-. + .
T Consensus 386 RlFa~wg~q~~wHE--ia--RPQiHGyDl~c~~~vn~~-~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~ 460 (764)
T KOG1063|consen 386 RLFARWGRQQEWHE--IA--RPQIHGYDLTCLSFVNED-LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPD 460 (764)
T ss_pred eeecccccccceee--ec--ccccccccceeeehccCC-ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccc
Confidence 99876522222221 11 224478889999999854 6899999999999998653100 0 0
Q ss_pred ---------cccccee--------------c---------cCCC-----------CccceeeccccceeEEEEecCCCEE
Q 010256 320 ---------THSKLFE--------------E---------QEAP-----------GTRSFFTEIIASISDIKFARNGRHI 356 (514)
Q Consensus 320 ---------~~~~~~~--------------~---------~~~~-----------~~~~~~~~~~~~i~~~~~s~~g~~l 356 (514)
.+...+. . .+.| .....+.||...|.+++.+|+|+++
T Consensus 461 gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnli 540 (764)
T KOG1063|consen 461 GANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLI 540 (764)
T ss_pred ccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEE
Confidence 0000000 0 0000 0122456799999999999999999
Q ss_pred EEEe-----C-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 357 LSRD-----Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 357 ~~~~-----~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
|++. . ..|++|+..+ -...+.+.+|.-. |+.++|||||++|++.+.|.++.+|.....
T Consensus 541 ASaCKS~~~ehAvI~lw~t~~-W~~~~~L~~HsLT---------------VT~l~FSpdg~~LLsvsRDRt~sl~~~~~~ 604 (764)
T KOG1063|consen 541 ASACKSSLKEHAVIRLWNTAN-WLQVQELEGHSLT---------------VTRLAFSPDGRYLLSVSRDRTVSLYEVQED 604 (764)
T ss_pred eehhhhCCccceEEEEEeccc-hhhhheecccceE---------------EEEEEECCCCcEEEEeecCceEEeeeeecc
Confidence 9852 2 6899999987 6777788888755 559999999999999999999999998654
Q ss_pred ceee---eeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCC-cccccccceEEEEEcCC-C----CEE
Q 010256 431 SAES---TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANG-NAFDFSMKLLHLAWHPS-E----NSI 501 (514)
Q Consensus 431 ~~~~---~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~-~~~~~~~~v~~~~~spd-~----~~l 501 (514)
.... ..++.|+.-|++..|+|++++++++|.|.+|++..-.......+.. ....+...|+.++|.|- . ..+
T Consensus 605 ~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~v 684 (764)
T KOG1063|consen 605 IKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVV 684 (764)
T ss_pred cchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceE
Confidence 2222 3477999999999999999999999999999993322221111222 45678999999999874 2 256
Q ss_pred EEEecC-cEEEEe
Q 010256 502 ACAASN-SLYMYY 513 (514)
Q Consensus 502 ~~~~~~-~~~i~~ 513 (514)
++|-.. .+++|.
T Consensus 685 avGle~GeI~l~~ 697 (764)
T KOG1063|consen 685 AVGLEKGEIVLWR 697 (764)
T ss_pred EEEecccEEEEEe
Confidence 777754 455553
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.3e-30 Score=205.09 Aligned_cols=276 Identities=13% Similarity=0.218 Sum_probs=218.0
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|...|.+|+|+.+|..||+|+.|+++.+|+++..+.. ......+|.
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~---------------------~~~~~~gh~---------- 64 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR---------------------KELVYRGHT---------- 64 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh---------------------hhhcccCCC----------
Confidence 4578899999999999999999999999999999866432 223456787
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
+.|..++|.|..+ ..|++++.|++|++||++.+++.........+ + .+.|+|+|+++
T Consensus 65 --~svdql~w~~~~~-d~~atas~dk~ir~wd~r~~k~~~~i~~~~en--------i--------~i~wsp~g~~~---- 121 (313)
T KOG1407|consen 65 --DSVDQLCWDPKHP-DLFATASGDKTIRIWDIRSGKCTARIETKGEN--------I--------NITWSPDGEYI---- 121 (313)
T ss_pred --cchhhheeCCCCC-cceEEecCCceEEEEEeccCcEEEEeeccCcc--------e--------EEEEcCCCCEE----
Confidence 8899999987544 58999999999999999999987776665322 2 67899999998
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
+.++.|..|.+.| ......... ......++.++|+.++.+++.. ..|+|.|.....-+..
T Consensus 122 --------~~~~kdD~it~id-~r~~~~~~~--------~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv-- 182 (313)
T KOG1407|consen 122 --------AVGNKDDRITFID-ARTYKIVNE--------EQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPV-- 182 (313)
T ss_pred --------EEecCcccEEEEE-ecccceeeh--------hcccceeeeeeecCCCCEEEEecCCceEEEEeccccccc--
Confidence 9999999999887 322221111 2233567889999888887776 7799999887744443
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
.++..|.....||.|+|+| ++||+|+.|..+.+||+...-+ .+. +..+.-+|+.+.|
T Consensus 183 ------~si~AH~snCicI~f~p~G-ryfA~GsADAlvSLWD~~ELiC----~R~------------isRldwpVRTlSF 239 (313)
T KOG1407|consen 183 ------QSIKAHPSNCICIEFDPDG-RYFATGSADALVSLWDVDELIC----ERC------------ISRLDWPVRTLSF 239 (313)
T ss_pred ------cccccCCcceEEEEECCCC-ceEeeccccceeeccChhHhhh----hee------------eccccCceEEEEe
Confidence 2678899999999999999 9999999999999999976433 222 3334468999999
Q ss_pred ecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCC
Q 010256 350 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 419 (514)
Q Consensus 350 s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 419 (514)
|.||++||+|+. .-|-|=++.+ +..+..++..... +.++|+|...+||-+.+|
T Consensus 240 S~dg~~lASaSEDh~IDIA~vet-Gd~~~eI~~~~~t----------------~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 240 SHDGRMLASASEDHFIDIAEVET-GDRVWEIPCEGPT----------------FTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ccCcceeeccCccceEEeEeccc-CCeEEEeeccCCc----------------eeEEecCCCceeeEEecC
Confidence 999999999875 8999999998 7777777654432 289999999999977655
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4e-29 Score=226.68 Aligned_cols=427 Identities=14% Similarity=0.171 Sum_probs=268.3
Q ss_pred ccccccceEEEEEcCCCC---eEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccc
Q 010256 31 EVQEVDIISAIEFDKSGD---HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~---~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (514)
..+|..+|+|+.|-|+.+ +|++|+.|+.|++|.+...... .+..+++|.
T Consensus 50 l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~---------------------~i~~~~g~~------- 101 (764)
T KOG1063|consen 50 LDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLI---------------------KIYTIQGHC------- 101 (764)
T ss_pred ccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheE---------------------EEEeecCcc-------
Confidence 458999999999999887 8999999999999999744332 455677776
Q ss_pred ccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccc--------cCCccee--cccccCCce
Q 010256 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKA--------AGNGPIF--GSHVSAIPK 177 (514)
Q Consensus 108 ~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~--------~~~~~v~--~~~~~~~~~ 177 (514)
+.++++. .......+.+.|+.+.+||.+..+......+.+..... ...+.+. +..... .+
T Consensus 102 -------~~~~cv~--a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~-~v 171 (764)
T KOG1063|consen 102 -------KECVCVV--ARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKF-VV 171 (764)
T ss_pred -------eeEEEEE--eeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcce-EE
Confidence 4455552 11112333478999999999665522221111110000 0000000 000000 00
Q ss_pred eeccCC--C--ccccc-------------cCCCCCCcccCCCCCCcEEeceeecccccc--------------cccc---
Q 010256 178 SYMANG--G--CGERN-------------FGCASNDSSFPPGGVSSLRLPVVVTSQETN--------------LVAG--- 223 (514)
Q Consensus 178 ~~~~~~--~--~l~~~-------------~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~--------------~~~~--- 223 (514)
..-.++ + .+..+ ....+..++++++.|..||||.+....+.. ....
T Consensus 172 ~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~ 251 (764)
T KOG1063|consen 172 DLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILE 251 (764)
T ss_pred EEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeee
Confidence 000000 0 00000 011134567899999999999964332111 0000
Q ss_pred ------ccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCc
Q 010256 224 ------CRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCN 296 (514)
Q Consensus 224 ------~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~ 296 (514)
.....+.||.+.|+++.|+|.+..|+++ .|.++.+|...+...... ..++...+.+......+..|+|++ +
T Consensus 252 ~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv-~~vRlGe~gg~a~GF~g~lw~~n~-~ 329 (764)
T KOG1063|consen 252 EIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWV-DVVRLGEVGGSAGGFWGGLWSPNS-N 329 (764)
T ss_pred eEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEE-EEEEeecccccccceeeEEEcCCC-C
Confidence 1113346999999999999999888888 999999998874422211 111112233445568899999999 8
Q ss_pred EEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE-eCCeEEEEEcc-----
Q 010256 297 MLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDIN----- 370 (514)
Q Consensus 297 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~iwd~~----- 370 (514)
.+++-+..|..++|........ . +.....||...|++++|+|.|.+|++. .|.+-|+|-.-
T Consensus 330 ~ii~~g~~Gg~hlWkt~d~~~w-------~------~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~ 396 (764)
T KOG1063|consen 330 VIIAHGRTGGFHLWKTKDKTFW-------T------QEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQE 396 (764)
T ss_pred EEEEecccCcEEEEeccCccce-------e------eccccccccccceeeeecCCCCEEEEeccccceeeecccccccc
Confidence 9999999999999983332211 1 123467888999999999999999984 46666765322
Q ss_pred -----C------------------------CCCceeeeeecc--------------------------------------
Q 010256 371 -----M------------------------DSGPVATFQVHE-------------------------------------- 383 (514)
Q Consensus 371 -----~------------------------~~~~~~~~~~~~-------------------------------------- 383 (514)
. +.+.++.+....
T Consensus 397 wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~ 476 (764)
T KOG1063|consen 397 WHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFP 476 (764)
T ss_pred eeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcc
Confidence 0 000011110000
Q ss_pred ---------------ccccc---------------------cccccccCCccceeeEEEcCCCCEEEEEeCCC-----cE
Q 010256 384 ---------------HLRPK---------------------LCDLYENDSIFDKFECCLSGDGGRVATGSYSN-----LF 422 (514)
Q Consensus 384 ---------------~~~~~---------------------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg-----~i 422 (514)
..... +..+| +..++|++++.+|+|+++|+++... .|
T Consensus 477 ~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLY--GHGyEv~~l~~s~~gnliASaCKS~~~ehAvI 554 (764)
T KOG1063|consen 477 GETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLY--GHGYEVYALAISPTGNLIASACKSSLKEHAVI 554 (764)
T ss_pred cccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhc--cCceeEEEEEecCCCCEEeehhhhCCccceEE
Confidence 00000 00011 1235889999999999999987543 58
Q ss_pred EEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCc-ccccccceEEEEEcCCCCEE
Q 010256 423 RVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGN-AFDFSMKLLHLAWHPSENSI 501 (514)
Q Consensus 423 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~-~~~~~~~v~~~~~spd~~~l 501 (514)
++|+..+-. ....+++|.-.|+.++|+||+++|++.|.|+++.++.-.+-...++..+ .-.|..-|.+.+|+||+.++
T Consensus 555 ~lw~t~~W~-~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~F 633 (764)
T KOG1063|consen 555 RLWNTANWL-QVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYF 633 (764)
T ss_pred EEEeccchh-hhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCccccee
Confidence 999988653 3368999999999999999999999999999999943333322233322 23689999999999999999
Q ss_pred EEEe-cCcEEEEe
Q 010256 502 ACAA-SNSLYMYY 513 (514)
Q Consensus 502 ~~~~-~~~~~i~~ 513 (514)
|+++ ++.+.+|.
T Consensus 634 aTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 634 ATASRDKKVKVWE 646 (764)
T ss_pred EEecCCceEEEEe
Confidence 9999 66777774
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=215.59 Aligned_cols=385 Identities=13% Similarity=0.159 Sum_probs=269.9
Q ss_pred ccCcccccccccceEEEEEcCCCCeEEEecCCC--------eEEEEEecCCcccCCcccccccccccccCCccceeeeee
Q 010256 25 ERTAGEEVQEVDIISAIEFDKSGDHLATGDRGG--------RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF 96 (514)
Q Consensus 25 ~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg--------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (514)
++.+..+.+|.+.|.|++.+||.-.+|+|-..| .++|||..+-. .+..+
T Consensus 94 e~~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~-----------------------TL~V~ 150 (626)
T KOG2106|consen 94 ERSQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLS-----------------------TLHVI 150 (626)
T ss_pred hhhcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccce-----------------------eeeee
Confidence 445667889999999999999998999876555 59999965332 22233
Q ss_pred ccCCCccccccccccccceeEEEEeeCCCCcEEEEe--eCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccC
Q 010256 97 QSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLS--TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA 174 (514)
Q Consensus 97 ~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~--~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 174 (514)
...+ ..|.+++|++...|.+++.. +.+..+.+||.+.+......... +..+.
T Consensus 151 g~f~------------~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~s--------ne~v~------ 204 (626)
T KOG2106|consen 151 GFFD------------RGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTS--------NEVVF------ 204 (626)
T ss_pred cccc------------ccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceec--------cceEE------
Confidence 3333 77999999988778777775 66788999999876532211111 12233
Q ss_pred CceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cC
Q 010256 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD 253 (514)
Q Consensus 175 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d 253 (514)
...|.|.+..+ +.....+.+.+|+ .+.....+....|....+..|.|++|.++|..+ +| ++
T Consensus 205 -~a~FHPtd~nl------------iit~Gk~H~~Fw~----~~~~~l~k~~~~fek~ekk~Vl~v~F~engdvi-TgDS~ 266 (626)
T KOG2106|consen 205 -LATFHPTDPNL------------IITCGKGHLYFWT----LRGGSLVKRQGIFEKREKKFVLCVTFLENGDVI-TGDSG 266 (626)
T ss_pred -EEEeccCCCcE------------EEEeCCceEEEEE----ccCCceEEEeeccccccceEEEEEEEcCCCCEE-eecCC
Confidence 66789998887 8888899999998 332222233333333344779999999999765 67 99
Q ss_pred CeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccc-------ccccee
Q 010256 254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT-------HSKLFE 326 (514)
Q Consensus 254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~-------~~~~~~ 326 (514)
|.|.||+..+.+.... ...|.+.|.+++...+| .|++|+.|+.|..||-.-.+.... .+++..
T Consensus 267 G~i~Iw~~~~~~~~k~--------~~aH~ggv~~L~~lr~G--tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~ 336 (626)
T KOG2106|consen 267 GNILIWSKGTNRISKQ--------VHAHDGGVFSLCMLRDG--TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVA 336 (626)
T ss_pred ceEEEEeCCCceEEeE--------eeecCCceEEEEEecCc--cEeecCccceEEeccccccccccccCchhcCCeeEEe
Confidence 9999999975543322 23799999999999998 566699999999999332221100 011110
Q ss_pred -ccC----------------CCCccceeeccccceeEEEEecCCCEEEEE-eCCeEEEEEccCCCCceeeeeeccccccc
Q 010256 327 -EQE----------------APGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPK 388 (514)
Q Consensus 327 -~~~----------------~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~ 388 (514)
++. ...-.....+|......++.+|+...++++ .|+.+++|+ . .+++-+.......
T Consensus 337 e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~--~k~~wt~~~~d~~--- 410 (626)
T KOG2106|consen 337 EGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D--HKLEWTKIIEDPA--- 410 (626)
T ss_pred cCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-C--CceeEEEEecCce---
Confidence 000 001112345688888999999988888875 569999999 3 5555444333322
Q ss_pred cccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE-
Q 010256 389 LCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR- 467 (514)
Q Consensus 389 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i- 467 (514)
.++.|+|.| .+|.|+..|...+.|.++. .. .++....++++.+.++|+|.+||.||.|+.|++
T Consensus 411 -------------~~~~fhpsg-~va~Gt~~G~w~V~d~e~~-~l-v~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy 474 (626)
T KOG2106|consen 411 -------------ECADFHPSG-VVAVGTATGRWFVLDTETQ-DL-VTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIY 474 (626)
T ss_pred -------------eEeeccCcc-eEEEeeccceEEEEecccc-ee-EEEEecCCceEEEEEcCCCCEEEEecCCCeEEEE
Confidence 289999999 9999999999999999974 33 334444899999999999999999999999999
Q ss_pred ---eeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecCcEEEEe
Q 010256 468 ---VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 468 ---~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~i~~ 513 (514)
.+|.++. ..+.. +.+.|++++||+|+++|.+-+.+--++|.
T Consensus 475 ~Vs~~g~~y~---r~~k~--~gs~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 475 RVSANGRKYS---RVGKC--SGSPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred EECCCCcEEE---Eeeee--cCceeEEeeecCCCceEEeccCceEEEEE
Confidence 2232222 12222 23899999999999999988866555553
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-30 Score=205.63 Aligned_cols=280 Identities=18% Similarity=0.245 Sum_probs=216.2
Q ss_pred EEEEEcC-CCCeEEEec-------CCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 39 SAIEFDK-SGDHLATGD-------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 39 ~~~~~s~-~g~~l~tg~-------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
.++.||| -.++||.+. ..|++.|-++.+.+.+ .++. +.+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi-----------------------~e~~----------s~d 58 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGI-----------------------QECQ----------SYD 58 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCe-----------------------EEEE----------eee
Confidence 4789999 334454443 3678888887643322 1111 222
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
.++.+..++|+++.+ ..+++++.||++++||+....
T Consensus 59 ~~D~LfdV~Wse~~e-~~~~~a~GDGSLrl~d~~~~s------------------------------------------- 94 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHE-NQVIAASGDGSLRLFDLTMPS------------------------------------------- 94 (311)
T ss_pred cccceeEeeecCCCc-ceEEEEecCceEEEeccCCCC-------------------------------------------
Confidence 337899999987554 588899999999999953221
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC-CCEEEEe-cCCeEEEEeccCCCcee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSF 268 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~ 268 (514)
.++.. .+.|...|.++.|++. ++.++++ -|++|++|+...++...
T Consensus 95 --------------------------------~Pi~~-~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~ 141 (311)
T KOG0277|consen 95 --------------------------------KPIHK-FKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQ 141 (311)
T ss_pred --------------------------------cchhH-HHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceE
Confidence 01122 2789999999999986 5556666 89999999998665443
Q ss_pred eeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEE
Q 010256 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (514)
Q Consensus 269 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (514)
++.+|...|...+|+|..+++|++++.|+.+++||++.... ...+..|...|.++.
T Consensus 142 --------Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk----------------~~~i~ah~~Eil~cd 197 (311)
T KOG0277|consen 142 --------TFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK----------------FMSIEAHNSEILCCD 197 (311)
T ss_pred --------eecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc----------------eeEEEeccceeEeec
Confidence 67899999999999999889999999999999999986432 122455667899999
Q ss_pred Eec-CCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCC-CEEEEEeCCCcEEEE
Q 010256 349 FAR-NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVF 425 (514)
Q Consensus 349 ~s~-~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iw 425 (514)
|+. +...+++|+ |+.|++||+++-..++..+.+|.-.+. .++|||-. .+||+++.|-+++||
T Consensus 198 w~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVR---------------kvk~Sph~~~lLaSasYDmT~riw 262 (311)
T KOG0277|consen 198 WSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVR---------------KVKFSPHHASLLASASYDMTVRIW 262 (311)
T ss_pred ccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEE---------------EEecCcchhhHhhhccccceEEec
Confidence 998 455666764 599999999987788888888876543 89999964 579999999999999
Q ss_pred ecCCCceeeeeecCCCcceeEEEECC-CCCceeecCCCCeEEE
Q 010256 426 GCSEGSAESTTLEASKNPMRRQVQTP-SRPSRPLGSLSGVVRR 467 (514)
Q Consensus 426 d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~s~d~~v~i 467 (514)
|...+.....+...|++-+..+.|++ +..++|+.+.|..+++
T Consensus 263 ~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~V 305 (311)
T KOG0277|consen 263 DPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYV 305 (311)
T ss_pred ccccchhhhhhhhccceEEeccccccccCceeeecccccceee
Confidence 99876666678889999999999985 5668999999999998
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=228.82 Aligned_cols=453 Identities=14% Similarity=0.100 Sum_probs=291.7
Q ss_pred ccccceEEEEEcCCCCeEEEec--CCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeecc-CCC---ccccc
Q 010256 33 QEVDIISAIEFDKSGDHLATGD--RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQS-HEP---EFDYL 106 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~---~~~~~ 106 (514)
.|..+++|++||++|+|+|+|- ....+++|++.....+.++ ....-...+..|+|..+++..... |+- .++|-
T Consensus 76 ssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEf-vdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr 154 (1080)
T KOG1408|consen 76 SSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEF-VDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWR 154 (1080)
T ss_pred ccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhh-hhccccceeeeecCCCcEEEeeccccceEEEhhhhh
Confidence 4667999999999999999986 5567999999876643221 111112237889999998876543 432 23333
Q ss_pred cc-----cccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccE-EEEEeeccCCC-----ccccCCcceecccccC-
Q 010256 107 KS-----LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHP-----EKAAGNGPIFGSHVSA- 174 (514)
Q Consensus 107 ~~-----~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~-~~~~~~~~~~~-----~~~~~~~~v~~~~~~~- 174 (514)
++ -++...|..++| +++|.|+++++. ..|++|.++.++ .+....+.... ........+.+....+
T Consensus 155 ~N~~~asnkiss~Vsav~f--sEdgSYfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicA 231 (1080)
T KOG1408|consen 155 VNSSGASNKISSVVSAVAF--SEDGSYFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICA 231 (1080)
T ss_pred hcccccccccceeEEEEEE--ccCCceeeeeee-eeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccc
Confidence 32 256788999999 789999988874 799999998765 11111111100 0000000011111100
Q ss_pred -CceeeccCCCccccc-----------------cCCCCCCcccCCCCCCcEEeceeecccccccc--------------c
Q 010256 175 -IPKSYMANGGCGERN-----------------FGCASNDSSFPPGGVSSLRLPVVVTSQETNLV--------------A 222 (514)
Q Consensus 175 -~~~~~~~~~~~l~~~-----------------~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~--------------~ 222 (514)
+..+++..|....+. -.+.+..+++.|+.+|.|++|+ ..+.+-..+ .
T Consensus 232 estfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFn-p~tL~y~~Tlpr~halg~d~a~~~ 310 (1080)
T KOG1408|consen 232 ESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFN-PETLDYAGTLPRSHALGSDTANLS 310 (1080)
T ss_pred cceEEEecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecC-cchhhhccccccccccccchhhcc
Confidence 234445544443322 1345778999999999999998 333321100 0
Q ss_pred ccccccc---ccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEec------
Q 010256 223 GCRRIYA---HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP------ 292 (514)
Q Consensus 223 ~~~~~~~---~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p------ 292 (514)
++.+.+. .+.-...-++.|++....|... .|..+++||++...+.-+. ..+--|...|+++.--|
T Consensus 311 q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~-----~s~lyHS~ciW~Ve~~p~nv~~~ 385 (1080)
T KOG1408|consen 311 QPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKC-----SSMLYHSACIWDVENLPCNVHSP 385 (1080)
T ss_pred cccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccce-----eeeeeccceeeeeccccccccCc
Confidence 0111110 1111234577899999999888 9999999999876544221 23445777777766544
Q ss_pred ------CCCcEEEEEecCCeEEEEEcCCCc---ccccccccee---------------ccCCCC---ccceeecccccee
Q 010256 293 ------THCNMLAYSSSKGSIRLIDMRQSA---LCDTHSKLFE---------------EQEAPG---TRSFFTEIIASIS 345 (514)
Q Consensus 293 ------~~~~~l~~~~~dg~i~~wd~~~~~---~~~~~~~~~~---------------~~~~~~---~~~~~~~~~~~i~ 345 (514)
.+ -|++++.|++||+||+..+. ...+++..-+ ....+. ...........+.
T Consensus 386 ~~aclp~~--cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R 463 (1080)
T KOG1408|consen 386 TAACLPRG--CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFR 463 (1080)
T ss_pred ccccCCcc--ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceE
Confidence 33 58999999999999997632 1111111000 000000 0001112234799
Q ss_pred EEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcC---CCCEEEEEeCCCc
Q 010256 346 DIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG---DGGRVATGSYSNL 421 (514)
Q Consensus 346 ~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~s~~~dg~ 421 (514)
+++.||+|++|++|+. |+++||++.. -+....+..|+.. |.++.|+. ..++||+++.|..
T Consensus 464 ~~~vSp~gqhLAsGDr~GnlrVy~Lq~-l~~~~~~eAHesE---------------ilcLeyS~p~~~~kLLASasrdRl 527 (1080)
T KOG1408|consen 464 ALAVSPDGQHLASGDRGGNLRVYDLQE-LEYTCFMEAHESE---------------ILCLEYSFPVLTNKLLASASRDRL 527 (1080)
T ss_pred EEEECCCcceecccCccCceEEEEehh-hhhhhheecccce---------------eEEEeecCchhhhHhhhhccCCce
Confidence 9999999999999988 9999999996 7777888888765 34777774 3468999999999
Q ss_pred EEEEecCCCceeeeeecCCCcceeEEEECCCC--CceeecCCCCeEEEeeCCCCC-cc-ccCCcccccccceEEEEEcCC
Q 010256 422 FRVFGCSEGSAESTTLEASKNPMRRQVQTPSR--PSRPLGSLSGVVRRVKGADNS-AL-DANGNAFDFSMKLLHLAWHPS 497 (514)
Q Consensus 422 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s~s~d~~v~i~~~~~~~-~~-~~~~~~~~~~~~v~~~~~spd 497 (514)
|+|||+.....+.+++.+|...|+++.|.-.| ..+++++.|+.+.+....+-. .. -......--...++.++..|.
T Consensus 528 IHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~ 607 (1080)
T KOG1408|consen 528 IHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPT 607 (1080)
T ss_pred EEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCC
Confidence 99999987767779999999999999998776 678999999988881111000 00 011111123568899999999
Q ss_pred CCEEEEEe-cCcEEEEe
Q 010256 498 ENSIACAA-SNSLYMYY 513 (514)
Q Consensus 498 ~~~l~~~~-~~~~~i~~ 513 (514)
.+++++++ +.++.||.
T Consensus 608 ~k~v~t~cQDrnirif~ 624 (1080)
T KOG1408|consen 608 SKLVVTVCQDRNIRIFD 624 (1080)
T ss_pred cceEEEEecccceEEEe
Confidence 99999888 77888885
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-29 Score=229.13 Aligned_cols=395 Identities=15% Similarity=0.176 Sum_probs=284.8
Q ss_pred cccccccchhhccccCcccccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccce
Q 010256 12 AQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR 91 (514)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (514)
+....|+++.- +..-+...+.+.|+++.=+|-=+.+|.|..+|+|.|+|+..++.
T Consensus 182 G~lql~Nvrt~---K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dki---------------------- 236 (910)
T KOG1539|consen 182 GRLQLWNVRTG---KVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKI---------------------- 236 (910)
T ss_pred CcEEEEEeccC---cEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcE----------------------
Confidence 34555666552 12223346679999999999888999999999999999988774
Q ss_pred eeeeeccCCCccccccccccccceeEEEEeeCCCCcE-EEEeeCCCeEEEEEcCccEEEEEee-ccCCCccccCCcceec
Q 010256 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSAL-YLLSTNDKTIKLWKVQEKKVKKVFD-WNVHPEKAAGNGPIFG 169 (514)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~-l~s~~~d~~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~~v~~ 169 (514)
+.+|+... +.|+++.| ..||.. +++++..|.+.+||++..+...... .+ .+.+.
T Consensus 237 -l~sFk~d~------------g~VtslSF--rtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah--------~~sv~- 292 (910)
T KOG1539|consen 237 -LMSFKQDW------------GRVTSLSF--RTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAH--------YGSVT- 292 (910)
T ss_pred -EEEEEccc------------cceeEEEe--ccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccc--------cCCcc-
Confidence 34555433 78999999 566665 4556777999999999987665543 22 12222
Q ss_pred ccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEEC-CCCCEE
Q 010256 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNN-SDGETF 248 (514)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l 248 (514)
...|.|....+ ++.+.|+.+++|- ....+.. .+..+ +..||..+..++.|. .++..+
T Consensus 293 ------~~~fl~~epVl------------~ta~~DnSlk~~v-fD~~dg~--pR~LR-~R~GHs~Pp~~irfy~~~g~~i 350 (910)
T KOG1539|consen 293 ------GATFLPGEPVL------------VTAGADNSLKVWV-FDSGDGV--PRLLR-SRGGHSAPPSCIRFYGSQGHFI 350 (910)
T ss_pred ------cceecCCCceE------------eeccCCCceeEEE-eeCCCCc--chhee-eccCCCCCchheeeeccCcEEE
Confidence 55666666666 8999999999887 3333322 11222 237899998899887 567777
Q ss_pred EEe-cCCeEEEEeccCCCc-----------------------------------------------------eeeeec--
Q 010256 249 ISA-DDLRINLWNLEISNQ-----------------------------------------------------SFNIVD-- 272 (514)
Q Consensus 249 ~s~-~d~~i~iwd~~~~~~-----------------------------------------------------~~~~~~-- 272 (514)
.++ .|++.+.+++....+ ....++
T Consensus 351 lsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~ 430 (910)
T KOG1539|consen 351 LSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFR 430 (910)
T ss_pred EecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEecc
Confidence 777 777777666532100 000000
Q ss_pred --------cCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccce
Q 010256 273 --------VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (514)
Q Consensus 273 --------~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 344 (514)
++|..+......+++++.++.| ++.+.|+..|.|-+|++.+|-.. ..|-. -..|.++|
T Consensus 431 n~~~G~~~L~~~~~~~~~~~~~av~vs~CG-NF~~IG~S~G~Id~fNmQSGi~r----~sf~~---------~~ah~~~V 496 (910)
T KOG1539|consen 431 NKTSGRHVLDPKRFKKDDINATAVCVSFCG-NFVFIGYSKGTIDRFNMQSGIHR----KSFGD---------SPAHKGEV 496 (910)
T ss_pred CcccccEEecCccccccCcceEEEEEeccC-ceEEEeccCCeEEEEEcccCeee----ccccc---------CccccCce
Confidence 1122223344678999999999 99999999999999999988652 22210 14577899
Q ss_pred eEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEE
Q 010256 345 SDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 423 (514)
Q Consensus 345 ~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 423 (514)
++++...-++.+++++ +|-+.+||... ..++..+...... ..+..+....+++.+.+|-.|+
T Consensus 497 ~gla~D~~n~~~vsa~~~Gilkfw~f~~-k~l~~~l~l~~~~----------------~~iv~hr~s~l~a~~~ddf~I~ 559 (910)
T KOG1539|consen 497 TGLAVDGTNRLLVSAGADGILKFWDFKK-KVLKKSLRLGSSI----------------TGIVYHRVSDLLAIALDDFSIR 559 (910)
T ss_pred eEEEecCCCceEEEccCcceEEEEecCC-cceeeeeccCCCc----------------ceeeeeehhhhhhhhcCceeEE
Confidence 9999999888899865 59999999996 6666666544332 2677777888899999999999
Q ss_pred EEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEE
Q 010256 424 VFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIAC 503 (514)
Q Consensus 424 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~ 503 (514)
++|+.+. +....+.+|...++++.|||||++|++++.|++||+ |.+.. ....+.+......+++.|||+|.+||+
T Consensus 560 vvD~~t~-kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~---wDlpt-~~lID~~~vd~~~~sls~SPngD~LAT 634 (910)
T KOG1539|consen 560 VVDVVTR-KVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRT---WDLPT-GTLIDGLLVDSPCTSLSFSPNGDFLAT 634 (910)
T ss_pred EEEchhh-hhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEE---EeccC-cceeeeEecCCcceeeEECCCCCEEEE
Confidence 9999876 556889999999999999999999999999999999 32221 011122335788899999999999998
Q ss_pred Ee--cCcEEEEe
Q 010256 504 AA--SNSLYMYY 513 (514)
Q Consensus 504 ~~--~~~~~i~~ 513 (514)
+. .+++++|.
T Consensus 635 ~Hvd~~gIylWs 646 (910)
T KOG1539|consen 635 VHVDQNGIYLWS 646 (910)
T ss_pred EEecCceEEEEE
Confidence 87 47999995
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-28 Score=230.68 Aligned_cols=301 Identities=15% Similarity=0.178 Sum_probs=208.2
Q ss_pred cchhhccccCcccccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeec
Q 010256 18 KFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ 97 (514)
Q Consensus 18 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (514)
+|.++||+....+ .|-..|+....++|+..+++++.+.....|+...+... ..+...+. .+. ....+.
T Consensus 5 k~rh~~g~~~k~~--~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v----~~~~~~G~----~~~--~~~~l~ 72 (493)
T PTZ00421 5 RFRHTQGVPARPD--RHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAV----LKHTDYGK----LAS--NPPILL 72 (493)
T ss_pred cccccccccCCcc--cceeccccccccCCCCCcEeECCceEEEEEecCCceEE----eecccccc----CCC--CCceEe
Confidence 4666777654422 34567788888889888888888888888987554321 00110000 000 012367
Q ss_pred cCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCce
Q 010256 98 SHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPK 177 (514)
Q Consensus 98 ~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 177 (514)
+|. +.|++++|+|. ++.+|++++.|++|++||+.++......
T Consensus 73 GH~------------~~V~~v~fsP~-d~~~LaSgS~DgtIkIWdi~~~~~~~~~------------------------- 114 (493)
T PTZ00421 73 GQE------------GPIIDVAFNPF-DPQKLFTASEDGTIMGWGIPEEGLTQNI------------------------- 114 (493)
T ss_pred CCC------------CCEEEEEEcCC-CCCEEEEEeCCCEEEEEecCCCcccccc-------------------------
Confidence 887 88999999652 5569999999999999999764311000
Q ss_pred eeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCC-CEEEEe-cCCe
Q 010256 178 SYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLR 255 (514)
Q Consensus 178 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~ 255 (514)
..+... +.+|...|.+++|+|++ ++|+++ .|++
T Consensus 115 --------------------------------------------~~~l~~-L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 115 --------------------------------------------SDPIVH-LQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred --------------------------------------------CcceEE-ecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 000111 36899999999999985 688888 8999
Q ss_pred EEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccc
Q 010256 256 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRS 335 (514)
Q Consensus 256 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 335 (514)
|++||++++.... .+.+|...|.+++|+|++ .+|++++.|+.|++||+++++.. ..+.
T Consensus 150 VrIWDl~tg~~~~--------~l~~h~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~v----~tl~--------- 207 (493)
T PTZ00421 150 VNVWDVERGKAVE--------VIKCHSDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTIV----SSVE--------- 207 (493)
T ss_pred EEEEECCCCeEEE--------EEcCCCCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcEE----EEEe---------
Confidence 9999998665432 456788999999999999 89999999999999999987652 2333
Q ss_pred eeeccccc-eeEEEEecCCCEEEEEe-----CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCC
Q 010256 336 FFTEIIAS-ISDIKFARNGRHILSRD-----YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (514)
Q Consensus 336 ~~~~~~~~-i~~~~~s~~g~~l~~~~-----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 409 (514)
+|.+. ...+.|.+++..+++++ ++.|++||++....++.....+... .+....|+++
T Consensus 208 ---~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~--------------~~~~~~~d~d 270 (493)
T PTZ00421 208 ---AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSS--------------ALFIPFFDED 270 (493)
T ss_pred ---cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCC--------------ceEEEEEcCC
Confidence 33332 45678888877777632 4899999998644455444333211 1225678999
Q ss_pred CCEEEEEe-CCCcEEEEecCCCceeeeeecCCCcceeEEEECCC
Q 010256 410 GGRVATGS-YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS 452 (514)
Q Consensus 410 ~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 452 (514)
+++|++++ .|+.|++||+.++......-..+..++..+++.|.
T Consensus 271 ~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 271 TNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred CCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 99999887 59999999999875433222234567788888775
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=218.98 Aligned_cols=290 Identities=20% Similarity=0.265 Sum_probs=223.0
Q ss_pred chhhccccCcccccccccceEEEEEcCCC-CeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeec
Q 010256 19 FSQVFGERTAGEEVQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ 97 (514)
Q Consensus 19 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~g-~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (514)
+-++|..+.....-+|.+.|.|++=+|.. ..+|+|+.||.|+|||+.... ....++
T Consensus 50 leR~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~-----------------------~~~~f~ 106 (433)
T KOG0268|consen 50 LERVFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE-----------------------CIRTFK 106 (433)
T ss_pred HHHHhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhh-----------------------hhheee
Confidence 44455555555567999999999999987 789999999999999998655 346788
Q ss_pred cCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCce
Q 010256 98 SHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPK 177 (514)
Q Consensus 98 ~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 177 (514)
.|+ +.|..|++. . ..+++++.|++|+.|.+... ......
T Consensus 107 AH~------------G~V~Gi~v~--~--~~~~tvgdDKtvK~wk~~~~-p~~til------------------------ 145 (433)
T KOG0268|consen 107 AHE------------GLVRGICVT--Q--TSFFTVGDDKTVKQWKIDGP-PLHTIL------------------------ 145 (433)
T ss_pred ccc------------CceeeEEec--c--cceEEecCCcceeeeeccCC-cceeee------------------------
Confidence 998 889999994 3 47999999999999988652 110000
Q ss_pred eeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEE
Q 010256 178 SYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRIN 257 (514)
Q Consensus 178 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~ 257 (514)
-...+..+.-+..+..++++. ..|.
T Consensus 146 ------------------------------------------------------g~s~~~gIdh~~~~~~FaTcG-e~i~ 170 (433)
T KOG0268|consen 146 ------------------------------------------------------GKSVYLGIDHHRKNSVFATCG-EQID 170 (433)
T ss_pred ------------------------------------------------------ccccccccccccccccccccC-ceee
Confidence 002233444444566667662 2588
Q ss_pred EEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCcccee
Q 010256 258 LWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFF 337 (514)
Q Consensus 258 iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (514)
|||.+...+.. .+......|.++.|+|....+|++|..|+.|.|||++++....+.+..
T Consensus 171 IWD~~R~~Pv~--------smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~------------- 229 (433)
T KOG0268|consen 171 IWDEQRDNPVS--------SMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT------------- 229 (433)
T ss_pred ecccccCCccc--------eeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee-------------
Confidence 99997554432 455567889999999998788999999999999999998875332222
Q ss_pred eccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEE
Q 010256 338 TEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 416 (514)
Q Consensus 338 ~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 416 (514)
..-+.++|+|.+-.+++|+ |..++.||++.-..++....+|... |++++|||.|+-+++|
T Consensus 230 ----mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsA---------------V~dVdfsptG~Efvsg 290 (433)
T KOG0268|consen 230 ----MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSA---------------VMDVDFSPTGQEFVSG 290 (433)
T ss_pred ----ccccceecCccccceeeccccccceehhhhhhcccchhhccccee---------------EEEeccCCCcchhccc
Confidence 2457799999777777775 4999999999767778877777654 5699999999999999
Q ss_pred eCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 417 SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 417 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
|.|.+|+||.+..+.........-...|.++.|+.|.+|+++||.|+.||+
T Consensus 291 syDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRl 341 (433)
T KOG0268|consen 291 SYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRL 341 (433)
T ss_pred cccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceee
Confidence 999999999998775443333344567899999999999999999999999
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=216.54 Aligned_cols=235 Identities=16% Similarity=0.216 Sum_probs=185.2
Q ss_pred cccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010256 229 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 307 (514)
Q Consensus 229 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i 307 (514)
+.||++.|.|+.|. .+.|++| +|.+|++||+++++... ++-+|-..|..+.|+. .++++++.|.++
T Consensus 233 L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~--------tlihHceaVLhlrf~n---g~mvtcSkDrsi 299 (499)
T KOG0281|consen 233 LTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN--------TLIHHCEAVLHLRFSN---GYMVTCSKDRSI 299 (499)
T ss_pred hhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh--------HHhhhcceeEEEEEeC---CEEEEecCCcee
Confidence 48999999999885 4589999 99999999999877653 5677899999999985 489999999999
Q ss_pred EEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccc
Q 010256 308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLR 386 (514)
Q Consensus 308 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~ 386 (514)
.+||+...... ..+..+.||...|+.+.|+ .+++++++ |.+|++|++.+ .+.+.++.+|...+
T Consensus 300 aVWdm~sps~i-------------t~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st-~efvRtl~gHkRGI 363 (499)
T KOG0281|consen 300 AVWDMASPTDI-------------TLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTST-CEFVRTLNGHKRGI 363 (499)
T ss_pred EEEeccCchHH-------------HHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccc-eeeehhhhcccccc
Confidence 99999775421 1134567888999999997 56999875 59999999998 99999999998653
Q ss_pred cccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEE
Q 010256 387 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVR 466 (514)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~ 466 (514)
. ++. -.|+++++|+.|.+|++||++.|.++ ..++||.+-|+.+.| +.+.+++|+-||+|+
T Consensus 364 A---------------ClQ--Yr~rlvVSGSSDntIRlwdi~~G~cL-RvLeGHEeLvRciRF--d~krIVSGaYDGkik 423 (499)
T KOG0281|consen 364 A---------------CLQ--YRDRLVVSGSSDNTIRLWDIECGACL-RVLEGHEELVRCIRF--DNKRIVSGAYDGKIK 423 (499)
T ss_pred e---------------ehh--ccCeEEEecCCCceEEEEeccccHHH-HHHhchHHhhhheee--cCceeeeccccceEE
Confidence 2 333 37899999999999999999998655 799999999999998 567899999999999
Q ss_pred Ee---eCCCCCc--ccc-CCcccccccceEEEEEcCCCCEEEEEecCcEEEEe
Q 010256 467 RV---KGADNSA--LDA-NGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 467 i~---~~~~~~~--~~~-~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~i~~ 513 (514)
+. .+-.+.. .++ .....+|++.|..+.|. +-..+++..++.+.||+
T Consensus 424 vWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD-~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 424 VWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD-EFQIISSSHDDTILIWD 475 (499)
T ss_pred EEecccccCCcccccchHHHhhhhccceeEEEeec-ceEEEeccCCCeEEEEE
Confidence 92 1222210 011 12234789999999984 23334455589999996
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=215.63 Aligned_cols=282 Identities=13% Similarity=0.162 Sum_probs=213.4
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
+.+.|.-+.| +++|++||+++.|.+..+|.+.....
T Consensus 223 htdEVWfl~F--S~nGkyLAsaSkD~Taiiw~v~~d~~------------------------------------------ 258 (519)
T KOG0293|consen 223 HTDEVWFLQF--SHNGKYLASASKDSTAIIWIVVYDVH------------------------------------------ 258 (519)
T ss_pred CCCcEEEEEE--cCCCeeEeeccCCceEEEEEEecCcc------------------------------------------
Confidence 3488999999 78899999999999999998754321
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
+++. . .+.+|..+|..+.|+||.++|+++ .|..+.+||+.++.....
T Consensus 259 ----------------~kl~---------------~-tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~ 306 (519)
T KOG0293|consen 259 ----------------FKLK---------------K-TLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHL 306 (519)
T ss_pred ----------------eeee---------------e-eeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhh
Confidence 1110 1 137899999999999999999998 788899999998765432
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
. -.++...+.+++|.||| ..+++|+.|+.+..||+.... ...|++... ..|.++++
T Consensus 307 y-------~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~-----~~~W~gvr~-----------~~v~dlai 362 (519)
T KOG0293|consen 307 Y-------PSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNI-----LGNWEGVRD-----------PKVHDLAI 362 (519)
T ss_pred c-------ccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCCcch-----hhccccccc-----------ceeEEEEE
Confidence 1 12256789999999999 899999999999999997644 344554432 36999999
Q ss_pred ecCCCEEEE-EeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecC
Q 010256 350 ARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 350 s~~g~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 428 (514)
++||+++++ +.|..|++++... ......+..+.. +++++.|.|++++.+.=.+..+++||++
T Consensus 363 t~Dgk~vl~v~~d~~i~l~~~e~-~~dr~lise~~~----------------its~~iS~d~k~~LvnL~~qei~LWDl~ 425 (519)
T KOG0293|consen 363 TYDGKYVLLVTVDKKIRLYNREA-RVDRGLISEEQP----------------ITSFSISKDGKLALVNLQDQEIHLWDLE 425 (519)
T ss_pred cCCCcEEEEEecccceeeechhh-hhhhccccccCc----------------eeEEEEcCCCcEEEEEcccCeeEEeecc
Confidence 999999887 5679999999885 443333333332 4589999999999998899999999999
Q ss_pred CCceeeeeecCCCcc--eeEEEEC-CCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCC-EEEEE
Q 010256 429 EGSAESTTLEASKNP--MRRQVQT-PSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN-SIACA 504 (514)
Q Consensus 429 ~~~~~~~~~~~~~~~--v~~~~~~-~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~-~l~~~ 504 (514)
.. .+...+.||+.. +-.-+|- .+..++|+||+|+.|+| |......+.....+|...|++++|+|... ++|+|
T Consensus 426 e~-~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyI---Whr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASa 501 (519)
T KOG0293|consen 426 EN-KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYI---WHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASA 501 (519)
T ss_pred hh-hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEE---EEccCCceeEeecCCcceeeEEecCCCCHHHhhcc
Confidence 54 555778888755 3334554 56689999999999999 22221223334556999999999999765 57777
Q ss_pred e-cCcEEEEe
Q 010256 505 A-SNSLYMYY 513 (514)
Q Consensus 505 ~-~~~~~i~~ 513 (514)
+ ++.+.||.
T Consensus 502 sDDgtIRIWg 511 (519)
T KOG0293|consen 502 SDDGTIRIWG 511 (519)
T ss_pred CCCCeEEEec
Confidence 6 56677874
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=201.42 Aligned_cols=280 Identities=18% Similarity=0.242 Sum_probs=213.4
Q ss_pred ccccceEEEEEcC-CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccc
Q 010256 33 QEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (514)
Q Consensus 33 ~h~~~V~~~~~s~-~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (514)
+..+.|.+|+||| ...+|+.|+.||+||+|+++..... .-+....|+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~---------------------~~ka~~~~~----------- 72 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL---------------------VPKAQQSHD----------- 72 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcc---------------------cchhhhccC-----------
Confidence 4568999999999 5567779999999999999864211 012334555
Q ss_pred ccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
++|.+++| +.+|..+++|+.|+.+++||+.+++...+
T Consensus 73 -~PvL~v~W--sddgskVf~g~~Dk~~k~wDL~S~Q~~~v---------------------------------------- 109 (347)
T KOG0647|consen 73 -GPVLDVCW--SDDGSKVFSGGCDKQAKLWDLASGQVSQV---------------------------------------- 109 (347)
T ss_pred -CCeEEEEE--ccCCceEEeeccCCceEEEEccCCCeeee----------------------------------------
Confidence 89999999 78899999999999999999998864322
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCC--CEEEEe-cCCeEEEEeccCCCcee
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG--ETFISA-DDLRINLWNLEISNQSF 268 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~-~d~~i~iwd~~~~~~~~ 268 (514)
..|..+|..+.|-+.. ..|++| .|++|++||++...+..
T Consensus 110 --------------------------------------~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~ 151 (347)
T KOG0647|consen 110 --------------------------------------AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVA 151 (347)
T ss_pred --------------------------------------eecccceeEEEEecCCCcceeEecccccceeecccCCCCeee
Confidence 4677888888886654 489999 89999999999665553
Q ss_pred eeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEE
Q 010256 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (514)
Q Consensus 269 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (514)
.+ ...+.++++..-. .+++.+..++.|.+|+++++.... +..+.| .+-.+++++
T Consensus 152 t~---------~LPeRvYa~Dv~~---pm~vVata~r~i~vynL~n~~te~------k~~~Sp--------Lk~Q~R~va 205 (347)
T KOG0647|consen 152 TL---------QLPERVYAADVLY---PMAVVATAERHIAVYNLENPPTEF------KRIESP--------LKWQTRCVA 205 (347)
T ss_pred ee---------eccceeeehhccC---ceeEEEecCCcEEEEEcCCCcchh------hhhcCc--------ccceeeEEE
Confidence 32 1356677766532 578889999999999998765431 111111 123589999
Q ss_pred EecCCCEEEEEeC-CeEEEEEccCCC--CceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEE
Q 010256 349 FARNGRHILSRDY-MTLKLWDINMDS--GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 425 (514)
Q Consensus 349 ~s~~g~~l~~~~~-~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 425 (514)
..+|.+..+.|+- |++.|..++. . +.-.+++.|..... . ++.++.|.+++|+|.-..|+|++.||++.+|
T Consensus 206 ~f~d~~~~alGsiEGrv~iq~id~-~~~~~nFtFkCHR~~~~-~-----~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FW 278 (347)
T KOG0647|consen 206 CFQDKDGFALGSIEGRVAIQYIDD-PNPKDNFTFKCHRSTNS-V-----NDDVYAVNSIAFHPVHGTLVTAGSDGTFSFW 278 (347)
T ss_pred EEecCCceEeeeecceEEEEecCC-CCccCceeEEEeccCCC-C-----CCceEEecceEeecccceEEEecCCceEEEe
Confidence 9998887788764 9999999886 4 44556777764322 1 1356778899999999999999999999999
Q ss_pred ecCCCceeeeeecCCCcceeEEEECCCCCceeec
Q 010256 426 GCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG 459 (514)
Q Consensus 426 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 459 (514)
|-....+ +++.+.|..+|++..|+.+|.++|-+
T Consensus 279 Dkdar~k-Lk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 279 DKDARTK-LKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred cchhhhh-hhccCcCCCccceeEecCCCCEEEEE
Confidence 9886543 47788999999999999999988765
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-30 Score=219.20 Aligned_cols=283 Identities=18% Similarity=0.253 Sum_probs=222.1
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
.-.|...|..+.|-++...|++|+.|..|++|++...+.. ...++.|..
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~---------------------~~~tLaGs~---------- 219 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSE---------------------LISTLAGSL---------- 219 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccchhh---------------------hhhhhhccC----------
Confidence 3478899999999999899999999999999998766521 334566655
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
+.|+++.| .+++.++++++.|+.+++|++...+...
T Consensus 220 --g~it~~d~--d~~~~~~iAas~d~~~r~Wnvd~~r~~~---------------------------------------- 255 (459)
T KOG0288|consen 220 --GNITSIDF--DSDNKHVIAASNDKNLRLWNVDSLRLRH---------------------------------------- 255 (459)
T ss_pred --CCcceeee--cCCCceEEeecCCCceeeeeccchhhhh----------------------------------------
Confidence 78999999 7788899999999999999998764211
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
+ +.+|++.|+++.|......+++| .|.+|++||+........
T Consensus 256 ------------------------------------T-LsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt 298 (459)
T KOG0288|consen 256 ------------------------------------T-LSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKT 298 (459)
T ss_pred ------------------------------------h-hcccccceeeehhhccccceeeccccchhhhhhhhhhheecc
Confidence 1 47899999999998887778899 999999999985433221
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
+ + ....+..|+.++ ..+++|..|+.|++||.++... .+..+.. +.|+++..
T Consensus 299 ~-------l--~~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~~----~~sv~~g-------------g~vtSl~l 349 (459)
T KOG0288|consen 299 V-------L--PGSQCNDIVCSI---SDVISGHFDKKVRFWDIRSADK----TRSVPLG-------------GRVTSLDL 349 (459)
T ss_pred c-------c--ccccccceEecc---eeeeecccccceEEEeccCCce----eeEeecC-------------cceeeEee
Confidence 1 1 234456666653 5789999999999999998775 2333332 58999999
Q ss_pred ecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecC
Q 010256 350 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 350 s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 428 (514)
+++|..|.+.+ |.++.+.|+++ .....++...... +-.+.+.+.|||++.|+++||.||.|+||++.
T Consensus 350 s~~g~~lLsssRDdtl~viDlRt-~eI~~~~sA~g~k-----------~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~ 417 (459)
T KOG0288|consen 350 SMDGLELLSSSRDDTLKVIDLRT-KEIRQTFSAEGFK-----------CASDWTRVVFSPDGSYVAAGSADGSVYIWSVF 417 (459)
T ss_pred ccCCeEEeeecCCCceeeeeccc-ccEEEEeeccccc-----------cccccceeEECCCCceeeeccCCCcEEEEEcc
Confidence 99999888865 58999999997 5555555443321 11124479999999999999999999999999
Q ss_pred CCceeeeeecCCCc--ceeEEEECCCCCceeecCCCCeEEE
Q 010256 429 EGSAESTTLEASKN--PMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 429 ~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+++.. ..+..... .|.++.|+|.|.+|++++.++.+.+
T Consensus 418 tgKlE-~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~l 457 (459)
T KOG0288|consen 418 TGKLE-KVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTL 457 (459)
T ss_pred CceEE-EEeccCCCCcceEEEEEcCCCchhhcccCCcceEe
Confidence 88544 55555444 4999999999999999999998877
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-29 Score=237.70 Aligned_cols=314 Identities=16% Similarity=0.231 Sum_probs=231.7
Q ss_pred ccceEEEEEcCCCCeEEEec--CCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccc
Q 010256 35 VDIISAIEFDKSGDHLATGD--RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (514)
...|.+++.+|||..+|||+ .||.++||+.+.--. ........ -.+.+.+...|.
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~------~~~~~~~~-----l~k~l~~m~~h~------------ 69 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD------EKEEKNEN-----LPKHLCTMDDHD------------ 69 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccc------hhhhhhcc-----cchhheeecccc------------
Confidence 45699999999999999999 899999999653210 00000000 112344556676
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
+.|+|++| ++||++||+|++|+.|.+|.....- .+.++
T Consensus 70 ~sv~CVR~--S~dG~~lAsGSDD~~v~iW~~~~~~----------------~~~~f------------------------ 107 (942)
T KOG0973|consen 70 GSVNCVRF--SPDGSYLASGSDDRLVMIWERAEIG----------------SGTVF------------------------ 107 (942)
T ss_pred CceeEEEE--CCCCCeEeeccCcceEEEeeecccC----------------Ccccc------------------------
Confidence 89999999 7899999999999999999876410 00110
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
-+++....+.-|. +... +.+|...|.+++|+|++.+|+++ -|++|.+|+..+.+. .+
T Consensus 108 ------gs~g~~~~vE~wk------------~~~~-l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~-~~-- 165 (942)
T KOG0973|consen 108 ------GSTGGAKNVESWK------------VVSI-LRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFEL-LK-- 165 (942)
T ss_pred ------cccccccccceee------------EEEE-EecCCCccceeccCCCccEEEEecccceEEEEcccccee-ee--
Confidence 1111122223233 2233 37899999999999999999999 899999999987733 32
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
.+.+|...|-.+.|.|-| ++|++-+.|++|++|++.+..........|+.. .-...+..+.|||
T Consensus 166 -----vl~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~----------~~~T~f~RlSWSP 229 (942)
T KOG0973|consen 166 -----VLRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSITKPFEES----------PLTTFFLRLSWSP 229 (942)
T ss_pred -----eeecccccccceEECCcc-CeeeeecCCceEEEEEcccceeeEeeccchhhC----------CCcceeeecccCC
Confidence 578899999999999999 999999999999999977644422212222211 1124578899999
Q ss_pred CCCEEEEEe-----CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCC-------------CC--
Q 010256 352 NGRHILSRD-----YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD-------------GG-- 411 (514)
Q Consensus 352 ~g~~l~~~~-----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-------------~~-- 411 (514)
||++|++.. ..++.|.+-.+ -+.-..+.+|.... ..+.|+|. .+
T Consensus 230 DG~~las~nA~n~~~~~~~IieR~t-Wk~~~~LvGH~~p~---------------evvrFnP~lfe~~~~ng~~~~~~~~ 293 (942)
T KOG0973|consen 230 DGHHLASPNAVNGGKSTIAIIERGT-WKVDKDLVGHSAPV---------------EVVRFNPKLFERNNKNGTSTQPNCY 293 (942)
T ss_pred CcCeecchhhccCCcceeEEEecCC-ceeeeeeecCCCce---------------EEEEeChHHhccccccCCccCCCcc
Confidence 999999842 26888888765 66677888888753 37777762 11
Q ss_pred --EEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 412 --RVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 412 --~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.+|+|+.|++|.||.....+++....+-...+|..+.|+|||..|..+|.||+|.+
T Consensus 294 y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~ 351 (942)
T KOG0973|consen 294 YCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVAL 351 (942)
T ss_pred eEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEE
Confidence 57899999999999987665655555666789999999999999999999999998
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=210.76 Aligned_cols=281 Identities=17% Similarity=0.259 Sum_probs=229.2
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccc
Q 010256 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (514)
...|+++...|..+.++||+.|..+.++|...++ .+..+.||. ..
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q-----------------------~l~~~~Gh~------------kk 263 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQ-----------------------ILATLKGHT------------KK 263 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhh-----------------------hhhhccCcc------------eE
Confidence 4678889998887899999999999999986655 557899998 88
Q ss_pred eeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCC
Q 010256 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (514)
Q Consensus 115 v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (514)
|+.+.|+|. ...+++++.|..|++|........
T Consensus 264 i~~v~~~~~--~~~v~~aSad~~i~vws~~~~s~~--------------------------------------------- 296 (506)
T KOG0289|consen 264 ITSVKFHKD--LDTVITASADEIIRVWSVPLSSEP--------------------------------------------- 296 (506)
T ss_pred EEEEEeccc--hhheeecCCcceEEeeccccccCc---------------------------------------------
Confidence 999999654 448899999999999987643210
Q ss_pred CCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeecc
Q 010256 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 273 (514)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~ 273 (514)
.....|..+|+.+..+|.|.||+++ +|++..+.|++++......
T Consensus 297 --------------------------------~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~v--- 341 (506)
T KOG0289|consen 297 --------------------------------TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVV--- 341 (506)
T ss_pred --------------------------------cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEE---
Confidence 0126788999999999999999999 9999999999977765443
Q ss_pred CCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCC
Q 010256 274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (514)
Q Consensus 274 ~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 353 (514)
.-+...-.+++.+|+||| .+|.+|..|+.+++||+..+... ..|.+|.++|..++|+.+|
T Consensus 342 ---s~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~~----------------a~Fpght~~vk~i~FsENG 401 (506)
T KOG0289|consen 342 ---SDETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTNV----------------AKFPGHTGPVKAISFSENG 401 (506)
T ss_pred ---eeccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCcccc----------------ccCCCCCCceeEEEeccCc
Confidence 112234558999999999 99999999999999999887642 2367788999999999999
Q ss_pred CEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCce
Q 010256 354 RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (514)
Q Consensus 354 ~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 432 (514)
-+|+++.+ +.|++||++. .+..+++...+.. ++.+++|.+.|.+|+.++.|=.|++++-.+..+
T Consensus 402 Y~Lat~add~~V~lwDLRK-l~n~kt~~l~~~~--------------~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W 466 (506)
T KOG0289|consen 402 YWLATAADDGSVKLWDLRK-LKNFKTIQLDEKK--------------EVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSW 466 (506)
T ss_pred eEEEEEecCCeEEEEEehh-hcccceeeccccc--------------cceeEEEcCCCCeEEeecceeEEEEEecccccc
Confidence 99999755 8899999997 6777777655431 134899999999999998888888887655444
Q ss_pred e-eeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 433 E-STTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 433 ~-~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
. ...+..|.+..+.+.|....++++++|.|..+++
T Consensus 467 ~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 467 TEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRL 502 (506)
T ss_pred eeeehhhhcccccceeeecccceEEeeccchhheEE
Confidence 3 3667778888899999999999999999999887
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-28 Score=204.44 Aligned_cols=258 Identities=17% Similarity=0.207 Sum_probs=190.1
Q ss_pred ccCccCeEEEEECC---CCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCC
Q 010256 230 HAHDYHINSISNNS---DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG 305 (514)
Q Consensus 230 ~~h~~~v~~~~~~~---~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg 305 (514)
.+|.++|.+++|.- ....|+++ .|.++++|.++.+....... ....+|...|-++...+++ ..+++|+.|.
T Consensus 141 ~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~----~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~ 215 (423)
T KOG0313|consen 141 VGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKAL----KVCRGHKRSVDSVSVDSSG-TRFCSGSWDT 215 (423)
T ss_pred ecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHH----hHhcccccceeEEEecCCC-CeEEeecccc
Confidence 67888888777643 23458888 99999999998665443321 1235899999999999999 8999999999
Q ss_pred eEEEEEcCCCcc--ccc-------cccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCc
Q 010256 306 SIRLIDMRQSAL--CDT-------HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGP 375 (514)
Q Consensus 306 ~i~~wd~~~~~~--~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~ 375 (514)
.|++|+..+... ... ..+.-+......+...+.+|..+|.++.|++ ...+++++ |.+|+.||+.+ +..
T Consensus 216 ~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDlet-g~~ 293 (423)
T KOG0313|consen 216 MLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLET-GGL 293 (423)
T ss_pred eeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeec-ccc
Confidence 999999332110 000 0001111112234567889999999999998 45666654 69999999998 777
Q ss_pred eeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCce--eeeeecCCCcceeEEEECCCC
Q 010256 376 VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA--ESTTLEASKNPMRRQVQTPSR 453 (514)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~ 453 (514)
..++...... +++..+|..++|++|+.|..+++||.+++.- ..+.+.+|...|.++.++|..
T Consensus 294 ~~~~~~~ksl----------------~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~ 357 (423)
T KOG0313|consen 294 KSTLTTNKSL----------------NCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTN 357 (423)
T ss_pred eeeeecCcce----------------eEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCC
Confidence 7777665432 3899999999999999999999999987643 348889999999999999976
Q ss_pred C-ceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 454 P-SRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 454 ~-~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
. .++++|.|+++++.+-.... ....+...|...|.++.|+. +.+|++|+ ++.++||.
T Consensus 358 ~~~~~S~S~D~t~klWDvRS~k--~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 358 EFQLVSGSYDNTVKLWDVRSTK--APLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFK 416 (423)
T ss_pred ceEEEEEecCCeEEEEEeccCC--CcceeeccCCceEEEEeccC-CceEEeccCcceEEEec
Confidence 6 57999999999993222221 11223446899999999965 45566555 88888885
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-28 Score=212.68 Aligned_cols=279 Identities=16% Similarity=0.272 Sum_probs=218.2
Q ss_pred ccccceEEEEEcCCCC-eEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccc
Q 010256 33 QEVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~-~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (514)
...+.|++++|||... -+|+.+ .-.+.||+..+.... .++.-..
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~-----------------------k~~srFk----------- 68 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVR-----------------------KTFSRFK----------- 68 (487)
T ss_pred cccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhh-----------------------hhHHhhc-----------
Confidence 4458999999999544 355544 336999998765432 2222222
Q ss_pred ccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
..|.++.| ..||++|++|...|.|+++|..+..
T Consensus 69 -~~v~s~~f--R~DG~LlaaGD~sG~V~vfD~k~r~-------------------------------------------- 101 (487)
T KOG0310|consen 69 -DVVYSVDF--RSDGRLLAAGDESGHVKVFDMKSRV-------------------------------------------- 101 (487)
T ss_pred -cceeEEEe--ecCCeEEEccCCcCcEEEeccccHH--------------------------------------------
Confidence 77999999 6789999999999999999955421
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCC-EEEEe-cCCeEEEEeccCCCceee
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
..+. +.+|..+|..+.|+|+++ .|++| +|+.+++||+.+... .
T Consensus 102 --------------------------------iLR~-~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v--~ 146 (487)
T KOG0310|consen 102 --------------------------------ILRQ-LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV--Q 146 (487)
T ss_pred --------------------------------HHHH-HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE--E
Confidence 0111 378999999999999754 56667 899999999986553 2
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
. .+.+|.+.|++.+|+|..+.++++|+.||.|++||++..... +..+ .|..+|.++.+
T Consensus 147 ~------~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~---v~el-------------nhg~pVe~vl~ 204 (487)
T KOG0310|consen 147 A------ELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSR---VVEL-------------NHGCPVESVLA 204 (487)
T ss_pred E------EecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCce---eEEe-------------cCCCceeeEEE
Confidence 1 578899999999999987689999999999999999986311 2222 25578999999
Q ss_pred ecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCC
Q 010256 350 ARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 350 s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 429 (514)
-|.|..+++++...|+|||+...++.+..+..|... |+|+++..++..|++|+-|+.|++||+.+
T Consensus 205 lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~Kt---------------VTcL~l~s~~~rLlS~sLD~~VKVfd~t~ 269 (487)
T KOG0310|consen 205 LPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKT---------------VTCLRLASDSTRLLSGSLDRHVKVFDTTN 269 (487)
T ss_pred cCCCCEEEEcCCCeEEEEEecCCceehhhhhcccce---------------EEEEEeecCCceEeecccccceEEEEccc
Confidence 999999999988899999999756666666656544 56999999999999999999999999665
Q ss_pred CceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 430 GSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 430 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
- +....+ ...++|-+++.+|++..++.|-.||.+-+
T Consensus 270 ~-Kvv~s~-~~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 270 Y-KVVHSW-KYPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred e-EEEEee-ecccceeeEEecCCCceEEEecccceeee
Confidence 4 322222 45688999999999999999999999988
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-28 Score=208.58 Aligned_cols=297 Identities=14% Similarity=0.231 Sum_probs=224.2
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcc-cc--cccccccccCCccceeeeee-ccCCCccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQR-RD--LEMMDYSMSRHPEFRYKTEF-QSHEPEFDYL 106 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~ 106 (514)
...|.-+|.||+++|++++.++++.+|+|.-|++.+++...... +. +..+..++ ..- ++|.
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~---------k~~r~~h~------ 202 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPL---------KESRKGHV------ 202 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCC---------Cccccccc------
Confidence 35799999999999999999999999999999999888542111 10 11111111 001 2454
Q ss_pred cccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcc
Q 010256 107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (514)
Q Consensus 107 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 186 (514)
..|.+++. ++||++|++|+.|..|.||+.++.+....
T Consensus 203 ------keil~~av--S~Dgkylatgg~d~~v~Iw~~~t~ehv~~----------------------------------- 239 (479)
T KOG0299|consen 203 ------KEILTLAV--SSDGKYLATGGRDRHVQIWDCDTLEHVKV----------------------------------- 239 (479)
T ss_pred ------ceeEEEEE--cCCCcEEEecCCCceEEEecCcccchhhc-----------------------------------
Confidence 77999999 78999999999999999999988652211
Q ss_pred ccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCC
Q 010256 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN 265 (514)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~ 265 (514)
+.+|.+.|.+++|-.....|.++ .|++|++|+++...
T Consensus 240 ------------------------------------------~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s 277 (479)
T KOG0299|consen 240 ------------------------------------------FKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS 277 (479)
T ss_pred ------------------------------------------ccccccceeeeeeecCccceeeeecCCceEEEehhHhH
Confidence 37899999999998877777777 99999999998433
Q ss_pred ceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecccccee
Q 010256 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (514)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 345 (514)
.. .++.+|++.|.+|....-+ +.+-+|+.|+++++|++.... +-++.+|.+.+.
T Consensus 278 ~v--------etlyGHqd~v~~IdaL~re-R~vtVGgrDrT~rlwKi~ees-----------------qlifrg~~~sid 331 (479)
T KOG0299|consen 278 YV--------ETLYGHQDGVLGIDALSRE-RCVTVGGRDRTVRLWKIPEES-----------------QLIFRGGEGSID 331 (479)
T ss_pred HH--------HHHhCCccceeeechhccc-ceEEeccccceeEEEeccccc-----------------eeeeeCCCCCee
Confidence 22 2678999999999988877 677777899999999995432 123556668899
Q ss_pred EEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEE
Q 010256 346 DIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 424 (514)
Q Consensus 346 ~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 424 (514)
+++|-.+ ..+++|++ |.|.+|++.. .+++.+.....+..+....+..+ +.|++++..|...++|+|+.+|.|++
T Consensus 332 cv~~In~-~HfvsGSdnG~IaLWs~~K-Kkplf~~~~AHgv~~~~~~~~~~---~Witsla~i~~sdL~asGS~~G~vrL 406 (479)
T KOG0299|consen 332 CVAFIND-EHFVSGSDNGSIALWSLLK-KKPLFTSRLAHGVIPELDPVNGN---FWITSLAVIPGSDLLASGSWSGCVRL 406 (479)
T ss_pred eEEEecc-cceeeccCCceEEEeeecc-cCceeEeeccccccCCccccccc---cceeeeEecccCceEEecCCCCceEE
Confidence 9999854 56777766 9999999997 88888776655544332222211 35779999999999999999999999
Q ss_pred EecCCCceee---eeecCCCcceeEEEECCCCCceeec
Q 010256 425 FGCSEGSAES---TTLEASKNPMRRQVQTPSRPSRPLG 459 (514)
Q Consensus 425 wd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~s~ 459 (514)
|.+..+-... ..+. -.+.|++++|+++|+.|++|
T Consensus 407 W~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 407 WKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred EEecCCccccceeeecc-cccEEEEEEEccCCCEEEEe
Confidence 9999873322 2222 46789999999999977666
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-29 Score=198.80 Aligned_cols=245 Identities=20% Similarity=0.336 Sum_probs=194.9
Q ss_pred ccccceEEEEEcCC-CCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccc
Q 010256 33 QEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (514)
Q Consensus 33 ~h~~~V~~~~~s~~-g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (514)
.-.+.+..++|+++ .+.+++++.||+++|||+.... ..+..++.|+
T Consensus 58 d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s----------------------~Pi~~~kEH~----------- 104 (311)
T KOG0277|consen 58 DTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS----------------------KPIHKFKEHK----------- 104 (311)
T ss_pred ecccceeEeeecCCCcceEEEEecCceEEEeccCCCC----------------------cchhHHHhhh-----------
Confidence 34678999999995 4678888999999999953221 2556788888
Q ss_pred ccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
..|.++.|++ .++..+++++-|++||+|+...++...
T Consensus 105 -~EV~Svdwn~-~~r~~~ltsSWD~TiKLW~~~r~~Sv~----------------------------------------- 141 (311)
T KOG0277|consen 105 -REVYSVDWNT-VRRRIFLTSSWDGTIKLWDPNRPNSVQ----------------------------------------- 141 (311)
T ss_pred -hheEEecccc-ccceeEEeeccCCceEeecCCCCcceE-----------------------------------------
Confidence 7799999985 445678888999999999976543211
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC-CCEEEEe-cCCeEEEEeccCCCceee
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
+ ..+|...|...+|+|. .+.++++ .|+++++||++..+...
T Consensus 142 -----------------------------------T-f~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~- 184 (311)
T KOG0277|consen 142 -----------------------------------T-FNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFM- 184 (311)
T ss_pred -----------------------------------e-ecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCcee-
Confidence 1 2678899999999996 7788888 89999999999776543
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
.++.|...|.++.|+.-..+++++|+.|+.|+.||+++-+.. ...+.+|.-.|+.++|
T Consensus 185 -------~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p---------------l~eL~gh~~AVRkvk~ 242 (311)
T KOG0277|consen 185 -------SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP---------------LFELNGHGLAVRKVKF 242 (311)
T ss_pred -------EEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcccc---------------ceeecCCceEEEEEec
Confidence 356688999999999877799999999999999999986532 2235667789999999
Q ss_pred ecCC-CEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcC-CCCEEEEEeCCCcEEEEe
Q 010256 350 ARNG-RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRVFG 426 (514)
Q Consensus 350 s~~g-~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd 426 (514)
||.. .+|++++. .+++|||...+...+.+...|.+.+ ..+.||+ ++.++|+.+.|..++||+
T Consensus 243 Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv---------------~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 243 SPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFV---------------CGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred CcchhhHhhhccccceEEecccccchhhhhhhhccceEE---------------eccccccccCceeeecccccceeeec
Confidence 9965 46667775 9999999987566777888787763 2677876 667899999999999998
Q ss_pred c
Q 010256 427 C 427 (514)
Q Consensus 427 ~ 427 (514)
.
T Consensus 308 p 308 (311)
T KOG0277|consen 308 P 308 (311)
T ss_pred c
Confidence 4
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.4e-26 Score=198.59 Aligned_cols=390 Identities=12% Similarity=0.174 Sum_probs=275.0
Q ss_pred cccccchhhccccCcccccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceee
Q 010256 14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK 93 (514)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (514)
..+|+..+- ....+-..-.+.|....|+|.+.-|+.....|.+..|++.++... +..
T Consensus 182 lSVWdWqk~---~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~--------------------k~~ 238 (626)
T KOG2106|consen 182 LSVWDWQKK---AKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLV--------------------KRQ 238 (626)
T ss_pred cchhhchhh---hccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceE--------------------EEe
Confidence 346777662 122223344578889999996655555556788999998876642 122
Q ss_pred eeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceeccccc
Q 010256 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS 173 (514)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 173 (514)
..|+.++ ..-|.|++|. ++| -+++|..+|.|.||+..+.+..+....+ .+.|+
T Consensus 239 ~~fek~e-----------kk~Vl~v~F~--eng-dviTgDS~G~i~Iw~~~~~~~~k~~~aH--------~ggv~----- 291 (626)
T KOG2106|consen 239 GIFEKRE-----------KKFVLCVTFL--ENG-DVITGDSGGNILIWSKGTNRISKQVHAH--------DGGVF----- 291 (626)
T ss_pred ecccccc-----------ceEEEEEEEc--CCC-CEEeecCCceEEEEeCCCceEEeEeeec--------CCceE-----
Confidence 3355554 2559999995 444 4889999999999999887766554433 46677
Q ss_pred CCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccc----cccccc----------------cc---------
Q 010256 174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQ----ETNLVA----------------GC--------- 224 (514)
Q Consensus 174 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~----~~~~~~----------------~~--------- 224 (514)
+++...+|.. ++|+.|..|..||-.... +..... ..
T Consensus 292 --~L~~lr~Gtl-------------lSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~ 356 (626)
T KOG2106|consen 292 --SLCMLRDGTL-------------LSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTL 356 (626)
T ss_pred --EEEEecCccE-------------eecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeee
Confidence 7888888887 559999999998821111 000000 00
Q ss_pred ---cccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEE
Q 010256 225 ---RRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY 300 (514)
Q Consensus 225 ---~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~ 300 (514)
......+|....+.++.+|+.+.++++ .|+.+++|+ + .+..... ....++.++.|+|.| .++.
T Consensus 357 ~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~-~k~~wt~---------~~~d~~~~~~fhpsg--~va~ 423 (626)
T KOG2106|consen 357 ENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D-HKLEWTK---------IIEDPAECADFHPSG--VVAV 423 (626)
T ss_pred cCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-C-CceeEEE---------EecCceeEeeccCcc--eEEE
Confidence 011125788888999999999999998 999999999 2 3433322 136778999999998 8999
Q ss_pred EecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeee
Q 010256 301 SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATF 379 (514)
Q Consensus 301 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~ 379 (514)
|+..|...+.|.++...+. .. .. ..+++.++|+|+|.+||.|+. +.|+||.+...+......
T Consensus 424 Gt~~G~w~V~d~e~~~lv~-----~~-----------~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~ 486 (626)
T KOG2106|consen 424 GTATGRWFVLDTETQDLVT-----IH-----------TD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRV 486 (626)
T ss_pred eeccceEEEEecccceeEE-----EE-----------ec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEe
Confidence 9999999999998855421 11 11 368999999999999999975 999999998766665555
Q ss_pred eeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee------------------cCCC
Q 010256 380 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTL------------------EASK 441 (514)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------------------~~~~ 441 (514)
..+.+ . .|+.+.||+|+++|.+-+.|-.|..|..... +..... ..+.
T Consensus 487 ~k~~g-s-------------~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~-~~~ts~kDvkW~t~~c~lGF~v~g~s~~ 551 (626)
T KOG2106|consen 487 GKCSG-S-------------PITHLDWSSDSQFLVSNSGDYEILYWKPSEC-KQITSVKDVKWATYTCTLGFEVFGGSDG 551 (626)
T ss_pred eeecC-c-------------eeEEeeecCCCceEEeccCceEEEEEccccC-cccceecceeeeeeEEEEEEEEecccCC
Confidence 44443 1 1558999999999999999999999954322 111111 1355
Q ss_pred cceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEE-EEecCcEEEEe
Q 010256 442 NPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIA-CAASNSLYMYY 513 (514)
Q Consensus 442 ~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~-~~~~~~~~i~~ 513 (514)
..+..++-+.+++++|+|.+.|.|++.+-.-............|++.|++++|..+...|. ++.+.+++.|.
T Consensus 552 t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 552 TDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWR 624 (626)
T ss_pred chHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEE
Confidence 6677788889999999999999999943332222233344557999999999988777666 55578888885
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-27 Score=189.53 Aligned_cols=276 Identities=19% Similarity=0.277 Sum_probs=222.9
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
++|..++| +.+|+|.++++.|++|++|+...+.+.+.
T Consensus 18 gaV~avry--N~dGnY~ltcGsdrtvrLWNp~rg~likt----------------------------------------- 54 (307)
T KOG0316|consen 18 GAVRAVRY--NVDGNYCLTCGSDRTVRLWNPLRGALIKT----------------------------------------- 54 (307)
T ss_pred cceEEEEE--ccCCCEEEEcCCCceEEeecccccceeee-----------------------------------------
Confidence 89999999 78899999999999999999887754332
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
+ .+|...|.+++.+.|+..|++| .|..+.+||+++++...
T Consensus 55 -----------------------------------Y-sghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R--- 95 (307)
T KOG0316|consen 55 -----------------------------------Y-SGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDR--- 95 (307)
T ss_pred -----------------------------------e-cCCCceeeeccccccccccccCCCCceEEEEEcccCeeee---
Confidence 2 5677889999999999999999 99999999999887664
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
.+.+|.+.|+.++|+.+. ..+++|+.|..+++||-++... ++++.++. -...|.++..+
T Consensus 96 -----r~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~--ePiQilde------------a~D~V~Si~v~- 154 (307)
T KOG0316|consen 96 -----RFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSF--EPIQILDE------------AKDGVSSIDVA- 154 (307)
T ss_pred -----ecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCC--Cccchhhh------------hcCceeEEEec-
Confidence 578999999999999988 8999999999999999988653 22444433 33679988886
Q ss_pred CCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 352 NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 352 ~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
+..|++|+ ||+++.||++. ++....+.+|. |++++|++|++....++-|+.+++.|-++|
T Consensus 155 -~heIvaGS~DGtvRtydiR~-G~l~sDy~g~p-----------------it~vs~s~d~nc~La~~l~stlrLlDk~tG 215 (307)
T KOG0316|consen 155 -EHEIVAGSVDGTVRTYDIRK-GTLSSDYFGHP-----------------ITSVSFSKDGNCSLASSLDSTLRLLDKETG 215 (307)
T ss_pred -ccEEEeeccCCcEEEEEeec-ceeehhhcCCc-----------------ceeEEecCCCCEEEEeeccceeeecccchh
Confidence 66788876 59999999997 77666665554 449999999999999999999999999998
Q ss_pred ceeeeeecCCCcceeE--EEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccc-eEEEEEcCCCCEEEEEecC
Q 010256 431 SAESTTLEASKNPMRR--QVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMK-LLHLAWHPSENSIACAASN 507 (514)
Q Consensus 431 ~~~~~~~~~~~~~v~~--~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~-v~~~~~spd~~~l~~~~~~ 507 (514)
++++.+++|.+.-+. .+++.....+++||+||.|.+ |.+....+.....-+... |.+++++|.-.-+.++...
T Consensus 216 -klL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~---wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~ 291 (307)
T KOG0316|consen 216 -KLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYF---WDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGH 291 (307)
T ss_pred -HHHHHhcccccceeeeeeeecccceeEEeccCCceEEE---EEeccceeeeeeccCCceeEEeeecccCccceeEecCC
Confidence 556889999876554 456677889999999999999 322221122122223344 7999999999999999999
Q ss_pred cEEEEeC
Q 010256 508 SLYMYYA 514 (514)
Q Consensus 508 ~~~i~~~ 514 (514)
+.+.|++
T Consensus 292 ~~~~~~~ 298 (307)
T KOG0316|consen 292 GDLFWYQ 298 (307)
T ss_pred ceeceee
Confidence 8888864
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-27 Score=215.48 Aligned_cols=364 Identities=15% Similarity=0.186 Sum_probs=239.3
Q ss_pred EEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEE
Q 010256 39 SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 118 (514)
Q Consensus 39 ~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i 118 (514)
-++.|++..+.|.+...|..++|||+.+-...+.+- .+-.|. ..|..+
T Consensus 328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~--------------------s~lyHS------------~ciW~V 375 (1080)
T KOG1408|consen 328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCS--------------------SMLYHS------------ACIWDV 375 (1080)
T ss_pred eEEEecCCCceEEEEEcCceEEEEecccccccccee--------------------eeeecc------------ceeeee
Confidence 467899999999999999999999998766543321 222343 344444
Q ss_pred EEee----------CCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccc
Q 010256 119 RWCQ----------SANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (514)
Q Consensus 119 ~~~~----------~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (514)
.-.| -+. ..|.+++.|++||+|++..+.-..+..-+.-. .....+.+..+...+
T Consensus 376 e~~p~nv~~~~~aclp~-~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils-------------~~l~ki~y~d~~~q~-- 439 (1080)
T KOG1408|consen 376 ENLPCNVHSPTAACLPR-GCFTTCSSDGTIRLWDLAFCTNNQVYRRNILS-------------ANLSKIPYEDSTQQI-- 439 (1080)
T ss_pred ccccccccCcccccCCc-cceeEecCCCcEEEeecccccccceeecccch-------------hhhhcCccccCchhh--
Confidence 4333 122 35899999999999999864221111111000 000011111111111
Q ss_pred ccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCce
Q 010256 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (514)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 267 (514)
+ .|...-++| +.... .......+++++.+|+|++|++| ..|++++|++...+..
T Consensus 440 ----------~---~d~~~~~fd-----------ka~~s-~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~ 494 (1080)
T KOG1408|consen 440 ----------M---HDASAGIFD-----------KALVS-TCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYT 494 (1080)
T ss_pred ----------h---hhccCCccc-----------ccchh-hcCcccceEEEEECCCcceecccCccCceEEEEehhhhhh
Confidence 0 000011111 00000 13344679999999999999999 8999999999855443
Q ss_pred eeeeccCCCcccccCCceEEEEEecC--CCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecccccee
Q 010256 268 FNIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~~v~~~p~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 345 (514)
. .++.|...|.++.|+.- +.++|++++.|+-|++||....... ...+.+|...|+
T Consensus 495 ~--------~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l---------------~qtld~HSssIT 551 (1080)
T KOG1408|consen 495 C--------FMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDL---------------VQTLDGHSSSIT 551 (1080)
T ss_pred h--------heecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccch---------------hhhhccccccee
Confidence 2 46789999999999842 2368999999999999998664432 234667889999
Q ss_pred EEEEecCC--CEEEE-EeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcE
Q 010256 346 DIKFARNG--RHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 422 (514)
Q Consensus 346 ~~~~s~~g--~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 422 (514)
++.|-..| ..+++ |.|.. ..|+..........+..|.....+ .. ++.++..|..+++++++.|..|
T Consensus 552 svKFa~~gln~~MiscGADks-imFr~~qk~~~g~~f~r~t~t~~k-------tT---lYDm~Vdp~~k~v~t~cQDrni 620 (1080)
T KOG1408|consen 552 SVKFACNGLNRKMISCGADKS-IMFRVNQKASSGRLFPRHTQTLSK-------TT---LYDMAVDPTSKLVVTVCQDRNI 620 (1080)
T ss_pred EEEEeecCCceEEEeccCchh-hheehhccccCceecccccccccc-------ce---EEEeeeCCCcceEEEEecccce
Confidence 99999877 45555 55543 344443212222333333332211 11 3489999999999999999999
Q ss_pred EEEecCCCceeeeeecC---CCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCC
Q 010256 423 RVFGCSEGSAESTTLEA---SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN 499 (514)
Q Consensus 423 ~iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~ 499 (514)
+||++++++. .+.+++ |.+..-.+...|.|.|||+...|+++.+++-- ..+.....++|...|+.+.|.+|-+
T Consensus 621 rif~i~sgKq-~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~---sgEcvA~m~GHsE~VTG~kF~nDCk 696 (1080)
T KOG1408|consen 621 RIFDIESGKQ-VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFV---SGECVAQMTGHSEAVTGVKFLNDCK 696 (1080)
T ss_pred EEEeccccce-eeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEec---cchhhhhhcCcchheeeeeecccch
Confidence 9999999854 466664 44556678889999999999999999992211 1123345567999999999999999
Q ss_pred EEEE-EecCcEEEEe
Q 010256 500 SIAC-AASNSLYMYY 513 (514)
Q Consensus 500 ~l~~-~~~~~~~i~~ 513 (514)
.|++ ++++.+|||.
T Consensus 697 HlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 697 HLISVSGDGCIFVWK 711 (1080)
T ss_pred hheeecCCceEEEEE
Confidence 8884 5588899996
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.9e-28 Score=210.67 Aligned_cols=300 Identities=15% Similarity=0.212 Sum_probs=210.3
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
..|.++++ .+.|..|++|+.|.+|++||+..-....
T Consensus 168 k~Vsal~~--Dp~GaR~~sGs~Dy~v~~wDf~gMdas~------------------------------------------ 203 (641)
T KOG0772|consen 168 KIVSALAV--DPSGARFVSGSLDYTVKFWDFQGMDASM------------------------------------------ 203 (641)
T ss_pred eEEEEeee--cCCCceeeeccccceEEEEecccccccc------------------------------------------
Confidence 77999999 6788899999999999999987532100
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
+ ..+.+.......|+++.|++.|..|++. .....+++|-. +....+..
T Consensus 204 ---------------~---------------~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRd-G~~~~e~~ 252 (641)
T KOG0772|consen 204 ---------------R---------------SFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRD-GFEIVEFS 252 (641)
T ss_pred ---------------h---------------hhhccCcccccccceeeecCCCCeEEEEecCcceeEEccC-Cceeeeee
Confidence 0 0011113334568899999998888877 78889999876 43333332
Q ss_pred ccC-----CCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeE
Q 010256 272 DVK-----PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (514)
Q Consensus 272 ~~~-----~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 346 (514)
... .....+|...+++.+|+|.....|++++.||++|+||+...+.. .++++... ..+..-+++.
T Consensus 253 KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q---~qVik~k~-------~~g~Rv~~ts 322 (641)
T KOG0772|consen 253 KGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ---LQVIKTKP-------AGGKRVPVTS 322 (641)
T ss_pred ccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh---eeEEeecc-------CCCcccCcee
Confidence 111 12457899999999999998889999999999999999876543 33333322 1223357899
Q ss_pred EEEecCCCEEEEE-eCCeEEEEEccCCC-Cc-eeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEE
Q 010256 347 IKFARNGRHILSR-DYMTLKLWDINMDS-GP-VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 423 (514)
Q Consensus 347 ~~~s~~g~~l~~~-~~~~i~iwd~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 423 (514)
++|+|+|++||+| .||.|.+|+..... .+ ...-..|.. -.+|++++||+||++|++-+.|++++
T Consensus 323 C~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~-------------g~~Itsi~FS~dg~~LlSRg~D~tLK 389 (641)
T KOG0772|consen 323 CAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLP-------------GQDITSISFSYDGNYLLSRGFDDTLK 389 (641)
T ss_pred eecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCC-------------CCceeEEEeccccchhhhccCCCcee
Confidence 9999999999987 56999999976411 11 122233332 12366999999999999999999999
Q ss_pred EEecCCCceeeeeecCC--CcceeEEEECCCCCceeecCC------CCeEEEeeCCCCCccccCCcccccccceEEEEEc
Q 010256 424 VFGCSEGSAESTTLEAS--KNPMRRQVQTPSRPSRPLGSL------SGVVRRVKGADNSALDANGNAFDFSMKLLHLAWH 495 (514)
Q Consensus 424 iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~s~------d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s 495 (514)
+||+...++.+.+..+- ..+-+.++|+|+.++|++|+. .+++.+++...+. ......-....|-.+.||
T Consensus 390 vWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d---~v~ki~i~~aSvv~~~Wh 466 (641)
T KOG0772|consen 390 VWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD---TVYKIDISTASVVRCLWH 466 (641)
T ss_pred eeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee---eEEEecCCCceEEEEeec
Confidence 99999776555444433 345678999999999999864 2445553332222 111111126788999999
Q ss_pred CCCCEEEEEe-cCcEEEEe
Q 010256 496 PSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 496 pd~~~l~~~~-~~~~~i~~ 513 (514)
|.-+.|.+++ ++++.+||
T Consensus 467 pkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 467 PKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred chhhheeeecCCCceEEEE
Confidence 9988877665 66777776
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-26 Score=177.89 Aligned_cols=307 Identities=18% Similarity=0.174 Sum_probs=222.4
Q ss_pred cccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccc
Q 010256 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (514)
...+..|.+++|+|.|.+.|+|+...+.+|-....-.. + .++...+..|.......-+.|
T Consensus 29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~-------~-r~~hea~~~pp~v~~kr~khh------------ 88 (350)
T KOG0641|consen 29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALID-------L-RHAHEAAKQPPSVLCKRNKHH------------ 88 (350)
T ss_pred ecchhheeeEEecCCCceEEeccCCceEEEEccccccC-------c-ccccccccCCCeEEeeecccc------------
Confidence 34567899999999999999999999988876532110 1 111111122222222223334
Q ss_pred ccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
.+.|.|.+| ++.|+++++|+.|++|++..+....+.
T Consensus 89 kgsiyc~~w--s~~geliatgsndk~ik~l~fn~dt~~------------------------------------------ 124 (350)
T KOG0641|consen 89 KGSIYCTAW--SPCGELIATGSNDKTIKVLPFNADTCN------------------------------------------ 124 (350)
T ss_pred CccEEEEEe--cCccCeEEecCCCceEEEEeccccccc------------------------------------------
Confidence 499999999 678899999999999998766543211
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC----CCEEEEe--cCCeEEEEeccCCC
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD----GETFISA--DDLRINLWNLEISN 265 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~l~s~--~d~~i~iwd~~~~~ 265 (514)
++|- +. . +.-|.+.|..++|..+ +.+|+++ .|..|++-|..+++
T Consensus 125 -------~~g~--------------dl--------e-~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~ 174 (350)
T KOG0641|consen 125 -------ATGH--------------DL--------E-FNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ 174 (350)
T ss_pred -------ccCc--------------ce--------e-eeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC
Confidence 0000 00 0 2567889999999654 6678876 57888888877655
Q ss_pred ceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecccccee
Q 010256 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (514)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 345 (514)
... .+.+|.+.|.++- +-++ .+|++|+.|.+|++||++-...+...-..+..... ..+.|.
T Consensus 175 ~~~--------a~sghtghilaly-swn~-~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gl---------essava 235 (350)
T KOG0641|consen 175 GFH--------ALSGHTGHILALY-SWNG-AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGL---------ESSAVA 235 (350)
T ss_pred cce--------eecCCcccEEEEE-EecC-cEEEccCCCceEEEEeeeccceeeeccCcccCCCc---------ccceeE
Confidence 442 5678998888773 3345 79999999999999999987653221122221110 125799
Q ss_pred EEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEE
Q 010256 346 DIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 424 (514)
Q Consensus 346 ~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 424 (514)
+++..|.|++|++|. |....+||++- +++++.+..|...+. ++.|+|...||.+++.|..|++
T Consensus 236 av~vdpsgrll~sg~~dssc~lydirg-~r~iq~f~phsadir---------------~vrfsp~a~yllt~syd~~ikl 299 (350)
T KOG0641|consen 236 AVAVDPSGRLLASGHADSSCMLYDIRG-GRMIQRFHPHSADIR---------------CVRFSPGAHYLLTCSYDMKIKL 299 (350)
T ss_pred EEEECCCcceeeeccCCCceEEEEeeC-CceeeeeCCCcccee---------------EEEeCCCceEEEEecccceEEE
Confidence 999999999999995 48899999996 899999988876533 9999999999999999999999
Q ss_pred EecCCC---ceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 425 FGCSEG---SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 425 wd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
-|++.. +.....+..|.+.+-.+.|+|..--+++.|.|+++.+
T Consensus 300 tdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tl 345 (350)
T KOG0641|consen 300 TDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATL 345 (350)
T ss_pred eecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEE
Confidence 998742 1122556689999999999999998999999999888
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=197.73 Aligned_cols=322 Identities=16% Similarity=0.214 Sum_probs=231.9
Q ss_pred cccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccc
Q 010256 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (514)
Q Consensus 30 ~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (514)
+..+|.+.|..++.......+.+++.|.+.+||.+++++ ++.++.||.
T Consensus 143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~-----------------------CL~~Y~GH~--------- 190 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGA-----------------------CLATYTGHT--------- 190 (481)
T ss_pred hhcccccceeeehhhcCCcceeecccccceeEEeecccc-----------------------ceeeecccc---------
Confidence 456999999999999888899999999999999999887 567899999
Q ss_pred ccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
+.|++|.|++ .+.++++++.|++-.||...-.-....... +......... ..+ |...
T Consensus 191 ---GSVNsikfh~--s~~L~lTaSGD~taHIW~~av~~~vP~~~a---~~~hSsEeE~----------e~s-De~~---- 247 (481)
T KOG0300|consen 191 ---GSVNSIKFHN--SGLLLLTASGDETAHIWKAAVNWEVPSNNA---PSDHSSEEEE----------EHS-DEHN---- 247 (481)
T ss_pred ---cceeeEEecc--ccceEEEccCCcchHHHHHhhcCcCCCCCC---CCCCCchhhh----------hcc-cccc----
Confidence 9999999965 455999999999999997321100000000 0000000000 000 0000
Q ss_pred cCCCCCCcccCCCCC-CcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCce
Q 010256 190 FGCASNDSSFPPGGV-SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 267 (514)
.+.--.-..| .+|++ +... +.+|...|.+..|...|+.++++ .|.+..+||++++...
T Consensus 248 -----~d~d~~~~sD~~tiRv--------------Pl~~-ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v 307 (481)
T KOG0300|consen 248 -----RDTDSSEKSDGHTIRV--------------PLMR-LTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVV 307 (481)
T ss_pred -----cccccccccCCceeee--------------eeee-eeccccceEehhhhcCcceeeeeeccccceeeeeccCcee
Confidence 0000000111 13332 2222 37899999999999999999999 8999999999977654
Q ss_pred eeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEE
Q 010256 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 347 (514)
. .+.+|....+.++-+|.. +++++.+.|.+.++||++..-. . ...|++|...|+++
T Consensus 308 ~--------~LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFReaI~------s---------V~VFQGHtdtVTS~ 363 (481)
T KOG0300|consen 308 N--------ILTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREAIQ------S---------VAVFQGHTDTVTSV 363 (481)
T ss_pred c--------cccCcchhccccccCCcc-eEEEEeccCceeEeccchhhcc------e---------eeeecccccceeEE
Confidence 3 578999999999999998 8999999999999999984211 1 34577888999999
Q ss_pred EEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEe
Q 010256 348 KFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (514)
Q Consensus 348 ~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 426 (514)
.|..+. .+++|+| .+|+|||+++-..++.++...... ..++.+..+..|+.--++..|++||
T Consensus 364 vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~----------------NRvavs~g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 364 VFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPA----------------NRVAVSKGHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred EEecCC-ceeecCCCceEEEeeeccccCcceeeecCCcc----------------ceeEeecCCceEEeccCCceEEEEe
Confidence 999765 4556655 999999999867788888765543 2688888888999888889999999
Q ss_pred cCCCcee---eeeecCCCcceeEEEECCCCC--ceeecCCCCeEEE
Q 010256 427 CSEGSAE---STTLEASKNPMRRQVQTPSRP--SRPLGSLSGVVRR 467 (514)
Q Consensus 427 ~~~~~~~---~~~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~v~i 467 (514)
+...... ...-++|..-|.+.+|..+.. -|.+++.|+.+.-
T Consensus 427 lnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~g 472 (481)
T KOG0300|consen 427 LNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAG 472 (481)
T ss_pred cCCCccccCCcccccccceeeeeeeccccCcccccccccccceeee
Confidence 9743211 123458999999999975543 4678888876543
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-27 Score=214.44 Aligned_cols=279 Identities=16% Similarity=0.279 Sum_probs=217.1
Q ss_pred ceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccccee
Q 010256 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (514)
Q Consensus 37 ~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 116 (514)
..+-+.|+ ..+.||+|. +..|++|+..+++.. .+..+ ++ +.|+
T Consensus 179 Y~nlldWs-s~n~laVal-g~~vylW~~~s~~v~---------------------~l~~~--~~------------~~vt 221 (484)
T KOG0305|consen 179 YLNLLDWS-SANVLAVAL-GQSVYLWSASSGSVT---------------------ELCSF--GE------------ELVT 221 (484)
T ss_pred hhhHhhcc-cCCeEEEEe-cceEEEEecCCCceE---------------------EeEec--CC------------CceE
Confidence 34457788 455788774 447999998877642 12222 23 7799
Q ss_pred EEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCC
Q 010256 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND 196 (514)
Q Consensus 117 ~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 196 (514)
++.| +++|.+|++|..+|.|.|||..+.+........ ..+.|. +++|. +..+
T Consensus 222 Sv~w--s~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~-------h~~rvg-------~laW~--~~~l---------- 273 (484)
T KOG0305|consen 222 SVKW--SPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS-------HASRVG-------SLAWN--SSVL---------- 273 (484)
T ss_pred EEEE--CCCCCEEEEeecCCeEEEEehhhccccccccCC-------cCceeE-------EEecc--CceE----------
Confidence 9999 678889999999999999999887655444431 123343 66776 4444
Q ss_pred cccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCC
Q 010256 197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP 275 (514)
Q Consensus 197 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~ 275 (514)
.+|+.++.|.++| +...+.. .. .+.+|...|..++|++|+.++|+| .|+.+.|||....+..+
T Consensus 274 --ssGsr~~~I~~~d-vR~~~~~-----~~-~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~------- 337 (484)
T KOG0305|consen 274 --SSGSRDGKILNHD-VRISQHV-----VS-TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKF------- 337 (484)
T ss_pred --EEecCCCcEEEEE-Eecchhh-----hh-hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccE-------
Confidence 8899999999999 3332221 11 248899999999999999999999 99999999996555443
Q ss_pred CcccccCCceEEEEEecCCCcEEEEEe--cCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCC
Q 010256 276 ANMEDLTEVITSAEFHPTHCNMLAYSS--SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (514)
Q Consensus 276 ~~~~~~~~~i~~v~~~p~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 353 (514)
.+..|.+.|.+++|+|....+||+|+ .|+.|++||..++..+ ...... +.|++|.|++..
T Consensus 338 -~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i----~~vdtg-------------sQVcsL~Wsk~~ 399 (484)
T KOG0305|consen 338 -TFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARI----DSVDTG-------------SQVCSLIWSKKY 399 (484)
T ss_pred -EEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEe----cccccC-------------CceeeEEEcCCC
Confidence 56789999999999998878999876 4999999999998764 222222 579999999998
Q ss_pred CEEEEE---eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 354 RHILSR---DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 354 ~~l~~~---~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
+.|+++ ++..|.||+..+ .+.+..+.+|... |..++++|||..+++|+.|.++++|++-..
T Consensus 400 kEi~sthG~s~n~i~lw~~ps-~~~~~~l~gH~~R---------------Vl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 400 KELLSTHGYSENQITLWKYPS-MKLVAELLGHTSR---------------VLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CEEEEecCCCCCcEEEEeccc-cceeeeecCCcce---------------eEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 878774 238999999998 8889999999876 458999999999999999999999998753
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-27 Score=221.24 Aligned_cols=300 Identities=14% Similarity=0.164 Sum_probs=195.2
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCcc--ccCCcceecccccCCceeeccCCCcccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEK--AAGNGPIFGSHVSAIPKSYMANGGCGER 188 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (514)
+.+.|.++.| ++||+|||+|+.|+.|+||.+...+............. ..+++.+. .+.-++ +..-
T Consensus 266 h~gaIw~mKF--S~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~-------p~~s~~-~~~~-- 333 (712)
T KOG0283|consen 266 HKGAIWAMKF--SHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIE-------PSTSSE-EKIS-- 333 (712)
T ss_pred cCCcEEEEEe--CCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccC-------cccccc-cccc--
Confidence 3499999999 78999999999999999999987543221111100000 00000000 000000 0000
Q ss_pred ccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCce
Q 010256 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (514)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 267 (514)
......-.+.....+.+.+ .......++...| .||.+.|.++.|+.++ +|+++ .|.+|+||++.... +
T Consensus 334 ----~~~s~~~~~~~s~~~~~p~----~~f~f~ekP~~ef-~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~-C 402 (712)
T KOG0283|consen 334 ----SRTSSSRKGSQSPCVLLPL----KAFVFSEKPFCEF-KGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKE-C 402 (712)
T ss_pred ----ccccccccccCCccccCCC----ccccccccchhhh-hccchhheecccccCC-eeEeccccccEEeecCCCcc-e
Confidence 0000001111111122111 1122233455555 8999999999999877 55555 99999999999554 4
Q ss_pred eeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEE
Q 010256 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 347 (514)
+. .-.|.+.|+||+|+|-..++|++|+-|+.+|||++...+.. .-.+.+ .-|+++
T Consensus 403 L~--------~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv----~W~Dl~-------------~lITAv 457 (712)
T KOG0283|consen 403 LK--------VFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVV----DWNDLR-------------DLITAV 457 (712)
T ss_pred ee--------EEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeE----eehhhh-------------hhheeE
Confidence 33 23499999999999987799999999999999999886642 111222 479999
Q ss_pred EEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCC-CEEEEEeCCCcEEEE
Q 010256 348 KFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVF 425 (514)
Q Consensus 348 ~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iw 425 (514)
+|+|||++.+.|+. |.+++|+... .+.......+.....+. .-..|+.+.|.|.. ..+++.+.|.+||||
T Consensus 458 cy~PdGk~avIGt~~G~C~fY~t~~-lk~~~~~~I~~~~~Kk~-------~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~ 529 (712)
T KOG0283|consen 458 CYSPDGKGAVIGTFNGYCRFYDTEG-LKLVSDFHIRLHNKKKK-------QGKRITGLQFFPGDPDEVLVTSNDSRIRIY 529 (712)
T ss_pred EeccCCceEEEEEeccEEEEEEccC-CeEEEeeeEeeccCccc-------cCceeeeeEecCCCCCeEEEecCCCceEEE
Confidence 99999999999987 9999999985 55544443332211100 01136688887643 346667899999999
Q ss_pred ecCCCceeeeeecCCCcc--eeEEEECCCCCceeecCCCCeEEE
Q 010256 426 GCSEGSAESTTLEASKNP--MRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 426 d~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
|.... .+...++++... -....|+.||++|+++++|..|++
T Consensus 530 d~~~~-~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYi 572 (712)
T KOG0283|consen 530 DGRDK-DLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYI 572 (712)
T ss_pred eccch-hhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEE
Confidence 99654 455777766543 345678889999999999999999
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-26 Score=215.87 Aligned_cols=258 Identities=18% Similarity=0.246 Sum_probs=179.5
Q ss_pred ecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEe
Q 010256 53 GDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLS 132 (514)
Q Consensus 53 g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~ 132 (514)
|+.++.|++|+..... .+..+.+|. ..|.+++|+|. ++.+|++|
T Consensus 50 GG~~gvI~L~~~~r~~-----------------------~v~~L~gH~------------~~V~~lafsP~-~~~lLASg 93 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP-----------------------PVIKLKGHT------------SSILDLQFNPC-FSEILASG 93 (568)
T ss_pred CCceeEEEeeecCCCc-----------------------eEEEEcCCC------------CCEEEEEEcCC-CCCEEEEE
Confidence 4566778888764322 446788998 88999999653 25699999
Q ss_pred eCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEecee
Q 010256 133 TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVV 212 (514)
Q Consensus 133 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~ 212 (514)
+.|++|++||+.++..... . .
T Consensus 94 S~DgtIrIWDi~t~~~~~~-~---------------------------------------------i------------- 114 (568)
T PTZ00420 94 SEDLTIRVWEIPHNDESVK-E---------------------------------------------I------------- 114 (568)
T ss_pred eCCCeEEEEECCCCCcccc-c---------------------------------------------c-------------
Confidence 9999999999976421000 0 0
Q ss_pred eccccccccccccccccccCccCeEEEEECCCCCEE-EEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEE
Q 010256 213 VTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF-ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF 290 (514)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 290 (514)
..+... +.+|...|.+++|+|++..+ +++ .|++|++||+++++.... +. +...|.+++|
T Consensus 115 ---------~~p~~~-L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~--------i~-~~~~V~Slsw 175 (568)
T PTZ00420 115 ---------KDPQCI-LKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQ--------IN-MPKKLSSLKW 175 (568)
T ss_pred ---------ccceEE-eecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEE--------Ee-cCCcEEEEEE
Confidence 000011 36788999999999998764 677 899999999997654432 22 4567999999
Q ss_pred ecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccce-----eEEEEecCCCEEEEEe-C---
Q 010256 291 HPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI-----SDIKFARNGRHILSRD-Y--- 361 (514)
Q Consensus 291 ~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~~~s~~g~~l~~~~-~--- 361 (514)
+|+| .+|++++.|+.|+|||++++... ..+.. |.+.+ ....|++++.+|++++ +
T Consensus 176 spdG-~lLat~s~D~~IrIwD~Rsg~~i----~tl~g------------H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~ 238 (568)
T PTZ00420 176 NIKG-NLLSGTCVGKHMHIIDPRKQEIA----SSFHI------------HDGGKNTKNIWIDGLGGDDNYILSTGFSKNN 238 (568)
T ss_pred CCCC-CEEEEEecCCEEEEEECCCCcEE----EEEec------------ccCCceeEEEEeeeEcCCCCEEEEEEcCCCC
Confidence 9999 89999999999999999998753 33333 43433 3334568888888743 3
Q ss_pred -CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCC
Q 010256 362 -MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS 440 (514)
Q Consensus 362 -~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 440 (514)
+.|+|||++...+++..+..+..... ++.....++|.++++|+.|+.|++|++..+......--.+
T Consensus 239 ~R~VkLWDlr~~~~pl~~~~ld~~~~~-------------L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s 305 (568)
T PTZ00420 239 MREMKLWDLKNTTSALVTMSIDNASAP-------------LIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKS 305 (568)
T ss_pred ccEEEEEECCCCCCceEEEEecCCccc-------------eEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeeccccc
Confidence 37999999964667766644432210 1122234568899999999999999998763222222235
Q ss_pred CcceeEEEECCCCC
Q 010256 441 KNPMRRQVQTPSRP 454 (514)
Q Consensus 441 ~~~v~~~~~~~~~~ 454 (514)
..+...++|.|...
T Consensus 306 ~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 306 CSPFRSFGFLPKQI 319 (568)
T ss_pred CCCccceEEccccc
Confidence 67888999998743
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-26 Score=234.44 Aligned_cols=259 Identities=14% Similarity=0.225 Sum_probs=191.2
Q ss_pred cccccceEEEEEcC-CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 32 VQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 32 ~~h~~~V~~~~~s~-~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+...|.+++|+| ++.+||+++.||.|+|||+.+++ ....+.+|.
T Consensus 529 ~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~-----------------------~~~~~~~H~---------- 575 (793)
T PLN00181 529 LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ-----------------------LVTEMKEHE---------- 575 (793)
T ss_pred ecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe-----------------------EEEEecCCC----------
Confidence 34567899999998 57899999999999999987665 446678888
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|++++|+| .++.+|++++.|++|++||+.++......
T Consensus 576 --~~V~~l~~~p-~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~-------------------------------------- 614 (793)
T PLN00181 576 --KRVWSIDYSS-ADPTLLASGSDDGSVKLWSINQGVSIGTI-------------------------------------- 614 (793)
T ss_pred --CCEEEEEEcC-CCCCEEEEEcCCCEEEEEECCCCcEEEEE--------------------------------------
Confidence 8899999964 35679999999999999999876532211
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEEC-CCCCEEEEe-cCCeEEEEeccCCCcee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNN-SDGETFISA-DDLRINLWNLEISNQSF 268 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~-~d~~i~iwd~~~~~~~~ 268 (514)
. +...+.++.|+ +++.+|++| .|+.|++||++..+...
T Consensus 615 ---------------------------------------~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~ 654 (793)
T PLN00181 615 ---------------------------------------K-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPL 654 (793)
T ss_pred ---------------------------------------e-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccc
Confidence 1 11357788885 579999999 99999999998654322
Q ss_pred eeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEE
Q 010256 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (514)
Q Consensus 269 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (514)
. .+.+|...|.++.|. ++ ..|++++.|+.|++||++.+..... ......+.+|...+..++
T Consensus 655 ~-------~~~~h~~~V~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~~~~~~----------~~~l~~~~gh~~~i~~v~ 715 (793)
T PLN00181 655 C-------TMIGHSKTVSYVRFV-DS-STLVSSSTDNTLKLWDLSMSISGIN----------ETPLHSFMGHTNVKNFVG 715 (793)
T ss_pred e-------EecCCCCCEEEEEEe-CC-CEEEEEECCCEEEEEeCCCCccccC----------CcceEEEcCCCCCeeEEE
Confidence 1 456789999999997 45 6899999999999999976421000 001223566778899999
Q ss_pred EecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccc-cccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEe
Q 010256 349 FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEH-LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (514)
Q Consensus 349 ~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 426 (514)
|+|++.+|++|+. +.|++|+... ..++..+..... ...... ....-..|.+++|+|++.+|++|+.||.|+||+
T Consensus 716 ~s~~~~~lasgs~D~~v~iw~~~~-~~~~~s~~~~~~~~~~~~~---~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 716 LSVSDGYIATGSETNEVFVYHKAF-PMPVLSYKFKTIDPVSGLE---VDDASQFISSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred EcCCCCEEEEEeCCCEEEEEECCC-CCceEEEecccCCcccccc---cCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence 9999999999875 9999999875 444433322111 000000 001111256999999999999999999999998
Q ss_pred c
Q 010256 427 C 427 (514)
Q Consensus 427 ~ 427 (514)
+
T Consensus 792 ~ 792 (793)
T PLN00181 792 M 792 (793)
T ss_pred c
Confidence 6
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-26 Score=185.48 Aligned_cols=289 Identities=15% Similarity=0.183 Sum_probs=215.4
Q ss_pred eeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccC
Q 010256 95 EFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA 174 (514)
Q Consensus 95 ~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 174 (514)
.++||+ .+++.|.| +.+|.+|++++.|.++.+|--.+|+..-
T Consensus 5 ~l~GHE------------RplTqiKy--N~eGDLlFscaKD~~~~vw~s~nGerlG------------------------ 46 (327)
T KOG0643|consen 5 LLQGHE------------RPLTQIKY--NREGDLLFSCAKDSTPTVWYSLNGERLG------------------------ 46 (327)
T ss_pred ccccCc------------cccceEEe--cCCCcEEEEecCCCCceEEEecCCceee------------------------
Confidence 468898 89999999 6788899999999999999776665221
Q ss_pred CceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cC
Q 010256 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD 253 (514)
Q Consensus 175 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d 253 (514)
+ ..+|++.|+++..+.+.+.+++| .|
T Consensus 47 ----------------------------------------------------t-y~GHtGavW~~Did~~s~~liTGSAD 73 (327)
T KOG0643|consen 47 ----------------------------------------------------T-YDGHTGAVWCCDIDWDSKHLITGSAD 73 (327)
T ss_pred ----------------------------------------------------e-ecCCCceEEEEEecCCcceeeecccc
Confidence 1 27899999999999999999999 99
Q ss_pred CeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEec-----CCeEEEEEcCCCccccccccceecc
Q 010256 254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-----KGSIRLIDMRQSALCDTHSKLFEEQ 328 (514)
Q Consensus 254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~-----dg~i~~wd~~~~~~~~~~~~~~~~~ 328 (514)
.++++||++++++.... ....+|..+.|+++| ++++.... .+.|.++|++.......
T Consensus 74 ~t~kLWDv~tGk~la~~---------k~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~-------- 135 (327)
T KOG0643|consen 74 QTAKLWDVETGKQLATW---------KTNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDID-------- 135 (327)
T ss_pred ceeEEEEcCCCcEEEEe---------ecCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhhc--------
Confidence 99999999988876543 246789999999999 77766554 35799999985431100
Q ss_pred CCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEc
Q 010256 329 EAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 407 (514)
Q Consensus 329 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 407 (514)
...+...+..+.+.++.+-|+|-+++|++|.+ |.|.+||+++..+.+.....|... |..+.++
T Consensus 136 -s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~---------------Ind~q~s 199 (327)
T KOG0643|consen 136 -SEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSK---------------INDLQFS 199 (327)
T ss_pred -ccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccc---------------ccccccc
Confidence 00011123334478999999999999999965 999999999844556666666654 3389999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE-----eeCCCCCc------c
Q 010256 408 GDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR-----VKGADNSA------L 476 (514)
Q Consensus 408 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i-----~~~~~~~~------~ 476 (514)
+|..++++++.|.+-++||+.+.+.+ +++. -..|+++.+++|-...++.|+.--.--+ ..|.=..+ .
T Consensus 200 ~d~T~FiT~s~Dttakl~D~~tl~v~-Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~e 277 (327)
T KOG0643|consen 200 RDRTYFITGSKDTTAKLVDVRTLEVL-KTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFE 277 (327)
T ss_pred CCcceEEecccCccceeeeccceeeE-EEee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHH
Confidence 99999999999999999999976333 3333 3468999999998887777764433333 11110000 0
Q ss_pred ccCCcccccccceEEEEEcCCCCEEEEEecCcEE
Q 010256 477 DANGNAFDFSMKLLHLAWHPSENSIACAASNSLY 510 (514)
Q Consensus 477 ~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~ 510 (514)
+..+..-+|-++|+++||||||+..++|++++-+
T Consensus 278 EEigrvkGHFGPINsvAfhPdGksYsSGGEDG~V 311 (327)
T KOG0643|consen 278 EEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYV 311 (327)
T ss_pred HHhccccccccCcceeEECCCCcccccCCCCceE
Confidence 1122233588999999999999999999977643
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-27 Score=206.70 Aligned_cols=272 Identities=13% Similarity=0.199 Sum_probs=209.4
Q ss_pred ceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCC
Q 010256 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDL 254 (514)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~ 254 (514)
+++|+|....- +.....-.+.+|+ .... ...+.+ ......+.+++|-.||++|++| ..|
T Consensus 31 sl~fsp~~P~d------------~aVt~S~rvqly~-~~~~------~~~k~~-srFk~~v~s~~fR~DG~LlaaGD~sG 90 (487)
T KOG0310|consen 31 SLCFSPKHPYD------------FAVTSSVRVQLYS-SVTR------SVRKTF-SRFKDVVYSVDFRSDGRLLAAGDESG 90 (487)
T ss_pred eEecCCCCCCc------------eEEecccEEEEEe-cchh------hhhhhH-HhhccceeEEEeecCCeEEEccCCcC
Confidence 78888866553 4444445667666 2221 122222 4556789999999999999999 899
Q ss_pred eEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCcc
Q 010256 255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 334 (514)
Q Consensus 255 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 334 (514)
.|++||+.+ +...+ .+.+|+.++..+.|+|++...|++|+.|+.+++||+.+....
T Consensus 91 ~V~vfD~k~-r~iLR-------~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~---------------- 146 (487)
T KOG0310|consen 91 HVKVFDMKS-RVILR-------QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQ---------------- 146 (487)
T ss_pred cEEEecccc-HHHHH-------HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEE----------------
Confidence 999999653 33322 578899999999999998789999999999999999886531
Q ss_pred ceeeccccceeEEEEecCC-CEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCE
Q 010256 335 SFFTEIIASISDIKFARNG-RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR 412 (514)
Q Consensus 335 ~~~~~~~~~i~~~~~s~~g-~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 412 (514)
..+.+|+..|.+.+|+|.. ..+++|+. |.|++||.+.....+.++. |..+ |.++.+-|.|..
T Consensus 147 ~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~p---------------Ve~vl~lpsgs~ 210 (487)
T KOG0310|consen 147 AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCP---------------VESVLALPSGSL 210 (487)
T ss_pred EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCc---------------eeeEEEcCCCCE
Confidence 1267788999999999964 47778875 9999999997444444543 3333 238999999999
Q ss_pred EEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEE
Q 010256 413 VATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHL 492 (514)
Q Consensus 413 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~ 492 (514)
|++++. +.|+|||+.+|.++......|...|+++.+..++.-|+++|.|+.|++++..+.. ..-...+.++|.++
T Consensus 211 iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~K----vv~s~~~~~pvLsi 285 (487)
T KOG0310|consen 211 IASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYK----VVHSWKYPGPVLSI 285 (487)
T ss_pred EEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceE----EEEeeecccceeeE
Confidence 998876 6899999998877776677799999999999999999999999999995432222 01123467999999
Q ss_pred EEcCCCCEEEEEecCcEEEE
Q 010256 493 AWHPSENSIACAASNSLYMY 512 (514)
Q Consensus 493 ~~spd~~~l~~~~~~~~~i~ 512 (514)
+.+||+..+++|-.|++...
T Consensus 286 avs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 286 AVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred EecCCCceEEEecccceeee
Confidence 99999999999998887653
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-26 Score=187.66 Aligned_cols=277 Identities=18% Similarity=0.227 Sum_probs=206.4
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
..|+++.| +.+|.++++++.|.++++||..+++..+....
T Consensus 15 ~~i~sl~f--s~~G~~litss~dDsl~LYd~~~g~~~~ti~s-------------------------------------- 54 (311)
T KOG1446|consen 15 GKINSLDF--SDDGLLLITSSEDDSLRLYDSLSGKQVKTINS-------------------------------------- 54 (311)
T ss_pred CceeEEEe--cCCCCEEEEecCCCeEEEEEcCCCceeeEeec--------------------------------------
Confidence 67999999 67888999999999999999998876554332
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEE-Ee--cCCeEEEEeccCCCceee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI-SA--DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~--~d~~i~iwd~~~~~~~~~ 269 (514)
++..+..++|......++ +. .|.+|+..++.+.+...
T Consensus 55 ---------------------------------------kkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylR- 94 (311)
T KOG1446|consen 55 ---------------------------------------KKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLR- 94 (311)
T ss_pred ---------------------------------------ccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEE-
Confidence 223455666654444444 43 59999999999665443
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
.+.+|...|.+++.+|-+ ..+++++.|++|++||++..+.. -.+.. ..-..++|
T Consensus 95 -------YF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cq----g~l~~--------------~~~pi~Af 148 (311)
T KOG1446|consen 95 -------YFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQ----GLLNL--------------SGRPIAAF 148 (311)
T ss_pred -------EcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCc----eEEec--------------CCCcceeE
Confidence 689999999999999998 89999999999999999975542 11111 23345799
Q ss_pred ecCCCEEEEEeC-CeEEEEEccCC-CCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEec
Q 010256 350 ARNGRHILSRDY-MTLKLWDINMD-SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (514)
Q Consensus 350 s~~g~~l~~~~~-~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 427 (514)
.|.|-++|++.. ..|++||++.- ..|..++........ +...+.|||||++|+.++..+.+++.|.
T Consensus 149 Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~------------ew~~l~FS~dGK~iLlsT~~s~~~~lDA 216 (311)
T KOG1446|consen 149 DPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEA------------EWTDLEFSPDGKSILLSTNASFIYLLDA 216 (311)
T ss_pred CCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCcc------------ceeeeEEcCCCCEEEEEeCCCcEEEEEc
Confidence 999999999876 59999999873 456666654422111 1238999999999999999999999999
Q ss_pred CCCceeeeeecCCCcce---eEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccc-cccceEEEEEcCCCCEEEE
Q 010256 428 SEGSAESTTLEASKNPM---RRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFD-FSMKLLHLAWHPSENSIAC 503 (514)
Q Consensus 428 ~~~~~~~~~~~~~~~~v---~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~-~~~~v~~~~~spd~~~l~~ 503 (514)
-+|. ...++.++...- -...|+||++++++|+.||+|.+++...-. ......+ +...+.++.|+|.-.++++
T Consensus 217 f~G~-~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~---~v~~~~~~~~~~~~~~~fnP~~~mf~s 292 (311)
T KOG1446|consen 217 FDGT-VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGK---KVAVLRGPNGGPVSCVRFNPRYAMFVS 292 (311)
T ss_pred cCCc-EeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCc---EeeEecCCCCCCccccccCCceeeeee
Confidence 9885 456777665443 577899999999999999999993322111 1111112 5778899999999998888
Q ss_pred EecCcEEEE
Q 010256 504 AASNSLYMY 512 (514)
Q Consensus 504 ~~~~~~~i~ 512 (514)
++.. +.+|
T Consensus 293 a~s~-l~fw 300 (311)
T KOG1446|consen 293 ASSN-LVFW 300 (311)
T ss_pred cCce-EEEE
Confidence 7655 4554
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-26 Score=216.03 Aligned_cols=241 Identities=13% Similarity=0.224 Sum_probs=170.8
Q ss_pred cccCccCeEEEEECCC-CCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCe
Q 010256 229 AHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 306 (514)
Q Consensus 229 ~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~ 306 (514)
+.+|.+.|.+++|+|+ +.+|++| .|++|++||+.+.......+......+.+|...|.+++|+|++..+|++++.|+.
T Consensus 70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dgt 149 (568)
T PTZ00420 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSF 149 (568)
T ss_pred EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCe
Confidence 3789999999999997 7899999 9999999999854321110000012457789999999999998556789999999
Q ss_pred EEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeecccc
Q 010256 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHL 385 (514)
Q Consensus 307 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~ 385 (514)
|++||+++++.. ..+. |...|.+++|+|+|.+|++++ |+.|+|||+++ ++.+.++.+|.+.
T Consensus 150 IrIWDl~tg~~~----~~i~-------------~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rs-g~~i~tl~gH~g~ 211 (568)
T PTZ00420 150 VNIWDIENEKRA----FQIN-------------MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRK-QEIASSFHIHDGG 211 (568)
T ss_pred EEEEECCCCcEE----EEEe-------------cCCcEEEEEECCCCCEEEEEecCCEEEEEECCC-CcEEEEEecccCC
Confidence 999999987642 1221 225799999999999999875 59999999997 8888888888764
Q ss_pred ccccccccccCCccceeeEEEcCCCCEEEEEeCCC----cEEEEecCCCceeeeee--cCCCcceeEEEECCCCCceeec
Q 010256 386 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN----LFRVFGCSEGSAESTTL--EASKNPMRRQVQTPSRPSRPLG 459 (514)
Q Consensus 386 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~ 459 (514)
+.. ..++...|++++++|++++.|+ .|+|||+.........+ ..+...+......+++.++++|
T Consensus 212 ~~s----------~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsG 281 (568)
T PTZ00420 212 KNT----------KNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIG 281 (568)
T ss_pred cee----------EEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEE
Confidence 310 0022345678999999888764 79999998643333333 3333444444446678999999
Q ss_pred CCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCC
Q 010256 460 SLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN 499 (514)
Q Consensus 460 s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~ 499 (514)
+.|++|++++-.... ......+.+...+..++|.|+..
T Consensus 282 kGD~tIr~~e~~~~~--~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 282 KGDGNCRYYQHSLGS--IRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred ECCCeEEEEEccCCc--EEeecccccCCCccceEEccccc
Confidence 999999993321110 01111223567778899998754
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-25 Score=200.93 Aligned_cols=249 Identities=15% Similarity=0.207 Sum_probs=188.3
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccc
Q 010256 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (514)
.+.|.||||+.+.+.||.+-.+|.|.||++..+- -....+.+++ ...
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w----------------------~~~~vi~g~~-----------drs 71 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNW----------------------FLEPVIHGPE-----------DRS 71 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCc----------------------eeeEEEecCC-----------CCc
Confidence 4789999999999999999999999999986432 2344566654 378
Q ss_pred eeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCC
Q 010256 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (514)
Q Consensus 115 v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (514)
|.+++|+ ++..|++.+.+|.|.-||+.+++.+...... .+.++ +++..|.+..+
T Consensus 72 IE~L~W~---e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~--------gg~IW-------siai~p~~~~l-------- 125 (691)
T KOG2048|consen 72 IESLAWA---EGGRLFSSGLSGSITEWDLHTLKQKYNIDSN--------GGAIW-------SIAINPENTIL-------- 125 (691)
T ss_pred eeeEEEc---cCCeEEeecCCceEEEEecccCceeEEecCC--------Cccee-------EEEeCCccceE--------
Confidence 9999995 3558999999999999999999877766555 35666 77777777776
Q ss_pred CCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeecc
Q 010256 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 273 (514)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~ 273 (514)
+.|++||.+..++ . +.+. .+..+. +...+++|.+++|+|++..+++| .||.|++||...+.... ++..
T Consensus 126 ----~IgcddGvl~~~s-~-~p~~---I~~~r~-l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~-~~~~ 194 (691)
T KOG2048|consen 126 ----AIGCDDGVLYDFS-I-GPDK---ITYKRS-LMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLH-IITM 194 (691)
T ss_pred ----EeecCCceEEEEe-c-CCce---EEEEee-cccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEE-Eeee
Confidence 9999999666554 1 1111 111122 24456899999999999999999 99999999999665544 4433
Q ss_pred CCCcccc-cCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecC
Q 010256 274 KPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (514)
Q Consensus 274 ~~~~~~~-~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 352 (514)
+...+.. ...-|+++.|-.++ .|++|..-|.|.+||...+.+.+ . +.-|.+.|.+++..++
T Consensus 195 ~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gTLiq----S------------~~~h~adVl~Lav~~~ 256 (691)
T KOG2048|consen 195 QLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGTLIQ----S------------HSCHDADVLALAVADN 256 (691)
T ss_pred cccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcchhh----h------------hhhhhcceeEEEEcCC
Confidence 3333333 45567899988775 89999999999999999988742 2 3445678999999999
Q ss_pred CCEEEEE-eCCeEEEEEccC
Q 010256 353 GRHILSR-DYMTLKLWDINM 371 (514)
Q Consensus 353 g~~l~~~-~~~~i~iwd~~~ 371 (514)
+..++++ -|+.|..|....
T Consensus 257 ~d~vfsaGvd~~ii~~~~~~ 276 (691)
T KOG2048|consen 257 EDRVFSAGVDPKIIQYSLTT 276 (691)
T ss_pred CCeEEEccCCCceEEEEecC
Confidence 7777774 568877777665
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=191.47 Aligned_cols=291 Identities=14% Similarity=0.180 Sum_probs=197.8
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcc--cCCcccccc-cccccccCCccceeeeeeccCC-------
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRD--NGGQRRDLE-MMDYSMSRHPEFRYKTEFQSHE------- 100 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~------- 100 (514)
..+|.+.|++++|+.||++|||.+.|+.|+||++.+-.. ..-.|+.++ .+...+.|.|+.+.....-...
T Consensus 82 LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk 161 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYK 161 (420)
T ss_pred hhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEE
Confidence 468999999999999999999999999999999876432 112233333 2444566777654332110000
Q ss_pred ------Cc----ccccccc----ccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcc
Q 010256 101 ------PE----FDYLKSL----EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGP 166 (514)
Q Consensus 101 ------~~----~~~~~~~----~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
.. +..+..+ .++-.|..+.. ..++.++++++.|..|.+|+++ |+.......+..
T Consensus 162 ~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi--A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~--------- 229 (420)
T KOG2096|consen 162 LVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI--AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQS--------- 229 (420)
T ss_pred eeecccCCCCcccccccccccchhcccceEEEee--cCCceEEEEecCCCcEEEEecC-Cceeeeeccccc---------
Confidence 00 0000111 12233444444 5677899999999999999999 555444433321
Q ss_pred eecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCC
Q 010256 167 IFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE 246 (514)
Q Consensus 167 v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 246 (514)
.....+.+|+|+.+ ++++....+++|.++...+.......+..-+.+|...|..++|+++.+
T Consensus 230 ------~n~~aavSP~GRFi------------a~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~ 291 (420)
T KOG2096|consen 230 ------SNYDAAVSPDGRFI------------AVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST 291 (420)
T ss_pred ------cccceeeCCCCcEE------------EEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc
Confidence 11156889999998 999999999999977666654443333334589999999999999999
Q ss_pred EEEEe-cCCeEEEEeccCCC---ceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccc
Q 010256 247 TFISA-DDLRINLWNLEISN---QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS 322 (514)
Q Consensus 247 ~l~s~-~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 322 (514)
.+++. .||++++||++-.- +...++..-+..+....+....++++|.| ..|+ .+....+++|..++++....
T Consensus 292 r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g-~~lA-~s~gs~l~~~~se~g~~~~~-- 367 (420)
T KOG2096|consen 292 RAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSG-DSLA-VSFGSDLKVFASEDGKDYPE-- 367 (420)
T ss_pred eeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCC-cEEE-eecCCceEEEEcccCccchh--
Confidence 99999 99999999986321 11111111111222334445589999999 6666 45567899999998775311
Q ss_pred cceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEE
Q 010256 323 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWD 368 (514)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd 368 (514)
+ -..|...|.+++|+++|+++++++|..++++.
T Consensus 368 --~-----------e~~h~~~Is~is~~~~g~~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 368 --L-----------EDIHSTTISSISYSSDGKYIATCGDRYVRVIR 400 (420)
T ss_pred --H-----------HHhhcCceeeEEecCCCcEEeeecceeeeeec
Confidence 1 23466899999999999999999998888875
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.3e-27 Score=201.92 Aligned_cols=270 Identities=15% Similarity=0.258 Sum_probs=195.3
Q ss_pred ccccccceEEEEEcCCC-CeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccc
Q 010256 31 EVQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g-~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (514)
.+.|.+.|+.+..-|.. ..+|+++..+.|.|||.......... ..+.+....+.+|.
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~-------------~~~~~Pdl~L~gH~--------- 177 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA-------------SGECRPDLRLKGHE--------- 177 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc-------------cccCCCceEEEeec---------
Confidence 46899999999999954 67888889999999998754432100 00233444578887
Q ss_pred ccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
..-..+.|++...| .|++++.|++|++||+...... ++
T Consensus 178 ---~eg~glsWn~~~~g-~Lls~~~d~~i~lwdi~~~~~~---------------------------------~~----- 215 (422)
T KOG0264|consen 178 ---KEGYGLSWNRQQEG-TLLSGSDDHTICLWDINAESKE---------------------------------DK----- 215 (422)
T ss_pred ---ccccccccccccce-eEeeccCCCcEEEEeccccccC---------------------------------Cc-----
Confidence 44677999876665 7999999999999999754310 00
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCC-CEEEEe-cCCeEEEEeccCCCce
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQS 267 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~ 267 (514)
. ..+ +....+|...|..++|++.. .+|+++ +|+.+.|||+++....
T Consensus 216 ----------------~---------------~~p-~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~ 263 (422)
T KOG0264|consen 216 ----------------V---------------VDP-KTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSK 263 (422)
T ss_pred ----------------c---------------ccc-eEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCC
Confidence 0 001 11238999999999999964 455666 9999999999963111
Q ss_pred eeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEE
Q 010256 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 347 (514)
. .....+|.+.+.+++|+|.+..+||+|+.|++|.+||+|+-..+ ..+ +.+|...|..|
T Consensus 264 ~------~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~---lh~------------~e~H~dev~~V 322 (422)
T KOG0264|consen 264 P------SHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKP---LHT------------FEGHEDEVFQV 322 (422)
T ss_pred C------cccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccC---cee------------ccCCCcceEEE
Confidence 1 12567899999999999988899999999999999999986542 333 55666899999
Q ss_pred EEecCCCEE-EE-EeCCeEEEEEccCCCCc----------eeeeeeccccccccccccccCCccceeeEEEcCCCCE-EE
Q 010256 348 KFARNGRHI-LS-RDYMTLKLWDINMDSGP----------VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR-VA 414 (514)
Q Consensus 348 ~~s~~g~~l-~~-~~~~~i~iwd~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~ 414 (514)
.|||....+ ++ |.|+.+.|||+..-++. ...+..|.+... .|..+.|+|+..+ |+
T Consensus 323 ~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~------------kV~DfsWnp~ePW~I~ 390 (422)
T KOG0264|consen 323 EWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA------------KVSDFSWNPNEPWTIA 390 (422)
T ss_pred EeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccc------------ccccccCCCCCCeEEE
Confidence 999976544 44 46799999999763322 222333433322 3448899998775 67
Q ss_pred EEeCCCcEEEEecCC
Q 010256 415 TGSYSNLFRVFGCSE 429 (514)
Q Consensus 415 s~~~dg~i~iwd~~~ 429 (514)
+.+.|+.+.||++..
T Consensus 391 SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 391 SVAEDNILQIWQMAE 405 (422)
T ss_pred EecCCceEEEeeccc
Confidence 889999999999873
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=220.43 Aligned_cols=252 Identities=15% Similarity=0.186 Sum_probs=187.8
Q ss_pred ccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCC--Ccee---------eeeccCCCcccccCCceEEEEEecCCCcE
Q 010256 230 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS--NQSF---------NIVDVKPANMEDLTEVITSAEFHPTHCNM 297 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~--~~~~---------~~~~~~~~~~~~~~~~i~~v~~~p~~~~~ 297 (514)
..|.+.|+|+.|+|||++||+| +|+.|.+|..... .... +-+. ....+.+|...|..++|+|++ .+
T Consensus 66 ~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk-~~~~l~~H~~DV~Dv~Wsp~~-~~ 143 (942)
T KOG0973|consen 66 DDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWK-VVSILRGHDSDVLDVNWSPDD-SL 143 (942)
T ss_pred ccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceee-EEEEEecCCCccceeccCCCc-cE
Confidence 6799999999999999999999 9999999998730 0000 0000 002577899999999999998 89
Q ss_pred EEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE-eCCeEEEEEccCCCCce
Q 010256 298 LAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPV 376 (514)
Q Consensus 298 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~iwd~~~~~~~~ 376 (514)
|++++.|++|.+||.++.+. ++. +.+|.+.|..+.|.|-|+||++- +|++|+||++.. -...
T Consensus 144 lvS~s~DnsViiwn~~tF~~----~~v------------l~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d-w~i~ 206 (942)
T KOG0973|consen 144 LVSVSLDNSVIIWNAKTFEL----LKV------------LRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD-WGIE 206 (942)
T ss_pred EEEecccceEEEEcccccee----eee------------eecccccccceEECCccCeeeeecCCceEEEEEccc-ceee
Confidence 99999999999999998754 333 55666899999999999999995 559999999765 5555
Q ss_pred eeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe----CCCcEEEEecCCCceeeeeecCCCcceeEEEECCC
Q 010256 377 ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS----YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS 452 (514)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 452 (514)
+.+..+-.....- .-...+.|||||.+|++.. .-..+.|.+..+- .....+-||..++..+.|+|.
T Consensus 207 k~It~pf~~~~~~---------T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tW-k~~~~LvGH~~p~evvrFnP~ 276 (942)
T KOG0973|consen 207 KSITKPFEESPLT---------TFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTW-KVDKDLVGHSAPVEVVRFNPK 276 (942)
T ss_pred EeeccchhhCCCc---------ceeeecccCCCcCeecchhhccCCcceeEEEecCCc-eeeeeeecCCCceEEEEeChH
Confidence 5555443321100 0123789999999999763 2246788877543 334788999999999999872
Q ss_pred -----CC------------ceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEe-cCcEEEE
Q 010256 453 -----RP------------SRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMY 512 (514)
Q Consensus 453 -----~~------------~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~~i~ 512 (514)
.+ .+|+||.|+++-+.....+. .+.....=+...|.+++|+|||-.|.+++ ++.+.++
T Consensus 277 lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R--Pl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 277 LFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR--PLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred HhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC--chhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEE
Confidence 11 68999999999996555444 23332233678999999999998887777 5555554
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.4e-26 Score=184.69 Aligned_cols=314 Identities=16% Similarity=0.249 Sum_probs=220.1
Q ss_pred ccccccceEEEEEcC-CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccc
Q 010256 31 EVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~-~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (514)
...|.+.|+++.+.+ .|+|+++|+.||.|.+||++........ .+-.+..++ .-...-.+|.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s--~li~k~~c~------v~~~h~~~Hk--------- 101 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEAS--GLIAKHKCI------VAKQHENGHK--------- 101 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhc--cceeheeee------ccccCCccce---------
Confidence 457999999999998 7899999999999999999765421000 000000000 0000123344
Q ss_pred ccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
-.|..+.|-|-..| ++.+++-|.++++||..+-+....+.++
T Consensus 102 ---y~iss~~WyP~DtG-mFtssSFDhtlKVWDtnTlQ~a~~F~me---------------------------------- 143 (397)
T KOG4283|consen 102 ---YAISSAIWYPIDTG-MFTSSSFDHTLKVWDTNTLQEAVDFKME---------------------------------- 143 (397)
T ss_pred ---eeeeeeEEeeecCc-eeecccccceEEEeecccceeeEEeecC----------------------------------
Confidence 67999999987665 8889999999999999987654443333
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC---CCEEEEe-cCCeEEEEeccCCC
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD---GETFISA-DDLRINLWNLEISN 265 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~s~-~d~~i~iwd~~~~~ 265 (514)
+.|++-+++|- ..++|+| .+-.|++-|+..+.
T Consensus 144 --------------------------------------------~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs 179 (397)
T KOG4283|consen 144 --------------------------------------------GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS 179 (397)
T ss_pred --------------------------------------------ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc
Confidence 22344445542 4467778 89999999999665
Q ss_pred ceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCC--Cccceeeccccc
Q 010256 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP--GTRSFFTEIIAS 343 (514)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 343 (514)
.. +++.+|.+.|.++.|+|...-.|++|+.||.|++||++...-+ ...++.++.. .....-..|.+.
T Consensus 180 ~s--------H~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgc---f~~lD~hn~k~~p~~~~n~ah~gk 248 (397)
T KOG4283|consen 180 FS--------HTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGC---FRVLDQHNTKRPPILKTNTAHYGK 248 (397)
T ss_pred ce--------eeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccce---eEEeecccCccCccccccccccce
Confidence 43 2689999999999999998778999999999999999976444 5566665421 112234678999
Q ss_pred eeEEEEecCCCEEEE-EeCCeEEEEEccCCCCceeeeeeccccccccccccccCCc-cceeeEEEcCCCCEEEEEeCCCc
Q 010256 344 ISDIKFARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSI-FDKFECCLSGDGGRVATGSYSNL 421 (514)
Q Consensus 344 i~~~~~s~~g~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~dg~ 421 (514)
+..++|+.++.++++ |.|..+++|+.......+..+- ... ++..+ +.+ -+. +.+...++.--.++.
T Consensus 249 vngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g-~~~---------~n~~~~~~~-~~~-~~~s~vfv~~p~~~~ 316 (397)
T KOG4283|consen 249 VNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFG-PII---------HNQTTSFAV-HIQ-SMDSDVFVLFPNDGS 316 (397)
T ss_pred eeeeeecccchhhhhccCccceEEeecccCcccccccc-ccc---------ccccccceE-EEe-ecccceEEEEecCCe
Confidence 999999999999998 5679999999987322222221 100 00110 001 122 333444444456688
Q ss_pred EEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 422 FRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 422 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+.++++-++.. +..+..|...+.+.++.|+-+.+.+|+.|+.+..
T Consensus 317 lall~~~sgs~-ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~ 361 (397)
T KOG4283|consen 317 LALLNLLEGSF-VRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYM 361 (397)
T ss_pred EEEEEccCceE-EEeeecccceeeEEeecCchhhhhccccCCcccc
Confidence 99999988754 4788889888999999999999999999999887
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-27 Score=211.73 Aligned_cols=296 Identities=19% Similarity=0.292 Sum_probs=221.6
Q ss_pred cccccceE---EEEEcC-CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccc
Q 010256 32 VQEVDIIS---AIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (514)
Q Consensus 32 ~~h~~~V~---~~~~s~-~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (514)
.+|...|. ++..+. .++||+||+.||.|++|++...... |+-.+...++.|.
T Consensus 18 ~qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~-----------------~s~~~~asme~Hs------- 73 (735)
T KOG0308|consen 18 KQNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNE-----------------PSTPYIASMEHHS------- 73 (735)
T ss_pred hhccccccchhhccccCCCCceEEecCCCceEEEeccccccCC-----------------cccchhhhhhhhH-------
Confidence 46777777 666664 6778999999999999998644321 2333567788888
Q ss_pred ccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccc
Q 010256 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (514)
Q Consensus 108 ~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 187 (514)
+.|+.+..+ .+++.|++++.|-+|++|+...+..
T Consensus 74 -----DWVNDiiL~--~~~~tlIS~SsDtTVK~W~~~~~~~--------------------------------------- 107 (735)
T KOG0308|consen 74 -----DWVNDIILC--GNGKTLISASSDTTVKVWNAHKDNT--------------------------------------- 107 (735)
T ss_pred -----hHHhhHHhh--cCCCceEEecCCceEEEeecccCcc---------------------------------------
Confidence 899999985 5667899999999999999865420
Q ss_pred cccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEE-CCCCCEEEEe-cCCeEEEEeccCCC
Q 010256 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISN-NSDGETFISA-DDLRINLWNLEISN 265 (514)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~s~-~d~~i~iwd~~~~~ 265 (514)
-|..+ +..|++.|.|++. .++...+|+| -|+.|.+||++++-
T Consensus 108 -----------------------------------~c~st-ir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~ 151 (735)
T KOG0308|consen 108 -----------------------------------FCMST-IRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGT 151 (735)
T ss_pred -----------------------------------hhHhh-hhcccchheeeeecccCceeEEecCCCccEEEEEccCcc
Confidence 01111 3679999999999 7888899998 89999999999663
Q ss_pred c--eeeeeccCCCccc-ccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecccc
Q 010256 266 Q--SFNIVDVKPANME-DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (514)
Q Consensus 266 ~--~~~~~~~~~~~~~-~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (514)
. ....-......+. ++...|++++.++.| ..|++|+..+.+++||.++.+... .+.||+.
T Consensus 152 ~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~kim----------------kLrGHTd 214 (735)
T KOG0308|consen 152 ATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCKKIM----------------KLRGHTD 214 (735)
T ss_pred hhhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEecccccccee----------------eeecccc
Confidence 2 1111111112334 788999999999999 899999999999999999987642 2567889
Q ss_pred ceeEEEEecCCCEEEEE-eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCc
Q 010256 343 SISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 421 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 421 (514)
.|..+..++||..++++ +||+|++||+.. .+++.++..|... |+++..+|+=..+.+|+.||.
T Consensus 215 NVr~ll~~dDGt~~ls~sSDgtIrlWdLgq-QrCl~T~~vH~e~---------------VWaL~~~~sf~~vYsG~rd~~ 278 (735)
T KOG0308|consen 215 NVRVLLVNDDGTRLLSASSDGTIRLWDLGQ-QRCLATYIVHKEG---------------VWALQSSPSFTHVYSGGRDGN 278 (735)
T ss_pred ceEEEEEcCCCCeEeecCCCceEEeeeccc-cceeeeEEeccCc---------------eEEEeeCCCcceEEecCCCCc
Confidence 99999999999999986 569999999997 8999999999865 568888899899999999999
Q ss_pred EEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 422 FRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 422 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
|+.=|+.+..... .+-....+|..+..+....-+=+++.|+.|+-
T Consensus 279 i~~Tdl~n~~~~t-lick~daPv~~l~~~~~~~~~WvtTtds~I~r 323 (735)
T KOG0308|consen 279 IYRTDLRNPAKST-LICKEDAPVLKLHLHEHDNSVWVTTTDSSIKR 323 (735)
T ss_pred EEecccCCchhhe-EeecCCCchhhhhhccccCCceeeecccccee
Confidence 9999998753322 22222334444444432222234445665555
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-26 Score=189.96 Aligned_cols=303 Identities=13% Similarity=0.158 Sum_probs=209.4
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
..+.+-+| ++||.++++|+.|-.|+|.|++.--.+. ... ..
T Consensus 113 ~~cR~aaf--s~DG~lvATGsaD~SIKildvermlaks--~~~----------------------em------------- 153 (430)
T KOG0640|consen 113 SPCRAAAF--SPDGSLVATGSADASIKILDVERMLAKS--KPK----------------------EM------------- 153 (430)
T ss_pred cceeeeee--CCCCcEEEccCCcceEEEeehhhhhhhc--chh----------------------hh-------------
Confidence 88999999 7899999999999999999987321000 000 00
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
..+... ......++ +..|..+|+++.|+|....|++| .|++|++||+.........
T Consensus 154 ------~~~~~q---------------a~hPvIRT-lYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~- 210 (430)
T KOG0640|consen 154 ------ISGDTQ---------------ARHPVIRT-LYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAF- 210 (430)
T ss_pred ------ccCCcc---------------cCCceEee-hhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHH-
Confidence 000000 00011122 37899999999999999999999 9999999999743211110
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
..-....+|.++.|+|.| .+|+.|..-..+++||+.+.++... .. .-.+|++.|+++.+++
T Consensus 211 -----K~~qd~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~Qcfvs-------an------Pd~qht~ai~~V~Ys~ 271 (430)
T KOG0640|consen 211 -----KVFQDTEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTYQCFVS-------AN------PDDQHTGAITQVRYSS 271 (430)
T ss_pred -----HHhhccceeeeEeecCCC-ceEEEecCCCceeEEeccceeEeee-------cC------cccccccceeEEEecC
Confidence 112235789999999999 8999999999999999998765311 10 1356889999999999
Q ss_pred CCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 352 NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 352 ~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
.|++.++++. |.|++||--. ++++.++....+. . .|.+..|+.+|+||.+.+.|..+++|.+.++
T Consensus 272 t~~lYvTaSkDG~IklwDGVS-~rCv~t~~~AH~g-s------------evcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 272 TGSLYVTASKDGAIKLWDGVS-NRCVRTIGNAHGG-S------------EVCSAVFTKNGKYILSSGKDSTVKLWEISTG 337 (430)
T ss_pred CccEEEEeccCCcEEeecccc-HHHHHHHHhhcCC-c------------eeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence 9999999875 9999999876 7888777533221 1 1448899999999999999999999999998
Q ss_pred ceeeeeecCC-----CcceeEEEECCCCCceeecCCCCeEEEeeCCCCCc-cccCCcccccccceEEEEEcCCCCEEEEE
Q 010256 431 SAESTTLEAS-----KNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSA-LDANGNAFDFSMKLLHLAWHPSENSIACA 504 (514)
Q Consensus 431 ~~~~~~~~~~-----~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~-~~~~~~~~~~~~~v~~~~~spd~~~l~~~ 504 (514)
..+ ..+.+. ...-+...|+....|++.-.+...--. .|.-.. +....-.++|.+.++.+.-||.+..+.++
T Consensus 338 R~l-~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slc--sWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTc 414 (430)
T KOG0640|consen 338 RML-KEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLC--SWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTC 414 (430)
T ss_pred ceE-EEEecCCcccchhhhhhhhhcCccceEEccccccCcee--eccccchhhhhhcccCCCCCceEEEeCCCCCceeee
Confidence 655 344332 122234455555555544432211111 111111 11222345799999999999999988877
Q ss_pred e-cCcEEEEe
Q 010256 505 A-SNSLYMYY 513 (514)
Q Consensus 505 ~-~~~~~i~~ 513 (514)
+ +-...+|+
T Consensus 415 sdD~raRFWy 424 (430)
T KOG0640|consen 415 SDDFRARFWY 424 (430)
T ss_pred cccceeeeee
Confidence 7 55777886
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-27 Score=195.13 Aligned_cols=283 Identities=17% Similarity=0.233 Sum_probs=219.4
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
..+.|..| +|||++|++++.||.|.+||..+|++..-+.+.. +.+
T Consensus 214 Sh~EcA~F--SPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQA-------------------------qd~-------- 258 (508)
T KOG0275|consen 214 SHVECARF--SPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQA-------------------------QDN-------- 258 (508)
T ss_pred cchhheee--CCCCceEeeccccceeeeehhccchhhhhhhhhh-------------------------hcc--------
Confidence 56888899 6789999999999999999999998765444331 111
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
+--+...|.|++|+.|.+.+++| .||.|++|.++++....++
T Consensus 259 ------------------------------------fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrF- 301 (508)
T KOG0275|consen 259 ------------------------------------FMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRF- 301 (508)
T ss_pred ------------------------------------eeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHh-
Confidence 12355789999999999999999 9999999999987655421
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
-..|...|+++.|+.|+ ..+++++.|.++++.-+.+|++. +. +.+|.+.|+...|++
T Consensus 302 ------drAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~L----KE------------frGHsSyvn~a~ft~ 358 (508)
T KOG0275|consen 302 ------DRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKCL----KE------------FRGHSSYVNEATFTD 358 (508)
T ss_pred ------hhhhccCeeEEEEccCc-chhhcccccceEEEeccccchhH----HH------------hcCccccccceEEcC
Confidence 23689999999999999 88999999999999999999873 22 667779999999999
Q ss_pred CCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcC-CCCEEEEEeCCCcEEEEecCC
Q 010256 352 NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 352 ~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~ 429 (514)
+|..+++++ ||+|++|+.++ ..++.+++...... .|.++-.-| +...++.+...++|+|.++..
T Consensus 359 dG~~iisaSsDgtvkvW~~Kt-teC~~Tfk~~~~d~-------------~vnsv~~~PKnpeh~iVCNrsntv~imn~qG 424 (508)
T KOG0275|consen 359 DGHHIISASSDGTVKVWHGKT-TECLSTFKPLGTDY-------------PVNSVILLPKNPEHFIVCNRSNTVYIMNMQG 424 (508)
T ss_pred CCCeEEEecCCccEEEecCcc-hhhhhhccCCCCcc-------------cceeEEEcCCCCceEEEEcCCCeEEEEeccc
Confidence 999999975 69999999998 88888886544221 133554444 556788888999999999872
Q ss_pred Cceeeeeec-CC--CcceeEEEECCCCCceeecCCCCeEEE---eeCCCCCccccCCcccccccceEEEEEcCCCCEEEE
Q 010256 430 GSAESTTLE-AS--KNPMRRQVQTPSRPSRPLGSLSGVVRR---VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIAC 503 (514)
Q Consensus 430 ~~~~~~~~~-~~--~~~v~~~~~~~~~~~l~s~s~d~~v~i---~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~ 503 (514)
+....+. +. .+..-+.+.+|.|.++.+.++|+.++. ..|.... .+. -|...|..++-+|-.++||+
T Consensus 425 --QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~--tl~----VhEkdvIGl~HHPHqNllAs 496 (508)
T KOG0275|consen 425 --QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLER--TLP----VHEKDVIGLTHHPHQNLLAS 496 (508)
T ss_pred --eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceee--eee----cccccccccccCcccchhhh
Confidence 3434443 22 234557788999999999999999887 3333222 233 37899999999999999998
Q ss_pred EecCcE-EEE
Q 010256 504 AASNSL-YMY 512 (514)
Q Consensus 504 ~~~~~~-~i~ 512 (514)
-+++++ .+|
T Consensus 497 YsEDgllKLW 506 (508)
T KOG0275|consen 497 YSEDGLLKLW 506 (508)
T ss_pred hcccchhhhc
Confidence 886654 444
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-25 Score=205.64 Aligned_cols=380 Identities=10% Similarity=0.144 Sum_probs=278.6
Q ss_pred eEEEEEcCC--CCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccce
Q 010256 38 ISAIEFDKS--GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (514)
Q Consensus 38 V~~~~~s~~--g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (514)
|+++. +|. =+.++.|+.+|.+.|||+.+++ .+.+++++. ..|
T Consensus 162 Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K-----------------------~v~~f~~~~------------s~I 205 (910)
T KOG1539|consen 162 ITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGK-----------------------VVYTFQEFF------------SRI 205 (910)
T ss_pred eeeEe-cchhheeeEEEeecCCcEEEEEeccCc-----------------------EEEEecccc------------cce
Confidence 77765 553 3568899999999999999888 457888887 889
Q ss_pred eEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCC
Q 010256 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (514)
Q Consensus 116 ~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (514)
+++.=+|--| .++.|..+|+|.+++++.++....++.. .+.|. .++|..||+.+
T Consensus 206 T~ieqsPaLD--VVaiG~~~G~ViifNlK~dkil~sFk~d--------~g~Vt-------slSFrtDG~p~--------- 259 (910)
T KOG1539|consen 206 TAIEQSPALD--VVAIGLENGTVIIFNLKFDKILMSFKQD--------WGRVT-------SLSFRTDGNPL--------- 259 (910)
T ss_pred eEeccCCcce--EEEEeccCceEEEEEcccCcEEEEEEcc--------cccee-------EEEeccCCCee---------
Confidence 9999866555 8999999999999999999987776654 34555 88999999876
Q ss_pred CcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccC
Q 010256 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 274 (514)
Q Consensus 196 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~ 274 (514)
.++++..|.+.+|| +..... .......|.+.|....|.|....++++ .|..+++|-.+++....+++
T Consensus 260 --las~~~~G~m~~wD-Le~kkl------~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~L--- 327 (910)
T KOG1539|consen 260 --LASGRSNGDMAFWD-LEKKKL------INVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLL--- 327 (910)
T ss_pred --EEeccCCceEEEEE-cCCCee------eeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchhe---
Confidence 37778889999999 433221 222235788999999999999999998 89999999776555433322
Q ss_pred CCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccc----------------------------------
Q 010256 275 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT---------------------------------- 320 (514)
Q Consensus 275 ~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~---------------------------------- 320 (514)
+...+|..+..++.|.-.....+.+++.|++++.+++.....-.+
T Consensus 328 -R~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~ 406 (910)
T KOG1539|consen 328 -RSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENA 406 (910)
T ss_pred -eeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccc
Confidence 234689999999999844448999999999998887653211000
Q ss_pred ----------------cccceeccCCCCccce-----eeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceee
Q 010256 321 ----------------HSKLFEEQEAPGTRSF-----FTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVAT 378 (514)
Q Consensus 321 ----------------~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~ 378 (514)
..++|.-.+...-+.+ ++.....+++++.++.|.+.+.|.. |.|.+|++++ +....+
T Consensus 407 RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS-Gi~r~s 485 (910)
T KOG1539|consen 407 REKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQS-GIHRKS 485 (910)
T ss_pred hhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEccc-Ceeecc
Confidence 0011110000000000 1112257899999999999999866 9999999997 666666
Q ss_pred e---eeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCc
Q 010256 379 F---QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPS 455 (514)
Q Consensus 379 ~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 455 (514)
+ ..|... |+.++...-++.+++++.+|.+++||..... +...+. -..++..+..+.....
T Consensus 486 f~~~~ah~~~---------------V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~-l~~~l~-l~~~~~~iv~hr~s~l 548 (910)
T KOG1539|consen 486 FGDSPAHKGE---------------VTGLAVDGTNRLLVSAGADGILKFWDFKKKV-LKKSLR-LGSSITGIVYHRVSDL 548 (910)
T ss_pred cccCccccCc---------------eeEEEecCCCceEEEccCcceEEEEecCCcc-eeeeec-cCCCcceeeeeehhhh
Confidence 6 344443 4488888888999999999999999998653 323332 2345667777878888
Q ss_pred eeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 456 RPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 456 l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
++.+..|-.|++++-.... +.....+|...|++++|||||++|++++ +..+++|.
T Consensus 549 ~a~~~ddf~I~vvD~~t~k---vvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 549 LAIALDDFSIRVVDVVTRK---VVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWD 604 (910)
T ss_pred hhhhcCceeEEEEEchhhh---hhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence 9999999999995443211 2234446999999999999999999998 68888986
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-26 Score=214.93 Aligned_cols=278 Identities=13% Similarity=0.175 Sum_probs=216.1
Q ss_pred cccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccc
Q 010256 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (514)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (514)
|...+.+..|. +.++++++.+++|.+|+..++.. ....+.||. +
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~----------------------i~~~l~GH~------------g 250 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYL----------------------ILTRLVGHF------------G 250 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceE----------------------EEeeccCCC------------C
Confidence 57789999998 56899999999999999887664 334489999 9
Q ss_pred ceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCC
Q 010256 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (514)
Q Consensus 114 ~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (514)
.|.++++. .-+.++++|+.|.++++||..++++...+..+.. .+. ...-....+
T Consensus 251 ~V~~l~~~--~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~s--------tv~---------~~~~~~~~~------- 304 (537)
T KOG0274|consen 251 GVWGLAFP--SGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTS--------SVR---------CLTIDPFLL------- 304 (537)
T ss_pred CceeEEEe--cCCCEEEEEecCCcEEeEecCCCcEEEEecCCCc--------eEE---------EEEccCceE-------
Confidence 99999994 2456999999999999999999999988886632 222 222233333
Q ss_pred CCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeec
Q 010256 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (514)
Q Consensus 194 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~ 272 (514)
++|+.|.+|++|+ +. ...+...+ .+|.++|+++..+ +.++++| .|++|++||+.+.+...
T Consensus 305 -----~sgs~D~tVkVW~-v~------n~~~l~l~-~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~---- 365 (537)
T KOG0274|consen 305 -----VSGSRDNTVKVWD-VT------NGACLNLL-RGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLK---- 365 (537)
T ss_pred -----eeccCCceEEEEe-cc------CcceEEEe-ccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeee----
Confidence 7789999999999 33 23344443 6699999999998 7889998 99999999999665443
Q ss_pred cCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCC-ccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS-ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 273 ~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
++.+|...|+++.+.+. ..+++|+.|+.|++||+++. ++ +.+ +.+|.+-+..+.+
T Consensus 366 ----sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c----~~t------------l~~h~~~v~~l~~-- 421 (537)
T KOG0274|consen 366 ----SLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKC----IHT------------LQGHTSLVSSLLL-- 421 (537)
T ss_pred ----eecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhhh----hhh------------hcCCccccccccc--
Confidence 67889999999988774 58999999999999999998 44 344 4445566655554
Q ss_pred CCCEEEEEe-CCeEEEEEccCCCCceeeeeec-cccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCC
Q 010256 352 NGRHILSRD-YMTLKLWDINMDSGPVATFQVH-EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 352 ~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 429 (514)
.+++|++++ |++|++||... ++++.++.++ ... |+.+++. ...+++++.||.+++||+.+
T Consensus 422 ~~~~Lvs~~aD~~Ik~WD~~~-~~~~~~~~~~~~~~---------------v~~l~~~--~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 422 RDNFLVSSSADGTIKLWDAEE-GECLRTLEGRHVGG---------------VSALALG--KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred ccceeEeccccccEEEeeccc-CceeeeeccCCccc---------------EEEeecC--cceEEEEecCCeeEEEeccc
Confidence 477888875 59999999997 8999998874 222 2245543 46788899999999999998
Q ss_pred Cceee
Q 010256 430 GSAES 434 (514)
Q Consensus 430 ~~~~~ 434 (514)
+....
T Consensus 484 ~~~~~ 488 (537)
T KOG0274|consen 484 GTLIR 488 (537)
T ss_pred Cchhh
Confidence 85543
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-25 Score=208.74 Aligned_cols=207 Identities=14% Similarity=0.201 Sum_probs=160.5
Q ss_pred cccCccCeEEEEECC-CCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCe
Q 010256 229 AHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 306 (514)
Q Consensus 229 ~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~ 306 (514)
+.+|.+.|.+++|+| ++++|++| .|++|++||+.+....... ......+.+|...|.+++|+|++.++|++++.|+.
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~-~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNI-SDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccccc-CcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 378999999999999 78899999 9999999999754321000 00012567899999999999986579999999999
Q ss_pred EEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeecccc
Q 010256 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHL 385 (514)
Q Consensus 307 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~ 385 (514)
|+|||+++++.. .. +.+|...|.+++|+|+|.+|++++ |++|+|||+++ ++.+..+..|...
T Consensus 150 VrIWDl~tg~~~----~~------------l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rs-g~~v~tl~~H~~~ 212 (493)
T PTZ00421 150 VNVWDVERGKAV----EV------------IKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRD-GTIVSSVEAHASA 212 (493)
T ss_pred EEEEECCCCeEE----EE------------EcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCC-CcEEEEEecCCCC
Confidence 999999887642 22 445667899999999999999976 59999999997 7888888877653
Q ss_pred ccccccccccCCccceeeEEEcCCCCEEEEEe----CCCcEEEEecCCCceeeeeecCCC-cceeEEEECCCCCceeecC
Q 010256 386 RPKLCDLYENDSIFDKFECCLSGDGGRVATGS----YSNLFRVFGCSEGSAESTTLEASK-NPMRRQVQTPSRPSRPLGS 460 (514)
Q Consensus 386 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~s 460 (514)
. ...+.|.+++..|++++ .|+.|++||+.+..........+. ..+....|++++++|++++
T Consensus 213 ~--------------~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lgg 278 (493)
T PTZ00421 213 K--------------SQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGS 278 (493)
T ss_pred c--------------ceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEE
Confidence 2 11577889888877654 478999999987654444444333 4455667899999998887
Q ss_pred -CCCeEEE
Q 010256 461 -LSGVVRR 467 (514)
Q Consensus 461 -~d~~v~i 467 (514)
.|+.|++
T Consensus 279 kgDg~Iri 286 (493)
T PTZ00421 279 KGEGNIRC 286 (493)
T ss_pred eCCCeEEE
Confidence 5999999
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=185.62 Aligned_cols=235 Identities=13% Similarity=0.195 Sum_probs=187.6
Q ss_pred ccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEE
Q 010256 230 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 308 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~ 308 (514)
.+|++.|++.+.+.+-..-+++ .|-+.++||.-++..+.. -.|..-|.+++|+.|. +.|++|+.+..+|
T Consensus 56 eghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhs---------f~hkhivk~~af~~ds-~~lltgg~ekllr 125 (334)
T KOG0278|consen 56 EGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHS---------FEHKHIVKAVAFSQDS-NYLLTGGQEKLLR 125 (334)
T ss_pred eccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhh---------hhhhheeeeEEecccc-hhhhccchHHHhh
Confidence 7899999999999888888888 899999999988876532 2488899999999998 8999999999999
Q ss_pred EEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeecccccc
Q 010256 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRP 387 (514)
Q Consensus 309 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~ 387 (514)
+||++..+.. ...+.+|.+.|..+.|....+.++++.+ ++||+||.++ +..++++......
T Consensus 126 vfdln~p~Ap---------------p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rT-gt~v~sL~~~s~V-- 187 (334)
T KOG0278|consen 126 VFDLNRPKAP---------------PKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRT-GTEVQSLEFNSPV-- 187 (334)
T ss_pred hhhccCCCCC---------------chhhcCCCCcceeEEEeccCceEEeeccCCceEEEEecc-CcEEEEEecCCCC--
Confidence 9999765432 2236778899999999998888888654 9999999998 8888888766543
Q ss_pred ccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 388 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 388 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.++.++++|++|.++ ..+.|.+||..+...+ +..+ -...|.+...+|+..++++|++|..++.
T Consensus 188 --------------tSlEvs~dG~ilTia-~gssV~Fwdaksf~~l-Ks~k-~P~nV~SASL~P~k~~fVaGged~~~~k 250 (334)
T KOG0278|consen 188 --------------TSLEVSQDGRILTIA-YGSSVKFWDAKSFGLL-KSYK-MPCNVESASLHPKKEFFVAGGEDFKVYK 250 (334)
T ss_pred --------------cceeeccCCCEEEEe-cCceeEEeccccccce-eecc-CccccccccccCCCceEEecCcceEEEE
Confidence 389999999987654 5578999999876433 2222 2234677888999999999999999998
Q ss_pred --eeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 468 --VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 468 --~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
+...... ....-+|-+.|.++.|+|||..-|+|+ ++.++||+
T Consensus 251 fDy~TgeEi----~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 251 FDYNTGEEI----GSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred EeccCCcee----eecccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence 2222222 111236889999999999999999999 66788887
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=184.33 Aligned_cols=261 Identities=17% Similarity=0.228 Sum_probs=199.3
Q ss_pred cccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccc
Q 010256 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (514)
Q Consensus 30 ~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (514)
.+.+|.+.|..+...-.|++|||++.|++|+|+.+..... .+.+.++.||.
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~--------------------s~ll~~L~Gh~--------- 56 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ--------------------SKLLAELTGHS--------- 56 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC--------------------ceeeeEecCCC---------
Confidence 4568999999999999999999999999999999876542 24778999999
Q ss_pred ccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
++|..++|....-|.+|++++.||.|.||.-++++..+..
T Consensus 57 ---GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~------------------------------------- 96 (299)
T KOG1332|consen 57 ---GPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAY------------------------------------- 96 (299)
T ss_pred ---CCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhh-------------------------------------
Confidence 9999999976557889999999999999998877421110
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC--CCEEEEe-cCCeEEEEeccCCCc
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQ 266 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~ 266 (514)
. ...|...|++++|.|. |-.|+++ .||.|.+.+.+....
T Consensus 97 -------------------------------------e-~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~ 138 (299)
T KOG1332|consen 97 -------------------------------------E-HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG 138 (299)
T ss_pred -------------------------------------h-hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC
Confidence 0 2578899999999987 6678888 999999999886522
Q ss_pred eeeeeccCCCcccccCCceEEEEEecC---C----------CcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCc
Q 010256 267 SFNIVDVKPANMEDLTEVITSAEFHPT---H----------CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT 333 (514)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~i~~v~~~p~---~----------~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 333 (514)
-.. +.....|.-.|++++|.|. | .+.|++|+.|..|+||+..++.-..
T Consensus 139 w~t-----~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~-------------- 199 (299)
T KOG1332|consen 139 WTT-----SKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKL-------------- 199 (299)
T ss_pred ccc-----hhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhh--------------
Confidence 110 1134668899999999986 2 1469999999999999998863211
Q ss_pred cceeeccccceeEEEEecCC----CEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcC
Q 010256 334 RSFFTEIIASISDIKFARNG----RHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 408 (514)
Q Consensus 334 ~~~~~~~~~~i~~~~~s~~g----~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (514)
..++.+|.+.|+.++|.|.- .+|++++ ||++.||..+.+..+-..-..+... + .++.+.||.
T Consensus 200 e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~----------~---~~w~vSWS~ 266 (299)
T KOG1332|consen 200 ERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFP----------D---VVWRVSWSL 266 (299)
T ss_pred hhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCC----------c---ceEEEEEec
Confidence 12367788999999999953 4778876 4999999887432221111111111 1 145899999
Q ss_pred CCCEEEEEeCCCcEEEEecCC
Q 010256 409 DGGRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 409 ~~~~l~s~~~dg~i~iwd~~~ 429 (514)
.|+.|+.++.|+.|.+|.-..
T Consensus 267 sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 267 SGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred cccEEEEecCCcEEEEEEeCC
Confidence 999999999999999997553
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=184.01 Aligned_cols=250 Identities=16% Similarity=0.202 Sum_probs=191.0
Q ss_pred cccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEe-cCCCcEEEEEecCCe
Q 010256 229 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH-PTHCNMLAYSSSKGS 306 (514)
Q Consensus 229 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~-p~~~~~l~~~~~dg~ 306 (514)
...|.+.|.++..+--|+.|+++ +|++|+|+..+...+...+ .++.+|.++|..++|. |.-+.+||+++.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll-----~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgk 81 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLL-----AELTGHSGPVWKVAWAHPKFGTILASCSYDGK 81 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceee-----eEecCCCCCeeEEeecccccCcEeeEeecCce
Confidence 46899999999998899999999 9999999999977653322 3789999999999995 433389999999999
Q ss_pred EEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecC--CCEEEEE-eCCeEEEEEccCCCC--ceeeeee
Q 010256 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN--GRHILSR-DYMTLKLWDINMDSG--PVATFQV 381 (514)
Q Consensus 307 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--g~~l~~~-~~~~i~iwd~~~~~~--~~~~~~~ 381 (514)
|.||.-.+++-. .. ..+..|...|++++|.|. |-.|+++ +||.|.|.+.+..+. .......
T Consensus 82 VIiWke~~g~w~--k~------------~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~a 147 (299)
T KOG1332|consen 82 VIIWKEENGRWT--KA------------YEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFA 147 (299)
T ss_pred EEEEecCCCchh--hh------------hhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhc
Confidence 999998877421 11 124567789999999995 5566665 569999999987422 2233344
Q ss_pred ccccccccccccccCCccceeeEEEcCC---C-----------CEEEEEeCCCcEEEEecCCCceee-eeecCCCcceeE
Q 010256 382 HEHLRPKLCDLYENDSIFDKFECCLSGD---G-----------GRVATGSYSNLFRVFGCSEGSAES-TTLEASKNPMRR 446 (514)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~-----------~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~v~~ 446 (514)
|... |.+++|.|- | +.|++|+.|+.|+||+..++.... .+|++|.+.|+.
T Consensus 148 H~~G---------------vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRD 212 (299)
T KOG1332|consen 148 HEIG---------------VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRD 212 (299)
T ss_pred cccc---------------cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhh
Confidence 5433 348888885 4 569999999999999999875544 669999999999
Q ss_pred EEECCCC----CceeecCCCCeEEEeeCCCCCccccCCcc-cccccceEEEEEcCCCCEEEEE-ecCcEEEEe
Q 010256 447 QVQTPSR----PSRPLGSLSGVVRRVKGADNSALDANGNA-FDFSMKLLHLAWHPSENSIACA-ASNSLYMYY 513 (514)
Q Consensus 447 ~~~~~~~----~~l~s~s~d~~v~i~~~~~~~~~~~~~~~-~~~~~~v~~~~~spd~~~l~~~-~~~~~~i~~ 513 (514)
+++.|.- .+||++|.||+|.|....... .+-..+. .++...+.++.||+.|+.|+++ +++.+.+|-
T Consensus 213 VAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~-e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 213 VAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY-EPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred hhhccccCCCceeeEEecCCCcEEEEEecCcc-CcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 9999864 479999999999993222111 1122222 2467889999999999999955 488888873
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-27 Score=197.37 Aligned_cols=284 Identities=13% Similarity=0.187 Sum_probs=210.1
Q ss_pred eeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceeccc
Q 010256 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (514)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (514)
++..+.||. +.|.+++=+|..- ..+++|+.||.|++||+.+.++.
T Consensus 58 Fv~~L~gHr------------dGV~~lakhp~~l-s~~aSGs~DG~VkiWnlsqR~~~---------------------- 102 (433)
T KOG0268|consen 58 FVGSLDGHR------------DGVSCLAKHPNKL-STVASGSCDGEVKIWNLSQRECI---------------------- 102 (433)
T ss_pred chhhccccc------------cccchhhcCcchh-hhhhccccCceEEEEehhhhhhh----------------------
Confidence 445577887 8999999866432 46889999999999998765421
Q ss_pred ccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe
Q 010256 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 251 (514)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 251 (514)
+. +..|.+.|..|++.. +..+.+|
T Consensus 103 ------------------------------------------------------~~-f~AH~G~V~Gi~v~~-~~~~tvg 126 (433)
T KOG0268|consen 103 ------------------------------------------------------RT-FKAHEGLVRGICVTQ-TSFFTVG 126 (433)
T ss_pred ------------------------------------------------------he-eecccCceeeEEecc-cceEEec
Confidence 11 367889999999987 4444445
Q ss_pred cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCC
Q 010256 252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (514)
Q Consensus 252 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 331 (514)
+|.+|+.|.++. . ..+. + .....+..+.-+..+ +.+++++. .|.|||.+-... +..+.-
T Consensus 127 dDKtvK~wk~~~-~-p~~t-------i-lg~s~~~gIdh~~~~-~~FaTcGe--~i~IWD~~R~~P----v~smsw---- 185 (433)
T KOG0268|consen 127 DDKTVKQWKIDG-P-PLHT-------I-LGKSVYLGIDHHRKN-SVFATCGE--QIDIWDEQRDNP----VSSMSW---- 185 (433)
T ss_pred CCcceeeeeccC-C-ccee-------e-ecccccccccccccc-ccccccCc--eeeecccccCCc----cceeec----
Confidence 999999999873 2 2221 1 134566777777666 78888875 688999865443 233322
Q ss_pred CccceeeccccceeEEEEecCCCEEE-EE-eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCC
Q 010256 332 GTRSFFTEIIASISDIKFARNGRHIL-SR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (514)
Q Consensus 332 ~~~~~~~~~~~~i~~~~~s~~g~~l~-~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 409 (514)
....|.++.|+|....++ ++ +|+.|.+||++. ..+++.+....... .++|+|+
T Consensus 186 --------G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~-~~Pl~KVi~~mRTN----------------~IswnPe 240 (433)
T KOG0268|consen 186 --------GADSISSVKFNPVETSILASCASDRSIVLYDLRQ-ASPLKKVILTMRTN----------------TICWNPE 240 (433)
T ss_pred --------CCCceeEEecCCCcchheeeeccCCceEEEeccc-CCccceeeeecccc----------------ceecCcc
Confidence 225799999999766554 44 679999999998 78877665443221 7999998
Q ss_pred CCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccce
Q 010256 410 GGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKL 489 (514)
Q Consensus 410 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v 489 (514)
+-.+++|+.|..++.||+...........+|.+.|..+.|+|.|+-+++||.|.+|||..-..-...++.. ..--..|
T Consensus 241 afnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYh--tkRMq~V 318 (433)
T KOG0268|consen 241 AFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYH--TKRMQHV 318 (433)
T ss_pred ccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhh--Hhhhhee
Confidence 87888999999999999998777778899999999999999999999999999999993222111111111 0113578
Q ss_pred EEEEEcCCCCEEEEEe-cCcEEEEeC
Q 010256 490 LHLAWHPSENSIACAA-SNSLYMYYA 514 (514)
Q Consensus 490 ~~~~~spd~~~l~~~~-~~~~~i~~~ 514 (514)
.++.||-|.++|.+|+ +.++.+|-|
T Consensus 319 ~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 319 FCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred eEEEEeccccEEEecCCCcceeeeec
Confidence 9999999999999999 668899965
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-25 Score=185.08 Aligned_cols=311 Identities=14% Similarity=0.210 Sum_probs=223.1
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccc
Q 010256 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (514)
......+.|||||.-|++-+.|..+.+|++...--.... .........+.+ +... .+.
T Consensus 49 ~nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~-----~~~~~~~~~~~~---r~~e--------------g~t 106 (406)
T KOG2919|consen 49 LNFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKA-----DGPLNFSKHLSY---RYQE--------------GET 106 (406)
T ss_pred hhhhccceeCCCCceEEeecccCeeeEEecChhhcccCC-----CCccccccceeE---Eecc--------------CCE
Confidence 355678999999999999999999999997532211000 000000111111 1111 155
Q ss_pred eeEEEEee-----CCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 115 INKIRWCQ-----SANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 115 v~~i~~~~-----~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
|..-+|-+ .|+..++++.+.+.-|++||..+|+......
T Consensus 107 vydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~------------------------------------ 150 (406)
T KOG2919|consen 107 VYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYR------------------------------------ 150 (406)
T ss_pred EEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchh------------------------------------
Confidence 77878864 4556688999999999999999887543211
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceee
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFN 269 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~ 269 (514)
.|| . ...-....+++|+|||..|.+|....|+++|+...+....
T Consensus 151 -------------------~yd----h-------------~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~ 194 (406)
T KOG2919|consen 151 -------------------AYD----H-------------QDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCP 194 (406)
T ss_pred -------------------hhh----h-------------HHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCc
Confidence 111 0 0000234589999999999999999999999954544332
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
......+.-.+..+.+.+++|+|.....++.|+...++-||.-..+..+ ..+.+|.+.|+.+.|
T Consensus 195 vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl----------------~llggh~gGvThL~~ 258 (406)
T KOG2919|consen 195 VYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL----------------QLLGGHGGGVTHLQW 258 (406)
T ss_pred chhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCce----------------eeecccCCCeeeEEe
Confidence 2211111223446778999999998679999999999999887665542 235577899999999
Q ss_pred ecCCCEEEEEeC--CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEec
Q 010256 350 ARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (514)
Q Consensus 350 s~~g~~l~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 427 (514)
.++|..|.+|.. ..|..||++....++..+..|....+ ..| -....|++++|++|+.||.|++||+
T Consensus 259 ~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TN--------QRI----~FDld~~~~~LasG~tdG~V~vwdl 326 (406)
T KOG2919|consen 259 CEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTN--------QRI----LFDLDPKGEILASGDTDGSVRVWDL 326 (406)
T ss_pred ccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCcc--------ceE----EEecCCCCceeeccCCCccEEEEec
Confidence 999999999863 79999999987888888888765221 111 3566799999999999999999999
Q ss_pred CCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 428 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+........+..+...++.+.++|.-+++|++|..+....
T Consensus 327 k~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr~f~~ 366 (406)
T KOG2919|consen 327 KDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQRIFKY 366 (406)
T ss_pred CCCCCcccccccccccccceecCcccceeeeccCceeecC
Confidence 9854555778889999999999999999999987766655
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.7e-26 Score=205.69 Aligned_cols=269 Identities=13% Similarity=0.194 Sum_probs=214.8
Q ss_pred eEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCC
Q 010256 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (514)
Q Consensus 116 ~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (514)
+-+.|+ .. ..+++| ....|.+|+..+++...+..+. ...+. ++.|+++|..|
T Consensus 181 nlldWs--s~-n~laVa-lg~~vylW~~~s~~v~~l~~~~--------~~~vt-------Sv~ws~~G~~L--------- 232 (484)
T KOG0305|consen 181 NLLDWS--SA-NVLAVA-LGQSVYLWSASSGSVTELCSFG--------EELVT-------SVKWSPDGSHL--------- 232 (484)
T ss_pred hHhhcc--cC-CeEEEE-ecceEEEEecCCCceEEeEecC--------CCceE-------EEEECCCCCEE---------
Confidence 346674 22 244444 4568999999999877777764 13333 89999999999
Q ss_pred CcccCCCCCCcEEeceeecccccccccccccccccc-CccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeecc
Q 010256 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHA-HDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 273 (514)
Q Consensus 196 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~ 273 (514)
++|..+|.+.||| ..... ..+.+ .+ |...|-+++|+ +..+.+| .|+.|..+|++..+....
T Consensus 233 ---avG~~~g~v~iwD-~~~~k------~~~~~-~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~---- 295 (484)
T KOG0305|consen 233 ---AVGTSDGTVQIWD-VKEQK------KTRTL-RGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS---- 295 (484)
T ss_pred ---EEeecCCeEEEEe-hhhcc------ccccc-cCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh----
Confidence 9999999999999 33322 22232 44 99999999998 6778888 999999999997766543
Q ss_pred CCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec-C
Q 010256 274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-N 352 (514)
Q Consensus 274 ~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~ 352 (514)
.+.+|...|..+.|++++ +++|+|+.|+.+.|||...... ...+.+|.+.|.+++|+| .
T Consensus 296 ---~~~~H~qeVCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~p----------------~~~~~~H~aAVKA~awcP~q 355 (484)
T KOG0305|consen 296 ---TLQGHRQEVCGLKWSPDG-NQLASGGNDNVVFIWDGLSPEP----------------KFTFTEHTAAVKALAWCPWQ 355 (484)
T ss_pred ---hhhcccceeeeeEECCCC-CeeccCCCccceEeccCCCccc----------------cEEEeccceeeeEeeeCCCc
Confidence 367899999999999999 9999999999999999954333 234677889999999999 4
Q ss_pred CCEEEEEe---CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEE--eCCCcEEEEec
Q 010256 353 GRHILSRD---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG--SYSNLFRVFGC 427 (514)
Q Consensus 353 g~~l~~~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~--~~dg~i~iwd~ 427 (514)
..+||+|+ |+.|++||..+ +..+..+..... |.++.|++..+.|+++ -.++.|.||+.
T Consensus 356 ~~lLAsGGGs~D~~i~fwn~~~-g~~i~~vdtgsQ----------------VcsL~Wsk~~kEi~sthG~s~n~i~lw~~ 418 (484)
T KOG0305|consen 356 SGLLATGGGSADRCIKFWNTNT-GARIDSVDTGSQ----------------VCSLIWSKKYKELLSTHGYSENQITLWKY 418 (484)
T ss_pred cCceEEcCCCcccEEEEEEcCC-CcEecccccCCc----------------eeeEEEcCCCCEEEEecCCCCCcEEEEec
Confidence 55777753 59999999997 777776654433 3489999998777654 36778999999
Q ss_pred CCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 428 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.+. .+...+.+|..+|..++++||+..+++|+.|.++++
T Consensus 419 ps~-~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrf 457 (484)
T KOG0305|consen 419 PSM-KLVAELLGHTSRVLYLALSPDGETIVTGAADETLRF 457 (484)
T ss_pred ccc-ceeeeecCCcceeEEEEECCCCCEEEEecccCcEEe
Confidence 985 555899999999999999999999999999999999
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.8e-25 Score=180.45 Aligned_cols=278 Identities=13% Similarity=0.157 Sum_probs=208.1
Q ss_pred ccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccc
Q 010256 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (514)
...+.|++|.|+|.++.|+.+++||++++|++...... ..+ .|.
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~-----------------------~~~-~~~------------ 54 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK-----------------------LKF-KHG------------ 54 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh-----------------------hhe-ecC------------
Confidence 34689999999999999999999999999998765421 111 123
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
.++.+.+|. +...+++|+.||.|+.+|+.+++...
T Consensus 55 ~plL~c~F~---d~~~~~~G~~dg~vr~~Dln~~~~~~------------------------------------------ 89 (323)
T KOG1036|consen 55 APLLDCAFA---DESTIVTGGLDGQVRRYDLNTGNEDQ------------------------------------------ 89 (323)
T ss_pred Cceeeeecc---CCceEEEeccCceEEEEEecCCccee------------------------------------------
Confidence 779999994 34589999999999999998765211
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
+..|..+|.++.+++....+++| .|++|++||.+......
T Consensus 90 ------------------------------------igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~--- 130 (323)
T KOG1036|consen 90 ------------------------------------IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVG--- 130 (323)
T ss_pred ------------------------------------eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccc---
Confidence 25688899999999988888888 99999999998522211
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
++. ....|.++... + +.|+.|+.|..+.+||+++.....+ ..+ ...+-.++++++-|
T Consensus 131 -----~~d-~~kkVy~~~v~--g-~~LvVg~~~r~v~iyDLRn~~~~~q---~re-----------S~lkyqtR~v~~~p 187 (323)
T KOG1036|consen 131 -----TFD-QGKKVYCMDVS--G-NRLVVGTSDRKVLIYDLRNLDEPFQ---RRE-----------SSLKYQTRCVALVP 187 (323)
T ss_pred -----ccc-cCceEEEEecc--C-CEEEEeecCceEEEEEcccccchhh---hcc-----------ccceeEEEEEEEec
Confidence 122 23477777764 3 6788899999999999998664321 000 11224689999999
Q ss_pred CCCEEEEEe-CCeEEEEEccCC---CCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEec
Q 010256 352 NGRHILSRD-YMTLKLWDINMD---SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (514)
Q Consensus 352 ~g~~l~~~~-~~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 427 (514)
++.-.++++ +|+|.+=.++.. ......++.|..... ..+.++.|.+++|+|-.+.+|||+.||.|.+||+
T Consensus 188 n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~------~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 188 NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEK------DTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDL 261 (323)
T ss_pred CCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccC------CceEEEEeceeEeccccceEEecCCCceEEEccC
Confidence 877666654 698887666541 134456777765432 2234556779999999999999999999999999
Q ss_pred CCCceeeeeecCCCcceeEEEECCCCCceeecC
Q 010256 428 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGS 460 (514)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s 460 (514)
.+.+ .+..+......|..++|+.+|..||.++
T Consensus 262 ~~rK-rl~q~~~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 262 FNRK-RLKQLAKYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred cchh-hhhhccCCCCceEEEEeccCCCeEEEEe
Confidence 9764 4467777778899999999999999986
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=200.98 Aligned_cols=325 Identities=16% Similarity=0.221 Sum_probs=230.4
Q ss_pred hhccccCcccccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCC
Q 010256 21 QVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHE 100 (514)
Q Consensus 21 ~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 100 (514)
|.|...-...+.+|++.|.|++..|.|.+||+|+.||+|+||.+.+++.+ ..
T Consensus 386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcv-----------------------r~----- 437 (733)
T KOG0650|consen 386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCV-----------------------RT----- 437 (733)
T ss_pred CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEE-----------------------EE-----
Confidence 45555555567899999999999999999999999999999999988753 22
Q ss_pred CccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeec
Q 010256 101 PEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM 180 (514)
Q Consensus 101 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 180 (514)
+...+.|.+|+|+|.++-..||++-.+. +.|-+..-|.........
T Consensus 438 --------~~~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~~t~------------------------- 483 (733)
T KOG0650|consen 438 --------VQFDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEVGPTK------------------------- 483 (733)
T ss_pred --------EeecceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhhcchh-------------------------
Confidence 2223669999999988766666665544 555554433111000000
Q ss_pred cCCCccccccCCCCCCcccC----CCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-c---
Q 010256 181 ANGGCGERNFGCASNDSSFP----PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D--- 252 (514)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~~~----~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~--- 252 (514)
+.++. ...+..+..|. -...+......+ ..-.|...|..+.|+..|.+|++. .
T Consensus 484 ---------------ell~~~~~~~~p~~~~~~W~-~~~~~e~~~~v~---~~I~~~k~i~~vtWHrkGDYlatV~~~~~ 544 (733)
T KOG0650|consen 484 ---------------ELLASAPNESEPDAAVVTWS-RASLDELEKGVC---IVIKHPKSIRQVTWHRKGDYLATVMPDSG 544 (733)
T ss_pred ---------------hhhhcCCCccCCcccceeec-hhhhhhhccceE---EEEecCCccceeeeecCCceEEEeccCCC
Confidence 00011 11223444444 111111111111 124677899999999999999986 2
Q ss_pred CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCC
Q 010256 253 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 332 (514)
Q Consensus 253 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 332 (514)
...|.|+++....... .+....+.|.++.|+|.. .+|++++ ...|++||+....++ +.+..
T Consensus 545 ~~~VliHQLSK~~sQ~--------PF~kskG~vq~v~FHPs~-p~lfVaT-q~~vRiYdL~kqelv----KkL~t----- 605 (733)
T KOG0650|consen 545 NKSVLIHQLSKRKSQS--------PFRKSKGLVQRVKFHPSK-PYLFVAT-QRSVRIYDLSKQELV----KKLLT----- 605 (733)
T ss_pred cceEEEEecccccccC--------chhhcCCceeEEEecCCC-ceEEEEe-ccceEEEehhHHHHH----HHHhc-----
Confidence 4678899987443321 344567889999999998 5666555 468999999876553 22111
Q ss_pred ccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCC
Q 010256 333 TRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG 411 (514)
Q Consensus 333 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 411 (514)
....|.+++.+|.|..|+.|+. +.+..||+....++.+++..|...+. +++|++.=.
T Consensus 606 -------g~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr---------------~Va~H~ryP 663 (733)
T KOG0650|consen 606 -------GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVR---------------SVAFHKRYP 663 (733)
T ss_pred -------CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhh---------------hhhhccccc
Confidence 1247999999999999999875 99999999987889999999987643 899999999
Q ss_pred EEEEEeCCCcEEEEecCCCc--------eeeeeecCCCcc----eeEEEECCCCCceeecCCCCeEEE
Q 010256 412 RVATGSYSNLFRVFGCSEGS--------AESTTLEASKNP----MRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 412 ~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~----v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
++++|+.||.+.||.-.-.. ..+..+.+|... |-...|+|...+|.+++.||+|++
T Consensus 664 Lfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirl 731 (733)
T KOG0650|consen 664 LFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRL 731 (733)
T ss_pred eeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEe
Confidence 99999999999998632111 123677888766 778889999999999999999998
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-25 Score=190.99 Aligned_cols=242 Identities=17% Similarity=0.196 Sum_probs=193.4
Q ss_pred cccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010256 229 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 307 (514)
Q Consensus 229 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i 307 (514)
+.||...|+++.++|+...++++ .|..|++|........ .....|..+|+.+..+|.| .+|++++.|++.
T Consensus 257 ~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~--------~~~~~h~~~V~~ls~h~tg-eYllsAs~d~~w 327 (506)
T KOG0289|consen 257 LKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP--------TSSRPHEEPVTGLSLHPTG-EYLLSASNDGTW 327 (506)
T ss_pred ccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc--------cccccccccceeeeeccCC-cEEEEecCCceE
Confidence 37899999999999999999999 8999999998755432 2456799999999999999 899999999999
Q ss_pred EEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccc
Q 010256 308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLR 386 (514)
Q Consensus 308 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~ 386 (514)
.+.|++++..... .-... ..-.+++.+|+|||..+.+|. |+.|+|||+.. +..+..+.+|.+.+
T Consensus 328 ~Fsd~~~g~~lt~---vs~~~-----------s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks-~~~~a~Fpght~~v 392 (506)
T KOG0289|consen 328 AFSDISSGSQLTV---VSDET-----------SDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS-QTNVAKFPGHTGPV 392 (506)
T ss_pred EEEEccCCcEEEE---Eeecc-----------ccceeEEeeEcCCceEEeccCCCceEEEEEcCC-ccccccCCCCCCce
Confidence 9999999876421 11100 113589999999999999986 59999999997 77889999998774
Q ss_pred cccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeec-CCCcceeEEEECCCCCceeecCCCCeE
Q 010256 387 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE-ASKNPMRRQVQTPSRPSRPLGSLSGVV 465 (514)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~s~d~~v 465 (514)
. .++|+.+|.||+++++|+.|++||++..+.. +++. .....+.++.|.+.|.+|+.++.|=.|
T Consensus 393 k---------------~i~FsENGY~Lat~add~~V~lwDLRKl~n~-kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~V 456 (506)
T KOG0289|consen 393 K---------------AISFSENGYWLATAADDGSVKLWDLRKLKNF-KTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQV 456 (506)
T ss_pred e---------------EEEeccCceEEEEEecCCeEEEEEehhhccc-ceeeccccccceeEEEcCCCCeEEeecceeEE
Confidence 3 9999999999999999999999999876433 3333 334479999999999999999999888
Q ss_pred EEee-CCCCCccccCCcccccccceEEEEEcCCCCEEEEEecCcEEEE
Q 010256 466 RRVK-GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY 512 (514)
Q Consensus 466 ~i~~-~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~i~ 512 (514)
++.. ..+.+ .......+|.+..+.+.|.....++++++.+.++-+
T Consensus 457 y~~~k~~k~W--~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 457 YICKKKTKSW--TEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRL 502 (506)
T ss_pred EEEecccccc--eeeehhhhcccccceeeecccceEEeeccchhheEE
Confidence 8843 11122 122234457788999999999999999886655443
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-24 Score=167.71 Aligned_cols=250 Identities=14% Similarity=0.167 Sum_probs=183.5
Q ss_pred ccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecC---CCcEEEEEec-C
Q 010256 230 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSSS-K 304 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~---~~~~l~~~~~-d 304 (514)
+.|.+.|.|.+|+|.|++|++| .|.+|++.-++....... .....+.-|.+.|+.++|..+ ++.+|++++. |
T Consensus 86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~---g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagd 162 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNAT---GHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGD 162 (350)
T ss_pred cccCccEEEEEecCccCeEEecCCCceEEEEeccccccccc---CcceeeeecCCceeeeEEecCCCcCceEEEecCCCc
Confidence 6789999999999999999999 999999987663321110 011245668999999999643 3356776654 6
Q ss_pred CeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeec-
Q 010256 305 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVH- 382 (514)
Q Consensus 305 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~- 382 (514)
..|.+-|...++.. ..+.+|++-|.++ ++-+|-++++|+. .+|++||++. ..++.++...
T Consensus 163 c~iy~tdc~~g~~~----------------~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv-~~~v~~l~~~~ 224 (350)
T KOG0641|consen 163 CKIYITDCGRGQGF----------------HALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRV-NSCVNTLDNDF 224 (350)
T ss_pred ceEEEeecCCCCcc----------------eeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeec-cceeeeccCcc
Confidence 66777777666542 2256777888766 3446889999875 9999999996 5566555321
Q ss_pred -cccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCC
Q 010256 383 -EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL 461 (514)
Q Consensus 383 -~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~ 461 (514)
.... .-..|.+++..|.|++|++|-.|....+||+..+ ...+.+..|...|+++.|+|...|++++|-
T Consensus 225 ~~~gl----------essavaav~vdpsgrll~sg~~dssc~lydirg~-r~iq~f~phsadir~vrfsp~a~yllt~sy 293 (350)
T KOG0641|consen 225 HDGGL----------ESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG-RMIQRFHPHSADIRCVRFSPGAHYLLTCSY 293 (350)
T ss_pred cCCCc----------ccceeEEEEECCCcceeeeccCCCceEEEEeeCC-ceeeeeCCCccceeEEEeCCCceEEEEecc
Confidence 1110 0113558999999999999999999999999976 556899999999999999999999999999
Q ss_pred CCeEEE--eeCCCCCccccCCc-ccccccceEEEEEcCCCCEEE-EEecCcEEEEe
Q 010256 462 SGVVRR--VKGADNSALDANGN-AFDFSMKLLHLAWHPSENSIA-CAASNSLYMYY 513 (514)
Q Consensus 462 d~~v~i--~~~~~~~~~~~~~~-~~~~~~~v~~~~~spd~~~l~-~~~~~~~~i~~ 513 (514)
|..|++ ++|..-. ++... .-+|...+..+.|+|..-.++ +..+....+|.
T Consensus 294 d~~ikltdlqgdla~--el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa 347 (350)
T KOG0641|consen 294 DMKIKLTDLQGDLAH--ELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWA 347 (350)
T ss_pred cceEEEeecccchhh--cCceEEEEeccCceEEEEecCccceeeeccCcceEEEec
Confidence 999999 3332111 22222 227899999999999875555 55577777874
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-25 Score=182.87 Aligned_cols=241 Identities=19% Similarity=0.317 Sum_probs=184.4
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
+-.|..+|++++.+ |.++|+|+.|-+|+|||+...... ..+-.|.
T Consensus 39 ~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~ql-----------------------g~ll~Ha---------- 83 (362)
T KOG0294|consen 39 FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQL-----------------------GILLSHA---------- 83 (362)
T ss_pred ccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhh-----------------------cceeccc----------
Confidence 45799999999987 999999999999999999876643 3455566
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
+.|+++.|.+......|++|+.||.|.+|++..-++...
T Consensus 84 --gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~s--------------------------------------- 122 (362)
T KOG0294|consen 84 --GSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKS--------------------------------------- 122 (362)
T ss_pred --cceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeee---------------------------------------
Confidence 889999996644444899999999999999875432111
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
+.+|.+.|+.++.+|.+++-++. .|+.+++|++-+++..+.
T Consensus 123 --------------------------------------lK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v 164 (362)
T KOG0294|consen 123 --------------------------------------LKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFV 164 (362)
T ss_pred --------------------------------------ecccccccceeEecCCCceEEEEcCCceeeeehhhcCcccee
Confidence 36888899999999999988877 999999999987765543
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
. . .....+.+.|+|.| ..|+.+..+ .|-+|.+.+..+. .....+ ..+.++.|
T Consensus 165 ~------~---L~~~at~v~w~~~G-d~F~v~~~~-~i~i~q~d~A~v~----~~i~~~-------------~r~l~~~~ 216 (362)
T KOG0294|consen 165 L------N---LKNKATLVSWSPQG-DHFVVSGRN-KIDIYQLDNASVF----REIENP-------------KRILCATF 216 (362)
T ss_pred e------c---cCCcceeeEEcCCC-CEEEEEecc-EEEEEecccHhHh----hhhhcc-------------ccceeeee
Confidence 2 1 23334559999999 677766654 7889998876542 111111 24666777
Q ss_pred ecCCCEEEEE-eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEE--EcCCCCEEEEEeCCCcEEEEe
Q 010256 350 ARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC--LSGDGGRVATGSYSNLFRVFG 426 (514)
Q Consensus 350 s~~g~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~s~~~~~l~s~~~dg~i~iwd 426 (514)
-. +..|++| +++.|.+||.+. ..++..+..|...+. ++. -.|++.+|++++.||.|++||
T Consensus 217 l~-~~~L~vG~d~~~i~~~D~ds-~~~~~~~~AH~~RVK---------------~i~~~~~~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 217 LD-GSELLVGGDNEWISLKDTDS-DTPLTEFLAHENRVK---------------DIASYTNPEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred cC-CceEEEecCCceEEEeccCC-Cccceeeecchhhee---------------eeEEEecCCceEEEEeccCceEEEEE
Confidence 64 4555555 559999999997 889999999987643 444 357889999999999999999
Q ss_pred cCCC
Q 010256 427 CSEG 430 (514)
Q Consensus 427 ~~~~ 430 (514)
+...
T Consensus 280 ~~~~ 283 (362)
T KOG0294|consen 280 IDME 283 (362)
T ss_pred cccc
Confidence 9865
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.5e-25 Score=179.83 Aligned_cols=272 Identities=13% Similarity=0.159 Sum_probs=197.5
Q ss_pred ccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCcc-EEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
++.|.+|+|+|..+ .++++++.|++||+|+++.. ....
T Consensus 27 ~DsIS~l~FSP~~~-~~~~A~SWD~tVR~wevq~~g~~~~---------------------------------------- 65 (347)
T KOG0647|consen 27 EDSISALAFSPQAD-NLLAAGSWDGTVRIWEVQNSGQLVP---------------------------------------- 65 (347)
T ss_pred ccchheeEeccccC-ceEEecccCCceEEEEEecCCcccc----------------------------------------
Confidence 38899999988443 47778899999999999762 2100
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
.....|.++|.+++|+.||..+++| .|+.+++||+.+++..
T Consensus 66 ------------------------------------ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~-- 107 (347)
T KOG0647|consen 66 ------------------------------------KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVS-- 107 (347)
T ss_pred ------------------------------------hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCee--
Confidence 0025688999999999999999999 9999999999977432
Q ss_pred eeccCCCcccccCCceEEEEEecCCC-cEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHC-NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (514)
.+..|.++|..+.|-+... ..|++|+.|.+|+.||+|.... +.+++.+ ..+.++.
T Consensus 108 -------~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p----v~t~~LP-------------eRvYa~D 163 (347)
T KOG0647|consen 108 -------QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP----VATLQLP-------------ERVYAAD 163 (347)
T ss_pred -------eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCe----eeeeecc-------------ceeeehh
Confidence 4567999999999987651 3899999999999999998665 3334433 2455554
Q ss_pred EecCCCEEEEE-eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEec
Q 010256 349 FARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (514)
Q Consensus 349 ~s~~g~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 427 (514)
.- ..+++.+ .+..|.+|+++.+....+.....-.. . +-+++.-+|....+.|+-+|++.|..+
T Consensus 164 v~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~-----------Q---~R~va~f~d~~~~alGsiEGrv~iq~i 227 (347)
T KOG0647|consen 164 VL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKW-----------Q---TRCVACFQDKDGFALGSIEGRVAIQYI 227 (347)
T ss_pred cc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccc-----------e---eeEEEEEecCCceEeeeecceEEEEec
Confidence 43 3355554 45899999997633333333222111 1 227887788888899999999999998
Q ss_pred CCCce-eeeeecCCC---------cceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCC
Q 010256 428 SEGSA-ESTTLEASK---------NPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPS 497 (514)
Q Consensus 428 ~~~~~-~~~~~~~~~---------~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd 497 (514)
..+.. ...+++.|+ .+|++++|+|....|++++.||++.+.+...-. -......+...|++.+|+.+
T Consensus 228 d~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~---kLk~s~~~~qpItcc~fn~~ 304 (347)
T KOG0647|consen 228 DDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDART---KLKTSETHPQPITCCSFNRN 304 (347)
T ss_pred CCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhh---hhhccCcCCCccceeEecCC
Confidence 87522 226677776 357889999999999999999999993322111 11122346889999999999
Q ss_pred CCEEEEEe
Q 010256 498 ENSIACAA 505 (514)
Q Consensus 498 ~~~l~~~~ 505 (514)
|.++|-+.
T Consensus 305 G~ifaYA~ 312 (347)
T KOG0647|consen 305 GSIFAYAL 312 (347)
T ss_pred CCEEEEEe
Confidence 99999654
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-25 Score=183.22 Aligned_cols=303 Identities=12% Similarity=0.153 Sum_probs=211.0
Q ss_pred eeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceeccccc
Q 010256 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS 173 (514)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 173 (514)
..+++|. +.|++++| +.||++|++++.|++|++|+++........-+. ......+
T Consensus 80 ~~LKgH~------------~~vt~~~F--sSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R-----------~nve~dh 134 (420)
T KOG2096|consen 80 SVLKGHK------------KEVTDVAF--SSDGKKLATISGDRSIRLWDVRDFENKEHRCIR-----------QNVEYDH 134 (420)
T ss_pred hhhhccC------------CceeeeEE--cCCCceeEEEeCCceEEEEecchhhhhhhhHhh-----------ccccCCC
Confidence 4578888 88999999 789999999999999999999874322111111 0011124
Q ss_pred CCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeecccccccccccc----ccccccCccCeEEEEECCCCCEEE
Q 010256 174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCR----RIYAHAHDYHINSISNNSDGETFI 249 (514)
Q Consensus 174 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~----~~~~~~h~~~v~~~~~~~~~~~l~ 249 (514)
++.+.|.||.+.+ ++..-...++++|.+....+........ ..+...|.-.+..+-....+.+|+
T Consensus 135 pT~V~FapDc~s~-----------vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~im 203 (420)
T KOG2096|consen 135 PTRVVFAPDCKSV-----------VVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIM 203 (420)
T ss_pred ceEEEECCCcceE-----------EEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEE
Confidence 4578999999876 2344466688888844444432221111 112345667777888888899999
Q ss_pred Ee-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcc--cccccccee
Q 010256 250 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL--CDTHSKLFE 326 (514)
Q Consensus 250 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~--~~~~~~~~~ 326 (514)
++ .|..|.+|+++ ++ ....+ ......-+..+.+|+| +++++++.---+++|.+--++. .+...+.
T Consensus 204 sas~dt~i~lw~lk-Gq-~L~~i-------dtnq~~n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rv-- 271 (420)
T KOG2096|consen 204 SASLDTKICLWDLK-GQ-LLQSI-------DTNQSSNYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRV-- 271 (420)
T ss_pred EecCCCcEEEEecC-Cc-eeeee-------ccccccccceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhh--
Confidence 99 89999999998 44 33322 2233444667899999 8999999999999999743221 1111122
Q ss_pred ccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCC------CCceeeee--eccccccccccccccCC
Q 010256 327 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMD------SGPVATFQ--VHEHLRPKLCDLYENDS 397 (514)
Q Consensus 327 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~------~~~~~~~~--~~~~~~~~~~~~~~~~~ 397 (514)
..+.+|.+.|..++|+++.+.+++.+ ||+++|||.+-. .+.+++.. .|.... .
T Consensus 272 --------f~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~---------~- 333 (420)
T KOG2096|consen 272 --------FSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGS---------E- 333 (420)
T ss_pred --------heeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCC---------C-
Confidence 23678999999999999999999976 599999998641 11122211 111000 0
Q ss_pred ccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 398 IFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 398 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
-..+..+|+|+.||.+. ...+++|..++++.....-..|...|.++.|+++|+++++++ |+.+++
T Consensus 334 ---p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv 398 (420)
T KOG2096|consen 334 ---PVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRV 398 (420)
T ss_pred ---ceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeee
Confidence 11689999999988654 357999999988666555568999999999999999999997 788888
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-23 Score=187.89 Aligned_cols=416 Identities=13% Similarity=0.150 Sum_probs=275.5
Q ss_pred ccccccccchhhccccCcccccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccc
Q 010256 11 AAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF 90 (514)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (514)
.+.-.+|++....... ..-...+.|.+++.+|.++.++.|+.||.+..++...++..
T Consensus 89 sg~i~EwDl~~lk~~~---~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~-------------------- 145 (691)
T KOG2048|consen 89 SGSITEWDLHTLKQKY---NIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKIT-------------------- 145 (691)
T ss_pred CceEEEEecccCceeE---EecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEE--------------------
Confidence 3456678887742211 11234689999999999999999999997777776655532
Q ss_pred eeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecc
Q 010256 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (514)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (514)
+.+.+.-.+ +.|.++.| ++++..+++|+.||.|++||+..+....................++
T Consensus 146 -~~r~l~rq~------------sRvLslsw--~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVW-- 208 (691)
T KOG2048|consen 146 -YKRSLMRQK------------SRVLSLSW--NPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVW-- 208 (691)
T ss_pred -EEeeccccc------------ceEEEEEe--cCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEE--
Confidence 334443333 78999999 6777789999999999999999988666554444333222334455
Q ss_pred cccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEE
Q 010256 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 250 (514)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 250 (514)
++.+..++.. ++|.+.|+|++|| . ..+...+.+ ..|...|.+++..+++.++.+
T Consensus 209 -----Sv~~Lrd~tI-------------~sgDS~G~V~FWd----~---~~gTLiqS~-~~h~adVl~Lav~~~~d~vfs 262 (691)
T KOG2048|consen 209 -----SVLFLRDSTI-------------ASGDSAGTVTFWD----S---IFGTLIQSH-SCHDADVLALAVADNEDRVFS 262 (691)
T ss_pred -----EEEEeecCcE-------------EEecCCceEEEEc----c---cCcchhhhh-hhhhcceeEEEEcCCCCeEEE
Confidence 5666666654 8999999999999 2 223333333 678999999999999888888
Q ss_pred e-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccc---------
Q 010256 251 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT--------- 320 (514)
Q Consensus 251 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~--------- 320 (514)
+ .|+.|..|...+.+..... . .....|...+.+++..++ .+++|+.|..+.+--.+..+....
T Consensus 263 aGvd~~ii~~~~~~~~~~wv~--~--~~r~~h~hdvrs~av~~~---~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~ 335 (691)
T KOG2048|consen 263 AGVDPKIIQYSLTTNKSEWVI--N--SRRDLHAHDVRSMAVIEN---ALISGGRDFTLAICSSREFKNMDHRQKNLFPAS 335 (691)
T ss_pred ccCCCceEEEEecCCccceee--e--ccccCCcccceeeeeecc---eEEecceeeEEEEccccccCchhhhcccccccc
Confidence 7 8999999988766543211 1 134567888999998874 788899998887765543211100
Q ss_pred ----------cccceeccCC---------------CC-ccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCC
Q 010256 321 ----------HSKLFEEQEA---------------PG-TRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSG 374 (514)
Q Consensus 321 ----------~~~~~~~~~~---------------~~-~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~ 374 (514)
....+..+.. +. .......-...|.+.+.||+|++++.+.-.+++||.+....
T Consensus 336 ~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~- 414 (691)
T KOG2048|consen 336 DRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDP- 414 (691)
T ss_pred ceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCc-
Confidence 0001101100 00 00111122357899999999999999887889999998633
Q ss_pred ceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe-CCCcEEEEecCCCceee-eee--cCCCcceeEEEEC
Q 010256 375 PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAES-TTL--EASKNPMRRQVQT 450 (514)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~-~~~--~~~~~~v~~~~~~ 450 (514)
.+.......-.. ...+...+.|+-|++.++.++ .+..+.++++.+..... ..+ +.-..+|..+..+
T Consensus 415 ~vk~~~v~~~~~----------~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~S 484 (691)
T KOG2048|consen 415 NVKVINVDDVPL----------ALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVS 484 (691)
T ss_pred ceeEEEeccchh----------hhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEc
Confidence 333322222110 011233688898999888777 77888888887653221 111 1345678999999
Q ss_pred CCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCC-CCEEEEE-ecCcEEEEe
Q 010256 451 PSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPS-ENSIACA-ASNSLYMYY 513 (514)
Q Consensus 451 ~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd-~~~l~~~-~~~~~~i~~ 513 (514)
|+|+|+|..+.++.|.+++........+.. .....|+.++++|. -+.|+++ ++++++-|.
T Consensus 485 sdG~yiaa~~t~g~I~v~nl~~~~~~~l~~---rln~~vTa~~~~~~~~~~lvvats~nQv~efd 546 (691)
T KOG2048|consen 485 SDGNYIAAISTRGQIFVYNLETLESHLLKV---RLNIDVTAAAFSPFVRNRLVVATSNNQVFEFD 546 (691)
T ss_pred CCCCEEEEEeccceEEEEEcccceeecchh---ccCcceeeeeccccccCcEEEEecCCeEEEEe
Confidence 999999999999999994433322111211 23478999999954 5556644 577777764
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-26 Score=206.24 Aligned_cols=267 Identities=19% Similarity=0.250 Sum_probs=203.2
Q ss_pred cCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCc
Q 010256 199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 277 (514)
Q Consensus 199 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 277 (514)
++|+.||.|++|+ ...........+... +..|...|+++....+++.|+++ .|-+|++|+..... ...+ .+
T Consensus 41 fTgGRDg~i~~W~-~~~d~~~~s~~~~as-me~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-~~c~-----st 112 (735)
T KOG0308|consen 41 FTGGRDGIIRLWS-VTQDSNEPSTPYIAS-MEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-TFCM-----ST 112 (735)
T ss_pred EecCCCceEEEec-cccccCCcccchhhh-hhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-chhH-----hh
Confidence 9999999999999 333222222222333 37899999999999999999999 99999999998654 1111 26
Q ss_pred ccccCCceEEEEE-ecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceee-ccccceeEEEEecCCCE
Q 010256 278 MEDLTEVITSAEF-HPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFT-EIIASISDIKFARNGRH 355 (514)
Q Consensus 278 ~~~~~~~i~~v~~-~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~g~~ 355 (514)
+..|.+.|.++++ .++. .++|+|+.|+.|.+||+.++.. +.+..++... ...+. ++..+|++++.++.|..
T Consensus 113 ir~H~DYVkcla~~ak~~-~lvaSgGLD~~IflWDin~~~~--~l~~s~n~~t----~~sl~sG~k~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 113 IRTHKDYVKCLAYIAKNN-ELVASGGLDRKIFLWDINTGTA--TLVASFNNVT----VNSLGSGPKDSIYSLAMNQTGTI 185 (735)
T ss_pred hhcccchheeeeecccCc-eeEEecCCCccEEEEEccCcch--hhhhhccccc----cccCCCCCccceeeeecCCcceE
Confidence 7789999999999 6776 8999999999999999998743 1122222211 12223 78889999999999988
Q ss_pred EEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceee
Q 010256 356 ILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES 434 (514)
Q Consensus 356 l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 434 (514)
+++|+- +.+++||.++ .+.+..+.+|...+. .+..++||..+++++.||+|++||+....++
T Consensus 186 ivsGgtek~lr~wDprt-~~kimkLrGHTdNVr---------------~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl- 248 (735)
T KOG0308|consen 186 IVSGGTEKDLRLWDPRT-CKKIMKLRGHTDNVR---------------VLLVNDDGTRLLSASSDGTIRLWDLGQQRCL- 248 (735)
T ss_pred EEecCcccceEEecccc-ccceeeeeccccceE---------------EEEEcCCCCeEeecCCCceEEeeecccccee-
Confidence 888765 9999999998 888888889987644 8899999999999999999999999876554
Q ss_pred eeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCE
Q 010256 435 TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENS 500 (514)
Q Consensus 435 ~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~ 500 (514)
.++..|.+.|+++..+|+-..+.+|+.||.|...+-..+.. ..........|..+..+...+-
T Consensus 249 ~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~---~tlick~daPv~~l~~~~~~~~ 311 (735)
T KOG0308|consen 249 ATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAK---STLICKEDAPVLKLHLHEHDNS 311 (735)
T ss_pred eeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchh---heEeecCCCchhhhhhccccCC
Confidence 78999999999999999999999999999999932222211 1112223455555555544333
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=188.10 Aligned_cols=288 Identities=16% Similarity=0.184 Sum_probs=210.8
Q ss_pred ccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEE-EEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVK-KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
.-+|.++++ ++++.+.++++.+++|.-|++.+++.. .+..-. .
T Consensus 142 ~~s~~~val--s~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~----------------------------e------ 185 (479)
T KOG0299|consen 142 QLSVTSVAL--SPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD----------------------------E------ 185 (479)
T ss_pred cCcceEEEe--eccccceeecCCCcceeeeehhcCcccccccccc----------------------------h------
Confidence 378999999 677789999999999999999988632 111100 0
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
+ + . .. ..+.+....+|...+.+++.++||++|++| .|..|.||+.++.+...
T Consensus 186 --------v-------~------k-~~----~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~- 238 (479)
T KOG0299|consen 186 --------V-------L------K-SH----GNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVK- 238 (479)
T ss_pred --------h-------h------h-hc----cCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhh-
Confidence 0 0 0 00 000000003788999999999999999999 89999999999776553
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
.+.+|.+.|.+++|-..- +.+++++.|+.+++|++.....+ . ++.+|.+.|.++..
T Consensus 239 -------~~~ghr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~~~s~v----e------------tlyGHqd~v~~Ida 294 (479)
T KOG0299|consen 239 -------VFKGHRGAVSSLAFRKGT-SELYSASADRSVKVWSIDQLSYV----E------------TLYGHQDGVLGIDA 294 (479)
T ss_pred -------cccccccceeeeeeecCc-cceeeeecCCceEEEehhHhHHH----H------------HHhCCccceeeech
Confidence 578999999999998765 78999999999999999876542 2 25667789999998
Q ss_pred ecCCCEEEEE-eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecC
Q 010256 350 ARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 350 s~~g~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 428 (514)
...++.+-+| .|+++++|++.. .....+.++..... +++|- +...+++|+.+|.|.+|++.
T Consensus 295 L~reR~vtVGgrDrT~rlwKi~e--esqlifrg~~~sid---------------cv~~I-n~~HfvsGSdnG~IaLWs~~ 356 (479)
T KOG0299|consen 295 LSRERCVTVGGRDRTVRLWKIPE--ESQLIFRGGEGSID---------------CVAFI-NDEHFVSGSDNGSIALWSLL 356 (479)
T ss_pred hcccceEEeccccceeEEEeccc--cceeeeeCCCCCee---------------eEEEe-cccceeeccCCceEEEeeec
Confidence 8888888776 579999999953 33444555554322 77876 45678899999999999998
Q ss_pred CCceeeeeecCC-----------CcceeEEEECCCCCceeecCCCCeEEEeeCCCC-CccccCCcccccccceEEEEEcC
Q 010256 429 EGSAESTTLEAS-----------KNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADN-SALDANGNAFDFSMKLLHLAWHP 496 (514)
Q Consensus 429 ~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~-~~~~~~~~~~~~~~~v~~~~~sp 496 (514)
..+.+...-..| ..+|++++..|...++++||.+|.||++.-... ....+. ..+...+-|++++|++
T Consensus 357 KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l-~~ls~~GfVNsl~f~~ 435 (479)
T KOG0299|consen 357 KKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLL-YSLSLVGFVNSLAFSN 435 (479)
T ss_pred ccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcccccee-eecccccEEEEEEEcc
Confidence 764443222222 237899999999999999999999999222111 110111 1224678999999999
Q ss_pred CCCEEEEEe
Q 010256 497 SENSIACAA 505 (514)
Q Consensus 497 d~~~l~~~~ 505 (514)
+|++|++|.
T Consensus 436 sgk~ivagi 444 (479)
T KOG0299|consen 436 SGKRIVAGI 444 (479)
T ss_pred CCCEEEEec
Confidence 999888765
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-25 Score=190.27 Aligned_cols=295 Identities=15% Similarity=0.167 Sum_probs=209.4
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccc
Q 010256 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (514)
.+.|+||.|+|....|++++.||+++||.++..... .+..+.-.. .+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~---------------------~lqS~~l~~------------fP 259 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP---------------------KLQSIHLEK------------FP 259 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh---------------------hheeeeecc------------Cc
Confidence 478999999999999999999999999999765431 112222122 56
Q ss_pred eeEEEEeeCCCCc-EEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCC
Q 010256 115 INKIRWCQSANSA-LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (514)
Q Consensus 115 v~~i~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (514)
|.+.+|. ++|. .+++++.......||+.+.+..++......+.. .+. ....+++++.+
T Consensus 260 i~~a~f~--p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~-----~~e-------~FeVShd~~fi------- 318 (514)
T KOG2055|consen 260 IQKAEFA--PNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEK-----SME-------RFEVSHDSNFI------- 318 (514)
T ss_pred cceeeec--CCCceEEEecccceEEEEeeccccccccccCCCCcccc-----hhh-------eeEecCCCCeE-------
Confidence 9999995 4666 888999999999999999887666554433211 111 45667888887
Q ss_pred CCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeec
Q 010256 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (514)
Q Consensus 194 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~ 272 (514)
+..+..|.|.+.. ..+.+. . .. ..-.+.|.+++|+.|++.|+++ .+|.|.+||++......+..+
T Consensus 319 -----a~~G~~G~I~lLh-akT~el---i---~s--~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D 384 (514)
T KOG2055|consen 319 -----AIAGNNGHIHLLH-AKTKEL---I---TS--FKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD 384 (514)
T ss_pred -----EEcccCceEEeeh-hhhhhh---h---he--eeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee
Confidence 9999999999754 111111 1 11 1234778999999999988877 999999999997644433311
Q ss_pred cCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecC
Q 010256 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (514)
Q Consensus 273 ~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 352 (514)
+ ..-.=++++.++++ .+||+|+..|.|.|||..+-.. ...|.+...+......|++++|+||
T Consensus 385 ------~-G~v~gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~~~----------s~~PkPik~~dNLtt~Itsl~Fn~d 446 (514)
T KOG2055|consen 385 ------D-GSVHGTSLCISLNG-SYLATGSDSGIVNIYDGNSCFA----------STNPKPIKTVDNLTTAITSLQFNHD 446 (514)
T ss_pred ------c-CccceeeeeecCCC-ceEEeccCcceEEEeccchhhc----------cCCCCchhhhhhhheeeeeeeeCcc
Confidence 1 11123577888998 8999999999999999765321 1112223334444578999999999
Q ss_pred CCEEEEEeC---CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecC
Q 010256 353 GRHILSRDY---MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 353 g~~l~~~~~---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 428 (514)
++.|+.++. ..+++-.+.+ ......++... ..+.-|++++|||.|.+||.|..+|++.+|.+.
T Consensus 447 ~qiLAiaS~~~knalrLVHvPS-~TVFsNfP~~n------------~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 447 AQILAIASRVKKNALRLVHVPS-CTVFSNFPTSN------------TKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhhhhhhhccccceEEEeccc-eeeeccCCCCC------------CcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 999998753 6788877764 33333333222 333446699999999999999999999999875
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.5e-25 Score=198.86 Aligned_cols=273 Identities=14% Similarity=0.241 Sum_probs=218.7
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|...|..+++.+.. .+++++.||++++|+-..++.. -...+.+|.
T Consensus 10 l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l---------------------~~~~~~~~~---------- 57 (745)
T KOG0301|consen 10 LEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYL---------------------ETHAFEGPK---------- 57 (745)
T ss_pred eccCccchheeEecCCe-EEeecCCCCceeeeeccCcccc---------------------cceecccCc----------
Confidence 45899999999987654 8899999999999997655432 223455555
Q ss_pred cccceeE-EEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 111 IEEKINK-IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 111 ~~~~v~~-i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
+-|.. +++.+ .++..+++|+.|.+|.+|...+.....
T Consensus 58 --g~i~~~i~y~e-~~~~~l~~g~~D~~i~v~~~~~~~P~~--------------------------------------- 95 (745)
T KOG0301|consen 58 --GFIANSICYAE-SDKGRLVVGGMDTTIIVFKLSQAEPLY--------------------------------------- 95 (745)
T ss_pred --ceeeccceecc-ccCcceEeecccceEEEEecCCCCchh---------------------------------------
Confidence 55666 88866 455579999999999999876653211
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCcee
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 268 (514)
++.+|...|.+++...++. +++| .|.++++|-...- ..
T Consensus 96 --------------------------------------~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l--~~ 134 (745)
T KOG0301|consen 96 --------------------------------------TLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGEL--VY 134 (745)
T ss_pred --------------------------------------hhhccccceeeeecCCcCc-eEecccccceEEecchhh--hc
Confidence 1489999999999888887 8888 8999999987522 21
Q ss_pred eeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEE
Q 010256 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (514)
Q Consensus 269 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (514)
.+++|...|++++.-|.+ .+++|+.|..|++|.- ++. .+ +|.+|...|+.++
T Consensus 135 --------~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~--~~~----l~------------tf~gHtD~VRgL~ 186 (745)
T KOG0301|consen 135 --------SLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKG--GTL----LK------------TFSGHTDCVRGLA 186 (745)
T ss_pred --------ccCCcchheeeeeecCCC--cEEeccCcceeeeccC--Cch----hh------------hhccchhheeeeE
Confidence 578999999999999986 8999999999999985 333 23 3666778999999
Q ss_pred EecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecC
Q 010256 349 FARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 349 ~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 428 (514)
+-+++.++-++.||.|++|++. +..+.++.+|... +++++..+++..+++++.|++++||+..
T Consensus 187 vl~~~~flScsNDg~Ir~w~~~--ge~l~~~~ghtn~---------------vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 187 VLDDSHFLSCSNDGSIRLWDLD--GEVLLEMHGHTNF---------------VYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred EecCCCeEeecCCceEEEEecc--CceeeeeeccceE---------------EEEEEecCCCCeEEEecCCceEEEeecC
Confidence 9999888888888999999995 8999999999876 3488888889999999999999999987
Q ss_pred CCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 429 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 429 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
...+.+.-....++++.+.++|. +++|+.||.||+
T Consensus 250 ---e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrV 284 (745)
T KOG0301|consen 250 ---ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRV 284 (745)
T ss_pred ---ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEE
Confidence 23366666677899998887765 567778999999
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-25 Score=184.22 Aligned_cols=297 Identities=16% Similarity=0.268 Sum_probs=222.3
Q ss_pred ceeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceec
Q 010256 90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG 169 (514)
Q Consensus 90 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 169 (514)
+++.+++.||. +.|..++-. .....+.+++.|.+.+||.++++++....
T Consensus 138 ~~lvre~~GHk------------DGiW~Vaa~--~tqpi~gtASADhTA~iWs~Esg~CL~~Y----------------- 186 (481)
T KOG0300|consen 138 FRLVRELEGHK------------DGIWHVAAD--STQPICGTASADHTARIWSLESGACLATY----------------- 186 (481)
T ss_pred Eeehhhhcccc------------cceeeehhh--cCCcceeecccccceeEEeeccccceeee-----------------
Confidence 34556677887 889988874 33347888999999999999988754332
Q ss_pred ccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEE
Q 010256 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 249 (514)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 249 (514)
.+|.+.|+++.|++.+.+++
T Consensus 187 ------------------------------------------------------------~GH~GSVNsikfh~s~~L~l 206 (481)
T KOG0300|consen 187 ------------------------------------------------------------TGHTGSVNSIKFHNSGLLLL 206 (481)
T ss_pred ------------------------------------------------------------cccccceeeEEeccccceEE
Confidence 56666677777777776666
Q ss_pred Ee-cCCeEEEEeccC----CC----------------------------ceeeeeccCCCcccccCCceEEEEEecCCCc
Q 010256 250 SA-DDLRINLWNLEI----SN----------------------------QSFNIVDVKPANMEDLTEVITSAEFHPTHCN 296 (514)
Q Consensus 250 s~-~d~~i~iwd~~~----~~----------------------------~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~ 296 (514)
++ .|++..||...- ++ ..-..+......+.+|.+.|.+..|...| .
T Consensus 207 TaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg-~ 285 (481)
T KOG0300|consen 207 TASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG-Q 285 (481)
T ss_pred EccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc-c
Confidence 66 666666665110 00 00000111123577899999999999888 8
Q ss_pred EEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCc
Q 010256 297 MLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGP 375 (514)
Q Consensus 297 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~ 375 (514)
.+++++.|++-.+||++++..+ ..+.+|....+.+.-+|..+++++.+. .+.++||++..-..
T Consensus 286 Q~vTaSWDRTAnlwDVEtge~v----------------~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~s 349 (481)
T KOG0300|consen 286 QMVTASWDRTANLWDVETGEVV----------------NILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQS 349 (481)
T ss_pred eeeeeeccccceeeeeccCcee----------------ccccCcchhccccccCCcceEEEEeccCceeEeccchhhcce
Confidence 9999999999999999999873 336778889999999999999999764 99999999864556
Q ss_pred eeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCc
Q 010256 376 VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPS 455 (514)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 455 (514)
+..+++|... |+++.|..|.+ +++|++|.+|+|||+++....+.++.. .++++.++.+..++.
T Consensus 350 V~VFQGHtdt---------------VTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~i 412 (481)
T KOG0300|consen 350 VAVFQGHTDT---------------VTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPI 412 (481)
T ss_pred eeeecccccc---------------eeEEEEecCCc-eeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCCce
Confidence 7888999876 44889987655 789999999999999987655555543 467889999999999
Q ss_pred eeecCCCCeEEE--eeCCCCCccccCCc-ccccccceEEEEEcCC---CCEEEEEecCcEEEEe
Q 010256 456 RPLGSLSGVVRR--VKGADNSALDANGN-AFDFSMKLLHLAWHPS---ENSIACAASNSLYMYY 513 (514)
Q Consensus 456 l~s~s~d~~v~i--~~~~~~~~~~~~~~-~~~~~~~v~~~~~spd---~~~l~~~~~~~~~i~~ 513 (514)
||.--.++.||+ ++|.++. .+... ..+|...|.+++|..+ -+++.+|-+..++-|.
T Consensus 413 IAiPhDNRqvRlfDlnG~Rla--RlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 413 IAIPHDNRQVRLFDLNGNRLA--RLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred EEeccCCceEEEEecCCCccc--cCCcccccccceeeeeeeccccCcccccccccccceeeeeE
Confidence 999999999999 5666665 23322 3368999999999765 4566677788777775
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-26 Score=194.93 Aligned_cols=274 Identities=21% Similarity=0.296 Sum_probs=205.1
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
+.|..+.|.+ +...|++++.|..|++|++...+....
T Consensus 176 gev~~v~~l~--~sdtlatgg~Dr~Ik~W~v~~~k~~~~----------------------------------------- 212 (459)
T KOG0288|consen 176 GEVHDVEFLR--NSDTLATGGSDRIIKLWNVLGEKSELI----------------------------------------- 212 (459)
T ss_pred cccceeEEcc--Ccchhhhcchhhhhhhhhcccchhhhh-----------------------------------------
Confidence 7899999954 434899999999999999876541110
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
..+.+..+.|+++.|.++++.++++ .|+.+++|++...+..
T Consensus 213 ----------------------------------~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~---- 254 (459)
T KOG0288|consen 213 ----------------------------------STLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLR---- 254 (459)
T ss_pred ----------------------------------hhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhh----
Confidence 0024555789999999999998888 9999999999855443
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
.++.+|.+.|+++.|.... ..+++|+.|.+|++||+....+. +++-.. +.+..|..+
T Consensus 255 ----~TLsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~----kt~l~~-------------S~cnDI~~~- 311 (459)
T KOG0288|consen 255 ----HTLSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCS----KTVLPG-------------SQCNDIVCS- 311 (459)
T ss_pred ----hhhcccccceeeehhhccc-cceeeccccchhhhhhhhhhhee----cccccc-------------ccccceEec-
Confidence 2788999999999999887 56999999999999999886543 211111 245555555
Q ss_pred CCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 352 NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 352 ~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
...+++|. |++|++||.+. ..+......+.. |+++..+++|..|.+++.|..+.+.|+.+.
T Consensus 312 -~~~~~SgH~DkkvRfwD~Rs-~~~~~sv~~gg~----------------vtSl~ls~~g~~lLsssRDdtl~viDlRt~ 373 (459)
T KOG0288|consen 312 -ISDVISGHFDKKVRFWDIRS-ADKTRSVPLGGR----------------VTSLDLSMDGLELLSSSRDDTLKVIDLRTK 373 (459)
T ss_pred -ceeeeecccccceEEEeccC-CceeeEeecCcc----------------eeeEeeccCCeEEeeecCCCceeeeecccc
Confidence 45667775 58999999997 777777776653 459999999999999999999999999876
Q ss_pred ceeeeeecCC----CcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCccc-ccc-cceEEEEEcCCCCEEEEE
Q 010256 431 SAESTTLEAS----KNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAF-DFS-MKLLHLAWHPSENSIACA 504 (514)
Q Consensus 431 ~~~~~~~~~~----~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~-~~~-~~v~~~~~spd~~~l~~~ 504 (514)
....++... ....+.+.|||++.|+|+||.||.|+| |......+....- .+. ..|++++|+|.|..|+.+
T Consensus 374 -eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~i---W~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsa 449 (459)
T KOG0288|consen 374 -EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYI---WSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSA 449 (459)
T ss_pred -cEEEEeeccccccccccceeEECCCCceeeeccCCCcEEE---EEccCceEEEEeccCCCCcceEEEEEcCCCchhhcc
Confidence 333444421 234789999999999999999999999 2222211111111 122 279999999999999988
Q ss_pred e-cCcEEEE
Q 010256 505 A-SNSLYMY 512 (514)
Q Consensus 505 ~-~~~~~i~ 512 (514)
+ ...+.+|
T Consensus 450 dk~~~v~lW 458 (459)
T KOG0288|consen 450 DKQKAVTLW 458 (459)
T ss_pred cCCcceEec
Confidence 7 5556666
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.1e-25 Score=189.68 Aligned_cols=268 Identities=16% Similarity=0.239 Sum_probs=187.7
Q ss_pred ccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeecc
Q 010256 102 EFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA 181 (514)
Q Consensus 102 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 181 (514)
.+.....+.+++.|+.+++.|... .++++.+..+.|.|||...-.-...
T Consensus 114 ~v~i~~~i~h~gEVnRaRymPQnp-~iVAt~t~~~dv~Vfd~tk~~s~~~------------------------------ 162 (422)
T KOG0264|consen 114 KVEISQKINHDGEVNRARYMPQNP-NIVATKTSSGDVYVFDYTKHPSKPK------------------------------ 162 (422)
T ss_pred ceEEEEeccCCccchhhhhCCCCC-cEEEecCCCCCEEEEEeccCCCccc------------------------------
Confidence 333444455568899999988544 5788889999999999865321110
Q ss_pred CCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCC-CEEEEe-cCCeEEEE
Q 010256 182 NGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLW 259 (514)
Q Consensus 182 ~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iw 259 (514)
.++.....++ +.+|...-.+++|++.. -.|+++ +|++|.+|
T Consensus 163 -----------------~~~~~~Pdl~--------------------L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lw 205 (422)
T KOG0264|consen 163 -----------------ASGECRPDLR--------------------LKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLW 205 (422)
T ss_pred -----------------ccccCCCceE--------------------EEeecccccccccccccceeEeeccCCCcEEEE
Confidence 1111111111 36777777789999863 356666 99999999
Q ss_pred eccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeec
Q 010256 260 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 339 (514)
Q Consensus 260 d~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (514)
|+......-..+ .....+.+|...|..++|+|....+|++++.|+.+.|||+|++.. +. .....+
T Consensus 206 di~~~~~~~~~~-~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~--~~------------~~~~~a 270 (422)
T KOG0264|consen 206 DINAESKEDKVV-DPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS--KP------------SHSVKA 270 (422)
T ss_pred eccccccCCccc-cceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC--CC------------cccccc
Confidence 998654421111 111356889999999999998878999999999999999997411 11 123456
Q ss_pred cccceeEEEEecCCC-EEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCC-CEEEEE
Q 010256 340 IIASISDIKFARNGR-HILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATG 416 (514)
Q Consensus 340 ~~~~i~~~~~s~~g~-~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~ 416 (514)
|.+.|.+++|+|-+. .||+|+ |++|++||+++-.+++.++.+|... |+.+.|+|.. ..||++
T Consensus 271 h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~de---------------v~~V~WSPh~etvLASS 335 (422)
T KOG0264|consen 271 HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDE---------------VFQVEWSPHNETVLASS 335 (422)
T ss_pred cCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcc---------------eEEEEeCCCCCceeEec
Confidence 779999999999554 555665 6999999999878899999999876 4599999965 578899
Q ss_pred eCCCcEEEEecCCCceee-------------eeecCCCcceeEEEECCCCCc-eeecCCCCeEEE
Q 010256 417 SYSNLFRVFGCSEGSAES-------------TTLEASKNPMRRQVQTPSRPS-RPLGSLSGVVRR 467 (514)
Q Consensus 417 ~~dg~i~iwd~~~~~~~~-------------~~~~~~~~~v~~~~~~~~~~~-l~s~s~d~~v~i 467 (514)
+.|+++.|||+..-.... .+-.||+..|..+.|+|..++ |+|.++|+.+.|
T Consensus 336 g~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqI 400 (422)
T KOG0264|consen 336 GTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQI 400 (422)
T ss_pred ccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEE
Confidence 999999999997532221 223356666666666666554 455556666665
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-24 Score=176.95 Aligned_cols=289 Identities=21% Similarity=0.304 Sum_probs=199.6
Q ss_pred ccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccc
Q 010256 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (514)
.|.. -.|+.||+.|.+||+|+.||.|.|||+.+.. ..+.+.+|-
T Consensus 22 d~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-----------------------iar~lsaH~------------ 65 (405)
T KOG1273|consen 22 DNPL-AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-----------------------IARMLSAHV------------ 65 (405)
T ss_pred cCCc-cceEEeccCcceeeeeccCCcEEEEEccccc-----------------------hhhhhhccc------------
Confidence 3344 7899999999999999999999999998765 335678888
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
.+|.+++| +++|+.|++++.|..|++||+..|.+.....+.
T Consensus 66 ~pi~sl~W--S~dgr~LltsS~D~si~lwDl~~gs~l~rirf~------------------------------------- 106 (405)
T KOG1273|consen 66 RPITSLCW--SRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD------------------------------------- 106 (405)
T ss_pred cceeEEEe--cCCCCEeeeecCCceeEEEeccCCCceeEEEcc-------------------------------------
Confidence 88999999 789999999999999999999988754443332
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCC--CEEEEecCCeEEEEeccCCCceeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG--ETFISADDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~~d~~i~iwd~~~~~~~~~~ 270 (514)
.+|+...|+|.. +.+++-.+..-.+-++..+.. ..
T Consensus 107 -----------------------------------------spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h--~~ 143 (405)
T KOG1273|consen 107 -----------------------------------------SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH--SV 143 (405)
T ss_pred -----------------------------------------CccceeeeccccCCeEEEEEecCCcEEEEecCCce--ee
Confidence 456667777643 223332333344444442221 11
Q ss_pred eccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEe
Q 010256 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (514)
Q Consensus 271 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 350 (514)
+...+ -........+..|.+.| +++++|...|.+.++|..+.+++ ..++... ...|..+.++
T Consensus 144 Lp~d~--d~dln~sas~~~fdr~g-~yIitGtsKGkllv~~a~t~e~v----as~rits-----------~~~IK~I~~s 205 (405)
T KOG1273|consen 144 LPKDD--DGDLNSSASHGVFDRRG-KYIITGTSKGKLLVYDAETLECV----ASFRITS-----------VQAIKQIIVS 205 (405)
T ss_pred ccCCC--ccccccccccccccCCC-CEEEEecCcceEEEEecchheee----eeeeech-----------heeeeEEEEe
Confidence 11000 00012222344688988 89999999999999999987663 2222211 1468999999
Q ss_pred cCCCEEEEE-eCCeEEEEEccC---CCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeC-CCcEEEE
Q 010256 351 RNGRHILSR-DYMTLKLWDINM---DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SNLFRVF 425 (514)
Q Consensus 351 ~~g~~l~~~-~~~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~iw 425 (514)
..|++|+.. +|..||.|+++. .++-...-..|. ...-+....++ +++|+.+|.|++.++. -..++||
T Consensus 206 ~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K-~qDvVNk~~Wk-------~ccfs~dgeYv~a~s~~aHaLYIW 277 (405)
T KOG1273|consen 206 RKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHK-LQDVVNKLQWK-------KCCFSGDGEYVCAGSARAHALYIW 277 (405)
T ss_pred ccCcEEEEecCCceEEEEehhhhcccCccCCcChhHH-HHHHHhhhhhh-------heeecCCccEEEeccccceeEEEE
Confidence 999999985 679999999862 111000000000 00011111222 7999999999987774 4579999
Q ss_pred ecCCCceeeeeecCCC-cceeEEEECCCCCceeecCCCCeEEE
Q 010256 426 GCSEGSAESTTLEASK-NPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 426 d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
....| .+.+.|+|.. ...-.+.|+|-...+++. ..|.|++
T Consensus 278 E~~~G-sLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~i 318 (405)
T KOG1273|consen 278 EKSIG-SLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYI 318 (405)
T ss_pred ecCCc-ceeeeecCCchhheeecccccceeeeeec-cCCceEE
Confidence 99887 6668999888 667788999999999988 7888888
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-25 Score=193.54 Aligned_cols=286 Identities=11% Similarity=0.122 Sum_probs=212.8
Q ss_pred cccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEE-EEEeeccCCCccccCCcceecccccCCceeeccCC
Q 010256 105 YLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV-KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183 (514)
Q Consensus 105 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 183 (514)
.+.++.|.+-|.++.. +...+++++|+. |.|+|||+....- ..+..+. +...+....+....|||
T Consensus 412 q~~tL~HGEvVcAvtI--S~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLd-----------cl~rdnyiRSckL~pdg 477 (705)
T KOG0639|consen 412 QINTLAHGEVVCAVTI--SNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLD-----------CLNRDNYIRSCKLLPDG 477 (705)
T ss_pred hhhhhccCcEEEEEEe--cCCcceeEecCC-CeEEEeeccCCCCCCcccccc-----------ccCcccceeeeEecCCC
Confidence 3556677788888888 455567888775 8999999976421 1111111 11111222377889999
Q ss_pred CccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEecc
Q 010256 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLE 262 (514)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~ 262 (514)
+.| ++|++-.++.||| +....... +.. +........+++.+||.+..+++ .||.|.|||+.
T Consensus 478 rtL------------ivGGeastlsiWD-LAapTpri----kae-ltssapaCyALa~spDakvcFsccsdGnI~vwDLh 539 (705)
T KOG0639|consen 478 RTL------------IVGGEASTLSIWD-LAAPTPRI----KAE-LTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLH 539 (705)
T ss_pred ceE------------Eeccccceeeeee-ccCCCcch----hhh-cCCcchhhhhhhcCCccceeeeeccCCcEEEEEcc
Confidence 999 9999999999999 44322211 111 13333567789999999999988 99999999998
Q ss_pred CCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecccc
Q 010256 263 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (514)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (514)
+.. .++ .+++|.+.+.||..+++| ..|-+|+-|.+||.||++.+....++ . ..+
T Consensus 540 nq~-~Vr-------qfqGhtDGascIdis~dG-tklWTGGlDntvRcWDlregrqlqqh--d---------------F~S 593 (705)
T KOG0639|consen 540 NQT-LVR-------QFQGHTDGASCIDISKDG-TKLWTGGLDNTVRCWDLREGRQLQQH--D---------------FSS 593 (705)
T ss_pred cce-eee-------cccCCCCCceeEEecCCC-ceeecCCCccceeehhhhhhhhhhhh--h---------------hhh
Confidence 443 332 689999999999999999 89999999999999999998764321 1 125
Q ss_pred ceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCc
Q 010256 343 SISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 421 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 421 (514)
.|.++..+|++.+|+.|-. +.+.|-... +.....+..|+.. |.++.|.+-|+++++.+.|+.
T Consensus 594 QIfSLg~cP~~dWlavGMens~vevlh~s--kp~kyqlhlheSc---------------VLSlKFa~cGkwfvStGkDnl 656 (705)
T KOG0639|consen 594 QIFSLGYCPTGDWLAVGMENSNVEVLHTS--KPEKYQLHLHESC---------------VLSLKFAYCGKWFVSTGKDNL 656 (705)
T ss_pred hheecccCCCccceeeecccCcEEEEecC--CccceeecccccE---------------EEEEEecccCceeeecCchhh
Confidence 7999999999999999855 788887765 3444555555543 459999999999999999999
Q ss_pred EEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 422 FRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 422 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+..|....|..+.+ ..-.++|.+..++.|.+|+++||.|....+
T Consensus 657 LnawrtPyGasiFq--skE~SsVlsCDIS~ddkyIVTGSGdkkATV 700 (705)
T KOG0639|consen 657 LNAWRTPYGASIFQ--SKESSSVLSCDISFDDKYIVTGSGDKKATV 700 (705)
T ss_pred hhhccCccccceee--ccccCcceeeeeccCceEEEecCCCcceEE
Confidence 99999988754322 233578999999999999999999876555
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-23 Score=173.20 Aligned_cols=270 Identities=12% Similarity=0.217 Sum_probs=204.8
Q ss_pred eEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEEEeeCCCCcE
Q 010256 49 HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSAL 128 (514)
Q Consensus 49 ~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~ 128 (514)
.+++|+....|.-+++.-.+. +..-+..|.+..+-.++.|. .+|++++. ++.+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~-----------~~~~s~~~~l~~lF~~~aH~------------~sitavAV----s~~~ 55 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPK-----------GCTDSVKPTLKPLFAFSAHA------------GSITALAV----SGPY 55 (362)
T ss_pred eEEEeeeeeEEEEEEeccCcc-----------ccccccceeeeccccccccc------------cceeEEEe----ccee
Confidence 467888888777777653321 11112234445556678888 89999998 3569
Q ss_pred EEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEE
Q 010256 129 YLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLR 208 (514)
Q Consensus 129 l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~ 208 (514)
+++|+.|-+|+|||++.......
T Consensus 56 ~aSGssDetI~IYDm~k~~qlg~--------------------------------------------------------- 78 (362)
T KOG0294|consen 56 VASGSSDETIHIYDMRKRKQLGI--------------------------------------------------------- 78 (362)
T ss_pred EeccCCCCcEEEEeccchhhhcc---------------------------------------------------------
Confidence 99999999999999987541110
Q ss_pred eceeeccccccccccccccccccCccCeEEEEECCCCC--EEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCce
Q 010256 209 LPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE--TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVI 285 (514)
Q Consensus 209 i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 285 (514)
+..|.+.|+++.|.+.-. .|++| +||.|.+|+...-... .++.+|.+.|
T Consensus 79 --------------------ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~--------~slK~H~~~V 130 (362)
T KOG0294|consen 79 --------------------LLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELL--------KSLKAHKGQV 130 (362)
T ss_pred --------------------eeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEe--------eeeccccccc
Confidence 246778999999998754 78888 9999999998754322 2678899999
Q ss_pred EEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEE
Q 010256 286 TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLK 365 (514)
Q Consensus 286 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~ 365 (514)
+.++.+|.+ ++-++.+.|+.+++||+-.|+.. ...+.. ..-+.+.|+|.|.+++.+....|-
T Consensus 131 t~lsiHPS~-KLALsVg~D~~lr~WNLV~Gr~a----~v~~L~-------------~~at~v~w~~~Gd~F~v~~~~~i~ 192 (362)
T KOG0294|consen 131 TDLSIHPSG-KLALSVGGDQVLRTWNLVRGRVA----FVLNLK-------------NKATLVSWSPQGDHFVVSGRNKID 192 (362)
T ss_pred ceeEecCCC-ceEEEEcCCceeeeehhhcCccc----eeeccC-------------CcceeeEEcCCCCEEEEEeccEEE
Confidence 999999999 89999999999999999887652 222222 223449999999999888777999
Q ss_pred EEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCccee
Q 010256 366 LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMR 445 (514)
Q Consensus 366 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 445 (514)
||.+.+ ......+..... +.++.|- ++.+|++|.+|+.|.+||..+. .....+.+|..+|.
T Consensus 193 i~q~d~-A~v~~~i~~~~r----------------~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~-~~~~~~~AH~~RVK 253 (362)
T KOG0294|consen 193 IYQLDN-ASVFREIENPKR----------------ILCATFL-DGSELLVGGDNEWISLKDTDSD-TPLTEFLAHENRVK 253 (362)
T ss_pred EEeccc-HhHhhhhhcccc----------------ceeeeec-CCceEEEecCCceEEEeccCCC-ccceeeecchhhee
Confidence 999986 555544433311 1145554 6778999999999999999875 44588999999999
Q ss_pred EEEE--CCCCCceeecCCCCeEEE
Q 010256 446 RQVQ--TPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 446 ~~~~--~~~~~~l~s~s~d~~v~i 467 (514)
.+.+ .|++.+|+++|.||.|++
T Consensus 254 ~i~~~~~~~~~~lvTaSSDG~I~v 277 (362)
T KOG0294|consen 254 DIASYTNPEHEYLVTASSDGFIKV 277 (362)
T ss_pred eeEEEecCCceEEEEeccCceEEE
Confidence 9985 588999999999999999
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-23 Score=171.59 Aligned_cols=267 Identities=15% Similarity=0.211 Sum_probs=194.0
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
+.|.+|.|.| .+..|++++.||++++|++....+..
T Consensus 14 d~IS~v~f~~--~~~~LLvssWDgslrlYdv~~~~l~~------------------------------------------ 49 (323)
T KOG1036|consen 14 DGISSVKFSP--SSSDLLVSSWDGSLRLYDVPANSLKL------------------------------------------ 49 (323)
T ss_pred hceeeEEEcC--cCCcEEEEeccCcEEEEeccchhhhh------------------------------------------
Confidence 7899999964 44588888999999999987653111
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
...|..++.+.+|.++. .+++| -||.|+.+|+.++...
T Consensus 50 ------------------------------------~~~~~~plL~c~F~d~~-~~~~G~~dg~vr~~Dln~~~~~---- 88 (323)
T KOG1036|consen 50 ------------------------------------KFKHGAPLLDCAFADES-TIVTGGLDGQVRRYDLNTGNED---- 88 (323)
T ss_pred ------------------------------------heecCCceeeeeccCCc-eEEEeccCceEEEEEecCCcce----
Confidence 13566889999998855 45555 9999999999977654
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
.+..|..++++|.+++.. ..+++|+.|++|++||.+.... .-.++.. ..|.++..+
T Consensus 89 -----~igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~~----~~~~d~~-------------kkVy~~~v~- 144 (323)
T KOG1036|consen 89 -----QIGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNKVV----VGTFDQG-------------KKVYCMDVS- 144 (323)
T ss_pred -----eeccCCCceEEEEeeccC-CeEEEcccCccEEEEecccccc----ccccccC-------------ceEEEEecc-
Confidence 456799999999999876 7899999999999999997332 2222222 368777766
Q ss_pred CCCEEEE-EeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 352 NGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 352 ~g~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
|..|+. +.+..+.+||+++-..+.+... ...... +-++++-|++.-.+.++-||+|.+=.+...
T Consensus 145 -g~~LvVg~~~r~v~iyDLRn~~~~~q~re--S~lkyq------------tR~v~~~pn~eGy~~sSieGRVavE~~d~s 209 (323)
T KOG1036|consen 145 -GNRLVVGTSDRKVLIYDLRNLDEPFQRRE--SSLKYQ------------TRCVALVPNGEGYVVSSIEGRVAVEYFDDS 209 (323)
T ss_pred -CCEEEEeecCceEEEEEcccccchhhhcc--ccceeE------------EEEEEEecCCCceEEEeecceEEEEccCCc
Confidence 556666 5669999999997333332111 111111 228889998888999999999987555443
Q ss_pred ---ceeeeeecCCC---------cceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCC
Q 010256 431 ---SAESTTLEASK---------NPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSE 498 (514)
Q Consensus 431 ---~~~~~~~~~~~---------~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~ 498 (514)
+...-.++.|. .||++++|+|-.+.+|||+.||.|.+ |++....-......+...|.+++|+.||
T Consensus 210 ~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~---Wd~~~rKrl~q~~~~~~SI~slsfs~dG 286 (323)
T KOG1036|consen 210 EEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNI---WDLFNRKRLKQLAKYETSISSLSFSMDG 286 (323)
T ss_pred hHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEE---ccCcchhhhhhccCCCCceEEEEeccCC
Confidence 11224555554 47999999999999999999999999 3333222222233456789999999999
Q ss_pred CEEEEEec
Q 010256 499 NSIACAAS 506 (514)
Q Consensus 499 ~~l~~~~~ 506 (514)
..||+|++
T Consensus 287 ~~LAia~s 294 (323)
T KOG1036|consen 287 SLLAIASS 294 (323)
T ss_pred CeEEEEec
Confidence 99999873
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.5e-25 Score=200.99 Aligned_cols=291 Identities=16% Similarity=0.209 Sum_probs=214.6
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccc
Q 010256 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (514)
....++|+.+++-..++.++.. .++||.+...... +.... .++... ...-.
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~-----------------~~~~~--~~k~kq---------n~~~S 89 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRS-LLKLYAINPNDFS-----------------EKCNH--RFKTKQ---------NKFYS 89 (839)
T ss_pred ccccceEeecCCcceeEEeccc-ceeeEeeCcccCC-----------------cceee--eccccc---------ceeee
Confidence 4667888888988888887654 6888887644321 11111 111100 00134
Q ss_pred eeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCC
Q 010256 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (514)
Q Consensus 115 v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (514)
+..|.|. +-..++|++++..|.|.+||+...-. .+
T Consensus 90 ~~DVkW~-~~~~NlIAT~s~nG~i~vWdlnk~~r----------------------------------nk---------- 124 (839)
T KOG0269|consen 90 AADVKWG-QLYSNLIATCSTNGVISVWDLNKSIR----------------------------------NK---------- 124 (839)
T ss_pred hhhcccc-cchhhhheeecCCCcEEEEecCcccc----------------------------------ch----------
Confidence 6778887 55667999999999999999864210 00
Q ss_pred CCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC-CCEEEEe-cCCeEEEEeccCCCceeeeec
Q 010256 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVD 272 (514)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~ 272 (514)
.. ..+..|...++++.|++. ..+|++| .||+|++||++..+...
T Consensus 125 -----------------------------~l-~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~---- 170 (839)
T KOG0269|consen 125 -----------------------------LL-TVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS---- 170 (839)
T ss_pred -----------------------------hh-hHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccc----
Confidence 00 013688899999999986 5677888 99999999999665442
Q ss_pred cCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecC
Q 010256 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (514)
Q Consensus 273 ~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 352 (514)
++.+....|+.|+|+|..++.|+++...|.+++||+|....+. ..+.+|.++|.++.|+|+
T Consensus 171 ----t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~---------------~k~~AH~GpV~c~nwhPn 231 (839)
T KOG0269|consen 171 ----TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCE---------------KKLTAHNGPVLCLNWHPN 231 (839)
T ss_pred ----cccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHH---------------HHhhcccCceEEEeecCC
Confidence 4556788899999999877999999999999999999876541 226678899999999999
Q ss_pred CCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCE-EEEEe--CCCcEEEEecC
Q 010256 353 GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR-VATGS--YSNLFRVFGCS 428 (514)
Q Consensus 353 g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~--~dg~i~iwd~~ 428 (514)
+.+||+|+ |++|+|||+.. .+.......+. +..+..+.|-|+..+ ||+++ .|-.|+|||+.
T Consensus 232 r~~lATGGRDK~vkiWd~t~-~~~~~~~tInT--------------iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvr 296 (839)
T KOG0269|consen 232 REWLATGGRDKMVKIWDMTD-SRAKPKHTINT--------------IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVR 296 (839)
T ss_pred CceeeecCCCccEEEEeccC-CCccceeEEee--------------cceeeeeeeccCccchhhhhhccccceEEEEeec
Confidence 99999976 59999999985 33322222222 122448999998765 66665 67899999998
Q ss_pred CCceeeeeecCCCcceeEEEEC-CCCCceeecCCCCeEEE
Q 010256 429 EGSAESTTLEASKNPMRRQVQT-PSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 429 ~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~s~d~~v~i 467 (514)
...-...++..|+..++.++|. .|...+.+++.|++|..
T Consensus 297 RPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 297 RPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred cccccceeeeccCccccceeccCCCceeeEeecCccHHHH
Confidence 7655558999999999999996 46678999999999887
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.4e-24 Score=192.82 Aligned_cols=281 Identities=12% Similarity=0.156 Sum_probs=218.1
Q ss_pred ccceeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcce
Q 010256 88 PEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPI 167 (514)
Q Consensus 88 ~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v 167 (514)
|.|+..+++.+|. ..|..++.. ++..++++++||++++|+-..++......
T Consensus 2 ~~Y~ls~~l~gH~------------~DVr~v~~~---~~~~i~s~sRd~t~~vw~~~~~~~l~~~~-------------- 52 (745)
T KOG0301|consen 2 PQYKLSHELEGHK------------SDVRAVAVT---DGVCIISGSRDGTVKVWAKKGKQYLETHA-------------- 52 (745)
T ss_pred CcceeEEEeccCc------------cchheeEec---CCeEEeecCCCCceeeeeccCccccccee--------------
Confidence 4677888999998 778888873 34579999999999999987665322111
Q ss_pred ecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEE-EEECC-CC
Q 010256 168 FGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINS-ISNNS-DG 245 (514)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~-~~ 245 (514)
..+|.+.|.. +++.+ ++
T Consensus 53 -------------------------------------------------------------~~~~~g~i~~~i~y~e~~~ 71 (745)
T KOG0301|consen 53 -------------------------------------------------------------FEGPKGFIANSICYAESDK 71 (745)
T ss_pred -------------------------------------------------------------cccCcceeeccceeccccC
Confidence 1334444544 66664 44
Q ss_pred CEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccc
Q 010256 246 ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL 324 (514)
Q Consensus 246 ~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 324 (514)
-.+++| .|.+|.+|......+.. .+.+|...|.++....++ . +++||.|.++++|-...-. .
T Consensus 72 ~~l~~g~~D~~i~v~~~~~~~P~~--------~LkgH~snVC~ls~~~~~-~-~iSgSWD~TakvW~~~~l~------~- 134 (745)
T KOG0301|consen 72 GRLVVGGMDTTIIVFKLSQAEPLY--------TLKGHKSNVCSLSIGEDG-T-LISGSWDSTAKVWRIGELV------Y- 134 (745)
T ss_pred cceEeecccceEEEEecCCCCchh--------hhhccccceeeeecCCcC-c-eEecccccceEEecchhhh------c-
Confidence 457777 99999999998665543 688999999999988887 4 9999999999999875422 1
Q ss_pred eeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeE
Q 010256 325 FEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC 404 (514)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 404 (514)
.+.+|...|++++.-|++.++-.+.|.+|++|.- ++.+.++.+|...+. .+
T Consensus 135 -----------~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~---~~~l~tf~gHtD~VR---------------gL 185 (745)
T KOG0301|consen 135 -----------SLQGHTASVWAVASLPENTYVTGSADKTIKLWKG---GTLLKTFSGHTDCVR---------------GL 185 (745)
T ss_pred -----------ccCCcchheeeeeecCCCcEEeccCcceeeeccC---Cchhhhhccchhhee---------------ee
Confidence 1567779999999999984444456799999985 678899999987654 78
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccc
Q 010256 405 CLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFD 484 (514)
Q Consensus 405 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~ 484 (514)
++-+++. +++++.||.|++|++. ++. +..+.+|+.-++++...++...++++++|+++|+.+..... ..+.
T Consensus 186 ~vl~~~~-flScsNDg~Ir~w~~~-ge~-l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~~------q~I~ 256 (745)
T KOG0301|consen 186 AVLDDSH-FLSCSNDGSIRLWDLD-GEV-LLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDECV------QVIT 256 (745)
T ss_pred EEecCCC-eEeecCCceEEEEecc-Cce-eeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCceE------EEEe
Confidence 8877655 6689999999999994 434 47889999999999999999999999999999995444222 2222
Q ss_pred c-ccceEEEEEcCCCCEEEEEecCcEEEEe
Q 010256 485 F-SMKLLHLAWHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 485 ~-~~~v~~~~~spd~~~l~~~~~~~~~i~~ 513 (514)
+ .-.|.++.+-++|..++.++++.++||.
T Consensus 257 lPttsiWsa~~L~NgDIvvg~SDG~VrVfT 286 (745)
T KOG0301|consen 257 LPTTSIWSAKVLLNGDIVVGGSDGRVRVFT 286 (745)
T ss_pred cCccceEEEEEeeCCCEEEeccCceEEEEE
Confidence 3 3488999999999999899999999996
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-24 Score=189.07 Aligned_cols=287 Identities=15% Similarity=0.237 Sum_probs=215.2
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
...|..-|.++.+|...+++.||+. |.|+|||+...... .|.. .+..- .
T Consensus 415 tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k----------------~Pvs----qLdcl----------~ 463 (705)
T KOG0639|consen 415 TLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNK----------------SPVS----QLDCL----------N 463 (705)
T ss_pred hhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCC----------------Cccc----ccccc----------C
Confidence 4579999999999999999999875 56999998654321 1111 11110 0
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
-+.-|.+... .+||+.|++|+.-.++.|||+.........++. +....|..++.+||.+..
T Consensus 464 rdnyiRSckL--~pdgrtLivGGeastlsiWDLAapTprikaelt-------------ssapaCyALa~spDakvc---- 524 (705)
T KOG0639|consen 464 RDNYIRSCKL--LPDGRTLIVGGEASTLSIWDLAAPTPRIKAELT-------------SSAPACYALAISPDAKVC---- 524 (705)
T ss_pred cccceeeeEe--cCCCceEEeccccceeeeeeccCCCcchhhhcC-------------CcchhhhhhhcCCcccee----
Confidence 1144777777 578889999999999999999865433222222 112345588999999988
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
++++.||.|.||| +.+. ...+. +.+|.+.+.||.+++||..|-+| -|.+||.||++++.+..+
T Consensus 525 --------FsccsdGnI~vwD-Lhnq------~~Vrq-fqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqq 588 (705)
T KOG0639|consen 525 --------FSCCSDGNIAVWD-LHNQ------TLVRQ-FQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ 588 (705)
T ss_pred --------eeeccCCcEEEEE-cccc------eeeec-ccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhh
Confidence 9999999999999 4432 23344 38999999999999999999999 899999999997765532
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
......|.++-+.|++ .+++.|-.++.+.+........ +. +.-|.+-|.++.|
T Consensus 589 ---------hdF~SQIfSLg~cP~~-dWlavGMens~vevlh~skp~k-----yq------------lhlheScVLSlKF 641 (705)
T KOG0639|consen 589 ---------HDFSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTSKPEK-----YQ------------LHLHESCVLSLKF 641 (705)
T ss_pred ---------hhhhhhheecccCCCc-cceeeecccCcEEEEecCCccc-----ee------------ecccccEEEEEEe
Confidence 2346789999999999 8999999999988877654332 22 3335588999999
Q ss_pred ecCCCEEEE-EeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEec
Q 010256 350 ARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (514)
Q Consensus 350 s~~g~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 427 (514)
.+.|+++++ |-|.-+..|.... +..+...+.. ..|+++.+|.|.+||+||+.|....||.+
T Consensus 642 a~cGkwfvStGkDnlLnawrtPy-GasiFqskE~----------------SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 642 AYCGKWFVSTGKDNLLNAWRTPY-GASIFQSKES----------------SSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cccCceeeecCchhhhhhccCcc-ccceeecccc----------------CcceeeeeccCceEEEecCCCcceEEEEE
Confidence 999999998 5568999999876 5444333222 22568999999999999999998888865
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-23 Score=170.58 Aligned_cols=278 Identities=14% Similarity=0.206 Sum_probs=194.9
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
+.+|.+-|+|+.|.+.|+++||++.|++|+|||..... ..+......+.|+
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s-------------------~~W~~Ts~Wrah~---------- 59 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDS-------------------GTWSCTSSWRAHD---------- 59 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCC-------------------CceEEeeeEEecC----------
Confidence 56899999999999999999999999999999974433 2445667788898
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCcc-------EEEEEeeccCCCccccCCcceecccccCCceeeccCC
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-------KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 183 (514)
+.|..|.|.+..=|+.+++++.|++++||.-... +......+... .+.|. .+.|.|.-
T Consensus 60 --~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Ds------rssV~-------DV~FaP~h 124 (361)
T KOG2445|consen 60 --GSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDS------RSSVT-------DVKFAPKH 124 (361)
T ss_pred --CcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecC------Cccee-------EEEecchh
Confidence 9999999998788999999999999999976321 12222222211 23333 77888765
Q ss_pred CccccccCCCCCCcccCCCCCCcEEeceeecccccc-----ccccccccccccCccCeEEEEECCC---CCEEEEecC--
Q 010256 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETN-----LVAGCRRIYAHAHDYHINSISNNSD---GETFISADD-- 253 (514)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~-----~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~s~~d-- 253 (514)
.-+. +++++.||.+|||+.+.-.+.. ...+........+..+..|+.|+|. .++|+.|.|
T Consensus 125 lGLk----------lA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~ 194 (361)
T KOG2445|consen 125 LGLK----------LAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDED 194 (361)
T ss_pred cceE----------EEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccC
Confidence 4432 2999999999999832222211 0111111112356678889999985 678888843
Q ss_pred ----CeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCC---cEEEEEecCCeEEEEEcCCCcccc------c
Q 010256 254 ----LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC---NMLAYSSSKGSIRLIDMRQSALCD------T 320 (514)
Q Consensus 254 ----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~---~~l~~~~~dg~i~~wd~~~~~~~~------~ 320 (514)
+.++||........... ..++.+|..+|+.++|.|+-+ .+||+++.|| |+||.++...... .
T Consensus 195 a~~~~~~~Iye~~e~~rKw~k----va~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~ 269 (361)
T KOG2445|consen 195 APHLNKVKIYEYNENGRKWLK----VAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLA 269 (361)
T ss_pred CccccceEEEEecCCcceeee----ehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccC
Confidence 48999987755432221 136778999999999999743 5899999999 9999997532110 0
Q ss_pred --cccceeccCCCCccceeeccccceeEEEEecCCCEEEE-EeCCeEEEEEccC
Q 010256 321 --HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS-RDYMTLKLWDINM 371 (514)
Q Consensus 321 --~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~i~iwd~~~ 371 (514)
....++. .....+.+|.+.|..+.|+-.|..|++ |+||.|++|....
T Consensus 270 ~~~~~~l~v----~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 270 PDLMTDLPV----EKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred CCCccccce----EEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 0000111 112346789999999999999999998 4569999998764
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-23 Score=179.70 Aligned_cols=284 Identities=15% Similarity=0.276 Sum_probs=206.6
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
+.|++|.|+|.. ..+++++.|+.++||.+....-..+...
T Consensus 214 ~~I~sv~FHp~~--plllvaG~d~~lrifqvDGk~N~~lqS~-------------------------------------- 253 (514)
T KOG2055|consen 214 GGITSVQFHPTA--PLLLVAGLDGTLRIFQVDGKVNPKLQSI-------------------------------------- 253 (514)
T ss_pred CCceEEEecCCC--ceEEEecCCCcEEEEEecCccChhheee--------------------------------------
Confidence 789999997654 4899999999999998865431111111
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCC-EEEEe-cCCeEEEEeccCCCceeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~ 270 (514)
.-...+|.+.+|.|+|. .++++ ....++.||+.+.+.. .+
T Consensus 254 -------------------------------------~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~-k~ 295 (514)
T KOG2055|consen 254 -------------------------------------HLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVT-KL 295 (514)
T ss_pred -------------------------------------eeccCccceeeecCCCceEEEecccceEEEEeeccccccc-cc
Confidence 11236788999999998 77777 8899999999866532 11
Q ss_pred eccCCCccccc-CCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 271 VDVKPANMEDL-TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 271 ~~~~~~~~~~~-~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
+ ...++ ...+.....+|++ ++|+..+..|.|.+.-..+++. +.+++.. +.|..++|
T Consensus 296 ---~--~~~g~e~~~~e~FeVShd~-~fia~~G~~G~I~lLhakT~el----i~s~Kie-------------G~v~~~~f 352 (514)
T KOG2055|consen 296 ---K--PPYGVEEKSMERFEVSHDS-NFIAIAGNNGHIHLLHAKTKEL----ITSFKIE-------------GVVSDFTF 352 (514)
T ss_pred ---c--CCCCcccchhheeEecCCC-CeEEEcccCceEEeehhhhhhh----hheeeec-------------cEEeeEEE
Confidence 1 22222 3456788899999 8999999999999999888876 3444433 67999999
Q ss_pred ecCCCEEEE-EeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecC
Q 010256 350 ARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 350 s~~g~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 428 (514)
+.+++.|++ |++|.|.+||++. ..++.++......- -+++|.+++|.|||+|+..|.|.|||.+
T Consensus 353 sSdsk~l~~~~~~GeV~v~nl~~-~~~~~rf~D~G~v~--------------gts~~~S~ng~ylA~GS~~GiVNIYd~~ 417 (514)
T KOG2055|consen 353 SSDSKELLASGGTGEVYVWNLRQ-NSCLHRFVDDGSVH--------------GTSLCISLNGSYLATGSDSGIVNIYDGN 417 (514)
T ss_pred ecCCcEEEEEcCCceEEEEecCC-cceEEEEeecCccc--------------eeeeeecCCCceEEeccCcceEEEeccc
Confidence 999998877 4669999999997 67787776654431 1378999999999999999999999965
Q ss_pred CC-----ceeeeeecCCCcceeEEEECCCCCceeecCC--CCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEE
Q 010256 429 EG-----SAESTTLEASKNPMRRQVQTPSRPSRPLGSL--SGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSI 501 (514)
Q Consensus 429 ~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~--d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l 501 (514)
+. .+....+..-...|+.+.|+|+.++||.+|. +..+|++.-.....+.--+.....-+.|++++|||.+-+|
T Consensus 418 s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~l 497 (514)
T KOG2055|consen 418 SCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYL 497 (514)
T ss_pred hhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceE
Confidence 42 1223556666788999999999999988875 5677871111000000001112346789999999999999
Q ss_pred EEEe-cCcEEEE
Q 010256 502 ACAA-SNSLYMY 512 (514)
Q Consensus 502 ~~~~-~~~~~i~ 512 (514)
|.|. .+.+.+|
T Consensus 498 AvGNe~grv~l~ 509 (514)
T KOG2055|consen 498 AVGNEAGRVHLF 509 (514)
T ss_pred EeecCCCceeeE
Confidence 9998 4556666
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.8e-25 Score=201.52 Aligned_cols=246 Identities=18% Similarity=0.292 Sum_probs=189.3
Q ss_pred ceEEEEEcC-CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccce
Q 010256 37 IISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (514)
Q Consensus 37 ~V~~~~~s~-~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (514)
.+..|+|+. +.++|||++.+|.|.+||+.... ..+.+..|..|+ ..+
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~--------------------rnk~l~~f~EH~------------Rs~ 136 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSI--------------------RNKLLTVFNEHE------------RSA 136 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccc--------------------cchhhhHhhhhc------------cce
Confidence 455677875 56899999999999999987421 111335677887 889
Q ss_pred eEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCC
Q 010256 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (514)
Q Consensus 116 ~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (514)
+++.|++... .+|++|+.||+|++||++..+-...
T Consensus 137 ~~ldfh~tep-~iliSGSQDg~vK~~DlR~~~S~~t-------------------------------------------- 171 (839)
T KOG0269|consen 137 NKLDFHSTEP-NILISGSQDGTVKCWDLRSKKSKST-------------------------------------------- 171 (839)
T ss_pred eeeeeccCCc-cEEEecCCCceEEEEeeeccccccc--------------------------------------------
Confidence 9999987554 5999999999999999987652211
Q ss_pred CcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC-CCEEEEe-cCCeEEEEeccCCCceeeeecc
Q 010256 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVDV 273 (514)
Q Consensus 196 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~ 273 (514)
..+....|+++.|+|. +..|+++ +.|.+.+||++...+...
T Consensus 172 ---------------------------------~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~---- 214 (839)
T KOG0269|consen 172 ---------------------------------FRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEK---- 214 (839)
T ss_pred ---------------------------------ccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHH----
Confidence 1234467889999985 7788888 999999999997766543
Q ss_pred CCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCC
Q 010256 274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (514)
Q Consensus 274 ~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 353 (514)
.+..|.++|.++.|+|++ .+||+|+.|+.|+|||+.+.+... ..+++. ..++..|+|-|..
T Consensus 215 ---k~~AH~GpV~c~nwhPnr-~~lATGGRDK~vkiWd~t~~~~~~--~~tInT-------------iapv~rVkWRP~~ 275 (839)
T KOG0269|consen 215 ---KLTAHNGPVLCLNWHPNR-EWLATGGRDKMVKIWDMTDSRAKP--KHTINT-------------IAPVGRVKWRPAR 275 (839)
T ss_pred ---HhhcccCceEEEeecCCC-ceeeecCCCccEEEEeccCCCccc--eeEEee-------------cceeeeeeeccCc
Confidence 578899999999999987 899999999999999998654311 122221 2589999999987
Q ss_pred CEEE-EE---eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcC-CCCEEEEEeCCCcEEEEecC
Q 010256 354 RHIL-SR---DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 354 ~~l~-~~---~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~ 428 (514)
++.+ ++ .|..|+|||++.+.-|..++..|...+. .++|.. |...|.+++.||.|..-..+
T Consensus 276 ~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt---------------~i~W~~~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 276 SYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVT---------------GIAWDSGDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred cchhhhhhccccceEEEEeeccccccceeeeccCcccc---------------ceeccCCCceeeEeecCccHHHHhhhh
Confidence 6554 43 4589999999988889999999987643 788865 45678899999988665554
Q ss_pred CC
Q 010256 429 EG 430 (514)
Q Consensus 429 ~~ 430 (514)
..
T Consensus 341 na 342 (839)
T KOG0269|consen 341 NA 342 (839)
T ss_pred cc
Confidence 43
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7e-23 Score=192.44 Aligned_cols=277 Identities=16% Similarity=0.209 Sum_probs=205.5
Q ss_pred cccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccc
Q 010256 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (514)
..|...-+.|+|.|+|++|.+++.||.|++|+....... |+. +.-+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~-----------------P~t-----i~~~g----------- 56 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE-----------------PET-----IDISG----------- 56 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC-----------------Cch-----hhccC-----------
Confidence 478899999999999999999999999999997544211 111 01022
Q ss_pred ccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
..|.+++- ++.+|++++.+++|.+|.+.+++...+
T Consensus 57 -~~v~~ia~----~s~~f~~~s~~~tv~~y~fps~~~~~i---------------------------------------- 91 (933)
T KOG1274|consen 57 -ELVSSIAC----YSNHFLTGSEQNTVLRYKFPSGEEDTI---------------------------------------- 91 (933)
T ss_pred -ceeEEEee----cccceEEeeccceEEEeeCCCCCccce----------------------------------------
Confidence 66777776 334899999999999999877642110
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeee
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 270 (514)
+...+-++++++|+.+|++++.| +|-.|++-++.+..+..
T Consensus 92 -------------------------------------L~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~-- 132 (933)
T KOG1274|consen 92 -------------------------------------LARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEK-- 132 (933)
T ss_pred -------------------------------------eeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchhe--
Confidence 12223578999999999999999 99999999998666553
Q ss_pred eccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEe
Q 010256 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (514)
Q Consensus 271 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 350 (514)
.+.+|.++|.++.|+|.+ ++||+.+-||.|++||+.++.+........+..+ ......+..++|+
T Consensus 133 ------~lrgh~apVl~l~~~p~~-~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~--------~~~s~i~~~~aW~ 197 (933)
T KOG1274|consen 133 ------VLRGHDAPVLQLSYDPKG-NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNE--------FILSRICTRLAWH 197 (933)
T ss_pred ------eecccCCceeeeeEcCCC-CEEEEEecCceEEEEEcccchhhhhcccCCcccc--------ccccceeeeeeec
Confidence 578899999999999999 9999999999999999998876322111111111 0013467889999
Q ss_pred cC-CCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCC
Q 010256 351 RN-GRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 351 ~~-g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 429 (514)
|+ |++++.+.++.|++|+... ......+........ +..+.|+|+|+|||+++.||.|.|||.++
T Consensus 198 Pk~g~la~~~~d~~Vkvy~r~~-we~~f~Lr~~~~ss~-------------~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 198 PKGGTLAVPPVDNTVKVYSRKG-WELQFKLRDKLSSSK-------------FSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred CCCCeEEeeccCCeEEEEccCC-ceeheeecccccccc-------------eEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 98 5556667889999999986 665555544332211 23799999999999999999999999986
Q ss_pred CceeeeeecCCCcceeEEEECCCCCceeec
Q 010256 430 GSAESTTLEASKNPMRRQVQTPSRPSRPLG 459 (514)
Q Consensus 430 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 459 (514)
-. .+.....|.+++|.|+..-+-.-
T Consensus 264 ~~-----~~~~~~~Vc~~aw~p~~n~it~~ 288 (933)
T KOG1274|consen 264 HE-----RHEFKRAVCCEAWKPNANAITLI 288 (933)
T ss_pred ch-----hccccceeEEEecCCCCCeeEEE
Confidence 21 13345678899999987755433
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.9e-22 Score=181.82 Aligned_cols=293 Identities=11% Similarity=0.107 Sum_probs=190.6
Q ss_pred CCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEEEeeCCCC
Q 010256 47 GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANS 126 (514)
Q Consensus 47 g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~ 126 (514)
++.+++++.|+.|++||+.+++. ...+..+ ..+..++| ++++
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~-----------------------~~~~~~~-------------~~~~~l~~--~~dg 42 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEV-----------------------TRTFPVG-------------QRPRGITL--SKDG 42 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCce-----------------------EEEEECC-------------CCCCceEE--CCCC
Confidence 45788999999999999876652 2344444 33677899 5666
Q ss_pred cEE-EEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCC
Q 010256 127 ALY-LLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (514)
Q Consensus 127 ~~l-~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 205 (514)
+.+ ++++.++.|++||..+++.......... +..+.++|+++.+ ++++..++
T Consensus 43 ~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~----------------~~~~~~~~~g~~l-----------~~~~~~~~ 95 (300)
T TIGR03866 43 KLLYVCASDSDTIQVIDLATGEVIGTLPSGPD----------------PELFALHPNGKIL-----------YIANEDDN 95 (300)
T ss_pred CEEEEEECCCCeEEEEECCCCcEEEeccCCCC----------------ccEEEECCCCCEE-----------EEEcCCCC
Confidence 666 5667889999999998876543332211 1156889999865 13445688
Q ss_pred cEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cC-CeEEEEeccCCCceeeeeccCCCcccccCC
Q 010256 206 SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD-LRINLWNLEISNQSFNIVDVKPANMEDLTE 283 (514)
Q Consensus 206 ~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 283 (514)
.+++|| +.... ....+ .+...+.+++|+|++++++++ .+ ..+.+||.++....... ....
T Consensus 96 ~l~~~d-~~~~~------~~~~~--~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~---------~~~~ 157 (300)
T TIGR03866 96 LVTVID-IETRK------VLAEI--PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV---------LVDQ 157 (300)
T ss_pred eEEEEE-CCCCe------EEeEe--eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE---------EcCC
Confidence 999999 33211 11111 122346789999999999988 54 45778898754432211 1223
Q ss_pred ceEEEEEecCCCcEE-EEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE--e
Q 010256 284 VITSAEFHPTHCNML-AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR--D 360 (514)
Q Consensus 284 ~i~~v~~~p~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~--~ 360 (514)
.+..++|+|++ ..| +++..++.|++||+++++.. ..+..+... ..........++|+|++++++.+ +
T Consensus 158 ~~~~~~~s~dg-~~l~~~~~~~~~v~i~d~~~~~~~----~~~~~~~~~-----~~~~~~~~~~i~~s~dg~~~~~~~~~ 227 (300)
T TIGR03866 158 RPRFAEFTADG-KELWVSSEIGGTVSVIDVATRKVI----KKITFEIPG-----VHPEAVQPVGIKLTKDGKTAFVALGP 227 (300)
T ss_pred CccEEEECCCC-CEEEEEcCCCCEEEEEEcCcceee----eeeeecccc-----cccccCCccceEECCCCCEEEEEcCC
Confidence 45779999999 555 55556999999999987653 222111000 00000124568899999986553 3
Q ss_pred CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEE-eCCCcEEEEecCCCceeeeeecC
Q 010256 361 YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSAESTTLEA 439 (514)
Q Consensus 361 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~ 439 (514)
++.+.+||+++ ++.+..+.... . +.+++|+|+|++|+++ +.+|.|++||+.+++.. ..++.
T Consensus 228 ~~~i~v~d~~~-~~~~~~~~~~~-~---------------~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~-~~~~~ 289 (300)
T TIGR03866 228 ANRVAVVDAKT-YEVLDYLLVGQ-R---------------VWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVI-KSIKV 289 (300)
T ss_pred CCeEEEEECCC-CcEEEEEEeCC-C---------------cceEEECCCCCEEEEEcCCCCeEEEEECCCCcEE-EEEEc
Confidence 47899999986 66554443221 1 2389999999999876 46899999999987543 45554
Q ss_pred CCcceeEEEECC
Q 010256 440 SKNPMRRQVQTP 451 (514)
Q Consensus 440 ~~~~v~~~~~~~ 451 (514)
. ...+.++++|
T Consensus 290 ~-~~~~~~~~~~ 300 (300)
T TIGR03866 290 G-RLPWGVVVRP 300 (300)
T ss_pred c-cccceeEeCC
Confidence 4 3346777654
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-23 Score=197.49 Aligned_cols=265 Identities=15% Similarity=0.236 Sum_probs=211.4
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEE-eeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKV-FDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
..+.+..|. +.++++++.|++|++|+..++..... +..+ .+.+. .+.+..-+..+
T Consensus 209 ~~~~~~q~~----~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH--------~g~V~-------~l~~~~~~~~l----- 264 (537)
T KOG0274|consen 209 HVVLCLQLH----DGFFKSGSDDSTLHLWDLNNGYLILTRLVGH--------FGGVW-------GLAFPSGGDKL----- 264 (537)
T ss_pred chhhhheee----cCeEEecCCCceeEEeecccceEEEeeccCC--------CCCce-------eEEEecCCCEE-----
Confidence 567788883 34899999999999999999886655 5555 34454 66666656665
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeee
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 270 (514)
++|+.|.++++|| ... +.|...+ .+|...|.++... ...+++| .|.+|++|+++++... .
T Consensus 265 -------vsgS~D~t~rvWd-~~s------g~C~~~l-~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l-~- 325 (537)
T KOG0274|consen 265 -------VSGSTDKTERVWD-CST------GECTHSL-QGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACL-N- 325 (537)
T ss_pred -------EEEecCCcEEeEe-cCC------CcEEEEe-cCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceE-E-
Confidence 9999999999999 333 5566665 7999999888764 4567777 8999999999955443 2
Q ss_pred eccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEe
Q 010256 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (514)
Q Consensus 271 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 350 (514)
.+.+|.++|+++..+ + .++++|+.|+.|++||+.+++.. + .+.+|...|.++.+.
T Consensus 326 ------l~~~h~~~V~~v~~~--~-~~lvsgs~d~~v~VW~~~~~~cl----~------------sl~gH~~~V~sl~~~ 380 (537)
T KOG0274|consen 326 ------LLRGHTGPVNCVQLD--E-PLLVSGSYDGTVKVWDPRTGKCL----K------------SLSGHTGRVYSLIVD 380 (537)
T ss_pred ------EeccccccEEEEEec--C-CEEEEEecCceEEEEEhhhceee----e------------eecCCcceEEEEEec
Confidence 345699999999998 4 69999999999999999988763 2 366778999999887
Q ss_pred cCCCEEEEEe-CCeEEEEEccCCC-CceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecC
Q 010256 351 RNGRHILSRD-YMTLKLWDINMDS-GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 351 ~~g~~l~~~~-~~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 428 (514)
+. ..+++|+ |+.|++||+.+ . +++.++.+|...+. .....+++|++++.|+.|++||..
T Consensus 381 ~~-~~~~Sgs~D~~IkvWdl~~-~~~c~~tl~~h~~~v~-----------------~l~~~~~~Lvs~~aD~~Ik~WD~~ 441 (537)
T KOG0274|consen 381 SE-NRLLSGSLDTTIKVWDLRT-KRKCIHTLQGHTSLVS-----------------SLLLRDNFLVSSSADGTIKLWDAE 441 (537)
T ss_pred Cc-ceEEeeeeccceEeecCCc-hhhhhhhhcCCccccc-----------------ccccccceeEeccccccEEEeecc
Confidence 65 7888876 59999999998 6 89999999987632 233467899999999999999999
Q ss_pred CCceeeeeecC-CCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 429 EGSAESTTLEA-SKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 429 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+++++ .++++ |...+..+.+. ...+++++.|+.+++
T Consensus 442 ~~~~~-~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l 478 (537)
T KOG0274|consen 442 EGECL-RTLEGRHVGGVSALALG--KEEILCSSDDGSVKL 478 (537)
T ss_pred cCcee-eeeccCCcccEEEeecC--cceEEEEecCCeeEE
Confidence 98655 67777 67888887776 678899999999999
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.6e-23 Score=178.26 Aligned_cols=300 Identities=17% Similarity=0.255 Sum_probs=210.4
Q ss_pred ccccccceEEEEEcCCC--CeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccc
Q 010256 31 EVQEVDIISAIEFDKSG--DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g--~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (514)
..-+..+|++++|+|.. +++|+|+..|.|-+||+.+.+ |+..-...+..|.
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~-------------------~d~d~v~~f~~hs-------- 234 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE-------------------KDKDGVYLFTPHS-------- 234 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCC-------------------CccCceEEeccCC--------
Confidence 34678999999999954 589999999999999996443 2333344577787
Q ss_pred cccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccc
Q 010256 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (514)
Q Consensus 109 ~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (514)
.+|.+|.|+|... ..+++++.||+|++-|++++....+....
T Consensus 235 ----~~Vs~l~F~P~n~-s~i~ssSyDGtiR~~D~~~~i~e~v~s~~--------------------------------- 276 (498)
T KOG4328|consen 235 ----GPVSGLKFSPANT-SQIYSSSYDGTIRLQDFEGNISEEVLSLD--------------------------------- 276 (498)
T ss_pred ----ccccceEecCCCh-hheeeeccCceeeeeeecchhhHHHhhcC---------------------------------
Confidence 8899999988544 58899999999999999876422111110
Q ss_pred ccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCce
Q 010256 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (514)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 267 (514)
.....+.++.|+.+...++.+ .=|...+||+++.+..
T Consensus 277 ------------------------------------------~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~ 314 (498)
T KOG4328|consen 277 ------------------------------------------TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE 314 (498)
T ss_pred ------------------------------------------ccceeeeeccccCCCccEEEeecccceEEEEeecCCcc
Confidence 011234567777777677777 6669999999988875
Q ss_pred eeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEE
Q 010256 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 347 (514)
.. .+.-|...|.+++++|..+.+|++++.|++.+|||+|.-..... +......|...|.+.
T Consensus 315 ~~-------~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s------------p~lst~~HrrsV~sA 375 (498)
T KOG4328|consen 315 YE-------NLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS------------PFLSTLPHRRSVNSA 375 (498)
T ss_pred ch-------hhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC------------cceecccccceeeee
Confidence 54 34557789999999999989999999999999999987543211 011234577899999
Q ss_pred EEecCCCEEEE-EeCCeEEEEEcc---CCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEE
Q 010256 348 KFARNGRHILS-RDYMTLKLWDIN---MDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 423 (514)
Q Consensus 348 ~~s~~g~~l~~-~~~~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 423 (514)
.|||.+-.|++ +.|..|+|||.. ....++.++. |.... +.....+...|.|+..++++|..-..|-
T Consensus 376 yFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t---------~RwlT~fKA~W~P~~~li~vg~~~r~ID 445 (498)
T KOG4328|consen 376 YFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRT---------GRWLTPFKAAWDPDYNLIVVGRYPRPID 445 (498)
T ss_pred EEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCcc---------cccccchhheeCCCccEEEEeccCccee
Confidence 99997766776 567999999984 2133344333 22211 1111234689999999999999999999
Q ss_pred EEecCCCceeeeeecCC-CcceeE-EEECCCCCceeecC-CCCeEEE
Q 010256 424 VFGCSEGSAESTTLEAS-KNPMRR-QVQTPSRPSRPLGS-LSGVVRR 467 (514)
Q Consensus 424 iwd~~~~~~~~~~~~~~-~~~v~~-~~~~~~~~~l~s~s-~d~~v~i 467 (514)
|+|-+.+ +....+... ...|.+ ..|+|-+..+++|+ ..|.|.+
T Consensus 446 v~~~~~~-q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~v 491 (498)
T KOG4328|consen 446 VFDGNGG-QMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYV 491 (498)
T ss_pred EEcCCCC-EEeeeccCccccccccceeecccccceeccCCccceEEE
Confidence 9998765 333333322 223443 47788888566665 4455555
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.2e-23 Score=173.25 Aligned_cols=218 Identities=17% Similarity=0.218 Sum_probs=161.8
Q ss_pred ccCccCeEEEEECCC-CCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010256 230 HAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 307 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i 307 (514)
.+|...=++++|||- .-.|++| --+.|++|...++.-.. .+..+.+|...|-.++|+|....+|++|+-||+|
T Consensus 208 ~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~v-----d~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsI 282 (440)
T KOG0302|consen 208 NGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKV-----DQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSI 282 (440)
T ss_pred cccCccceeeecccccccccccCccccceEeeeeccCceee-----cCccccccccchhhhccCCccCceEEeeecCceE
Confidence 788888899999994 3347788 68899999998754332 3346778999999999999988899999999999
Q ss_pred EEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccC--CCCceeeeeeccc
Q 010256 308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM--DSGPVATFQVHEH 384 (514)
Q Consensus 308 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~--~~~~~~~~~~~~~ 384 (514)
+|||+|.+.... ..+.+.|.+.|+-+.|+.+-.+|++|+| |+++|||++. .++++..++.|..
T Consensus 283 rIWDiRs~~~~~--------------~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~ 348 (440)
T KOG0302|consen 283 RIWDIRSGPKKA--------------AVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKA 348 (440)
T ss_pred EEEEecCCCccc--------------eeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccC
Confidence 999999974321 1123567789999999998889999877 9999999985 3678899999987
Q ss_pred cccccccccccCCccceeeEEEcCC-CCEEEEEeCCCcEEEEecCCCceee----eeecCCCcceeEEEECCCCCceeec
Q 010256 385 LRPKLCDLYENDSIFDKFECCLSGD-GGRVATGSYSNLFRVFGCSEGSAES----TTLEASKNPMRRQVQTPSRPSRPLG 459 (514)
Q Consensus 385 ~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~s~ 459 (514)
. |+++.|+|. ...|++++.|..|.|||+....... ...++-..-..++.|-+.
T Consensus 349 p---------------ItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHq------- 406 (440)
T KOG0302|consen 349 P---------------ITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQ------- 406 (440)
T ss_pred C---------------eeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEec-------
Confidence 6 449999985 4568888999999999997542211 001110011112222111
Q ss_pred CCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCC-EEEEEecCcEEEEe
Q 010256 460 SLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN-SIACAASNSLYMYY 513 (514)
Q Consensus 460 s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~-~l~~~~~~~~~i~~ 513 (514)
-+..|..+.|+++-+ +|++.+.+++.||.
T Consensus 407 -------------------------GQke~KevhWH~QiPG~lvsTa~dGfnVfk 436 (440)
T KOG0302|consen 407 -------------------------GQKEVKEVHWHRQIPGLLVSTAIDGFNVFK 436 (440)
T ss_pred -------------------------chhHhhhheeccCCCCeEEEecccceeEEE
Confidence 156778999999854 56677788898885
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.3e-23 Score=178.92 Aligned_cols=237 Identities=16% Similarity=0.254 Sum_probs=179.4
Q ss_pred cccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccc
Q 010256 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (514)
.--+++|+|++-+|+|.+|+.|+..|.|++|.+.+|.. +..+.+|=
T Consensus 78 ~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L-----------------------L~v~~aHY----------- 123 (476)
T KOG0646|consen 78 IVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGIL-----------------------LNVLSAHY----------- 123 (476)
T ss_pred cccccceeeeecCCCceEEEeecccCcEEEEEeccccH-----------------------HHHHHhhc-----------
Confidence 33468899999999999999999999999999999884 35567776
Q ss_pred ccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
..|+++.| +.||.+|++|+.||.|.+|.+..-
T Consensus 124 -Q~ITcL~f--s~dgs~iiTgskDg~V~vW~l~~l--------------------------------------------- 155 (476)
T KOG0646|consen 124 -QSITCLKF--SDDGSHIITGSKDGAVLVWLLTDL--------------------------------------------- 155 (476)
T ss_pred -cceeEEEE--eCCCcEEEecCCCccEEEEEEEee---------------------------------------------
Confidence 78999999 789999999999999999987532
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC--CCEEEEe-cCCeEEEEeccCCCcee
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQSF 268 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~~~ 268 (514)
+....+.. ..+...+ ..|+-+|+++...+. ..+++++ .|.++++||+..+....
T Consensus 156 -------v~a~~~~~---------------~~p~~~f-~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLl 212 (476)
T KOG0646|consen 156 -------VSADNDHS---------------VKPLHIF-SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLL 212 (476)
T ss_pred -------cccccCCC---------------ccceeee-ccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeE
Confidence 11111111 1122232 689999999987664 4577787 99999999999776554
Q ss_pred eeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecccc--ceeE
Q 010256 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA--SISD 346 (514)
Q Consensus 269 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~ 346 (514)
.+. ....+.+++.+|.+ ..++.|+.+|.|.+.++.+.......+..-..+........+.+|.+ .|++
T Consensus 213 ti~---------fp~si~av~lDpae-~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITc 282 (476)
T KOG0646|consen 213 TIT---------FPSSIKAVALDPAE-RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITC 282 (476)
T ss_pred EEe---------cCCcceeEEEcccc-cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeE
Confidence 431 46779999999998 89999999999999988664321111111111222233556788888 9999
Q ss_pred EEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccc
Q 010256 347 IKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEH 384 (514)
Q Consensus 347 ~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~ 384 (514)
++++-||.+|++|+. |.|+|||+.+ .++++++....+
T Consensus 283 Lais~DgtlLlSGd~dg~VcvWdi~S-~Q~iRtl~~~kg 320 (476)
T KOG0646|consen 283 LAISTDGTLLLSGDEDGKVCVWDIYS-KQCIRTLQTSKG 320 (476)
T ss_pred EEEecCccEEEeeCCCCCEEEEecch-HHHHHHHhhhcc
Confidence 999999999999975 9999999997 788877764333
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-24 Score=198.92 Aligned_cols=235 Identities=21% Similarity=0.337 Sum_probs=197.0
Q ss_pred ccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEE
Q 010256 230 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 308 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~ 308 (514)
..|...+.++..-..++.+++| .|..+.+|.+....... .+.+|..+|.++.|++.. .+|+.|+.+|+|+
T Consensus 25 ~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~--------S~~~hespIeSl~f~~~E-~LlaagsasgtiK 95 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT--------SLTGHESPIESLTFDTSE-RLLAAGSASGTIK 95 (825)
T ss_pred hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh--------eeeccCCcceeeecCcch-hhhcccccCCcee
Confidence 5788888888886678889998 89999999987544332 578899999999999998 8999999999999
Q ss_pred EEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeecccccc
Q 010256 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRP 387 (514)
Q Consensus 309 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~ 387 (514)
+||+...+.. + .+.+|...+.+++|+|-+.|.++|+ |+.+++||.+. ..+...+.+|...+.
T Consensus 96 ~wDleeAk~v----r------------tLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk-~Gc~~~~~s~~~vv~ 158 (825)
T KOG0267|consen 96 VWDLEEAKIV----R------------TLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK-KGCSHTYKSHTRVVD 158 (825)
T ss_pred eeehhhhhhh----h------------hhhccccCcceeeeccceEEeccccccccceehhhhc-cCceeeecCCcceeE
Confidence 9999987652 2 3677778999999999999998875 59999999997 788889888776543
Q ss_pred ccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 388 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 388 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.+.|+|+|++++.|++|..++|||+..| .....++.|...+..+.|+|..-++++||.|+++++
T Consensus 159 ---------------~l~lsP~Gr~v~~g~ed~tvki~d~~ag-k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f 222 (825)
T KOG0267|consen 159 ---------------VLRLSPDGRWVASGGEDNTVKIWDLTAG-KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRF 222 (825)
T ss_pred ---------------EEeecCCCceeeccCCcceeeeeccccc-ccccccccccccccccccCchhhhhccCCCCceeee
Confidence 7899999999999999999999999877 555889999999999999999999999999999999
Q ss_pred eeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecCcE
Q 010256 468 VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSL 509 (514)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~ 509 (514)
|.+..+++....-.....|.+.+|+|+++.+++|....+
T Consensus 223 ---~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl 261 (825)
T KOG0267|consen 223 ---WDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQISL 261 (825)
T ss_pred ---eccceeEEeeccCCccCCceeeeecCCceeeecCchhhh
Confidence 333323333333334788999999999999998865443
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-22 Score=163.41 Aligned_cols=305 Identities=14% Similarity=0.198 Sum_probs=197.5
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
+.|+++..-+ ..|+++++|+.||.|.+||+++-.......+ +
T Consensus 44 GsvNsL~id~-tegrymlSGgadgsi~v~Dl~n~t~~e~s~l------------i------------------------- 85 (397)
T KOG4283|consen 44 GSVNSLQIDL-TEGRYMLSGGADGSIAVFDLQNATDYEASGL------------I------------------------- 85 (397)
T ss_pred Cccceeeecc-ccceEEeecCCCccEEEEEeccccchhhccc------------e-------------------------
Confidence 8899999975 4578999999999999999986431110000 0
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC-CCEEEEe-cCCeEEEEeccCCCceeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~ 270 (514)
+ ..+.+ ..+....+|+..|.++.|-|- .-.+.++ -|.++++||.++.+....+
T Consensus 86 --------~---k~~c~--------------v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F 140 (397)
T KOG4283|consen 86 --------A---KHKCI--------------VAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDF 140 (397)
T ss_pred --------e---heeee--------------ccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEe
Confidence 0 00000 011113689999999999985 4456666 7999999999977665432
Q ss_pred eccCCCcccccCCceEEEEEecCC--CcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEE
Q 010256 271 VDVKPANMEDLTEVITSAEFHPTH--CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (514)
Q Consensus 271 ~~~~~~~~~~~~~~i~~v~~~p~~--~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (514)
...+.|++-+++|-. ..++|+|..+-.|++.|+.+|... ..+.+|...|.++.
T Consensus 141 ---------~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s----------------H~LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 141 ---------KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS----------------HTLSGHRDGVLAVE 195 (397)
T ss_pred ---------ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce----------------eeeccccCceEEEE
Confidence 145667877887743 158899999999999999998762 34778889999999
Q ss_pred EecCCCEEEE-Ee-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEe
Q 010256 349 FARNGRHILS-RD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (514)
Q Consensus 349 ~s~~g~~l~~-~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 426 (514)
|+|...++++ |+ ||.|++||++....++..+..|....+.+.. ........++.++|+.|+.++++.+.|.++++|+
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~-~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn 274 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILK-TNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWN 274 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccc-ccccccceeeeeeecccchhhhhccCccceEEee
Confidence 9999887765 54 5999999999866788888888754433332 1111122456999999999999999999999999
Q ss_pred cCCCceeeeeec--CCCcce-eEEEE-CCCCCceeecCCCCeEEE---eeCCCCCccccCCcccccccceEEEEEcCCCC
Q 010256 427 CSEGSAESTTLE--ASKNPM-RRQVQ-TPSRPSRPLGSLSGVVRR---VKGADNSALDANGNAFDFSMKLLHLAWHPSEN 499 (514)
Q Consensus 427 ~~~~~~~~~~~~--~~~~~v-~~~~~-~~~~~~l~s~s~d~~v~i---~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~ 499 (514)
..+|......+- .|.... ..+.. +-+...++.--.++.+.+ ..|..+. ..-.|...|.+.++-|+-.
T Consensus 275 ~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir------~l~~h~k~i~c~~~~~~fq 348 (397)
T KOG4283|consen 275 MESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVR------RLSTHLKRINCAAYRPDFE 348 (397)
T ss_pred cccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEE------eeecccceeeEEeecCchh
Confidence 988754321111 111110 00000 111111111112233333 1111111 1112577888888888877
Q ss_pred EEEEEe-cCcEEEE
Q 010256 500 SIACAA-SNSLYMY 512 (514)
Q Consensus 500 ~l~~~~-~~~~~i~ 512 (514)
.+.++. +.+++.|
T Consensus 349 ~~~tg~~d~ni~~w 362 (397)
T KOG4283|consen 349 QCFTGDMNGNIYMW 362 (397)
T ss_pred hhhccccCCccccc
Confidence 777776 5556655
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-22 Score=170.55 Aligned_cols=268 Identities=18% Similarity=0.286 Sum_probs=186.7
Q ss_pred ccccccceEEEEEcCCCC--eEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccc
Q 010256 31 EVQEVDIISAIEFDKSGD--HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~--~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (514)
.++|.+.|+.+..++-|+ +.|+=+..|.|.||++...- +.+.......+. ...+.+.++.+|.
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l------~~l~~~~~~~~~-s~~~Pl~t~~ghk-------- 211 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHL------NALSEPGLEVKD-SEFRPLFTFNGHK-------- 211 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhh------hhhcCccccccc-cccCceEEecccC--------
Confidence 568899999999888654 55555688999999975321 222222221222 3445566788887
Q ss_pred cccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccc
Q 010256 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (514)
Q Consensus 109 ~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (514)
..=+.++|+|...| .|++|..-+.|++|...++....
T Consensus 212 ----~EGy~LdWSp~~~g-~LlsGDc~~~I~lw~~~~g~W~v-------------------------------------- 248 (440)
T KOG0302|consen 212 ----GEGYGLDWSPIKTG-RLLSGDCVKGIHLWEPSTGSWKV-------------------------------------- 248 (440)
T ss_pred ----ccceeeeccccccc-ccccCccccceEeeeeccCceee--------------------------------------
Confidence 66899999986665 68899888999999988764211
Q ss_pred ccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC-CCEEEEe-cCCeEEEEeccCCCc
Q 010256 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQ 266 (514)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~ 266 (514)
+. +. +.+|+..|-.++|+|. ...|++| .||+|+|||++.+.+
T Consensus 249 ----------------------------d~-------~P-f~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~ 292 (440)
T KOG0302|consen 249 ----------------------------DQ-------RP-FTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK 292 (440)
T ss_pred ----------------------------cC-------cc-ccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc
Confidence 00 01 2569999999999997 5577788 899999999997644
Q ss_pred eeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeE
Q 010256 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (514)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 346 (514)
...+ ....|.+-|+.|.|+... .+||+|+.||+++|||+|+-+.- + +...|+-|+.+|++
T Consensus 293 ~~~~------~~kAh~sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~~-~------------pVA~fk~Hk~pIts 352 (440)
T KOG0302|consen 293 KAAV------STKAHNSDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKSG-Q------------PVATFKYHKAPITS 352 (440)
T ss_pred ccee------EeeccCCceeeEEccCCc-ceeeecCCCceEEEEEhhhccCC-C------------cceeEEeccCCeeE
Confidence 3332 346789999999999998 59999999999999999985532 1 23346677899999
Q ss_pred EEEecCC--CEEEEEeCCeEEEEEccCCCC---------------ceeeeeeccccccccccccccCCccceeeEEEcCC
Q 010256 347 IKFARNG--RHILSRDYMTLKLWDINMDSG---------------PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (514)
Q Consensus 347 ~~~s~~g--~~l~~~~~~~i~iwd~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 409 (514)
+.|+|.. -+.++|.|.+|.|||+..+.. +.+.+..|.+.. .+-.+.|++.
T Consensus 353 ieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQk-------------e~KevhWH~Q 419 (440)
T KOG0302|consen 353 IEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQK-------------EVKEVHWHRQ 419 (440)
T ss_pred EEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchh-------------HhhhheeccC
Confidence 9999943 344446779999999975211 112233333211 1236888875
Q ss_pred C-CEEEEEeCCCcEEEEe
Q 010256 410 G-GRVATGSYSNLFRVFG 426 (514)
Q Consensus 410 ~-~~l~s~~~dg~i~iwd 426 (514)
- .+|++.+.|| +.||.
T Consensus 420 iPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 420 IPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred CCCeEEEecccc-eeEEE
Confidence 3 4777777877 44443
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.7e-22 Score=177.62 Aligned_cols=320 Identities=13% Similarity=0.184 Sum_probs=224.3
Q ss_pred eeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceeccccc
Q 010256 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS 173 (514)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 173 (514)
..+.||. +.|.+|.. .+.|.+|++|+.||+|+||.+.++.+.....+. +.|.
T Consensus 394 lvyrGHt------------g~Vr~iSv--dp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d---------~~I~----- 445 (733)
T KOG0650|consen 394 LVYRGHT------------GLVRSISV--DPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD---------SEIR----- 445 (733)
T ss_pred eeEeccC------------CeEEEEEe--cCCcceeeecCCCCcEEEEEeecceEEEEEeec---------ceeE-----
Confidence 3477888 89999999 557789999999999999999999988887776 3344
Q ss_pred CCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--
Q 010256 174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-- 251 (514)
Q Consensus 174 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-- 251 (514)
+++|+|.+..-. ++++.... +.|-+ .. .+ ..+..-+....|+++
T Consensus 446 --~vaw~P~~~~~v----------LAvA~~~~-~~ivn----p~------------~G-----~~~e~~~t~ell~~~~~ 491 (733)
T KOG0650|consen 446 --SVAWNPLSDLCV----------LAVAVGEC-VLIVN----PI------------FG-----DRLEVGPTKELLASAPN 491 (733)
T ss_pred --EEEecCCCCcee----------EEEEecCc-eEEeC----cc------------cc-----chhhhcchhhhhhcCCC
Confidence 889999886531 12222222 32222 00 00 001111122333333
Q ss_pred ---cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC---CeEEEEEcCCCccccccccce
Q 010256 252 ---DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQSALCDTHSKLF 325 (514)
Q Consensus 252 ---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~ 325 (514)
.++.+..|.-...++...-+ ...-.|...|..+.|+..| .+|++...+ ..|.|+++...... ..
T Consensus 492 ~~~p~~~~~~W~~~~~~e~~~~v----~~~I~~~k~i~~vtWHrkG-DYlatV~~~~~~~~VliHQLSK~~sQ----~P- 561 (733)
T KOG0650|consen 492 ESEPDAAVVTWSRASLDELEKGV----CIVIKHPKSIRQVTWHRKG-DYLATVMPDSGNKSVLIHQLSKRKSQ----SP- 561 (733)
T ss_pred ccCCcccceeechhhhhhhccce----EEEEecCCccceeeeecCC-ceEEEeccCCCcceEEEEeccccccc----Cc-
Confidence 36678888755322211000 0122378889999999999 899887764 46888888765431 11
Q ss_pred eccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEE
Q 010256 326 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC 405 (514)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 405 (514)
|....+.|.++.|+|...+|+.++...|+|||+.. ...++.+...... |.+++
T Consensus 562 -----------F~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~k-qelvKkL~tg~kw---------------iS~ms 614 (733)
T KOG0650|consen 562 -----------FRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSK-QELVKKLLTGSKW---------------ISSMS 614 (733)
T ss_pred -----------hhhcCCceeEEEecCCCceEEEEeccceEEEehhH-HHHHHHHhcCCee---------------eeeee
Confidence 22233679999999999999999999999999986 6666555444333 23899
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCC---ccccC--C
Q 010256 406 LSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNS---ALDAN--G 480 (514)
Q Consensus 406 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~---~~~~~--~ 480 (514)
.+|.|.-|+.|+.|+++..||+.-..+..+++..|...+++++|++.-+++++|+.||++.+..|.-.. +..+. .
T Consensus 615 ihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPl 694 (733)
T KOG0650|consen 615 IHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPL 694 (733)
T ss_pred ecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEee
Confidence 999999999999999999999998777779999999999999999999999999999999993222111 11111 1
Q ss_pred -cccccccc----eEEEEEcCCCCEEEEEe-cCcEEEE
Q 010256 481 -NAFDFSMK----LLHLAWHPSENSIACAA-SNSLYMY 512 (514)
Q Consensus 481 -~~~~~~~~----v~~~~~spd~~~l~~~~-~~~~~i~ 512 (514)
.+.+|... |++..|||...+|.+++ ++.+.+|
T Consensus 695 K~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 695 KRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 12245554 99999999999999776 5577777
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.7e-22 Score=173.28 Aligned_cols=263 Identities=14% Similarity=0.164 Sum_probs=191.9
Q ss_pred cceeEEEEeeCCCCcEEEE--eeCCCeEEEEEcCcc--EEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccc
Q 010256 113 EKINKIRWCQSANSALYLL--STNDKTIKLWKVQEK--KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s--~~~d~~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (514)
..+.++.|. ... .|++ .+.|+.+++|.-... ++..+....... - .+++......+
T Consensus 35 pg~~s~~w~--~~n-~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~--------~-------~Cv~~~s~S~y--- 93 (673)
T KOG4378|consen 35 PGDFSFNWQ--RRN-FLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDN--------A-------FCVACASQSLY--- 93 (673)
T ss_pred Ccceeeecc--ccc-eEEEeecCCceeEEEecccCCCCccceeeccccch--------H-------HHHhhhhccee---
Confidence 459999994 332 3444 478899999975433 211111111100 0 02222222333
Q ss_pred ccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCce
Q 010256 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (514)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 267 (514)
.++|+..+.++||| +.. +....++.+|...|+++.++....+||++ ..|.|.+..+.++...
T Consensus 94 ---------~~sgG~~~~Vkiwd-l~~-------kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~t 156 (673)
T KOG4378|consen 94 ---------EISGGQSGCVKIWD-LRA-------KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKT 156 (673)
T ss_pred ---------eeccCcCceeeehh-hHH-------HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccc
Confidence 38999999999999 331 22234468999999999999999999999 8999999999876544
Q ss_pred eeeeccCCCccccc-CCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeE
Q 010256 268 FNIVDVKPANMEDL-TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (514)
Q Consensus 268 ~~~~~~~~~~~~~~-~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 346 (514)
. .+... ...|+-+.|+|....+|.+++.+|.|.+||+...... . .....|..+...
T Consensus 157 t--------~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~----~-----------~~~~~HsAP~~g 213 (673)
T KOG4378|consen 157 T--------TFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI----F-----------HASEAHSAPCRG 213 (673)
T ss_pred c--------ceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcc----c-----------chhhhccCCcCc
Confidence 2 22222 4556789999988678889999999999999765542 1 123557789999
Q ss_pred EEEecCCCEEE-E-EeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEE
Q 010256 347 IKFARNGRHIL-S-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 424 (514)
Q Consensus 347 ~~~s~~g~~l~-~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 424 (514)
++|+|....|+ + |-|..|.+||... .+...++...... ..++|+++|.+|+.|+..|.|..
T Consensus 214 icfspsne~l~vsVG~Dkki~~yD~~s-~~s~~~l~y~~Pl----------------stvaf~~~G~~L~aG~s~G~~i~ 276 (673)
T KOG4378|consen 214 ICFSPSNEALLVSVGYDKKINIYDIRS-QASTDRLTYSHPL----------------STVAFSECGTYLCAGNSKGELIA 276 (673)
T ss_pred ceecCCccceEEEecccceEEEeeccc-ccccceeeecCCc----------------ceeeecCCceEEEeecCCceEEE
Confidence 99999766554 4 5579999999996 6666666554433 28999999999999999999999
Q ss_pred EecCCCceeeeeecCCCcceeEEEECCCC
Q 010256 425 FGCSEGSAESTTLEASKNPMRRQVQTPSR 453 (514)
Q Consensus 425 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 453 (514)
||++..+....++..|...|++++|-|..
T Consensus 277 YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 277 YDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred EecccCCCCceEeeecccceeEEEeeecc
Confidence 99998877779999999999999997764
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-24 Score=195.26 Aligned_cols=193 Identities=18% Similarity=0.266 Sum_probs=165.2
Q ss_pred ccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEE
Q 010256 230 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 308 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~ 308 (514)
.+|..+|.++.|+++..+|++| .+|+|++||++..+... ++.+|...+.++.|+|.+ .+++.|+.|..++
T Consensus 67 ~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vr--------tLtgh~~~~~sv~f~P~~-~~~a~gStdtd~~ 137 (825)
T KOG0267|consen 67 TGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVR--------TLTGHLLNITSVDFHPYG-EFFASGSTDTDLK 137 (825)
T ss_pred eccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhh--------hhhccccCcceeeeccce-EEeccccccccce
Confidence 7899999999999999999999 99999999999665442 788999999999999999 8999999999999
Q ss_pred EEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeecccccc
Q 010256 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRP 387 (514)
Q Consensus 309 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~ 387 (514)
+||++...+ .+. +.+|...+..+.|+|+|++++.|++ ..++|||+.. ++.+..+..|++.+.
T Consensus 138 iwD~Rk~Gc----~~~------------~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~a-gk~~~ef~~~e~~v~ 200 (825)
T KOG0267|consen 138 IWDIRKKGC----SHT------------YKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTA-GKLSKEFKSHEGKVQ 200 (825)
T ss_pred ehhhhccCc----eee------------ecCCcceeEEEeecCCCceeeccCCcceeeeecccc-ccccccccccccccc
Confidence 999986544 233 4446678999999999999999865 9999999997 999999998887533
Q ss_pred ccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCe
Q 010256 388 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV 464 (514)
Q Consensus 388 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~ 464 (514)
++.|+|..-++++|+.|+.+++||+++- ..+.........|.+..|+|+++.+++|.....
T Consensus 201 ---------------sle~hp~e~Lla~Gs~d~tv~f~dletf-e~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl 261 (825)
T KOG0267|consen 201 ---------------SLEFHPLEVLLAPGSSDRTVRFWDLETF-EVISSGKPETDGVRSLAFNPDGKIVLSGEQISL 261 (825)
T ss_pred ---------------ccccCchhhhhccCCCCceeeeecccee-EEeeccCCccCCceeeeecCCceeeecCchhhh
Confidence 7889999999999999999999999975 233445555788999999999999988866543
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-21 Score=176.49 Aligned_cols=314 Identities=18% Similarity=0.176 Sum_probs=207.1
Q ss_pred ccccceEE--EEEcC---CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccc
Q 010256 33 QEVDIISA--IEFDK---SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (514)
Q Consensus 33 ~h~~~V~~--~~~s~---~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (514)
.|.-++.- ..|++ ....||.+..||.|.++|..... |.++.+-+..+..|.
T Consensus 45 ~~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~-----------------fr~ee~~lk~~~aH~------- 100 (720)
T KOG0321|consen 45 NDGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIV-----------------FRLEERQLKKPLAHK------- 100 (720)
T ss_pred cCCCCCCCccccccCCCCccceEEEecCCCceeeecchhhh-----------------cchhhhhhccccccc-------
Confidence 34444444 66766 34689999999999999976443 122333345567777
Q ss_pred ccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccc
Q 010256 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (514)
Q Consensus 108 ~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 187 (514)
..|..+.|.| ....|++++.|.++++||+.+.++......-.+ .+.+. +++|.|+...+
T Consensus 101 -----nAifDl~wap--ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH------~~Svk-------S~cf~~~n~~v- 159 (720)
T KOG0321|consen 101 -----NAIFDLKWAP--GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGH------TGSVK-------SECFMPTNPAV- 159 (720)
T ss_pred -----ceeEeeccCC--CceeEEEccCCceeeeeeeccceeecceeeccc------ccccc-------hhhhccCCCcc-
Confidence 8899999976 345888999999999999999887655322211 23343 77888877754
Q ss_pred cccCCCCCCcccCCCCCCcEEeceeeccccccccc----------------cc----cccccccCccCeEE---EEECCC
Q 010256 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVA----------------GC----RRIYAHAHDYHINS---ISNNSD 244 (514)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~----------------~~----~~~~~~~h~~~v~~---~~~~~~ 244 (514)
+++|+.||.|.|||+--+....... ++ .+. ...+...|.+ +.+..|
T Consensus 160 ----------F~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k-~kA~s~ti~ssvTvv~fkD 228 (720)
T KOG0321|consen 160 ----------FCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRK-WKAASNTIFSSVTVVLFKD 228 (720)
T ss_pred ----------eeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccc-cccccCceeeeeEEEEEec
Confidence 5899999999999942222000000 00 011 1344455555 556678
Q ss_pred CCEEEEe--cCCeEEEEeccCCCceeeeeccCCCccccc---CCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccc
Q 010256 245 GETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDL---TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD 319 (514)
Q Consensus 245 ~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~ 319 (514)
...||++ .|+.|++||+++.....+.-......+..| ...+.++.....| .+|.+.+.|+.|.+|++.+...-
T Consensus 229 e~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG-t~L~AsCtD~sIy~ynm~s~s~s- 306 (720)
T KOG0321|consen 229 ESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG-TYLFASCTDNSIYFYNMRSLSIS- 306 (720)
T ss_pred cceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCC-CeEEEEecCCcEEEEeccccCcC-
Confidence 8888887 599999999997654433211111122223 4457788888888 55555666999999999875431
Q ss_pred ccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCc
Q 010256 320 THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSI 398 (514)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (514)
+...+.++.. ...-..-..+|++.++++|+ +...++|.+.....+...+.+|...
T Consensus 307 -P~~~~sg~~~----------~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~e------------- 362 (720)
T KOG0321|consen 307 -PVAEFSGKLN----------SSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTRE------------- 362 (720)
T ss_pred -chhhccCccc----------ceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceE-------------
Confidence 1222222110 01112234689999999986 5999999999877778888888765
Q ss_pred cceeeEEEcCCC-CEEEEEeCCCcEEEEecCCC
Q 010256 399 FDKFECCLSGDG-GRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 399 ~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~ 430 (514)
|++++|.|.. .-++++++|.+++||++..+
T Consensus 363 --Vt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 363 --VTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred --EEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 5589997743 23677799999999999765
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.3e-21 Score=172.68 Aligned_cols=197 Identities=15% Similarity=0.146 Sum_probs=138.4
Q ss_pred ceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecC-CCEEEEEe-C
Q 010256 284 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN-GRHILSRD-Y 361 (514)
Q Consensus 284 ~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~~~~-~ 361 (514)
.|+.+.|.|.....|++++.||.|++|.+..+..... ...+...++.|...|+++.|+|- ...|++++ |
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~---------~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd 699 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN---------EMTPEKILTIHGEKITSLRFHPLAADVLAVASYD 699 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcc---------cCCcceeeecccceEEEEEecchhhhHhhhhhcc
Confidence 3567777776667899999999999999988664211 11224568889999999999993 44666665 4
Q ss_pred CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCC
Q 010256 362 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASK 441 (514)
Q Consensus 362 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 441 (514)
.+|++||+.+ .+....+.+|... |+.++|||||+.+|+.+.||+|++|+..++......-.+..
T Consensus 700 ~Ti~lWDl~~-~~~~~~l~gHtdq---------------If~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpv 763 (1012)
T KOG1445|consen 700 STIELWDLAN-AKLYSRLVGHTDQ---------------IFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPV 763 (1012)
T ss_pred ceeeeeehhh-hhhhheeccCcCc---------------eeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCc
Confidence 9999999998 8888899999865 45999999999999999999999999987755433322221
Q ss_pred -cceeEEEECCCCCceeecCCCCeEEE----eeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEe
Q 010256 442 -NPMRRQVQTPSRPSRPLGSLSGVVRR----VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 505 (514)
Q Consensus 442 -~~v~~~~~~~~~~~l~s~s~d~~v~i----~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~ 505 (514)
..-..+.|.-+|+++++.+.|..-.. ++...+....+....++-.-.++--.+.+|.+.|...+
T Consensus 764 gtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltG 832 (1012)
T KOG1445|consen 764 GTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTG 832 (1012)
T ss_pred cCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEec
Confidence 23346788889999998888865443 33333221122222223334444455677877776554
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-21 Score=162.06 Aligned_cols=288 Identities=15% Similarity=0.152 Sum_probs=204.9
Q ss_pred ceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeecccccc-----ccccccccccccCccCeEEEEEC-------C
Q 010256 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETN-----LVAGCRRIYAHAHDYHINSISNN-------S 243 (514)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~-----~~~~~~~~~~~~h~~~v~~~~~~-------~ 243 (514)
...|+|||.++ ++.+.|..+++|++....-.. ........+.......|..-+|- |
T Consensus 54 gckWSPDGSci------------L~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP 121 (406)
T KOG2919|consen 54 GCKWSPDGSCI------------LSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQP 121 (406)
T ss_pred cceeCCCCceE------------EeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCC
Confidence 67899999999 999999999999942221111 01111111111223456666663 5
Q ss_pred CCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccC---CceEEEEEecCCCcEEEEEecCCeEEEEEc-CCCccc
Q 010256 244 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLT---EVITSAEFHPTHCNMLAYSSSKGSIRLIDM-RQSALC 318 (514)
Q Consensus 244 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~-~~~~~~ 318 (514)
+..++++. .+.-|++||.-+++..... ....|. ....+++|+||| ..|+ ++..+.|++||+ |.|..+
T Consensus 122 ~t~l~a~ssr~~PIh~wdaftG~lraSy------~~ydh~de~taAhsL~Fs~DG-eqlf-aGykrcirvFdt~RpGr~c 193 (406)
T KOG2919|consen 122 STNLFAVSSRDQPIHLWDAFTGKLRASY------RAYDHQDEYTAAHSLQFSPDG-EQLF-AGYKRCIRVFDTSRPGRDC 193 (406)
T ss_pred ccceeeeccccCceeeeeccccccccch------hhhhhHHhhhhheeEEecCCC-CeEe-ecccceEEEeeccCCCCCC
Confidence 67788887 8999999999877644321 112233 234689999999 5665 456789999999 777655
Q ss_pred cccccceeccCCCCccceeeccccceeEEEEecCC-CEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccC
Q 010256 319 DTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYEND 396 (514)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (514)
.......+++ .+..+-|.+++|+|.. +.++.|+. ..+-||.-.. +.++..+-+|.+.
T Consensus 194 ~vy~t~~~~k---------~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~-~~pl~llggh~gG----------- 252 (406)
T KOG2919|consen 194 PVYTTVTKGK---------FGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG-RRPLQLLGGHGGG----------- 252 (406)
T ss_pred cchhhhhccc---------ccccceeeeeeccCCCCcceeeecccceeeeEecCC-CCceeeecccCCC-----------
Confidence 4322222221 2345789999999954 58888887 7888888876 8899999888876
Q ss_pred CccceeeEEEcCCCCEEEEEe-CCCcEEEEecCCCceeeeeecCCCc-ceeEEEE--CCCCCceeecCCCCeEEEeeCCC
Q 010256 397 SIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAESTTLEASKN-PMRRQVQ--TPSRPSRPLGSLSGVVRRVKGAD 472 (514)
Q Consensus 397 ~~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~--~~~~~~l~s~s~d~~v~i~~~~~ 472 (514)
|+.++|.++|+.|++|+ .|-.|..||++.....+..|..|.. ....+.| .|.+++|++|+.||.|++.+...
T Consensus 253 ----vThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 253 ----VTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred ----eeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 45899999999999987 5778999999987676678888877 5556666 58999999999999999954444
Q ss_pred CCccccCCcccccccceEEEEEcCCCCEEEEEecCcEE
Q 010256 473 NSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLY 510 (514)
Q Consensus 473 ~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~ 510 (514)
+-. .......++..++.++++|--.++|+++...++
T Consensus 329 ~gn--~~sv~~~~sd~vNgvslnP~mpilatssGqr~f 364 (406)
T KOG2919|consen 329 LGN--EVSVTGNYSDTVNGVSLNPIMPILATSSGQRIF 364 (406)
T ss_pred CCC--cccccccccccccceecCcccceeeeccCceee
Confidence 331 111122468899999999998888888877554
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-21 Score=168.80 Aligned_cols=233 Identities=14% Similarity=0.121 Sum_probs=179.7
Q ss_pred ccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEE
Q 010256 233 DYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (514)
Q Consensus 233 ~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd 311 (514)
.++|.+++-+|.|.+|+.| ..|.|++|.+.++.... .+..|-..|+++.|+.|+ .+|++|+.||.|.+|+
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~--------v~~aHYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~ 151 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN--------VLSAHYQSITCLKFSDDG-SHIITGSKDGAVLVWL 151 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHH--------HHHhhccceeEEEEeCCC-cEEEecCCCccEEEEE
Confidence 4789999999999999999 89999999999876553 457799999999999999 8999999999999999
Q ss_pred cCCCccccccccceeccCCCCccceeeccccceeEEEEecC--CCEEEEE-eCCeEEEEEccCCCCceeeeeeccccccc
Q 010256 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN--GRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPK 388 (514)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--g~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~ 388 (514)
+..--.. ... ..+.+...+..|.-+|+++...+. ...|++. .|.++++||+.. +..+.++.....
T Consensus 152 l~~lv~a------~~~-~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~-g~LLlti~fp~s---- 219 (476)
T KOG0646|consen 152 LTDLVSA------DND-HSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL-GVLLLTITFPSS---- 219 (476)
T ss_pred EEeeccc------ccC-CCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc-ceeeEEEecCCc----
Confidence 8652211 111 144556678889999999998864 3466665 569999999998 888877765543
Q ss_pred cccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCc---------------eeeeeecCCCc--ceeEEEECC
Q 010256 389 LCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS---------------AESTTLEASKN--PMRRQVQTP 451 (514)
Q Consensus 389 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~---------------~~~~~~~~~~~--~v~~~~~~~ 451 (514)
+.+++.+|-++.++.|+.+|.|.+.++.... .....+.+|.+ +|++++++-
T Consensus 220 ------------i~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~ 287 (476)
T KOG0646|consen 220 ------------IKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST 287 (476)
T ss_pred ------------ceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec
Confidence 2389999999999999999999988875432 12255678988 999999999
Q ss_pred CCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEE
Q 010256 452 SRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSI 501 (514)
Q Consensus 452 ~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l 501 (514)
||.+|++|+.||.|++ |.+.............+.|+.+.+.|-.+-+
T Consensus 288 DgtlLlSGd~dg~Vcv---Wdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~ 334 (476)
T KOG0646|consen 288 DGTLLLSGDEDGKVCV---WDIYSKQCIRTLQTSKGPVTNLQINPLERGI 334 (476)
T ss_pred CccEEEeeCCCCCEEE---EecchHHHHHHHhhhccccceeEeeccccce
Confidence 9999999999999999 3222211111222246788888886654433
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-21 Score=176.09 Aligned_cols=300 Identities=15% Similarity=0.139 Sum_probs=196.8
Q ss_pred ccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCC
Q 010256 198 SFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA 276 (514)
Q Consensus 198 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~ 276 (514)
++.+.++|.|.++| ......... ++.......|...|.++.|-|-...|+++ .|.++++||+++.+..-. .
T Consensus 67 LavadE~G~i~l~d-t~~~~fr~e-e~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~------~ 138 (720)
T KOG0321|consen 67 LAVADEDGGIILFD-TKSIVFRLE-ERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGG------R 138 (720)
T ss_pred EEEecCCCceeeec-chhhhcchh-hhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecc------e
Confidence 48899999999998 333222211 22222337899999999999966677888 899999999996654321 1
Q ss_pred cccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccc--ccc-ccceeccCC------CCc--cceeecccccee
Q 010256 277 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC--DTH-SKLFEEQEA------PGT--RSFFTEIIASIS 345 (514)
Q Consensus 277 ~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~--~~~-~~~~~~~~~------~~~--~~~~~~~~~~i~ 345 (514)
.+.+|...+.+++|.|+++..|++|+.||.|.|||++-...- ... ...+..+.. +.. ......+...|.
T Consensus 139 ~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ 218 (720)
T KOG0321|consen 139 LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIF 218 (720)
T ss_pred eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCcee
Confidence 367899999999999999899999999999999999865411 000 001111111 100 111233445555
Q ss_pred E---EEEecCCCEEEEEe--CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCC
Q 010256 346 D---IKFARNGRHILSRD--YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 420 (514)
Q Consensus 346 ~---~~~s~~g~~l~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 420 (514)
+ +.+..|...||+++ |+.|+|||++.. ....... ......-.+++..-.++.++.....|.+|++.+.|+
T Consensus 219 ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~-~~~~r~e----p~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~ 293 (720)
T KOG0321|consen 219 SSVTVVLFKDESTLASAGAADSTIKVWDLRKN-YTAYRQE----PRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN 293 (720)
T ss_pred eeeEEEEEeccceeeeccCCCcceEEEeeccc-ccccccC----CCcccCccCcccceeeeEEEEecCCCCeEEEEecCC
Confidence 5 55667888888853 699999999862 2111110 000001112223334566788888889988888899
Q ss_pred cEEEEecCCCceee-eeecCCCcc-e-eEEEECCCCCceeecCCCCeEEEeeCCCCCccccC-CcccccccceEEEEEcC
Q 010256 421 LFRVFGCSEGSAES-TTLEASKNP-M-RRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDAN-GNAFDFSMKLLHLAWHP 496 (514)
Q Consensus 421 ~i~iwd~~~~~~~~-~~~~~~~~~-v-~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp 496 (514)
.|+.|++.+..... ..+.++... . ..-..+|++.+|++|+.|....+..-..+ +.. ....+|.-.|+.++|.|
T Consensus 294 sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~---e~~~~~l~Ght~eVt~V~w~p 370 (720)
T KOG0321|consen 294 SIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSP---EAPPALLLGHTREVTTVRWLP 370 (720)
T ss_pred cEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCc---cCChhhhhCcceEEEEEeecc
Confidence 99999998653322 344444322 1 23356899999999999999999322222 222 23447999999999987
Q ss_pred C--CCEEEEEecCcEEEEe
Q 010256 497 S--ENSIACAASNSLYMYY 513 (514)
Q Consensus 497 d--~~~l~~~~~~~~~i~~ 513 (514)
. .+.+.+..|.++.+|.
T Consensus 371 S~~t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 371 SATTPVATCSDDFRVKIWR 389 (720)
T ss_pred ccCCCceeeccCcceEEEe
Confidence 5 5656665578899985
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-21 Score=161.77 Aligned_cols=318 Identities=17% Similarity=0.213 Sum_probs=207.5
Q ss_pred ccccceEEEEEcC-----CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccc
Q 010256 33 QEVDIISAIEFDK-----SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (514)
Q Consensus 33 ~h~~~V~~~~~s~-----~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (514)
.|..+|..++|++ +.+.+||.+.+ ++.||+......+ +.+......
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~i--------------------r~lq~y~D~-------- 86 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGI--------------------RLLQSYADE-------- 86 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccce--------------------eeeeeccCC--------
Confidence 5778999999996 33567776544 7999997644321 111111111
Q ss_pred ccccccceeEEEEeeCCC--CcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCc
Q 010256 108 SLEIEEKINKIRWCQSAN--SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (514)
Q Consensus 108 ~~~~~~~v~~i~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 185 (514)
++++...-++|+-..+ ..++++++.-|.|+|.|+.++++..
T Consensus 87 --d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~----------------------------------- 129 (385)
T KOG1034|consen 87 --DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK----------------------------------- 129 (385)
T ss_pred --CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcc-----------------------------------
Confidence 1126677777865333 3477788888999999887765311
Q ss_pred cccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCC-CEEEEe-cCCeEEEEeccC
Q 010256 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEI 263 (514)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~ 263 (514)
.+.+|...|+.+.+.|+. ++++++ .|.+|++|++++
T Consensus 130 ------------------------------------------~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 130 ------------------------------------------NYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred ------------------------------------------ceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 136788999999999985 677778 899999999996
Q ss_pred CCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccccc--cee---------ccCCCC
Q 010256 264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK--LFE---------EQEAPG 332 (514)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~--~~~---------~~~~~~ 332 (514)
.. ++.++ ...++|.+.|.++.|+++| .+|++++.|..+++|++...+....... .+. ....+.
T Consensus 168 ~~-Cv~Vf----GG~egHrdeVLSvD~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~f 241 (385)
T KOG1034|consen 168 DV-CVAVF----GGVEGHRDEVLSVDFSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHF 241 (385)
T ss_pred Ce-EEEEe----cccccccCcEEEEEEcCCC-CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccc
Confidence 54 44433 2578999999999999999 8999999999999999985432211111 111 110000
Q ss_pred cc-ceeeccccceeEEEEecCCCEEEEE-eCCeEEEEEccCCCCceeeeeeccccccccccc-cccCCccceeeEEEcCC
Q 010256 333 TR-SFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDL-YENDSIFDKFECCLSGD 409 (514)
Q Consensus 333 ~~-~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~ 409 (514)
+. ..-.-|...|.|+.|- |.++++- .++.|..|....-++.+......+.....+..+ +.+..++ ....+|.|-
T Consensus 242 p~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iW-firf~~d~~ 318 (385)
T KOG1034|consen 242 PDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIW-FIRFAFDPW 318 (385)
T ss_pred ccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceE-EEEEeecHH
Confidence 00 1223477788888887 6788884 458999998721122222221111111111111 1111111 124566777
Q ss_pred CCEEEEEeCCCcEEEEecCCCceee-eeec--CCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 410 GGRVATGSYSNLFRVFGCSEGSAES-TTLE--ASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 410 ~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~--~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+++||.|...|.|++||++...... .++. .....|++.+|+.|+.+|+....|++|-.
T Consensus 319 ~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwr 379 (385)
T KOG1034|consen 319 QKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWR 379 (385)
T ss_pred HHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEE
Confidence 8999999999999999998765432 3333 23467999999999999999999998765
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.9e-20 Score=169.25 Aligned_cols=269 Identities=12% Similarity=0.094 Sum_probs=180.0
Q ss_pred cEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCc
Q 010256 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS 206 (514)
Q Consensus 127 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 206 (514)
..+++++.|+.|++||+.+++.......... +..+.|+|+++.+ ++++..++.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~----------------~~~l~~~~dg~~l-----------~~~~~~~~~ 54 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR----------------PRGITLSKDGKLL-----------YVCASDSDT 54 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC----------------CCceEECCCCCEE-----------EEEECCCCe
Confidence 4788899999999999998876665543311 1268899999865 145667899
Q ss_pred EEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCc
Q 010256 207 LRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEV 284 (514)
Q Consensus 207 i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 284 (514)
+++|| ....+ ....+ ..+ ..+..++|+|+++.++++ .++.|++||+++.+.... +. +...
T Consensus 55 v~~~d-~~~~~------~~~~~-~~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~--------~~-~~~~ 116 (300)
T TIGR03866 55 IQVID-LATGE------VIGTL-PSG-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAE--------IP-VGVE 116 (300)
T ss_pred EEEEE-CCCCc------EEEec-cCC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeE--------ee-CCCC
Confidence 99999 33221 11111 222 235678999999977654 689999999986543321 11 2234
Q ss_pred eEEEEEecCCCcEEEEEecCC-eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE-e-C
Q 010256 285 ITSAEFHPTHCNMLAYSSSKG-SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-D-Y 361 (514)
Q Consensus 285 i~~v~~~p~~~~~l~~~~~dg-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~-~ 361 (514)
+.+++|+|++ .++++++.++ .+.+||.++++... .... ...+..++|+|+|++|+.+ . +
T Consensus 117 ~~~~~~~~dg-~~l~~~~~~~~~~~~~d~~~~~~~~----~~~~-------------~~~~~~~~~s~dg~~l~~~~~~~ 178 (300)
T TIGR03866 117 PEGMAVSPDG-KIVVNTSETTNMAHFIDTKTYEIVD----NVLV-------------DQRPRFAEFTADGKELWVSSEIG 178 (300)
T ss_pred cceEEECCCC-CEEEEEecCCCeEEEEeCCCCeEEE----EEEc-------------CCCccEEEECCCCCEEEEEcCCC
Confidence 6789999999 7888887765 56778987765421 1111 1235678999999988654 3 5
Q ss_pred CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEE-EeCCCcEEEEecCCCceeeeeecCC
Q 010256 362 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT-GSYSNLFRVFGCSEGSAESTTLEAS 440 (514)
Q Consensus 362 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~ 440 (514)
+.|++||+.+ ++.+..+..+...... ... ....++|+|++++++. .+.++.+.+||+.+++.. ..+ .+
T Consensus 179 ~~v~i~d~~~-~~~~~~~~~~~~~~~~-------~~~-~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~-~~~-~~ 247 (300)
T TIGR03866 179 GTVSVIDVAT-RKVIKKITFEIPGVHP-------EAV-QPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL-DYL-LV 247 (300)
T ss_pred CEEEEEEcCc-ceeeeeeeeccccccc-------ccC-CccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE-EEE-Ee
Confidence 9999999997 6666655433211000 000 0126889999998654 455678999999876443 232 23
Q ss_pred CcceeEEEECCCCCceeec-CCCCeEEEee
Q 010256 441 KNPMRRQVQTPSRPSRPLG-SLSGVVRRVK 469 (514)
Q Consensus 441 ~~~v~~~~~~~~~~~l~s~-s~d~~v~i~~ 469 (514)
...+..+.|+|++++|+++ +.++.|++++
T Consensus 248 ~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 248 GQRVWQLAFTPDEKYLLTTNGVSNDVSVID 277 (300)
T ss_pred CCCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence 3468899999999999876 5689999933
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.4e-21 Score=173.20 Aligned_cols=144 Identities=10% Similarity=0.191 Sum_probs=108.0
Q ss_pred cceeEEEEec-CCCEEEEEe-CCeEEEEEccCCC------CceeeeeeccccccccccccccCCccceeeEEEcCC-CCE
Q 010256 342 ASISDIKFAR-NGRHILSRD-YMTLKLWDINMDS------GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD-GGR 412 (514)
Q Consensus 342 ~~i~~~~~s~-~g~~l~~~~-~~~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~ 412 (514)
..|+.+.|.| |.+.|+.+. ||.|++|.+...+ .+...+..|... |+++.|+|- ...
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eK---------------I~slRfHPLAadv 692 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEK---------------ITSLRFHPLAADV 692 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccce---------------EEEEEecchhhhH
Confidence 4689999999 666777754 5999999997633 234455555443 448999994 568
Q ss_pred EEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEee---CCCCCccccCCcccccccce
Q 010256 413 VATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVK---GADNSALDANGNAFDFSMKL 489 (514)
Q Consensus 413 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~---~~~~~~~~~~~~~~~~~~~v 489 (514)
|++++.|-+|++||+.+. .....+.+|++.|..++|+|+|+.+|+.+.||+++++. +..+.. +-.+ . -...-
T Consensus 693 La~asyd~Ti~lWDl~~~-~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~-Eg~g-p--vgtRg 767 (1012)
T KOG1445|consen 693 LAVASYDSTIELWDLANA-KLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVY-EGKG-P--VGTRG 767 (1012)
T ss_pred hhhhhccceeeeeehhhh-hhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccc-cCCC-C--ccCcc
Confidence 899999999999999987 45589999999999999999999999999999999922 222110 1111 0 12344
Q ss_pred EEEEEcCCCCEEEEEe
Q 010256 490 LHLAWHPSENSIACAA 505 (514)
Q Consensus 490 ~~~~~spd~~~l~~~~ 505 (514)
..+-|.-||++|++.+
T Consensus 768 ARi~wacdgr~viv~G 783 (1012)
T KOG1445|consen 768 ARILWACDGRIVIVVG 783 (1012)
T ss_pred eeEEEEecCcEEEEec
Confidence 6788999999988765
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-22 Score=194.77 Aligned_cols=202 Identities=16% Similarity=0.205 Sum_probs=160.7
Q ss_pred ccCccCeEEEEECCCC-CEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010256 230 HAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 307 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i 307 (514)
..|++.|..+.|++.. ++||+| +||.|.|||+...+..... .-....+.|.+++|+..-.+.|++++.+|++
T Consensus 113 ~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~------~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~ 186 (1049)
T KOG0307|consen 113 SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTP------GSQAPPSEIKCLSWNRKVSHILASGSPSGRA 186 (1049)
T ss_pred cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCC------CCCCCcccceEeccchhhhHHhhccCCCCCc
Confidence 6799999999999975 499999 9999999999865544321 1122467899999998776899999999999
Q ss_pred EEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCC--EEEE-EeC--CeEEEEEccCCCCceeeeeec
Q 010256 308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR--HILS-RDY--MTLKLWDINMDSGPVATFQVH 382 (514)
Q Consensus 308 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~--~l~~-~~~--~~i~iwd~~~~~~~~~~~~~~ 382 (514)
.|||+|..+.+. .+..+. ....+..++|+|+.. ++++ .+| -.|.+||++....+++++++|
T Consensus 187 ~iWDlr~~~pii----~ls~~~----------~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H 252 (1049)
T KOG0307|consen 187 VIWDLRKKKPII----KLSDTP----------GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGH 252 (1049)
T ss_pred eeccccCCCccc----ccccCC----------CccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccc
Confidence 999999876531 111111 113478899999764 3333 344 789999999888899999888
Q ss_pred cccccccccccccCCccceeeEEEcCCC-CEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCC-ceeecC
Q 010256 383 EHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP-SRPLGS 460 (514)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~s 460 (514)
+.. |.++.|++.+ .+|++++.|++|.+|+.++++ .+..+....+++..+.|.|... .++.++
T Consensus 253 ~~G---------------ilslsWc~~D~~lllSsgkD~~ii~wN~~tgE-vl~~~p~~~nW~fdv~w~pr~P~~~A~as 316 (1049)
T KOG0307|consen 253 QRG---------------ILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE-VLGELPAQGNWCFDVQWCPRNPSVMAAAS 316 (1049)
T ss_pred ccc---------------eeeeccCCCCchhhhcccCCCCeeEecCCCce-EeeecCCCCcceeeeeecCCCcchhhhhe
Confidence 864 4589999866 889999999999999999984 4467777888999999999888 888999
Q ss_pred CCCeEEE
Q 010256 461 LSGVVRR 467 (514)
Q Consensus 461 ~d~~v~i 467 (514)
.||.|.|
T Consensus 317 fdgkI~I 323 (1049)
T KOG0307|consen 317 FDGKISI 323 (1049)
T ss_pred eccceee
Confidence 9999999
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-21 Score=162.03 Aligned_cols=286 Identities=17% Similarity=0.250 Sum_probs=192.7
Q ss_pred CeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEEEeeCCCCc
Q 010256 48 DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSA 127 (514)
Q Consensus 48 ~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 127 (514)
..+|++..+|.|+|||..+++ ++..++++. ..++.++|.......
T Consensus 41 ~~vav~lSngsv~lyd~~tg~-----------------------~l~~fk~~~------------~~~N~vrf~~~ds~h 85 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ-----------------------LLEEFKGPP------------ATTNGVRFISCDSPH 85 (376)
T ss_pred eeEEEEecCCeEEEEeccchh-----------------------hhheecCCC------------CcccceEEecCCCCC
Confidence 579999999999999998866 456788887 779999997633445
Q ss_pred EEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcE
Q 010256 128 LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSL 207 (514)
Q Consensus 128 ~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 207 (514)
.+.+++.||+|++||++.......+...
T Consensus 86 ~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~---------------------------------------------------- 113 (376)
T KOG1188|consen 86 GVISCSSDGTVRLWDIRSQAESARISWT---------------------------------------------------- 113 (376)
T ss_pred eeEEeccCCeEEEEEeecchhhhheecc----------------------------------------------------
Confidence 7889999999999999876533222211
Q ss_pred EeceeeccccccccccccccccccCc-cCeEEEEECCCCCEEEEe-----cCCeEEEEeccCCCceeeeeccCCCccccc
Q 010256 208 RLPVVVTSQETNLVAGCRRIYAHAHD-YHINSISNNSDGETFISA-----DDLRINLWNLEISNQSFNIVDVKPANMEDL 281 (514)
Q Consensus 208 ~i~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 281 (514)
.+. .+..+++.+..++.+++| .+-.|.+||++..++.+.. -.+.|
T Consensus 114 -----------------------~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~------~~eSH 164 (376)
T KOG1188|consen 114 -----------------------QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQ------LNESH 164 (376)
T ss_pred -----------------------CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhh------hhhhc
Confidence 111 344566666667777776 3788999999977764332 34679
Q ss_pred CCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCC--CEEEEE
Q 010256 282 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG--RHILSR 359 (514)
Q Consensus 282 ~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g--~~l~~~ 359 (514)
.+.|+++.|+|..+++|++|+.||.|.+||+.....-+....++ .|...|..+.|..++ +.....
T Consensus 165 ~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-------------N~~sSI~~igw~~~~ykrI~clT 231 (376)
T KOG1188|consen 165 NDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI-------------NHGSSIHLIGWLSKKYKRIMCLT 231 (376)
T ss_pred cCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhh-------------cccceeeeeeeecCCcceEEEEE
Confidence 99999999999999999999999999999997654322222222 234679999999887 533334
Q ss_pred eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcC-CCCEEEEEeC-CCcEEEEecC---CC--ce
Q 010256 360 DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSY-SNLFRVFGCS---EG--SA 432 (514)
Q Consensus 360 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~-dg~i~iwd~~---~~--~~ 432 (514)
...+..+|+++. +.+...+................+ + +.. +.+| ++...+.++. -|...++-+. ++ ..
T Consensus 232 H~Etf~~~ele~-~~~~~~~~~~~~~~~d~r~~~~~d--Y-~I~-~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~ 306 (376)
T KOG1188|consen 232 HMETFAIYELED-GSEETWLENPDVSADDLRKEDNCD--Y-VIN-EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLT 306 (376)
T ss_pred ccCceeEEEccC-CChhhcccCccchhhhHHhhhhhh--h-eee-cccCCCcceEEEeccccCceeEEEeeecccccccC
Confidence 558999999986 554444432211110000000000 0 001 1223 4445554444 5666666544 22 12
Q ss_pred eeeeecC-CCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 433 ESTTLEA-SKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 433 ~~~~~~~-~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
....+.+ |..-|+++.|...+.++.+|++||.+.+
T Consensus 307 ~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~ 342 (376)
T KOG1188|consen 307 EPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQA 342 (376)
T ss_pred ccccccCCcHHHHHHHhhhcccceeeccCCCceEEE
Confidence 2356666 7778899999988999999999999999
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.8e-21 Score=164.59 Aligned_cols=334 Identities=13% Similarity=0.187 Sum_probs=215.2
Q ss_pred ccceEEEEEcCCCC-eEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccc
Q 010256 35 VDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (514)
Q Consensus 35 ~~~V~~~~~s~~g~-~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (514)
..+|.++.|.++.. .||||+.|..|+||.+......+. .+...+...+..|. .
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~--------------~~~V~y~s~Ls~H~------------~ 66 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG--------------DMKVEYLSSLSRHT------------R 66 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCC--------------ceeEEEeecccCCc------------c
Confidence 35799999999776 999999999999999876553210 13445777888888 8
Q ss_pred ceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCC
Q 010256 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (514)
Q Consensus 114 ~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (514)
.|++++| +++|.+|++|+.+|.|.+|....-... .. +. .
T Consensus 67 aVN~vRf--~p~gelLASg~D~g~v~lWk~~~~~~~---~~---------------------------d~-e-------- 105 (434)
T KOG1009|consen 67 AVNVVRF--SPDGELLASGGDGGEVFLWKQGDVRIF---DA---------------------------DT-E-------- 105 (434)
T ss_pred eeEEEEE--cCCcCeeeecCCCceEEEEEecCcCCc---cc---------------------------cc-h--------
Confidence 8999999 667789999999999999987641100 00 00 0
Q ss_pred CCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeec
Q 010256 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (514)
Q Consensus 194 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~ 272 (514)
.+.....-..+..+.+|...|..++|+|++.+++++ -|.++++||+..+....
T Consensus 106 ----------------------~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~---- 159 (434)
T KOG1009|consen 106 ----------------------ADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLA---- 159 (434)
T ss_pred ----------------------hhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEe----
Confidence 000000001112246799999999999999999999 89999999999665442
Q ss_pred cCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccccc-cee---ccCCCCcc-cee--ecccccee
Q 010256 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK-LFE---EQEAPGTR-SFF--TEIIASIS 345 (514)
Q Consensus 273 ~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~---~~~~~~~~-~~~--~~~~~~i~ 345 (514)
.+.+|...+..++|.|-+ +++++-+.|...+.+.+...+....... ... ..+..+.. +.+ ........
T Consensus 160 ----~~~dh~~yvqgvawDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFr 234 (434)
T KOG1009|consen 160 ----ILDDHEHYVQGVAWDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFR 234 (434)
T ss_pred ----eccccccccceeecchhh-hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhh
Confidence 467899999999999998 8999999998777777765443221110 000 00111000 000 01123466
Q ss_pred EEEEecCCCEEEEEe-----CC-----eEEEEEccCCCCceeeeeecccccc--ccccccccCCccceeeEEE-cCCCCE
Q 010256 346 DIKFARNGRHILSRD-----YM-----TLKLWDINMDSGPVATFQVHEHLRP--KLCDLYENDSIFDKFECCL-SGDGGR 412 (514)
Q Consensus 346 ~~~~s~~g~~l~~~~-----~~-----~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~-s~~~~~ 412 (514)
.++|+|+|.++++.+ .+ ..++|+-..-.++...+.......- ..+.+|-.-+.......-| -|-+-.
T Consensus 235 RlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlv 314 (434)
T KOG1009|consen 235 RLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLV 314 (434)
T ss_pred hcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceE
Confidence 789999999999732 12 3355554433444444443332110 0111110000000000011 122333
Q ss_pred EEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 413 VATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 413 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+|.++. +.|+|||.++.......-.-|..+++.++|+++|.+|+..|.||...+
T Consensus 315 faiAt~-~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 315 FAIATK-NSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred EEEeec-ceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 445544 689999999876666677789999999999999999999999998877
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.9e-21 Score=162.32 Aligned_cols=307 Identities=15% Similarity=0.183 Sum_probs=199.2
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
++|..+.|.+... ..+++|+.|..|++|.+..++.
T Consensus 14 ~pv~s~dfq~n~~-~~laT~G~D~~iriW~v~r~~~-------------------------------------------- 48 (434)
T KOG1009|consen 14 EPVYSVDFQKNSL-NKLATAGGDKDIRIWKVNRSEP-------------------------------------------- 48 (434)
T ss_pred CceEEEEeccCcc-cceecccCccceeeeeeeecCC--------------------------------------------
Confidence 6799999954322 2899999999999998875431
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCc-----
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ----- 266 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~----- 266 (514)
+..+..|.. ...+..|...|+++.|+|+|+.|++| ++|.|.+|-......
T Consensus 49 --------~~~~~~V~y----------------~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~ 104 (434)
T KOG1009|consen 49 --------GGGDMKVEY----------------LSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADT 104 (434)
T ss_pred --------CCCceeEEE----------------eecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccc
Confidence 111111211 11147899999999999999999999 999999998761100
Q ss_pred ---e-eeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecccc
Q 010256 267 ---S-FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (514)
Q Consensus 267 ---~-~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (514)
. .+.+.. ...+.+|...|..++|+|++ +++++++.|..+++||+..|... . .+.+|..
T Consensus 105 e~~~~ke~w~v-~k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l~----~------------~~~dh~~ 166 (434)
T KOG1009|consen 105 EADLNKEKWVV-KKVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQLL----A------------ILDDHEH 166 (434)
T ss_pred hhhhCccceEE-EEEecccccchhhhhccCCC-ceeeeeeccceEEEEEeccceeE----e------------ecccccc
Confidence 0 000000 02466799999999999999 99999999999999999999863 2 2455678
Q ss_pred ceeEEEEecCCCEEEE-EeCCeEEEEEccCCCCceeeee-----e--ccccccccccccccCCccce-eeEEEcCCCCEE
Q 010256 343 SISDIKFARNGRHILS-RDYMTLKLWDINMDSGPVATFQ-----V--HEHLRPKLCDLYENDSIFDK-FECCLSGDGGRV 413 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~-~~~~~i~iwd~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l 413 (514)
.+..++|.|-++++++ +.|...+.+.+.. .+.+.... . ..+.......+|+++..... ..++|+|||.+|
T Consensus 167 yvqgvawDpl~qyv~s~s~dr~~~~~~~~~-~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~ll 245 (434)
T KOG1009|consen 167 YVQGVAWDPLNQYVASKSSDRHPEGFSAKL-KQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLL 245 (434)
T ss_pred ccceeecchhhhhhhhhccCcccceeeeee-eeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEE
Confidence 8999999999999998 4555566666654 22221111 1 11122334446666554322 258999999999
Q ss_pred EEEeC----C-----CcEEEEecCCCceeeeeecCCCcceeEEEECC------------------CCCceeecCCCCeEE
Q 010256 414 ATGSY----S-----NLFRVFGCSEGSAESTTLEASKNPMRRQVQTP------------------SRPSRPLGSLSGVVR 466 (514)
Q Consensus 414 ~s~~~----d-----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~------------------~~~~l~s~s~d~~v~ 466 (514)
++.+. + +..++|+-+..+.....+.....+...+.++| .+-.+|.++ -..|.
T Consensus 246 vtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svy 324 (434)
T KOG1009|consen 246 VTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVY 324 (434)
T ss_pred EcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEE
Confidence 86532 2 23466665544444455555555555555543 222233333 34455
Q ss_pred EeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecCcEE
Q 010256 467 RVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLY 510 (514)
Q Consensus 467 i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~ 510 (514)
++++..... +.....-|-..|+.++|++||..|+..+.|+-+
T Consensus 325 vydtq~~~P--~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyC 366 (434)
T KOG1009|consen 325 VYDTQTLEP--LAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFC 366 (434)
T ss_pred Eeccccccc--eEEEeeeeeeeecceeecCCCcEEEEeccCCce
Confidence 555554331 111122378899999999999999999877654
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.2e-20 Score=171.28 Aligned_cols=409 Identities=13% Similarity=0.156 Sum_probs=245.9
Q ss_pred EEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEE
Q 010256 40 AIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (514)
Q Consensus 40 ~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~ 119 (514)
.-.||+|+++|+... +..|.||...++..+ +.+.+|. .++..+.
T Consensus 21 ~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i-----------------------~~l~~~~------------a~l~s~~ 64 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCT-GNFVKVYSTATGECI-----------------------TSLEDHT------------APLTSVI 64 (792)
T ss_pred ccccccCCcEEEEee-CCEEEEEecchHhhh-----------------------hhccccc------------Cccceee
Confidence 346899999887764 568999999988854 5678887 8899999
Q ss_pred EeeCCCC-cEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccC-------Ccceec-ccccCCceeecc----CCCcc
Q 010256 120 WCQSANS-ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAG-------NGPIFG-SHVSAIPKSYMA----NGGCG 186 (514)
Q Consensus 120 ~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~-~~~~~~~~~~~~----~~~~l 186 (514)
+.|++.. .++++++.||.|++||...+.+........+...... +..++. ......-..+++ .+..+
T Consensus 65 ~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~ 144 (792)
T KOG1963|consen 65 VLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRF 144 (792)
T ss_pred ecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeee
Confidence 9886654 5778999999999999999988777665544311100 000000 000000000000 01000
Q ss_pred ccc----------cCCC-CCCcccCCC-------CCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEE
Q 010256 187 ERN----------FGCA-SNDSSFPPG-------GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF 248 (514)
Q Consensus 187 ~~~----------~~~~-~~~~~~~~~-------~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 248 (514)
... .... ...+....+ .+..+.+|.+ +......+.+.....|...+.+.+++|.++++
T Consensus 145 ~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v----~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~ 220 (792)
T KOG1963|consen 145 VLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFV----PKHTKHTSSRDITVHHTFNITCVALSPNERYL 220 (792)
T ss_pred EeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEe----cccceeeccchhhhhhcccceeEEeccccceE
Confidence 000 0000 000111111 1123344441 11111122222235677789999999999999
Q ss_pred EEe-cCCeEEEEeccC-CCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccccccee
Q 010256 249 ISA-DDLRINLWNLEI-SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 326 (514)
Q Consensus 249 ~s~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 326 (514)
++| .||.|.+|.--. .... ..+..+..|...|.+++|+++| .+|++|+..+.+.+|.+.+++.
T Consensus 221 Aa~d~dGrI~vw~d~~~~~~~-----~t~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~T~~k--------- 285 (792)
T KOG1963|consen 221 AAGDSDGRILVWRDFGSSDDS-----ETCTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLETGKK--------- 285 (792)
T ss_pred EEeccCCcEEEEecccccccc-----ccceEEEecccccceeEEecCC-ceEeecccceEEEEEeecCCCc---------
Confidence 999 899999995432 1111 1123567799999999999999 8999999999999999998762
Q ss_pred ccCCCCccceeeccccceeEEEEecCCCEEEE-EeCCeEEEEEccCCCCceeee--------------------------
Q 010256 327 EQEAPGTRSFFTEIIASISDIKFARNGRHILS-RDYMTLKLWDINMDSGPVATF-------------------------- 379 (514)
Q Consensus 327 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~i~iwd~~~~~~~~~~~-------------------------- 379 (514)
.+++-..++|..+.+|||+.+.+. ..|..|.+-.... .....++
T Consensus 286 --------qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~d-l~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr 356 (792)
T KOG1963|consen 286 --------QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASD-LEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPR 356 (792)
T ss_pred --------ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccc-hhhhhhccCccCCCccccccccccceeEEEcCC
Confidence 223444578999999999988776 4678888877632 1111111
Q ss_pred ------eeccccccccccccccCCcc------------------ceeeEEEcCCCCEEEEEe--------CC--CcEEEE
Q 010256 380 ------QVHEHLRPKLCDLYENDSIF------------------DKFECCLSGDGGRVATGS--------YS--NLFRVF 425 (514)
Q Consensus 380 ------~~~~~~~~~~~~~~~~~~~~------------------~v~~~~~s~~~~~l~s~~--------~d--g~i~iw 425 (514)
.+|.+.+ +.-+++....++ .++.++.+..|.+++|.. .| -.+++|
T Consensus 357 ~~~~vln~~~g~v-Q~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW 435 (792)
T KOG1963|consen 357 TNSLVLNGHPGHV-QFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFW 435 (792)
T ss_pred CCceeecCCCceE-EEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEE
Confidence 1111110 011111111111 344556666778888753 22 356788
Q ss_pred ecCCCcee--e--eeecCCCcceeEEEEC-CCCC-ceeecCCCCeEEE--eeCCCC-Cccc----cC-CcccccccceEE
Q 010256 426 GCSEGSAE--S--TTLEASKNPMRRQVQT-PSRP-SRPLGSLSGVVRR--VKGADN-SALD----AN-GNAFDFSMKLLH 491 (514)
Q Consensus 426 d~~~~~~~--~--~~~~~~~~~v~~~~~~-~~~~-~l~s~s~d~~v~i--~~~~~~-~~~~----~~-~~~~~~~~~v~~ 491 (514)
-.....+. + .....|...+.+.++. +... ..+++|.||.+++ ..+.+. .+.. .. ...+ |..++++
T Consensus 436 ~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy-~k~~i~a 514 (792)
T KOG1963|consen 436 QYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSY-HKTPITA 514 (792)
T ss_pred EEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecc-ccCcccc
Confidence 66543221 1 3345787777666664 3333 7899999999999 211111 1000 00 0011 5789999
Q ss_pred EEEcCCCCEEEEEecCcEEEEeC
Q 010256 492 LAWHPSENSIACAASNSLYMYYA 514 (514)
Q Consensus 492 ~~~spd~~~l~~~~~~~~~i~~~ 514 (514)
++|+.||..|+++.++.+.+|..
T Consensus 515 ~~fs~dGslla~s~~~~Itiwd~ 537 (792)
T KOG1963|consen 515 LCFSQDGSLLAVSFDDTITIWDY 537 (792)
T ss_pred hhhcCCCcEEEEecCCEEEEecC
Confidence 99999999999999999999963
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-20 Score=175.85 Aligned_cols=239 Identities=18% Similarity=0.239 Sum_probs=186.7
Q ss_pred ccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEE
Q 010256 230 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 308 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~ 308 (514)
..|....+.++|.|+|+.|+++ .||.|++|+....... |.++..+...|.+++.. + +.|++|+.+++|.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~-------P~ti~~~g~~v~~ia~~--s-~~f~~~s~~~tv~ 79 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE-------PETIDISGELVSSIACY--S-NHFLTGSEQNTVL 79 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC-------CchhhccCceeEEEeec--c-cceEEeeccceEE
Confidence 5788889999999999999999 9999999998755322 22333367777777754 3 5899999999999
Q ss_pred EEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeecccccc
Q 010256 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRP 387 (514)
Q Consensus 309 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~ 387 (514)
+|.+..+..- ..+.. ..-+++.++|+.+|.+++.|++ -.|++-++.. ......+.+|...+
T Consensus 80 ~y~fps~~~~-~iL~R---------------ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D-~s~~~~lrgh~apV- 141 (933)
T KOG1274|consen 80 RYKFPSGEED-TILAR---------------FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDD-SSQEKVLRGHDAPV- 141 (933)
T ss_pred EeeCCCCCcc-ceeee---------------eeccceEEEEecCCcEEEeecCceeEEEEeccc-cchheeecccCCce-
Confidence 9999887631 11112 2247999999999999999876 8999999987 78888899998874
Q ss_pred ccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecC--------CCcceeEEEECCCCCceeec
Q 010256 388 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA--------SKNPMRRQVQTPSRPSRPLG 459 (514)
Q Consensus 388 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~s~ 459 (514)
.++.|+|++++||+.+-||.|++|++.++.. ..++.+ ....+..++|+|++..++..
T Consensus 142 --------------l~l~~~p~~~fLAvss~dG~v~iw~~~~~~~-~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~ 206 (933)
T KOG1274|consen 142 --------------LQLSYDPKGNFLAVSSCDGKVQIWDLQDGIL-SKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVP 206 (933)
T ss_pred --------------eeeeEcCCCCEEEEEecCceEEEEEcccchh-hhhcccCCccccccccceeeeeeecCCCCeEEee
Confidence 4999999999999999999999999998633 233332 14557789999999988889
Q ss_pred CCCCeEEE--eeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEe-cCcEEEEeC
Q 010256 460 SLSGVVRR--VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYYA 514 (514)
Q Consensus 460 s~d~~v~i--~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~~i~~~ 514 (514)
..|+.|++ ..+|.... .+..+ .+...+..++|+|.|++||+++ ++++.||+.
T Consensus 207 ~~d~~Vkvy~r~~we~~f-~Lr~~--~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv 261 (933)
T KOG1274|consen 207 PVDNTVKVYSRKGWELQF-KLRDK--LSSSKFSDLQWSPNGKYIAASTLDGQILVWNV 261 (933)
T ss_pred ccCCeEEEEccCCceehe-eeccc--ccccceEEEEEcCCCcEEeeeccCCcEEEEec
Confidence 99999999 56665552 12211 2344599999999999999887 888999973
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.8e-20 Score=153.25 Aligned_cols=281 Identities=19% Similarity=0.243 Sum_probs=196.3
Q ss_pred eeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCC
Q 010256 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (514)
Q Consensus 115 v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (514)
..++.| ++.|.+||+|+.||.|.|||+.+....
T Consensus 26 a~~~~F--s~~G~~lAvGc~nG~vvI~D~~T~~ia--------------------------------------------- 58 (405)
T KOG1273|consen 26 AECCQF--SRWGDYLAVGCANGRVVIYDFDTFRIA--------------------------------------------- 58 (405)
T ss_pred cceEEe--ccCcceeeeeccCCcEEEEEccccchh---------------------------------------------
Confidence 678889 677889999999999999998765310
Q ss_pred CCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeecc
Q 010256 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 273 (514)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~ 273 (514)
+ .+.+|..+|.+++|+++|+.|+++ .|..|.+||+..+....++
T Consensus 59 -------------------------------r-~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri--- 103 (405)
T KOG1273|consen 59 -------------------------------R-MLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI--- 103 (405)
T ss_pred -------------------------------h-hhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE---
Confidence 1 137899999999999999999999 9999999999977755443
Q ss_pred CCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCC
Q 010256 274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (514)
Q Consensus 274 ~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 353 (514)
...++|+.+.|+|...+.++..-.+..-.+-++..... ..+. ...+.... ..-.+..|.+.|
T Consensus 104 ------rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-----~~Lp-~d~d~dln------~sas~~~fdr~g 165 (405)
T KOG1273|consen 104 ------RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-----SVLP-KDDDGDLN------SSASHGVFDRRG 165 (405)
T ss_pred ------EccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-----eecc-CCCccccc------cccccccccCCC
Confidence 24788999999998766666666666666666654321 1111 11111111 122334688999
Q ss_pred CEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCc-
Q 010256 354 RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS- 431 (514)
Q Consensus 354 ~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~- 431 (514)
+++++|.. |.+.++|..+ .+++..++.... ..|-.+.|+..|++|+.-+.|..||.|+++.--
T Consensus 166 ~yIitGtsKGkllv~~a~t-~e~vas~rits~--------------~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~ 230 (405)
T KOG1273|consen 166 KYIITGTSKGKLLVYDAET-LECVASFRITSV--------------QAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDD 230 (405)
T ss_pred CEEEEecCcceEEEEecch-heeeeeeeechh--------------eeeeEEEEeccCcEEEEecCCceEEEEehhhhcc
Confidence 99999976 9999999997 677776654430 113378899999999999999999999986310
Q ss_pred -----eee--eeec--CCCcceeEEEECCCCCceeecCC-CCeEEEeeCCCCCccccCCcccccc-cceEEEEEcCCCCE
Q 010256 432 -----AES--TTLE--ASKNPMRRQVQTPSRPSRPLGSL-SGVVRRVKGADNSALDANGNAFDFS-MKLLHLAWHPSENS 500 (514)
Q Consensus 432 -----~~~--~~~~--~~~~~v~~~~~~~~~~~l~s~s~-d~~v~i~~~~~~~~~~~~~~~~~~~-~~v~~~~~spd~~~ 500 (514)
... +.+. ..+..-..++|+.+|.|+..++. ...+++... ....+..-..+.. .....++|+|-...
T Consensus 231 ~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~---~~GsLVKILhG~kgE~l~DV~whp~rp~ 307 (405)
T KOG1273|consen 231 EGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEK---SIGSLVKILHGTKGEELLDVNWHPVRPI 307 (405)
T ss_pred cCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEec---CCcceeeeecCCchhheeecccccceee
Confidence 000 1111 12334567899999999877763 345556211 1001111122233 56788999999999
Q ss_pred EEEEecCcEEEEe
Q 010256 501 IACAASNSLYMYY 513 (514)
Q Consensus 501 l~~~~~~~~~i~~ 513 (514)
|+.-..+.+++|.
T Consensus 308 i~si~sg~v~iw~ 320 (405)
T KOG1273|consen 308 IASIASGVVYIWA 320 (405)
T ss_pred eeeccCCceEEEE
Confidence 9999999999996
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.9e-20 Score=151.29 Aligned_cols=272 Identities=14% Similarity=0.248 Sum_probs=181.4
Q ss_pred ccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEe-cCCCcEEEEEecCC
Q 010256 228 YAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH-PTHCNMLAYSSSKG 305 (514)
Q Consensus 228 ~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~-p~~~~~l~~~~~dg 305 (514)
+..+|.+-|.++.|++.|+.+++| .|++|+|||.+......... .....|.+.|..+.|. |.-++.+|+++.|+
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~T----s~Wrah~~Si~rV~WAhPEfGqvvA~cS~Dr 83 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCT----SSWRAHDGSIWRVVWAHPEFGQVVATCSYDR 83 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEe----eeEEecCCcEEEEEecCccccceEEEEecCC
Confidence 347899999999999999999999 99999999976554433321 2457799999999995 43348999999999
Q ss_pred eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecC--CCEEEEE-eCCeEEEEEccCCCCceeeeeec
Q 010256 306 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN--GRHILSR-DYMTLKLWDINMDSGPVATFQVH 382 (514)
Q Consensus 306 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--g~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~ 382 (514)
++.||.-...... ..-+.+. .+..+....+.|+++.|.|. |-.|+++ .||.+|||+.-.+.. +......
T Consensus 84 tv~iWEE~~~~~~-~~~~~Wv------~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~n-Ls~W~Lq 155 (361)
T KOG2445|consen 84 TVSIWEEQEKSEE-AHGRRWV------RRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMN-LSQWTLQ 155 (361)
T ss_pred ceeeeeecccccc-cccceeE------EEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccc-cccchhh
Confidence 9999985321110 0011111 12334455578999999994 6677775 469999999765322 2222111
Q ss_pred cccccccccccccCCccceeeEEEcCC---CCEEEEEeCC-----CcEEEEecCCCce---eeeeecCCCcceeEEEECC
Q 010256 383 EHLRPKLCDLYENDSIFDKFECCLSGD---GGRVATGSYS-----NLFRVFGCSEGSA---ESTTLEASKNPMRRQVQTP 451 (514)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~s~~~d-----g~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~ 451 (514)
.+...-+.. ....-..-.++.|+|. ..+||.|+.+ +.++||....... ...++.+|..+|+.++|.|
T Consensus 156 ~Ei~~~~~p--p~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAP 233 (361)
T KOG2445|consen 156 HEIQNVIDP--PGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAP 233 (361)
T ss_pred hhhhhccCC--cccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecc
Confidence 111100000 0011112337888874 3578888766 5899998766542 2367889999999999998
Q ss_pred C----CCceeecCCCCeEEE--eeCCC--------CCc---ccc----CCcccccccceEEEEEcCCCCEEEEEe-cCcE
Q 010256 452 S----RPSRPLGSLSGVVRR--VKGAD--------NSA---LDA----NGNAFDFSMKLLHLAWHPSENSIACAA-SNSL 509 (514)
Q Consensus 452 ~----~~~l~s~s~d~~v~i--~~~~~--------~~~---~~~----~~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~ 509 (514)
+ ..+||+++.|| |+| +...+ ... ..+ ....-+|.++|..+.|+-.|..|++.+ ++.+
T Consensus 234 n~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~V 312 (361)
T KOG2445|consen 234 NIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCV 312 (361)
T ss_pred ccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCcee
Confidence 6 34799999999 888 22100 000 011 122336999999999999999999554 7778
Q ss_pred EEEeC
Q 010256 510 YMYYA 514 (514)
Q Consensus 510 ~i~~~ 514 (514)
.+|.|
T Consensus 313 RLWka 317 (361)
T KOG2445|consen 313 RLWKA 317 (361)
T ss_pred eehhh
Confidence 88864
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-19 Score=154.22 Aligned_cols=307 Identities=12% Similarity=0.084 Sum_probs=211.9
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|+++.||.++++||+|+.|..+++|+++..-... ..+. ..+.+|.
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k-----------------~~KP-I~~~~~~---------- 103 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRK-----------------TPKP-IGVMEHP---------- 103 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhc-----------------CCCC-ceeccCc----------
Confidence 46899999999999999999999999999999986322110 0001 1122221
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
|...|.|++| ....+.+++|..+++|.+.|+++.+...+...
T Consensus 104 H~SNIF~L~F--~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~------------------------------------ 145 (609)
T KOG4227|consen 104 HRSNIFSLEF--DLENRFLYSGERWGTVIKHDIETKQSIYVANE------------------------------------ 145 (609)
T ss_pred cccceEEEEE--ccCCeeEecCCCcceeEeeecccceeeeeecc------------------------------------
Confidence 1278999999 45557899999999999999998764433221
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
....+.|+.+..+|..+.|++. .++.|.+||.+.......
T Consensus 146 ---------------------------------------~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~ 186 (609)
T KOG4227|consen 146 ---------------------------------------NNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPIS 186 (609)
T ss_pred ---------------------------------------cCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCc
Confidence 1223578889999998899888 999999999986553332
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
.+ -+........++.|+|..+.+|++.+..+-+.+||.+..... ++.+.... .++.....-.++.|
T Consensus 187 ~~-----~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~---~~~~~~~~------~L~~~~~~~M~~~~ 252 (609)
T KOG4227|consen 187 LV-----LPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARP---VYQRSMFK------GLPQENTEWMGSLW 252 (609)
T ss_pred ee-----eecCCCccceeeeecCCCceeEEeccccCCCCceeeccccch---HHhhhccc------cCcccchhhhheee
Confidence 21 122345667899999999899999999999999999875432 22111110 01111123577899
Q ss_pred ecCCCEEEEEeC-CeEEEEEccCCCCceeeeee-ccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEec
Q 010256 350 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQV-HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (514)
Q Consensus 350 s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 427 (514)
+|+|..+.+-.. ..-.+||+-. .++ ..++. |... ..+.... +.+++|-.|- .+++|+.+=.|++|.+
T Consensus 253 ~~~G~Q~msiRR~~~P~~~D~~S-~R~-~V~k~D~N~~-----GY~N~~T---~KS~~F~~D~-~v~tGSD~~~i~~Wkl 321 (609)
T KOG4227|consen 253 SPSGNQFMSIRRGKCPLYFDFIS-QRC-FVLKSDHNPN-----GYCNIKT---IKSMTFIDDY-TVATGSDHWGIHIWKL 321 (609)
T ss_pred CCCCCeehhhhccCCCEEeeeec-ccc-eeEeccCCCC-----cceeeee---eeeeeeecce-eeeccCcccceEEEec
Confidence 999998887543 3445677764 222 22222 2210 0111112 2378887554 4999999999999997
Q ss_pred CCC----------------------ceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 428 SEG----------------------SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 428 ~~~----------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
... ......|++|.+-++++.|+|...+|++.+-...+++
T Consensus 322 P~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~Kl 383 (609)
T KOG4227|consen 322 PRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKL 383 (609)
T ss_pred CCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheec
Confidence 531 1123678899999999999999999999999999999
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-19 Score=153.96 Aligned_cols=298 Identities=18% Similarity=0.280 Sum_probs=197.1
Q ss_pred cchhhccccCcccccccccceEEEEEcC-----CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCcccee
Q 010256 18 KFSQVFGERTAGEEVQEVDIISAIEFDK-----SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY 92 (514)
Q Consensus 18 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~-----~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (514)
+|.++||+....+.--..=.|+-++|.. +.++|| .+|+...+...- ...+...+. ..+ -
T Consensus 10 KfRHVFgq~~K~e~CYddIrVs~~tWDS~fcavNPkfiA--------vi~easgGgaf~--ViPl~k~Gr---~d~---~ 73 (472)
T KOG0303|consen 10 KFRHVFGQPVKNDQCYDDIRVSRVTWDSSFCAVNPKFVA--------VIIEASGGGAFL--VIPLVKTGR---MDA---S 73 (472)
T ss_pred hhHHHhccccchhhhhcceeeeeeeccccccccCCceEE--------EEEecCCCccee--ecccccccc---cCC---C
Confidence 5778888877665555556777787764 334444 355554443210 000000000 000 1
Q ss_pred eeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccc
Q 010256 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (514)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (514)
+-.+.||. +.|..++|+|..| ..+|+|+.|-+|.||.+..+-+.....
T Consensus 74 ~P~v~GHt------------~~vLDi~w~PfnD-~vIASgSeD~~v~vW~IPe~~l~~~lt------------------- 121 (472)
T KOG0303|consen 74 YPLVCGHT------------APVLDIDWCPFND-CVIASGSEDTKVMVWQIPENGLTRDLT------------------- 121 (472)
T ss_pred CCCccCcc------------ccccccccCccCC-ceeecCCCCceEEEEECCCcccccCcc-------------------
Confidence 12467888 9999999998655 689999999999999987654221110
Q ss_pred cCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC-CCEEEEe
Q 010256 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA 251 (514)
Q Consensus 173 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~ 251 (514)
++.. .+.+|...|--++|+|. .+.|+++
T Consensus 122 --------------------------------------------------epvv-~L~gH~rrVg~V~wHPtA~NVLlsa 150 (472)
T KOG0303|consen 122 --------------------------------------------------EPVV-ELYGHQRRVGLVQWHPTAPNVLLSA 150 (472)
T ss_pred --------------------------------------------------cceE-EEeecceeEEEEeecccchhhHhhc
Confidence 0111 14899999999999997 5667777
Q ss_pred -cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCC
Q 010256 252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (514)
Q Consensus 252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 330 (514)
.|.+|.+|++.+++..+. +. |.+.|+++.|+-+| .+|++.+.|..|||||.++++....- ..|+.
T Consensus 151 g~Dn~v~iWnv~tgeali~--------l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v~e~----~~heG 216 (472)
T KOG0303|consen 151 GSDNTVSIWNVGTGEALIT--------LD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVVSEG----VAHEG 216 (472)
T ss_pred cCCceEEEEeccCCceeee--------cC-CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcEeeec----ccccC
Confidence 999999999998887764 33 99999999999999 89999999999999999999875321 12211
Q ss_pred CCccceeeccccceeEEEEecCCCEEEEE----eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEE
Q 010256 331 PGTRSFFTEIIASISDIKFARNGRHILSR----DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 406 (514)
Q Consensus 331 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~----~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 406 (514)
..-..+.|-.+|.++.+| ++..+-+||...-.+++........ .+|.---|
T Consensus 217 -----------~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS--------------nGvl~PFy 271 (472)
T KOG0303|consen 217 -----------AKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTS--------------NGVLLPFY 271 (472)
T ss_pred -----------CCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccC--------------CceEEeee
Confidence 123456677788866665 3589999998764444332222211 11233456
Q ss_pred cCCCCEEE-EEeCCCcEEEEecCCCceeeeeecC--CCcceeEEEECCCC
Q 010256 407 SGDGGRVA-TGSYSNLFRVFGCSEGSAESTTLEA--SKNPMRRQVQTPSR 453 (514)
Q Consensus 407 s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~ 453 (514)
.+|.+++. +|-.|+.||.|.+.....-...+.. ..++-+.+.+.|..
T Consensus 272 D~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPKR 321 (472)
T KOG0303|consen 272 DPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPKR 321 (472)
T ss_pred cCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCccccccccccc
Confidence 78888766 4558999999999876544444443 34566667776653
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.3e-20 Score=158.77 Aligned_cols=251 Identities=16% Similarity=0.202 Sum_probs=183.4
Q ss_pred ccCccCeEEEEECCCC--CEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCe
Q 010256 230 HAHDYHINSISNNSDG--ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 306 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~--~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~ 306 (514)
..+..+|.+++|+|.. +++++| ..|+|-+||+.+.+....-+ ..+..|..+|.++.|+|.....+++.+.||+
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v----~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV----YLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce----EEeccCCccccceEecCCChhheeeeccCce
Confidence 5677999999999974 467778 79999999996433322110 1356789999999999998889999999999
Q ss_pred EEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeecccc
Q 010256 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHL 385 (514)
Q Consensus 307 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~ 385 (514)
|++-|++.+..- .+...+.. ...+.++.|+.+...++.+++ |...+||+++++.....+..|...
T Consensus 259 iR~~D~~~~i~e--~v~s~~~d------------~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kK 324 (498)
T KOG4328|consen 259 IRLQDFEGNISE--EVLSLDTD------------NIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKK 324 (498)
T ss_pred eeeeeecchhhH--HHhhcCcc------------ceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcc
Confidence 999999876431 12222211 146788999988888888877 999999999977767777777653
Q ss_pred ccccccccccCCccceeeEEEcCCC-CEEEEEeCCCcEEEEecCCCcee---eeeecCCCcceeEEEECCCCCceeecCC
Q 010256 386 RPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCSEGSAE---STTLEASKNPMRRQVQTPSRPSRPLGSL 461 (514)
Q Consensus 386 ~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~s~s~ 461 (514)
|.+++++|-. .+|||++.|++.+|||++.-... ....-.|+.+|.+..|||++..|++-+.
T Consensus 325 ---------------I~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~ 389 (498)
T KOG4328|consen 325 ---------------ITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ 389 (498)
T ss_pred ---------------cceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc
Confidence 3389999965 46889999999999999764322 2345589999999999999999999999
Q ss_pred CCeEEEeeCCCCCccccCCcccccc------cceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 462 SGVVRRVKGADNSALDANGNAFDFS------MKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 462 d~~v~i~~~~~~~~~~~~~~~~~~~------~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
|..||++++..+..-......+.|. -.....+|.||.++|++|. .+.+-||.
T Consensus 390 D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 390 DNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred CCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence 9999996663221100000111111 1335678999999999886 44444443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-19 Score=164.60 Aligned_cols=270 Identities=15% Similarity=0.242 Sum_probs=201.1
Q ss_pred ceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccccee
Q 010256 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (514)
Q Consensus 37 ~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 116 (514)
.|+.++|-|||..|+.+. +..+.|||..++. .+.++++|. +.|+
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~-----------------------llqtLKgHK------------DtVy 57 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGT-----------------------LLQPLKGHK------------DTVY 57 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcc-----------------------ccccccccc------------ceEE
Confidence 799999999999888775 5579999998776 447889998 9999
Q ss_pred EEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCC
Q 010256 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND 196 (514)
Q Consensus 117 ~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 196 (514)
+++| +.||+.+++|+.|+.|.+|+.+-.-
T Consensus 58 cVAy--s~dGkrFASG~aDK~VI~W~~klEG------------------------------------------------- 86 (1081)
T KOG1538|consen 58 CVAY--AKDGKRFASGSADKSVIIWTSKLEG------------------------------------------------- 86 (1081)
T ss_pred EEEE--ccCCceeccCCCceeEEEecccccc-------------------------------------------------
Confidence 9999 7899999999999999999754211
Q ss_pred cccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCC
Q 010256 197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPA 276 (514)
Q Consensus 197 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~ 276 (514)
.+ ...|.+.|.|+.|+|-...|+++.=...-+|..+.. ...
T Consensus 87 ---------~L---------------------kYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK-~V~-------- 127 (1081)
T KOG1538|consen 87 ---------IL---------------------KYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQK-SVS-------- 127 (1081)
T ss_pred ---------ee---------------------eeccCCeeeEeecCchHHHhhhcchhhccccChhhh-hHH--------
Confidence 11 156889999999999999999985555678987632 221
Q ss_pred cccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCC---
Q 010256 277 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG--- 353 (514)
Q Consensus 277 ~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g--- 353 (514)
-......+.+.+|..|| .+|+.|-.+|+|.+-+-. ++.. -.++. -.+.+++|.+++|+|..
T Consensus 128 -K~kss~R~~~CsWtnDG-qylalG~~nGTIsiRNk~-gEek----~~I~R---------pgg~Nspiwsi~~~p~sg~G 191 (1081)
T KOG1538|consen 128 -KHKSSSRIICCSWTNDG-QYLALGMFNGTISIRNKN-GEEK----VKIER---------PGGSNSPIWSICWNPSSGEG 191 (1081)
T ss_pred -hhhhheeEEEeeecCCC-cEEEEeccCceEEeecCC-CCcc----eEEeC---------CCCCCCCceEEEecCCCCCC
Confidence 11235678899999999 899999999999987542 2221 11111 12234789999999953
Q ss_pred --CEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 354 --RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 354 --~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
..++..+- .++.++.+. ++.+..-..-. ++-.++.+-++|+|+..|+.|+.+++|-.+
T Consensus 192 ~~di~aV~DW~qTLSFy~Ls--G~~Igk~r~L~---------------FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-- 252 (1081)
T KOG1538|consen 192 RNDILAVADWGQTLSFYQLS--GKQIGKDRALN---------------FDPCCISYFTNGEYILLGGSDKQLSLFTRD-- 252 (1081)
T ss_pred ccceEEEEeccceeEEEEec--ceeecccccCC---------------CCchhheeccCCcEEEEccCCCceEEEeec--
Confidence 34444544 667777765 33332111100 011178889999999999999999999765
Q ss_pred ceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 431 SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 431 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
..+..++-....+|+.+...|++++++.|..||++.-
T Consensus 253 GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiAC 289 (1081)
T KOG1538|consen 253 GVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIAC 289 (1081)
T ss_pred CeEEeeccccceeEEEEEEccCCceEEEEEccCeeeh
Confidence 3445677677889999999999999999999999976
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.1e-20 Score=158.62 Aligned_cols=266 Identities=16% Similarity=0.204 Sum_probs=176.5
Q ss_pred eEEEEEcC-------CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 38 ISAIEFDK-------SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 38 V~~~~~s~-------~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
-.|++|-. -|+|+|.|+.|..|.|||+.=...+-++ -.|........ ....+....-.+|.
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~-~~LGs~~sk~~-~k~~k~~~~~~gHT---------- 243 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPC-VTLGSKASKKK-KKKGKRSNSASGHT---------- 243 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccc-eeechhhhhhh-hhhcccccccccch----------
Confidence 35666643 3689999999999999998633221000 00000000000 00000111133565
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
+.|.++.|+. .....|++|+.|.+|++||+.++++...
T Consensus 244 --davl~Ls~n~-~~~nVLaSgsaD~TV~lWD~~~g~p~~s--------------------------------------- 281 (463)
T KOG0270|consen 244 --DAVLALSWNR-NFRNVLASGSADKTVKLWDVDTGKPKSS--------------------------------------- 281 (463)
T ss_pred --HHHHHHHhcc-ccceeEEecCCCceEEEEEcCCCCccee---------------------------------------
Confidence 8899999964 3345899999999999999999875432
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC-CCEEEEe-cCCeEEEEeccCCCcee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSF 268 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~ 268 (514)
+..|.+.|.+++|+|. ..+|++| .|++|.+.|.+.....-
T Consensus 282 --------------------------------------~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~ 323 (463)
T KOG0270|consen 282 --------------------------------------ITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSG 323 (463)
T ss_pred --------------------------------------hhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccC
Confidence 1456788999999986 6788889 89999999998533222
Q ss_pred eeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEE
Q 010256 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (514)
Q Consensus 269 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (514)
.. -...+.|-.++|.|.....+++++.||+++-+|+|+...+ +. .+..|.++|.+++
T Consensus 324 ~~--------wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~---vw------------t~~AHd~~ISgl~ 380 (463)
T KOG0270|consen 324 KE--------WKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKP---VW------------TLKAHDDEISGLS 380 (463)
T ss_pred ce--------EEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCc---ee------------EEEeccCCcceEE
Confidence 11 1136789999999998888999999999999999986422 22 3556778999999
Q ss_pred EecCCCE-EEEE-eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCC-EEEEEeCCCcEEEE
Q 010256 349 FARNGRH-ILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYSNLFRVF 425 (514)
Q Consensus 349 ~s~~g~~-l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw 425 (514)
+++.-.. ++++ .++.|++|++.. ..+ .....|.-....+ .|.++.|+-- .|+.|+..+.++||
T Consensus 381 ~n~~~p~~l~t~s~d~~Vklw~~~~-~~~-~~v~~~~~~~~rl------------~c~~~~~~~a~~la~GG~k~~~~vw 446 (463)
T KOG0270|consen 381 VNIQTPGLLSTASTDKVVKLWKFDV-DSP-KSVKEHSFKLGRL------------HCFALDPDVAFTLAFGGEKAVLRVW 446 (463)
T ss_pred ecCCCCcceeeccccceEEEEeecC-CCC-cccccccccccce------------eecccCCCcceEEEecCccceEEEe
Confidence 9986554 4444 459999999974 222 2222222211111 1556666544 57788888889999
Q ss_pred ecCCCce
Q 010256 426 GCSEGSA 432 (514)
Q Consensus 426 d~~~~~~ 432 (514)
|+.+...
T Consensus 447 d~~~~~~ 453 (463)
T KOG0270|consen 447 DIFTNSP 453 (463)
T ss_pred ecccChh
Confidence 9987643
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-19 Score=147.63 Aligned_cols=256 Identities=13% Similarity=0.143 Sum_probs=176.9
Q ss_pred cccCccCeEEEEECCCCC-EEEEe-c---C----CeEEEEeccCCCceeeeeccCC-Cccc-ccCCceEEEEEecCCCcE
Q 010256 229 AHAHDYHINSISNNSDGE-TFISA-D---D----LRINLWNLEISNQSFNIVDVKP-ANME-DLTEVITSAEFHPTHCNM 297 (514)
Q Consensus 229 ~~~h~~~v~~~~~~~~~~-~l~s~-~---d----~~i~iwd~~~~~~~~~~~~~~~-~~~~-~~~~~i~~v~~~p~~~~~ 297 (514)
+..|.+.|+.++-+|..+ .|+++ . | -.+.||.+......-....... ..+. .+-+.|.++.|.|++ ..
T Consensus 59 f~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns-~k 137 (370)
T KOG1007|consen 59 FFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS-DK 137 (370)
T ss_pred hhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC-Ce
Confidence 367789999999999654 55555 3 1 3477998874433211000000 1122 344689999999998 67
Q ss_pred EEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec--CCCEEEEEeCCeEEEEEccCCCCc
Q 010256 298 LAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR--NGRHILSRDYMTLKLWDINMDSGP 375 (514)
Q Consensus 298 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~g~~l~~~~~~~i~iwd~~~~~~~ 375 (514)
+++-. |..|.+|++..+..+.. .+.... -.++....++-+|+| +|..+++.+++++..||+++..+.
T Consensus 138 lasm~-dn~i~l~~l~ess~~va---ev~ss~-------s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~ 206 (370)
T KOG1007|consen 138 LASMD-DNNIVLWSLDESSKIVA---EVLSSE-------SAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKN 206 (370)
T ss_pred eEEec-cCceEEEEcccCcchhe---eecccc-------cccccceecccccCCCCccceEEEeCCCcEEEEEccchhhh
Confidence 77655 88999999988765321 111111 112445688889998 889999999999999999983333
Q ss_pred eeeeeeccccccccccccccCCccceeeEEEcCCCC-EEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCC-C
Q 010256 376 VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS-R 453 (514)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~ 453 (514)
...-..|... |..+.|+|+.+ +|+++++||.|+|||.+..+...+.+.+|.-.|+++.|+|. .
T Consensus 207 ~sI~dAHgq~---------------vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hd 271 (370)
T KOG1007|consen 207 NSIEDAHGQR---------------VRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHD 271 (370)
T ss_pred cchhhhhcce---------------eeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccc
Confidence 3333445443 33899999887 47899999999999999887778999999999999999985 4
Q ss_pred CceeecCCCCeEEE-----ee-------CC--------------CCCccccCCcccccccceEEEEEcCCCCEEE-EEec
Q 010256 454 PSRPLGSLSGVVRR-----VK-------GA--------------DNSALDANGNAFDFSMKLLHLAWHPSENSIA-CAAS 506 (514)
Q Consensus 454 ~~l~s~s~d~~v~i-----~~-------~~--------------~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~-~~~~ 506 (514)
++|++||.|..|.+ .. +. ++..+-....+-+|...|++++||.-..+|. +-+.
T Consensus 272 qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSY 351 (370)
T KOG1007|consen 272 QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSY 351 (370)
T ss_pred eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEecc
Confidence 68899999999998 11 00 1111111223447999999999999988876 4455
Q ss_pred CcEEE
Q 010256 507 NSLYM 511 (514)
Q Consensus 507 ~~~~i 511 (514)
+|-.|
T Consensus 352 DGRvi 356 (370)
T KOG1007|consen 352 DGRVI 356 (370)
T ss_pred CceEE
Confidence 54444
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.1e-20 Score=153.40 Aligned_cols=266 Identities=15% Similarity=0.245 Sum_probs=182.0
Q ss_pred ccccceEEEEEcCC----CCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccc
Q 010256 33 QEVDIISAIEFDKS----GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (514)
Q Consensus 33 ~h~~~V~~~~~s~~----g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (514)
.|...-..++|+-| ..+||.|+.-|.|+|.|+.+++. ...+.+|.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~-----------------------~~~~~ghG-------- 135 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQC-----------------------SKNYRGHG-------- 135 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhh-----------------------ccceeccC--------
Confidence 46677788888763 35899999999999999987763 35678888
Q ss_pred cccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccc
Q 010256 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (514)
Q Consensus 109 ~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (514)
..|+.|.++|.. .+++++++.|..||+|++++..+..++..
T Consensus 136 ----~sINeik~~p~~-~qlvls~SkD~svRlwnI~~~~Cv~VfGG---------------------------------- 176 (385)
T KOG1034|consen 136 ----GSINEIKFHPDR-PQLVLSASKDHSVRLWNIQTDVCVAVFGG---------------------------------- 176 (385)
T ss_pred ----ccchhhhcCCCC-CcEEEEecCCceEEEEeccCCeEEEEecc----------------------------------
Confidence 889999998744 36999999999999999999886654331
Q ss_pred ccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCce
Q 010256 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (514)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 267 (514)
..+|.+.|.++.|+++|.+|+++ .|.+|++|++...+-.
T Consensus 177 ----------------------------------------~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~ 216 (385)
T KOG1034|consen 177 ----------------------------------------VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFK 216 (385)
T ss_pred ----------------------------------------cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHh
Confidence 26899999999999999999998 9999999999843211
Q ss_pred --eee-ecc---------------CC--CcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcC-CCcccccccccee
Q 010256 268 --FNI-VDV---------------KP--ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR-QSALCDTHSKLFE 326 (514)
Q Consensus 268 --~~~-~~~---------------~~--~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~-~~~~~~~~~~~~~ 326 (514)
++. +.. -| .+..-|...|-|+.|- | +++++-+-++.|..|..- -.+.. ...+
T Consensus 217 ~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--g-d~ilSkscenaI~~w~pgkl~e~~----~~vk 289 (385)
T KOG1034|consen 217 NKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--G-DFILSKSCENAIVCWKPGKLEESI----HNVK 289 (385)
T ss_pred hhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--h-hheeecccCceEEEEecchhhhhh----hccC
Confidence 000 000 00 0223466667777775 3 588888889999999872 22111 1010
Q ss_pred ccCC-CCccceeeccccceeEEE--EecCCCEEEEEeC-CeEEEEEccCCCCc-eeeeeeccccccccccccccCCccce
Q 010256 327 EQEA-PGTRSFFTEIIASISDIK--FARNGRHILSRDY-MTLKLWDINMDSGP-VATFQVHEHLRPKLCDLYENDSIFDK 401 (514)
Q Consensus 327 ~~~~-~~~~~~~~~~~~~i~~~~--~s~~g~~l~~~~~-~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v 401 (514)
.++. ......+.-....|.-+. |.|.++.||.|.. |.|.+||++. ..+ ..+-..|..... .|
T Consensus 290 p~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~-~ep~~~ttl~~s~~~~------------tV 356 (385)
T KOG1034|consen 290 PPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDN-NEPPKCTTLTHSKSGS------------TV 356 (385)
T ss_pred CCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCC-CCCccCceEEeccccc------------ee
Confidence 0000 000011111223455554 5577899999877 9999999997 333 222222221111 13
Q ss_pred eeEEEcCCCCEEEEEeCCCcEEEEecC
Q 010256 402 FECCLSGDGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 402 ~~~~~s~~~~~l~s~~~dg~i~iwd~~ 428 (514)
-..+|+.||.+|+...+|+.|.-||.-
T Consensus 357 RQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 357 RQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred eeeeecccCcEEEEEeCCCcEEEEEee
Confidence 378999999999999999999999854
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9e-19 Score=143.60 Aligned_cols=208 Identities=13% Similarity=0.228 Sum_probs=153.4
Q ss_pred ccCccCeEEEEECC-CCCEEEEe-cCCeEEEEeccCCCc-eeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCe
Q 010256 230 HAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQ-SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 306 (514)
Q Consensus 230 ~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~ 306 (514)
..+..++++..|+. +.++|.++ -|-+..+||++++.. .++. .+-.|...|..|+|...+...||+.+.||.
T Consensus 147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkT------QLIAHDKEV~DIaf~~~s~~~FASvgaDGS 220 (364)
T KOG0290|consen 147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKT------QLIAHDKEVYDIAFLKGSRDVFASVGADGS 220 (364)
T ss_pred cccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceee------EEEecCcceeEEEeccCccceEEEecCCCc
Confidence 34557888999986 46677777 799999999997622 1111 456799999999999987789999999999
Q ss_pred EEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecC-CCEEEE-EeC-CeEEEEEccCCCCceeeeeecc
Q 010256 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN-GRHILS-RDY-MTLKLWDINMDSGPVATFQVHE 383 (514)
Q Consensus 307 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~~-~~~-~~i~iwd~~~~~~~~~~~~~~~ 383 (514)
+|+||+|...-- .-.++.++. ..+...++|++. -+++|+ +-+ ..|.|.|++.+..++.++.+|.
T Consensus 221 vRmFDLR~leHS---TIIYE~p~~----------~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~ 287 (364)
T KOG0290|consen 221 VRMFDLRSLEHS---TIIYEDPSP----------STPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQ 287 (364)
T ss_pred EEEEEecccccc---eEEecCCCC----------CCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCc
Confidence 999999975421 222333221 246788999874 456666 445 8999999999999999999999
Q ss_pred ccccccccccccCCccceeeEEEcCCC-CEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCC
Q 010256 384 HLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLS 462 (514)
Q Consensus 384 ~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d 462 (514)
..++ .++|.|.. ..|+++++|..+.|||+.+.-.. .-.++ .|+
T Consensus 288 a~VN---------------gIaWaPhS~~hictaGDD~qaliWDl~q~~~~-----~~~dP-----------ila----- 331 (364)
T KOG0290|consen 288 ASVN---------------GIAWAPHSSSHICTAGDDCQALIWDLQQMPRE-----NGEDP-----------ILA----- 331 (364)
T ss_pred cccc---------------ceEecCCCCceeeecCCcceEEEEeccccccc-----CCCCc-----------hhh-----
Confidence 8754 89999965 57999999999999999854210 00011 000
Q ss_pred CeEEEeeCCCCCccccCCcccccccceEEEEEcCC-CCEEEEEecCcEEEE
Q 010256 463 GVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPS-ENSIACAASNSLYMY 512 (514)
Q Consensus 463 ~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd-~~~l~~~~~~~~~i~ 512 (514)
+...++|+.++|+|. ..+|+++..+.+-+.
T Consensus 332 --------------------y~a~~EVNqi~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 332 --------------------YTAGGEVNQIQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred --------------------hhccceeeeeeecccCCCEEEEEecCeeeEE
Confidence 013688999999964 789999988877654
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-20 Score=182.08 Aligned_cols=277 Identities=16% Similarity=0.255 Sum_probs=200.5
Q ss_pred ccccccchhhccccCcccccccccceEEEEEcCCCCe----EEEecCCCeEEEEEecCCcccCCcccccccccccccCCc
Q 010256 13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDH----LATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHP 88 (514)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~----l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (514)
+..+.+|...-++..+...++-...-+.++|.+.|.. ||.|..||.|.+||...-.. ..
T Consensus 42 Eifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~-----------------~~ 104 (1049)
T KOG0307|consen 42 EIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA-----------------NA 104 (1049)
T ss_pred ceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCCceEEecchhhcc-----------------Cc
Confidence 3344444443333344445566788899999998876 88899999999999764210 01
Q ss_pred cceeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCccee
Q 010256 89 EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIF 168 (514)
Q Consensus 89 ~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~ 168 (514)
+...+..+..|+ +.|..+.|++.. +..|++|+.||.|.|||+.+-+.
T Consensus 105 ~~~~la~~~~h~------------G~V~gLDfN~~q-~nlLASGa~~geI~iWDlnn~~t-------------------- 151 (1049)
T KOG0307|consen 105 SEEVLATKSKHT------------GPVLGLDFNPFQ-GNLLASGADDGEILIWDLNKPET-------------------- 151 (1049)
T ss_pred chHHHhhhcccC------------CceeeeeccccC-CceeeccCCCCcEEEeccCCcCC--------------------
Confidence 223455667777 899999997643 45999999999999999986421
Q ss_pred cccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC-CCE
Q 010256 169 GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GET 247 (514)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~ 247 (514)
.+++.+ ....+.|.+++|+.. ...
T Consensus 152 ---------P~~~~~----------------------------------------------~~~~~eI~~lsWNrkvqhI 176 (1049)
T KOG0307|consen 152 ---------PFTPGS----------------------------------------------QAPPSEIKCLSWNRKVSHI 176 (1049)
T ss_pred ---------CCCCCC----------------------------------------------CCCcccceEeccchhhhHH
Confidence 000000 122367899999876 556
Q ss_pred EEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCC---eEEEEEcCCCcccccccc
Q 010256 248 FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---SIRLIDMRQSALCDTHSK 323 (514)
Q Consensus 248 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~~~ 323 (514)
|+++ .+|.+.|||++..+..+++ ........+..++|+|++...+++++.|. .|.+||+|.-... .+
T Consensus 177 LAS~s~sg~~~iWDlr~~~pii~l------s~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP---~k 247 (1049)
T KOG0307|consen 177 LASGSPSGRAVIWDLRKKKPIIKL------SDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSP---LK 247 (1049)
T ss_pred hhccCCCCCceeccccCCCccccc------ccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCc---hh
Confidence 7777 8999999999977666543 22222345789999999978888888765 5999999875432 33
Q ss_pred ceeccCCCCccceeeccccceeEEEEecCC-CEEEEE-eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccce
Q 010256 324 LFEEQEAPGTRSFFTEIIASISDIKFARNG-RHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 401 (514)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 401 (514)
.+++|...|.++.|++.+ ++|+++ .|++|.+|+.++ ++.+..+.....+ +
T Consensus 248 ------------~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~t-gEvl~~~p~~~nW---------------~ 299 (1049)
T KOG0307|consen 248 ------------ILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNT-GEVLGELPAQGNW---------------C 299 (1049)
T ss_pred ------------hhcccccceeeeccCCCCchhhhcccCCCCeeEecCCC-ceEeeecCCCCcc---------------e
Confidence 345666899999999966 777774 569999999998 8888888765444 3
Q ss_pred eeEEEcCCCC-EEEEEeCCCcEEEEecCCCc
Q 010256 402 FECCLSGDGG-RVATGSYSNLFRVFGCSEGS 431 (514)
Q Consensus 402 ~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~ 431 (514)
+.+.|.|..- .++.++-||.|.||.+....
T Consensus 300 fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 300 FDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 4899999765 78888999999999998653
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.6e-18 Score=135.91 Aligned_cols=299 Identities=13% Similarity=0.137 Sum_probs=194.8
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccce
Q 010256 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (514)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (514)
..|-+-+++|.+++|+.|..+|.|.+..+..--.. .+..|....+..+++|+ .+|
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~-------------sa~~~gk~~iv~eqahd------------gpi 65 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSG-------------SAEPPGKLKIVPEQAHD------------GPI 65 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcc-------------ccCCCCCcceeeccccC------------CCe
Confidence 34667789999999999999999999998643221 11223333445568898 999
Q ss_pred eEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCC
Q 010256 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (514)
Q Consensus 116 ~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (514)
+.++|. . .+|++++ ||.|+=|.........
T Consensus 66 y~~~f~--d--~~Lls~g-dG~V~gw~W~E~~es~--------------------------------------------- 95 (325)
T KOG0649|consen 66 YYLAFH--D--DFLLSGG-DGLVYGWEWNEEEESL--------------------------------------------- 95 (325)
T ss_pred eeeeee--h--hheeecc-CceEEEeeehhhhhhc---------------------------------------------
Confidence 999994 2 3566665 4999999876543100
Q ss_pred CcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccC
Q 010256 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 274 (514)
Q Consensus 196 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~ 274 (514)
+.-++|. ... +.+.- ...-..|+++...|..+-++.+ .|+.++.||+++++...
T Consensus 96 ---------~~K~lwe----~~~-----P~~~~-~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r------ 150 (325)
T KOG0649|consen 96 ---------ATKRLWE----VKI-----PMQVD-AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQR------ 150 (325)
T ss_pred ---------cchhhhh----hcC-----ccccC-cccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEE------
Confidence 0111121 100 00000 1112568999999886665555 99999999999776543
Q ss_pred CCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccc-cceeEEEEecCC
Q 010256 275 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII-ASISDIKFARNG 353 (514)
Q Consensus 275 ~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~~g 353 (514)
.+.+|.+.+.+++--... ..+++|++||++|+||.++++.. ++++....+ ..+..|. ..|.+++-+ .
T Consensus 151 --~~rGHtDYvH~vv~R~~~-~qilsG~EDGtvRvWd~kt~k~v----~~ie~yk~~---~~lRp~~g~wigala~~--e 218 (325)
T KOG0649|consen 151 --EYRGHTDYVHSVVGRNAN-GQILSGAEDGTVRVWDTKTQKHV----SMIEPYKNP---NLLRPDWGKWIGALAVN--E 218 (325)
T ss_pred --EEcCCcceeeeeeecccC-cceeecCCCccEEEEecccccee----EEeccccCh---hhcCcccCceeEEEecc--C
Confidence 678999999999985544 57899999999999999998863 333332221 1123232 357777765 5
Q ss_pred CEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCcee
Q 010256 354 RHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 354 ~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
.++++|....+.+|+++. .++..++...... ..+.|- ...+++++..+.|.-|.+. ..+
T Consensus 219 dWlvCGgGp~lslwhLrs-se~t~vfpipa~v----------------~~v~F~--~d~vl~~G~g~~v~~~~l~--Gvl 277 (325)
T KOG0649|consen 219 DWLVCGGGPKLSLWHLRS-SESTCVFPIPARV----------------HLVDFV--DDCVLIGGEGNHVQSYTLN--GVL 277 (325)
T ss_pred ceEEecCCCceeEEeccC-CCceEEEecccce----------------eEeeee--cceEEEeccccceeeeeec--cEE
Confidence 699999888999999997 7777777654432 146664 4567778888899999876 233
Q ss_pred eeeecCCCcceeEEEEC-CCCCceeecCCCCeEEE
Q 010256 434 STTLEASKNPMRRQVQT-PSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 434 ~~~~~~~~~~v~~~~~~-~~~~~l~s~s~d~~v~i 467 (514)
...........+...++ ..-++|..++..+.+.+
T Consensus 278 ~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i 312 (325)
T KOG0649|consen 278 QANIPVESTACYSASWQTSPIKFISIAGFSNKLHI 312 (325)
T ss_pred EEeccCCccceeeecccCCceEEEEecccceeeee
Confidence 33444333333344332 22456666666666666
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.1e-19 Score=153.94 Aligned_cols=197 Identities=16% Similarity=0.276 Sum_probs=150.6
Q ss_pred ccCccCeEEEEECCC-CCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010256 230 HAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 307 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i 307 (514)
.+|+..|.+++|+.. .+.|++| .|.+|++||+.+++... ++..|...|.++.|+|..+.+|++|+.|+++
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~--------s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V 311 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKS--------SITHHGKKVQTLEWHPYEPSVLLSGSYDGTV 311 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcce--------ehhhcCCceeEEEecCCCceEEEeccccceE
Confidence 689999999999876 6678888 89999999999877553 4567899999999999998999999999999
Q ss_pred EEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCE-EEEEe-CCeEEEEEccCCCCceeeeeecccc
Q 010256 308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH-ILSRD-YMTLKLWDINMDSGPVATFQVHEHL 385 (514)
Q Consensus 308 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~ 385 (514)
.+.|.|..... -+.|+. .+.|-.++|.|.... ++++. +|+|+-+|++.+++++.+++.|...
T Consensus 312 ~l~D~R~~~~s---~~~wk~-------------~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ 375 (463)
T KOG0270|consen 312 ALKDCRDPSNS---GKEWKF-------------DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDE 375 (463)
T ss_pred EeeeccCcccc---CceEEe-------------ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCC
Confidence 99999952221 122222 157899999996654 33454 4999999999988999999999987
Q ss_pred ccccccccccCCccceeeEEEcCC-CCEEEEEeCCCcEEEEecCCCceeeeeecCCC---cceeEEEECCCCC-ceeecC
Q 010256 386 RPKLCDLYENDSIFDKFECCLSGD-GGRVATGSYSNLFRVFGCSEGSAESTTLEASK---NPMRRQVQTPSRP-SRPLGS 460 (514)
Q Consensus 386 ~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~-~l~s~s 460 (514)
+. ++++++. ..+|++++.|+.|++|++..... .....|. +...++++.|+-. ++|.|+
T Consensus 376 IS---------------gl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~--~~v~~~~~~~~rl~c~~~~~~~a~~la~GG 438 (463)
T KOG0270|consen 376 IS---------------GLSVNIQTPGLLSTASTDKVVKLWKFDVDSP--KSVKEHSFKLGRLHCFALDPDVAFTLAFGG 438 (463)
T ss_pred cc---------------eEEecCCCCcceeeccccceEEEEeecCCCC--cccccccccccceeecccCCCcceEEEecC
Confidence 54 7888764 45788999999999999875432 1222222 2344556666655 577787
Q ss_pred CCCeEEE
Q 010256 461 LSGVVRR 467 (514)
Q Consensus 461 ~d~~v~i 467 (514)
..+.+++
T Consensus 439 ~k~~~~v 445 (463)
T KOG0270|consen 439 EKAVLRV 445 (463)
T ss_pred ccceEEE
Confidence 7777777
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-19 Score=157.71 Aligned_cols=205 Identities=16% Similarity=0.235 Sum_probs=159.2
Q ss_pred EEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccce
Q 010256 247 TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF 325 (514)
Q Consensus 247 ~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 325 (514)
.|+.+ .||.+.+.+-. ++.. .....|.+.+.+-.|+|+| .-|+++++||.|++|.- +|-+. .+
T Consensus 77 ~~~i~s~DGkf~il~k~-~rVE--------~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSr-sGMLR----St- 140 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKS-ARVE--------RSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSR-SGMLR----ST- 140 (737)
T ss_pred eEEEEcCCceEEEeccc-chhh--------hhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEec-cchHH----HH-
Confidence 44445 89998887754 2222 1457799999999999999 89999999999999984 44331 11
Q ss_pred eccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEE
Q 010256 326 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC 405 (514)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 405 (514)
+.....+|.|++|.|+..-++-+..+.+.|=-+.. ...+-..+.|.+. |.++.
T Consensus 141 -----------l~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~-n~k~i~WkAHDGi---------------iL~~~ 193 (737)
T KOG1524|consen 141 -----------VVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAA-NSKIIRWRAHDGL---------------VLSLS 193 (737)
T ss_pred -----------HhhcCceeEEEEECCCCCceEEecCCeEEEeeccc-ccceeEEeccCcE---------------EEEee
Confidence 11122589999999998888877667788877775 5566678889887 45999
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCccccc
Q 010256 406 LSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDF 485 (514)
Q Consensus 406 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~ 485 (514)
|++..+++++|+.|-+.+|||.. ......-..|..+|++++|.|+ +..+.+|. .+.|+ .++.
T Consensus 194 W~~~s~lI~sgGED~kfKvWD~~--G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~---~~p~----------- 255 (737)
T KOG1524|consen 194 WSTQSNIIASGGEDFRFKIWDAQ--GANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARF---SSPR----------- 255 (737)
T ss_pred cCccccceeecCCceeEEeeccc--CcccccCChhccceeeeeeccc-cceeeeee-eeeee---cCCC-----------
Confidence 99999999999999999999976 3444677789999999999999 66666653 34454 2222
Q ss_pred ccceEEEEEcCCCCEEEEEecCcEEEE
Q 010256 486 SMKLLHLAWHPSENSIACAASNSLYMY 512 (514)
Q Consensus 486 ~~~v~~~~~spd~~~l~~~~~~~~~i~ 512 (514)
.+.|..++|||||+.+++|+..+..++
T Consensus 256 ~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 256 VGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ccceEEEEEcCCCceeeccccCceEEE
Confidence 689999999999999999998887765
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.8e-19 Score=143.17 Aligned_cols=300 Identities=10% Similarity=0.138 Sum_probs=192.4
Q ss_pred ccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccc
Q 010256 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (514)
+|.+.|+|+.|-.++ +|.+|..-|.|.+|.+.+.+.. ..+++|. .
T Consensus 12 p~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~-----------------------~~~r~~g-----------~ 56 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDL-----------------------PLIRLFG-----------R 56 (323)
T ss_pred cccchheehhhccch-hhhcccccceEEEEEeecCccc-----------------------hhhhhhc-----------c
Confidence 789999999999877 4889999999999999887743 2344222 1
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcc-ccc--
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG-ERN-- 189 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l-~~~-- 189 (514)
..|+.+.-.|. ..+.+-+.|..+.+|++..+....+.....+. .+.-..++.+.++.. +..
T Consensus 57 ~~it~lq~~p~---d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~ns-------------lgFCrfSl~~~~k~~eqll~y 120 (323)
T KOG0322|consen 57 LFITNLQSIPN---DSLDTQGRDPLLILWTIAYSAFISIHSIVVNS-------------LGFCRFSLVKKPKNSEQLLEY 120 (323)
T ss_pred ceeeceeecCC---cchhhcCCCceEEEEEccCcceEEEeeeeccc-------------cccccceeccCCCcchhheec
Confidence 55777776442 47889999999999999886654443322111 000011222332221 000
Q ss_pred cCCCCCCcc-cCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC-CC--EEEEe-cCCeEEEEeccCC
Q 010256 190 FGCASNDSS-FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GE--TFISA-DDLRINLWNLEIS 264 (514)
Q Consensus 190 ~~~~~~~~~-~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~--~l~s~-~d~~i~iwd~~~~ 264 (514)
....+.... --++..-.+++-+ . -..+..+.+.+..+..+ +. ++++| ++|.+.+||+.++
T Consensus 121 p~rgsde~h~~D~g~~tqv~i~d----d-----------~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~ 185 (323)
T KOG0322|consen 121 PSRGSDETHKQDGGDTTQVQIAD----D-----------SERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTG 185 (323)
T ss_pred CCcccchhhhhccCccceeEccC----c-----------hhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCC
Confidence 000000000 0011111222211 0 01234466777765332 33 34567 8999999999976
Q ss_pred CceeeeeccCC--CcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecccc
Q 010256 265 NQSFNIVDVKP--ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (514)
Q Consensus 265 ~~~~~~~~~~~--~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (514)
...+.+....+ .....|..+|.++.|.+.- ..=++|+.+..+..|.+.......+ +... +.-...
T Consensus 186 ~~~~~~~~~~kv~~~~ash~qpvlsldyas~~-~rGisgga~dkl~~~Sl~~s~gslq-~~~e-----------~~lknp 252 (323)
T KOG0322|consen 186 DKIIQLPQSSKVESPNASHKQPVLSLDYASSC-DRGISGGADDKLVMYSLNHSTGSLQ-IRKE-----------ITLKNP 252 (323)
T ss_pred ceeeccccccccccchhhccCcceeeeechhh-cCCcCCCccccceeeeeccccCccc-ccce-----------EEecCC
Confidence 44333211111 2345688999999998765 5667788888999998865321111 1111 111114
Q ss_pred ceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCc
Q 010256 343 SISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 421 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 421 (514)
.|..+.+-||++.+|+++ |++||||+.++ ..++..++.|...+ .+++|+|+.+++|+++.|++
T Consensus 253 Gv~gvrIRpD~KIlATAGWD~RiRVyswrt-l~pLAVLkyHsagv---------------n~vAfspd~~lmAaaskD~r 316 (323)
T KOG0322|consen 253 GVSGVRIRPDGKILATAGWDHRIRVYSWRT-LNPLAVLKYHSAGV---------------NAVAFSPDCELMAAASKDAR 316 (323)
T ss_pred CccceEEccCCcEEeecccCCcEEEEEecc-CCchhhhhhhhcce---------------eEEEeCCCCchhhhccCCce
Confidence 688899999999999965 69999999998 99999999998653 39999999999999999999
Q ss_pred EEEEec
Q 010256 422 FRVFGC 427 (514)
Q Consensus 422 i~iwd~ 427 (514)
|.+|++
T Consensus 317 ISLWkL 322 (323)
T KOG0322|consen 317 ISLWKL 322 (323)
T ss_pred EEeeec
Confidence 999986
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-18 Score=165.30 Aligned_cols=310 Identities=15% Similarity=0.224 Sum_probs=205.7
Q ss_pred ceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccccee
Q 010256 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (514)
Q Consensus 37 ~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 116 (514)
.-..+.|+|-...+++++..-.|+|||.+.++.. ..|..+.+ ....|+
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l-----------------------~~F~n~~~---------~~t~Vs 1113 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLL-----------------------NGFDNGAF---------PDTRVS 1113 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCcee-----------------------ccccCCCC---------CCCccc
Confidence 4567899998888999887779999999877642 22332221 126799
Q ss_pred EEEEeeCCCCcEEEEeeCCCeEEEEEcCcc---EEEEEeeccCC-CccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEK---KVKKVFDWNVH-PEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 117 ~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~---~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
.+.+....|..++++|+.||.||||+-... +...+.....- .....+.+.- .-+.|-.....|
T Consensus 1114 ~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~-------~v~dWqQ~~G~L------ 1180 (1387)
T KOG1517|consen 1114 DLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTG-------LVVDWQQQSGHL------ 1180 (1387)
T ss_pred eeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCC-------eeeehhhhCCeE------
Confidence 999988888889999999999999974322 22211111100 0000000000 134555555555
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC-CCCEEEEe-cCCeEEEEeccCCCceeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 270 (514)
+++++...|+||| ... |. .......+....|+++.-+. .|+.+++| .||.|++||.+.......+
T Consensus 1181 ------l~tGd~r~IRIWD-a~~-E~-----~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v 1247 (1387)
T KOG1517|consen 1181 ------LVTGDVRSIRIWD-AHK-EQ-----VVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLV 1247 (1387)
T ss_pred ------EecCCeeEEEEEe-ccc-ce-----eEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccc
Confidence 6777789999999 222 11 11111133445566665443 47999999 9999999999866542111
Q ss_pred eccCCCcccccCCc--eEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEE
Q 010256 271 VDVKPANMEDLTEV--ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (514)
Q Consensus 271 ~~~~~~~~~~~~~~--i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (514)
.....|... |..+.+.+.|-..|++|+.+|.|++||+|.... .. ......+.. ..+..+++.
T Consensus 1248 -----~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-e~-~~~iv~~~~---------yGs~lTal~ 1311 (1387)
T KOG1517|consen 1248 -----CVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-ET-FLTIVAHWE---------YGSALTALT 1311 (1387)
T ss_pred -----eeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-cc-cceeeeccc---------cCccceeee
Confidence 134556666 999999998744699999999999999998521 11 111111110 112589999
Q ss_pred EecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecC
Q 010256 349 FARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 349 ~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 428 (514)
.+++...+|+|+.+.|+||++. ++.+..+..+... ....+..+.+++|+|-.-+||+|+.|..|.||...
T Consensus 1312 VH~hapiiAsGs~q~ikIy~~~--G~~l~~~k~n~~F--------~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1312 VHEHAPIIASGSAQLIKIYSLS--GEQLNIIKYNPGF--------MGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred eccCCCeeeecCcceEEEEecC--hhhhcccccCccc--------ccCcCCCcceeeecchhHhhhhccCCceEEEeecC
Confidence 9999999999988999999997 6666666644332 22344455699999999999999999999999876
Q ss_pred CC
Q 010256 429 EG 430 (514)
Q Consensus 429 ~~ 430 (514)
..
T Consensus 1382 k~ 1383 (1387)
T KOG1517|consen 1382 KP 1383 (1387)
T ss_pred Cc
Confidence 54
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.1e-19 Score=156.78 Aligned_cols=287 Identities=12% Similarity=0.152 Sum_probs=195.8
Q ss_pred cccccchhhccccCcccccccccceEEEEEcCCCCeEEEe--cCCCeEEEEEecCCcccCCcccccccccccccCCccce
Q 010256 14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATG--DRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR 91 (514)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (514)
...|+++..-+...-.+... .-.+.+++|+.... |+++ +.|..+++|.-... . |+..
T Consensus 14 ~kl~D~s~~~~~~~~~~~t~-~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~-~------------------~~Vp 72 (673)
T KOG4378|consen 14 TKLSDFSDLETKSEYVHQTA-EPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGK-T------------------PEVP 72 (673)
T ss_pred eEEeecccccCccccccCCC-CCcceeeeccccce-EEEeecCCceeEEEecccCC-C------------------Cccc
Confidence 45688877533322222221 22499999998664 4444 45678888885432 1 2222
Q ss_pred eeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceeccc
Q 010256 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (514)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (514)
......+.. ...|.++.++ .++++|+..+.|+|||++...+.+....+. ..|.
T Consensus 73 ~~~k~~gd~-----------~~Cv~~~s~S-----~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~--------stvt--- 125 (673)
T KOG4378|consen 73 RVRKLTGDN-----------AFCVACASQS-----LYEISGGQSGCVKIWDLRAKLIHRFLKDHQ--------STVT--- 125 (673)
T ss_pred eeeccccch-----------HHHHhhhhcc-----eeeeccCcCceeeehhhHHHHHhhhccCCc--------ceeE---
Confidence 333333332 1445555552 589999999999999999665544444331 2333
Q ss_pred ccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEE-
Q 010256 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS- 250 (514)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s- 250 (514)
.+.+.....++ ++++..|.|.+.. +.... ....|..+....|+-+.|+|..+.+++
T Consensus 126 ----~v~YN~~Deyi------------Asvs~gGdiiih~-~~t~~------~tt~f~~~sgqsvRll~ys~skr~lL~~ 182 (673)
T KOG4378|consen 126 ----YVDYNNTDEYI------------ASVSDGGDIIIHG-TKTKQ------KTTTFTIDSGQSVRLLRYSPSKRFLLSI 182 (673)
T ss_pred ----EEEecCCccee------------EEeccCCcEEEEe-cccCc------cccceecCCCCeEEEeecccccceeeEe
Confidence 55666666666 8899999998766 22211 112222333456778999998777665
Q ss_pred e-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccC
Q 010256 251 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 329 (514)
Q Consensus 251 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 329 (514)
+ ++|.|.+||+....+.+. -.+.|..+...|+|+|..+.+|++.+.|..|.+||++..+.... +.
T Consensus 183 asd~G~VtlwDv~g~sp~~~-------~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~----l~--- 248 (673)
T KOG4378|consen 183 ASDKGAVTLWDVQGMSPIFH-------ASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDR----LT--- 248 (673)
T ss_pred eccCCeEEEEeccCCCcccc-------hhhhccCCcCcceecCCccceEEEecccceEEEeecccccccce----ee---
Confidence 4 899999999985444432 35679999999999999888999999999999999987654322 11
Q ss_pred CCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcC
Q 010256 330 APGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 408 (514)
Q Consensus 330 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (514)
...+...++|+++|.+|++|.. |.|..||++....++.++..|... |++++|-|
T Consensus 249 ----------y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~s---------------Vt~vafq~ 303 (673)
T KOG4378|consen 249 ----------YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDAS---------------VTRVAFQP 303 (673)
T ss_pred ----------ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccc---------------eeEEEeee
Confidence 1147899999999999999976 999999999877889999888765 44788766
Q ss_pred CC
Q 010256 409 DG 410 (514)
Q Consensus 409 ~~ 410 (514)
..
T Consensus 304 s~ 305 (673)
T KOG4378|consen 304 SP 305 (673)
T ss_pred cc
Confidence 53
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.1e-19 Score=159.43 Aligned_cols=273 Identities=15% Similarity=0.176 Sum_probs=189.5
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
...|.+.|+.++|.|....|++++.||.|.+|+++..... -..+...+.+|.+|.
T Consensus 290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s---------------~~~~~epi~tfraH~---------- 344 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS---------------AEKDVEPILTFRAHE---------- 344 (577)
T ss_pred eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc---------------cccceeeeEEEeccc----------
Confidence 4578999999999999999999999999999999432211 112445677899999
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
++|.|++. ..++..+++|+-||+|+.|++.... . |+...
T Consensus 345 --gPVl~v~v--~~n~~~~ysgg~Dg~I~~w~~p~n~-d-------------------------------p~ds~----- 383 (577)
T KOG0642|consen 345 --GPVLCVVV--PSNGEHCYSGGIDGTIRCWNLPPNQ-D-------------------------------PDDSY----- 383 (577)
T ss_pred --CceEEEEe--cCCceEEEeeccCceeeeeccCCCC-C-------------------------------ccccc-----
Confidence 99999999 6788899999999999999986221 0 00000
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
| .......+.||.+.|+.+++++....|+++ .||++++|+...... .
T Consensus 384 --------------------d----------p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~--~ 431 (577)
T KOG0642|consen 384 --------------------D----------PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP--C 431 (577)
T ss_pred --------------------C----------cchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc--c
Confidence 0 000111247999999999999999999999 999999999874433 1
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
++ .-....+...++++-.......++...-+.-.++++..... .+.++....+.++. ...+..+.+
T Consensus 432 ~f-----~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~----~~~~~s~~~~~~~~-----~~~in~vVs 497 (577)
T KOG0642|consen 432 TF-----GEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSD----LLIFESSASPGPRR-----YPQINKVVS 497 (577)
T ss_pred cc-----CCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhh----eeeccccCCCcccc-----cCccceEEe
Confidence 11 11112334456666544312222222223333334433322 33343333222211 135778889
Q ss_pred ecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecC
Q 010256 350 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 350 s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 428 (514)
+|.+.+.+++. ++.|+++|..+ ++++.....|.... +++++.|+|-+|++++.||++++|.+.
T Consensus 498 ~~~~~~~~~~hed~~Ir~~dn~~-~~~l~s~~a~~~sv---------------tslai~~ng~~l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 498 HPTADITFTAHEDRSIRFFDNKT-GKILHSMVAHKDSV---------------TSLAIDPNGPYLMSGSHDGSVRLWKLD 561 (577)
T ss_pred cCCCCeeEecccCCceecccccc-cccchheeecccee---------------cceeecCCCceEEeecCCceeehhhcc
Confidence 99998888875 49999999998 99999988887653 499999999999999999999999987
Q ss_pred CCc
Q 010256 429 EGS 431 (514)
Q Consensus 429 ~~~ 431 (514)
...
T Consensus 562 ~k~ 564 (577)
T KOG0642|consen 562 VKT 564 (577)
T ss_pred chh
Confidence 543
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.2e-18 Score=140.29 Aligned_cols=229 Identities=17% Similarity=0.224 Sum_probs=165.2
Q ss_pred cEEeceeeccccc--cccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCC
Q 010256 206 SLRLPVVVTSQET--NLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTE 283 (514)
Q Consensus 206 ~i~i~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 283 (514)
...||.+....+. ..+.++...+-..+-+.|.|+.|.|++..+++-.|..|.+|+++........+.. ..-.++..
T Consensus 94 ~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~s--s~s~e~~~ 171 (370)
T KOG1007|consen 94 GAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLS--SESAEMRH 171 (370)
T ss_pred eEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecc--cccccccc
Confidence 4567773322222 1122333333345667999999999999999889999999999866553222111 11223567
Q ss_pred ceEEEEEecC-CCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEE-EEeC
Q 010256 284 VITSAEFHPT-HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL-SRDY 361 (514)
Q Consensus 284 ~i~~v~~~p~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~-~~~~ 361 (514)
..++-+|+|. .++.++ ...|+++..||+|+.... ..+ -..|...+..+.|+|+.++++ +++|
T Consensus 172 ~ftsg~WspHHdgnqv~-tt~d~tl~~~D~RT~~~~----~sI-----------~dAHgq~vrdlDfNpnkq~~lvt~gD 235 (370)
T KOG1007|consen 172 SFTSGAWSPHHDGNQVA-TTSDSTLQFWDLRTMKKN----NSI-----------EDAHGQRVRDLDFNPNKQHILVTCGD 235 (370)
T ss_pred eecccccCCCCccceEE-EeCCCcEEEEEccchhhh----cch-----------hhhhcceeeeccCCCCceEEEEEcCC
Confidence 7889999993 225555 456899999999986542 111 244667899999999877654 5555
Q ss_pred -CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCC-CEEEEEeCCCcEEEEecCCCc--------
Q 010256 362 -MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCSEGS-------- 431 (514)
Q Consensus 362 -~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~-------- 431 (514)
|.|+|||.+....++.++.+|.+. |+++.|+|.- ++|.+|+.|..|.+|...+-.
T Consensus 236 dgyvriWD~R~tk~pv~el~~HsHW---------------vW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~ 300 (370)
T KOG1007|consen 236 DGYVRIWDTRKTKFPVQELPGHSHW---------------VWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFE 300 (370)
T ss_pred CccEEEEeccCCCccccccCCCceE---------------EEEEEecCccceEEEecCCCceeEEEeccccccccccccc
Confidence 999999999888899999999987 6699999964 577799999999999864321
Q ss_pred ----------------e----eeeeecCCCcceeEEEECCCCCc-eeecCCCCeEEE
Q 010256 432 ----------------A----ESTTLEASKNPMRRQVQTPSRPS-RPLGSLSGVVRR 467 (514)
Q Consensus 432 ----------------~----~~~~~~~~~~~v~~~~~~~~~~~-l~s~s~d~~v~i 467 (514)
. .+.++..|.+.|++++|+...++ +|+-|-||.+.|
T Consensus 301 ~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 301 DDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred cccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence 0 12366689999999999988776 578899998888
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-15 Score=148.00 Aligned_cols=367 Identities=21% Similarity=0.336 Sum_probs=246.8
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
...|...|.++.|.+.+..++.++.|+.+.+|+...... ....+.++..
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----------------------~~~~~~~~~~--------- 109 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEK----------------------LIKSLEGLHD--------- 109 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCce----------------------eEEEEeccCC---------
Confidence 458899999999999999999999999999999875541 2233444220
Q ss_pred cccceeEEEEeeCCCCc-EEEEeeC-CCeEEEEEcCc-cEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccc
Q 010256 111 IEEKINKIRWCQSANSA-LYLLSTN-DKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~-~l~s~~~-d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 187 (514)
..+..+.+. .+++. +++..+. |+.+++|++.. .........+ ...+. .+.++|+++.+
T Consensus 110 --~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--------~~~v~-------~~~~~~~~~~~- 170 (466)
T COG2319 110 --SSVSKLALS-SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGH--------SESVT-------SLAFSPDGKLL- 170 (466)
T ss_pred --CceeeEEEE-CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecC--------cccEE-------EEEECCCCCEE-
Confidence 246777775 55555 4454444 99999999997 5444444443 12333 68899999866
Q ss_pred cccCCCCCCcccCCCC-CCcEEeceeeccccccccccccccccccCccCeEEEEECCCCC-EEEEe-cCCeEEEEeccCC
Q 010256 188 RNFGCASNDSSFPPGG-VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEIS 264 (514)
Q Consensus 188 ~~~~~~~~~~~~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~ 264 (514)
+.++. ++.+++|+ ... ...... +.+|...|.+++|+|++. .++++ .|+.|++||....
T Consensus 171 -----------~~~~~~~~~~~~~~-~~~------~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~ 231 (466)
T COG2319 171 -----------ASGSSLDGTIKLWD-LRT------GKPLST-LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG 231 (466)
T ss_pred -----------EecCCCCCceEEEE-cCC------CceEEe-eccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC
Confidence 77765 99999999 322 111222 256899999999999998 66664 8999999987733
Q ss_pred CceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccce
Q 010256 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (514)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 344 (514)
..... .+..|.... ...|+|++ .++++++.|+.+++|+++..... ... +.+|...+
T Consensus 232 ~~~~~-------~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~---~~~------------~~~~~~~v 287 (466)
T COG2319 232 KLLRS-------TLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSL---LRT------------LSGHSSSV 287 (466)
T ss_pred cEEee-------ecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcE---EEE------------EecCCccE
Confidence 32221 245566554 33899998 78899999999999999875531 111 13345789
Q ss_pred eEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeee--eccccccccccccccCCccceeeEEEcCCCCEEEEE-eCCC
Q 010256 345 SDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQ--VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-SYSN 420 (514)
Q Consensus 345 ~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg 420 (514)
.++.|+|++..+++++ ++.+.+||... ........ .|... +..+.|.+++..++.+ ..|+
T Consensus 288 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~d~ 351 (466)
T COG2319 288 LSVAFSPDGKLLASGSSDGTVRLWDLET-GKLLSSLTLKGHEGP---------------VSSLSFSPDGSLLVSGGSDDG 351 (466)
T ss_pred EEEEECCCCCEEEEeeCCCcEEEEEcCC-CceEEEeeecccCCc---------------eEEEEECCCCCEEEEeecCCC
Confidence 9999999888888864 47899998876 44444443 33321 2367774343556555 6889
Q ss_pred cEEEEecCCCceeeeeecCCCcceeEEEECCCCCceee-cCCCCeEEEeeCCCCCccccCCcccccc-cceEEEEEcCCC
Q 010256 421 LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPL-GSLSGVVRRVKGADNSALDANGNAFDFS-MKLLHLAWHPSE 498 (514)
Q Consensus 421 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~s~d~~v~i~~~~~~~~~~~~~~~~~~~-~~v~~~~~spd~ 498 (514)
.+.+|+..... ......... .+..+.+.+ ...... +..++.+.+.+..... ... ..... ..+....+++++
T Consensus 352 ~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~ 424 (466)
T COG2319 352 TIRLWDLRTGK-PLKTLEGHS-NVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGS---LLR-NLDGHTSRVTSLDFSPDG 424 (466)
T ss_pred cEEeeecCCCc-eeEEecCCc-eEEEEEECC-CCCEEEEecCCCceEEEecccCe---eee-eccCCCCcEEEEEECCCC
Confidence 99999998765 222222222 277888888 544444 6888888883222211 111 11112 788999999999
Q ss_pred CEEEEEe-cCcEEEEe
Q 010256 499 NSIACAA-SNSLYMYY 513 (514)
Q Consensus 499 ~~l~~~~-~~~~~i~~ 513 (514)
..++.++ +..+.+|.
T Consensus 425 ~~~~~~~~~~~~~~~~ 440 (466)
T COG2319 425 KSLASGSSDNTIRLWD 440 (466)
T ss_pred cEEEEecCCCcEEEEe
Confidence 9998744 66666664
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-19 Score=167.70 Aligned_cols=276 Identities=14% Similarity=0.197 Sum_probs=207.8
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|.|+.|...|.++++|+.|..++||..+++. .+....||.
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~-----------------------~lAs~rGhs---------- 232 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR-----------------------CLASCRGHS---------- 232 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchh-----------------------hhccCCCCc----------
Confidence 45899999999999999999999999999999988776 457789998
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
+.|+.++. +.+..++++++.|..|++|.+..+..+.
T Consensus 233 --~ditdlav--s~~n~~iaaaS~D~vIrvWrl~~~~pvs---------------------------------------- 268 (1113)
T KOG0644|consen 233 --GDITDLAV--SSNNTMIAAASNDKVIRVWRLPDGAPVS---------------------------------------- 268 (1113)
T ss_pred --cccchhcc--chhhhhhhhcccCceEEEEecCCCchHH----------------------------------------
Confidence 88999998 5566788899999999999998765211
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~ 270 (514)
.+.+|++.|++++|+|-. .+++||++++||.+ -. ..+
T Consensus 269 -------------------------------------vLrghtgavtaiafsP~~---sss~dgt~~~wd~r-~~--~~~ 305 (1113)
T KOG0644|consen 269 -------------------------------------VLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDAR-LE--PRI 305 (1113)
T ss_pred -------------------------------------HHhccccceeeeccCccc---cCCCCCceEecccc-cc--ccc
Confidence 147999999999999976 44499999999987 11 111
Q ss_pred eccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEe
Q 010256 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (514)
Q Consensus 271 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 350 (514)
....|..+. ....+-++.|-..+ ..+++++.|+.-..|.+..-.. +...+.-+.++
T Consensus 306 y~prp~~~~-~~~~~~s~~~~~~~-~~f~Tgs~d~ea~n~e~~~l~~----------------------~~~~lif~t~s 361 (1113)
T KOG0644|consen 306 YVPRPLKFT-EKDLVDSILFENNG-DRFLTGSRDGEARNHEFEQLAW----------------------RSNLLIFVTRS 361 (1113)
T ss_pred cCCCCCCcc-cccceeeeeccccc-cccccccCCcccccchhhHhhh----------------------hccceEEEecc
Confidence 112222332 23567778888887 7899999999988887754221 00112222222
Q ss_pred cCC-CEEEEE-eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCC-EEEEEeCCCcEEEEec
Q 010256 351 RNG-RHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYSNLFRVFGC 427 (514)
Q Consensus 351 ~~g-~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~ 427 (514)
.+- .+.+++ .+..+++|++.. +..++.+.+|.... +.+.++|-.. ...+++.||...|||+
T Consensus 362 sd~~~~~~~ar~~~~~~vwnl~~-g~l~H~l~ghsd~~---------------yvLd~Hpfn~ri~msag~dgst~iwdi 425 (1113)
T KOG0644|consen 362 SDLSSIVVTARNDHRLCVWNLYT-GQLLHNLMGHSDEV---------------YVLDVHPFNPRIAMSAGYDGSTIIWDI 425 (1113)
T ss_pred ccccccceeeeeeeEeeeeeccc-chhhhhhcccccce---------------eeeeecCCCcHhhhhccCCCceEeeec
Confidence 222 344444 558899999997 88888888888763 3788998554 4558999999999999
Q ss_pred CCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 428 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
-.+.+......+| ..+..-.|+++|..++....-|.+.|
T Consensus 426 ~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i 464 (1113)
T KOG0644|consen 426 WEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYI 464 (1113)
T ss_pred ccCCcceeeeccc-ceeeccccCCCCceEecCCCCCceEE
Confidence 9887766666665 44557789999999988888888888
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6e-18 Score=144.49 Aligned_cols=299 Identities=15% Similarity=0.126 Sum_probs=201.8
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
+.|+++.| +.++++|++|+.|..+++|++..--..++
T Consensus 57 GCiNAlqF--S~N~~~L~SGGDD~~~~~W~~de~~~~k~----------------------------------------- 93 (609)
T KOG4227|consen 57 GCINALQF--SHNDRFLASGGDDMHGRVWNVDELMVRKT----------------------------------------- 93 (609)
T ss_pred cccceeee--ccCCeEEeecCCcceeeeechHHHHhhcC-----------------------------------------
Confidence 99999999 56789999999999999999875321111
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
.++....-..|...|.|++|+..+..+.+| .+++|.+.|+++.+.....
T Consensus 94 -----------------------------~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~- 143 (609)
T KOG4227|consen 94 -----------------------------PKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVA- 143 (609)
T ss_pred -----------------------------CCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeee-
Confidence 001111125677899999999999999999 9999999999976654321
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
.-....+.|+.+..+|.. +.|++.+.++.|.+||.+...... ..+-. .........+.|+|
T Consensus 144 -----~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~---~~~~~----------AN~~~~F~t~~F~P 204 (609)
T KOG4227|consen 144 -----NENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPI---SLVLP----------ANSGKNFYTAEFHP 204 (609)
T ss_pred -----cccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCC---ceeee----------cCCCccceeeeecC
Confidence 223345689999999997 899999999999999998765221 11111 11124577889999
Q ss_pred CCC-EEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCC
Q 010256 352 NGR-HILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 352 ~g~-~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 429 (514)
... +|++.+. +.+.+||.+.+..++....+........ ..-+++.|+|+|+.+++--....-.+||+.+
T Consensus 205 ~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~---------~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S 275 (609)
T KOG4227|consen 205 ETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQEN---------TEWMGSLWSPSGNQFMSIRRGKCPLYFDFIS 275 (609)
T ss_pred CCceeEEeccccCCCCceeeccccchHHhhhccccCcccc---------hhhhheeeCCCCCeehhhhccCCCEEeeeec
Confidence 654 5556655 8899999997666655444333221100 0112788999999988776655666788876
Q ss_pred CceeeeeecCC------CcceeEEEECCCCCceeecCCCCeEEEee-------------CCCCC--ccc--cCCc---cc
Q 010256 430 GSAESTTLEAS------KNPMRRQVQTPSRPSRPLGSLSGVVRRVK-------------GADNS--ALD--ANGN---AF 483 (514)
Q Consensus 430 ~~~~~~~~~~~------~~~v~~~~~~~~~~~l~s~s~d~~v~i~~-------------~~~~~--~~~--~~~~---~~ 483 (514)
..+........ ...+.+++|.-+.. +++||.+-.+.+++ |.... ..+ +.+. +.
T Consensus 276 ~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLr 354 (609)
T KOG4227|consen 276 QRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLR 354 (609)
T ss_pred ccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEe
Confidence 54433332211 12356777766644 99999998888811 11000 000 1111 22
Q ss_pred ccccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 484 DFSMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 484 ~~~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
+|.+-++.+.|+|-.++|++.+ .+.+.||+
T Consensus 355 GHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 355 GHRSVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred cccccccceeecCCcceEeccchhhheeccc
Confidence 6888999999999999888555 88888886
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.7e-17 Score=146.19 Aligned_cols=209 Identities=13% Similarity=0.166 Sum_probs=150.6
Q ss_pred cEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCc
Q 010256 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS 206 (514)
Q Consensus 127 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 206 (514)
..|+.++.||.+.+.+-.. +.......+ .+.+. +-.|+|||..+ ++.++||.
T Consensus 76 d~~~i~s~DGkf~il~k~~-rVE~sv~AH--------~~A~~-------~gRW~~dGtgL------------lt~GEDG~ 127 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSA-RVERSISAH--------AAAIS-------SGRWSPDGAGL------------LTAGEDGV 127 (737)
T ss_pred ceEEEEcCCceEEEecccc-hhhhhhhhh--------hhhhh-------hcccCCCCcee------------eeecCCce
Confidence 4688889999998876432 222222222 22222 56899999999 99999999
Q ss_pred EEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceE
Q 010256 207 LRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT 286 (514)
Q Consensus 207 i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 286 (514)
|++|. ...+ .+..+.....+|+|++|.|+.+.++-+..+.+.+=-+......+ ....|.+-|.
T Consensus 128 iKiWS----rsGM-----LRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i--------~WkAHDGiiL 190 (737)
T KOG1524|consen 128 IKIWS----RSGM-----LRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKII--------RWRAHDGLVL 190 (737)
T ss_pred EEEEe----ccch-----HHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeeccccccee--------EEeccCcEEE
Confidence 99998 2221 12222445578999999999999888877777776666444333 4678999999
Q ss_pred EEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEE
Q 010256 287 SAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKL 366 (514)
Q Consensus 287 ~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~i 366 (514)
++.|+|.. +++++|++|-..++||-....+. . -..|..+|++++|.|+ +.++.++..++++
T Consensus 191 ~~~W~~~s-~lI~sgGED~kfKvWD~~G~~Lf-----~------------S~~~ey~ITSva~npd-~~~~v~S~nt~R~ 251 (737)
T KOG1524|consen 191 SLSWSTQS-NIIASGGEDFRFKIWDAQGANLF-----T------------SAAEEYAITSVAFNPE-KDYLLWSYNTARF 251 (737)
T ss_pred EeecCccc-cceeecCCceeEEeecccCcccc-----c------------CChhccceeeeeeccc-cceeeeeeeeeee
Confidence 99999998 89999999999999997543321 1 1235578999999999 7777777766662
Q ss_pred EEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEe
Q 010256 367 WDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (514)
Q Consensus 367 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 426 (514)
=..+. ..|+.++||+||..++.|...|.+.+=.
T Consensus 252 ~~p~~---------------------------GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 252 SSPRV---------------------------GSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred cCCCc---------------------------cceEEEEEcCCCceeeccccCceEEEee
Confidence 11111 1245899999999999999888875533
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-17 Score=137.96 Aligned_cols=355 Identities=15% Similarity=0.157 Sum_probs=211.6
Q ss_pred EEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEE
Q 010256 40 AIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (514)
Q Consensus 40 ~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~ 119 (514)
-.+|||+|+++|+.+.- ++.|-|..+-+.. ..+.. -+.|..|.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~-----------------------qlf~c-------------ldki~yie 55 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLH-----------------------QLFLC-------------LDKIVYIE 55 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHH-----------------------HHHHH-------------HHHhhhee
Confidence 46899999999998755 7888887654421 10110 15688899
Q ss_pred EeeCCCCcEEEE-eeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcc
Q 010256 120 WCQSANSALYLL-STNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS 198 (514)
Q Consensus 120 ~~~~~~~~~l~s-~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 198 (514)
| ..+..+++. +..|+.|.+|++...+....+... .+..+.+.|+|||+.+ +
T Consensus 56 W--~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg---------------~agls~~~WSPdgrhi-----------L 107 (447)
T KOG4497|consen 56 W--KADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG---------------QAGLSSISWSPDGRHI-----------L 107 (447)
T ss_pred e--eccceeeeeeeeccceEEEEEeecceeEEEeccC---------------CCcceeeeECCCcceE-----------e
Confidence 9 456556665 478889999999988765544433 1222378999999765 2
Q ss_pred cCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCC
Q 010256 199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPA 276 (514)
Q Consensus 199 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~ 276 (514)
.+...+-.|.+|. +-+.... ++.-.+..+..++|+|||++.+.+ .|.. ....+.. .+...+ + .
T Consensus 108 ~tseF~lriTVWS-L~t~~~~--------~~~~pK~~~kg~~f~~dg~f~ai~sRrDCk-dyv~i~~-c~~W~l--l--~ 172 (447)
T KOG4497|consen 108 LTSEFDLRITVWS-LNTQKGY--------LLPHPKTNVKGYAFHPDGQFCAILSRRDCK-DYVQISS-CKAWIL--L--K 172 (447)
T ss_pred eeecceeEEEEEE-eccceeE--------EecccccCceeEEECCCCceeeeeecccHH-HHHHHHh-hHHHHH--H--H
Confidence 6677788899998 3332221 112233456889999999998876 3321 0011110 000000 0 0
Q ss_pred cccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEE
Q 010256 277 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI 356 (514)
Q Consensus 277 ~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 356 (514)
.+.-..-..+.+.|+||| +.|++ ||---... +..++.. -.+..++|+|.+++|
T Consensus 173 ~f~~dT~DltgieWsPdg-~~laV---------wd~~Leyk----v~aYe~~-------------lG~k~v~wsP~~qfl 225 (447)
T KOG4497|consen 173 EFKLDTIDLTGIEWSPDG-NWLAV---------WDNVLEYK----VYAYERG-------------LGLKFVEWSPCNQFL 225 (447)
T ss_pred hcCCCcccccCceECCCC-cEEEE---------ecchhhhe----eeeeeec-------------cceeEEEeccccceE
Confidence 122234446788999998 66664 43211110 1111111 257889999999999
Q ss_pred EEEeC-CeEEEEEccCCCCcee-----------------------------e-------eeecccccc----cc------
Q 010256 357 LSRDY-MTLKLWDINMDSGPVA-----------------------------T-------FQVHEHLRP----KL------ 389 (514)
Q Consensus 357 ~~~~~-~~i~iwd~~~~~~~~~-----------------------------~-------~~~~~~~~~----~~------ 389 (514)
+.|+. +++||.+--+ -++.. . +..|..... ..
T Consensus 226 avGsyD~~lrvlnh~t-Wk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~ 304 (447)
T KOG4497|consen 226 AVGSYDQMLRVLNHFT-WKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVK 304 (447)
T ss_pred Eeeccchhhhhhceee-eeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhccee
Confidence 99865 8888755321 00000 0 000000000 00
Q ss_pred -------ccccccCCccceeeEEEcCCCCEEEEEeCC--CcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecC
Q 010256 390 -------CDLYENDSIFDKFECCLSGDGGRVATGSYS--NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGS 460 (514)
Q Consensus 390 -------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s 460 (514)
.+.. +..-++-.++|++|..|++|-.+. +.+.+||++.. ....+-....+|++..|.|...-|+.+.
T Consensus 305 ~~~lkp~tD~p--nPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l--~l~avLiQk~piraf~WdP~~prL~vct 380 (447)
T KOG4497|consen 305 VHKLKPPTDFP--NPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL--KLHAVLIQKHPIRAFEWDPGRPRLVVCT 380 (447)
T ss_pred eecccCCCCCC--CcccccceeeecCCceEEeeecCCCCceEEEEechhh--hhhhhhhhccceeEEEeCCCCceEEEEc
Confidence 0000 001134468999999999986543 67999999854 2334445667999999999999888887
Q ss_pred CCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecCcEE
Q 010256 461 LSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLY 510 (514)
Q Consensus 461 ~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~ 510 (514)
....+++ |.+.. .+........-.|..+.|+-+|..|+..+.|...
T Consensus 381 g~srLY~---W~psg-~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDafc 426 (447)
T KOG4497|consen 381 GKSRLYF---WAPSG-PRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAFC 426 (447)
T ss_pred CCceEEE---EcCCC-ceEEecCCCCceeeeEEecCCCcEEEEEcCCceE
Confidence 6666666 22221 1111111234688999999999999988877543
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-17 Score=155.24 Aligned_cols=287 Identities=14% Similarity=0.195 Sum_probs=186.3
Q ss_pred ccccccchhhccccCcccccccccceEEEEEcC-CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccce
Q 010256 13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR 91 (514)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (514)
....|.+... .. +.....-...|+|++|+| +..+||.|..+|.|.+||+..+... |...
T Consensus 223 ~~~vW~~~~p-~~--Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~-----------------~~s~ 282 (555)
T KOG1587|consen 223 VLLVWSLKNP-NT--PELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDT-----------------PPSG 282 (555)
T ss_pred eEEEEecCCC-CC--ceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCC-----------------CCcc
Confidence 5667888775 21 212334568999999999 6788999999999999999866642 0000
Q ss_pred eeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEE-EEEeeccCCCccccCCcceecc
Q 010256 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV-KKVFDWNVHPEKAAGNGPIFGS 170 (514)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~ 170 (514)
.-.....|. +.|+.+.|..+..+.-+++++.||.|..|+++.-.. ........... .+.-...
T Consensus 283 ls~~~~sh~------------~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~----~~~~~~~ 346 (555)
T KOG1587|consen 283 LSALEVSHS------------EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKH----KGQQSSK 346 (555)
T ss_pred cccccccCC------------cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccc----ccccccc
Confidence 112233455 889999998876666799999999999998765322 11100000000 0000011
Q ss_pred cccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccc--cccccccccccCccCeEEEEECCCCCEE
Q 010256 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNL--VAGCRRIYAHAHDYHINSISNNSDGETF 248 (514)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~l 248 (514)
......+.|.+..... ++.|++.|.|.--. -....... ..+.... ...|.++|+++.++|-+..+
T Consensus 347 ~~~~t~~~F~~~~p~~-----------FiVGTe~G~v~~~~-r~g~~~~~~~~~~~~~~-~~~h~g~v~~v~~nPF~~k~ 413 (555)
T KOG1587|consen 347 AVGATSLKFEPTDPNH-----------FIVGTEEGKVYKGC-RKGYTPAPEVSYKGHST-FITHIGPVYAVSRNPFYPKN 413 (555)
T ss_pred ccceeeEeeccCCCce-----------EEEEcCCcEEEEEe-ccCCccccccccccccc-ccccCcceEeeecCCCccce
Confidence 1122255565544322 37888888886422 11111111 0111222 26789999999999987665
Q ss_pred EEe-cCCeEEEEecc-CCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccccccee
Q 010256 249 ISA-DDLRINLWNLE-ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 326 (514)
Q Consensus 249 ~s~-~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 326 (514)
+.. .|.+++||... ...... .+..+...+++++|||..+..|+++..||.+.+||+...... ++....
T Consensus 414 fls~gDW~vriWs~~~~~~Pl~--------~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~--Pv~s~~ 483 (555)
T KOG1587|consen 414 FLSVGDWTVRIWSEDVIASPLL--------SLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEE--PVLSQK 483 (555)
T ss_pred eeeeccceeEeccccCCCCcch--------hhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccC--Cccccc
Confidence 554 89999999977 333322 345566779999999999899999999999999999765421 111111
Q ss_pred ccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEcc
Q 010256 327 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDIN 370 (514)
Q Consensus 327 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~ 370 (514)
-+....+.+.|+++|+.|+.|++ |++.+|++.
T Consensus 484 ------------~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 484 ------------VCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred ------------ccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 11246778889999999999988 999999996
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.9e-18 Score=152.49 Aligned_cols=258 Identities=19% Similarity=0.211 Sum_probs=175.1
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
+.|..+.|.|+.. .|++++.||+|++|+++... .
T Consensus 295 d~ir~l~~~~sep--~lit~sed~~lk~WnLqk~~--~------------------------------------------ 328 (577)
T KOG0642|consen 295 DCIRALAFHPSEP--VLITASEDGTLKLWNLQKAK--K------------------------------------------ 328 (577)
T ss_pred hhhhhhhcCCCCC--eEEEeccccchhhhhhcccC--C------------------------------------------
Confidence 8899999976554 89999999999999994310 0
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
........+ .+ +.+|.++|.|+++.+.++.+.+| -||+|+.|++..........
T Consensus 329 --------s~~~~~epi----------------~t-fraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~ 383 (577)
T KOG0642|consen 329 --------SAEKDVEPI----------------LT-FRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSY 383 (577)
T ss_pred --------ccccceeee----------------EE-EecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCccccc
Confidence 000001122 22 38999999999999999999999 99999999776332222111
Q ss_pred cc--CCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 272 DV--KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 272 ~~--~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
+. -...+.+|.+.++.+++++.. ..|++++.||++++|+...... .+|...... +.-.++++
T Consensus 384 dp~vl~~~l~Ghtdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~-----~~f~~~~e~----------g~Plsvd~ 447 (577)
T KOG0642|consen 384 DPSVLSGTLLGHTDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTEESP-----CTFGEPKEH----------GYPLSVDR 447 (577)
T ss_pred Ccchhccceeccccceeeeeecccc-cceeeecCCceEEeeccCCcCc-----cccCCcccc----------CCcceEee
Confidence 10 013578999999999999987 7899999999999999876553 222222211 22344554
Q ss_pred ecCCC-EEEE-EeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEec
Q 010256 350 ARNGR-HILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (514)
Q Consensus 350 s~~g~-~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 427 (514)
-.... ..++ ..-+.-.++++.. ...+..+....... .. ... .+..+.++|.+.+.+++..|+.|+++|.
T Consensus 448 ~ss~~a~~~~s~~~~~~~~~~~ev-~s~~~~~~s~~~~~--~~---~~~---~in~vVs~~~~~~~~~~hed~~Ir~~dn 518 (577)
T KOG0642|consen 448 TSSRPAHSLASFRFGYTSIDDMEV-VSDLLIFESSASPG--PR---RYP---QINKVVSHPTADITFTAHEDRSIRFFDN 518 (577)
T ss_pred ccchhHhhhhhcccccccchhhhh-hhheeeccccCCCc--cc---ccC---ccceEEecCCCCeeEecccCCceecccc
Confidence 43221 1111 1123334444443 33333332221110 00 001 1236888999999999999999999999
Q ss_pred CCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 428 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.++ .+......|...++++++.|+|.+|++++.||.+++
T Consensus 519 ~~~-~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l 557 (577)
T KOG0642|consen 519 KTG-KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRL 557 (577)
T ss_pred ccc-ccchheeeccceecceeecCCCceEEeecCCceeeh
Confidence 988 455788899999999999999999999999999999
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.1e-18 Score=149.59 Aligned_cols=304 Identities=15% Similarity=0.188 Sum_probs=216.8
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
.-+|.+.|+.|.|+..|..|++|+.|..|.+||+..+... +.-..||.
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~----------------------l~f~SGH~---------- 185 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK----------------------LSFESGHC---------- 185 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCcc----------------------cccccccc----------
Confidence 3489999999999999999999999999999999876632 22245676
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|..-.|.|..+...+++++.||.+++=.+....
T Consensus 186 --~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~------------------------------------------- 220 (559)
T KOG1334|consen 186 --NNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETG------------------------------------------- 220 (559)
T ss_pred --cchhhhhccCCCCCcCceeccccCceeeeeecccc-------------------------------------------
Confidence 77888889998888899999999999886543211
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCC-CEEEEe-cCCeEEEEeccCCCcee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSF 268 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~ 268 (514)
.-.++.+ +..|.++|..++.-|+. ..|.++ .|+.+.-+|+++....-
T Consensus 221 -----------~~e~t~r--------------------l~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~ 269 (559)
T KOG1334|consen 221 -----------YVENTKR--------------------LAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAE 269 (559)
T ss_pred -----------ceeccee--------------------cccccCccceeeecCCCCCcccccccccceeeeeeccCCccc
Confidence 1111111 35788999999999974 446666 99999999998665443
Q ss_pred eeeccCCCcccccC---CceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccc--ccccceeccCCCCccceeeccccc
Q 010256 269 NIVDVKPANMEDLT---EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD--THSKLFEEQEAPGTRSFFTEIIAS 343 (514)
Q Consensus 269 ~~~~~~~~~~~~~~---~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 343 (514)
.+. .-..+. -....++.+|...+.+++|+.|..+++||.+.-.... ..+..|-.+.. .....-.
T Consensus 270 ~~~-----cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl------~~d~~v~ 338 (559)
T KOG1334|consen 270 KFV-----CREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHL------VEDDPVN 338 (559)
T ss_pred eee-----eeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccc------cccCccc
Confidence 221 111122 2567899999887799999999999999988643210 00112211111 1112246
Q ss_pred eeEEEEecCC-CEEEEEeCCeEEEEEccCC-C----------Ccee-eeeeccccccccccccccCCccceeeE-EEcCC
Q 010256 344 ISDIKFARNG-RHILSRDYMTLKLWDINMD-S----------GPVA-TFQVHEHLRPKLCDLYENDSIFDKFEC-CLSGD 409 (514)
Q Consensus 344 i~~~~~s~~g-~~l~~~~~~~i~iwd~~~~-~----------~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~ 409 (514)
|++++|+.++ .+|++-.|-.|+++.-... + ..++ .+++|..... |-.+ -|-|.
T Consensus 339 ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~T-------------VKgVNFfGPr 405 (559)
T KOG1334|consen 339 ITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRT-------------VKGVNFFGPR 405 (559)
T ss_pred ceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccc-------------cceeeeccCc
Confidence 9999999654 5666667778899864431 1 1112 2455543321 2233 36789
Q ss_pred CCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 410 GGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 410 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.+|+++|++=|.|.||+-+++ .++..+++...-|+++..+|--++||+++-|.-|+|
T Consensus 406 sEyVvSGSDCGhIFiW~K~t~-eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKI 462 (559)
T KOG1334|consen 406 SEYVVSGSDCGHIFIWDKKTG-EIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKI 462 (559)
T ss_pred cceEEecCccceEEEEecchh-HHHHHhhcccceEeccCCCCCCchhhccCCccceee
Confidence 999999999999999999887 455778887779999999999999999999999999
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.6e-15 Score=138.46 Aligned_cols=206 Identities=16% Similarity=0.153 Sum_probs=127.8
Q ss_pred eEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcC
Q 010256 236 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (514)
Q Consensus 236 v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~ 313 (514)
...++++|++++|+++ .++.|.+|++++.+....... .+. +......++++|++..++++...++.|.+||+.
T Consensus 82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~----~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~ 156 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQ----IIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLS 156 (330)
T ss_pred ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCcee----ecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEEC
Confidence 4579999999988887 589999999974432211110 111 223467788999994344555567999999997
Q ss_pred CCcccccc-ccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe--CCeEEEEEccCC-CC--ceeeeeecccccc
Q 010256 314 QSALCDTH-SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMD-SG--PVATFQVHEHLRP 387 (514)
Q Consensus 314 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~~~i~iwd~~~~-~~--~~~~~~~~~~~~~ 387 (514)
+...+... ........ ......++|+|+|+++++.+ +++|.+|+++.. ++ .+..+........
T Consensus 157 ~~g~l~~~~~~~~~~~~-----------g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~ 225 (330)
T PRK11028 157 DDGHLVAQEPAEVTTVE-----------GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFS 225 (330)
T ss_pred CCCcccccCCCceecCC-----------CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCC
Confidence 63322100 00011000 12456799999999998864 499999999742 22 1222221110000
Q ss_pred ccccccccCCccceeeEEEcCCCCEEEEEe-CCCcEEEEecCCCceeeeeecCCC---cceeEEEECCCCCceeecCC-C
Q 010256 388 KLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAESTTLEASK---NPMRRQVQTPSRPSRPLGSL-S 462 (514)
Q Consensus 388 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~s~-d 462 (514)
... . ...+.++|+|++|+++. .++.|.+|++...... .++.++. ...+.+.++|++++|+++.. +
T Consensus 226 -------~~~-~-~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~-~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~ 295 (330)
T PRK11028 226 -------DTR-W-AADIHITPDGRHLYACDRTASLISVFSVSEDGSV-LSFEGHQPTETQPRGFNIDHSGKYLIAAGQKS 295 (330)
T ss_pred -------CCc-c-ceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe-EEEeEEEeccccCCceEECCCCCEEEEEEccC
Confidence 000 0 11588999999998875 4789999999654321 1222221 24568899999999987764 8
Q ss_pred CeEEE
Q 010256 463 GVVRR 467 (514)
Q Consensus 463 ~~v~i 467 (514)
++|.+
T Consensus 296 ~~v~v 300 (330)
T PRK11028 296 HHISV 300 (330)
T ss_pred CcEEE
Confidence 88888
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-17 Score=134.13 Aligned_cols=291 Identities=11% Similarity=0.086 Sum_probs=179.4
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
..|+++.| ..++ +|+++..-|.|++|++++........... .-.+. .+...|++..
T Consensus 15 ~~v~s~~f--qa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g-------~~~it-------~lq~~p~d~l------- 70 (323)
T KOG0322|consen 15 SSVTSVLF--QANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFG-------RLFIT-------NLQSIPNDSL------- 70 (323)
T ss_pred chheehhh--ccch-hhhcccccceEEEEEeecCccchhhhhhc-------cceee-------ceeecCCcch-------
Confidence 88999999 5554 69999999999999999887655544221 11111 3444555433
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC-----C---CEEEEe-cCC--eEEEEec
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-----G---ETFISA-DDL--RINLWNL 261 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~---~~l~s~-~d~--~i~iwd~ 261 (514)
.+-+.|+.+.+|+ +... .+...|+-.++++.|.+. + ..++.. ..+ .+.+-|.
T Consensus 71 ------~tqgRd~~L~lw~-ia~s----------~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~ 133 (323)
T KOG0322|consen 71 ------DTQGRDPLLILWT-IAYS----------AFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDG 133 (323)
T ss_pred ------hhcCCCceEEEEE-ccCc----------ceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhcc
Confidence 7888999999998 3221 112344444555555432 1 112221 111 1222222
Q ss_pred cCCCceeeeeccCCCcccccCCceEEEEEecC-CC-cEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeec
Q 010256 262 EISNQSFNIVDVKPANMEDLTEVITSAEFHPT-HC-NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 339 (514)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~-~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (514)
. ... .+. +.+..-....+.+++..+.-+ +. -+++.|.++|.+.+||+.++....+....++. ......
T Consensus 134 g--~~t-qv~-i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv------~~~~as 203 (323)
T KOG0322|consen 134 G--DTT-QVQ-IADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKV------ESPNAS 203 (323)
T ss_pred C--ccc-eeE-ccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccccccc------ccchhh
Confidence 1 111 110 111112233456677664332 21 35667888999999999987543221222221 112456
Q ss_pred cccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeC
Q 010256 340 IIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 418 (514)
Q Consensus 340 ~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 418 (514)
|..++.++.+.+.-..=++|+ +..+..|+++.....+..-..+.-..+ +|..+.+-||++.+||++.
T Consensus 204 h~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknp------------Gv~gvrIRpD~KIlATAGW 271 (323)
T KOG0322|consen 204 HKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNP------------GVSGVRIRPDGKILATAGW 271 (323)
T ss_pred ccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCC------------CccceEEccCCcEEeeccc
Confidence 778999999987544444443 367888888752122111111111000 1227889999999999999
Q ss_pred CCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 419 SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 419 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
|++||||..++... ...++.|+..|++++|+|+..++|.+|.|+.|.+
T Consensus 272 D~RiRVyswrtl~p-LAVLkyHsagvn~vAfspd~~lmAaaskD~rISL 319 (323)
T KOG0322|consen 272 DHRIRVYSWRTLNP-LAVLKYHSAGVNAVAFSPDCELMAAASKDARISL 319 (323)
T ss_pred CCcEEEEEeccCCc-hhhhhhhhcceeEEEeCCCCchhhhccCCceEEe
Confidence 99999999998854 4899999999999999999999999999999988
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.2e-16 Score=146.66 Aligned_cols=260 Identities=13% Similarity=0.174 Sum_probs=179.2
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
..|.++.|+|.. ..+++.|+.+|.|.+||++.+.......
T Consensus 243 s~v~~~~f~p~~-p~ll~gG~y~GqV~lWD~~~~~~~~~s~--------------------------------------- 282 (555)
T KOG1587|consen 243 SEVTCLKFCPFD-PNLLAGGCYNGQVVLWDLRKGSDTPPSG--------------------------------------- 282 (555)
T ss_pred CceeEEEeccCC-cceEEeeccCceEEEEEccCCCCCCCcc---------------------------------------
Confidence 679999999854 4688899999999999998765211000
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC--CCEEEEe-cCCeEEEEeccCCCceee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
.......|..++..+.|..+ +.-++++ .||.|..|+++.-.....
T Consensus 283 --------------------------------ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e 330 (555)
T KOG1587|consen 283 --------------------------------LSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVE 330 (555)
T ss_pred --------------------------------cccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchh
Confidence 00012578888999988654 3447777 999999998875443322
Q ss_pred eeccCCCc----ccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecccccee
Q 010256 270 IVDVKPAN----MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (514)
Q Consensus 270 ~~~~~~~~----~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 345 (514)
.....+.. -......+++++|.+..++.|+.|+.+|.|.--+........ ...++.+ ..+..|.++|.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~--~~~~~~~------~~~~~h~g~v~ 402 (555)
T KOG1587|consen 331 GLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAP--EVSYKGH------STFITHIGPVY 402 (555)
T ss_pred hcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccc--ccccccc------ccccccCcceE
Confidence 21111111 112345689999999988999999999998763332222110 1222222 23566789999
Q ss_pred EEEEecCCC-EEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCC-EEEEEeCCCcEE
Q 010256 346 DIKFARNGR-HILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYSNLFR 423 (514)
Q Consensus 346 ~~~~s~~g~-~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~ 423 (514)
++.++|=+. ++.++.|-+++||.......++..+..+... +++++|||... .++++..||.+.
T Consensus 403 ~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~---------------v~~vaWSptrpavF~~~d~~G~l~ 467 (555)
T KOG1587|consen 403 AVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDY---------------VTDVAWSPTRPAVFATVDGDGNLD 467 (555)
T ss_pred eeecCCCccceeeeeccceeEeccccCCCCcchhhhhccce---------------eeeeEEcCcCceEEEEEcCCCcee
Confidence 999999554 4445668899999988336666666555433 45899999775 566778899999
Q ss_pred EEecCCCceee-eeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 424 VFGCSEGSAES-TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 424 iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
|||+....... .+...+....+.+.++++++.|+.|...|.+.+
T Consensus 468 iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~ 512 (555)
T KOG1587|consen 468 IWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHI 512 (555)
T ss_pred hhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEE
Confidence 99997543322 444445666777888999999999999999998
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.5e-17 Score=137.65 Aligned_cols=211 Identities=13% Similarity=0.169 Sum_probs=157.2
Q ss_pred ccccccceEEEEEcC-CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccc
Q 010256 31 EVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~-~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (514)
..+|+.+|..++|+| +...+|+|+.|.+|.||++..+... .+-..+...+.||.
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~----------------~~ltepvv~L~gH~--------- 131 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLT----------------RDLTEPVVELYGHQ--------- 131 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccc----------------cCcccceEEEeecc---------
Confidence 458999999999999 6679999999999999998766543 11223567889998
Q ss_pred ccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
..|.-++|+|... +.|++++.|++|.+||+.+++....
T Consensus 132 ---rrVg~V~wHPtA~-NVLlsag~Dn~v~iWnv~tgeali~-------------------------------------- 169 (472)
T KOG0303|consen 132 ---RRVGLVQWHPTAP-NVLLSAGSDNTVSIWNVGTGEALIT-------------------------------------- 169 (472)
T ss_pred ---eeEEEEeecccch-hhHhhccCCceEEEEeccCCceeee--------------------------------------
Confidence 8999999998665 5899999999999999998863211
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCcee
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 268 (514)
..|.+.|.+++|+.+|.+|++. .|..|++||.++++...
T Consensus 170 ----------------------------------------l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~ 209 (472)
T KOG0303|consen 170 ----------------------------------------LDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVS 209 (472)
T ss_pred ----------------------------------------cCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEee
Confidence 2277889999999999999998 99999999999776543
Q ss_pred eeeccCCCccccc-CCceEEEEEecCCCcEEEEEec---CCeEEEEEcCCCccccccccceeccCCCCccceeeccccce
Q 010256 269 NIVDVKPANMEDL-TEVITSAEFHPTHCNMLAYSSS---KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (514)
Q Consensus 269 ~~~~~~~~~~~~~-~~~i~~v~~~p~~~~~l~~~~~---dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 344 (514)
+ -.+| ......+.|-.++ .++.+|-. ++.+-+||..+-..... ...++.. +.|
T Consensus 210 e--------~~~heG~k~~Raifl~~g-~i~tTGfsr~seRq~aLwdp~nl~eP~~-~~elDtS-------------nGv 266 (472)
T KOG0303|consen 210 E--------GVAHEGAKPARAIFLASG-KIFTTGFSRMSERQIALWDPNNLEEPIA-LQELDTS-------------NGV 266 (472)
T ss_pred e--------cccccCCCcceeEEeccC-ceeeeccccccccceeccCcccccCcce-eEEeccC-------------Cce
Confidence 2 1233 3345677788888 65444432 67899999876543210 1122211 356
Q ss_pred eEEEEecCCCEEEEE--eCCeEEEEEccC
Q 010256 345 SDIKFARNGRHILSR--DYMTLKLWDINM 371 (514)
Q Consensus 345 ~~~~~s~~g~~l~~~--~~~~i~iwd~~~ 371 (514)
.---|.+|...++.+ +|+.|+.|.+..
T Consensus 267 l~PFyD~dt~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 267 LLPFYDPDTSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred EEeeecCCCCEEEEEecCCcceEEEEecC
Confidence 656677888877764 469999999986
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-15 Score=140.31 Aligned_cols=274 Identities=9% Similarity=0.069 Sum_probs=163.9
Q ss_pred cCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCC
Q 010256 199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPA 276 (514)
Q Consensus 199 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~ 276 (514)
++...++.|.+|+ +... . .....+.+ .+.+....++++|++++|+++ .++.|.+|+++..... ....
T Consensus 6 ~~~~~~~~I~~~~-~~~~-g--~l~~~~~~--~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l-~~~~---- 74 (330)
T PRK11028 6 IASPESQQIHVWN-LNHE-G--ALTLLQVV--DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL-TFAA---- 74 (330)
T ss_pred EEcCCCCCEEEEE-ECCC-C--ceeeeeEE--ecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce-EEee----
Confidence 5556789999999 4321 1 11112221 223556788999999988765 6899999999732222 1111
Q ss_pred cccccCCceEEEEEecCCCcEEEEEe-cCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCE
Q 010256 277 NMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRH 355 (514)
Q Consensus 277 ~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 355 (514)
.. ........++|+|++ +++++++ .++.|.+|++.+..........+.. ......++++|+|++
T Consensus 75 ~~-~~~~~p~~i~~~~~g-~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-------------~~~~~~~~~~p~g~~ 139 (330)
T PRK11028 75 ES-PLPGSPTHISTDHQG-RFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-------------LEGCHSANIDPDNRT 139 (330)
T ss_pred ee-cCCCCceEEEECCCC-CEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-------------CCcccEeEeCCCCCE
Confidence 11 122346789999999 6666655 4899999999643222111111111 124567889999999
Q ss_pred EEEEe--CCeEEEEEccCCCCcee----eeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeC-CCcEEEEecC
Q 010256 356 ILSRD--YMTLKLWDINMDSGPVA----TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SNLFRVFGCS 428 (514)
Q Consensus 356 l~~~~--~~~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~ 428 (514)
+++.+ ++.|.+||+...+.... ......+ .. ...++|+|||++++++.. ++.|.+|++.
T Consensus 140 l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-----------~~---p~~~~~~pdg~~lyv~~~~~~~v~v~~~~ 205 (330)
T PRK11028 140 LWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG-----------AG---PRHMVFHPNQQYAYCVNELNSSVDVWQLK 205 (330)
T ss_pred EEEeeCCCCEEEEEEECCCCcccccCCCceecCCC-----------CC---CceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 97653 38999999986232211 0111111 00 116899999999988775 8999999997
Q ss_pred C--Cce-eeeeecCC------CcceeEEEECCCCCceeecC-CCCeEEEeeCCCCC-ccccCCcccccccceEEEEEcCC
Q 010256 429 E--GSA-ESTTLEAS------KNPMRRQVQTPSRPSRPLGS-LSGVVRRVKGADNS-ALDANGNAFDFSMKLLHLAWHPS 497 (514)
Q Consensus 429 ~--~~~-~~~~~~~~------~~~v~~~~~~~~~~~l~s~s-~d~~v~i~~~~~~~-~~~~~~~~~~~~~~v~~~~~spd 497 (514)
. +.. ....+... ......+.++|++++++++. .++.|.+++-.... ...+.. ..........++++||
T Consensus 206 ~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~-~~~~~~~p~~~~~~~d 284 (330)
T PRK11028 206 DPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEG-HQPTETQPRGFNIDHS 284 (330)
T ss_pred CCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeE-EEeccccCCceEECCC
Confidence 3 221 12222211 11223588999999988875 46788873211000 000111 0011234568999999
Q ss_pred CCEEEEEe--cCcEEEEe
Q 010256 498 ENSIACAA--SNSLYMYY 513 (514)
Q Consensus 498 ~~~l~~~~--~~~~~i~~ 513 (514)
|++|+++. ++.+.+|.
T Consensus 285 g~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 285 GKYLIAAGQKSHHISVYE 302 (330)
T ss_pred CCEEEEEEccCCcEEEEE
Confidence 99999776 66788874
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-16 Score=145.00 Aligned_cols=230 Identities=12% Similarity=0.124 Sum_probs=167.9
Q ss_pred cccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010256 229 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 307 (514)
Q Consensus 229 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i 307 (514)
+++|++.|++++|+.||+.+++| .|..|.+|...-.+.. -..|.+.|.|+.|+|-. ..|++++-. ..
T Consensus 49 LKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L----------kYSH~D~IQCMsFNP~~-h~LasCsLs-dF 116 (1081)
T KOG1538|consen 49 LKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL----------KYSHNDAIQCMSFNPIT-HQLASCSLS-DF 116 (1081)
T ss_pred cccccceEEEEEEccCCceeccCCCceeEEEeccccccee----------eeccCCeeeEeecCchH-HHhhhcchh-hc
Confidence 48999999999999999999999 9999999997644432 13489999999999987 788888764 45
Q ss_pred EEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccc
Q 010256 308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLR 386 (514)
Q Consensus 308 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~ 386 (514)
-+|......... .+ ....+.+++|..||++++.|- +|+|.|-+.. +++...+....+..
T Consensus 117 glWS~~qK~V~K-----~k-------------ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~--gEek~~I~Rpgg~N 176 (1081)
T KOG1538|consen 117 GLWSPEQKSVSK-----HK-------------SSSRIICCSWTNDGQYLALGMFNGTISIRNKN--GEEKVKIERPGGSN 176 (1081)
T ss_pred cccChhhhhHHh-----hh-------------hheeEEEeeecCCCcEEEEeccCceEEeecCC--CCcceEEeCCCCCC
Confidence 678766543211 00 124689999999999999985 5999998654 55555554433321
Q ss_pred cccccccccCCccceeeEEEcCCC-----CEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCC
Q 010256 387 PKLCDLYENDSIFDKFECCLSGDG-----GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL 461 (514)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~~~-----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~ 461 (514)
. .|++++|+|.. ..++......++.+|.+... .+ ..-+.-.-...++.+-++|.|++.|+.
T Consensus 177 ---------s---piwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-~I-gk~r~L~FdP~CisYf~NGEy~LiGGs 242 (1081)
T KOG1538|consen 177 ---------S---PIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-QI-GKDRALNFDPCCISYFTNGEYILLGGS 242 (1081)
T ss_pred ---------C---CceEEEecCCCCCCccceEEEEeccceeEEEEecce-ee-cccccCCCCchhheeccCCcEEEEccC
Confidence 1 25699999964 36888888899999988632 22 111111222347788899999999999
Q ss_pred CCeEEE--eeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecCcEE
Q 010256 462 SGVVRR--VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLY 510 (514)
Q Consensus 462 d~~v~i--~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~ 510 (514)
|+.+.+ .+|-++- +.-+....|..++.+|++..++.|..|+.+
T Consensus 243 dk~L~~fTR~GvrLG------Tvg~~D~WIWtV~~~PNsQ~v~~GCqDGTi 287 (1081)
T KOG1538|consen 243 DKQLSLFTRDGVRLG------TVGEQDSWIWTVQAKPNSQYVVVGCQDGTI 287 (1081)
T ss_pred CCceEEEeecCeEEe------eccccceeEEEEEEccCCceEEEEEccCee
Confidence 999999 3333222 222367899999999999999999977654
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.1e-15 Score=127.34 Aligned_cols=159 Identities=12% Similarity=0.166 Sum_probs=118.0
Q ss_pred cCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEe--cCCeEEEEE
Q 010256 234 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS--SKGSIRLID 311 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~--~dg~i~~wd 311 (514)
..|.++.++ .+.|+++-...|+|||+++.+....+- +...+...+.++.+++.+ .+++.-+ ..|.|.+||
T Consensus 88 t~IL~VrmN--r~RLvV~Lee~IyIydI~~MklLhTI~-----t~~~n~~gl~AlS~n~~n-~ylAyp~s~t~GdV~l~d 159 (391)
T KOG2110|consen 88 TSILAVRMN--RKRLVVCLEESIYIYDIKDMKLLHTIE-----TTPPNPKGLCALSPNNAN-CYLAYPGSTTSGDVVLFD 159 (391)
T ss_pred CceEEEEEc--cceEEEEEcccEEEEecccceeehhhh-----ccCCCccceEeeccCCCC-ceEEecCCCCCceEEEEE
Confidence 456777775 456777722339999999777654431 222345556777777766 5776533 368999999
Q ss_pred cCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-Ce-EEEEEccCCCCceeeeeecccccccc
Q 010256 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MT-LKLWDINMDSGPVATFQVHEHLRPKL 389 (514)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~-i~iwd~~~~~~~~~~~~~~~~~~~~~ 389 (514)
..+-+.. ..+..|.+++.+++|+++|.+||++++ |+ ||||.+.. ++.+..+........
T Consensus 160 ~~nl~~v----------------~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~-G~kl~eFRRG~~~~~-- 220 (391)
T KOG2110|consen 160 TINLQPV----------------NTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE-GQKLYEFRRGTYPVS-- 220 (391)
T ss_pred cccceee----------------eEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC-ccEeeeeeCCceeeE--
Confidence 9875542 235667799999999999999999988 54 79999987 888888876544322
Q ss_pred ccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 390 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 390 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
|.+++|+|++++|++.+..++|+||.++..
T Consensus 221 -----------IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 221 -----------IYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred -----------EEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 459999999999999999999999998753
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.8e-15 Score=141.52 Aligned_cols=304 Identities=17% Similarity=0.260 Sum_probs=204.1
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
...|+-.++|.++||+++++|+|..||+|.+|.--..+. +-...+.++-|.
T Consensus 201 ~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~-------------------~~~t~t~lHWH~---------- 251 (792)
T KOG1963|consen 201 TVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD-------------------DSETCTLLHWHH---------- 251 (792)
T ss_pred hhhhcccceeEEeccccceEEEeccCCcEEEEecccccc-------------------ccccceEEEecc----------
Confidence 567888899999999999999999999999998533110 111335577776
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
+.|+++.| +.+|.+|++|+..+.+.+|.+.+++...
T Consensus 252 --~~V~~L~f--S~~G~~LlSGG~E~VLv~Wq~~T~~kqf---------------------------------------- 287 (792)
T KOG1963|consen 252 --DEVNSLSF--SSDGAYLLSGGREGVLVLWQLETGKKQF---------------------------------------- 287 (792)
T ss_pred --cccceeEE--ecCCceEeecccceEEEEEeecCCCccc----------------------------------------
Confidence 78999999 6788999999999999999998876211
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
+..-.++|..+.++||+.+.+.. .|..|.+....+......
T Consensus 288 --------------------------------------LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~t 329 (792)
T KOG1963|consen 288 --------------------------------------LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKST 329 (792)
T ss_pred --------------------------------------ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhh
Confidence 22333678899999999999888 999999988754443333
Q ss_pred eeccCCC---cccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeE
Q 010256 270 IVDVKPA---NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (514)
Q Consensus 270 ~~~~~~~---~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 346 (514)
+-.+++. .-....+-.+.++++|.- +.++..+..|.|.+||+.+...+.+ ............ ..+.-.+++
T Consensus 330 Isgi~~~~~~~k~~~~~l~t~~~idpr~-~~~vln~~~g~vQ~ydl~td~~i~~-~~v~~~n~~~~~----~n~~v~ita 403 (792)
T KOG1963|consen 330 ISGIKPPTPSTKTRPQSLTTGVSIDPRT-NSLVLNGHPGHVQFYDLYTDSTIYK-LQVCDENYSDGD----VNIQVGITA 403 (792)
T ss_pred ccCccCCCccccccccccceeEEEcCCC-CceeecCCCceEEEEeccccceeee-EEEEeecccCCc----ceeEEeeee
Confidence 3222221 112235566788999955 6788889999999999988665321 222221111111 023346888
Q ss_pred EEEecCCCEEEEEe---------C--CeEEEEEccCCCCceeee-----eeccccccccccccccCCccceeeEEEcCCC
Q 010256 347 IKFARNGRHILSRD---------Y--MTLKLWDINMDSGPVATF-----QVHEHLRPKLCDLYENDSIFDKFECCLSGDG 410 (514)
Q Consensus 347 ~~~s~~g~~l~~~~---------~--~~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 410 (514)
++.+..|.++++.. + -.+++|-... ...-..+ ..|.... +..+..++..
T Consensus 404 v~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~-~~kt~~L~T~I~~PH~~~~--------------vat~~~~~~r 468 (792)
T KOG1963|consen 404 VARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNP-NSKTFILNTKINNPHGNAF--------------VATIFLNPTR 468 (792)
T ss_pred ehhhccceEEEEeeeeehhhhccCceEEEEEEEEcC-CcceeEEEEEEecCCCcee--------------EEEEEecCcc
Confidence 88888899999852 2 3567887764 2211111 1122111 1123334433
Q ss_pred C-EEEEEeCCCcEEEEecCCCcee---------eeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 411 G-RVATGSYSNLFRVFGCSEGSAE---------STTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 411 ~-~l~s~~~dg~i~iwd~~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
. ..++++.||.++||-+...+.. ...-..|..++.+.+|+.||..|+ .+.|++|.+
T Consensus 469 s~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla-~s~~~~Iti 534 (792)
T KOG1963|consen 469 SVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLA-VSFDDTITI 534 (792)
T ss_pred cceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEE-EecCCEEEE
Confidence 3 7889999999999998432111 122225789999999999996555 557888888
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-16 Score=142.24 Aligned_cols=241 Identities=19% Similarity=0.245 Sum_probs=159.8
Q ss_pred cccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccc
Q 010256 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (514)
Q Consensus 30 ~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (514)
+..+|++-|+|++|+.+|.+|++|+.|-.+.|||.-..+. ....-.||.
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl----------------------lhsI~TgHt--------- 93 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL----------------------LHSISTGHT--------- 93 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcce----------------------eeeeecccc---------
Confidence 4579999999999999999999999999999999764332 223356787
Q ss_pred ccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
..|.++.|.|..+.+++++|+.|..|+++|+...+....
T Consensus 94 ---aNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~-------------------------------------- 132 (758)
T KOG1310|consen 94 ---ANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGM-------------------------------------- 132 (758)
T ss_pred ---cceeEEeeeccCCCeEEEeccCcceEEEEeccccccccc--------------------------------------
Confidence 889999999988889999999999999999975431000
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCC-CEEEEe-cCCeEEEEeccCCCce
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQS 267 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~ 267 (514)
.+|. ....+. ...|...|..++..|++ +.+.++ .||+|+-+|++....+
T Consensus 133 -------------d~~~---------------~~~~~~-~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c 183 (758)
T KOG1310|consen 133 -------------DHGM---------------EETTRC-WSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVC 183 (758)
T ss_pred -------------ccCc---------------cchhhh-hhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccC
Confidence 0000 001111 25788889999999998 677788 9999999999864332
Q ss_pred eeeecc--CCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccccc--ceeccCCCC-ccceeeccc-
Q 010256 268 FNIVDV--KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK--LFEEQEAPG-TRSFFTEII- 341 (514)
Q Consensus 268 ~~~~~~--~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~- 341 (514)
..-.+. ....+...--...++..+|..+.+|++|+.|-..++||.+.......... ..-.+.+-. -+.+..+|.
T Consensus 184 ~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlk 263 (758)
T KOG1310|consen 184 NPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLK 263 (758)
T ss_pred CccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCcccc
Confidence 110000 00011112234678999999989999999999999999643211100000 000000000 001111111
Q ss_pred ----------cceeEEEEecCCCEEEEE-eCCeEEEEEccC
Q 010256 342 ----------ASISDIKFARNGRHILSR-DYMTLKLWDINM 371 (514)
Q Consensus 342 ----------~~i~~~~~s~~g~~l~~~-~~~~i~iwd~~~ 371 (514)
..++-+.|+|+|.-|+.. +.-.|+++|+..
T Consensus 264 n~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 264 NSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred CcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecC
Confidence 236778999999877764 335899999876
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.4e-16 Score=150.06 Aligned_cols=289 Identities=17% Similarity=0.213 Sum_probs=179.0
Q ss_pred cCCccceeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCC
Q 010256 85 SRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGN 164 (514)
Q Consensus 85 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
.|+|.+..++.+..|. ..|..++.+ ++.+.+|++|+.||+||+|+.+.-.... ...
T Consensus 1033 gW~p~G~lVAhL~Ehs------------~~v~k~a~s-~~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s~---------- 1088 (1431)
T KOG1240|consen 1033 GWNPRGILVAHLHEHS------------SAVIKLAVS-SEHTSLFVSGSDDGTVKVWNLRKLEGEG-GSA---------- 1088 (1431)
T ss_pred CCCccceEeehhhhcc------------ccccceeec-CCCCceEEEecCCceEEEeeehhhhcCc-cee----------
Confidence 3577888888888887 778888886 3555799999999999999987532110 000
Q ss_pred cceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEE-EEECC
Q 010256 165 GPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINS-ISNNS 243 (514)
Q Consensus 165 ~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~ 243 (514)
-+.+.+++.+........+...+.++.++.||.|++.++-..........+.+..-....+.+.+ -+|..
T Consensus 1089 ---------rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~ 1159 (1431)
T KOG1240|consen 1089 ---------RSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTA 1159 (1431)
T ss_pred ---------eeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccc
Confidence 00234444444444444555555558999999999988322111222222222221122233333 33433
Q ss_pred C-CC-EEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccc
Q 010256 244 D-GE-TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT 320 (514)
Q Consensus 244 ~-~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 320 (514)
. +. .++.+ .-+.|..||+++......+ ......+.|++++.+|.+ +++++|+..|.+.+||+|-+..
T Consensus 1160 ~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l------k~~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~--- 1229 (1431)
T KOG1240|consen 1160 IVQSHVLVYATDLSRIVSWDTRMRHDAWRL------KNQLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVP--- 1229 (1431)
T ss_pred cccceeEEEEEeccceEEecchhhhhHHhh------hcCccccceeEEEecCCc-eEEEEecCCceEEEEEeecCce---
Confidence 2 33 66677 8899999999865544332 233346789999999998 8999999999999999997665
Q ss_pred cccceeccCCCCccceeeccccceeEEEEecC---CCEEEE-Ee-C-CeEEEEEccCCCCceeeeeeccccccccccccc
Q 010256 321 HSKLFEEQEAPGTRSFFTEIIASISDIKFARN---GRHILS-RD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYE 394 (514)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---g~~l~~-~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (514)
+..|+-+ +..+|+.+..+|- ....++ +. . +.|.+|++.+ +....++....+. ..+.....
T Consensus 1230 -i~sw~~P-----------~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~-g~~~~vl~~s~~~-p~ls~~~P 1295 (1431)
T KOG1240|consen 1230 -ILSWEHP-----------ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMET-GLRQTVLWASDGA-PILSYALP 1295 (1431)
T ss_pred -eecccCc-----------ccCCcceEEeeccCCCCceEEEecccCCCceeeeeccc-CcceEEEEcCCCC-cchhhhcc
Confidence 3333322 2257788877763 345555 43 3 8999999997 6555555433111 11111111
Q ss_pred cC-----CccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 395 ND-----SIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 395 ~~-----~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
.+ .......+++..-+.++.+|+.|..|+.||....
T Consensus 1296 s~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1296 SNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred cccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 10 0111123455556678899999999999998764
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-16 Score=138.38 Aligned_cols=196 Identities=15% Similarity=0.160 Sum_probs=145.5
Q ss_pred EEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCC
Q 010256 237 NSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 315 (514)
Q Consensus 237 ~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~ 315 (514)
..++|+.+|..++++ .||++|+|+........ ....|...|.++.|+||| .+|++-+.| ..+||+.+++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l--------~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g 217 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL--------EEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTG 217 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhh--------hhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccC
Confidence 689999999999999 99999999966444332 345688999999999999 899999999 9999999998
Q ss_pred ccccccccceeccCCCCccceeeccccceeEEEEecCC---CEE-EE-EeC-CeEEEEEccCCCCceeeeeecccccccc
Q 010256 316 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG---RHI-LS-RDY-MTLKLWDINMDSGPVATFQVHEHLRPKL 389 (514)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g---~~l-~~-~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 389 (514)
..... ...++. ......+.|+.|+ .+. ++ ... +.|+.||+....+. ..++.....
T Consensus 218 ~~~a~-~t~~~k-------------~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~~~~~~---- 278 (398)
T KOG0771|consen 218 AALAR-KTPFSK-------------DEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLRLRKKI---- 278 (398)
T ss_pred chhhh-cCCccc-------------chhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccchhhhh----
Confidence 54321 111111 1346778888766 222 33 234 77888777642221 111111110
Q ss_pred ccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 390 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 390 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.....|.+++.++||+++|.|+.||.|-|++..+.+.....-+.|...|+.+.|+|+.+++++.|.|....+
T Consensus 279 ------~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 279 ------KRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred ------hccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeE
Confidence 001124499999999999999999999999999887666777899999999999999999999999988887
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.7e-16 Score=147.17 Aligned_cols=168 Identities=14% Similarity=0.119 Sum_probs=110.8
Q ss_pred EEEECCCCCEEEEe--cCCeEEEE--eccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEE-EEecCCeEEEEEc
Q 010256 238 SISNNSDGETFISA--DDLRINLW--NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSKGSIRLIDM 312 (514)
Q Consensus 238 ~~~~~~~~~~l~s~--~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~-~~~~dg~i~~wd~ 312 (514)
.++|+|||+.|+.+ .+|.+.|| |+.++. .. .+..+...+....|+|+| +.|+ ++..++...||++
T Consensus 252 ~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~--------~lt~~~~~~~~~~wSpDG-~~i~f~s~~~g~~~I~~~ 321 (429)
T PRK01742 252 APAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PS--------QLTSGAGNNTEPSWSPDG-QSILFTSDRSGSPQVYRM 321 (429)
T ss_pred ceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eE--------eeccCCCCcCCEEECCCC-CEEEEEECCCCCceEEEE
Confidence 47899999988875 57766665 554332 22 234455667889999999 5555 4446788889887
Q ss_pred CCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccc
Q 010256 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDL 392 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 392 (514)
...... ...+ .+.. ....|+|||++|+..+...+.+||+.+ ++... +.....
T Consensus 322 ~~~~~~---~~~l-------------~~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~-g~~~~-lt~~~~-------- 373 (429)
T PRK01742 322 SASGGG---ASLV-------------GGRG--YSAQISADGKTLVMINGDNVVKQDLTS-GSTEV-LSSTFL-------- 373 (429)
T ss_pred ECCCCC---eEEe-------------cCCC--CCccCCCCCCEEEEEcCCCEEEEECCC-CCeEE-ecCCCC--------
Confidence 543211 1111 1112 357899999999886555567799876 44322 211110
Q ss_pred cccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecC--CCceeeeeecCCCcceeEEEECCC
Q 010256 393 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS--EGSAESTTLEASKNPMRRQVQTPS 452 (514)
Q Consensus 393 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~v~~~~~~~~ 452 (514)
...+.|+|||++|+.++.++.+.+|.+. ++ .....+..|...+...+|+|-
T Consensus 374 --------~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G-~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 374 --------DESPSISPNGIMIIYSSTQGLGKVLQLVSADG-RFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred --------CCCceECCCCCEEEEEEcCCCceEEEEEECCC-CceEEccCCCCCCCCcccCCC
Confidence 0167899999999999999988888753 33 344677788888888888875
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.6e-16 Score=127.88 Aligned_cols=254 Identities=12% Similarity=0.190 Sum_probs=173.1
Q ss_pred cccccceEEEEEcCCC-----CeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccc
Q 010256 32 VQEVDIISAIEFDKSG-----DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g-----~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 106 (514)
+.|.-+++.+.|.|+. ++|||. +..+|+|.+......-. ....+..+
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~-------------------~~~~L~~~------- 144 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVE-------------------LQSVLNNN------- 144 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCcee-------------------hhhhhccC-------
Confidence 5789999999999976 467764 33799999875332100 00111111
Q ss_pred cccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEE---EEEeeccCCCccccCCcceecccccCCceeeccCC
Q 010256 107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV---KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183 (514)
Q Consensus 107 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 183 (514)
++-++..++++..|+- -+-+++.+++-|-+..|||++.+.. +..+-.+ ...|+ .++|...+
T Consensus 145 kns~~~aPlTSFDWne-~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAH--------DKEV~-------DIaf~~~s 208 (364)
T KOG0290|consen 145 KNSEFCAPLTSFDWNE-VDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAH--------DKEVY-------DIAFLKGS 208 (364)
T ss_pred cccccCCccccccccc-CCcceeEeecccCeEEEEEEeeccccceeeEEEec--------Cccee-------EEEeccCc
Confidence 1222337899999973 4557899999999999999998732 2222222 23344 67777755
Q ss_pred CccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccC-ccCeEEEEECCC-CCEEEEe--cCCeEEEE
Q 010256 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAH-DYHINSISNNSD-GETFISA--DDLRINLW 259 (514)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~-~~~l~s~--~d~~i~iw 259 (514)
.. ++++.+.||++|++| +...+-... .+.... ..+...++|++. -+++|+- +...|.+.
T Consensus 209 ~~-----------~FASvgaDGSvRmFD-LR~leHSTI-----IYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iL 271 (364)
T KOG0290|consen 209 RD-----------VFASVGADGSVRMFD-LRSLEHSTI-----IYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVIL 271 (364)
T ss_pred cc-----------eEEEecCCCcEEEEE-ecccccceE-----EecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEE
Confidence 53 358999999999999 665543211 111222 456778999875 5666664 68899999
Q ss_pred eccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcc--ccccccceeccCCCCcccee
Q 010256 260 NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL--CDTHSKLFEEQEAPGTRSFF 337 (514)
Q Consensus 260 d~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~ 337 (514)
|++.....+. .+++|.+.|..++|.|..+..|.+++.|....+||+.+... ...++..+.
T Consensus 272 DiR~P~tpva-------~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~----------- 333 (364)
T KOG0290|consen 272 DIRVPCTPVA-------RLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT----------- 333 (364)
T ss_pred EecCCCccee-------hhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-----------
Confidence 9997665442 68999999999999999889999999999999999976432 111122222
Q ss_pred eccccceeEEEEec-CCCEEEEEeCCeEEE
Q 010256 338 TEIIASISDIKFAR-NGRHILSRDYMTLKL 366 (514)
Q Consensus 338 ~~~~~~i~~~~~s~-~g~~l~~~~~~~i~i 366 (514)
-.+.|..+.|++ .+..++.+..+++.+
T Consensus 334 --a~~EVNqi~Ws~~~~Dwiai~~~kklei 361 (364)
T KOG0290|consen 334 --AGGEVNQIQWSSSQPDWIAICFGKKLEI 361 (364)
T ss_pred --ccceeeeeeecccCCCEEEEEecCeeeE
Confidence 225799999996 567888776655554
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.73 E-value=9e-16 Score=147.26 Aligned_cols=295 Identities=14% Similarity=0.166 Sum_probs=184.6
Q ss_pred eeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCC
Q 010256 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (514)
Q Consensus 115 v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (514)
-..+.|+|-.+ .++++...-.|++||.+.++...-+.....+ . ...+.+.+. +..+
T Consensus 1067 pk~~~~hpf~p--~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~-----~-------t~Vs~l~li----------Ne~D 1122 (1387)
T KOG1517|consen 1067 PKTLKFHPFEP--QIAAADDRERIRVWDWEKGRLLNGFDNGAFP-----D-------TRVSDLELI----------NEQD 1122 (1387)
T ss_pred CceeeecCCCc--eeEEcCCcceEEEEecccCceeccccCCCCC-----C-------Cccceeeee----------cccc
Confidence 44566766554 7888887889999999988764433322111 0 111122222 2223
Q ss_pred CCcccCCCCCCcEEeceeeccccccccc----cccccccccCccCeEEEEECCC-CCEEEEecCCeEEEEeccCCCceee
Q 010256 195 NDSSFPPGGVSSLRLPVVVTSQETNLVA----GCRRIYAHAHDYHINSISNNSD-GETFISADDLRINLWNLEISNQSFN 269 (514)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~----~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~d~~i~iwd~~~~~~~~~ 269 (514)
..++++++.||.||||+-.......... ........+..+.=.-+.|... |.++++|+-..|+|||......+..
T Consensus 1123 ~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~d 1202 (1387)
T KOG1517|consen 1123 DALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVAD 1202 (1387)
T ss_pred hhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEee
Confidence 3455999999999999822221111110 1111111111222234567665 5555556889999999985554433
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccc--eeEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS--ISDI 347 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~ 347 (514)
+ -.+....|+++.-+..+++.++.|..||.|++||.|.... +..+..+.. |+.. |..+
T Consensus 1203 i-------P~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~-ds~v~~~R~------------h~~~~~Iv~~ 1262 (1387)
T KOG1517|consen 1203 I-------PYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP-DSLVCVYRE------------HNDVEPIVHL 1262 (1387)
T ss_pred c-------ccCCCccceeecccccCCceEEEeecCCceEEeecccCCc-cccceeecc------------cCCcccceeE
Confidence 2 1224566777766555458999999999999999987543 122344443 4344 9999
Q ss_pred EEecCCCE-EEEEe-CCeEEEEEccCC-CCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEE
Q 010256 348 KFARNGRH-ILSRD-YMTLKLWDINMD-SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 424 (514)
Q Consensus 348 ~~s~~g~~-l~~~~-~~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 424 (514)
.+.+.|-- |++|+ +|.|++||++.+ .....++..|-... .+.+++..++....+|+|+. +.|+|
T Consensus 1263 slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yG------------s~lTal~VH~hapiiAsGs~-q~ikI 1329 (1387)
T KOG1517|consen 1263 SLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYG------------SALTALTVHEHAPIIASGSA-QLIKI 1329 (1387)
T ss_pred EeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccC------------ccceeeeeccCCCeeeecCc-ceEEE
Confidence 99986654 77775 599999999972 11122222222110 01448999999999999998 99999
Q ss_pred EecCCCceeeeeec-------CCCcceeEEEECCCCCceeecCCCCeEEEe
Q 010256 425 FGCSEGSAESTTLE-------ASKNPMRRQVQTPSRPSRPLGSLSGVVRRV 468 (514)
Q Consensus 425 wd~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~ 468 (514)
|++... . ...++ ....++.+++|+|-.-++|.|+.|.+|.++
T Consensus 1330 y~~~G~-~-l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1330 YSLSGE-Q-LNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIY 1378 (1387)
T ss_pred EecChh-h-hcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEe
Confidence 998743 2 22222 233567899999999999999999999994
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.3e-16 Score=133.49 Aligned_cols=192 Identities=15% Similarity=0.127 Sum_probs=136.3
Q ss_pred EEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEE-EeCCeE
Q 010256 286 TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS-RDYMTL 364 (514)
Q Consensus 286 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~i 364 (514)
..++|+++| ..+++|+.||++|+|+..+.... .....|...|.++.|+|||++|++ +.+ ..
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t~----------------l~e~~~~~eV~DL~FS~dgk~lasig~d-~~ 209 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLTI----------------LEEIAHHAEVKDLDFSPDGKFLASIGAD-SA 209 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecCcchhh----------------hhhHhhcCccccceeCCCCcEEEEecCC-ce
Confidence 789999999 89999999999999996554432 113456689999999999999998 455 89
Q ss_pred EEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCC---CE--EEEEeCCCcEEEEecCCCce----eee
Q 010256 365 KLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG---GR--VATGSYSNLFRVFGCSEGSA----EST 435 (514)
Q Consensus 365 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~--l~s~~~dg~i~iwd~~~~~~----~~~ 435 (514)
+||++++ +..+......... .. ...+.|+.|+ .+ .+....-+.|+.|++..... ...
T Consensus 210 ~VW~~~~-g~~~a~~t~~~k~----------~~---~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~ 275 (398)
T KOG0771|consen 210 RVWSVNT-GAALARKTPFSKD----------EM---FSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLR 275 (398)
T ss_pred EEEEecc-CchhhhcCCcccc----------hh---hhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchh
Confidence 9999998 6666555422111 00 1267888777 33 33334556778777654322 112
Q ss_pred eecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEE-ecCcEEE
Q 010256 436 TLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACA-ASNSLYM 511 (514)
Q Consensus 436 ~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~-~~~~~~i 511 (514)
....-...+.+++.+++|+++|.|+.||.|-+++..++.. +..-...|...|+.+.|+||.++++.. ++....+
T Consensus 276 ~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~--~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 276 KKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQR--LQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred hhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeee--eEeehhhheeeeeeEEEcCCcCcccccccCCceeE
Confidence 2223345789999999999999999999999966665552 222233588999999999999999954 4555444
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.6e-15 Score=124.26 Aligned_cols=320 Identities=13% Similarity=0.139 Sum_probs=197.3
Q ss_pred ccceEEEEEcCCCCeEEEe-cCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccc
Q 010256 35 VDIISAIEFDKSGDHLATG-DRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (514)
-+.|..+.|..|..+++++ ..++.|.+|++...+ ....+.... .
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe-----------------------w~ckIdeg~------------a 92 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE-----------------------WYCKIDEGQ------------A 92 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecce-----------------------eEEEeccCC------------C
Confidence 3678889999988776655 578899999986443 223333333 7
Q ss_pred ceeEEEEeeCCCCcE-EEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 114 KINKIRWCQSANSAL-YLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 114 ~v~~i~~~~~~~~~~-l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
++.+++| +|+|+. |.+..-|-.|.+|.+.+.+...+...+. .+ ..++|.|||+...+....
T Consensus 93 gls~~~W--SPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~---------~~-------kg~~f~~dg~f~ai~sRr 154 (447)
T KOG4497|consen 93 GLSSISW--SPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKT---------NV-------KGYAFHPDGQFCAILSRR 154 (447)
T ss_pred cceeeeE--CCCcceEeeeecceeEEEEEEeccceeEEeccccc---------Cc-------eeEEECCCCceeeeeecc
Confidence 7999999 567744 5566789999999999887554433221 11 278999999987322211
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-c--CCeEEEEeccCCCceee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D--DLRINLWNLEISNQSFN 269 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~--d~~i~iwd~~~~~~~~~ 269 (514)
...+++-..+ -+-|. ..+.+ .-.+-....+.|+|||+.|+.= . +-.|..|..
T Consensus 155 DCkdyv~i~~----c~~W~------------ll~~f-~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~-------- 209 (447)
T KOG4497|consen 155 DCKDYVQISS----CKAWI------------LLKEF-KLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYER-------- 209 (447)
T ss_pred cHHHHHHHHh----hHHHH------------HHHhc-CCCcccccCceECCCCcEEEEecchhhheeeeeee--------
Confidence 1111110000 00011 11111 2334556789999999888763 1 333333221
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccc---------------------c------
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH---------------------S------ 322 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~---------------------~------ 322 (514)
.-.+..++|+|.+ ++|+.|+.|+.+|+.+--+-+...+. .
T Consensus 210 ------------~lG~k~v~wsP~~-qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~c 276 (447)
T KOG4497|consen 210 ------------GLGLKFVEWSPCN-QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHC 276 (447)
T ss_pred ------------ccceeEEEecccc-ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccc
Confidence 2446788999988 89999999999988654322111000 0
Q ss_pred -----------------cceeccCCCCcc------ceeeccccceeEEEEecCCCEEEEEeC---CeEEEEEccCCCCce
Q 010256 323 -----------------KLFEEQEAPGTR------SFFTEIIASISDIKFARNGRHILSRDY---MTLKLWDINMDSGPV 376 (514)
Q Consensus 323 -----------------~~~~~~~~~~~~------~~~~~~~~~i~~~~~s~~g~~l~~~~~---~~i~iwd~~~~~~~~ 376 (514)
..++....+... .-+......+.-++|++|..++++..| ..+.+||++. .+..
T Consensus 277 Lsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~-l~l~ 355 (447)
T KOG4497|consen 277 LSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN-LKLH 355 (447)
T ss_pred cccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechh-hhhh
Confidence 000000000000 011122346778999999999999754 7899999985 4433
Q ss_pred eeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCce
Q 010256 377 ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSR 456 (514)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 456 (514)
..+... +. |....|+|....|+.+....++++|.... ....-.....-.|..+.|..+|..+
T Consensus 356 avLiQk-~p---------------iraf~WdP~~prL~vctg~srLY~W~psg--~~~V~vP~~GF~i~~l~W~~~g~~i 417 (447)
T KOG4497|consen 356 AVLIQK-HP---------------IRAFEWDPGRPRLVVCTGKSRLYFWAPSG--PRVVGVPKKGFNIQKLQWLQPGEFI 417 (447)
T ss_pred hhhhhc-cc---------------eeEEEeCCCCceEEEEcCCceEEEEcCCC--ceEEecCCCCceeeeEEecCCCcEE
Confidence 333222 22 22788999988888887778899998864 3333334444678899999999999
Q ss_pred eecCCCCe
Q 010256 457 PLGSLSGV 464 (514)
Q Consensus 457 ~s~s~d~~ 464 (514)
+..+.|..
T Consensus 418 ~l~~kDaf 425 (447)
T KOG4497|consen 418 VLCGKDAF 425 (447)
T ss_pred EEEcCCce
Confidence 88887753
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-13 Score=133.09 Aligned_cols=320 Identities=23% Similarity=0.388 Sum_probs=220.0
Q ss_pred cceEEEEE-cCCCC-eEEEecC-CCeEEEEEecC-CcccCCcccccccccccccCCccceeeeeeccCCCcccccccccc
Q 010256 36 DIISAIEF-DKSGD-HLATGDR-GGRVVLFERTD-TRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (514)
Q Consensus 36 ~~V~~~~~-s~~g~-~l~tg~~-dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (514)
..+..+.+ ++++. +++..+. |+.+.+|+... .. ....+..|.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-----------------------~~~~~~~~~----------- 155 (466)
T COG2319 110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGK-----------------------LIRTLEGHS----------- 155 (466)
T ss_pred CceeeEEEECCCcceEEeccCCCCccEEEEEecCCCe-----------------------EEEEEecCc-----------
Confidence 46778887 88887 5555444 99999999875 22 345677787
Q ss_pred ccceeEEEEeeCCCCcEEEEeeC-CCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 112 EEKINKIRWCQSANSALYLLSTN-DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|..+.|. +++..+++++. |+.+++|++..+........+ ...+. .+.|+|++..+
T Consensus 156 -~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~-------~~~~~~~~~~~---- 213 (466)
T COG2319 156 -ESVTSLAFS--PDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGH--------TDPVS-------SLAFSPDGGLL---- 213 (466)
T ss_pred -ccEEEEEEC--CCCCEEEecCCCCCceEEEEcCCCceEEeeccC--------CCceE-------EEEEcCCcceE----
Confidence 789999994 55667888875 999999999986555544442 23333 77888888732
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
+++++.++.+++|+ ... .......+.+|.... ...|+|++..++++ .|+.+++|+.........
T Consensus 214 -------~~~~~~d~~i~~wd-~~~------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 278 (466)
T COG2319 214 -------IASGSSDGTIRLWD-LST------GKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLR 278 (466)
T ss_pred -------EEEecCCCcEEEEE-CCC------CcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEE
Confidence 14458999999997 221 112221236676665 34899999888877 999999999986654222
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
. +..|...+.++.|+|++ ..+++++.|+.+++||+++...... .. ...|...+..+.|
T Consensus 279 ~-------~~~~~~~v~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~----~~----------~~~~~~~~~~~~~ 336 (466)
T COG2319 279 T-------LSGHSSSVLSVAFSPDG-KLLASGSSDGTVRLWDLETGKLLSS----LT----------LKGHEGPVSSLSF 336 (466)
T ss_pred E-------EecCCccEEEEEECCCC-CEEEEeeCCCcEEEEEcCCCceEEE----ee----------ecccCCceEEEEE
Confidence 1 24578899999999977 6777788898999998887654321 11 1234456888999
Q ss_pred ecCCCEEEEE--eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEE-EeCCCcEEEEe
Q 010256 350 ARNGRHILSR--DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT-GSYSNLFRVFG 426 (514)
Q Consensus 350 s~~g~~l~~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s-~~~dg~i~iwd 426 (514)
.+++..++.+ .++.+.+|++.. ............ +..+.+++ ...++. +..++.+.+|+
T Consensus 337 ~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~----------------~~~~~~~~-~~~~~~~~~~~~~~~~~~ 398 (466)
T COG2319 337 SPDGSLLVSGGSDDGTIRLWDLRT-GKPLKTLEGHSN----------------VLSVSFSP-DGRVVSSGSTDGTVRLWD 398 (466)
T ss_pred CCCCCEEEEeecCCCcEEeeecCC-CceeEEecCCce----------------EEEEEECC-CCCEEEEecCCCceEEEe
Confidence 4332455554 448899999986 332222221111 22788888 544444 68899999999
Q ss_pred cCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 427 CSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 427 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
....... .....+...+....+.+++..+++++.+..+++
T Consensus 399 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (466)
T COG2319 399 LSTGSLL-RNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRL 438 (466)
T ss_pred cccCeee-eeccCCCCcEEEEEECCCCcEEEEecCCCcEEE
Confidence 9876433 222222278888999999999999999999998
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.7e-15 Score=124.42 Aligned_cols=240 Identities=13% Similarity=0.096 Sum_probs=168.5
Q ss_pred ccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEE
Q 010256 233 DYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (514)
Q Consensus 233 ~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd 311 (514)
..+|+|.+|++|+..++.+ ....|.||.....+.-.. .+++..|...|+.|+|+|.. +.|++++.|+.-++|.
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~-----~htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEP-----AHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVWT 83 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCcee-----ceehhhhCcceeEEeecCCC-CceeEccCCCCccccc
Confidence 3789999999999999999 889999999885442211 14678899999999999998 8999999999999999
Q ss_pred cCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccc
Q 010256 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLC 390 (514)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 390 (514)
...+..-.. ...+..++...+++.|+|.+..+++|+. ..|.||-++.+..- =..-|-.
T Consensus 84 ~~~~~~Wkp-------------tlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdW--WVsKhik------ 142 (361)
T KOG1523|consen 84 QPSGGTWKP-------------TLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDW--WVSKHIK------ 142 (361)
T ss_pred cCCCCeecc-------------ceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccce--ehhhhhC------
Confidence 854432111 1224445678999999999999999877 88888887642110 0000000
Q ss_pred cccccCCc-cceeeEEEcCCCCEEEEEeCCCcEEEEecCCC-----------------ceeeeeecCCCcceeEEEECCC
Q 010256 391 DLYENDSI-FDKFECCLSGDGGRVATGSYSNLFRVFGCSEG-----------------SAESTTLEASKNPMRRQVQTPS 452 (514)
Q Consensus 391 ~~~~~~~~-~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-----------------~~~~~~~~~~~~~v~~~~~~~~ 452 (514)
..| ..|++++|+|++-+|++|+.|+..|||...-. .++...+....+.+..+.|+|+
T Consensus 143 -----kPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s 217 (361)
T KOG1523|consen 143 -----KPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS 217 (361)
T ss_pred -----CccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC
Confidence 000 02559999999999999999999999975311 0111223345678999999999
Q ss_pred CCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEec
Q 010256 453 RPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS 506 (514)
Q Consensus 453 ~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~ 506 (514)
|..|+-.+.|.++.+.+...+.+..... . ...-..+++.|-.+...++.|-+
T Consensus 218 G~~lawv~Hds~v~~~da~~p~~~v~~~-~-~~~lP~ls~~~ise~~vv~ag~~ 269 (361)
T KOG1523|consen 218 GNRLAWVGHDSTVSFVDAAGPSERVQSV-A-TAQLPLLSVSWISENSVVAAGYD 269 (361)
T ss_pred CCEeeEecCCCceEEeecCCCchhccch-h-hccCCceeeEeecCCceeecCCC
Confidence 9999999999999995444443111111 1 11255677777666555544444
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-15 Score=144.32 Aligned_cols=231 Identities=13% Similarity=0.149 Sum_probs=147.9
Q ss_pred CCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-c---CCeEEEEeccCCCceeeeeccCCCccc
Q 010256 204 VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D---DLRINLWNLEISNQSFNIVDVKPANME 279 (514)
Q Consensus 204 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~ 279 (514)
+..|.+|| ....+ .+. +..|...+...+|+|||+.|+.. . +..|++||+.+++... +. .+.
T Consensus 183 ~~~i~i~d-~dg~~-------~~~-lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~-----~~~ 247 (429)
T PRK01742 183 PYEVRVAD-YDGFN-------QFI-VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VA-----SFR 247 (429)
T ss_pred eEEEEEEC-CCCCC-------ceE-eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-Ee-----cCC
Confidence 46788877 32221 111 35667789999999999999876 3 2479999998654321 10 222
Q ss_pred ccCCceEEEEEecCCCcEEEEE-ecCCeEEEE--EcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEE
Q 010256 280 DLTEVITSAEFHPTHCNMLAYS-SSKGSIRLI--DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI 356 (514)
Q Consensus 280 ~~~~~i~~v~~~p~~~~~l~~~-~~dg~i~~w--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 356 (514)
++ ...++|+||| +.|+.+ +.+|.+.|| |+.++.. .. +..+...+....|+|||+.|
T Consensus 248 g~---~~~~~wSPDG-~~La~~~~~~g~~~Iy~~d~~~~~~-----~~------------lt~~~~~~~~~~wSpDG~~i 306 (429)
T PRK01742 248 GH---NGAPAFSPDG-SRLAFASSKDGVLNIYVMGANGGTP-----SQ------------LTSGAGNNTEPSWSPDGQSI 306 (429)
T ss_pred Cc---cCceeECCCC-CEEEEEEecCCcEEEEEEECCCCCe-----Ee------------eccCCCCcCCEEECCCCCEE
Confidence 22 3468999999 666655 468876665 5544432 11 22233567889999999988
Q ss_pred EEEeC--CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceee
Q 010256 357 LSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES 434 (514)
Q Consensus 357 ~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 434 (514)
+..++ +...||++...+.....+ .+.. ....|+|||++|+..+.++ +.+||+.++....
T Consensus 307 ~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~-----------------~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~ 367 (429)
T PRK01742 307 LFTSDRSGSPQVYRMSASGGGASLV-GGRG-----------------YSAQISADGKTLVMINGDN-VVKQDLTSGSTEV 367 (429)
T ss_pred EEEECCCCCceEEEEECCCCCeEEe-cCCC-----------------CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEE
Confidence 76543 788888876533333222 2211 1567999999998887754 6669998875432
Q ss_pred eeecCCCcceeEEEECCCCCceeecCCCCeEEEe-----eCCCCCccccCCcccccccceEEEEEcCCC
Q 010256 435 TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRV-----KGADNSALDANGNAFDFSMKLLHLAWHPSE 498 (514)
Q Consensus 435 ~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~-----~~~~~~~~~~~~~~~~~~~~v~~~~~spd~ 498 (514)
....+ ....+.|+|++++|++++.++..+++ +|.... .+ ..+.+.+..++|||--
T Consensus 368 -lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~--~l----~~~~g~~~~p~wsp~~ 427 (429)
T PRK01742 368 -LSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKA--RL----PGSDGQVKFPAWSPYL 427 (429)
T ss_pred -ecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceE--Ec----cCCCCCCCCcccCCCC
Confidence 11222 23567899999999999988877761 232221 12 2356778899999853
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.4e-14 Score=119.97 Aligned_cols=256 Identities=13% Similarity=0.159 Sum_probs=158.6
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccce
Q 010256 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (514)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (514)
-.+..++|++.-..+|++..|-.|++|+-..... ..++.-. +..|
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~p------------------------t~Lks~s-----------Qrnv 143 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCP------------------------TKLKSVS-----------QRNV 143 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCCCC------------------------ceecchh-----------hcce
Confidence 4577899999777789999999999999665221 1222211 2669
Q ss_pred eEEEEeeCCCCcEEEEeeCCCeEEEEEcCccE-EEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCC
Q 010256 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (514)
Q Consensus 116 ~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (514)
++++|-|-.. ..|+.|+. +-|.+|.....- ....
T Consensus 144 tclawRPlsa-selavgCr-~gIciW~~s~tln~~r~------------------------------------------- 178 (445)
T KOG2139|consen 144 TCLAWRPLSA-SELAVGCR-AGICIWSDSRTLNANRN------------------------------------------- 178 (445)
T ss_pred eEEEeccCCc-ceeeeeec-ceeEEEEcCcccccccc-------------------------------------------
Confidence 9999976443 35666655 678999765321 0000
Q ss_pred CCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeec
Q 010256 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVD 272 (514)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~ 272 (514)
..+.......+.. -.+| .+|+++.|++||..++++ .|..|.|||..++.... +
T Consensus 179 ----~~~~s~~~~qvl~-----------------~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~p-L-- 233 (445)
T KOG2139|consen 179 ----IRMMSTHHLQVLQ-----------------DPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIP-L-- 233 (445)
T ss_pred ----cccccccchhhee-----------------CCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccc-c--
Confidence 0000111111100 1455 689999999999999998 79999999999765432 1
Q ss_pred cCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecC
Q 010256 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (514)
Q Consensus 273 ~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 352 (514)
+ ....+.+.-+.|+||+ .+|..++-|+..++|+........+ +.. ..+.|....|+|+
T Consensus 234 -~----~~glgg~slLkwSPdg-d~lfaAt~davfrlw~e~q~wt~er----w~l------------gsgrvqtacWspc 291 (445)
T KOG2139|consen 234 -I----PKGLGGFSLLKWSPDG-DVLFAATCDAVFRLWQENQSWTKER----WIL------------GSGRVQTACWSPC 291 (445)
T ss_pred -c----ccCCCceeeEEEcCCC-CEEEEecccceeeeehhcccceecc----eec------------cCCceeeeeecCC
Confidence 1 1235678899999999 8999999999999997654322111 111 1147999999999
Q ss_pred CCEEEEEeCCeEEEEEccCCCCceeeeeecccc--ccccccccccC-------CccceeeEEEcCCCCEEEEEeCC
Q 010256 353 GRHILSRDYMTLKLWDINMDSGPVATFQVHEHL--RPKLCDLYEND-------SIFDKFECCLSGDGGRVATGSYS 419 (514)
Q Consensus 353 g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~s~~~d 419 (514)
|++|+....+.-++|.+..+++...... .... ...+.++.... .-.+..+++|.|.|++||+.-..
T Consensus 292 GsfLLf~~sgsp~lysl~f~~~~~~~~~-~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 292 GSFLLFACSGSPRLYSLTFDGEDSVFLR-PQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred CCEEEEEEcCCceEEEEeecCCCccccC-cccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 9999877666667777765333222110 0000 00011111100 00123489999999999976543
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.7e-15 Score=125.48 Aligned_cols=266 Identities=10% Similarity=0.133 Sum_probs=165.5
Q ss_pred cccccccceEEEEEcC--CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccc
Q 010256 30 EEVQEVDIISAIEFDK--SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (514)
Q Consensus 30 ~~~~h~~~V~~~~~s~--~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (514)
+..+|...++.++|.. ....+.+++.||+|++||+...... ....+.+|.+
T Consensus 65 ~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~---------------------a~~~~~~~~~------ 117 (376)
T KOG1188|consen 65 EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES---------------------ARISWTQQSG------ 117 (376)
T ss_pred eecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh---------------------hheeccCCCC------
Confidence 4567888899999987 4568999999999999999776543 1122333321
Q ss_pred ccccccceeEEEEeeCCCCcEEEEee----CCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCC
Q 010256 108 SLEIEEKINKIRWCQSANSALYLLST----NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183 (514)
Q Consensus 108 ~~~~~~~v~~i~~~~~~~~~~l~s~~----~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 183 (514)
.+..+++- ..++..+++|+ .|-.|.+||++..+.
T Consensus 118 -----~~f~~ld~--nck~~ii~~GtE~~~s~A~v~lwDvR~~qq----------------------------------- 155 (376)
T KOG1188|consen 118 -----TPFICLDL--NCKKNIIACGTELTRSDASVVLWDVRSEQQ----------------------------------- 155 (376)
T ss_pred -----CcceEeec--cCcCCeEEeccccccCceEEEEEEeccccc-----------------------------------
Confidence 34555554 33555666663 456777888775431
Q ss_pred CccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC-CCEEEEe-cCCeEEEEec
Q 010256 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNL 261 (514)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~ 261 (514)
.++.+...|.+.|+++.|+|. .++|++| .||.|.+||+
T Consensus 156 ----------------------------------------~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 156 ----------------------------------------LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred ----------------------------------------hhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence 122234789999999999996 6788899 8999999999
Q ss_pred cCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccc
Q 010256 262 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 341 (514)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (514)
+.....-.+. +.-.+...|.++.|..++-..|.+-+......+|+++.+... ..++.+........-....
T Consensus 196 ~~d~EeDaL~-----~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~----~~~~~~~~~~~d~r~~~~~ 266 (376)
T KOG1188|consen 196 KKDNEEDALL-----HVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEE----TWLENPDVSADDLRKEDNC 266 (376)
T ss_pred CCCcchhhHH-----HhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChh----hcccCccchhhhHHhhhhh
Confidence 8543321111 223467789999999887557888999999999999987742 1111110000000000000
Q ss_pred cceeEEEEecCCCEEEE-EeC-CeEEEEEccC--C---CCceeeeee-ccccccccccccccCCccceeeEEEcCCCCEE
Q 010256 342 ASISDIKFARNGRHILS-RDY-MTLKLWDINM--D---SGPVATFQV-HEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 413 (514)
Q Consensus 342 ~~i~~~~~s~~g~~l~~-~~~-~~i~iwd~~~--~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 413 (514)
..+-......+...++. |.+ +...++-+.. . .+.+..+.+ |...+. ++.|...+.++
T Consensus 267 dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR---------------~i~~~~~~~~l 331 (376)
T KOG1188|consen 267 DYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVR---------------DILFDVKNDVL 331 (376)
T ss_pred hheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHH---------------HHhhhccccee
Confidence 11111111223444444 454 5555554441 1 233444554 333322 67788888999
Q ss_pred EEEeCCCcEEEEecC
Q 010256 414 ATGSYSNLFRVFGCS 428 (514)
Q Consensus 414 ~s~~~dg~i~iwd~~ 428 (514)
.||+.||.+.+|..+
T Consensus 332 ~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 332 YTGGEDGLLQAWKVE 346 (376)
T ss_pred eccCCCceEEEEecC
Confidence 999999999999964
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-14 Score=142.26 Aligned_cols=292 Identities=12% Similarity=0.149 Sum_probs=163.1
Q ss_pred ccccccchhhccccCcccccccccceEEEEEcCCC-CeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccce
Q 010256 13 QPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR 91 (514)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g-~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (514)
++..|++.-.+ -.+...|...|..++.++.. .+++||+.||+|++|+...-... + ...+
T Consensus 1030 p~~gW~p~G~l----VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~----------~------~s~r 1089 (1431)
T KOG1240|consen 1030 PPPGWNPRGIL----VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE----------G------GSAR 1089 (1431)
T ss_pred CCCCCCccceE----eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcC----------c------ceee
Confidence 34557665532 12455788999999988755 99999999999999997633211 0 0011
Q ss_pred eeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceeccc
Q 010256 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (514)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (514)
...++..- ...+.++.+++ ++..+|.++.||.|++.++...+.................+.+..+
T Consensus 1090 S~ltys~~------------~sr~~~vt~~~--~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m- 1154 (1431)
T KOG1240|consen 1090 SELTYSPE------------GSRVEKVTMCG--NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSM- 1154 (1431)
T ss_pred eeEEEecc------------CCceEEEEecc--CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEe-
Confidence 11111111 26788888865 4558999999999999998763211110000000000001111110
Q ss_pred ccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe
Q 010256 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 251 (514)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 251 (514)
.++....+ + ..++.+...+.|..||+....+. ... . .....+.|++++.+|.+++++.|
T Consensus 1155 -----~a~~~~~~---------S-~~lvy~T~~~~iv~~D~r~~~~~----w~l-k-~~~~hG~vTSi~idp~~~WlviG 1213 (1431)
T KOG1240|consen 1155 -----HAFTAIVQ---------S-HVLVYATDLSRIVSWDTRMRHDA----WRL-K-NQLRHGLVTSIVIDPWCNWLVIG 1213 (1431)
T ss_pred -----eccccccc---------c-eeEEEEEeccceEEecchhhhhH----Hhh-h-cCccccceeEEEecCCceEEEEe
Confidence 01111111 0 13366777788888883211111 000 1 13345789999999999999999
Q ss_pred -cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCC--cEEEEEe--cCCeEEEEEcCCCcccccccccee
Q 010256 252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC--NMLAYSS--SKGSIRLIDMRQSALCDTHSKLFE 326 (514)
Q Consensus 252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~--~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~ 326 (514)
..|.+.+||++=+ ..+..+ . ..+..+++.+..+|..+ ...++++ ..+.|.+|++.+|... +++.
T Consensus 1214 ts~G~l~lWDLRF~-~~i~sw-----~-~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~----~vl~ 1282 (1431)
T KOG1240|consen 1214 TSRGQLVLWDLRFR-VPILSW-----E-HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQ----TVLW 1282 (1431)
T ss_pred cCCceEEEEEeecC-ceeecc-----c-CcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcce----EEEE
Confidence 9999999999843 333221 1 22457788888776543 4444444 4788999999998542 2222
Q ss_pred cc-CCCCccceee------ccccceeEEEEecCCCEEEE-EeCCeEEEEEccC
Q 010256 327 EQ-EAPGTRSFFT------EIIASISDIKFARNGRHILS-RDYMTLKLWDINM 371 (514)
Q Consensus 327 ~~-~~~~~~~~~~------~~~~~i~~~~~s~~g~~l~~-~~~~~i~iwd~~~ 371 (514)
.. ..+....... .+.-......+...+.++.+ |+|..|+.||...
T Consensus 1283 ~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1283 ASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred cCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 21 1111000000 11112222333333445555 5679999999875
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-14 Score=121.10 Aligned_cols=231 Identities=13% Similarity=0.185 Sum_probs=161.1
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccc
Q 010256 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (514)
..+|+|.+|++|+..+|.+.....|.||...... -+....++..|+ ..
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~--------------------~w~~~htls~Hd------------~~ 57 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD--------------------LWEPAHTLSEHD------------KI 57 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCC--------------------CceeceehhhhC------------cc
Confidence 4689999999999999999999999999987654 133567788888 88
Q ss_pred eeEEEEeeCCCCcEEEEeeCCCeEEEEEc-CccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCC
Q 010256 115 INKIRWCQSANSALYLLSTNDKTIKLWKV-QEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (514)
Q Consensus 115 v~~i~~~~~~~~~~l~s~~~d~~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (514)
|+.|+|.|. ...|++++.|+.-.+|.. ..++.+..+.
T Consensus 58 vtgvdWap~--snrIvtcs~drnayVw~~~~~~~Wkptlv---------------------------------------- 95 (361)
T KOG1523|consen 58 VTGVDWAPK--SNRIVTCSHDRNAYVWTQPSGGTWKPTLV---------------------------------------- 95 (361)
T ss_pred eeEEeecCC--CCceeEccCCCCccccccCCCCeecccee----------------------------------------
Confidence 999999654 448999999999999988 4443322211
Q ss_pred CCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeec
Q 010256 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (514)
Q Consensus 194 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~ 272 (514)
+..+....+++.|+|.++.|++| ....|.+|-.+..+. .-.
T Consensus 96 -----------------------------------LlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENd-WWV-- 137 (361)
T KOG1523|consen 96 -----------------------------------LLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEND-WWV-- 137 (361)
T ss_pred -----------------------------------EEEeccceeeEeecCcCceEEeccCccEEEEEEEecccc-eeh--
Confidence 24456778999999999999999 788999998874332 110
Q ss_pred cCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCc--cceeeccccceeEEEEe
Q 010256 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT--RSFFTEIIASISDIKFA 350 (514)
Q Consensus 273 ~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~s 350 (514)
..+.-..+...|++++|+|++ -+++.|+.|+..|+|...-...-.++...--+.+.|.- ...+....+.+..+.|+
T Consensus 138 -sKhikkPirStv~sldWhpnn-VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs 215 (361)
T KOG1523|consen 138 -SKHIKKPIRSTVTSLDWHPNN-VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFS 215 (361)
T ss_pred -hhhhCCccccceeeeeccCCc-ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeC
Confidence 000123357889999999998 89999999999999975422211110000000000000 00112344789999999
Q ss_pred cCCCEEEE-EeCCeEEEEEccCCCCceeee
Q 010256 351 RNGRHILS-RDYMTLKLWDINMDSGPVATF 379 (514)
Q Consensus 351 ~~g~~l~~-~~~~~i~iwd~~~~~~~~~~~ 379 (514)
|+|..|+- +.|.++.+-|...+.+.+.++
T Consensus 216 ~sG~~lawv~Hds~v~~~da~~p~~~v~~~ 245 (361)
T KOG1523|consen 216 PSGNRLAWVGHDSTVSFVDAAGPSERVQSV 245 (361)
T ss_pred CCCCEeeEecCCCceEEeecCCCchhccch
Confidence 99999986 677999998887543333333
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-16 Score=148.85 Aligned_cols=252 Identities=16% Similarity=0.169 Sum_probs=172.4
Q ss_pred cccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010256 229 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 307 (514)
Q Consensus 229 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i 307 (514)
+.+|...|+|+.|...|.++++| +|..++||.+++.... ..+.+|.+.|+.++.+.+. .++++++.|..|
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~l--------As~rGhs~ditdlavs~~n-~~iaaaS~D~vI 256 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCL--------ASCRGHSGDITDLAVSSNN-TMIAAASNDKVI 256 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhh--------ccCCCCccccchhccchhh-hhhhhcccCceE
Confidence 37899999999999999999999 9999999998866544 3678999999999999887 899999999999
Q ss_pred EEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCC-------------C
Q 010256 308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDS-------------G 374 (514)
Q Consensus 308 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~-------------~ 374 (514)
++|.+..+..+ ..+.+|++.|++++|+|-. .++.||++++||.+-.- .
T Consensus 257 rvWrl~~~~pv----------------svLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~~y~prp~~~~~~~ 317 (1113)
T KOG0644|consen 257 RVWRLPDGAPV----------------SVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPRPLKFTEKD 317 (1113)
T ss_pred EEEecCCCchH----------------HHHhccccceeeeccCccc---cCCCCCceEeccccccccccCCCCCCccccc
Confidence 99999988763 4477888999999999975 44556999999987200 0
Q ss_pred ceeeeeeccccccccccc-cccCCccceeeEEEcCCC-----------CEEEEEeCCCcEEEEecCCCceeeeeecCCCc
Q 010256 375 PVATFQVHEHLRPKLCDL-YENDSIFDKFECCLSGDG-----------GRVATGSYSNLFRVFGCSEGSAESTTLEASKN 442 (514)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~-----------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 442 (514)
.+..+............- ......+....++|..++ .+.+++-.+-.+.+|++.++ .+.+.+.+|..
T Consensus 318 ~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g-~l~H~l~ghsd 396 (1113)
T KOG0644|consen 318 LVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG-QLLHNLMGHSD 396 (1113)
T ss_pred ceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccc-hhhhhhccccc
Confidence 111111100000000000 000000111122333222 23444555677899999988 55588999999
Q ss_pred ceeEEEECCCCC-ceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEe-cCcEEEE
Q 010256 443 PMRRQVQTPSRP-SRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMY 512 (514)
Q Consensus 443 ~v~~~~~~~~~~-~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~~i~ 512 (514)
.++.+.++|-.. ...+++.||...|.+-|.-.. +.....+ ...+..-+||+||..+++.. -+.++|+
T Consensus 397 ~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~p--ik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 397 EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP--IKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred ceeeeeecCCCcHhhhhccCCCceEeeecccCCc--ceeeecc-cceeeccccCCCCceEecCCCCCceEEe
Confidence 999999998665 557889999999933332221 1111122 45566779999999998665 5555554
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.6e-14 Score=112.09 Aligned_cols=247 Identities=12% Similarity=0.126 Sum_probs=157.1
Q ss_pred ceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeecccccc---ccccccccccccCccCeEEEEECCCCCEEEEec
Q 010256 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETN---LVAGCRRIYAHAHDYHINSISNNSDGETFISAD 252 (514)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 252 (514)
.-+++|.++++ +.+..+|.|.+.. +...... ...+.......+|.++|+.++|. ...|++|.
T Consensus 15 ~qa~sp~~~~l------------~agn~~G~iav~s-l~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g 79 (325)
T KOG0649|consen 15 AQAISPSKQYL------------FAGNLFGDIAVLS-LKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG 79 (325)
T ss_pred HHhhCCcceEE------------EEecCCCeEEEEE-ehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc
Confidence 44678888887 9999999999988 4443322 11121222227999999999998 55788887
Q ss_pred CCeEEEEeccCCCc---eeeeeccCCCccc--ccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceec
Q 010256 253 DLRINLWNLEISNQ---SFNIVDVKPANME--DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 327 (514)
Q Consensus 253 d~~i~iwd~~~~~~---~~~~~~~~~~~~~--~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 327 (514)
||.|+-|..+...+ +.+++..+++... ..--.|+++-..|.. +-++.++.|+.++-||+++|+..
T Consensus 80 dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e-nSi~~AgGD~~~y~~dlE~G~i~--------- 149 (325)
T KOG0649|consen 80 DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE-NSILFAGGDGVIYQVDLEDGRIQ--------- 149 (325)
T ss_pred CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC-CcEEEecCCeEEEEEEecCCEEE---------
Confidence 89999998764432 1222222221111 123457889999988 56666779999999999999862
Q ss_pred cCCCCccceeeccccceeEEEEe-cCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEE
Q 010256 328 QEAPGTRSFFTEIIASISDIKFA-RNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 406 (514)
Q Consensus 328 ~~~~~~~~~~~~~~~~i~~~~~s-~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 406 (514)
..+.+|+..|.++.-- .+++.|-.+.||++|+||.++ ++.+..+........ +. ..+. .+-.+.
T Consensus 150 -------r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt-~k~v~~ie~yk~~~~-lR-p~~g-----~wigal 214 (325)
T KOG0649|consen 150 -------REYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKT-QKHVSMIEPYKNPNL-LR-PDWG-----KWIGAL 214 (325)
T ss_pred -------EEEcCCcceeeeeeecccCcceeecCCCccEEEEeccc-cceeEEeccccChhh-cC-cccC-----ceeEEE
Confidence 3467788899999884 445444445679999999998 888877765443210 00 0000 112344
Q ss_pred cCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 407 SGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 407 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.-+..+|+.|+. ..+.+|++.+.++. +++ .-..++..+.|-. ..++++++-+.|.-
T Consensus 215 a~~edWlvCGgG-p~lslwhLrsse~t-~vf-pipa~v~~v~F~~--d~vl~~G~g~~v~~ 270 (325)
T KOG0649|consen 215 AVNEDWLVCGGG-PKLSLWHLRSSEST-CVF-PIPARVHLVDFVD--DCVLIGGEGNHVQS 270 (325)
T ss_pred eccCceEEecCC-CceeEEeccCCCce-EEE-ecccceeEeeeec--ceEEEeccccceee
Confidence 456678877654 67999999976443 222 2234455555543 35566665544444
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.1e-14 Score=119.60 Aligned_cols=244 Identities=11% Similarity=0.129 Sum_probs=156.0
Q ss_pred cCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEc
Q 010256 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~ 312 (514)
..+..++|++.-..++++ .|-.|++|+-.. .....+ -......|++++|-|.+...|+.|+.. -|.+|..
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~L-------ks~sQrnvtclawRPlsaselavgCr~-gIciW~~ 169 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKL-------KSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSD 169 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCcee-------cchhhcceeEEEeccCCcceeeeeecc-eeEEEEc
Confidence 457889999987778888 899999999874 222111 112356799999999987888888875 5789987
Q ss_pred CCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe--CCeEEEEEccCCCCceeee-eecccccccc
Q 010256 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVATF-QVHEHLRPKL 389 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~~~i~iwd~~~~~~~~~~~-~~~~~~~~~~ 389 (514)
.........++....+ ........+| .+|++++|.+||..+++++ +..|.|||..+ +..+... .+..+
T Consensus 170 s~tln~~r~~~~~s~~--~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt-g~~~pL~~~glgg----- 240 (445)
T KOG2139|consen 170 SRTLNANRNIRMMSTH--HLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDT-GQKIPLIPKGLGG----- 240 (445)
T ss_pred Cccccccccccccccc--chhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCC-CCcccccccCCCc-----
Confidence 5433222212211111 1111223345 6899999999999999975 48999999997 4433322 22211
Q ss_pred ccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeec-CCCCeEEE-
Q 010256 390 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG-SLSGVVRR- 467 (514)
Q Consensus 390 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-s~d~~v~i- 467 (514)
+.-+.|||||.+|++++-|+..++|+....... ....-..+.|...+|+|+|++|+.. +..-.++-
T Consensus 241 -----------~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~-erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl 308 (445)
T KOG2139|consen 241 -----------FSLLKWSPDGDVLFAATCDAVFRLWQENQSWTK-ERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSL 308 (445)
T ss_pred -----------eeeEEEcCCCCEEEEecccceeeeehhccccee-cceeccCCceeeeeecCCCCEEEEEEcCCceEEEE
Confidence 226899999999999999999999965432111 2222334489999999999976544 33333332
Q ss_pred -eeCCCCC--------ccccCCccc---------ccccceEEEEEcCCCCEEEEEecC
Q 010256 468 -VKGADNS--------ALDANGNAF---------DFSMKLLHLAWHPSENSIACAASN 507 (514)
Q Consensus 468 -~~~~~~~--------~~~~~~~~~---------~~~~~v~~~~~spd~~~l~~~~~~ 507 (514)
..+.... ...+..+.. --.+.+.+++|.|.|.+||+.-..
T Consensus 309 ~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 309 TFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred eecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 1111111 000111111 125788999999999999987644
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-12 Score=108.79 Aligned_cols=162 Identities=10% Similarity=0.207 Sum_probs=113.7
Q ss_pred ccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEE-EecCCeEEEEE
Q 010256 233 DYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY-SSSKGSIRLID 311 (514)
Q Consensus 233 ~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~-~~~dg~i~~wd 311 (514)
..+|.++.+.++ .|++.-++.|++|...+.-+....++.. . ....+.+++-+... .+||. |-.-|.|.|-|
T Consensus 94 ~~~I~~V~l~r~--riVvvl~~~I~VytF~~n~k~l~~~et~----~-NPkGlC~~~~~~~k-~~LafPg~k~GqvQi~d 165 (346)
T KOG2111|consen 94 NSEIKAVKLRRD--RIVVVLENKIYVYTFPDNPKLLHVIETR----S-NPKGLCSLCPTSNK-SLLAFPGFKTGQVQIVD 165 (346)
T ss_pred ccceeeEEEcCC--eEEEEecCeEEEEEcCCChhheeeeecc----c-CCCceEeecCCCCc-eEEEcCCCccceEEEEE
Confidence 367888888654 5777778899999987443333322211 1 11223333322222 34444 33468999999
Q ss_pred cCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-C-eEEEEEccCCCCceeeeeecccccccc
Q 010256 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-M-TLKLWDINMDSGPVATFQVHEHLRPKL 389 (514)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~-~i~iwd~~~~~~~~~~~~~~~~~~~~~ 389 (514)
+.....- +..++.+|.+.|.+++.+.+|..+|+++. | -|||||..+ +..+..+.......
T Consensus 166 L~~~~~~--------------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~-g~~l~E~RRG~d~A--- 227 (346)
T KOG2111|consen 166 LASTKPN--------------APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED-GTLLQELRRGVDRA--- 227 (346)
T ss_pred hhhcCcC--------------CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC-CcEeeeeecCCchh---
Confidence 8764421 23457788999999999999999999876 5 579999998 88888876554331
Q ss_pred ccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 390 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 390 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
++++++|||++.+||++|+.|+++||.+...
T Consensus 228 ----------~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 228 ----------DIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred ----------eEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 2559999999999999999999999998754
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-15 Score=133.00 Aligned_cols=268 Identities=13% Similarity=0.140 Sum_probs=191.6
Q ss_pred eeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCC
Q 010256 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (514)
Q Consensus 115 v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (514)
-..+.+ +.+|++++.++..|.|-.+|..++++...+...
T Consensus 132 PY~~~y--trnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~--------------------------------------- 170 (545)
T KOG1272|consen 132 PYHLDY--TRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM--------------------------------------- 170 (545)
T ss_pred Ceeeee--cCCccEEEecCCccceeeeecccceeeeeeehh---------------------------------------
Confidence 355666 678889999999999999998887755433322
Q ss_pred CCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccC
Q 010256 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVK 274 (514)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~ 274 (514)
..|.++.|-.+.+++|++....+++||-. +.....+
T Consensus 171 ---------------------------------------Etv~Dv~~LHneq~~AVAQK~y~yvYD~~-GtElHCl---- 206 (545)
T KOG1272|consen 171 ---------------------------------------ETVRDVTFLHNEQFFAVAQKKYVYVYDNN-GTELHCL---- 206 (545)
T ss_pred ---------------------------------------hhhhhhhhhcchHHHHhhhhceEEEecCC-CcEEeeh----
Confidence 34667888888889999988999999976 4333222
Q ss_pred CCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCC
Q 010256 275 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR 354 (514)
Q Consensus 275 ~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 354 (514)
. ....|..+.|.|.. -+|++++..|.++.-|+.+|+++.. +.. ..+.+..+.-+|-..
T Consensus 207 ----k-~~~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~----~~t------------~~G~~~vm~qNP~Na 264 (545)
T KOG1272|consen 207 ----K-RHIRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVAS----IRT------------GAGRTDVMKQNPYNA 264 (545)
T ss_pred ----h-hcCchhhhcccchh-heeeecccCCceEEEeechhhhhHH----HHc------------cCCccchhhcCCccc
Confidence 2 34678999999998 8999999999999999999987532 221 225677788888887
Q ss_pred EEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCcee
Q 010256 355 HILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 355 ~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
.+-.|.. |+|.+|.... ..++..+..|.+.+. ++++.++|+|++|.+.|..++|||+.....+
T Consensus 265 Vih~GhsnGtVSlWSP~s-kePLvKiLcH~g~V~---------------siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql 328 (545)
T KOG1272|consen 265 VIHLGHSNGTVSLWSPNS-KEPLVKILCHRGPVS---------------SIAVDRGGRYMATTGLDRKVKIWDLRNFYQL 328 (545)
T ss_pred eEEEcCCCceEEecCCCC-cchHHHHHhcCCCcc---------------eEEECCCCcEEeecccccceeEeeecccccc
Confidence 8888855 9999999997 888888888887754 9999999999999999999999999976433
Q ss_pred eeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCccc--ccccceEEEEEcCCCCEEEEEecCcE
Q 010256 434 STTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAF--DFSMKLLHLAWHPSENSIACAASNSL 509 (514)
Q Consensus 434 ~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~--~~~~~v~~~~~spd~~~l~~~~~~~~ 509 (514)
.++.. ..+...+.+|.. -++..|....|.++.+..-...-....++ ...+.|..+.|.|-...|-+|...++
T Consensus 329 -~t~~t-p~~a~~ls~Sqk--glLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~ 402 (545)
T KOG1272|consen 329 -HTYRT-PHPASNLSLSQK--GLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGI 402 (545)
T ss_pred -ceeec-CCCccccccccc--cceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCc
Confidence 33332 234455666544 34444455667772111110000111112 23568999999999998888775543
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-13 Score=124.02 Aligned_cols=289 Identities=17% Similarity=0.244 Sum_probs=182.4
Q ss_pred cccccccceEEEEEcCCCCe-EEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccc
Q 010256 30 EEVQEVDIISAIEFDKSGDH-LATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (514)
Q Consensus 30 ~~~~h~~~V~~~~~s~~g~~-l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (514)
.++.+...-+.|..+|||+| ||||...-.|++||+..-.. .|.-|-..
T Consensus 46 Qdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL-------------------------KFERhlDa------ 94 (703)
T KOG2321|consen 46 QDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL-------------------------KFERHLDA------ 94 (703)
T ss_pred HhcCCccccceeEecCCCcEEEEecccCCceEEEEccccee-------------------------eeeecccc------
Confidence 46789999999999999997 56777889999999874432 23333210
Q ss_pred cccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEE-EeeccCCCccccCCcceecccccCCceeeccCCCccc
Q 010256 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKK-VFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (514)
Q Consensus 109 ~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 187 (514)
+.|.-.-. +.|-..++.-..|++|.+.......... +..+. ..++++.
T Consensus 95 ----e~V~feiL--sDD~SK~v~L~~DR~IefHak~G~hy~~RIP~~G-------------------RDm~y~~------ 143 (703)
T KOG2321|consen 95 ----EVVDFEIL--SDDYSKSVFLQNDRTIEFHAKYGRHYRTRIPKFG-------------------RDMKYHK------ 143 (703)
T ss_pred ----cceeEEEe--ccchhhheEeecCceeeehhhcCeeeeeecCcCC-------------------ccccccC------
Confidence 22332222 3443445555667777665432221110 00000 0112211
Q ss_pred cccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCc
Q 010256 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 266 (514)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~ 266 (514)
.+.++++.|+.. .|.-++ .+. +..+..+ ....+.++++..++-..+|++| .+|.|-+||.++...
T Consensus 144 -----~scDly~~gsg~-evYRlN----LEq---GrfL~P~-~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksr 209 (703)
T KOG2321|consen 144 -----PSCDLYLVGSGS-EVYRLN----LEQ---GRFLNPF-ETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSR 209 (703)
T ss_pred -----CCccEEEeecCc-ceEEEE----ccc---ccccccc-ccccccceeeeecCccceEEecccCceEEEecchhhhh
Confidence 112222333333 333223 111 1122222 3445789999999999999999 899999999996554
Q ss_pred eeeeeccCCCcccccC-----CceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccc
Q 010256 267 SFNIVDVKPANMEDLT-----EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 341 (514)
Q Consensus 267 ~~~~~~~~~~~~~~~~-----~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (514)
+- .++... +...|. ..|+++.|+.+| -.+++|+.+|.+.|||+++.+.... +.| +..
T Consensus 210 v~-~l~~~~-~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~~pl~~-----kdh----------~~e 271 (703)
T KOG2321|consen 210 VG-TLDAAS-SVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRASKPLLV-----KDH----------GYE 271 (703)
T ss_pred he-eeeccc-ccCCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccCCceee-----ccc----------CCc
Confidence 33 222211 122233 349999999998 8999999999999999999775311 111 112
Q ss_pred cceeEEEEecC--CCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCC
Q 010256 342 ASISDIKFARN--GRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 419 (514)
Q Consensus 342 ~~i~~~~~s~~--g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 419 (514)
-+|..+.|.+. +..+++.+...++|||-.+ +++...+...... ..+|+-|++.+++++-.+
T Consensus 272 ~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~-Gk~~asiEpt~~l----------------ND~C~~p~sGm~f~Ane~ 334 (703)
T KOG2321|consen 272 LPIKKLDWQDTDQQNKVVSMDKRILKIWDECT-GKPMASIEPTSDL----------------NDFCFVPGSGMFFTANES 334 (703)
T ss_pred cceeeecccccCCCceEEecchHHhhhccccc-CCceeeccccCCc----------------CceeeecCCceEEEecCC
Confidence 47888999774 5677777779999999997 8887776544432 278999999999999998
Q ss_pred CcEEEEecCC
Q 010256 420 NLFRVFGCSE 429 (514)
Q Consensus 420 g~i~iwd~~~ 429 (514)
+.+..|=+..
T Consensus 335 ~~m~~yyiP~ 344 (703)
T KOG2321|consen 335 SKMHTYYIPS 344 (703)
T ss_pred CcceeEEccc
Confidence 8887776654
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.1e-13 Score=116.33 Aligned_cols=231 Identities=15% Similarity=0.199 Sum_probs=154.9
Q ss_pred cCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC--CeEEEE
Q 010256 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--GSIRLI 310 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d--g~i~~w 310 (514)
..+..+.|+.+...|..| .|| .++|..+...+... .......|..+-|+.. ++|..+.+ +.++++
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~--------~~~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~ 73 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFS--------KDTEGVSIVEMLFSSS---LVAIVSIKQPRKLKVV 73 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchHHhhc--------ccCCCeEEEEeecccc---eeEEEecCCCceEEEE
Confidence 456777799999999999 555 57787764444321 1223444556667653 55555543 458888
Q ss_pred EcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccc
Q 010256 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLC 390 (514)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 390 (514)
+++.+..+.. ..| ..+|.+|.++.+ .|++.-...|+|||++. .+.++++..-......
T Consensus 74 ~~Kk~~~ICe--~~f---------------pt~IL~VrmNr~--RLvV~Lee~IyIydI~~-MklLhTI~t~~~n~~g-- 131 (391)
T KOG2110|consen 74 HFKKKTTICE--IFF---------------PTSILAVRMNRK--RLVVCLEESIYIYDIKD-MKLLHTIETTPPNPKG-- 131 (391)
T ss_pred EcccCceEEE--Eec---------------CCceEEEEEccc--eEEEEEcccEEEEeccc-ceeehhhhccCCCccc--
Confidence 8876654311 111 146888888743 45554444599999997 8888887654222111
Q ss_pred cccccCCccceeeEEEcCCCCEEEEE--eCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE-
Q 010256 391 DLYENDSIFDKFECCLSGDGGRVATG--SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR- 467 (514)
Q Consensus 391 ~~~~~~~~~~v~~~~~s~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i- 467 (514)
+.++++++++.|||.- ...|.|.|||+.+-+ ...++..|.+++.+++|+++|.+||++|+.|+|-.
T Consensus 132 ----------l~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~-~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRV 200 (391)
T KOG2110|consen 132 ----------LCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ-PVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRV 200 (391)
T ss_pred ----------eEeeccCCCCceEEecCCCCCceEEEEEcccce-eeeEEEecCCceeEEEECCCCCEEEEeccCceEEEE
Confidence 2255555666788843 356899999998764 34788899999999999999999999999998765
Q ss_pred ---eeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 468 ---VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 468 ---~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
-+|.++. ++..-. ....|.+++|+||+.+|++.+ .+.+-+|.
T Consensus 201 f~v~~G~kl~--eFRRG~--~~~~IySL~Fs~ds~~L~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 201 FSVPEGQKLY--EFRRGT--YPVSIYSLSFSPDSQFLAASSNTETVHIFK 246 (391)
T ss_pred EEcCCccEee--eeeCCc--eeeEEEEEEECCCCCeEEEecCCCeEEEEE
Confidence 2333333 222111 256899999999999999776 56666663
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.4e-14 Score=131.67 Aligned_cols=216 Identities=13% Similarity=0.143 Sum_probs=135.4
Q ss_pred cCccCeEEEEECCCCCEEEEe----cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEE-EecCC
Q 010256 231 AHDYHINSISNNSDGETFISA----DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY-SSSKG 305 (514)
Q Consensus 231 ~h~~~v~~~~~~~~~~~l~s~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~-~~~dg 305 (514)
.+...+...+|+|||+.|+.. .+..|.+|++.+++.. .+ ......+..+.|+||| +.|+. .+.+|
T Consensus 196 ~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~l--------~~~~~~~~~~~~SPDG-~~La~~~~~~g 265 (429)
T PRK03629 196 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QV--------ASFPRHNGAPAFSPDG-SKLAFALSKTG 265 (429)
T ss_pred cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-Ec--------cCCCCCcCCeEECCCC-CEEEEEEcCCC
Confidence 455678999999999998864 2457999999855422 11 1122334568999999 55554 45455
Q ss_pred --eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC--CeEEEEEccCCCCceeeeee
Q 010256 306 --SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQV 381 (514)
Q Consensus 306 --~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~~~~~~~~~~~ 381 (514)
.|.+||+.++... .+ ..+...+....|+|||+.|+..++ +...||.+...+.....+..
T Consensus 266 ~~~I~~~d~~tg~~~-----~l------------t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~ 328 (429)
T PRK03629 266 SLNLYVMDLASGQIR-----QV------------TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITW 328 (429)
T ss_pred CcEEEEEECCCCCEE-----Ec------------cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeec
Confidence 5888999876531 11 111235678999999998887543 44555544322333333332
Q ss_pred ccccccccccccccCCccceeeEEEcCCCCEEEEEeCC---CcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceee
Q 010256 382 HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPL 458 (514)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 458 (514)
.... ....+|+|||++|+..+.+ ..|++||+.++... .+... .......|+|||++|+.
T Consensus 329 ~~~~---------------~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~--~Lt~~-~~~~~p~~SpDG~~i~~ 390 (429)
T PRK03629 329 EGSQ---------------NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ--VLTDT-FLDETPSIAPNGTMVIY 390 (429)
T ss_pred CCCC---------------ccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE--EeCCC-CCCCCceECCCCCEEEE
Confidence 2211 1168899999998876543 35888999877433 23221 12346789999999999
Q ss_pred cCCCCeEE---E--eeCCCCCccccCCcccccccceEEEEEcCC
Q 010256 459 GSLSGVVR---R--VKGADNSALDANGNAFDFSMKLLHLAWHPS 497 (514)
Q Consensus 459 ~s~d~~v~---i--~~~~~~~~~~~~~~~~~~~~~v~~~~~spd 497 (514)
++.++... + .+|.... .+ ..+.+.+...+|+|-
T Consensus 391 ~s~~~~~~~l~~~~~~G~~~~--~l----~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 391 SSSQGMGSVLNLVSTDGRFKA--RL----PATDGQVKFPAWSPY 428 (429)
T ss_pred EEcCCCceEEEEEECCCCCeE--EC----ccCCCCcCCcccCCC
Confidence 99887533 3 2233322 12 235678889999983
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.9e-13 Score=126.23 Aligned_cols=168 Identities=15% Similarity=0.173 Sum_probs=106.5
Q ss_pred EEEECCCCCEEEEe--cCC--eEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEec-CCeEEEE--
Q 010256 238 SISNNSDGETFISA--DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIRLI-- 310 (514)
Q Consensus 238 ~~~~~~~~~~l~s~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~-dg~i~~w-- 310 (514)
.++|+|||+.|+.. .++ .|++||++++.. .. +..+...+....|+|+| +.|+..+. ++...+|
T Consensus 247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~-~~--------lt~~~~~~~~~~wSPDG-~~I~f~s~~~g~~~Iy~~ 316 (429)
T PRK03629 247 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQ--------VTDGRSNNTEPTWFPDS-QNLAYTSDQAGRPQVYKV 316 (429)
T ss_pred CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EE--------ccCCCCCcCceEECCCC-CEEEEEeCCCCCceEEEE
Confidence 46899999888754 344 588899975432 22 22234456789999999 66666554 4444555
Q ss_pred EcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-C---CeEEEEEccCCCCceeeeeeccccc
Q 010256 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQVHEHLR 386 (514)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~---~~i~iwd~~~~~~~~~~~~~~~~~~ 386 (514)
|+.++.. ..+ ..+........|+|||++|+... + ..|.+||+.. +. ...+.... .
T Consensus 317 d~~~g~~-----~~l------------t~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~-g~-~~~Lt~~~-~- 375 (429)
T PRK03629 317 NINGGAP-----QRI------------TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT-GG-VQVLTDTF-L- 375 (429)
T ss_pred ECCCCCe-----EEe------------ecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCC-CC-eEEeCCCC-C-
Confidence 5555432 111 11113456788999999998742 2 4688889875 43 33332111 0
Q ss_pred cccccccccCCccceeeEEEcCCCCEEEEEeCCCc---EEEEecCCCceeeeeecCCCcceeEEEECCC
Q 010256 387 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL---FRVFGCSEGSAESTTLEASKNPMRRQVQTPS 452 (514)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~---i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 452 (514)
.....|+|||++|+.++.++. ++++++... ....+.+|...+...+|+|-
T Consensus 376 --------------~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~--~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 376 --------------DETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR--FKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred --------------CCCceECCCCCEEEEEEcCCCceEEEEEECCCC--CeEECccCCCCcCCcccCCC
Confidence 015789999999998887764 677787533 33566677777888888763
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.3e-13 Score=122.05 Aligned_cols=329 Identities=10% Similarity=0.064 Sum_probs=180.5
Q ss_pred CeE-EEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEEEeeCCCC
Q 010256 48 DHL-ATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANS 126 (514)
Q Consensus 48 ~~l-~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~ 126 (514)
+++ ++-..+|.|.+.|..+.+. +..+.... ..-..+.| ++||
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~-----------------------~~~i~~~~------------~~h~~~~~--s~Dg 48 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKV-----------------------VARIPTGG------------APHAGLKF--SPDG 48 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SE-----------------------EEEEE-ST------------TEEEEEE---TT-S
T ss_pred cEEEEEecCCCEEEEEECCCCeE-----------------------EEEEcCCC------------CceeEEEe--cCCC
Confidence 344 4555789999999877663 34444322 22233556 7889
Q ss_pred cEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCC-CCC
Q 010256 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPG-GVS 205 (514)
Q Consensus 127 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~ 205 (514)
+++++++.||.|.++|+.+++..........+ ..+++++||+.+ ++++ ..+
T Consensus 49 r~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~----------------~~i~~s~DG~~~------------~v~n~~~~ 100 (369)
T PF02239_consen 49 RYLYVANRDGTVSVIDLATGKVVATIKVGGNP----------------RGIAVSPDGKYV------------YVANYEPG 100 (369)
T ss_dssp SEEEEEETTSEEEEEETTSSSEEEEEE-SSEE----------------EEEEE--TTTEE------------EEEEEETT
T ss_pred CEEEEEcCCCeEEEEECCcccEEEEEecCCCc----------------ceEEEcCCCCEE------------EEEecCCC
Confidence 99999999999999999999877666554222 288999999987 5544 678
Q ss_pred cEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCC
Q 010256 206 SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTE 283 (514)
Q Consensus 206 ~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 283 (514)
.+.++| ..+.+..................+.++..+|....++.. +.+.|.+-|....+.... .......
T Consensus 101 ~v~v~D-~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~-------~~i~~g~ 172 (369)
T PF02239_consen 101 TVSVID-AETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV-------TTIKVGR 172 (369)
T ss_dssp EEEEEE-TTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE-------EEEE--T
T ss_pred ceeEec-cccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccce-------eeecccc
Confidence 999888 332222111000000001134567888888888866655 568888888775533221 1122345
Q ss_pred ceEEEEEecCCCcEE-EEEecCCeEEEEEcCCCccccccccceeccCCCCccce-eeccc--cceeEEEEecCCCEEEE-
Q 010256 284 VITSAEFHPTHCNML-AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSF-FTEII--ASISDIKFARNGRHILS- 358 (514)
Q Consensus 284 ~i~~v~~~p~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~i~~~~~s~~g~~l~~- 358 (514)
......|+|++ +++ +....+..|-++|..+++.. ..++....+.+... -..|. +++... ...+...++
T Consensus 173 ~~~D~~~dpdg-ry~~va~~~sn~i~viD~~~~k~v----~~i~~g~~p~~~~~~~~php~~g~vw~~--~~~~~~~~~~ 245 (369)
T PF02239_consen 173 FPHDGGFDPDG-RYFLVAANGSNKIAVIDTKTGKLV----ALIDTGKKPHPGPGANFPHPGFGPVWAT--SGLGYFAIPL 245 (369)
T ss_dssp TEEEEEE-TTS-SEEEEEEGGGTEEEEEETTTTEEE----EEEE-SSSBEETTEEEEEETTTEEEEEE--EBSSSSEEEE
T ss_pred cccccccCccc-ceeeecccccceeEEEeeccceEE----EEeeccccccccccccccCCCcceEEee--ccccceeccc
Confidence 56788999999 555 44566789999999887653 22222111100000 00111 112111 123333333
Q ss_pred EeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEE----eCCCcEEEEecCCCceee
Q 010256 359 RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG----SYSNLFRVFGCSEGSAES 434 (514)
Q Consensus 359 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~----~~dg~i~iwd~~~~~~~~ 434 (514)
-+...+.+||... .+.++++....... -+..+|+++++... ...+.|.++|.++.+ ..
T Consensus 246 ig~~~v~v~d~~~-wkvv~~I~~~G~gl----------------Fi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~-~~ 307 (369)
T PF02239_consen 246 IGTDPVSVHDDYA-WKVVKTIPTQGGGL----------------FIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK-VV 307 (369)
T ss_dssp EE--TTT-STTTB-TSEEEEEE-SSSS------------------EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE-EE
T ss_pred ccCCccccchhhc-CeEEEEEECCCCcc----------------eeecCCCCccEEeeccCCCCCceEEEEECcCcc-ee
Confidence 1223555777776 77788777654331 57889999999987 455899999999873 33
Q ss_pred eeec-CCCcceeEEEECCCCCceeecCCCC--eEEEeeCCCCC
Q 010256 435 TTLE-ASKNPMRRQVQTPSRPSRPLGSLSG--VVRRVKGADNS 474 (514)
Q Consensus 435 ~~~~-~~~~~v~~~~~~~~~~~l~s~s~d~--~v~i~~~~~~~ 474 (514)
.++. +....+..+.|+++|+++-.+.+++ .|.+++...+.
T Consensus 308 ~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~ 350 (369)
T PF02239_consen 308 KTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLK 350 (369)
T ss_dssp E-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTE
T ss_pred EEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcE
Confidence 4443 2233577899999999765554443 57776555443
|
... |
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-13 Score=117.51 Aligned_cols=224 Identities=16% Similarity=0.197 Sum_probs=159.4
Q ss_pred CCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC--CeEEEEEcCCCcccccc
Q 010256 245 GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--GSIRLIDMRQSALCDTH 321 (514)
Q Consensus 245 ~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d--g~i~~wd~~~~~~~~~~ 321 (514)
...|++| .+|.+.+|..+.+...-. ++..+. ....+..+.-+|..+.++++|+.. ..+.+||+.+.+.+
T Consensus 115 dg~Litc~~sG~l~~~~~k~~d~hss----~l~~la-~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qi--- 186 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHDKSGDLHSS----KLIKLA-TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQI--- 186 (412)
T ss_pred CCEEEEEecCCcEEEEeccCCccccc----cceeee-cCCceeeeccCCCCCceEecCchhcccceeeeecccceee---
Confidence 3466777 999999999884431100 000122 235577777777776788889999 89999999987543
Q ss_pred ccceeccCCCCccceeeccccceeEEEEecC--CCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCc
Q 010256 322 SKLFEEQEAPGTRSFFTEIIASISDIKFARN--GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSI 398 (514)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (514)
|.....+...--+. -.-+++++.|-+. ...|++++. +.+++||.+...+|+..+...+..
T Consensus 187 ---w~aKNvpnD~L~Lr-VPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~------------- 249 (412)
T KOG3881|consen 187 ---WSAKNVPNDRLGLR-VPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENP------------- 249 (412)
T ss_pred ---eeccCCCCccccce-eeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCc-------------
Confidence 33332221111000 1136788999887 788888876 999999999878888888776654
Q ss_pred cceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCcccc
Q 010256 399 FDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDA 478 (514)
Q Consensus 399 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~ 478 (514)
++++...|+|++|++|..-|.+..||++.+......+.+-.+.++++..+|.+++||+++.|+.|||.+..... +
T Consensus 250 --is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk---l 324 (412)
T KOG3881|consen 250 --ISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK---L 324 (412)
T ss_pred --ceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccch---h
Confidence 33899999999999999999999999998866657799999999999999999999999999999994333210 1
Q ss_pred CCcccccccceEEEEEcCCCC
Q 010256 479 NGNAFDFSMKLLHLAWHPSEN 499 (514)
Q Consensus 479 ~~~~~~~~~~v~~~~~spd~~ 499 (514)
....+ ....++.+-+.++-+
T Consensus 325 l~kvY-vKs~lt~il~~~~~n 344 (412)
T KOG3881|consen 325 LHKVY-VKSRLTFILLRDDVN 344 (412)
T ss_pred hhhhh-hhccccEEEecCCcc
Confidence 11100 145566666655543
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-13 Score=130.22 Aligned_cols=218 Identities=13% Similarity=0.115 Sum_probs=134.1
Q ss_pred ccCccCeEEEEECCCCCEEEEe-c---CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCC
Q 010256 230 HAHDYHINSISNNSDGETFISA-D---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG 305 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~~~l~s~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg 305 (514)
..+...+.+.+|+|||+.|+.. . ...|.+||+.+++.. .+ ......+...+|+|||..++++.+.+|
T Consensus 192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-~l--------~~~~g~~~~~~~SPDG~~la~~~~~~g 262 (427)
T PRK02889 192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-VV--------ANFKGSNSAPAWSPDGRTLAVALSRDG 262 (427)
T ss_pred ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-Ee--------ecCCCCccceEECCCCCEEEEEEccCC
Confidence 3556778899999999998875 2 346999999865432 21 222344568899999943444667788
Q ss_pred eEEEEEcC--CCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC--CeEEEEEccCCCCceeeeee
Q 010256 306 SIRLIDMR--QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQV 381 (514)
Q Consensus 306 ~i~~wd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~~~~~~~~~~~ 381 (514)
...||.+. ++.. +. +..+........|+|||+.|+..++ +...||.+...+.....+..
T Consensus 263 ~~~Iy~~d~~~~~~-----~~------------lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~ 325 (427)
T PRK02889 263 NSQIYTVNADGSGL-----RR------------LTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTF 325 (427)
T ss_pred CceEEEEECCCCCc-----EE------------CCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEec
Confidence 77777653 3321 11 1112234566789999998886543 66677766532333333322
Q ss_pred ccccccccccccccCCccceeeEEEcCCCCEEEEEeCCC---cEEEEecCCCceeeeeecCCCcceeEEEECCCCCceee
Q 010256 382 HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN---LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPL 458 (514)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 458 (514)
.... ....+|+|||++|+..+.++ .|++||+.+++.. .+... .......|+|++++|+.
T Consensus 326 ~g~~---------------~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~--~lt~~-~~~~~p~~spdg~~l~~ 387 (427)
T PRK02889 326 TGSY---------------NTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT--ALTDT-TRDESPSFAPNGRYILY 387 (427)
T ss_pred CCCC---------------cCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE--EccCC-CCccCceECCCCCEEEE
Confidence 2111 11578999999998776554 6999999877433 22222 23457899999999988
Q ss_pred cCCCCeEE-E----eeCCCCCccccCCcccccccceEEEEEcCC
Q 010256 459 GSLSGVVR-R----VKGADNSALDANGNAFDFSMKLLHLAWHPS 497 (514)
Q Consensus 459 ~s~d~~v~-i----~~~~~~~~~~~~~~~~~~~~~v~~~~~spd 497 (514)
.+.++... + .+|.... .+ ..+.+.+...+|+|-
T Consensus 388 ~~~~~g~~~l~~~~~~g~~~~--~l----~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 388 ATQQGGRSVLAAVSSDGRIKQ--RL----SVQGGDVREPSWGPF 425 (427)
T ss_pred EEecCCCEEEEEEECCCCceE--Ee----ecCCCCCCCCccCCC
Confidence 87655322 2 2222111 11 123567778888874
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.1e-14 Score=125.52 Aligned_cols=181 Identities=19% Similarity=0.184 Sum_probs=128.1
Q ss_pred cccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCC-CcEEEEEecCCe
Q 010256 229 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH-CNMLAYSSSKGS 306 (514)
Q Consensus 229 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~-~~~l~~~~~dg~ 306 (514)
+.||.+.|++++|+.+|.+|++| +|-.+.|||.-..+....+ -.+|...|.++.|-|.. ..++++|+.|..
T Consensus 46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI-------~TgHtaNIFsvKFvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI-------STGHTANIFSVKFVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred hccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee-------ecccccceeEEeeeccCCCeEEEeccCcce
Confidence 58999999999999999999999 9999999999854444332 46799999999999853 368889999999
Q ss_pred EEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCC-CEEEEE-eCCeEEEEEccCCCCceeeeeeccc
Q 010256 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-RHILSR-DYMTLKLWDINMDSGPVATFQVHEH 384 (514)
Q Consensus 307 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~ 384 (514)
|++||+...+.-. ..+....+...+.-|...|..++-.|++ ..+.++ .||+|+-+|++.+..+......+..
T Consensus 119 i~lfdl~~~~~~~------~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~ 192 (758)
T KOG1310|consen 119 IKLFDLDSSKEGG------MDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSI 192 (758)
T ss_pred EEEEecccccccc------cccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHH
Confidence 9999998633210 0011111223345577889999999988 455555 5699999999864444333333332
Q ss_pred cccccccccccCCccceeeEEEcCCC-CEEEEEeCCCcEEEEecC
Q 010256 385 LRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 385 ~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~ 428 (514)
...... ......++.++|.. .+|+.|+.|--.++||..
T Consensus 193 l~ny~~------~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 193 LVNYNP------QLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred HHHhch------hhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 221111 11123388999865 578899999999999964
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-11 Score=111.97 Aligned_cols=312 Identities=10% Similarity=0.112 Sum_probs=183.1
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccc
Q 010256 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (514)
....+..++|++|+++|.+. +..++|++....... ..... ..
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~---lt~~~----------------------------------~~ 75 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVV---LCVEL----------------------------------KK 75 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEE---EEecc----------------------------------ce
Confidence 34478899999999999875 567999998766421 00111 12
Q ss_pred eeEEEEeeCCCCcEEEEe-----eC-----CCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCC
Q 010256 115 INKIRWCQSANSALYLLS-----TN-----DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (514)
Q Consensus 115 v~~i~~~~~~~~~~l~s~-----~~-----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 184 (514)
+.++.|+ +.|.+|.+= .. .-.+++|+++++.....+.... ...+ .+.|++|..
T Consensus 76 ~~~L~fS--P~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~--------------Q~~W-~~qfs~dEs 138 (566)
T KOG2315|consen 76 TYDLLFS--PKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKM--------------QNGW-VPQFSIDES 138 (566)
T ss_pred eeeeeec--ccccccccccccccccCCCCCCCceeeeeeccceehhheehhh--------------hcCc-ccccccchh
Confidence 4555552 333344331 11 3457799998854433332221 1112 556777766
Q ss_pred ccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCC--CEEEE------ecCCeE
Q 010256 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG--ETFIS------ADDLRI 256 (514)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s------~~d~~i 256 (514)
. +.--..+.+.+|+ +.+... ....-|...|..+.++|.+ ..+|+ |.-..|
T Consensus 139 l-------------~arlv~nev~f~~-~~~f~~--------~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~v 196 (566)
T KOG2315|consen 139 L-------------AARLVSNEVQFYD-LGSFKT--------IQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASV 196 (566)
T ss_pred h-------------hhhhhcceEEEEe-cCCccc--------eeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEE
Confidence 5 3344556788887 333221 1113466788999999873 34444 135679
Q ss_pred EEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEec--C---------CeEEEEEcCCCccccccccce
Q 010256 257 NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS--K---------GSIRLIDMRQSALCDTHSKLF 325 (514)
Q Consensus 257 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~--d---------g~i~~wd~~~~~~~~~~~~~~ 325 (514)
+||........ ..+.. .++ ....=..+.|++-|..+|+.++. | .+++++++..... .+
T Consensus 197 ri~~~~~~~~~-~~~a~--ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~------~V 265 (566)
T KOG2315|consen 197 RIYKYPEEGQH-QPVAN--KSF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESV------SV 265 (566)
T ss_pred EEecccccccc-chhhh--ccc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceE------EE
Confidence 99987622211 11000 111 12222456788777545554443 3 3567777662221 11
Q ss_pred eccCCCCccceeeccccceeEEEEecCCCEEEEE-eC--CeEEEEEccCCCCceeeeeeccccccccccccccCCcccee
Q 010256 326 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DY--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKF 402 (514)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 402 (514)
... ..++|.++.|+|+|+-+++. +. ..+.|||++ +.++..+.. +..+
T Consensus 266 ~L~-----------k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr--~~~v~df~e--gpRN--------------- 315 (566)
T KOG2315|consen 266 PLL-----------KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR--GKPVFDFPE--GPRN--------------- 315 (566)
T ss_pred ecC-----------CCCCceEEEECCCCCEEEEEEecccceEEEEcCC--CCEeEeCCC--CCcc---------------
Confidence 111 13799999999999888774 33 899999998 676665543 3332
Q ss_pred eEEEcCCCCEEEEEeCC---CcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 403 ECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 403 ~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
++-|+|.|++|+.++-+ |.+-|||+.+. +.+..++... -+-..|+|||++++++...=.+|+
T Consensus 316 ~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~-K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrv 380 (566)
T KOG2315|consen 316 TAFFNPHGNIILLAGFGNLPGDMEVWDVPNR-KLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRV 380 (566)
T ss_pred ceEECCCCCEEEEeecCCCCCceEEEeccch-hhccccccCC--ceEEEEcCCCcEEEEEeccccEEe
Confidence 78899999999987754 78999999984 3333333322 234567777777777765444444
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.9e-13 Score=113.77 Aligned_cols=148 Identities=18% Similarity=0.315 Sum_probs=102.5
Q ss_pred EEEEECCCCCEEEEe-c----------CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEE--Eec
Q 010256 237 NSISNNSDGETFISA-D----------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY--SSS 303 (514)
Q Consensus 237 ~~~~~~~~~~~l~s~-~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~--~~~ 303 (514)
..+.|+++|++|+.- . -+...+|.++..+.....+ .+. ..++|.+++|+|++ +.|++ |..
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i-----~l~-~~~~I~~~~WsP~g-~~favi~g~~ 81 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESI-----ELK-KEGPIHDVAWSPNG-NEFAVIYGSM 81 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCcccee-----ecc-CCCceEEEEECcCC-CEEEEEEccC
Confidence 357899999888763 2 2346666665444333322 121 24569999999999 55543 446
Q ss_pred CCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe----CCeEEEEEccCCCCceeee
Q 010256 304 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----YMTLKLWDINMDSGPVATF 379 (514)
Q Consensus 304 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~----~~~i~iwd~~~~~~~~~~~ 379 (514)
++.|.+||++. +. +..+. ...+..+.|+|+|++|+.++ .|.|.+||++. .+.+...
T Consensus 82 ~~~v~lyd~~~-~~----i~~~~--------------~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-~~~i~~~ 141 (194)
T PF08662_consen 82 PAKVTLYDVKG-KK----IFSFG--------------TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-KKKISTF 141 (194)
T ss_pred CcccEEEcCcc-cE----eEeec--------------CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-CEEeecc
Confidence 78999999963 22 22222 24678899999999999864 27899999985 6666554
Q ss_pred eeccccccccccccccCCccceeeEEEcCCCCEEEEEeC------CCcEEEEecC
Q 010256 380 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY------SNLFRVFGCS 428 (514)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------dg~i~iwd~~ 428 (514)
.... +..++|+|||++|++++. |+.++||+..
T Consensus 142 ~~~~-----------------~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 142 EHSD-----------------ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred ccCc-----------------EEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 3222 238999999999998764 7889999986
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.9e-14 Score=124.20 Aligned_cols=265 Identities=11% Similarity=0.144 Sum_probs=182.8
Q ss_pred CCCCCcccccccccccchhhc-cccCccc-cccc------ccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcc
Q 010256 3 NGGGSSEAAAQPLEWKFSQVF-GERTAGE-EVQE------VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQR 74 (514)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~h------~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~ 74 (514)
+..|=-++.+.+..|++.|.- .+..+.. ...| .-.-..+.++.+|.+|+.|+..|.|..+|+.+++..
T Consensus 89 e~~G~le~e~~EkT~~v~Q~~Ia~~Vdi~sa~k~f~L~l~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~---- 164 (545)
T KOG1272|consen 89 ETAGYLEAEGLEKTYKVRQDDIAENVDIASATKHFDLSLPEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLH---- 164 (545)
T ss_pred ccCCcccccCCcceeeeEHhhhhhhccHHhHHhhccccccccCCeeeeecCCccEEEecCCccceeeeecccceee----
Confidence 344555566678889988841 1111100 0011 223457888999999999999999999999888753
Q ss_pred cccccccccccCCccceeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeec
Q 010256 75 RDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDW 154 (514)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~ 154 (514)
.++.- .+.|.++.|..++ ++ ++....+.+.|||-..-++.++...
T Consensus 165 -------------------~Ei~v-------------~Etv~Dv~~LHne--q~-~AVAQK~y~yvYD~~GtElHClk~~ 209 (545)
T KOG1272|consen 165 -------------------FEINV-------------METVRDVTFLHNE--QF-FAVAQKKYVYVYDNNGTELHCLKRH 209 (545)
T ss_pred -------------------eeeeh-------------hhhhhhhhhhcch--HH-HHhhhhceEEEecCCCcEEeehhhc
Confidence 22221 2679999996433 34 4555668999999877776655443
Q ss_pred cCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCcc
Q 010256 155 NVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDY 234 (514)
Q Consensus 155 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~ 234 (514)
. .+. .+.|.|.--.| ++++..|-++--| +..... ...+ ....+
T Consensus 210 ~----------~v~-------rLeFLPyHfLL------------~~~~~~G~L~Y~D-VS~Gkl------Va~~-~t~~G 252 (545)
T KOG1272|consen 210 I----------RVA-------RLEFLPYHFLL------------VAASEAGFLKYQD-VSTGKL------VASI-RTGAG 252 (545)
T ss_pred C----------chh-------hhcccchhhee------------eecccCCceEEEe-echhhh------hHHH-HccCC
Confidence 2 222 56777777777 8888888888766 222221 1111 33456
Q ss_pred CeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcC
Q 010256 235 HINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~ 313 (514)
.+..++-+|-+..+-.| ..|+|.+|.....+.+. .+..|.++|.+|++.++| +++++.+.|..++|||++
T Consensus 253 ~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLv--------KiLcH~g~V~siAv~~~G-~YMaTtG~Dr~~kIWDlR 323 (545)
T KOG1272|consen 253 RTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLV--------KILCHRGPVSSIAVDRGG-RYMATTGLDRKVKIWDLR 323 (545)
T ss_pred ccchhhcCCccceEEEcCCCceEEecCCCCcchHH--------HHHhcCCCcceEEECCCC-cEEeecccccceeEeeec
Confidence 78888999999999999 99999999998766655 456799999999999999 999999999999999999
Q ss_pred CCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEcc
Q 010256 314 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDIN 370 (514)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~ 370 (514)
..... .++..+ -+...+++|..| +||.+-...|.||.-.
T Consensus 324 ~~~ql----~t~~tp-------------~~a~~ls~Sqkg-lLA~~~G~~v~iw~d~ 362 (545)
T KOG1272|consen 324 NFYQL----HTYRTP-------------HPASNLSLSQKG-LLALSYGDHVQIWKDA 362 (545)
T ss_pred ccccc----ceeecC-------------CCcccccccccc-ceeeecCCeeeeehhh
Confidence 86542 222221 356778888665 4444433578999643
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.6e-14 Score=125.03 Aligned_cols=189 Identities=13% Similarity=0.141 Sum_probs=131.5
Q ss_pred CCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccc-
Q 010256 242 NSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD- 319 (514)
Q Consensus 242 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~- 319 (514)
.|.+--++.| .-|.|.+.|... ....++++. ...-....++++.|-|.+...|+.+-.+|.+.+||....--..
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~-~~~sklfne---~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~ 257 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPIN-FEVSKLFNE---ERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATA 257 (636)
T ss_pred CCCCcceEEeeccCceEEecchh-hHHHHhhhh---cccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCC
Confidence 3557778888 889999998874 222222111 1111347899999999887899999999999999874311000
Q ss_pred ---cc--------ccceeccCCCCccceeeccccceeEEEEecCCCEEEEE-eCCeEEEEEccCCCCceeeeeecccccc
Q 010256 320 ---TH--------SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRP 387 (514)
Q Consensus 320 ---~~--------~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~ 387 (514)
.. +.+.+.+...++...+.--.+.|...+|+|||++||+- .||.++|||..+ .+++..++..-+
T Consensus 258 p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt-~eLlg~mkSYFG--- 333 (636)
T KOG2394|consen 258 PSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDT-QELLGVMKSYFG--- 333 (636)
T ss_pred CcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccH-HHHHHHHHhhcc---
Confidence 00 00111111112222233334589999999999999995 569999999987 555554432222
Q ss_pred ccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECC
Q 010256 388 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTP 451 (514)
Q Consensus 388 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 451 (514)
...+++|||||+||++|++|-.|.||.+... +....-++|+++|..++|.|
T Consensus 334 ------------GLLCvcWSPDGKyIvtGGEDDLVtVwSf~er-RVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 334 ------------GLLCVCWSPDGKYIVTGGEDDLVTVWSFEER-RVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ------------ceEEEEEcCCccEEEecCCcceEEEEEeccc-eEEEeccccccceeeEeecc
Confidence 2349999999999999999999999999865 55577889999999999987
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.9e-13 Score=114.96 Aligned_cols=183 Identities=14% Similarity=0.154 Sum_probs=126.5
Q ss_pred eEEEEECCCCC-EEEEe-cC--CeEEEEeccCCCceeeeeccCCCccc-ccCCceEEEEEecC--CCcEEEEEecCCeEE
Q 010256 236 INSISNNSDGE-TFISA-DD--LRINLWNLEISNQSFNIVDVKPANME-DLTEVITSAEFHPT--HCNMLAYSSSKGSIR 308 (514)
Q Consensus 236 v~~~~~~~~~~-~l~s~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~i~~v~~~p~--~~~~l~~~~~dg~i~ 308 (514)
+..+.-++... ++++| .. ..+++||++..++.+.-.+++...+. .-.-+++++.|-+. . +.|++++.-+.++
T Consensus 151 ~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~-~~fat~T~~hqvR 229 (412)
T KOG3881|consen 151 LYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPN-YKFATITRYHQVR 229 (412)
T ss_pred eeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCC-ceEEEEecceeEE
Confidence 33444444433 44446 66 78999999876555443333322221 12345678889876 5 7999999999999
Q ss_pred EEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceee-eeeccccc
Q 010256 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVAT-FQVHEHLR 386 (514)
Q Consensus 309 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~-~~~~~~~~ 386 (514)
+||.+.+... +..|+-.+ .+|+++...|+|.++++|.. +.+..||++. ++.+.. +.+-.+.+
T Consensus 230 ~YDt~~qRRP---V~~fd~~E------------~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~-~kl~g~~~kg~tGsi 293 (412)
T KOG3881|consen 230 LYDTRHQRRP---VAQFDFLE------------NPISSTGLTPSGNFIYTGNTKGQLAKFDLRG-GKLLGCGLKGITGSI 293 (412)
T ss_pred EecCcccCcc---eeEecccc------------CcceeeeecCCCcEEEEecccchhheecccC-ceeeccccCCccCCc
Confidence 9999976643 44444333 68999999999999999987 9999999997 665544 65555443
Q ss_pred cccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCC
Q 010256 387 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS 452 (514)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 452 (514)
. ++..+|.+++|++++-|..|||+|+++.+.+.+.+ -.+..+.+.+.++
T Consensus 294 r---------------sih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY--vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 294 R---------------SIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY--VKSRLTFILLRDD 342 (412)
T ss_pred c---------------eEEEcCCCceEEeeccceeEEEeecccchhhhhhh--hhccccEEEecCC
Confidence 2 88999999999999999999999999853322111 1234455666544
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.4e-12 Score=123.01 Aligned_cols=186 Identities=12% Similarity=0.076 Sum_probs=121.5
Q ss_pred cCccCeEEEEECCCCCEEEEe----cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCe
Q 010256 231 AHDYHINSISNNSDGETFISA----DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 306 (514)
Q Consensus 231 ~h~~~v~~~~~~~~~~~l~s~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~ 306 (514)
.|...+...+|+|||+.|+.. .+..|.+||+.++... .+..+.+.+...+|+|+|..++++.+.++.
T Consensus 199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~---------~l~~~~g~~~~~~~SPDG~~la~~~~~~g~ 269 (435)
T PRK05137 199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE---------LVGNFPGMTFAPRFSPDGRKVVMSLSQGGN 269 (435)
T ss_pred cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE---------EeecCCCcccCcEECCCCCEEEEEEecCCC
Confidence 455678899999999988875 2568999999865432 123345567788999999444456666665
Q ss_pred --EEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC----CeEEEEEccCCCCceeeee
Q 010256 307 --IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY----MTLKLWDINMDSGPVATFQ 380 (514)
Q Consensus 307 --i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~----~~i~iwd~~~~~~~~~~~~ 380 (514)
|.+||+.++... . +..+........|+|||+.|+..++ ..|+++|+.. .....+.
T Consensus 270 ~~Iy~~d~~~~~~~-----~------------Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g--~~~~~lt 330 (435)
T PRK05137 270 TDIYTMDLRSGTTT-----R------------LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG--SNPRRIS 330 (435)
T ss_pred ceEEEEECCCCceE-----E------------ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC--CCeEEee
Confidence 667788776531 1 1222234567899999999887543 3677778763 3344443
Q ss_pred eccccccccccccccCCccceeeEEEcCCCCEEEEEeCC---CcEEEEecCCCceeeeeecCCCcceeEEEECCCCCcee
Q 010256 381 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP 457 (514)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 457 (514)
..... +....|+|||++|+..+.+ ..|.+||+..+... .+.. ...+....|+||++.|+
T Consensus 331 ~~~~~---------------~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~--~lt~-~~~~~~p~~spDG~~i~ 392 (435)
T PRK05137 331 FGGGR---------------YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER--ILTS-GFLVEGPTWAPNGRVIM 392 (435)
T ss_pred cCCCc---------------ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE--eccC-CCCCCCCeECCCCCEEE
Confidence 32211 1167899999999876543 36888898654322 2221 22466789999999887
Q ss_pred ecCCC
Q 010256 458 LGSLS 462 (514)
Q Consensus 458 s~s~d 462 (514)
..+.+
T Consensus 393 ~~~~~ 397 (435)
T PRK05137 393 FFRQT 397 (435)
T ss_pred EEEcc
Confidence 76543
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.1e-13 Score=126.38 Aligned_cols=215 Identities=16% Similarity=0.162 Sum_probs=132.1
Q ss_pred ccCccCeEEEEECCCCCEEEEe-c---CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCC
Q 010256 230 HAHDYHINSISNNSDGETFISA-D---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG 305 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~~~l~s~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg 305 (514)
..+...+.+.+|+|||+.|+.. . ...|++||+.++... . +....+...+++|+|+|..++++.+.+|
T Consensus 200 t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~--------l~~~~g~~~~~~~SpDG~~l~~~~s~~g 270 (433)
T PRK04922 200 LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-L--------VASFRGINGAPSFSPDGRRLALTLSRDG 270 (433)
T ss_pred ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-E--------eccCCCCccCceECCCCCEEEEEEeCCC
Confidence 4556678899999999998876 2 347999999755432 1 1222334457899999944445556665
Q ss_pred --eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC--Ce--EEEEEccCCCCceeee
Q 010256 306 --SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MT--LKLWDINMDSGPVATF 379 (514)
Q Consensus 306 --~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~--i~iwd~~~~~~~~~~~ 379 (514)
.|.+||+.++... . +..+.......+|+|||+.|+..++ +. |.++|+.. ++ ...+
T Consensus 271 ~~~Iy~~d~~~g~~~-----~------------lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~-g~-~~~l 331 (433)
T PRK04922 271 NPEIYVMDLGSRQLT-----R------------LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG-GS-AERL 331 (433)
T ss_pred CceEEEEECCCCCeE-----E------------CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-CC-eEEe
Confidence 5899999876531 1 1112233567899999999887653 44 55556553 32 3333
Q ss_pred eeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCC---cEEEEecCCCceeeeeecCCCcceeEEEECCCCCce
Q 010256 380 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN---LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSR 456 (514)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 456 (514)
..+... ....+|+|||++|+..+.++ .|++||+.++... .+. +........|+|+++++
T Consensus 332 t~~g~~---------------~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~--~Lt-~~~~~~~p~~spdG~~i 393 (433)
T PRK04922 332 TFQGNY---------------NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR--TLT-PGSLDESPSFAPNGSMV 393 (433)
T ss_pred ecCCCC---------------ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE--ECC-CCCCCCCceECCCCCEE
Confidence 222111 11689999999998765433 6999999876433 332 22234567899999988
Q ss_pred eecCCC-Ce--EEEe--eCCCCCccccCCcccccccceEEEEEcC
Q 010256 457 PLGSLS-GV--VRRV--KGADNSALDANGNAFDFSMKLLHLAWHP 496 (514)
Q Consensus 457 ~s~s~d-~~--v~i~--~~~~~~~~~~~~~~~~~~~~v~~~~~sp 496 (514)
+..+.+ +. +.++ +|.... .+. .+.+.+..++|+|
T Consensus 394 ~~~s~~~g~~~L~~~~~~g~~~~--~l~----~~~g~~~~p~wsp 432 (433)
T PRK04922 394 LYATREGGRGVLAAVSTDGRVRQ--RLV----SADGEVREPAWSP 432 (433)
T ss_pred EEEEecCCceEEEEEECCCCceE--Ecc----cCCCCCCCCccCC
Confidence 777654 23 3332 222111 111 1345677788887
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.9e-13 Score=120.70 Aligned_cols=296 Identities=12% Similarity=0.102 Sum_probs=196.6
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
+.|+.|.| ...|..|++++.|..|.+||...++.+.
T Consensus 143 GcVntV~F--N~~Gd~l~SgSDD~~vv~WdW~~~~~~l------------------------------------------ 178 (559)
T KOG1334|consen 143 GCVNTVHF--NQRGDVLASGSDDLQVVVWDWVSGSPKL------------------------------------------ 178 (559)
T ss_pred Cccceeee--cccCceeeccCccceEEeehhhccCccc------------------------------------------
Confidence 99999999 5677899999999999999998765221
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC--CCEEEEe-cCCeEEEEeccCCCceee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
.|..+|...|....|-|. ...++++ .||.+++=.+...+.+..
T Consensus 179 ----------------------------------~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~ 224 (559)
T KOG1334|consen 179 ----------------------------------SFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVEN 224 (559)
T ss_pred ----------------------------------ccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceec
Confidence 112456666666666653 4456665 899999887765444332
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
. ..+..|.+.|..++.-|+.+..|.+++.|+.+.-+|++.+....... ..+..... .-....++.
T Consensus 225 t-----~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~----cr~~~~~~------~v~L~~Ia~ 289 (559)
T KOG1334|consen 225 T-----KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV----CREADEKE------RVGLYTIAV 289 (559)
T ss_pred c-----eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee----eeccCCcc------ceeeeeEec
Confidence 2 25667999999999999998999999999999999999876432211 11110000 024678888
Q ss_pred ecCCC-EEEEE-eCCeEEEEEccCCCC-----ceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcE
Q 010256 350 ARNGR-HILSR-DYMTLKLWDINMDSG-----PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 422 (514)
Q Consensus 350 s~~g~-~l~~~-~~~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 422 (514)
.|... .+++| .+.-+++||.+.-.+ .+..+..|.-. .+....|++++|+.++.-|.++-.|-.|
T Consensus 290 ~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~---------~d~~v~ITgl~Ysh~~sElLaSYnDe~I 360 (559)
T KOG1334|consen 290 DPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLV---------EDDPVNITGLVYSHDGSELLASYNDEDI 360 (559)
T ss_pred CCCCccccccCChhhhhhhhcccchhhccccchhhhcCCcccc---------ccCcccceeEEecCCccceeeeecccce
Confidence 88665 55554 568899999875211 11222111110 1222347799999877766666677789
Q ss_pred EEEecCCCc-----------e-eeeeecCCCcc--eeEEEE-CCCCCceeecCCCCeEEEeeCCCCCccccCCccccccc
Q 010256 423 RVFGCSEGS-----------A-ESTTLEASKNP--MRRQVQ-TPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSM 487 (514)
Q Consensus 423 ~iwd~~~~~-----------~-~~~~~~~~~~~--v~~~~~-~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~ 487 (514)
+++.-.-+. . ....+++|... |..+-| -|...|+++||..|.|-|++.. ..++.....+-..
T Consensus 361 YLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~---t~eii~~MegDr~ 437 (559)
T KOG1334|consen 361 YLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKK---TGEIIRFMEGDRH 437 (559)
T ss_pred EEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecc---hhHHHHHhhcccc
Confidence 999643221 1 12347788654 556655 5889999999999999993221 1111111112234
Q ss_pred ceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 488 KLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 488 ~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
-|+||.=||--..||+.+ +..+.||.
T Consensus 438 VVNCLEpHP~~PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 438 VVNCLEPHPHLPVLASSGIDHDVKIWT 464 (559)
T ss_pred eEeccCCCCCCchhhccCCccceeeec
Confidence 889999999999999665 88899995
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-10 Score=99.05 Aligned_cols=211 Identities=16% Similarity=0.144 Sum_probs=136.9
Q ss_pred EEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCC-----cccccCCceEEEEEecCCCcEEEEEec-CCeEE
Q 010256 237 NSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPA-----NMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIR 308 (514)
Q Consensus 237 ~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~i~~v~~~p~~~~~l~~~~~-dg~i~ 308 (514)
..+++++++++++++ ..|.|.++-++........+..-.. .-+....-+....+.|++ +++++.+- --+|.
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG~Dri~ 170 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG-RYLVVPDLGTDRIF 170 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC-CEEEEeecCCceEE
Confidence 678999999999998 6899999999765544332211000 000011227889999999 77777664 45799
Q ss_pred EEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC--CeEEEEEccCCCCceeeeeeccccc
Q 010256 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLR 386 (514)
Q Consensus 309 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~ 386 (514)
+|++..+.+.......++. ...-+.|.|+|++++.+.-.. ++|.+|........+..++.+....
T Consensus 171 ~y~~~dg~L~~~~~~~v~~-------------G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP 237 (346)
T COG2706 171 LYDLDDGKLTPADPAEVKP-------------GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLP 237 (346)
T ss_pred EEEcccCccccccccccCC-------------CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCc
Confidence 9999987764322222211 145788999999999988654 9999999986434555555443322
Q ss_pred cccccccccCCccceeeEEEcCCCCEEEEEe-CCCcEEEEecCCCceee---eeecCCCcceeEEEECCCCCceeecCCC
Q 010256 387 PKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAES---TTLEASKNPMRRQVQTPSRPSRPLGSLS 462 (514)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~s~s~d 462 (514)
.... ... ..-.+.+++||++|.++. ....|-+|.+......+ .....+....+...+++++++|+.+..+
T Consensus 238 ~dF~---g~~---~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~ 311 (346)
T COG2706 238 EDFT---GTN---WAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQK 311 (346)
T ss_pred cccC---CCC---ceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccC
Confidence 2111 111 122788999999998765 33478888876542222 2223444456789999999999888765
Q ss_pred C-eEEE
Q 010256 463 G-VVRR 467 (514)
Q Consensus 463 ~-~v~i 467 (514)
+ .+.+
T Consensus 312 sd~i~v 317 (346)
T COG2706 312 SDNITV 317 (346)
T ss_pred CCcEEE
Confidence 4 4444
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.3e-12 Score=116.29 Aligned_cols=290 Identities=12% Similarity=0.149 Sum_probs=174.8
Q ss_pred ccccccccceeEEEEeeCCCCcEEEE-eeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCC
Q 010256 106 LKSLEIEEKINKIRWCQSANSALYLL-STNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (514)
Q Consensus 106 ~~~~~~~~~v~~i~~~~~~~~~~l~s-~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 184 (514)
+..+++...-+.|.. ++||+|+++ |...-.|++||+.+-.++....+.... |. -...+.|-.
T Consensus 45 iQdfe~p~ast~ik~--s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~--------V~-------feiLsDD~S 107 (703)
T KOG2321|consen 45 IQDFEMPTASTRIKV--SPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEV--------VD-------FEILSDDYS 107 (703)
T ss_pred HHhcCCccccceeEe--cCCCcEEEEecccCCceEEEEcccceeeeeecccccc--------ee-------EEEeccchh
Confidence 344555677888888 678888765 677889999999876654433333111 11 111112222
Q ss_pred ccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC-CCEEEEecCCeEEEEeccC
Q 010256 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISADDLRINLWNLEI 263 (514)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~d~~i~iwd~~~ 263 (514)
.+ +.-..|.+|.+-. .-. ..+...-...-.+++++.- ..+++.|....|+-++++.
T Consensus 108 K~------------v~L~~DR~IefHa----k~G-------~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEq 164 (703)
T KOG2321|consen 108 KS------------VFLQNDRTIEFHA----KYG-------RHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQ 164 (703)
T ss_pred hh------------eEeecCceeeehh----hcC-------eeeeeecCcCCccccccCCCccEEEeecCcceEEEEccc
Confidence 11 1112222222111 000 0000000012245566543 4455555778898899986
Q ss_pred CCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccc
Q 010256 264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 343 (514)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (514)
+.-+. .+....+.++++..++-. .+|++|+.+|.|..||.+....+. .++...... ..........
T Consensus 165 GrfL~--------P~~~~~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ksrv~----~l~~~~~v~-s~pg~~~~~s 230 (703)
T KOG2321|consen 165 GRFLN--------PFETDSGELNVVSINEEH-GLLACGTEDGVVEFWDPRDKSRVG----TLDAASSVN-SHPGGDAAPS 230 (703)
T ss_pred ccccc--------ccccccccceeeeecCcc-ceEEecccCceEEEecchhhhhhe----eeecccccC-CCccccccCc
Confidence 54332 344456889999999988 799999999999999999877642 222221100 0000111235
Q ss_pred eeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCC--CCEEEEEeCCC
Q 010256 344 ISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD--GGRVATGSYSN 420 (514)
Q Consensus 344 i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~s~~~dg 420 (514)
|+++.|+.+|-.+++|.. |.+.|||++. .+++.. ..|....+ |..+.|.+. ++.+++. +..
T Consensus 231 vTal~F~d~gL~~aVGts~G~v~iyDLRa-~~pl~~-kdh~~e~p-------------i~~l~~~~~~~q~~v~S~-Dk~ 294 (703)
T KOG2321|consen 231 VTALKFRDDGLHVAVGTSTGSVLIYDLRA-SKPLLV-KDHGYELP-------------IKKLDWQDTDQQNKVVSM-DKR 294 (703)
T ss_pred ceEEEecCCceeEEeeccCCcEEEEEccc-CCceee-cccCCccc-------------eeeecccccCCCceEEec-chH
Confidence 999999999999999966 9999999997 665543 33333221 347788665 4455554 346
Q ss_pred cEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 421 LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 421 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.++|||-.+|+.. ..++ ....++.+++-|+..++.++-++..+..
T Consensus 295 ~~kiWd~~~Gk~~-asiE-pt~~lND~C~~p~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 295 ILKIWDECTGKPM-ASIE-PTSDLNDFCFVPGSGMFFTANESSKMHT 339 (703)
T ss_pred HhhhcccccCCce-eecc-ccCCcCceeeecCCceEEEecCCCccee
Confidence 7899999988543 3333 3445899999999999998877765543
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4e-12 Score=121.24 Aligned_cols=168 Identities=13% Similarity=0.134 Sum_probs=101.0
Q ss_pred EEEEECCCCCEEEEe--cCC--eEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEe-cCCe--EEE
Q 010256 237 NSISNNSDGETFISA--DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGS--IRL 309 (514)
Q Consensus 237 ~~~~~~~~~~~l~s~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg~--i~~ 309 (514)
.+.+|+|||+.|+.. .++ .|++||+.+++. . .+..+.......+|+|+| +.|+..+ .+|. |.+
T Consensus 251 ~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~--------~lt~~~~~~~~~~~spDG-~~l~f~sd~~g~~~iy~ 320 (433)
T PRK04922 251 GAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-T--------RLTNHFGIDTEPTWAPDG-KSIYFTSDRGGRPQIYR 320 (433)
T ss_pred cCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-E--------ECccCCCCccceEECCCC-CEEEEEECCCCCceEEE
Confidence 356899999877643 333 699999985542 2 223344445678999999 6666555 4554 555
Q ss_pred EEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-C---CeEEEEEccCCCCceeeeeecccc
Q 010256 310 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQVHEHL 385 (514)
Q Consensus 310 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~---~~i~iwd~~~~~~~~~~~~~~~~~ 385 (514)
+|+.+++.. .+. .+......++|+|+|++|+..+ + ..|.+||+.. ++.. .+.... .
T Consensus 321 ~dl~~g~~~-----~lt------------~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~-g~~~-~Lt~~~-~ 380 (433)
T PRK04922 321 VAASGGSAE-----RLT------------FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST-GSVR-TLTPGS-L 380 (433)
T ss_pred EECCCCCeE-----Eee------------cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCC-CCeE-ECCCCC-C
Confidence 666554421 110 0112344689999999998743 2 3689999875 4432 332111 1
Q ss_pred ccccccccccCCccceeeEEEcCCCCEEEEEeCC---CcEEEEecCCCceeeeeecCCCcceeEEEECC
Q 010256 386 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTP 451 (514)
Q Consensus 386 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 451 (514)
. ....|+|||++|+..+.+ +.|+++++..+ ....+..+...+...+|+|
T Consensus 381 ~---------------~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~--~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 381 D---------------ESPSFAPNGSMVLYATREGGRGVLAAVSTDGR--VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred C---------------CCceECCCCCEEEEEEecCCceEEEEEECCCC--ceEEcccCCCCCCCCccCC
Confidence 1 157899999988866643 45778887543 2344444445555566654
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.6e-12 Score=119.31 Aligned_cols=172 Identities=12% Similarity=0.163 Sum_probs=99.6
Q ss_pred eEEEEECCCCCEEEE-e-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEe-cCCeEEEEEc
Q 010256 236 INSISNNSDGETFIS-A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDM 312 (514)
Q Consensus 236 v~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg~i~~wd~ 312 (514)
+...+|+|||+.|+. . .++...+|.++....... .+..+........|+||| +.|+..+ .++...+|.+
T Consensus 242 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-------~lt~~~~~~~~~~wSpDG-~~l~f~s~~~g~~~Iy~~ 313 (427)
T PRK02889 242 NSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLR-------RLTQSSGIDTEPFFSPDG-RSIYFTSDRGGAPQIYRM 313 (427)
T ss_pred ccceEECCCCCEEEEEEccCCCceEEEEECCCCCcE-------ECCCCCCCCcCeEEcCCC-CEEEEEecCCCCcEEEEE
Confidence 346789999988874 4 677766665542221111 233344455678899999 6666544 4566677765
Q ss_pred C--CCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC----CeEEEEEccCCCCceeeeeeccccc
Q 010256 313 R--QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY----MTLKLWDINMDSGPVATFQVHEHLR 386 (514)
Q Consensus 313 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~----~~i~iwd~~~~~~~~~~~~~~~~~~ 386 (514)
. ++... ...+.. ......+|+|||++|+..+. ..|.+||+.. ++. ..+.... ..
T Consensus 314 ~~~~g~~~---~lt~~g--------------~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~-g~~-~~lt~~~-~~ 373 (427)
T PRK02889 314 PASGGAAQ---RVTFTG--------------SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT-GQV-TALTDTT-RD 373 (427)
T ss_pred ECCCCceE---EEecCC--------------CCcCceEECCCCCEEEEEEccCCcEEEEEEECCC-CCe-EEccCCC-Cc
Confidence 4 33210 001111 22345789999999987532 3699999875 432 2332211 10
Q ss_pred cccccccccCCccceeeEEEcCCCCEEEEEeCCC---cEEEEecCCCceeeeeecCCCcceeEEEECCC
Q 010256 387 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN---LFRVFGCSEGSAESTTLEASKNPMRRQVQTPS 452 (514)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 452 (514)
....|+|||++|+.++.++ .+++.++. + .....+..+...+...+|+|-
T Consensus 374 ---------------~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g-~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 374 ---------------ESPSFAPNGRYILYATQQGGRSVLAAVSSD-G-RIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred ---------------cCceECCCCCEEEEEEecCCCEEEEEEECC-C-CceEEeecCCCCCCCCccCCC
Confidence 1689999999988776543 35555653 3 233445455555666666653
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.1e-10 Score=98.61 Aligned_cols=289 Identities=12% Similarity=0.175 Sum_probs=178.8
Q ss_pred ccccchhhccccCcccccccccceEEEEEcCCCCeEEEecC---CCeEEEEEecC--CcccCCcccccccccccccCCcc
Q 010256 15 LEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDR---GGRVVLFERTD--TRDNGGQRRDLEMMDYSMSRHPE 89 (514)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~---dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 89 (514)
..|++...-|+......+.+...++-|+|+|++++|.++.. +|.|.-|.++. ++..
T Consensus 19 ~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt------------------- 79 (346)
T COG2706 19 YVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT------------------- 79 (346)
T ss_pred EEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE-------------------
Confidence 45777755566666677888999999999999999998865 46788888764 3321
Q ss_pred ceeee--eeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeC-CCeEEEEEcCc-cEEEEEeeccCCCccccCCc
Q 010256 90 FRYKT--EFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTN-DKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNG 165 (514)
Q Consensus 90 ~~~~~--~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~-d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~ 165 (514)
++. ...+ .+-+.++. +++|++++++.. -|.|.++-++. |.+......-.+
T Consensus 80 --~ln~~~~~g--------------~~p~yvsv--d~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h-------- 133 (346)
T COG2706 80 --FLNRQTLPG--------------SPPCYVSV--DEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKH-------- 133 (346)
T ss_pred --EeeccccCC--------------CCCeEEEE--CCCCCEEEEEEccCceEEEEEcccCCccccceeeeec--------
Confidence 111 1122 22367777 788889998854 47888888754 432222111100
Q ss_pred ceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCC
Q 010256 166 PIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG 245 (514)
Q Consensus 166 ~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 245 (514)
...... . ...+..+....+.|++
T Consensus 134 --------------------------------------------------~g~~p~--~-----rQ~~~h~H~a~~tP~~ 156 (346)
T COG2706 134 --------------------------------------------------TGSGPH--E-----RQESPHVHSANFTPDG 156 (346)
T ss_pred --------------------------------------------------CCCCCC--c-----cccCCccceeeeCCCC
Confidence 000000 0 1111336678899999
Q ss_pred CEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEec-CCeEEEEEcCCCccccccc
Q 010256 246 ETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIRLIDMRQSALCDTHS 322 (514)
Q Consensus 246 ~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~ 322 (514)
++|++. .--.|.+|++..++.... .+..+ ......+.|.|+|++ ++.+..++ +++|.+|...........+
T Consensus 157 ~~l~v~DLG~Dri~~y~~~dg~L~~~----~~~~v-~~G~GPRHi~FHpn~-k~aY~v~EL~stV~v~~y~~~~g~~~~l 230 (346)
T COG2706 157 RYLVVPDLGTDRIFLYDLDDGKLTPA----DPAEV-KPGAGPRHIVFHPNG-KYAYLVNELNSTVDVLEYNPAVGKFEEL 230 (346)
T ss_pred CEEEEeecCCceEEEEEcccCccccc----ccccc-CCCCCcceEEEcCCC-cEEEEEeccCCEEEEEEEcCCCceEEEe
Confidence 999987 466799999985543221 11122 345667999999999 66665555 9999999998742111111
Q ss_pred cceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC--CeEEEEEccCCCCceeeeeeccccccccccccccCCccc
Q 010256 323 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFD 400 (514)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (514)
+....-. .-+.+ .....+|.++|||++|+++.. ..|.+|.+...+..+..+........ ..+
T Consensus 231 Q~i~tlP-----~dF~g-~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~---------~PR- 294 (346)
T COG2706 231 QTIDTLP-----EDFTG-TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQ---------FPR- 294 (346)
T ss_pred eeeccCc-----cccCC-CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCc---------CCc-
Confidence 1111100 00111 246788999999999999754 68999998864444433332211100 001
Q ss_pred eeeEEEcCCCCEEEEEeCC-CcEEEEecCC
Q 010256 401 KFECCLSGDGGRVATGSYS-NLFRVFGCSE 429 (514)
Q Consensus 401 v~~~~~s~~~~~l~s~~~d-g~i~iwd~~~ 429 (514)
...|++.|++|+++..+ ..|.+|....
T Consensus 295 --~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 295 --DFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred --cceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 68899999999887754 5688887754
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-11 Score=113.13 Aligned_cols=325 Identities=11% Similarity=0.063 Sum_probs=178.9
Q ss_pred cEEE-EeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCC
Q 010256 127 ALYL-LSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (514)
Q Consensus 127 ~~l~-s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 205 (514)
++++ +-..++.|.+.|..+.+........... ...+.++|||+.+ ++.+.|+
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~---------------h~~~~~s~Dgr~~------------yv~~rdg 58 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAP---------------HAGLKFSPDGRYL------------YVANRDG 58 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTE---------------EEEEE-TT-SSEE------------EEEETTS
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCc---------------eeEEEecCCCCEE------------EEEcCCC
Confidence 3554 4467899999999998877666543211 0156789999988 7778899
Q ss_pred cEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCC
Q 010256 206 SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTE 283 (514)
Q Consensus 206 ~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 283 (514)
.|.++| +...+.. ... .-.....++++++||++++++ ..+.+.++|.++.+....+ ............
T Consensus 59 ~vsviD-~~~~~~v------~~i--~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I-~~~~~~~~~~~~ 128 (369)
T PF02239_consen 59 TVSVID-LATGKVV------ATI--KVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTI-PTGGMPVDGPES 128 (369)
T ss_dssp EEEEEE-TTSSSEE------EEE--E-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEE-E--EE-TTTS--
T ss_pred eEEEEE-CCcccEE------EEE--ecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeec-ccccccccccCC
Confidence 999999 5444321 111 112345789999999999987 6999999999876655433 111111111345
Q ss_pred ceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe--C
Q 010256 284 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y 361 (514)
Q Consensus 284 ~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~ 361 (514)
.+.++..+|..+.++++--..+.|.+.|....+... ...++.. .......|+|++++++++. .
T Consensus 129 Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~--~~~i~~g-------------~~~~D~~~dpdgry~~va~~~s 193 (369)
T PF02239_consen 129 RVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK--VTTIKVG-------------RFPHDGGFDPDGRYFLVAANGS 193 (369)
T ss_dssp -EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE--EEEEE---------------TTEEEEEE-TTSSEEEEEEGGG
T ss_pred CceeEEecCCCCEEEEEEccCCeEEEEEeccccccc--eeeeccc-------------ccccccccCcccceeeeccccc
Confidence 778888888883344444455888888876643210 1122211 3567789999999988753 3
Q ss_pred CeEEEEEccCCCCceeeeeecccc-ccccccccccCCccceeeEEE--cCCCCEEEEEeCCCcEEEEecCCCceeeeeec
Q 010256 362 MTLKLWDINMDSGPVATFQVHEHL-RPKLCDLYENDSIFDKFECCL--SGDGGRVATGSYSNLFRVFGCSEGSAESTTLE 438 (514)
Q Consensus 362 ~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 438 (514)
..|-++|.++ ++.+..+...... ......+.+-.. ...| ...+...++.-....+.+||.... +...+++
T Consensus 194 n~i~viD~~~-~k~v~~i~~g~~p~~~~~~~~php~~-----g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w-kvv~~I~ 266 (369)
T PF02239_consen 194 NKIAVIDTKT-GKLVALIDTGKKPHPGPGANFPHPGF-----GPVWATSGLGYFAIPLIGTDPVSVHDDYAW-KVVKTIP 266 (369)
T ss_dssp TEEEEEETTT-TEEEEEEE-SSSBEETTEEEEEETTT-----EEEEEEEBSSSSEEEEEE--TTT-STTTBT-SEEEEEE
T ss_pred ceeEEEeecc-ceEEEEeeccccccccccccccCCCc-----ceEEeeccccceecccccCCccccchhhcC-eEEEEEE
Confidence 7999999886 6555544321111 001111111110 1223 223333333333346667888765 3446666
Q ss_pred CCCcceeEEEECCCCCceeec----CCCCeEEEeeCCCCCccccCCcc-cccccceEEEEEcCCCCEEEEEe--cC-cEE
Q 010256 439 ASKNPMRRQVQTPSRPSRPLG----SLSGVVRRVKGADNSALDANGNA-FDFSMKLLHLAWHPSENSIACAA--SN-SLY 510 (514)
Q Consensus 439 ~~~~~v~~~~~~~~~~~l~s~----s~d~~v~i~~~~~~~~~~~~~~~-~~~~~~v~~~~~spd~~~l~~~~--~~-~~~ 510 (514)
....+ --+..+|+++++... .....|.+++...+.. .... ......+.++.|++||+.+.++. .+ .+.
T Consensus 267 ~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~---~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~ 342 (369)
T PF02239_consen 267 TQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKV---VKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIV 342 (369)
T ss_dssp -SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEE---EE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEE
T ss_pred CCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcce---eEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEE
Confidence 66556 567779999999887 5557888866554421 1111 01223499999999999877654 44 688
Q ss_pred EEeC
Q 010256 511 MYYA 514 (514)
Q Consensus 511 i~~~ 514 (514)
+|.+
T Consensus 343 v~D~ 346 (369)
T PF02239_consen 343 VYDA 346 (369)
T ss_dssp EEET
T ss_pred EEEC
Confidence 8764
|
... |
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-11 Score=117.05 Aligned_cols=169 Identities=10% Similarity=0.063 Sum_probs=100.1
Q ss_pred CeEEEEECCCCCEEEEe--cCC--eEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEec-CC--eE
Q 010256 235 HINSISNNSDGETFISA--DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KG--SI 307 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~-dg--~i 307 (514)
.+...+|+|||+.|+.. .++ .|.+||++++.. . .+..+........|+||| +.|+..+. +| .|
T Consensus 247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~--------~Lt~~~~~~~~~~~spDG-~~i~f~s~~~g~~~I 316 (435)
T PRK05137 247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-T--------RLTDSPAIDTSPSYSPDG-SQIVFESDRSGSPQL 316 (435)
T ss_pred cccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-E--------EccCCCCccCceeEcCCC-CEEEEEECCCCCCeE
Confidence 34567899999877643 444 477778875432 2 233345556778999999 66666553 33 57
Q ss_pred EEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-C---CeEEEEEccCCCCceeeeeecc
Q 010256 308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQVHE 383 (514)
Q Consensus 308 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~---~~i~iwd~~~~~~~~~~~~~~~ 383 (514)
.++|+.++... .+ ..+...+....|+|+|+.|+... + ..|.+||+.. .....+...
T Consensus 317 y~~d~~g~~~~-----~l------------t~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~--~~~~~lt~~- 376 (435)
T PRK05137 317 YVMNADGSNPR-----RI------------SFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG--SGERILTSG- 376 (435)
T ss_pred EEEECCCCCeE-----Ee------------ecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCC--CceEeccCC-
Confidence 77787665421 11 11123456688999999998743 2 3677888753 223333211
Q ss_pred ccccccccccccCCccceeeEEEcCCCCEEEEEeCC------CcEEEEecCCCceeeeeecCCCcceeEEEECC
Q 010256 384 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS------NLFRVFGCSEGSAESTTLEASKNPMRRQVQTP 451 (514)
Q Consensus 384 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 451 (514)
.. +....|+|||++|+..+.+ ..++++|+..+.. ..+.. ...+...+|+|
T Consensus 377 ~~---------------~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~--~~l~~-~~~~~~p~Wsp 432 (435)
T PRK05137 377 FL---------------VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE--REVPT-PGDASDPAWSP 432 (435)
T ss_pred CC---------------CCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce--EEccC-CCCccCcccCC
Confidence 11 1268999999998765432 2578888865433 23322 22344555554
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-09 Score=101.28 Aligned_cols=274 Identities=12% Similarity=0.164 Sum_probs=159.5
Q ss_pred cccceEEEEEcCCCCeEEEecC----CCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccc
Q 010256 34 EVDIISAIEFDKSGDHLATGDR----GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (514)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (514)
-....+.++++|++++|.+... +|.|..|++..... ....+.......
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g-------------------~L~~~~~~~~~g--------- 86 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG-------------------TLTLLNSVPSGG--------- 86 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT-------------------EEEEEEEEEESS---------
T ss_pred CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc-------------------eeEEeeeeccCC---------
Confidence 4456677999999999998876 57899999876410 001222222111
Q ss_pred ccccceeEEEEeeCCCCcEEEEee-CCCeEEEEEcCc-cEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccc
Q 010256 110 EIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~-~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 187 (514)
..-..++. ++++++|+++. .+|.|.++++.. +.+........... ..|+
T Consensus 87 ---~~p~~i~~--~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g-------------------~g~~----- 137 (345)
T PF10282_consen 87 ---SSPCHIAV--DPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEG-------------------SGPN----- 137 (345)
T ss_dssp ---SCEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEE-------------------EESS-----
T ss_pred ---CCcEEEEE--ecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCC-------------------CCCc-----
Confidence 33566777 67788888885 589999999986 44433322110000 0000
Q ss_pred cccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCeEEEEeccCCC
Q 010256 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISN 265 (514)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~ 265 (514)
. .........++.++|+++++++. ....|.+|+++...
T Consensus 138 ------------------------------------~----~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~ 177 (345)
T PF10282_consen 138 ------------------------------------P----DRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDT 177 (345)
T ss_dssp ------------------------------------T----TTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS
T ss_pred ------------------------------------c----cccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCC
Confidence 0 01112456789999999988886 56789999998654
Q ss_pred ceeee-eccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcC--CCccccccccceeccCCCCccceeecccc
Q 010256 266 QSFNI-VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR--QSALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (514)
Q Consensus 266 ~~~~~-~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (514)
..+.. ..+ .+ ......+.++|+|++..++++.-.++.|.++++. ++... ........... +.+ ..
T Consensus 178 ~~l~~~~~~---~~-~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~--~~~~~~~~~~~-----~~~-~~ 245 (345)
T PF10282_consen 178 GKLTPVDSI---KV-PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLT--EIQTISTLPEG-----FTG-EN 245 (345)
T ss_dssp -TEEEEEEE---EC-STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEE--EEEEEESCETT-----SCS-SS
T ss_pred ceEEEeecc---cc-ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCcee--EEEEeeecccc-----ccc-cC
Confidence 22211 000 11 2356689999999994444555568899999998 33221 11111110000 000 12
Q ss_pred ceeEEEEecCCCEEEEEeC--CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe-CC
Q 010256 343 SISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YS 419 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~d 419 (514)
....++++|||++|+++.. ..|.+|+++.....+..+..-.... .. -..++++|+|++|+++. .+
T Consensus 246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G---------~~---Pr~~~~s~~g~~l~Va~~~s 313 (345)
T PF10282_consen 246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGG---------KF---PRHFAFSPDGRYLYVANQDS 313 (345)
T ss_dssp SEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESS---------SS---EEEEEE-TTSSEEEEEETTT
T ss_pred CceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCC---------CC---ccEEEEeCCCCEEEEEecCC
Confidence 5788999999999998643 8999999953223333222111000 00 01799999999998776 66
Q ss_pred CcEEEEecC
Q 010256 420 NLFRVFGCS 428 (514)
Q Consensus 420 g~i~iwd~~ 428 (514)
+.|.+|++.
T Consensus 314 ~~v~vf~~d 322 (345)
T PF10282_consen 314 NTVSVFDID 322 (345)
T ss_dssp TEEEEEEEE
T ss_pred CeEEEEEEe
Confidence 789999774
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-12 Score=115.79 Aligned_cols=237 Identities=16% Similarity=0.155 Sum_probs=145.7
Q ss_pred eEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEE-----ecCCCcEEEEEecCCeEEEE
Q 010256 236 INSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF-----HPTHCNMLAYSSSKGSIRLI 310 (514)
Q Consensus 236 v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~-----~p~~~~~l~~~~~dg~i~~w 310 (514)
+....++-.|.+|+-.-...+++|+.+.......-++. ..+.+ ....+=+| .|.+ .-++.|-.-|.+.+.
T Consensus 126 ~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k--~~y~g--t~P~cHdfn~~~a~~~g-~dllIGf~tGqvq~i 200 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDK--REYKG--TSPTCHDFNSFTATPKG-LDLLIGFTTGQVQLI 200 (636)
T ss_pred eeeccccCCCCEEEEecCCeEEEEEccCcchhccchhh--hcccC--CCCceecccccccCCCC-cceEEeeccCceEEe
Confidence 34444555677887776677888988732222111110 01111 11122222 3555 456668888899998
Q ss_pred EcCCCccccccccceeccCCCCccceeeccccceeEEEEecCC--CEEEEEeCCeEEEEEccCC-------------CCc
Q 010256 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG--RHILSRDYMTLKLWDINMD-------------SGP 375 (514)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g--~~l~~~~~~~i~iwd~~~~-------------~~~ 375 (514)
|....+. .+.|..... -.+..++++.|-|.+ .++++-.+|.+++||.... +..
T Consensus 201 dp~~~~~----sklfne~r~--------i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~ 268 (636)
T KOG2394|consen 201 DPINFEV----SKLFNEERL--------INKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQ 268 (636)
T ss_pred cchhhHH----HHhhhhccc--------ccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCe
Confidence 8876322 222222211 012579999999854 4444445689999986431 001
Q ss_pred eeee--eeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCC
Q 010256 376 VATF--QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR 453 (514)
Q Consensus 376 ~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 453 (514)
.... +.+....+..+.....+ .|...+|+|||++||+.+.||.+||||..+. .+....+.......+++|+|||
T Consensus 269 f~i~t~ksk~~rNPv~~w~~~~g---~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~-eLlg~mkSYFGGLLCvcWSPDG 344 (636)
T KOG2394|consen 269 FAILTSKSKKTRNPVARWHIGEG---SINEFAFSPDGKYLATVSQDGFLRIFDFDTQ-ELLGVMKSYFGGLLCVCWSPDG 344 (636)
T ss_pred eEEeeeeccccCCccceeEeccc---cccceeEcCCCceEEEEecCceEEEeeccHH-HHHHHHHhhccceEEEEEcCCc
Confidence 1111 11111111112222223 3448999999999999999999999999875 4456677777888999999999
Q ss_pred CceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcC
Q 010256 454 PSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHP 496 (514)
Q Consensus 454 ~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 496 (514)
+||++|++|--|.+ |......+...-.+|.+.|..++|.|
T Consensus 345 KyIvtGGEDDLVtV---wSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 345 KYIVTGGEDDLVTV---WSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cEEEecCCcceEEE---EEeccceEEEeccccccceeeEeecc
Confidence 99999999999999 33332233344557899999999985
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.4e-12 Score=105.09 Aligned_cols=98 Identities=13% Similarity=0.227 Sum_probs=70.5
Q ss_pred cceeEEEEecCCCEEEE--Ee-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeC
Q 010256 342 ASISDIKFARNGRHILS--RD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 418 (514)
Q Consensus 342 ~~i~~~~~s~~g~~l~~--~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 418 (514)
++|.+++|+|+|+.+++ |. +..|.+||++ .+.+..+.... +..+.|+|+|++|++++.
T Consensus 60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~--~~~i~~~~~~~-----------------~n~i~wsP~G~~l~~~g~ 120 (194)
T PF08662_consen 60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK--GKKIFSFGTQP-----------------RNTISWSPDGRFLVLAGF 120 (194)
T ss_pred CceEEEEECcCCCEEEEEEccCCcccEEEcCc--ccEeEeecCCC-----------------ceEEEECCCCCEEEEEEc
Confidence 57999999999998765 33 3799999997 56666554221 127999999999998874
Q ss_pred C---CcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCC
Q 010256 419 S---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL 461 (514)
Q Consensus 419 d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~ 461 (514)
+ |.|.+||+.+.+.. .+.+ ...+..+.|+|+|+++++++.
T Consensus 121 ~n~~G~l~~wd~~~~~~i-~~~~--~~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 121 GNLNGDLEFWDVRKKKKI-STFE--HSDATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCCCcEEEEEECCCCEEe-eccc--cCcEEEEEEcCCCCEEEEEEe
Confidence 3 67999999965332 2222 223567788888888877754
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.1e-12 Score=107.53 Aligned_cols=225 Identities=16% Similarity=0.174 Sum_probs=133.8
Q ss_pred cCeEEEEECCCCC---EEEEecCCeEEEEeccCCCcee-----------------ee---------eccCCCc--ccccC
Q 010256 234 YHINSISNNSDGE---TFISADDLRINLWNLEISNQSF-----------------NI---------VDVKPAN--MEDLT 282 (514)
Q Consensus 234 ~~v~~~~~~~~~~---~l~s~~d~~i~iwd~~~~~~~~-----------------~~---------~~~~~~~--~~~~~ 282 (514)
..|+.+.|.++++ +|+++.|.+|++|.+....... ++ +...|.. -..|.
T Consensus 85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt 164 (433)
T KOG1354|consen 85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT 164 (433)
T ss_pred hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence 4566777776643 3444588888888776432211 00 0011111 13567
Q ss_pred CceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCC-C-EEEEEe
Q 010256 283 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-R-HILSRD 360 (514)
Q Consensus 283 ~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~-~l~~~~ 360 (514)
.-|.++.++.|+ ..+++ +.|=+|.+|++.-.... ....+... .-+...+.-|++..|+|.. . ++++.+
T Consensus 165 yhiNSIS~NsD~-Et~lS-ADdLRINLWnlei~d~s---FnIVDIKP-----~nmEeLteVITsaEFhp~~cn~f~YSSS 234 (433)
T KOG1354|consen 165 YHINSISVNSDK-ETFLS-ADDLRINLWNLEIIDQS---FNIVDIKP-----ANMEELTEVITSAEFHPHHCNVFVYSSS 234 (433)
T ss_pred eEeeeeeecCcc-ceEee-ccceeeeeccccccCCc---eeEEEccc-----cCHHHHHHHHhhhccCHhHccEEEEecC
Confidence 778999999998 56664 46789999998753322 11111110 0022233568999999943 3 333455
Q ss_pred CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCC
Q 010256 361 YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS 440 (514)
Q Consensus 361 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 440 (514)
.|+|++-|++...-+...-+..+........-+-.+.|..|..+.|+++|+||++-+. -+|++||+........+.+.|
T Consensus 235 KGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh 313 (433)
T KOG1354|consen 235 KGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVH 313 (433)
T ss_pred CCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeeh
Confidence 6999999998422111111111111111111122234446668999999999997654 689999996554555555544
Q ss_pred Cc------------c---eeEEEECCCCCceeecCCCCeEEEee
Q 010256 441 KN------------P---MRRQVQTPSRPSRPLGSLSGVVRRVK 469 (514)
Q Consensus 441 ~~------------~---v~~~~~~~~~~~l~s~s~d~~v~i~~ 469 (514)
.. . -..++|+.++.++++||-...+++..
T Consensus 314 ~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 314 EYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred HhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEec
Confidence 32 1 24678899999999999999999944
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.7e-10 Score=102.98 Aligned_cols=291 Identities=12% Similarity=0.092 Sum_probs=164.6
Q ss_pred EEEeeCC----CeEEEEEc--CccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCC
Q 010256 129 YLLSTND----KTIKLWKV--QEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPG 202 (514)
Q Consensus 129 l~s~~~d----~~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 202 (514)
+++|+.. +.|.+|++ .++++........ ...++-++++|+++.| .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~--------------~~~Ps~l~~~~~~~~L------------Y~~~ 55 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAE--------------GENPSWLAVSPDGRRL------------YVVN 55 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEE--------------SSSECCEEE-TTSSEE------------EEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecC--------------CCCCceEEEEeCCCEE------------EEEE
Confidence 3445444 78888887 5666554433211 1223377889999887 4333
Q ss_pred ----CCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeecc---
Q 010256 203 ----GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDV--- 273 (514)
Q Consensus 203 ----~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~--- 273 (514)
..+.|..|+ +........ ..... .........++++|++++|+++ .+|.|.++++............
T Consensus 56 e~~~~~g~v~~~~-i~~~~g~L~--~~~~~-~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~ 131 (345)
T PF10282_consen 56 EGSGDSGGVSSYR-IDPDTGTLT--LLNSV-PSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRH 131 (345)
T ss_dssp TTSSTTTEEEEEE-EETTTTEEE--EEEEE-EESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEES
T ss_pred ccccCCCCEEEEE-ECCCcceeE--Eeeee-ccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeeccc
Confidence 457888777 322211111 11111 1122345679999999999998 6999999999865443332110
Q ss_pred ---CCCcccccCCceEEEEEecCCCcEEEEEe-cCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 274 ---KPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 274 ---~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
.|...........++.++|++ +++++.. ....|.+|++............+..+ .....+.+.|
T Consensus 132 ~g~g~~~~rq~~~h~H~v~~~pdg-~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~-----------~G~GPRh~~f 199 (345)
T PF10282_consen 132 EGSGPNPDRQEGPHPHQVVFSPDG-RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVP-----------PGSGPRHLAF 199 (345)
T ss_dssp EEEESSTTTTSSTCEEEEEE-TTS-SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECS-----------TTSSEEEEEE
T ss_pred CCCCCcccccccccceeEEECCCC-CEEEEEecCCCEEEEEEEeCCCceEEEeeccccc-----------cCCCCcEEEE
Confidence 011111234567899999999 5555544 35689999997754211101111111 1246788999
Q ss_pred ecCCCEEEEEeC--CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe-CCCcEEEEe
Q 010256 350 ARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFG 426 (514)
Q Consensus 350 s~~g~~l~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd 426 (514)
+|++++++.... ++|.++++......+.....-..... . +... .....++++|||++|.++. .++.|.+|+
T Consensus 200 ~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~---~-~~~~--~~~~~i~ispdg~~lyvsnr~~~sI~vf~ 273 (345)
T PF10282_consen 200 SPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE---G-FTGE--NAPAEIAISPDGRFLYVSNRGSNSISVFD 273 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET---T-SCSS--SSEEEEEE-TTSSEEEEEECTTTEEEEEE
T ss_pred cCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccc---c-cccc--CCceeEEEecCCCEEEEEeccCCEEEEEE
Confidence 999999988643 89999999832222222211111000 0 0000 0123799999999987655 667899999
Q ss_pred cCCC-ceee--eeecCCCcceeEEEECCCCCceeecC-CCCeEEE
Q 010256 427 CSEG-SAES--TTLEASKNPMRRQVQTPSRPSRPLGS-LSGVVRR 467 (514)
Q Consensus 427 ~~~~-~~~~--~~~~~~~~~v~~~~~~~~~~~l~s~s-~d~~v~i 467 (514)
+... ..+. ..+.......+.+.++|++++|+++. .++.|.+
T Consensus 274 ~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~v 318 (345)
T PF10282_consen 274 LDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSV 318 (345)
T ss_dssp ECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred EecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEE
Confidence 9422 2221 33333344578999999999988775 4445555
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-11 Score=118.34 Aligned_cols=185 Identities=15% Similarity=0.137 Sum_probs=118.2
Q ss_pred ccCeEEEEECCCCCEEEEe-c---CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCC--e
Q 010256 233 DYHINSISNNSDGETFISA-D---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG--S 306 (514)
Q Consensus 233 ~~~v~~~~~~~~~~~l~s~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg--~ 306 (514)
...+...+|+|+|+.|+.+ . ...|++||+.+++... +..+...+.+++|+|++..++++.+.++ .
T Consensus 189 ~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~---------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~ 259 (417)
T TIGR02800 189 REPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK---------VASFPGMNGAPAFSPDGSKLAVSLSKDGNPD 259 (417)
T ss_pred CCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE---------eecCCCCccceEECCCCCEEEEEECCCCCcc
Confidence 3456778899999999876 3 2579999998654321 1223445667899999943444555554 5
Q ss_pred EEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC--C--eEEEEEccCCCCceeeeeec
Q 010256 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--M--TLKLWDINMDSGPVATFQVH 382 (514)
Q Consensus 307 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~--~i~iwd~~~~~~~~~~~~~~ 382 (514)
|.+||+.++... .+ ..+........|+|||+.|+..++ + .|.++|+.. ++ ...+..+
T Consensus 260 i~~~d~~~~~~~-----~l------------~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~-~~-~~~l~~~ 320 (417)
T TIGR02800 260 IYVMDLDGKQLT-----RL------------TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG-GE-VRRLTFR 320 (417)
T ss_pred EEEEECCCCCEE-----EC------------CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEEeecC
Confidence 888888776431 11 111123456789999998876543 3 577777764 33 3333322
Q ss_pred cccccccccccccCCccceeeEEEcCCCCEEEEEeCCC---cEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeec
Q 010256 383 EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN---LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG 459 (514)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 459 (514)
... .....|+|+|++|+.++.++ .|.+||+.++... .+... .......|+|++++|+..
T Consensus 321 ~~~---------------~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~--~l~~~-~~~~~p~~spdg~~l~~~ 382 (417)
T TIGR02800 321 GGY---------------NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER--VLTDT-GLDESPSFAPNGRMILYA 382 (417)
T ss_pred CCC---------------ccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE--EccCC-CCCCCceECCCCCEEEEE
Confidence 211 12688999999999887765 7899998875332 22222 223456899999988887
Q ss_pred CCCC
Q 010256 460 SLSG 463 (514)
Q Consensus 460 s~d~ 463 (514)
+.++
T Consensus 383 ~~~~ 386 (417)
T TIGR02800 383 TTRG 386 (417)
T ss_pred EeCC
Confidence 7654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.2e-10 Score=102.34 Aligned_cols=342 Identities=10% Similarity=0.101 Sum_probs=200.3
Q ss_pred cccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccc
Q 010256 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (514)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (514)
..-++..++|||.|.+|++....| |.+|.-..... +.+... .
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~---l~~~~~----------------------------------~ 72 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAK---LVRFRH----------------------------------P 72 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEccccchhh---eeeeec----------------------------------C
Confidence 345789999999999999987665 99998654331 111111 2
Q ss_pred ceeEEEEeeCCCCcEEEEee---------------CCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCcee
Q 010256 114 KINKIRWCQSANSALYLLST---------------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS 178 (514)
Q Consensus 114 ~v~~i~~~~~~~~~~l~s~~---------------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 178 (514)
.|..+.| ++++.+|.+=+ .++.+.+||..++.+...+.....+ ...+..+.
T Consensus 73 ~V~~~~f--SP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~------------~~~Wp~~k 138 (561)
T COG5354 73 DVKYLDF--SPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQP------------YLGWPVLK 138 (561)
T ss_pred Cceeccc--CcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCc------------ccccceee
Confidence 2444445 33344444432 2346999999999877665544222 11222567
Q ss_pred eccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCC--CEEEE-----e
Q 010256 179 YMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG--ETFIS-----A 251 (514)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s-----~ 251 (514)
|+.+.++. +.. ....+.++++ . ..... .+.. .-....|...+|+|.+ ..|+. .
T Consensus 139 ~s~~D~y~------------ARv-v~~sl~i~e~-t-~n~~~--~p~~---~lr~~gi~dFsisP~~n~~~la~~tPEk~ 198 (561)
T COG5354 139 FSIDDKYV------------ARV-VGSSLYIHEI-T-DNIEE--HPFK---NLRPVGILDFSISPEGNHDELAYWTPEKL 198 (561)
T ss_pred eeecchhh------------hhh-ccCeEEEEec-C-Ccccc--Cchh---hccccceeeEEecCCCCCceEEEEccccC
Confidence 88888775 322 4556777773 1 11111 1111 1123568888999863 34443 2
Q ss_pred -cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEec-----------CCeEEEEEcCCCcccc
Q 010256 252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-----------KGSIRLIDMRQSALCD 319 (514)
Q Consensus 252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~-----------dg~i~~wd~~~~~~~~ 319 (514)
..+++++|.+...... ... ++. ...=..+.|.+.| .+++.-.. ...+.|++++....
T Consensus 199 ~kpa~~~i~sIp~~s~l-~tk-----~lf--k~~~~qLkW~~~g-~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-- 267 (561)
T COG5354 199 NKPAMVRILSIPKNSVL-VTK-----NLF--KVSGVQLKWQVLG-KYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-- 267 (561)
T ss_pred CCCcEEEEEEccCCCee-eee-----eeE--eecccEEEEecCC-ceEEEEEEEeeecccceeccceEEEEeeccccc--
Confidence 5889999998744322 211 221 1222467788887 44432111 23466666653332
Q ss_pred ccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe---CCeEEEEEccCCCCceeeeeeccccccccccccccC
Q 010256 320 THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYEND 396 (514)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (514)
+.. ....++|...+|.|.++.+++.+ ...+.++|++. .....+... ..+
T Consensus 268 ---~V~------------~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~--Nl~~~~Pe~--~rN--------- 319 (561)
T COG5354 268 ---PVE------------KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG--NLRFYFPEQ--KRN--------- 319 (561)
T ss_pred ---cee------------ccccccceeeeecccCCceeEEecccccceeeccccc--ceEEecCCc--ccc---------
Confidence 111 12237899999999988877643 27889999984 433333322 222
Q ss_pred CccceeeEEEcCCCCEEEEEeCC---CcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCC------CCeEEE
Q 010256 397 SIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL------SGVVRR 467 (514)
Q Consensus 397 ~~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~------d~~v~i 467 (514)
.+.|+|.+++++.++-| |.+-+||..........+.+.. .+-+.|+||++++.+.-. |..++|
T Consensus 320 ------T~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l 391 (561)
T COG5354 320 ------TIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKL 391 (561)
T ss_pred ------cccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEE
Confidence 68899999999987765 6899999886533322444332 234679999999877643 333444
Q ss_pred eeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEe
Q 010256 468 VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 505 (514)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~ 505 (514)
+... +. .-...+.+.|.|.+++..+.+
T Consensus 392 ---~~v~-----g~---~~fel~~~~W~p~~~~~ttsS 418 (561)
T COG5354 392 ---WDVY-----GA---KVFELTNITWDPSGQYVTTSS 418 (561)
T ss_pred ---EEec-----Cc---hhhhhhhccccCCcccceeec
Confidence 1111 00 012567888988888766554
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.3e-11 Score=111.09 Aligned_cols=304 Identities=11% Similarity=0.159 Sum_probs=197.0
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
.++......|++|+....|+|+|+.||.+++-.+.+.......+. ++-......-.++.||+
T Consensus 10 ~iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g--------laa~snLsmNQtLeGH~---------- 71 (1189)
T KOG2041|consen 10 GIPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG--------LAAASNLSMNQTLEGHN---------- 71 (1189)
T ss_pred CCCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc--------cccccccchhhhhccCc----------
Confidence 345667899999999999999999999999999876553211111 11111233445789998
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
+.|..+.| +.+.+.|-++..+|.|.+|-+-.+...
T Consensus 72 --~sV~vvTW--Ne~~QKLTtSDt~GlIiVWmlykgsW~----------------------------------------- 106 (1189)
T KOG2041|consen 72 --ASVMVVTW--NENNQKLTTSDTSGLIIVWMLYKGSWC----------------------------------------- 106 (1189)
T ss_pred --ceEEEEEe--ccccccccccCCCceEEEEeeecccHH-----------------------------------------
Confidence 89999999 566678888899999999988766421
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
.+. .-...++-|.+++|+.||..++.. .||.|.+=.++ +.....
T Consensus 107 -------------------------EEM---------iNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-GNRIwg 151 (1189)
T KOG2041|consen 107 -------------------------EEM---------INNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-GNRIWG 151 (1189)
T ss_pred -------------------------HHH---------hhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec-cceecc
Confidence 110 002334668899999999999999 99999888776 333221
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccc-ccceeccCCCCccceeeccccceeEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH-SKLFEEQEAPGTRSFFTEIIASISDIK 348 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (514)
. .++ ......+.|++|. ..++.+-.+|.+.+||....-...-. ....... ..+......|..+.
T Consensus 152 K------eLk--g~~l~hv~ws~D~-~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~t------g~~s~~~~kia~i~ 216 (1189)
T KOG2041|consen 152 K------ELK--GQLLAHVLWSEDL-EQALFKKANGETHLYDNQGNFERKLEKDCEVNGT------GIFSNFPTKIAEIE 216 (1189)
T ss_pred h------hcc--hheccceeecccH-HHHHhhhcCCcEEEecccccHHHhhhhceEEeee------eeecCCCcccccee
Confidence 0 122 2234578899998 77777888999999997653211000 0000100 00111112244444
Q ss_pred Ee--------cCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCC
Q 010256 349 FA--------RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 419 (514)
Q Consensus 349 ~s--------~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 419 (514)
|. |+...|+.+-+ |++.|..-.++..++-.-.+ ..+....|+++|..||.++.|
T Consensus 217 w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg-----------------m~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 217 WNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG-----------------MKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred eccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc-----------------cEeecceecCCCcEEEEccCc
Confidence 43 46777777754 88887765543333322211 113478999999999988764
Q ss_pred ---------CcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 420 ---------NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 420 ---------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+.|.+|..- .....+++.....|+++.|-..|-.+|.+ .|+.+.+
T Consensus 280 ~da~~~~d~n~v~Fysp~--G~i~gtlkvpg~~It~lsWEg~gLriA~A-vdsfiyf 333 (1189)
T KOG2041|consen 280 SDADEPTDSNKVHFYSPY--GHIVGTLKVPGSCITGLSWEGTGLRIAIA-VDSFIYF 333 (1189)
T ss_pred ccccCccccceEEEeccc--hhheEEEecCCceeeeeEEcCCceEEEEE-ecceEEE
Confidence 467777654 34557788888889999987766655554 4666665
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.40 E-value=8e-11 Score=106.15 Aligned_cols=314 Identities=11% Similarity=0.107 Sum_probs=183.0
Q ss_pred eEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeE
Q 010256 38 ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 117 (514)
Q Consensus 38 V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~ 117 (514)
=+-+.|||-|.||+|--.-| |.+|--.+-.. ...| .| ..|.-
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r-----------------------~~RF-~H-------------p~Vq~ 254 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDR-----------------------IQRF-YH-------------PGVQF 254 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHH-----------------------HHhc-cC-------------CCcee
Confidence 35689999999999987776 88997432221 1111 12 44888
Q ss_pred EEEeeCCCCcEEEEee-----------CCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcc
Q 010256 118 IRWCQSANSALYLLST-----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (514)
Q Consensus 118 i~~~~~~~~~~l~s~~-----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 186 (514)
+.|+ |+.+||++=+ ....+.|||+.+|.....+..... ....+.-..||.|++.+
T Consensus 255 idfS--P~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~------------~~~~WP~frWS~DdKy~ 320 (698)
T KOG2314|consen 255 IDFS--PNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKS------------PYLKWPIFRWSHDDKYF 320 (698)
T ss_pred eecC--CccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCC------------CccccceEEeccCCcee
Confidence 8884 5556888743 226899999999987665544211 11233366899999986
Q ss_pred ccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--c----CCeEEEEe
Q 010256 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--D----DLRINLWN 260 (514)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~----d~~i~iwd 260 (514)
+.-.. .+|.||+ ...... ...+ .-.-..|....|+|.+++||.= . -..+-+-.
T Consensus 321 ------------Arm~~-~sisIyE-tpsf~l-ld~K------slki~gIr~FswsP~~~llAYwtpe~~~~parvtL~e 379 (698)
T KOG2314|consen 321 ------------ARMTG-NSISIYE-TPSFML-LDKK------SLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLME 379 (698)
T ss_pred ------------EEecc-ceEEEEe-cCceee-eccc------ccCCccccCcccCCCcceEEEEcccccCCcceEEEEe
Confidence 33222 6777776 211111 0111 1123678889999999888852 1 22344444
Q ss_pred ccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEE----------ecCCeEEEEEcCCCccccccccceeccCC
Q 010256 261 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS----------SSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (514)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~----------~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 330 (514)
+.+.+... .. ++ +.-.=..+-|-.+| .+|+.- +.-..+.|+.++..... +...+..
T Consensus 380 vPs~~~iR-t~-----nl--fnVsDckLhWQk~g-dyLcvkvdR~tK~~~~g~f~n~eIfrireKdIp---ve~velk-- 445 (698)
T KOG2314|consen 380 VPSKREIR-TK-----NL--FNVSDCKLHWQKSG-DYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIP---VEVVELK-- 445 (698)
T ss_pred cCccceee-ec-----cc--eeeeccEEEeccCC-cEEEEEEEeeccccccceEeeEEEEEeeccCCC---ceeeecc--
Confidence 44332221 10 11 11111233454555 444421 11223555666554432 2223322
Q ss_pred CCccceeeccccceeEEEEecCCCEEEE--EeC--CeEEEEEccCCCC---ceeeeeeccccccccccccccCCccceee
Q 010256 331 PGTRSFFTEIIASISDIKFARNGRHILS--RDY--MTLKLWDINMDSG---PVATFQVHEHLRPKLCDLYENDSIFDKFE 403 (514)
Q Consensus 331 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~--~~~--~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 403 (514)
..|...+|-|.|..+++ |.. .++.+|.+.+... .+..+.... ...
T Consensus 446 -----------e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~-----------------~N~ 497 (698)
T KOG2314|consen 446 -----------ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKF-----------------ANT 497 (698)
T ss_pred -----------hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccc-----------------cce
Confidence 57899999999988776 443 7899998874122 122222111 127
Q ss_pred EEEcCCCCEEEEE---eCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 404 CCLSGDGGRVATG---SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 404 ~~~s~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+.|+|.|++++.+ |..|.+.++|+........-...| ...+.+.|.|.|+|+++++.-...++
T Consensus 498 vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~wrhk~ 563 (698)
T KOG2314|consen 498 VFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSWRHKV 563 (698)
T ss_pred EEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-cccccceECCCCCEEEEeeehhhhcc
Confidence 8999999998865 456889999987422221222223 33467899999999999987765555
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.5e-10 Score=108.39 Aligned_cols=148 Identities=12% Similarity=0.146 Sum_probs=89.4
Q ss_pred eEEEEECCCCCEEEEe--cC--CeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEec-CC--eEE
Q 010256 236 INSISNNSDGETFISA--DD--LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KG--SIR 308 (514)
Q Consensus 236 v~~~~~~~~~~~l~s~--~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~-dg--~i~ 308 (514)
+.+++|+||++.|+.. .+ ..|++||+.++... .+..+........|+|++ +.|+..+. ++ .|.
T Consensus 236 ~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~---------~l~~~~~~~~~~~~s~dg-~~l~~~s~~~g~~~iy 305 (417)
T TIGR02800 236 NGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT---------RLTNGPGIDTEPSWSPDG-KSIAFTSDRGGSPQIY 305 (417)
T ss_pred ccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE---------ECCCCCCCCCCEEECCCC-CEEEEEECCCCCceEE
Confidence 3457899999877643 33 46888898754322 122233444567899999 66655544 33 577
Q ss_pred EEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-C---eEEEEEccCCCCceeeeeeccc
Q 010256 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-M---TLKLWDINMDSGPVATFQVHEH 384 (514)
Q Consensus 309 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~---~i~iwd~~~~~~~~~~~~~~~~ 384 (514)
++|+.+++.. .+ ..+......+.|+|+|++++.... + .|.+||+.. +. ...+.....
T Consensus 306 ~~d~~~~~~~-----~l------------~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~-~~-~~~l~~~~~ 366 (417)
T TIGR02800 306 MMDADGGEVR-----RL------------TFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG-GG-ERVLTDTGL 366 (417)
T ss_pred EEECCCCCEE-----Ee------------ecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC-CC-eEEccCCCC
Confidence 7777655421 11 111235667899999999987543 2 788888875 32 222222111
Q ss_pred cccccccccccCCccceeeEEEcCCCCEEEEEeCCC---cEEEEecC
Q 010256 385 LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN---LFRVFGCS 428 (514)
Q Consensus 385 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg---~i~iwd~~ 428 (514)
. ...+|+|||++|+..+.++ .+++.+..
T Consensus 367 ~----------------~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 367 D----------------ESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred C----------------CCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 1 1568999999888776554 35555544
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.3e-10 Score=96.15 Aligned_cols=232 Identities=14% Similarity=0.139 Sum_probs=148.2
Q ss_pred CeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEE-EEecC------CeE
Q 010256 235 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSK------GSI 307 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~-~~~~d------g~i 307 (514)
...+++|+.|...++.|.|.-.++|+.+--++... ..+....-.+..+-|-. ++++ .|+.+ ..+
T Consensus 7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~------r~~~~~G~~~veMLfR~---N~laLVGGg~~pky~pNkv 77 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESAS------RQFIDGGFKIVEMLFRS---NYLALVGGGSRPKYPPNKV 77 (346)
T ss_pred ceeEEEEccCCceEEEEecCceEEEecCchhhhhh------hccccCchhhhhHhhhh---ceEEEecCCCCCCCCCceE
Confidence 34569999999999999666689999873222110 01111112222333322 3333 34433 479
Q ss_pred EEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeecccccc
Q 010256 308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRP 387 (514)
Q Consensus 308 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~ 387 (514)
.|||=..... +..+.- ..+|.++.++++ .|++.-.++|.||....+-+.+..+.....+..
T Consensus 78 iIWDD~k~~~----i~el~f-------------~~~I~~V~l~r~--riVvvl~~~I~VytF~~n~k~l~~~et~~NPkG 138 (346)
T KOG2111|consen 78 IIWDDLKERC----IIELSF-------------NSEIKAVKLRRD--RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKG 138 (346)
T ss_pred EEEecccCcE----EEEEEe-------------ccceeeEEEcCC--eEEEEecCeEEEEEcCCChhheeeeecccCCCc
Confidence 9999333322 222221 257999999865 677777789999999854666666654443321
Q ss_pred ccccccccCCccceeeEEEcC--CCCEEEEEe-CCCcEEEEecCCCce-eeeeecCCCcceeEEEECCCCCceeecCCCC
Q 010256 388 KLCDLYENDSIFDKFECCLSG--DGGRVATGS-YSNLFRVFGCSEGSA-ESTTLEASKNPMRRQVQTPSRPSRPLGSLSG 463 (514)
Q Consensus 388 ~~~~~~~~~~~~~v~~~~~s~--~~~~l~s~~-~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~ 463 (514)
-++..| +..+||.-+ .-|.|+|-|+..... ....+..|.+.|.+++.+.+|..+||+|..|
T Consensus 139 ---------------lC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkG 203 (346)
T KOG2111|consen 139 ---------------LCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKG 203 (346)
T ss_pred ---------------eEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCc
Confidence 233333 344566433 558999999986544 2378899999999999999999999999999
Q ss_pred eEEE----eeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecCc-EEEEe
Q 010256 464 VVRR----VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNS-LYMYY 513 (514)
Q Consensus 464 ~v~i----~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~-~~i~~ 513 (514)
++-. .+|..+. |+.. -.-...|.+++|||++.+||++++.+ +-||.
T Consensus 204 TLIRIFdt~~g~~l~--E~RR--G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 204 TLIRIFDTEDGTLLQ--ELRR--GVDRADIYCIAFSPNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred EEEEEEEcCCCcEee--eeec--CCchheEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence 8654 3333333 1111 01257899999999999999999665 44543
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.6e-10 Score=107.07 Aligned_cols=167 Identities=14% Similarity=0.215 Sum_probs=95.0
Q ss_pred EEEECCCCCEEEEe--cCCe--EEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEe-cCC--eEEEE
Q 010256 238 SISNNSDGETFISA--DDLR--INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKG--SIRLI 310 (514)
Q Consensus 238 ~~~~~~~~~~l~s~--~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg--~i~~w 310 (514)
..+|+|||+.|+.. .++. |+++|+++++. . .+..+........|+|++ +.|+..+ .++ .|.++
T Consensus 266 ~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~--------~lt~~~~~~~~p~wSpDG-~~I~f~s~~~g~~~Iy~~ 335 (448)
T PRK04792 266 APRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-T--------RITRHRAIDTEPSWHPDG-KSLIFTSERGGKPQIYRV 335 (448)
T ss_pred CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-E--------ECccCCCCccceEECCCC-CEEEEEECCCCCceEEEE
Confidence 46799999887754 4554 77778875432 2 223344456778999999 5555444 344 45566
Q ss_pred EcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-C-C--eEEEEEccCCCCceeeeeeccccc
Q 010256 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-M--TLKLWDINMDSGPVATFQVHEHLR 386 (514)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~-~--~i~iwd~~~~~~~~~~~~~~~~~~ 386 (514)
|+.+++.. ..++.. ......+|+|||++|+..+ . + .|.++|+.. ++ ...+.... ..
T Consensus 336 dl~~g~~~---~Lt~~g--------------~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~-g~-~~~lt~~~-~d 395 (448)
T PRK04792 336 NLASGKVS---RLTFEG--------------EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET-GA-MQVLTSTR-LD 395 (448)
T ss_pred ECCCCCEE---EEecCC--------------CCCcCeeECCCCCEEEEEEecCCceEEEEEECCC-CC-eEEccCCC-CC
Confidence 76665431 001111 1234568999999988743 2 4 455566654 33 23332111 10
Q ss_pred cccccccccCCccceeeEEEcCCCCEEEEEeC-CC--cEEEEecCCCceeeeeecCCCcceeEEEECC
Q 010256 387 PKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SN--LFRVFGCSEGSAESTTLEASKNPMRRQVQTP 451 (514)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 451 (514)
....|+|||++|+..+. ++ .+++++.. +. ....+..+...+....|+|
T Consensus 396 ---------------~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~-~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 396 ---------------ESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GR-FKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred ---------------CCceECCCCCEEEEEEecCCceEEEEEECC-CC-ceEECcCCCCCcCCCccCC
Confidence 14689999998876553 33 36777764 32 2344544445555666665
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.6e-11 Score=111.70 Aligned_cols=215 Identities=12% Similarity=0.151 Sum_probs=124.6
Q ss_pred cCccCeEEEEECCCCCEEEEe--cCC--eEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCe
Q 010256 231 AHDYHINSISNNSDGETFISA--DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 306 (514)
Q Consensus 231 ~h~~~v~~~~~~~~~~~l~s~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~ 306 (514)
.+...+.+..|+|||+.|+.. .++ .|.+||+.+++.. .+ ..........+|+|+|..++++.+.++.
T Consensus 215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-~l--------t~~~g~~~~~~wSPDG~~La~~~~~~g~ 285 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-KV--------TSFPGINGAPRFSPDGKKLALVLSKDGQ 285 (448)
T ss_pred cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-Ee--------cCCCCCcCCeeECCCCCEEEEEEeCCCC
Confidence 445678889999999998875 333 5888898755432 11 1112233468999999434445666665
Q ss_pred --EEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC--C--eEEEEEccCCCCceeeee
Q 010256 307 --IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--M--TLKLWDINMDSGPVATFQ 380 (514)
Q Consensus 307 --i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~--~i~iwd~~~~~~~~~~~~ 380 (514)
|.++|+.+++.. . +..+.......+|+|||+.|+..++ + .|.++|+.. ++ ...+.
T Consensus 286 ~~Iy~~dl~tg~~~-----~------------lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~-g~-~~~Lt 346 (448)
T PRK04792 286 PEIYVVDIATKALT-----R------------ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS-GK-VSRLT 346 (448)
T ss_pred eEEEEEECCCCCeE-----E------------CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEEEe
Confidence 777788766531 1 1112234567899999998876432 3 456666654 33 33332
Q ss_pred eccccccccccccccCCccceeeEEEcCCCCEEEEEeC-CC--cEEEEecCCCceeeeeecCCCcceeEEEECCCCCcee
Q 010256 381 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SN--LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP 457 (514)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 457 (514)
..... ....+|+|||++|+..+. ++ .|.++|+.++... .+.... ......|+|+++.|+
T Consensus 347 ~~g~~---------------~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~--~lt~~~-~d~~ps~spdG~~I~ 408 (448)
T PRK04792 347 FEGEQ---------------NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ--VLTSTR-LDESPSVAPNGTMVI 408 (448)
T ss_pred cCCCC---------------CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE--EccCCC-CCCCceECCCCCEEE
Confidence 11111 015789999999886654 34 4566777766432 222221 223457999999887
Q ss_pred ecCCC-Ce--EEE--eeCCCCCccccCCcccccccceEEEEEcCC
Q 010256 458 LGSLS-GV--VRR--VKGADNSALDANGNAFDFSMKLLHLAWHPS 497 (514)
Q Consensus 458 s~s~d-~~--v~i--~~~~~~~~~~~~~~~~~~~~~v~~~~~spd 497 (514)
..+.+ +. +.+ .+|.... .+. ...+.+...+|+|-
T Consensus 409 ~~~~~~g~~~l~~~~~~G~~~~--~l~----~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 409 YSTTYQGKQVLAAVSIDGRFKA--RLP----AGQGEVKSPAWSPF 447 (448)
T ss_pred EEEecCCceEEEEEECCCCceE--ECc----CCCCCcCCCccCCC
Confidence 76544 33 333 2222221 111 13456778888873
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.6e-11 Score=115.67 Aligned_cols=149 Identities=15% Similarity=0.157 Sum_probs=120.7
Q ss_pred EEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcc
Q 010256 239 ISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL 317 (514)
Q Consensus 239 ~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~ 317 (514)
+.++++.-++++| .-+.|.+|+....+.. ..+.+|.+.|.++.++.+| .++++.|.|+.+|+|++.+.+.
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p--------~~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~ 209 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNKP--------IRLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSREV 209 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCCc--------ceecccCCceEEEEEccCC-cEEEEEecCcceeeeecccccc
Confidence 3456777788888 8999999998733322 2478999999999999999 8999999999999999998765
Q ss_pred ccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE-eCCeEEEEEccCCCCceeeeeeccccccccccccccC
Q 010256 318 CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYEND 396 (514)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (514)
.. ...-+|...+..+.|.|+ .++++ .|.+.++|+.. +..+..+..|...
T Consensus 210 ~~---------------~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~--~~~l~~y~~h~g~----------- 259 (967)
T KOG0974|consen 210 LG---------------CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN--GTQLEVYDEHSGK----------- 259 (967)
T ss_pred cC---------------cccccccceeEEEEeccc--eeEEeccceEEEEEecc--cceehhhhhhhhc-----------
Confidence 31 124578899999999998 66664 56999999776 6666777777642
Q ss_pred CccceeeEEEcCCCCEEEEEeCCCcEEEEecCC
Q 010256 397 SIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 397 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 429 (514)
.++.++..++.-.++|++.|+.+++|++..
T Consensus 260 ---~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 260 ---GIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ---ceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 245899999988999999999999999864
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.5e-10 Score=108.39 Aligned_cols=215 Identities=15% Similarity=0.156 Sum_probs=128.7
Q ss_pred ccCccCeEEEEECCCCCEEEEe--cC--CeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEE-EEecC
Q 010256 230 HAHDYHINSISNNSDGETFISA--DD--LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSK 304 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~~~l~s~--~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~-~~~~d 304 (514)
..+...+....|+|||+.|+.. .+ ..|.+|++.++... . +....+.+....|+|+| +.|+ +.+.+
T Consensus 195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~-~--------l~~~~g~~~~~~~SpDG-~~la~~~~~~ 264 (430)
T PRK00178 195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE-Q--------ITNFEGLNGAPAWSPDG-SKLAFVLSKD 264 (430)
T ss_pred ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE-E--------ccCCCCCcCCeEECCCC-CEEEEEEccC
Confidence 3455678899999999998765 33 46889999865432 1 12223344568999999 5555 55555
Q ss_pred C--eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC----CeEEEEEccCCCCceee
Q 010256 305 G--SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY----MTLKLWDINMDSGPVAT 378 (514)
Q Consensus 305 g--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~----~~i~iwd~~~~~~~~~~ 378 (514)
| .|.+||+.++... .+ ..+........|+|||+.|+..++ ..|.++|+.. ++ ...
T Consensus 265 g~~~Iy~~d~~~~~~~-----~l------------t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~-g~-~~~ 325 (430)
T PRK00178 265 GNPEIYVMDLASRQLS-----RV------------TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG-GR-AER 325 (430)
T ss_pred CCceEEEEECCCCCeE-----Ec------------ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC-CC-EEE
Confidence 5 5888898876531 11 112234556789999998876543 3566677764 33 233
Q ss_pred eeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCC-C--cEEEEecCCCceeeeeecCCCcceeEEEECCCCCc
Q 010256 379 FQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-N--LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPS 455 (514)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 455 (514)
+...... .....|+|||++|+..+.+ + .|.+||+.+++.. .+.. ........|+|+|++
T Consensus 326 lt~~~~~---------------~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~--~lt~-~~~~~~p~~spdg~~ 387 (430)
T PRK00178 326 VTFVGNY---------------NARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR--ILTD-TSLDESPSVAPNGTM 387 (430)
T ss_pred eecCCCC---------------ccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE--EccC-CCCCCCceECCCCCE
Confidence 3211110 0157899999999876543 3 5888999876433 2221 112235689999999
Q ss_pred eeecCCC-Ce--EEE--eeCCCCCccccCCcccccccceEEEEEcCC
Q 010256 456 RPLGSLS-GV--VRR--VKGADNSALDANGNAFDFSMKLLHLAWHPS 497 (514)
Q Consensus 456 l~s~s~d-~~--v~i--~~~~~~~~~~~~~~~~~~~~~v~~~~~spd 497 (514)
++..+.+ +. +.+ .+|.... .+. ...+.+...+|+|-
T Consensus 388 i~~~~~~~g~~~l~~~~~~g~~~~--~l~----~~~g~~~~p~ws~~ 428 (430)
T PRK00178 388 LIYATRQQGRGVLMLVSINGRVRL--PLP----TAQGEVREPSWSPY 428 (430)
T ss_pred EEEEEecCCceEEEEEECCCCceE--ECc----CCCCCcCCCccCCC
Confidence 8877654 33 333 2222111 111 13456777888874
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.3e-09 Score=104.59 Aligned_cols=167 Identities=11% Similarity=0.140 Sum_probs=96.8
Q ss_pred EEEECCCCCEEEEe--cCC--eEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEe-cCC--eEEEE
Q 010256 238 SISNNSDGETFISA--DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKG--SIRLI 310 (514)
Q Consensus 238 ~~~~~~~~~~l~s~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg--~i~~w 310 (514)
..+|+|||+.|+.. .++ .|++||++++.. . .+..+........|+|++ +.++..+ .++ .|.++
T Consensus 247 ~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~-~--------~lt~~~~~~~~~~~spDg-~~i~f~s~~~g~~~iy~~ 316 (430)
T PRK00178 247 APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL-S--------RVTNHPAIDTEPFWGKDG-RTLYFTSDRGGKPQIYKV 316 (430)
T ss_pred CeEECCCCCEEEEEEccCCCceEEEEECCCCCe-E--------EcccCCCCcCCeEECCCC-CEEEEEECCCCCceEEEE
Confidence 47799999887743 344 688889885432 2 122334445678899999 5555444 344 56667
Q ss_pred EcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe--C--CeEEEEEccCCCCceeeeeeccccc
Q 010256 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y--MTLKLWDINMDSGPVATFQVHEHLR 386 (514)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~--~~i~iwd~~~~~~~~~~~~~~~~~~ 386 (514)
|+.+++.. . ..+.. .......|+|+|+.|+... + ..|.+||+.+ ++ ...+... ...
T Consensus 317 d~~~g~~~-~--lt~~~--------------~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t-g~-~~~lt~~-~~~ 376 (430)
T PRK00178 317 NVNGGRAE-R--VTFVG--------------NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR-GS-VRILTDT-SLD 376 (430)
T ss_pred ECCCCCEE-E--eecCC--------------CCccceEECCCCCEEEEEEccCCceEEEEEECCC-CC-EEEccCC-CCC
Confidence 77665531 0 01111 1234578999999998753 2 3578888875 33 2333211 110
Q ss_pred cccccccccCCccceeeEEEcCCCCEEEEEeCC---CcEEEEecCCCceeeeeecCCCcceeEEEECC
Q 010256 387 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTP 451 (514)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 451 (514)
....|+|||++|+..+.+ ..++++++... ....+..+...+....|+|
T Consensus 377 ---------------~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~--~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 377 ---------------ESPSVAPNGTMLIYATRQQGRGVLMLVSINGR--VRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred ---------------CCceECCCCCEEEEEEecCCceEEEEEECCCC--ceEECcCCCCCcCCCccCC
Confidence 156899999998866543 34667777533 2233444444455555655
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-07 Score=96.46 Aligned_cols=383 Identities=12% Similarity=0.136 Sum_probs=196.3
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccc----cccCCccceeeeeeccCCCcc------c
Q 010256 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDY----SMSRHPEFRYKTEFQSHEPEF------D 104 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~h~~~~------~ 104 (514)
...|.|++||||++.||..+.+|+|.+-... -..+.+....-...+. .+-| ++-.+.|+|...+- +
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~VsVGW---GkKeTQF~Gs~gK~aa~~~~~ 195 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMTRD-FDPISEVPLDSDDFGESKHVSVGW---GKKETQFHGSAGKAAARQLRD 195 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEecc-ceEEEEeecCccccCCCceeeecc---CcccCccCcchhhhhhhhccC
Confidence 4689999999999999999999998876532 1111110000000000 0000 00011122211110 0
Q ss_pred c-c-----cccccccceeEEEEeeCCCCcEEEEeeC------CCeEEEEEcCccEEEEEeeccCCCccccCCcceecccc
Q 010256 105 Y-L-----KSLEIEEKINKIRWCQSANSALYLLSTN------DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (514)
Q Consensus 105 ~-~-----~~~~~~~~v~~i~~~~~~~~~~l~s~~~------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (514)
. + ..+...+.-..|.| ..||.++|+.+. -+.+|||+-+ |++....+.. .+.-
T Consensus 196 p~~~~~d~~~~s~dd~~~~ISW--RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v--------~gLe----- 259 (928)
T PF04762_consen 196 PTVPKVDEGKLSWDDGRVRISW--RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPV--------DGLE----- 259 (928)
T ss_pred CCCCccccCccccCCCceEEEE--CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccC--------CCcc-----
Confidence 0 0 00112345677889 899999998753 2689999876 5544433311 0111
Q ss_pred cCCceeeccCCCccccccCCCCCCcccCCCC---CCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEE
Q 010256 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGG---VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 249 (514)
Q Consensus 173 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 249 (514)
..++|.|.|+.+ ++... ...|.+|. .+....++....+ ......|..++|++|+..||
T Consensus 260 --~~l~WrPsG~lI------------A~~q~~~~~~~VvFfE----rNGLrhgeF~l~~-~~~~~~v~~l~Wn~ds~iLA 320 (928)
T PF04762_consen 260 --GALSWRPSGNLI------------ASSQRLPDRHDVVFFE----RNGLRHGEFTLRF-DPEEEKVIELAWNSDSEILA 320 (928)
T ss_pred --CCccCCCCCCEE------------EEEEEcCCCcEEEEEe----cCCcEeeeEecCC-CCCCceeeEEEECCCCCEEE
Confidence 178999999987 33322 23444443 2221111111111 23456789999999999999
Q ss_pred Ee-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCC----Cccc----cc
Q 010256 250 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ----SALC----DT 320 (514)
Q Consensus 250 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~----~~~~----~~ 320 (514)
.. .|. |.+|...+-.-..+.. ..+. ....+..+.|+|..+..|...+.+|.+..+++.- +... ..
T Consensus 321 v~~~~~-vqLWt~~NYHWYLKqe----i~~~-~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g 394 (928)
T PF04762_consen 321 VWLEDR-VQLWTRSNYHWYLKQE----IRFS-SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNG 394 (928)
T ss_pred EEecCC-ceEEEeeCCEEEEEEE----EEcc-CCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCce
Confidence 98 555 9999887443222110 0111 2233445999998877888888877776655431 1100 00
Q ss_pred cc----------cceeccCCCCcccee-eccccceeEEEEecCCCEEEE-EeCCeEEEEEccCCCCc-------eeeeee
Q 010256 321 HS----------KLFEEQEAPGTRSFF-TEIIASISDIKFARNGRHILS-RDYMTLKLWDINMDSGP-------VATFQV 381 (514)
Q Consensus 321 ~~----------~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~g~~l~~-~~~~~i~iwd~~~~~~~-------~~~~~~ 381 (514)
.+ ..|....-|.+.... -....+|.+++|++++..+++ -+++.|.+|........ ...+..
T Consensus 395 ~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~ 474 (928)
T PF04762_consen 395 TVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISL 474 (928)
T ss_pred EEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhccc
Confidence 01 112211112221111 122468999999998876666 46799999986541111 011111
Q ss_pred ccccccccccccccCCccceeeEEEcCCCCEEEEEeCC---CcEEEEecCCCce--eeeeecCCCcceeEEEECCCCCce
Q 010256 382 HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSA--ESTTLEASKNPMRRQVQTPSRPSR 456 (514)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l 456 (514)
.... ... . ......+..++|..+..+++....+ ..+.+++...... .......-...+......++...+
T Consensus 475 ~~~~---~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (928)
T PF04762_consen 475 DSMD---ISD-S-ELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSL 549 (928)
T ss_pred cccc---ccc-c-ccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEE
Confidence 0000 000 0 0001113368888777776665554 6788888743321 112222223344444444444435
Q ss_pred eecCCCCeEEE
Q 010256 457 PLGSLSGVVRR 467 (514)
Q Consensus 457 ~s~s~d~~v~i 467 (514)
+.-..||.+..
T Consensus 550 ~~q~~~G~v~~ 560 (928)
T PF04762_consen 550 YIQTNDGKVFQ 560 (928)
T ss_pred EEEECCCEEEE
Confidence 55556777765
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-09 Score=99.24 Aligned_cols=146 Identities=12% Similarity=0.154 Sum_probs=114.1
Q ss_pred CCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccc
Q 010256 244 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS 322 (514)
Q Consensus 244 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 322 (514)
+...++-| ..|.|.+|+...++....+ .-..|.+.|.++.++.+- ..|.+++.|+.+..|+...... +
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~------st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~----~ 137 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKL------STDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVI----I 137 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEE------ecCCCCCcceeeeccccc-CceEecCCceeEEEEeccccee----e
Confidence 44567778 8999999999866655443 335689999999999887 7899999999999999988765 3
Q ss_pred cceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCcccee
Q 010256 323 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKF 402 (514)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 402 (514)
+.++... ..+.+++.+|||..+++++. .|++||+.+ .+.+.++.+|...++
T Consensus 138 ~~~~~~~------------~~~~sl~is~D~~~l~~as~-~ik~~~~~~-kevv~~ftgh~s~v~--------------- 188 (541)
T KOG4547|consen 138 RIWKEQK------------PLVSSLCISPDGKILLTASR-QIKVLDIET-KEVVITFTGHGSPVR--------------- 188 (541)
T ss_pred eeeccCC------------CccceEEEcCCCCEEEeccc-eEEEEEccC-ceEEEEecCCCcceE---------------
Confidence 4444333 46899999999999998764 899999998 999999999998765
Q ss_pred eEEEcCC-----CCEEEE-EeCCCcEEEEecCC
Q 010256 403 ECCLSGD-----GGRVAT-GSYSNLFRVFGCSE 429 (514)
Q Consensus 403 ~~~~s~~-----~~~l~s-~~~dg~i~iwd~~~ 429 (514)
++.|..+ |.++.+ ...+.-+.+|-+..
T Consensus 189 t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 189 TLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 6777665 666554 44556677887654
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=9e-10 Score=91.65 Aligned_cols=210 Identities=16% Similarity=0.129 Sum_probs=131.9
Q ss_pred cceeEEEEeeCCCC-c-EEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 113 EKINKIRWCQSANS-A-LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 113 ~~v~~i~~~~~~~~-~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..+..+.|+..+.+ . .++-+..+|.|.++..........+..- ...... ..-+.++.|++.+..+
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~l----s~~ki~-----~~~~lslD~~~~~~~i---- 136 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGL----SSKKIS-----VVEALSLDISTSGTKI---- 136 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeeccc----chhhhh-----heeeeEEEeeccCceE----
Confidence 56788888764433 3 3555678899999987654432222111 000000 0012266788888777
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC-CCEEEEe-cCCeEEEEeccCCCcee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQSF 268 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~ 268 (514)
+++..+|.+.+-+ ..+. ..+..+ ..+.|..+++-..|+.. .+.+.+| +|+.+..||++.++..+
T Consensus 137 --------~vs~s~G~~~~v~---~t~~--~le~vq-~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 137 --------FVSDSRGSISGVY---ETEM--VLEKVQ-TWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred --------EEEcCCCcEEEEe---ccee--eeeecc-cccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 8888888877433 1111 111111 24789999999999764 5677888 99999999999555332
Q ss_pred eeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEE
Q 010256 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (514)
Q Consensus 269 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (514)
. ....-|...|.+|.-+|..+.++++|+.|-.|++||.|+-... + ++. ...+.|..+.
T Consensus 203 ~------~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP---l--~~~-----------~v~GGVWRi~ 260 (339)
T KOG0280|consen 203 W------HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP---L--FKA-----------KVGGGVWRIK 260 (339)
T ss_pred e------ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc---c--ccC-----------ccccceEEEE
Confidence 2 1345588899999998876689999999999999999964321 1 111 1126899999
Q ss_pred EecC--CCEEEEEeCCeEEEEEccC
Q 010256 349 FARN--GRHILSRDYMTLKLWDINM 371 (514)
Q Consensus 349 ~s~~--g~~l~~~~~~~i~iwd~~~ 371 (514)
++|. +++|+++-..-.+|-+...
T Consensus 261 ~~p~~~~~lL~~CMh~G~ki~~~~~ 285 (339)
T KOG0280|consen 261 HHPEIFHRLLAACMHNGAKILDSSD 285 (339)
T ss_pred ecchhhhHHHHHHHhcCceEEEecc
Confidence 9984 3344444333345555543
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.7e-10 Score=100.57 Aligned_cols=115 Identities=17% Similarity=0.267 Sum_probs=91.2
Q ss_pred ccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEE
Q 010256 230 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 308 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~ 308 (514)
..|.+.|.++.++.+-..|.++ .|+.+..|+..... .+++ .......+.+++.+||+ ..+++++ +.|+
T Consensus 99 ~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~-~~~~-------~~~~~~~~~sl~is~D~-~~l~~as--~~ik 167 (541)
T KOG4547|consen 99 DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV-IIRI-------WKEQKPLVSSLCISPDG-KILLTAS--RQIK 167 (541)
T ss_pred CCCCCcceeeecccccCceEecCCceeEEEEecccce-eeee-------eccCCCccceEEEcCCC-CEEEecc--ceEE
Confidence 5788999999999998889988 99999999998443 3333 34456678899999998 7888776 6999
Q ss_pred EEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecC-----CCEEEEEeC--CeEEEEEccC
Q 010256 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN-----GRHILSRDY--MTLKLWDINM 371 (514)
Q Consensus 309 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-----g~~l~~~~~--~~i~iwd~~~ 371 (514)
+||+++++.+ ..|++|.++|++++|--+ |.++.++.. ..+.+|-+..
T Consensus 168 ~~~~~~kevv----------------~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 168 VLDIETKEVV----------------ITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEccCceEE----------------EEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9999998873 236778899999999876 888888543 5677777654
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.6e-09 Score=102.55 Aligned_cols=221 Identities=15% Similarity=0.094 Sum_probs=122.1
Q ss_pred CccCeEEEEECCCCCEEE---Ee-cC--CeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEe-cC
Q 010256 232 HDYHINSISNNSDGETFI---SA-DD--LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SK 304 (514)
Q Consensus 232 h~~~v~~~~~~~~~~~l~---s~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~d 304 (514)
.......-.|+|||+.++ +. .+ ..|.+.++..++.. .+ ....+.....+|+||| +.|+..+ .+
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~l--------t~~~g~~~~p~wSPDG-~~Laf~s~~~ 252 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KI--------LALQGNQLMPTFSPRK-KLLAFISDRY 252 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-Ee--------ecCCCCccceEECCCC-CEEEEEECCC
Confidence 334566789999987522 33 33 46777788754322 22 2233444568999999 5665544 23
Q ss_pred C----eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC--CeEEEEE--ccCCCCce
Q 010256 305 G----SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWD--INMDSGPV 376 (514)
Q Consensus 305 g----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~iwd--~~~~~~~~ 376 (514)
| .+.+|++..+... ...+.. .+..+.....+|+|||+.|+..++ +...||. +...+...
T Consensus 253 g~~di~~~~~~~~~g~~g-~~~~lt------------~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~ 319 (428)
T PRK01029 253 GNPDLFIQSFSLETGAIG-KPRRLL------------NEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP 319 (428)
T ss_pred CCcceeEEEeecccCCCC-cceEee------------cCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce
Confidence 3 3444666543110 001111 111123466899999998887543 5455554 43212223
Q ss_pred eeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCC---CcEEEEecCCCceeeeeecCCCcceeEEEECCCC
Q 010256 377 ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR 453 (514)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 453 (514)
..+...... +....|+|||+.|+..+.+ ..|++||+.+++.. .+......+....|+||+
T Consensus 320 ~~lt~~~~~---------------~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~--~Lt~~~~~~~~p~wSpDG 382 (428)
T PRK01029 320 RLLTKKYRN---------------SSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY--QLTTSPENKESPSWAIDS 382 (428)
T ss_pred EEeccCCCC---------------ccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE--EccCCCCCccceEECCCC
Confidence 333322211 1268999999998866543 46999999887543 333333456678999999
Q ss_pred CceeecCC-C--CeEEEe--eCCCCCccccCCcccccccceEEEEEcCCC
Q 010256 454 PSRPLGSL-S--GVVRRV--KGADNSALDANGNAFDFSMKLLHLAWHPSE 498 (514)
Q Consensus 454 ~~l~s~s~-d--~~v~i~--~~~~~~~~~~~~~~~~~~~~v~~~~~spd~ 498 (514)
+.|+..+. + ..+.++ ++.+.. .+ ....+.+...+|+|-.
T Consensus 383 ~~L~f~~~~~g~~~L~~vdl~~g~~~--~L----t~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 383 LHLVYSAGNSNESELYLISLITKKTR--KI----VIGSGEKRFPSWGAFP 426 (428)
T ss_pred CEEEEEECCCCCceEEEEECCCCCEE--Ee----ecCCCcccCceecCCC
Confidence 98875433 2 334442 222221 11 1124556778888754
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.8e-07 Score=96.06 Aligned_cols=349 Identities=13% Similarity=0.141 Sum_probs=189.0
Q ss_pred cccceEEEEEcCCCCeEEEecCCCeEEEEEe----cCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccc
Q 010256 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFER----TDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (514)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (514)
..+.|.++.+-++...|+.+..+|.|.+... .+... .....+
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~---------------------E~VG~v------------- 119 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI---------------------EIVGSV------------- 119 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee---------------------EEEEEE-------------
Confidence 3478999999999999999999999999933 22221 011111
Q ss_pred ccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcC----c---------c--EEE------EEeeccCCCccc-------
Q 010256 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQ----E---------K--KVK------KVFDWNVHPEKA------- 161 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~----~---------~--~~~------~~~~~~~~~~~~------- 161 (514)
+..|.+++| +||+..|+.++.++++.+-.-. . | +.. +..+++......
T Consensus 120 --d~GI~a~~W--SPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~ 195 (928)
T PF04762_consen 120 --DSGILAASW--SPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRD 195 (928)
T ss_pred --cCcEEEEEE--CCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccC
Confidence 277999999 5677799999888888775321 0 0 000 011111111111
Q ss_pred -----cCCcceecccccCCceeeccCCCccccccCCCCCCcccCCC------CCCcEEeceeeccccccccccccccccc
Q 010256 162 -----AGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPG------GVSSLRLPVVVTSQETNLVAGCRRIYAH 230 (514)
Q Consensus 162 -----~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------~~~~i~i~~~~~~~~~~~~~~~~~~~~~ 230 (514)
...+.+. .+.....++|..||+++ ++.. ....+|+|+ .+....... .
T Consensus 196 p~~~~~d~~~~s-~dd~~~~ISWRGDG~yF------------AVss~~~~~~~~R~iRVy~----ReG~L~stS-----E 253 (928)
T PF04762_consen 196 PTVPKVDEGKLS-WDDGRVRISWRGDGEYF------------AVSSVEPETGSRRVIRVYS----REGELQSTS-----E 253 (928)
T ss_pred CCCCccccCccc-cCCCceEEEECCCCcEE------------EEEEEEcCCCceeEEEEEC----CCceEEecc-----c
Confidence 0011222 23344478899999987 4333 235778777 443211111 1
Q ss_pred cCccCeEEEEECCCCCEEEEe-c---CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCe
Q 010256 231 AHDYHINSISNNSDGETFISA-D---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 306 (514)
Q Consensus 231 ~h~~~v~~~~~~~~~~~l~s~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~ 306 (514)
.-.+--.+++|-|.|++||+. . ...|.+|.-+ +....-+.+ .+......|..+.|++++ ..||....|.
T Consensus 254 ~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN--GLrhgeF~l---~~~~~~~~v~~l~Wn~ds-~iLAv~~~~~- 326 (928)
T PF04762_consen 254 PVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN--GLRHGEFTL---RFDPEEEKVIELAWNSDS-EILAVWLEDR- 326 (928)
T ss_pred cCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC--CcEeeeEec---CCCCCCceeeEEEECCCC-CEEEEEecCC-
Confidence 111223478999999999997 2 4567777654 222222211 122356778999999999 8888877555
Q ss_pred EEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCC-CEEEEEeC-CeEEEEEc----cCC-C------
Q 010256 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-RHILSRDY-MTLKLWDI----NMD-S------ 373 (514)
Q Consensus 307 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~~~-~~i~iwd~----~~~-~------ 373 (514)
|.+|-..+..-..+....+... ..+..+.|+|.. ..|..... +.+..+++ ... +
T Consensus 327 vqLWt~~NYHWYLKqei~~~~~-------------~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~ 393 (928)
T PF04762_consen 327 VQLWTRSNYHWYLKQEIRFSSS-------------ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDN 393 (928)
T ss_pred ceEEEeeCCEEEEEEEEEccCC-------------CCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCc
Confidence 9999887644221111111111 223447777733 22333322 44443332 110 0
Q ss_pred Cceeeeeecc--------ccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCcee-------eeee-
Q 010256 374 GPVATFQVHE--------HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE-------STTL- 437 (514)
Q Consensus 374 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-------~~~~- 437 (514)
..+..+.+.. ..++.....+.-.--..|.+++|++++..+++-..||.|.+|........ ...+
T Consensus 394 g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~ 473 (928)
T PF04762_consen 394 GTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSIS 473 (928)
T ss_pred eEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcc
Confidence 0111111111 11111111111111124568999999988999999999999985442111 0111
Q ss_pred ---------cCCCcceeEEEECCCCCceeecCCC
Q 010256 438 ---------EASKNPMRRQVQTPSRPSRPLGSLS 462 (514)
Q Consensus 438 ---------~~~~~~v~~~~~~~~~~~l~s~s~d 462 (514)
......+..++|..+..+++....+
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (928)
T PF04762_consen 474 LDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSD 507 (928)
T ss_pred cccccccccccccccEEEEEEeCCCEEEEEEecC
Confidence 1123456778887777766666554
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.8e-09 Score=100.63 Aligned_cols=249 Identities=10% Similarity=0.098 Sum_probs=159.0
Q ss_pred cccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010256 229 AHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 307 (514)
Q Consensus 229 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i 307 (514)
+.||+..|.-+.|+...+.|.++ .+|.|.+|-+-.+.-.-+.+ -....+.|.+++|+.+| ..+.....||.|
T Consensus 67 LeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMi------NnRnKSvV~SmsWn~dG-~kIcIvYeDGav 139 (1189)
T KOG2041|consen 67 LEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMI------NNRNKSVVVSMSWNLDG-TKICIVYEDGAV 139 (1189)
T ss_pred hccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHh------hCcCccEEEEEEEcCCC-cEEEEEEccCCE
Confidence 58999999999999999999999 89999999987654433221 12246778999999999 889999999998
Q ss_pred EEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCC----ceeeeeec
Q 010256 308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSG----PVATFQVH 382 (514)
Q Consensus 308 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~----~~~~~~~~ 382 (514)
.+=.+...+... +.+++. -...+.|++|.+.++.+-. |.+.++|...+.. .-....+.
T Consensus 140 IVGsvdGNRIwg---KeLkg~--------------~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~t 202 (1189)
T KOG2041|consen 140 IVGSVDGNRIWG---KELKGQ--------------LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGT 202 (1189)
T ss_pred EEEeeccceecc---hhcchh--------------eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeee
Confidence 887766554321 122221 2457899999988877644 8999999763110 00111111
Q ss_pred cc---cccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeec
Q 010256 383 EH---LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG 459 (514)
Q Consensus 383 ~~---~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 459 (514)
.. ...++....++... -.-.-||...|+.+-..|++.|..-.+.... ..+... -.+....|+++|.+||.+
T Consensus 203 g~~s~~~~kia~i~w~~g~----~~~v~pdrP~lavcy~nGr~QiMR~eND~~P-vv~dtg-m~~vgakWnh~G~vLAvc 276 (1189)
T KOG2041|consen 203 GIFSNFPTKIAEIEWNTGP----YQPVPPDRPRLAVCYANGRMQIMRSENDPEP-VVVDTG-MKIVGAKWNHNGAVLAVC 276 (1189)
T ss_pred eeecCCCccccceeeccCc----cccCCCCCCEEEEEEcCceehhhhhcCCCCC-eEEecc-cEeecceecCCCcEEEEc
Confidence 10 01111111111110 1122467888999999999999876654332 233222 456688999999999999
Q ss_pred CCCCe---------EEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecCcEEE
Q 010256 460 SLSGV---------VRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYM 511 (514)
Q Consensus 460 s~d~~---------v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~i 511 (514)
+.|.- |.++. +.+ .+.+..--....|+.+.|--.|-.||.+.+.-+++
T Consensus 277 G~~~da~~~~d~n~v~Fys---p~G-~i~gtlkvpg~~It~lsWEg~gLriA~Avdsfiyf 333 (1189)
T KOG2041|consen 277 GNDSDADEPTDSNKVHFYS---PYG-HIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYF 333 (1189)
T ss_pred cCcccccCccccceEEEec---cch-hheEEEecCCceeeeeEEcCCceEEEEEecceEEE
Confidence 87632 22210 000 01111112467899999999999999887774443
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.6e-10 Score=108.34 Aligned_cols=196 Identities=15% Similarity=0.107 Sum_probs=141.0
Q ss_pred CCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC
Q 010256 282 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY 361 (514)
Q Consensus 282 ~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 361 (514)
...+....+.-.. ..++.++.+..+.+||...+....+ ....+ +..+ ....-+.++++.-++++|+-
T Consensus 87 s~wi~g~~l~~e~-k~i~l~~~~ns~~i~d~~~~~~~~~----i~~~e----r~~l----~~~~~~g~s~~~~~i~~gsv 153 (967)
T KOG0974|consen 87 SDWIFGAKLFEEN-KKIALVTSRNSLLIRDSKNSSVLSK----IQSDE----RCTL----YSSLIIGDSAEELYIASGSV 153 (967)
T ss_pred cccccccchhhhc-ceEEEEEcCceEEEEecccCceehh----cCCCc----eEEE----EeEEEEeccCcEEEEEeccc
Confidence 3444445555555 6888899999999999987665321 11100 0000 12333445667778888876
Q ss_pred -CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCC
Q 010256 362 -MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS 440 (514)
Q Consensus 362 -~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 440 (514)
+.|.+|+.....++. .+.+|++. ++++.|+-||+++++.|+|.++|+|++.+.+....+.-+|
T Consensus 154 ~~~iivW~~~~dn~p~-~l~GHeG~---------------iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgH 217 (967)
T KOG0974|consen 154 FGEIIVWKPHEDNKPI-RLKGHEGS---------------IFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGH 217 (967)
T ss_pred cccEEEEeccccCCcc-eecccCCc---------------eEEEEEccCCcEEEEEecCcceeeeecccccccCcccccc
Confidence 999999998533333 67888875 4599999999999999999999999999987666788899
Q ss_pred CcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCccccc-ccceEEEEEcCCCCEEEEEe-cCcEEEE
Q 010256 441 KNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDF-SMKLLHLAWHPSENSIACAA-SNSLYMY 512 (514)
Q Consensus 441 ~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~-~~~v~~~~~spd~~~l~~~~-~~~~~i~ 512 (514)
+..++++++.|. .++++++|.+.++. .....++. .+.+| .+.|..++.+++...+++++ +.++.+|
T Consensus 218 saRvw~~~~~~n--~i~t~gedctcrvW---~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~ 285 (967)
T KOG0974|consen 218 SARVWACCFLPN--RIITVGEDCTCRVW---GVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLW 285 (967)
T ss_pred cceeEEEEeccc--eeEEeccceEEEEE---ecccceeh-hhhhhhhcceeEEEEcCCceEEEeeccCcchhhh
Confidence 999999999999 99999999999993 11111122 22233 46789999999988888777 5555554
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.3e-10 Score=95.00 Aligned_cols=209 Identities=11% Similarity=0.197 Sum_probs=137.5
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
...-..++++++++++-..|+.|-.+|++.-+.+...-. ...+.+....|.
T Consensus 64 ~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfn-------------------km~~~r~~~~h~---------- 114 (404)
T KOG1409|consen 64 YHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFN-------------------KMTFLKDYLAHQ---------- 114 (404)
T ss_pred hhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhh-------------------hcchhhhhhhhh----------
Confidence 334568899999999999999999999999888753211 011233445565
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|..+-|. ..-+.+++.+.|..+.---.+.+....-..+... ++.+.+.-.
T Consensus 115 --~~v~~~if~--~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~----------------~t~~~~d~~-------- 166 (404)
T KOG1409|consen 115 --ARVSAIVFS--LTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETP----------------ASALQFDAL-------- 166 (404)
T ss_pred --cceeeEEec--CCceeEEEeccccceEEEeeccCCcccceEeecc----------------CCCCceeeE--------
Confidence 789999994 4445899999988776544444432111111100 001111100
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
+.+.|...+.+.+-.+.... -..... +.+|.+.+.+++|.+....|.+| .|..+.+||+--.... .
T Consensus 167 ------~~fvGd~~gqvt~lr~~~~~-----~~~i~~-~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~-~ 233 (404)
T KOG1409|consen 167 ------YAFVGDHSGQITMLKLEQNG-----CQLITT-FNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT-A 233 (404)
T ss_pred ------EEEecccccceEEEEEeecC-----CceEEE-EcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcce-e
Confidence 22556666666543311111 011112 37999999999999999999999 9999999999733322 2
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCc
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA 316 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~ 316 (514)
. .+.+|...|..+...+.- ..+.+++.||.|.+||++...
T Consensus 234 ~------el~gh~~kV~~l~~~~~t-~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 234 Y------ELQGHNDKVQALSYAQHT-RQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred e------eeccchhhhhhhhhhhhh-eeeeeccCCCeEEEEecccee
Confidence 1 467889999999888776 789999999999999997643
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.4e-10 Score=95.68 Aligned_cols=223 Identities=16% Similarity=0.136 Sum_probs=129.6
Q ss_pred cCeEEEEECCC---CCEEEEecCCeEEEEeccCCCc---------------------------------eeeeeccCCCc
Q 010256 234 YHINSISNNSD---GETFISADDLRINLWNLEISNQ---------------------------------SFNIVDVKPAN 277 (514)
Q Consensus 234 ~~v~~~~~~~~---~~~l~s~~d~~i~iwd~~~~~~---------------------------------~~~~~~~~~~~ 277 (514)
..|..+.|..+ ..+|+++.|.+|++|.+..... ...++..+|..
T Consensus 86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~r 165 (460)
T COG5170 86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCR 165 (460)
T ss_pred HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccce
Confidence 45677777654 3457777999999999864310 01112223321
Q ss_pred --ccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCC-
Q 010256 278 --MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR- 354 (514)
Q Consensus 278 --~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~- 354 (514)
...|...|.++.|+.|. ..++ .+.|=+|.+|++.-...... +..++.+. ......-|++..|+|...
T Consensus 166 vyaNaH~yhiNSiS~NsD~-et~l-SaDdLrINLWnl~i~D~sFn-IVDiKP~n-------meeLteVItSaeFhp~~cn 235 (460)
T COG5170 166 VYANAHPYHINSISFNSDK-ETLL-SADDLRINLWNLEIIDGSFN-IVDIKPHN-------MEELTEVITSAEFHPEMCN 235 (460)
T ss_pred eccccceeEeeeeeecCch-heee-eccceeeeeccccccCCceE-EEeccCcc-------HHHHHHHHhhcccCHhHcc
Confidence 13566778899999886 5555 45678999999875332211 11111111 222335688999999533
Q ss_pred -EEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCcee
Q 010256 355 -HILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 355 -~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
++++.+.|.|++-|++...-+...-...+.....+..-+-.+.+..|..+.|+++|+||++-+. -+|+|||+...+..
T Consensus 236 ~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~p 314 (460)
T COG5170 236 VFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNP 314 (460)
T ss_pred eEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCC
Confidence 4445566999999998422111111110000111111111122334558999999999987665 68999999876665
Q ss_pred eeeecCCC------------cce---eEEEECCCCCceeecCCCCeEEE
Q 010256 434 STTLEASK------------NPM---RRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 434 ~~~~~~~~------------~~v---~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
..+..-|. ..| ..+.|+.|.+.+++||-....-+
T Consensus 315 ikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgi 363 (460)
T COG5170 315 IKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGI 363 (460)
T ss_pred ceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceee
Confidence 56654332 222 35677888888888876655544
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.7e-08 Score=90.69 Aligned_cols=311 Identities=13% Similarity=0.087 Sum_probs=180.2
Q ss_pred cceEEEEEcCCCCeEEEecCCC---------------eEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCC
Q 010256 36 DIISAIEFDKSGDHLATGDRGG---------------RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHE 100 (514)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg---------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 100 (514)
..|..+.|||.++||.|=+..+ .+.+||..++..+ ..+.+-.
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv-----------------------~sf~~~~ 128 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIV-----------------------FSFNGIS 128 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeE-----------------------eeccccC
Confidence 4688899999999999865433 4899999887743 2232222
Q ss_pred Ccccccccccccccee-EEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceee
Q 010256 101 PEFDYLKSLEIEEKIN-KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSY 179 (514)
Q Consensus 101 ~~~~~~~~~~~~~~v~-~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 179 (514)
.. .... -+.| +-++.++|-. ....+.|+++ ++......... +....+. ...|
T Consensus 129 q~----------~~~Wp~~k~--s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~------lr~~gi~-------dFsi 181 (561)
T COG5354 129 QP----------YLGWPVLKF--SIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKN------LRPVGIL-------DFSI 181 (561)
T ss_pred Cc----------ccccceeee--eecchhhhhh-ccCeEEEEec-CCccccCchhh------cccccee-------eEEe
Confidence 00 0122 4567 3444455544 3457888887 33322110000 0011111 4556
Q ss_pred ccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--------
Q 010256 180 MANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-------- 251 (514)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-------- 251 (514)
+|.++.-.+. .-.--..+..+.+++|.|. ...... ...+.. -.=..+.|++.|++|+.-
T Consensus 182 sP~~n~~~la-----~~tPEk~~kpa~~~i~sIp-~~s~l~----tk~lfk---~~~~qLkW~~~g~~ll~l~~t~~ksn 248 (561)
T COG5354 182 SPEGNHDELA-----YWTPEKLNKPAMVRILSIP-KNSVLV----TKNLFK---VSGVQLKWQVLGKYLLVLVMTHTKSN 248 (561)
T ss_pred cCCCCCceEE-----EEccccCCCCcEEEEEEcc-CCCeee----eeeeEe---ecccEEEEecCCceEEEEEEEeeecc
Confidence 6665332100 0000124556677877732 111100 011101 111357788888887641
Q ss_pred ----cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEE--ecCCeEEEEEcCCCccccccccce
Q 010256 252 ----DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS--SSKGSIRLIDMRQSALCDTHSKLF 325 (514)
Q Consensus 252 ----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~--~~dg~i~~wd~~~~~~~~~~~~~~ 325 (514)
....++|+++....... .....++|...+|.|.+ +.|++. -.+..+.++|++..-. ..+
T Consensus 249 KsyfgesnLyl~~~~e~~i~V---------~~~~~~pVhdf~W~p~S-~~F~vi~g~~pa~~s~~~lr~Nl~-----~~~ 313 (561)
T COG5354 249 KSYFGESNLYLLRITERSIPV---------EKDLKDPVHDFTWEPLS-SRFAVISGYMPASVSVFDLRGNLR-----FYF 313 (561)
T ss_pred cceeccceEEEEeecccccce---------eccccccceeeeecccC-CceeEEecccccceeecccccceE-----Eec
Confidence 13567788877222111 11457899999999998 555543 5788999999987621 111
Q ss_pred eccCCCCccceeeccccceeEEEEecCCCEEEEEe--C--CeEEEEEccCCCCceeeeeeccccccccccccccCCccce
Q 010256 326 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 401 (514)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 401 (514)
. + ..-..+.|+|.+++++.++ . |.+.+||.......+..+.+....
T Consensus 314 P--e------------~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s---------------- 363 (561)
T COG5354 314 P--E------------QKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTS---------------- 363 (561)
T ss_pred C--C------------cccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCce----------------
Confidence 1 1 2345678999999998843 2 899999987523333344443321
Q ss_pred eeEEEcCCCCEEEEEe------CCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCe
Q 010256 402 FECCLSGDGGRVATGS------YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV 464 (514)
Q Consensus 402 ~~~~~s~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~ 464 (514)
-+.|+||++++.+.. .|..+.|||+... .. ...+.+.|.|.+++..+.|.+..
T Consensus 364 -~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~-~~--------fel~~~~W~p~~~~~ttsSs~~~ 422 (561)
T COG5354 364 -YCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA-KV--------FELTNITWDPSGQYVTTSSSCPK 422 (561)
T ss_pred -EeeccCCceEEEecCCCcccccCcceEEEEecCc-hh--------hhhhhccccCCcccceeeccCCC
Confidence 578999999988653 4788999999743 11 14457788888888888877763
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.1e-09 Score=94.11 Aligned_cols=129 Identities=16% Similarity=0.259 Sum_probs=93.7
Q ss_pred CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEE--EEecCCeEEEEEcCCCccccccccceeccCC
Q 010256 253 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA--YSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (514)
Q Consensus 253 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~--~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 330 (514)
+.++++.+++.....+. + ...++|.++.|+|++ +-|+ .|-.-..+.|||++..-. ++-.+
T Consensus 250 Eq~Lyll~t~g~s~~V~--------L-~k~GPVhdv~W~~s~-~EF~VvyGfMPAkvtifnlr~~~v-------~df~e- 311 (566)
T KOG2315|consen 250 EQTLYLLATQGESVSVP--------L-LKEGPVHDVTWSPSG-REFAVVYGFMPAKVTIFNLRGKPV-------FDFPE- 311 (566)
T ss_pred cceEEEEEecCceEEEe--------c-CCCCCceEEEECCCC-CEEEEEEecccceEEEEcCCCCEe-------EeCCC-
Confidence 34678888772222211 1 137899999999999 4444 345577899999976332 22222
Q ss_pred CCccceeeccccceeEEEEecCCCEEEEEe--C--CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEE
Q 010256 331 PGTRSFFTEIIASISDIKFARNGRHILSRD--Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 406 (514)
Q Consensus 331 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 406 (514)
++-+++-|+|.|++++.++ . |.+.|||+.+ .+.+..+...... -+.|
T Consensus 312 -----------gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n-~K~i~~~~a~~tt-----------------~~eW 362 (566)
T KOG2315|consen 312 -----------GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN-RKLIAKFKAANTT-----------------VFEW 362 (566)
T ss_pred -----------CCccceEECCCCCEEEEeecCCCCCceEEEeccc-hhhccccccCCce-----------------EEEE
Confidence 5678899999999988743 3 9999999997 8888877665432 5899
Q ss_pred cCCCCEEEEEeC------CCcEEEEecC
Q 010256 407 SGDGGRVATGSY------SNLFRVFGCS 428 (514)
Q Consensus 407 s~~~~~l~s~~~------dg~i~iwd~~ 428 (514)
+|||++++|++. |+.++||+..
T Consensus 363 ~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 363 SPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred cCCCcEEEEEeccccEEecCCeEEEEec
Confidence 999999998864 6889999986
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-07 Score=84.80 Aligned_cols=144 Identities=16% Similarity=0.238 Sum_probs=104.1
Q ss_pred cCccCeEEEEECCCCCEEEEe-cCC-eEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEE
Q 010256 231 AHDYHINSISNNSDGETFISA-DDL-RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 308 (514)
Q Consensus 231 ~h~~~v~~~~~~~~~~~l~s~-~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~ 308 (514)
+|.+.|.-..+..+++-++.| .|| .+-++|.++++.. .....-+.|.++..+|+| +.++.+.....+.
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k---------r~e~~lg~I~av~vs~dG-K~~vvaNdr~el~ 426 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK---------RIEKDLGNIEAVKVSPDG-KKVVVANDRFELW 426 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE---------EeeCCccceEEEEEcCCC-cEEEEEcCceEEE
Confidence 455667777777777788888 777 9999999865432 234456789999999999 8899899899999
Q ss_pred EEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE---eC--CeEEEEEccCCCCceeeeeecc
Q 010256 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR---DY--MTLKLWDINMDSGPVATFQVHE 383 (514)
Q Consensus 309 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~---~~--~~i~iwd~~~~~~~~~~~~~~~ 383 (514)
+.|+.++.. +..+..+ .+-|+.++|||+++++|-+ +. ..|+++|+.. ++.... ....
T Consensus 427 vididngnv-----~~idkS~-----------~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~-~Kiy~v-TT~t 488 (668)
T COG4946 427 VIDIDNGNV-----RLIDKSE-----------YGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG-GKIYDV-TTPT 488 (668)
T ss_pred EEEecCCCe-----eEecccc-----------cceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC-CeEEEe-cCCc
Confidence 999999874 3333222 2579999999999999975 22 7899999985 443322 2111
Q ss_pred ccccccccccccCCccceeeEEEcCCCCEEEEEe
Q 010256 384 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 417 (514)
Q Consensus 384 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 417 (514)
..- ++-+|.||+++|.--+
T Consensus 489 a~D---------------fsPaFD~d~ryLYfLs 507 (668)
T COG4946 489 AYD---------------FSPAFDPDGRYLYFLS 507 (668)
T ss_pred ccc---------------cCcccCCCCcEEEEEe
Confidence 110 1678999999877443
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.3e-07 Score=82.86 Aligned_cols=142 Identities=10% Similarity=0.069 Sum_probs=97.6
Q ss_pred CCceEEEEEecCCCcEEEEEecCC-eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe
Q 010256 282 TEVITSAEFHPTHCNMLAYSSSKG-SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD 360 (514)
Q Consensus 282 ~~~i~~v~~~p~~~~~l~~~~~dg-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~ 360 (514)
...|.-..+..++ .-++.|..|| .+-+||.++++. +.++ +.-+.|.++..+|+|++++.+.
T Consensus 359 ~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~~e~-----kr~e------------~~lg~I~av~vs~dGK~~vvaN 420 (668)
T COG4946 359 KGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDGGEV-----KRIE------------KDLGNIEAVKVSPDGKKVVVAN 420 (668)
T ss_pred CCceEEEEEccCC-cceEEeccCCceEEEEecCCceE-----EEee------------CCccceEEEEEcCCCcEEEEEc
Confidence 3445555555555 5678888888 889999988763 2222 2236799999999999999998
Q ss_pred C-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCC----cEEEEecCCCceeee
Q 010256 361 Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN----LFRVFGCSEGSAEST 435 (514)
Q Consensus 361 ~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg----~i~iwd~~~~~~~~~ 435 (514)
+ ..+.+.|+.+ +.....-+...+. |+.++|+|+++++|-+--+| .|+++|+..++....
T Consensus 421 dr~el~vididn-gnv~~idkS~~~l---------------Itdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v 484 (668)
T COG4946 421 DRFELWVIDIDN-GNVRLIDKSEYGL---------------ITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV 484 (668)
T ss_pred CceEEEEEEecC-CCeeEecccccce---------------eEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe
Confidence 7 8999999987 5543333333333 45899999999999876654 689999997643222
Q ss_pred eecCCCcceeEEEECCCCCceeec
Q 010256 436 TLEASKNPMRRQVQTPSRPSRPLG 459 (514)
Q Consensus 436 ~~~~~~~~v~~~~~~~~~~~l~s~ 459 (514)
......-.+-+|.|++++|..-
T Consensus 485 --TT~ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 485 --TTPTAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred --cCCcccccCcccCCCCcEEEEE
Confidence 2222233456788888876443
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2e-08 Score=91.05 Aligned_cols=286 Identities=14% Similarity=0.201 Sum_probs=162.6
Q ss_pred ccccccceEEEEEcCCCCeEEEecC-----------CCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccC
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDR-----------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSH 99 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~-----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 99 (514)
.+.|+ .|.-+.|||+.+||+|=+. ...++|||+.+|... +.|...
T Consensus 246 RF~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lk-----------------------rsF~~~ 301 (698)
T KOG2314|consen 246 RFYHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLK-----------------------RSFPVI 301 (698)
T ss_pred hccCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchh-----------------------cceecc
Confidence 34564 5888999999999998662 247999999998754 111110
Q ss_pred CCccccccccccccc-eeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCcee
Q 010256 100 EPEFDYLKSLEIEEK-INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS 178 (514)
Q Consensus 100 ~~~~~~~~~~~~~~~-v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 178 (514)
. + .-. -.-..| +.|++++|-... ..|.||+...-.+.....++. ..|. ...
T Consensus 302 ~-------~---~~~~WP~frW--S~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki--------~gIr-------~Fs 353 (698)
T KOG2314|consen 302 K-------S---PYLKWPIFRW--SHDDKYFARMTG-NSISIYETPSFMLLDKKSLKI--------SGIR-------DFS 353 (698)
T ss_pred C-------C---CccccceEEe--ccCCceeEEecc-ceEEEEecCceeeecccccCC--------cccc-------Ccc
Confidence 0 0 011 123467 678888887666 689999877654433333332 1222 667
Q ss_pred eccCCCccccccCCCCCCcccCCCCCC---cEEeceeeccccccccccccccccccCccCeE--EEEECCCCCEEEEe-c
Q 010256 179 YMANGGCGERNFGCASNDSSFPPGGVS---SLRLPVVVTSQETNLVAGCRRIYAHAHDYHIN--SISNNSDGETFISA-D 252 (514)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~~~~~~~~---~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~--~~~~~~~~~~l~s~-~ 252 (514)
|+|.++.|.. .+...+. .+.+.. .+..+.++. ..--.|. .+-|-.+|.+|+.- +
T Consensus 354 wsP~~~llAY----------wtpe~~~~parvtL~e-------vPs~~~iRt---~nlfnVsDckLhWQk~gdyLcvkvd 413 (698)
T KOG2314|consen 354 WSPTSNLLAY----------WTPETNNIPARVTLME-------VPSKREIRT---KNLFNVSDCKLHWQKSGDYLCVKVD 413 (698)
T ss_pred cCCCcceEEE----------EcccccCCcceEEEEe-------cCccceeee---ccceeeeccEEEeccCCcEEEEEEE
Confidence 8888776611 0111000 111100 000111111 0111222 34566778888753 1
Q ss_pred ----C------CeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEec---CCeEEEEEcCCCcccc
Q 010256 253 ----D------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS---KGSIRLIDMRQSALCD 319 (514)
Q Consensus 253 ----d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~---dg~i~~wd~~~~~~~~ 319 (514)
. ..+-|+.++.....+..+ .....|...+|-|.| +.|++-+. ..++.+|.+++.....
T Consensus 414 R~tK~~~~g~f~n~eIfrireKdIpve~v--------elke~vi~FaWEP~g-dkF~vi~g~~~k~tvsfY~~e~~~~~~ 484 (698)
T KOG2314|consen 414 RHTKSKVKGQFSNLEIFRIREKDIPVEVV--------ELKESVIAFAWEPHG-DKFAVISGNTVKNTVSFYAVETNIKKP 484 (698)
T ss_pred eeccccccceEeeEEEEEeeccCCCceee--------ecchheeeeeeccCC-CeEEEEEccccccceeEEEeecCCCch
Confidence 1 135566666444333322 246778999999999 55554332 3578889888543333
Q ss_pred ccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE---eC-CeEEEEEccCCCCceee-eeeccccccccccccc
Q 010256 320 THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR---DY-MTLKLWDINMDSGPVAT-FQVHEHLRPKLCDLYE 394 (514)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~---~~-~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~ 394 (514)
..++.++. ...+.+.|+|.|++++.+ +. |.+.++|+.. .....+ ...|..
T Consensus 485 ~lVk~~dk--------------~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~-a~~k~~~~~eh~~---------- 539 (698)
T KOG2314|consen 485 SLVKELDK--------------KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY-ADLKDTASPEHFA---------- 539 (698)
T ss_pred hhhhhhcc--------------cccceEEEcCCCcEEEEEEecccccceEEEecch-hhhhhccCccccc----------
Confidence 33444443 246889999999999975 33 8999999874 111111 111211
Q ss_pred cCCccceeeEEEcCCCCEEEEEeC------CCcEEEEecC
Q 010256 395 NDSIFDKFECCLSGDGGRVATGSY------SNLFRVFGCS 428 (514)
Q Consensus 395 ~~~~~~v~~~~~s~~~~~l~s~~~------dg~i~iwd~~ 428 (514)
.+.+-|.|.|+|+++++. |..-++|+..
T Consensus 540 ------at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 540 ------ATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred ------cccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence 226899999999999875 3445666665
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.4e-07 Score=83.45 Aligned_cols=255 Identities=9% Similarity=0.013 Sum_probs=134.3
Q ss_pred CCCCcEEEEe-e---------CCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 123 SANSALYLLS-T---------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 123 ~~~~~~l~s~-~---------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
+++++.++++ + .+..|.+||..+.+....+.....+.... ...+..++++|||+.+
T Consensus 54 spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~--------~~~~~~~~ls~dgk~l------ 119 (352)
T TIGR02658 54 ASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV--------GTYPWMTSLTPDNKTL------ 119 (352)
T ss_pred CCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc--------cCccceEEECCCCCEE------
Confidence 6777777776 4 58999999999998887776653322110 0112267899999988
Q ss_pred CCCCcccCCC-C-CCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeee
Q 010256 193 ASNDSSFPPG-G-VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 193 ~~~~~~~~~~-~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~ 270 (514)
+... . +..+.+.| +....... .... .+...-...+ +...++-+.||......+.+.+... .
T Consensus 120 ------~V~n~~p~~~V~VvD-~~~~kvv~------ei~v--p~~~~vy~t~-e~~~~~~~~Dg~~~~v~~d~~g~~~-~ 182 (352)
T TIGR02658 120 ------LFYQFSPSPAVGVVD-LEGKAFVR------MMDV--PDCYHIFPTA-NDTFFMHCRDGSLAKVGYGTKGNPK-I 182 (352)
T ss_pred ------EEecCCCCCEEEEEE-CCCCcEEE------EEeC--CCCcEEEEec-CCccEEEeecCceEEEEecCCCceE-E
Confidence 5433 3 67888888 32222110 0000 0111111111 1112222233333333222222111 0
Q ss_pred eccCCCcccccCCce-EEEEEec-CCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEE
Q 010256 271 VDVKPANMEDLTEVI-TSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (514)
Q Consensus 271 ~~~~~~~~~~~~~~i-~~v~~~p-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (514)
... ..+.....++ ..-.|.+ ++ .++..... |.|.+.|+....... ...+......... -....+.+.-++
T Consensus 183 ~~~--~vf~~~~~~v~~rP~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~--~~~~~~~~~~~~~--~~wrP~g~q~ia 254 (352)
T TIGR02658 183 KPT--EVFHPEDEYLINHPAYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKF--LPAIEAFTEAEKA--DGWRPGGWQQVA 254 (352)
T ss_pred eee--eeecCCccccccCCceEcCCC-cEEEEecC-CeEEEEecCCCccee--cceeeeccccccc--cccCCCcceeEE
Confidence 000 0000000000 0014566 66 55555544 999999976543221 1111110000000 000113445599
Q ss_pred EecCCCEEEEEe---------C--CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCC-EEEEE
Q 010256 349 FARNGRHILSRD---------Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATG 416 (514)
Q Consensus 349 ~s~~g~~l~~~~---------~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~ 416 (514)
++|+++.++... + +.|.++|..+ ++.+..+..... ...++++||++ +|++.
T Consensus 255 ~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t-~kvi~~i~vG~~----------------~~~iavS~Dgkp~lyvt 317 (352)
T TIGR02658 255 YHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT-GKRLRKIELGHE----------------IDSINVSQDAKPLLYAL 317 (352)
T ss_pred EcCCCCEEEEEecCCccccccCCCCEEEEEECCC-CeEEEEEeCCCc----------------eeeEEECCCCCeEEEEe
Confidence 999998887731 1 5899999997 777777764332 23899999999 77766
Q ss_pred e-CCCcEEEEecCCCcee
Q 010256 417 S-YSNLFRVFGCSEGSAE 433 (514)
Q Consensus 417 ~-~dg~i~iwd~~~~~~~ 433 (514)
. .++.|.++|..+++..
T Consensus 318 n~~s~~VsViD~~t~k~i 335 (352)
T TIGR02658 318 STGDKTLYIFDAETGKEL 335 (352)
T ss_pred CCCCCcEEEEECcCCeEE
Confidence 5 6788999999987443
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.1e-10 Score=105.14 Aligned_cols=288 Identities=15% Similarity=0.236 Sum_probs=183.1
Q ss_pred ccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccc
Q 010256 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (514)
.-..++.++.++|.|+-+|.++.-| +.+-|+...-. | .+++..+..
T Consensus 22 ~v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~------------------p-pr~l~h~tp-------------- 67 (1081)
T KOG0309|consen 22 KVDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFT------------------P-PRWLHHITP-------------- 67 (1081)
T ss_pred EecCcccceeeccccchhhhhhhcC-eEEEeccCCCC------------------C-ceeeeccCc--------------
Confidence 4457899999999999999998887 56667654321 0 112222221
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
-.|-.+.|+|.+...+-++......-.+|++...
T Consensus 68 w~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s---------------------------------------------- 101 (1081)
T KOG0309|consen 68 WQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS---------------------------------------------- 101 (1081)
T ss_pred chhcceecccCCCCceeEEecCcchhhhhhhhcC----------------------------------------------
Confidence 2377788988776666666655556667765421
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCC-CEEEEe-cCCeEEEEeccCCCceeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~ 270 (514)
.+..|.+ ++.+|...|+++-|+|+. ..++++ -|-.+..||++.....+..
T Consensus 102 ----------s~~aIef------------------~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys 153 (1081)
T KOG0309|consen 102 ----------SSNAIEF------------------VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYS 153 (1081)
T ss_pred ----------CccceEE------------------EEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceee
Confidence 1222222 247899999999999975 466777 8999999999987766543
Q ss_pred eccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEe
Q 010256 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (514)
Q Consensus 271 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 350 (514)
. ..-......++|+-..++.+| .+..+.|++||++.+... ...+++|...|..++|.
T Consensus 154 ~-------~~w~s~asqVkwnyk~p~vla-sshg~~i~vwd~r~gs~p---------------l~s~K~~vs~vn~~~fn 210 (1081)
T KOG0309|consen 154 T-------SSWRSAASQVKWNYKDPNVLA-SSHGNDIFVWDLRKGSTP---------------LCSLKGHVSSVNSIDFN 210 (1081)
T ss_pred e-------ecccccCceeeecccCcchhh-hccCCceEEEeccCCCcc---------------eEEecccceeeehHHHh
Confidence 2 223455678999877745554 566778999999987643 22345566788888887
Q ss_pred c--CCCEEEEEeCCeEEEEEccCCCCce-eeeeeccccccccccccccCCccceeeEEEcCCC--CEEE---------EE
Q 010256 351 R--NGRHILSRDYMTLKLWDINMDSGPV-ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG--GRVA---------TG 416 (514)
Q Consensus 351 ~--~g~~l~~~~~~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~---------s~ 416 (514)
. .+..+-+..|++|+.||.....+.- .+....- .++.-++-|-| .+++ --
T Consensus 211 r~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~----------------piw~~r~~Pfg~g~~~mp~~G~n~v~~~ 274 (1081)
T KOG0309|consen 211 RFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNF----------------PIWRGRYLPFGEGYCIMPMVGGNMVPQL 274 (1081)
T ss_pred hhhhhhhcccCCCCceeeecccccccccceeccccC----------------cceeccccccCceeEeccccCCeeeeec
Confidence 5 2334444567999999987522111 1111110 11223333322 2222 11
Q ss_pred eCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCC----------ceeecCCCCeEEE
Q 010256 417 SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP----------SRPLGSLSGVVRR 467 (514)
Q Consensus 417 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------~l~s~s~d~~v~i 467 (514)
.-++....|+..++-....++.||.+.|....|...+. .|++=|.|.++|+
T Consensus 275 ~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrl 335 (1081)
T KOG0309|consen 275 RCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRL 335 (1081)
T ss_pred cccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEe
Confidence 22334445666666566689999999998877754322 6899999999999
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.8e-08 Score=94.12 Aligned_cols=204 Identities=12% Similarity=0.051 Sum_probs=112.1
Q ss_pred cceeEEEEeeCCCCcE--E-EEeeCC--CeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccc
Q 010256 113 EKINKIRWCQSANSAL--Y-LLSTND--KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~--l-~s~~~d--~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 187 (514)
..+..-+|+ +||+. + +++..+ ..|.+.++.+++...+....... . ...|+|||+.+.
T Consensus 185 ~~~~sP~wS--PDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~---------~-------~p~wSPDG~~La 246 (428)
T PRK01029 185 SLSITPTWM--HIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQ---------L-------MPTFSPRKKLLA 246 (428)
T ss_pred CCcccceEc--cCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCc---------c-------ceEECCCCCEEE
Confidence 345667894 56543 3 244333 45777788888766655544211 1 568999998872
Q ss_pred cccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCeEEEEe--ccC
Q 010256 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWN--LEI 263 (514)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd--~~~ 263 (514)
.... ..+..+-.+.+|+ +... ......+. ...+.......+|+|||+.|+.. .+|...+|. +..
T Consensus 247 f~s~-------~~g~~di~~~~~~-~~~g---~~g~~~~l-t~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~ 314 (428)
T PRK01029 247 FISD-------RYGNPDLFIQSFS-LETG---AIGKPRRL-LNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDP 314 (428)
T ss_pred EEEC-------CCCCcceeEEEee-cccC---CCCcceEe-ecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcc
Confidence 1100 0011122223233 1111 01111111 12222334568999999988765 466555554 432
Q ss_pred CCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC---CeEEEEEcCCCccccccccceeccCCCCccceeecc
Q 010256 264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 340 (514)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (514)
...... .+......+....|+||| +.|+..+.+ ..|.+||+.+++.. .+.. .
T Consensus 315 ~g~~~~-------~lt~~~~~~~~p~wSPDG-~~Laf~~~~~g~~~I~v~dl~~g~~~-----~Lt~------------~ 369 (428)
T PRK01029 315 EGQSPR-------LLTKKYRNSSCPAWSPDG-KKIAFCSVIKGVRQICVYDLATGRDY-----QLTT------------S 369 (428)
T ss_pred cccceE-------EeccCCCCccceeECCCC-CEEEEEEcCCCCcEEEEEECCCCCeE-----EccC------------C
Confidence 111111 222334456788999999 666655543 36899999887642 1110 1
Q ss_pred ccceeEEEEecCCCEEEE-Ee---CCeEEEEEccC
Q 010256 341 IASISDIKFARNGRHILS-RD---YMTLKLWDINM 371 (514)
Q Consensus 341 ~~~i~~~~~s~~g~~l~~-~~---~~~i~iwd~~~ 371 (514)
...+....|+|||+.|+. +. ...|.++|+..
T Consensus 370 ~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 370 PENKESPSWAIDSLHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred CCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 124567899999998875 32 26788888874
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.3e-09 Score=88.37 Aligned_cols=223 Identities=10% Similarity=0.006 Sum_probs=136.4
Q ss_pred cCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCc
Q 010256 199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 277 (514)
Q Consensus 199 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 277 (514)
+.....|.|.++. ....+........... .-......++.|++.+..++++ .+|.+.+-+....... +-+.
T Consensus 89 ~~a~a~G~i~~~r-~~~~~ss~~L~~ls~~-ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le------~vq~ 160 (339)
T KOG0280|consen 89 LDAHARGQIQLYR-NDEDESSVHLRGLSSK-KISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLE------KVQT 160 (339)
T ss_pred eeccccceEEEEe-eccceeeeeecccchh-hhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeee------eccc
Confidence 5566778888776 2222221111111100 0011134577889999999999 8999985544322111 1135
Q ss_pred ccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec-CCCEE
Q 010256 278 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHI 356 (514)
Q Consensus 278 ~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l 356 (514)
.+.|..++....|+...++++++|+.|+.+..||+|..+. ..|.. .+.|...|.++.-+| .+.++
T Consensus 161 wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~-----~i~~n---------~kvH~~GV~SI~ss~~~~~~I 226 (339)
T KOG0280|consen 161 WKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT-----FIWHN---------SKVHTSGVVSIYSSPPKPTYI 226 (339)
T ss_pred ccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc-----eeeec---------ceeeecceEEEecCCCCCceE
Confidence 7789999999999988889999999999999999993221 11111 234668899998886 67799
Q ss_pred EEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCC--CEEEEEeCCCcEEEEecCCCcee
Q 010256 357 LSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG--GRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 357 ~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
++|+. -.|++||.++-++++..-.... +|+.+.++|.- ++|+++-..| .+|-+.+.+...
T Consensus 227 ~TGsYDe~i~~~DtRnm~kPl~~~~v~G----------------GVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e 289 (339)
T KOG0280|consen 227 ATGSYDECIRVLDTRNMGKPLFKAKVGG----------------GVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLE 289 (339)
T ss_pred EEeccccceeeeehhcccCccccCcccc----------------ceEEEEecchhhhHHHHHHHhcC-ceEEEecccccc
Confidence 99986 8999999996577765443322 35678888743 3444444433 566665543222
Q ss_pred ----eeeecCCCcceeEEEECCCCCceeecC
Q 010256 434 ----STTLEASKNPMRRQVQTPSRPSRPLGS 460 (514)
Q Consensus 434 ----~~~~~~~~~~v~~~~~~~~~~~l~s~s 460 (514)
....+.|.+-.+.-.|..-..++|++|
T Consensus 290 ~~~~~~s~~~hdSl~YG~DWd~~~~~lATCs 320 (339)
T KOG0280|consen 290 FQIVLPSDKIHDSLCYGGDWDSKDSFLATCS 320 (339)
T ss_pred hheeeeccccccceeeccccccccceeeeee
Confidence 123334544444444433335667765
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.7e-08 Score=85.93 Aligned_cols=254 Identities=10% Similarity=0.114 Sum_probs=141.0
Q ss_pred EcCCCCeEEEecC----------CCeEEEEEecCCcccCCcccccccccccccCCccceeeeeecc-CCCcccccccccc
Q 010256 43 FDKSGDHLATGDR----------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQS-HEPEFDYLKSLEI 111 (514)
Q Consensus 43 ~s~~g~~l~tg~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~ 111 (514)
+||||+.|+++.. +..|.+||..+.+...+ +.. -.|++. .
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~-----------------------i~~p~~p~~~------~ 103 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIAD-----------------------IELPEGPRFL------V 103 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeE-----------------------EccCCCchhh------c
Confidence 9999998887765 67899999998875421 110 000000 0
Q ss_pred ccceeEEEEeeCCCCcEEEEee-C-CCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 112 EEKINKIRWCQSANSALYLLST-N-DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~-~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
...-..+++ +++|+++++.. . +..|.+.|+.+++.......... ..++.. ..-.......||..+.
T Consensus 104 ~~~~~~~~l--s~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~-------~~vy~t-~e~~~~~~~~Dg~~~~-- 171 (352)
T TIGR02658 104 GTYPWMTSL--TPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC-------YHIFPT-ANDTFFMHCRDGSLAK-- 171 (352)
T ss_pred cCccceEEE--CCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC-------cEEEEe-cCCccEEEeecCceEE--
Confidence 011334556 78888888764 3 79999999999988776655321 111100 0000122234444331
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeE-EEEECC-CCCEEEEecCCeEEEEeccCCCce
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHIN-SISNNS-DGETFISADDLRINLWNLEISNQS 267 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~-~~~~l~s~~d~~i~iwd~~~~~~~ 267 (514)
++-..+|....= ....+ .....++. .-.|.+ +|+++.....|+|.+.|+...+..
T Consensus 172 ---------v~~d~~g~~~~~-------------~~~vf-~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~ 228 (352)
T TIGR02658 172 ---------VGYGTKGNPKIK-------------PTEVF-HPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAK 228 (352)
T ss_pred ---------EEecCCCceEEe-------------eeeee-cCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcce
Confidence 112222221100 00000 11000000 003455 888888885599999997543221
Q ss_pred ----eeeeccCCCcccccCCceEEEEEecCCCcEEEE-Ee---------cCCeEEEEEcCCCccccccccceeccCCCCc
Q 010256 268 ----FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY-SS---------SKGSIRLIDMRQSALCDTHSKLFEEQEAPGT 333 (514)
Q Consensus 268 ----~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~-~~---------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 333 (514)
..++......-....+.+.-++++|++ +.++. .. ..+.|.++|..+++.. ..+...
T Consensus 229 ~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg-~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi----~~i~vG----- 298 (352)
T TIGR02658 229 FLPAIEAFTEAEKADGWRPGGWQQVAYHRAR-DRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL----RKIELG----- 298 (352)
T ss_pred ecceeeeccccccccccCCCcceeEEEcCCC-CEEEEEecCCccccccCCCCEEEEEECCCCeEE----EEEeCC-----
Confidence 111111100001133445559999999 45554 32 2258999999988763 323322
Q ss_pred cceeeccccceeEEEEecCCC-EEEEEe--CCeEEEEEccCCCCceeee
Q 010256 334 RSFFTEIIASISDIKFARNGR-HILSRD--YMTLKLWDINMDSGPVATF 379 (514)
Q Consensus 334 ~~~~~~~~~~i~~~~~s~~g~-~l~~~~--~~~i~iwd~~~~~~~~~~~ 379 (514)
..+..++++||++ +|++.. ++.|.++|..+ ++.+.++
T Consensus 299 --------~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t-~k~i~~i 338 (352)
T TIGR02658 299 --------HEIDSINVSQDAKPLLYALSTGDKTLYIFDAET-GKELSSV 338 (352)
T ss_pred --------CceeeEEECCCCCeEEEEeCCCCCcEEEEECcC-CeEEeee
Confidence 3688999999999 777654 48899999997 7777776
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.8e-08 Score=93.76 Aligned_cols=406 Identities=11% Similarity=0.062 Sum_probs=195.9
Q ss_pred ccccceEEEEEcCC------C------CeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCC
Q 010256 33 QEVDIISAIEFDKS------G------DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHE 100 (514)
Q Consensus 33 ~h~~~V~~~~~s~~------g------~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 100 (514)
.|+..|+.+.|.|- + -+||+++..|.|.+||...+..+ ..++.|.
T Consensus 53 ~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~-----------------------~~l~~~~ 109 (1062)
T KOG1912|consen 53 LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVI-----------------------NWLSHSN 109 (1062)
T ss_pred cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhh-----------------------hhhcCCC
Confidence 57899999999982 1 26888999999999998766532 3456666
Q ss_pred CccccccccccccceeEEEEeeCCCCc--EEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCcee
Q 010256 101 PEFDYLKSLEIEEKINKIRWCQSANSA--LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS 178 (514)
Q Consensus 101 ~~~~~~~~~~~~~~v~~i~~~~~~~~~--~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 178 (514)
++|..++|.+..+.. .|++-....++.+|+..+|+........... .. ++.
T Consensus 110 ------------~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~i--------Ls-------~f~ 162 (1062)
T KOG1912|consen 110 ------------DSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEI--------LS-------CFR 162 (1062)
T ss_pred ------------cchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcc--------ee-------eee
Confidence 889999998865543 5556677889999999998754333222110 00 111
Q ss_pred ecc-CCCccccccCCCC----CCcccCCCCCCcEEeceeecccccccccccccccc-ccCcc---------CeEEEEECC
Q 010256 179 YMA-NGGCGERNFGCAS----NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA-HAHDY---------HINSISNNS 243 (514)
Q Consensus 179 ~~~-~~~~l~~~~~~~~----~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-~~h~~---------~v~~~~~~~ 243 (514)
+.| |.+.+.+ .+... .+++.....++..+.+. +.........-.+.... ..++. ....++|+|
T Consensus 163 ~DPfd~rh~~~-l~s~g~vl~~~~l~~sep~~pgk~~q-I~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p 240 (1062)
T KOG1912|consen 163 VDPFDSRHFCV-LGSKGFVLSCKDLGLSEPDVPGKEFQ-ITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSP 240 (1062)
T ss_pred eCCCCcceEEE-EccCceEEEEeccCCCCCCCCceeEE-EecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcCh
Confidence 222 1111100 00000 01111122223333333 11111000000000000 00000 012456788
Q ss_pred CCC-EEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCC-cEEEEEecCCeEEEEEcCCCcccccc
Q 010256 244 DGE-TFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC-NMLAYSSSKGSIRLIDMRQSALCDTH 321 (514)
Q Consensus 244 ~~~-~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~ 321 (514)
.-+ .+...--..+.++|++-.... ..+ .++ .+.+.=+.+-|+.. ..|++...||.+.+|-.+......+.
T Consensus 241 ~~rn~lfi~~prellv~dle~~~~l-~vv-----pie--r~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~ 312 (1062)
T KOG1912|consen 241 HWRNILFITFPRELLVFDLEYECCL-AVV-----PIE--RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKK 312 (1062)
T ss_pred hhhceEEEEeccceEEEcchhhcee-EEE-----Eec--cCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccc
Confidence 744 444446778999999844333 222 222 33344455566542 57888999999999976542211000
Q ss_pred -ccc--eeccCCCCccceeecc-ccceeEEEEecCCCEEEE--EeCCeEEEEEccCCCCceeeeee-----------ccc
Q 010256 322 -SKL--FEEQEAPGTRSFFTEI-IASISDIKFARNGRHILS--RDYMTLKLWDINMDSGPVATFQV-----------HEH 384 (514)
Q Consensus 322 -~~~--~~~~~~~~~~~~~~~~-~~~i~~~~~s~~g~~l~~--~~~~~i~iwd~~~~~~~~~~~~~-----------~~~ 384 (514)
... ++..+ +...+... .-.+......|...-.++ -++|.+.+|.+.+ ++.-..... ...
T Consensus 313 ~~~~l~~dl~~---Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~-~ri~~~~~s~~iel~~pf~f~~~ 388 (1062)
T KOG1912|consen 313 PNASLSMDLGE---QVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSN-GRIHLDYRSSSIELVLPFDFNLS 388 (1062)
T ss_pred cchhhcccccc---ceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhc-CCcCcccccccccccccccccCc
Confidence 000 00000 00000000 001112222333222221 2446677777764 221100000 000
Q ss_pred --c--ccccccccccC-Cccceee-----------EEEcCCCC-------EEEEEeCCCcEEEEecCCCceeeeeecCCC
Q 010256 385 --L--RPKLCDLYEND-SIFDKFE-----------CCLSGDGG-------RVATGSYSNLFRVFGCSEGSAESTTLEASK 441 (514)
Q Consensus 385 --~--~~~~~~~~~~~-~~~~v~~-----------~~~s~~~~-------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 441 (514)
. ...+..+...+ .-.+.++ ..-.|.|+ ++|.|...|+|.++|+.++ .....+..|.
T Consensus 389 ~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~-~v~~~fsvht 467 (1062)
T KOG1912|consen 389 TKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTN-AVAASFSVHT 467 (1062)
T ss_pred eeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecch-hhhhhhcccc
Confidence 0 00000000000 0000000 11112222 6788999999999999987 4457888999
Q ss_pred cceeEEEECCCCCceeecC-C----CCeEE----E--eeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEe
Q 010256 442 NPMRRQVQTPSRPSRPLGS-L----SGVVR----R--VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 505 (514)
Q Consensus 442 ~~v~~~~~~~~~~~l~s~s-~----d~~v~----i--~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~ 505 (514)
..|..+.|.....++-.+- . .|.++ + +..+.-. .+.+..-.-...|+.+.-|..+.+|++.-
T Consensus 468 ~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk--~fR~l~~~despI~~irvS~~~~yLai~F 540 (1062)
T KOG1912|consen 468 SLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSK--RFRGLQKPDESPIRAIRVSSSGRYLAILF 540 (1062)
T ss_pred cceeeeeeccceeEEEeeeccccccccceeeeEEEEEccccccc--ccccCCCCCcCcceeeeecccCceEEEEe
Confidence 9999999977665543221 1 11121 1 2222111 12222223478899999999999999765
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.6e-07 Score=95.75 Aligned_cols=227 Identities=9% Similarity=0.079 Sum_probs=131.6
Q ss_pred cCeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCC--Ccccc-------cCCceEEEEEecCCCcEEEEEe
Q 010256 234 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKP--ANMED-------LTEVITSAEFHPTHCNMLAYSS 302 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~-------~~~~i~~v~~~p~~~~~l~~~~ 302 (514)
.....++++++++.|..+ ..+.|+.+|+.++. ...+..... ....+ .-.....++++|++..++++.+
T Consensus 624 ~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~ 702 (1057)
T PLN02919 624 NRPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA 702 (1057)
T ss_pred CCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC
Confidence 345788999988876666 56789999987432 211110000 00000 0123468999995437778888
Q ss_pred cCCeEEEEEcCCCccccccccceeccCCCCc---cceeeccccceeEEEEecCCCEEEEE-e-CCeEEEEEccCCCCcee
Q 010256 303 SKGSIRLIDMRQSALCDTHSKLFEEQEAPGT---RSFFTEIIASISDIKFARNGRHILSR-D-YMTLKLWDINMDSGPVA 377 (514)
Q Consensus 303 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~s~~g~~l~~~-~-~~~i~iwd~~~~~~~~~ 377 (514)
.++.|++||..++... .+.+...... .............++++|+|+.|+.+ . +++|++||+.+ +...
T Consensus 703 ~~~~I~v~d~~~g~v~-----~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~t-g~~~- 775 (1057)
T PLN02919 703 GQHQIWEYNISDGVTR-----VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKT-GGSR- 775 (1057)
T ss_pred CCCeEEEEECCCCeEE-----EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCC-CcEE-
Confidence 8999999999876531 1211100000 00000111346779999999866654 3 38999999986 3321
Q ss_pred eeeecccc-cccccccccc------CCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeee------------ec
Q 010256 378 TFQVHEHL-RPKLCDLYEN------DSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTT------------LE 438 (514)
Q Consensus 378 ~~~~~~~~-~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------------~~ 438 (514)
.+.+.... ......+-.. .....-..++++++|+++++-..+++|++||..++...... ..
T Consensus 776 ~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~ 855 (1057)
T PLN02919 776 LLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALK 855 (1057)
T ss_pred EEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccc
Confidence 11110000 0000000000 00001127899999998888889999999999866322111 11
Q ss_pred CCCcceeEEEECCCCCceeecCCCCeEEEe
Q 010256 439 ASKNPMRRQVQTPSRPSRPLGSLSGVVRRV 468 (514)
Q Consensus 439 ~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~ 468 (514)
+.......++++++|+++++-+.++.|+++
T Consensus 856 a~l~~P~GIavd~dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 856 AQLSEPAGLALGENGRLFVADTNNSLIRYL 885 (1057)
T ss_pred cccCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence 122356789999999999999999999993
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.9e-07 Score=95.56 Aligned_cols=188 Identities=13% Similarity=0.142 Sum_probs=106.8
Q ss_pred eEEEEECCC-CCEEEEe-cCCeEEEEeccCCCceeeeec-cCCCccc------ccCCceEEEEEecCCCcEEEEEecCCe
Q 010256 236 INSISNNSD-GETFISA-DDLRINLWNLEISNQSFNIVD-VKPANME------DLTEVITSAEFHPTHCNMLAYSSSKGS 306 (514)
Q Consensus 236 v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~-~~~~~~~------~~~~~i~~v~~~p~~~~~l~~~~~dg~ 306 (514)
...++++|+ +.++++. .++.|++||..++... .+.. ....... ..-.....++++|++..++++-+.++.
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~ 763 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS 763 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence 357899994 5555555 7899999998754321 1100 0000000 112345789999998446666777899
Q ss_pred EEEEEcCCCccccc---------cccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCce
Q 010256 307 IRLIDMRQSALCDT---------HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPV 376 (514)
Q Consensus 307 i~~wd~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~ 376 (514)
|++||+.++..... ....+........ .........++++++|.++++-.. ++|++||..+ +. +
T Consensus 764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~----~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~t-g~-v 837 (1057)
T PLN02919 764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGS----EVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPAT-KR-V 837 (1057)
T ss_pred EEEEECCCCcEEEEEecccccCcccccccCCCCchh----hhhccCCceeeEeCCCcEEEEECCCCEEEEEECCC-Ce-E
Confidence 99999987642100 0000000000000 001123468999999987777554 9999999875 33 3
Q ss_pred eeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCc
Q 010256 377 ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 431 (514)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 431 (514)
.++.+....... ..............++++++|+++++-+.++.|++||+.++.
T Consensus 838 ~tiaG~G~~G~~-dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 838 TTLAGTGKAGFK-DGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EEEeccCCcCCC-CCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 333221110000 000000111112379999999998888899999999998764
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.3e-09 Score=107.88 Aligned_cols=194 Identities=15% Similarity=0.237 Sum_probs=130.8
Q ss_pred cccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccc
Q 010256 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (514)
..+-..|.++.-+|...+.+||+.||.|++|....+..+ ..++.-.
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v-----------------------~~~rt~g----------- 2250 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQV-----------------------VCFRTAG----------- 2250 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeE-----------------------EEeeccC-----------
Confidence 345678899999999999999999999999998765532 2222111
Q ss_pred ccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
...|+.+.| +..|..+..+..||.+.+|.+... .....+.+.. ....+.|.. ..+
T Consensus 2251 ~s~vtr~~f--~~qGnk~~i~d~dg~l~l~q~~pk---~~~s~qchnk-------------~~~Df~Fi~--s~~----- 2305 (2439)
T KOG1064|consen 2251 NSRVTRSRF--NHQGNKFGIVDGDGDLSLWQASPK---PYTSWQCHNK-------------ALSDFRFIG--SLL----- 2305 (2439)
T ss_pred cchhhhhhh--cccCCceeeeccCCceeecccCCc---ceeccccCCc-------------cccceeeee--hhh-----
Confidence 166899999 566778999999999999998732 1111111110 000222222 111
Q ss_pred CCCCCcccC---CCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCce
Q 010256 192 CASNDSSFP---PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (514)
Q Consensus 192 ~~~~~~~~~---~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 267 (514)
++ ...++.+.+||.+..... ... -..|.+.++++++-|..+.|++| .+|.|++||++..+..
T Consensus 2306 -------~tag~s~d~~n~~lwDtl~~~~~----s~v---~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~ 2371 (2439)
T KOG1064|consen 2306 -------ATAGRSSDNRNVCLWDTLLPPMN----SLV---HTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLR 2371 (2439)
T ss_pred -------hccccCCCCCcccchhcccCccc----cee---eeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHH
Confidence 32 235678999993222211 111 16899999999999999999999 9999999999844322
Q ss_pred eeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcc
Q 010256 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL 317 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~ 317 (514)
|.-+. ++ .. .+|++|+..|.++||++..-..
T Consensus 2372 -------------h~~~~----~~-~~-~~f~~~ss~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2372 -------------HTFQA----LD-TR-EYFVTGSSEGNIKIWRLSEFGL 2402 (2439)
T ss_pred -------------HHhhh----hh-hh-heeeccCcccceEEEEccccch
Confidence 11111 34 33 7999999999999999987654
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.2e-07 Score=76.68 Aligned_cols=242 Identities=9% Similarity=0.002 Sum_probs=143.3
Q ss_pred cEEEEeeCCCeEEEEEcCccEEE-EEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCC
Q 010256 127 ALYLLSTNDKTIKLWKVQEKKVK-KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (514)
Q Consensus 127 ~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 205 (514)
.+|+.++..|...+|...+.+.. ........ +-.+ +...+....-+..++.|.
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn-------------------------~v~~-~~r~cd~~~~~~i~sndh 138 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNN-------------------------DVTL-VKRYCDLKFPLNIASNDH 138 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeeccccc-------------------------chhh-hhhhcccccceeeccCCc
Confidence 38889999999999998865422 22221110 0000 001111111225566777
Q ss_pred cEEeceeeccccccccccccccccccCccC--eEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccC
Q 010256 206 SLRLPVVVTSQETNLVAGCRRIYAHAHDYH--INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLT 282 (514)
Q Consensus 206 ~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 282 (514)
++++.+ +..... . ...|... +.++++++|++++++. +...|..|.+......+.-+. .....
T Consensus 139 t~k~~~-~~~~s~---~------~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~-----~a~t~ 203 (344)
T KOG4532|consen 139 TGKTMV-VSGDSN---K------FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIY-----EAPTS 203 (344)
T ss_pred ceeEEE-EecCcc---c------ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeE-----ecccC
Confidence 777766 221111 0 0223333 7889999999999987 889999999986554433221 12223
Q ss_pred CceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCC--EEEEE-
Q 010256 283 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR--HILSR- 359 (514)
Q Consensus 283 ~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~--~l~~~- 359 (514)
+.-.+..|+... ..+|++..||++.|||+|....... .+.. .-..|.+.++.+.|++-|. +|...
T Consensus 204 D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~~~tpm~----~~ss-------trp~hnGa~R~c~Fsl~g~lDLLf~sE 271 (344)
T KOG4532|consen 204 DHGFYNSFSEND-LQFAVVFQDGTCAIYDVRNMATPMA----EISS-------TRPHHNGAFRVCRFSLYGLLDLLFISE 271 (344)
T ss_pred CCceeeeeccCc-ceEEEEecCCcEEEEEecccccchh----hhcc-------cCCCCCCceEEEEecCCCcceEEEEec
Confidence 344678899887 8999999999999999998654321 1111 1234779999999998553 33334
Q ss_pred eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 360 DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 360 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
.-+.+.+-|+++ .+..+.+...+.... ......++..+|+.++.-+.+.+.+ .+.-|++.+.
T Consensus 272 hfs~~hv~D~R~-~~~~q~I~i~~d~~~-------~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~sr 333 (344)
T KOG4532|consen 272 HFSRVHVVDTRN-YVNHQVIVIPDDVER-------KHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSR 333 (344)
T ss_pred CcceEEEEEccc-CceeeEEecCccccc-------cccccccccccccCCCcccccccch-hhheeecccc
Confidence 348999999997 555444433222100 0111124467788777766655543 4556666543
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.6e-08 Score=84.99 Aligned_cols=195 Identities=9% Similarity=0.038 Sum_probs=138.5
Q ss_pred cCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEc
Q 010256 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~ 312 (514)
.+++++.+.++...|+.| +.|++.-+.+...-.... .++....|...+..+.|+-.. .++++.+.|..+.---.
T Consensus 69 ~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~----~~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~ 143 (404)
T KOG1409|consen 69 SPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMT----FLKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCT 143 (404)
T ss_pred CCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcc----hhhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEee
Confidence 567889999999999999 999999887753211111 123456789999999998776 78999999988765555
Q ss_pred CCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccC-CCCceeeeeeccccccccc
Q 010256 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM-DSGPVATFQVHEHLRPKLC 390 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~ 390 (514)
+.+..... +.+.. .-+++.+.-. +...|+. +.|.+-.+.. .-.++.++.+|...
T Consensus 144 e~~~~lg~--Y~~~~---------------~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~----- 199 (404)
T KOG1409|consen 144 ESGNRLGG--YNFET---------------PASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGE----- 199 (404)
T ss_pred ccCCcccc--eEeec---------------cCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccc-----
Confidence 55543221 11111 1111222111 3334543 6665555442 13456677777655
Q ss_pred cccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 391 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 391 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+.+++|.+..+.|++|..|.++.+||+.-.......+.+|...|..+...+--+.+.+++.||.|.+
T Consensus 200 ----------~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~ 266 (404)
T KOG1409|consen 200 ----------VTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVV 266 (404)
T ss_pred ----------eEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEE
Confidence 3499999999999999999999999998766666889999999999999888899999999999988
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.9e-09 Score=93.98 Aligned_cols=247 Identities=17% Similarity=0.177 Sum_probs=137.8
Q ss_pred ccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEec
Q 010256 224 CRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS 303 (514)
Q Consensus 224 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~ 303 (514)
|..++ ..|+.+|.++.|-.+.++++++ ||-|.+||.-.+.......+. .-.+..+.|.++.- -+..-+++.++.
T Consensus 776 CQfTY-~aHkk~i~~igfL~~lr~i~Sc-D~giHlWDPFigr~Laq~~da---pk~~a~~~ikcl~n-v~~~iliAgcsa 849 (1034)
T KOG4190|consen 776 CQFTY-QAHKKPIHDIGFLADLRSIASC-DGGIHLWDPFIGRLLAQMEDA---PKEGAGGNIKCLEN-VDRHILIAGCSA 849 (1034)
T ss_pred eeeEh-hhccCcccceeeeeccceeeec-cCcceeecccccchhHhhhcC---cccCCCceeEeccc-Ccchheeeeccc
Confidence 33344 7899999999999998888766 466999998655443322110 11122233333321 123134444577
Q ss_pred CCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE-eCCeEEEEEccCCCCceeeeeec
Q 010256 304 KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVH 382 (514)
Q Consensus 304 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~ 382 (514)
..+++++|.+..... ..++.... .+..+.+.+++..+.|..++++ +.|.|.+.|.++ ++.+..+..-
T Consensus 850 eSTVKl~DaRsce~~----~E~kVcna-------~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~-G~vINswrpm 917 (1034)
T KOG4190|consen 850 ESTVKLFDARSCEWT----CELKVCNA-------PGPNALTRAIAVADKGNKLAAALSNGCIAILDARN-GKVINSWRPM 917 (1034)
T ss_pred hhhheeeecccccce----eeEEeccC-------CCCchheeEEEeccCcchhhHHhcCCcEEEEecCC-CceeccCCcc
Confidence 899999999987642 22332221 1223568999999999999998 559999999997 7766655432
Q ss_pred cccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEE-EecCCCceeeeeecCCCcceeEEEECCCCCceeecCC
Q 010256 383 EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV-FGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL 461 (514)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i-wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~ 461 (514)
+.. + ..++ .|..+.|+....|.++.+ |..-.+... ...+....+ +--...-|+-|+++..
T Consensus 918 ecd------l---------lqla-apsdq~L~~saldHslaVnWhaldgimh-~q~kpppep--ahflqsvgpSLV~a~~ 978 (1034)
T KOG4190|consen 918 ECD------L---------LQLA-APSDQALAQSALDHSLAVNWHALDGIMH-LQDKPPPEP--AHFLQSVGPSLVTAQN 978 (1034)
T ss_pred cch------h---------hhhc-CchhHHHHhhcccceeEeeehhcCCeee-eccCCCCcc--hhhhhccCceeEEecc
Confidence 211 0 0222 355667777778888888 877655221 122211111 1111223455566555
Q ss_pred CCeEEEe-eCCCCCccc-c-CCcccccccceEEEEEcCCCCEEEEEecC
Q 010256 462 SGVVRRV-KGADNSALD-A-NGNAFDFSMKLLHLAWHPSENSIACAASN 507 (514)
Q Consensus 462 d~~v~i~-~~~~~~~~~-~-~~~~~~~~~~v~~~~~spd~~~l~~~~~~ 507 (514)
...+.++ +........ + ....-++.+..++++--|-...+.+|.+.
T Consensus 979 Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~ 1027 (1034)
T KOG4190|consen 979 GNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEH 1027 (1034)
T ss_pred CcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCC
Confidence 5555551 111111000 0 01112345667777777765555555433
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.7e-07 Score=83.26 Aligned_cols=306 Identities=10% Similarity=0.084 Sum_probs=158.1
Q ss_pred CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEEEeeCCC
Q 010256 46 SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSAN 125 (514)
Q Consensus 46 ~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~ 125 (514)
.+..+++++.+|.|..+|..+++.. ....+.+ .+.. .|..+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~---------------------W~~~~~~---------------~~~~---~p~v~ 104 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRL---------------------WRVDLDE---------------RLSG---GVGAD 104 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEe---------------------eeecCCC---------------Cccc---ceEEc
Confidence 3668888889999999998888742 1111111 1110 11123
Q ss_pred CcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCC
Q 010256 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (514)
Q Consensus 126 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 205 (514)
+..+++++.++.+..+|..+|+.......... +.. .... .+..+ +.+..++
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~---------~~~------~p~v--~~~~v------------~v~~~~g 155 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSE---------VLS------PPLV--ANGLV------------VVRTNDG 155 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCce---------eec------CCEE--ECCEE------------EEECCCC
Confidence 45788888999999999999987655443211 110 0011 12222 4556677
Q ss_pred cEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCc
Q 010256 206 SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEV 284 (514)
Q Consensus 206 ~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 284 (514)
.+..+| ..+.+..-........ ...... ...... + ..++.+ .++.+..+|.++++.....-...+.. ......
T Consensus 156 ~l~a~d-~~tG~~~W~~~~~~~~-~~~~~~-~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g-~~~~~~ 229 (377)
T TIGR03300 156 RLTALD-AATGERLWTYSRVTPA-LTLRGS-ASPVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKG-RTELER 229 (377)
T ss_pred eEEEEE-cCCCceeeEEccCCCc-eeecCC-CCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCC-CCchhh
Confidence 788777 3222111000000000 000000 011111 2 356666 78999999998776543210000000 000000
Q ss_pred ---e-EEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE-
Q 010256 285 ---I-TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR- 359 (514)
Q Consensus 285 ---i-~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~- 359 (514)
+ .+..+ .+ ..++.++.+|.+..||..+++..+.. +. ........ .+..++.+
T Consensus 230 ~~~~~~~p~~--~~-~~vy~~~~~g~l~a~d~~tG~~~W~~----~~--------------~~~~~p~~--~~~~vyv~~ 286 (377)
T TIGR03300 230 LVDVDGDPVV--DG-GQVYAVSYQGRVAALDLRSGRVLWKR----DA--------------SSYQGPAV--DDNRLYVTD 286 (377)
T ss_pred hhccCCccEE--EC-CEEEEEEcCCEEEEEECCCCcEEEee----cc--------------CCccCceE--eCCEEEEEC
Confidence 0 11112 23 46777888999999999998764321 10 01111222 34555554
Q ss_pred eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecC
Q 010256 360 DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA 439 (514)
Q Consensus 360 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 439 (514)
.+|.+..+|..+ ++.+-......... ..+... .+..|++++.+|.|+++|..+++.+ ..++.
T Consensus 287 ~~G~l~~~d~~t-G~~~W~~~~~~~~~--------------~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~-~~~~~ 348 (377)
T TIGR03300 287 ADGVVVALDRRS-GSELWKNDELKYRQ--------------LTAPAV--VGGYLVVGDFEGYLHWLSREDGSFV-ARLKT 348 (377)
T ss_pred CCCeEEEEECCC-CcEEEccccccCCc--------------cccCEE--ECCEEEEEeCCCEEEEEECCCCCEE-EEEEc
Confidence 459999999987 66554332111000 002222 4668889999999999999988443 45554
Q ss_pred CCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 440 SKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 440 ~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+...+...-...++ .|..++.||.+..
T Consensus 349 ~~~~~~~sp~~~~~-~l~v~~~dG~l~~ 375 (377)
T TIGR03300 349 DGSGIASPPVVVGD-GLLVQTRDGDLYA 375 (377)
T ss_pred CCCccccCCEEECC-EEEEEeCCceEEE
Confidence 44332222122233 4667777887654
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.1e-07 Score=87.64 Aligned_cols=180 Identities=11% Similarity=0.044 Sum_probs=109.8
Q ss_pred CeEEEEECCCCCE-EEE-e-c--CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC--CeE
Q 010256 235 HINSISNNSDGET-FIS-A-D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--GSI 307 (514)
Q Consensus 235 ~v~~~~~~~~~~~-l~s-~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d--g~i 307 (514)
......|+|||+. ++. . . +..|.++|+.+++.. . +....+......|+|||..++++.+.+ ..|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~-~--------lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 259 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE-K--------IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDI 259 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE-E--------EecCCCcEEeeEECCCCCEEEEEEccCCCcEE
Confidence 6678999999984 553 3 3 467889999765432 2 122344556778999995455555544 467
Q ss_pred EEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC----CeEEEEEccCCCCceeeeeecc
Q 010256 308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY----MTLKLWDINMDSGPVATFQVHE 383 (514)
Q Consensus 308 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~----~~i~iwd~~~~~~~~~~~~~~~ 383 (514)
.++|+.++... .+ +.+........|+|||+.|+-.++ ..|.+.|+.. ++. ..+....
T Consensus 260 y~~dl~~g~~~-----~L------------T~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~-g~~-~rlt~~g 320 (419)
T PRK04043 260 YLYDTNTKTLT-----QI------------TNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS-GSV-EQVVFHG 320 (419)
T ss_pred EEEECCCCcEE-----Ec------------ccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC-CCe-EeCccCC
Confidence 77787766431 11 111112234579999998886543 3677777764 333 2222111
Q ss_pred ccccccccccccCCccceeeEEEcCCCCEEEEEeCC---------CcEEEEecCCCceeeeeecCCCcceeEEEECCCCC
Q 010256 384 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---------NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP 454 (514)
Q Consensus 384 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 454 (514)
.. ...|+|||++|+..+.. ..|++.|+.++... .+... .......|+|||+
T Consensus 321 ~~-----------------~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~--~LT~~-~~~~~p~~SPDG~ 380 (419)
T PRK04043 321 KN-----------------NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR--RLTAN-GVNQFPRFSSDGG 380 (419)
T ss_pred Cc-----------------CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE--ECCCC-CCcCCeEECCCCC
Confidence 00 24799999998866543 36888898877443 23322 2233578999999
Q ss_pred ceeecCCC
Q 010256 455 SRPLGSLS 462 (514)
Q Consensus 455 ~l~s~s~d 462 (514)
.|+..+.+
T Consensus 381 ~I~f~~~~ 388 (419)
T PRK04043 381 SIMFIKYL 388 (419)
T ss_pred EEEEEEcc
Confidence 88776543
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.4e-07 Score=76.53 Aligned_cols=231 Identities=9% Similarity=-0.036 Sum_probs=140.9
Q ss_pred CCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccccc
Q 010256 245 GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK 323 (514)
Q Consensus 245 ~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 323 (514)
--+|+.| ..|...+|...+.+....+.+ .+...|+-+.=..+....+..++.|.++++.++.-+...
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd-------~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~----- 151 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCD-------VSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK----- 151 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeec-------ccccchhhhhhhcccccceeeccCCcceeEEEEecCccc-----
Confidence 3467777 899999999986655443322 122222211111122134666788888888888765431
Q ss_pred ceeccCCCCccceeecccc--ceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccc
Q 010256 324 LFEEQEAPGTRSFFTEIIA--SISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFD 400 (514)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (514)
+..|.. .+.++++++|++++++-+| ..|..|.+..++.-+......... +.-
T Consensus 152 -------------~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~----------D~g-- 206 (344)
T KOG4532|consen 152 -------------FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS----------DHG-- 206 (344)
T ss_pred -------------ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC----------CCc--
Confidence 111111 3788999999999999666 899999998644433332211111 222
Q ss_pred eeeEEEcCCCCEEEEEeCCCcEEEEecCCCceee----eeecCCCcceeEEEECCCCC--ceeecCCCCeEEEeeCCCCC
Q 010256 401 KFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES----TTLEASKNPMRRQVQTPSRP--SRPLGSLSGVVRRVKGADNS 474 (514)
Q Consensus 401 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~v~i~~~~~~~ 474 (514)
++..|+.....+|++..||.+.|||++...... .+-..|.++++.+.|++.|. +|...-.-+.+.+.+.....
T Consensus 207 -F~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 207 -FYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred -eeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence 278999999999999999999999998754332 23346889999999998665 34443344555554333333
Q ss_pred ccccCCc----cccccc-ceEEEEEcCCCCEEEEEecCcEEEEe
Q 010256 475 ALDANGN----AFDFSM-KLLHLAWHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 475 ~~~~~~~----~~~~~~-~v~~~~~spd~~~l~~~~~~~~~i~~ 513 (514)
..+.... ...|.. .|..-.|+.++..+-+.++..++-|+
T Consensus 286 ~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~n 329 (344)
T KOG4532|consen 286 NHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQGAEYN 329 (344)
T ss_pred eeeEEecCccccccccccccccccccCCCcccccccchhhheee
Confidence 2221111 112333 37777788877777766666555543
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.2e-07 Score=84.98 Aligned_cols=177 Identities=9% Similarity=0.027 Sum_probs=107.0
Q ss_pred ceEEEEEecCCCcEEEEEecC---CeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE-
Q 010256 284 VITSAEFHPTHCNMLAYSSSK---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR- 359 (514)
Q Consensus 284 ~i~~v~~~p~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~- 359 (514)
......|+|+|...++..+.+ ..|.++|+.+++.. .+ ....+......|+|||+.++..
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~-----~l------------t~~~g~~~~~~~SPDG~~la~~~ 251 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE-----KI------------ASSQGMLVVSDVSKDGSKLLLTM 251 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE-----EE------------ecCCCcEEeeEECCCCCEEEEEE
Confidence 677899999994345544443 46888899877631 11 1111345667899999887753
Q ss_pred e---CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeC-CC--cEEEEecCCCcee
Q 010256 360 D---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SN--LFRVFGCSEGSAE 433 (514)
Q Consensus 360 ~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg--~i~iwd~~~~~~~ 433 (514)
+ +..|.++|+.. +. ...+..+.... ....|+|||+.|+..+. .+ .|++.|+.+++..
T Consensus 252 ~~~g~~~Iy~~dl~~-g~-~~~LT~~~~~d---------------~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~ 314 (419)
T PRK04043 252 APKGQPDIYLYDTNT-KT-LTQITNYPGID---------------VNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE 314 (419)
T ss_pred ccCCCcEEEEEECCC-Cc-EEEcccCCCcc---------------CccEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence 2 26788888764 33 44443332211 14689999998776553 23 6888888877543
Q ss_pred eeeecCCCcceeEEEECCCCCceeecCCCC---------eEEEe--eCCCCCccccCCcccccccceEEEEEcCCCCEEE
Q 010256 434 STTLEASKNPMRRQVQTPSRPSRPLGSLSG---------VVRRV--KGADNSALDANGNAFDFSMKLLHLAWHPSENSIA 502 (514)
Q Consensus 434 ~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~---------~v~i~--~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~ 502 (514)
..+..+.. ...|+|+|++|+..+... .+.++ ++.... .+.. ........|+|||+.|+
T Consensus 315 rlt~~g~~----~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~--~LT~-----~~~~~~p~~SPDG~~I~ 383 (419)
T PRK04043 315 QVVFHGKN----NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR--RLTA-----NGVNQFPRFSSDGGSIM 383 (419)
T ss_pred eCccCCCc----CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE--ECCC-----CCCcCCeEECCCCCEEE
Confidence 33333221 248999999887776542 34443 233222 1111 12233689999999998
Q ss_pred EEe
Q 010256 503 CAA 505 (514)
Q Consensus 503 ~~~ 505 (514)
..+
T Consensus 384 f~~ 386 (419)
T PRK04043 384 FIK 386 (419)
T ss_pred EEE
Confidence 655
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.3e-08 Score=92.28 Aligned_cols=294 Identities=15% Similarity=0.184 Sum_probs=171.2
Q ss_pred cccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccc
Q 010256 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (514)
Q Consensus 30 ~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (514)
.+.+|+..|..++--.+.+-+++++.|.+|++|.+...... . ......-+++.|.
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~---------~-------~tsaCQfTY~aHk--------- 784 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE---------I-------GTSACQFTYQAHK--------- 784 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCc---------c-------ccceeeeEhhhcc---------
Confidence 46799999999988888889999999999999998644321 0 0111334567787
Q ss_pred ccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
.+|.++.|. .+-+ ..++.||.|.+||.--+....... +.|.
T Consensus 785 ---k~i~~igfL--~~lr--~i~ScD~giHlWDPFigr~Laq~~-------------------------dapk------- 825 (1034)
T KOG4190|consen 785 ---KPIHDIGFL--ADLR--SIASCDGGIHLWDPFIGRLLAQME-------------------------DAPK------- 825 (1034)
T ss_pred ---Ccccceeee--eccc--eeeeccCcceeecccccchhHhhh-------------------------cCcc-------
Confidence 889999995 3322 345678999999976654321100 0000
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCeEEEEeccCCCce
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQS 267 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~ 267 (514)
.+..+.|.++. +-+...++.+ ...+|+++|.+..+-.
T Consensus 826 ----------------------------------------~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~ 864 (1034)
T KOG4190|consen 826 ----------------------------------------EGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWT 864 (1034)
T ss_pred ----------------------------------------cCCCceeEecc-cCcchheeeeccchhhheeeecccccce
Confidence 11112233321 1234444444 6889999999866543
Q ss_pred eeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEE
Q 010256 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 347 (514)
.++. .-+-.+.+..+++++..|.| +.++.+-.+|.|.+.|.++|+.+ ..|..-+ .....+
T Consensus 865 ~E~k---Vcna~~Pna~~R~iaVa~~G-N~lAa~LSnGci~~LDaR~G~vI----Nswrpme------------cdllql 924 (1034)
T KOG4190|consen 865 CELK---VCNAPGPNALTRAIAVADKG-NKLAAALSNGCIAILDARNGKVI----NSWRPME------------CDLLQL 924 (1034)
T ss_pred eeEE---eccCCCCchheeEEEeccCc-chhhHHhcCCcEEEEecCCCcee----ccCCccc------------chhhhh
Confidence 3321 11223456778999999999 89999999999999999999863 2222211 112222
Q ss_pred EEecCCCEEEE-EeCCeEEE-EEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEE
Q 010256 348 KFARNGRHILS-RDYMTLKL-WDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 425 (514)
Q Consensus 348 ~~s~~g~~l~~-~~~~~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 425 (514)
+ .|..+.++. +.+.++.+ |.... +......+....+. --...-|.-|+++...+.+.+|
T Consensus 925 a-apsdq~L~~saldHslaVnWhald-gimh~q~kpppepa-----------------hflqsvgpSLV~a~~Gn~lgVY 985 (1034)
T KOG4190|consen 925 A-APSDQALAQSALDHSLAVNWHALD-GIMHLQDKPPPEPA-----------------HFLQSVGPSLVTAQNGNILGVY 985 (1034)
T ss_pred c-CchhHHHHhhcccceeEeeehhcC-CeeeeccCCCCcch-----------------hhhhccCceeEEeccCcEEEEE
Confidence 2 244556654 45677777 76543 33222222111110 0011124456666666677777
Q ss_pred ecCCCcee---eeeec--CCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 426 GCSEGSAE---STTLE--ASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 426 d~~~~~~~---~~~~~--~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.-...... ...++ ...+..++++..|-..-.+.|++.|.|++
T Consensus 986 ad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 986 ADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred ecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 43211000 01111 23345667777777777777777777765
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.7e-08 Score=102.33 Aligned_cols=185 Identities=12% Similarity=0.163 Sum_probs=136.3
Q ss_pred ccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEE
Q 010256 230 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 308 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~ 308 (514)
..+-..|.++.-+|...+.++| .||.+++|....+++.... . ......++.+.|+.+| +.+..+..||.+.
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~------r-t~g~s~vtr~~f~~qG-nk~~i~d~dg~l~ 2276 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCF------R-TAGNSRVTRSRFNHQG-NKFGIVDGDGDLS 2276 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEe------e-ccCcchhhhhhhcccC-CceeeeccCCcee
Confidence 3445678888889999999999 9999999999866665432 1 2234889999999999 8999999999999
Q ss_pred EEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE---eC-CeEEEEEccCCCCceeeeeeccc
Q 010256 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR---DY-MTLKLWDINMDSGPVATFQVHEH 384 (514)
Q Consensus 309 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~---~~-~~i~iwd~~~~~~~~~~~~~~~~ 384 (514)
+|...... ...++. |.....++.|-. ..++++ +| +.+.+||...+...-..-..|.+
T Consensus 2277 l~q~~pk~-----~~s~qc------------hnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~ 2337 (2439)
T KOG1064|consen 2277 LWQASPKP-----YTSWQC------------HNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDG 2337 (2439)
T ss_pred ecccCCcc-----eecccc------------CCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCC
Confidence 99987211 333333 334566677764 566653 34 89999997654333333366665
Q ss_pred cccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCe
Q 010256 385 LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV 464 (514)
Q Consensus 385 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~ 464 (514)
. ++++++-|..++|++|+.+|.|++||++.. ++.++++. +. ...++++|+..|.
T Consensus 2338 g---------------aT~l~~~P~~qllisggr~G~v~l~D~rqr-ql~h~~~~---------~~-~~~~f~~~ss~g~ 2391 (2439)
T KOG1064|consen 2338 G---------------ATVLAYAPKHQLLISGGRKGEVCLFDIRQR-QLRHTFQA---------LD-TREYFVTGSSEGN 2391 (2439)
T ss_pred C---------------ceEEEEcCcceEEEecCCcCcEEEeehHHH-HHHHHhhh---------hh-hhheeeccCcccc
Confidence 4 348999999999999999999999999854 33333332 33 6678999999999
Q ss_pred EEE
Q 010256 465 VRR 467 (514)
Q Consensus 465 v~i 467 (514)
++|
T Consensus 2392 ikI 2394 (2439)
T KOG1064|consen 2392 IKI 2394 (2439)
T ss_pred eEE
Confidence 999
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.4e-06 Score=73.24 Aligned_cols=186 Identities=17% Similarity=0.212 Sum_probs=111.3
Q ss_pred cCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCc-c-cccCCceEEEEEecCC-----CcEEEEEe
Q 010256 231 AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN-M-EDLTEVITSAEFHPTH-----CNMLAYSS 302 (514)
Q Consensus 231 ~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~-~-~~~~~~i~~v~~~p~~-----~~~l~~~~ 302 (514)
.....-+.++|+||+..||.+ ..|+|++||+. +...+.+ +|.. + ......|..+.|.+.. ...|++-.
T Consensus 41 D~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~-g~~lf~I---~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~ 116 (282)
T PF15492_consen 41 DPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLM-GSELFVI---PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVIN 116 (282)
T ss_pred CCCchheEEEECCCCcEEEEEcCCCeEEEEecc-cceeEEc---CcccccCCccccceeeeEeeccccccccceeEEEEe
Confidence 334456789999999999999 99999999997 3444332 2211 1 1234567777775432 13566667
Q ss_pred cCCeEEEEEcCCCccc-cccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC---C---------eEEEEEc
Q 010256 303 SKGSIRLIDMRQSALC-DTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY---M---------TLKLWDI 369 (514)
Q Consensus 303 ~dg~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~---~---------~i~iwd~ 369 (514)
.+|.++-|-+..+... .+....|. +...+...|.++.++|..++|+.|+. . -+..|.+
T Consensus 117 Y~G~L~Sy~vs~gt~q~y~e~hsfs---------f~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRi 187 (282)
T PF15492_consen 117 YRGQLRSYLVSVGTNQGYQENHSFS---------FSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRI 187 (282)
T ss_pred ccceeeeEEEEcccCCcceeeEEEE---------ecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEE
Confidence 7888877776433210 00011111 11123468999999999888887531 1 4667777
Q ss_pred cCCCCceeeeee-c-cccc--c---cc---cc--ccc--cCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 370 NMDSGPVATFQV-H-EHLR--P---KL---CD--LYE--NDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 370 ~~~~~~~~~~~~-~-~~~~--~---~~---~~--~~~--~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
-. +.+-..... . +... . .+ .. ++. ....-.|+.+..||||++||+...+|.|.+|++.+-
T Consensus 188 L~-~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 188 LS-DSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred cC-CCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 65 333222111 1 1100 0 00 00 110 111224568999999999999999999999999875
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.8e-08 Score=94.44 Aligned_cols=184 Identities=17% Similarity=0.237 Sum_probs=129.9
Q ss_pred CeEEEEECCCC---CEEEEecCCeEEEEeccCCC-ceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEE
Q 010256 235 HINSISNNSDG---ETFISADDLRINLWNLEISN-QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 310 (514)
Q Consensus 235 ~v~~~~~~~~~---~~l~s~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~w 310 (514)
.|-.+.|+|.. ..+++-....-.+|++.... ..+++ .+.+|...|+.+-|+|+.+..+++++.|-.+..|
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef------~lhghsraitd~n~~~q~pdVlatcsvdt~vh~w 142 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEF------VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAW 142 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEE------EEecCccceeccccCCCCCcceeeccccccceee
Confidence 45567787752 33444466677789886432 22332 4678999999999999998999999999999999
Q ss_pred EcCCCccccccccceeccCCCCccceeeccccceeEEEEec-CCCEEEEEeCCeEEEEEccCCCCceeeeeecccccccc
Q 010256 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKL 389 (514)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 389 (514)
|+++.... ++.+..-. ..-..|+|+- ++..+|+.....|++||++.++.++..+++|...+.
T Consensus 143 d~rSp~~p---~ys~~~w~------------s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn-- 205 (1081)
T KOG0309|consen 143 DMRSPHRP---FYSTSSWR------------SAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVN-- 205 (1081)
T ss_pred eccCCCcc---eeeeeccc------------ccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeee--
Confidence 99985432 33333221 3567788986 555666655688999999998889999988654322
Q ss_pred ccccccCCccceeeEEEcCC-CCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCC
Q 010256 390 CDLYENDSIFDKFECCLSGD-GGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP 454 (514)
Q Consensus 390 ~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 454 (514)
.++|..- ...+.+.+.|++|++||................+++.-.+.|-|.
T Consensus 206 -------------~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~ 258 (1081)
T KOG0309|consen 206 -------------SIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGE 258 (1081)
T ss_pred -------------hHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCc
Confidence 5555432 235778999999999998765444444555567777777777554
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.9e-07 Score=82.82 Aligned_cols=327 Identities=14% Similarity=0.164 Sum_probs=194.1
Q ss_pred cccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccc
Q 010256 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (514)
.-|.+.|+.+.-+. .+++.+++.||.++.|.-..-. ...++..+..|.
T Consensus 6 ymhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~is--------------------GvEfVKhFraHL----------- 53 (558)
T KOG0882|consen 6 YMHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRIS--------------------GVEFVKHFRAHL----------- 53 (558)
T ss_pred hcccceeeeEeeeh-hheEEeeecchhhhhcCCCCcc--------------------ceeehhhhHHHH-----------
Confidence 35888888887664 4699999999999999854211 112555677776
Q ss_pred ccceeEEEEeeCCCCcEEEEeeC-CCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeec-cCCCccccc
Q 010256 112 EEKINKIRWCQSANSALYLLSTN-DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM-ANGGCGERN 189 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~l~~~ 189 (514)
..|.+++. +.++.++.+.+. |..++++|+++-.......+...|. ...|. ..|..+
T Consensus 54 -~~I~sl~~--S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg----------------~a~wv~skGd~~--- 111 (558)
T KOG0882|consen 54 -GVILSLAV--SYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPG----------------FAEWVTSKGDKI--- 111 (558)
T ss_pred -HHHHhhhc--cccceeEeeccCcccceeEEEeeccchhhhcccccCCC----------------ceEEecCCCCee---
Confidence 66777777 567778888777 9999999999876555444443331 11111 111000
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCC-Cce
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS-NQS 267 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~-~~~ 267 (514)
..+.++.-.++.+.++| -.. + ..+...+..-|..+|..+.+++.+..+++. ..|.|..|..+.. +..
T Consensus 112 -----s~IAVs~~~sg~i~VvD-~~~-d----~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfP 180 (558)
T KOG0882|consen 112 -----SLIAVSLFKSGKIFVVD-GFG-D----FCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFP 180 (558)
T ss_pred -----eeEEeecccCCCcEEEC-CcC-C----cCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCc
Confidence 11124445667777777 111 0 111122235688999999999999999999 7999999998731 111
Q ss_pred eee--eccCC----CcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceec-cCCCCc-------
Q 010256 268 FNI--VDVKP----ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE-QEAPGT------- 333 (514)
Q Consensus 268 ~~~--~~~~~----~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~-~~~~~~------- 333 (514)
..- +..+. ..+........++.|+|++ ..+.+-+.|..|++++++++++....-.+... +..+..
T Consensus 181 r~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g-~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~V 259 (558)
T KOG0882|consen 181 RTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG-AQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHV 259 (558)
T ss_pred cccccccccccchhhcccccccCccceEEcccc-CcccccCcccEEEEEEeccchhhhhhhccchhhhhcccccccccee
Confidence 000 11111 0112234667899999999 89999999999999999999864221111000 000000
Q ss_pred --------cceeeccc-cceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCC-------
Q 010256 334 --------RSFFTEII-ASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDS------- 397 (514)
Q Consensus 334 --------~~~~~~~~-~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 397 (514)
.+.+..|. ..-+.+.|...|++|+-|+-=-|++.++.+ +...+.+-..+...-.-..+|....
T Consensus 260 elgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~t-n~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~ 338 (558)
T KOG0882|consen 260 ELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDT-NTVVRILGKDEAIRFTRLSLYQGAQKSNLAAL 338 (558)
T ss_pred ehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeec-CeEEEEeccchhhhhhhHHHHhhhhhccchhh
Confidence 00111122 234567788899999998875689999887 5555444322211100000110000
Q ss_pred --cc-ceeeEEEcCCCCEEEEEeCCCcEEEE
Q 010256 398 --IF-DKFECCLSGDGGRVATGSYSNLFRVF 425 (514)
Q Consensus 398 --~~-~v~~~~~s~~~~~l~s~~~dg~i~iw 425 (514)
.. .--.+.+.+|..+++++-..+++++|
T Consensus 339 ~~~a~~np~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 339 EVAASNNPLLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred hhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence 00 00023466777788888788888888
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.4e-08 Score=84.51 Aligned_cols=159 Identities=11% Similarity=0.146 Sum_probs=98.8
Q ss_pred eEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCe---EEEEE
Q 010256 236 INSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS---IRLID 311 (514)
Q Consensus 236 v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~---i~~wd 311 (514)
...+..++.++++|.+ .+....+++.....+..+.++. .......+++.|..+. .....+..-|. +.+|.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~-----~~v~~~~~ai~~~~~~-~sv~v~dkagD~~~~di~s 138 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDV-----SCVPKRPTAISFIRED-TSVLVADKAGDVYSFDILS 138 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeE-----eecccCcceeeeeecc-ceEEEEeecCCceeeeeec
Confidence 3455677888899988 7777767777644432222111 1112223344444333 23333333333 33333
Q ss_pred cCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccc
Q 010256 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLC 390 (514)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 390 (514)
...+. .....+|.+-++.++|+||+++|++++. ..|+|-........-.-..+|.+.+.
T Consensus 139 ~~~~~-----------------~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS--- 198 (390)
T KOG3914|consen 139 ADSGR-----------------CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVS--- 198 (390)
T ss_pred ccccC-----------------cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhhee---
Confidence 33221 1225678899999999999999999975 99999877652222333456877654
Q ss_pred cccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCcee
Q 010256 391 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 391 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
.++.- ++..|+++|.|++|++||+.+++.+
T Consensus 199 ------------~isl~-~~~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 199 ------------TISLT-DNYLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred ------------eeeec-cCceeeecCCCCcEEEEecccCCcc
Confidence 56665 4556899999999999999998665
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.8e-05 Score=66.72 Aligned_cols=229 Identities=16% Similarity=0.170 Sum_probs=122.2
Q ss_pred EEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccc
Q 010256 239 ISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALC 318 (514)
Q Consensus 239 ~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~ 318 (514)
++.+.+|+.||.-.|..|.|=..+..-... ..+..........-+.++|+||+ .+||.+...|+|++||+....+
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si---~~kcqVpkD~~PQWRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~l- 77 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSI---IGKCQVPKDPNPQWRKLAWSPDC-TLLAYAESTGTIRVFDLMGSEL- 77 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchhe---eEEEecCCCCCchheEEEECCCC-cEEEEEcCCCeEEEEeccccee-
Confidence 567789999988888888887665332111 01111112233446799999999 8999999999999999976442
Q ss_pred cccccceeccCCCCccceeeccccceeEEEEecC-------CCEEEEEeCCeEEEEEccC----CCCceeeeeecccccc
Q 010256 319 DTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN-------GRHILSRDYMTLKLWDINM----DSGPVATFQVHEHLRP 387 (514)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-------g~~l~~~~~~~i~iwd~~~----~~~~~~~~~~~~~~~~ 387 (514)
..+..... ....-...|..+.|-+- -++|+..-.|.++=|-+.. ..+...++......
T Consensus 78 ----f~I~p~~~-----~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~y-- 146 (282)
T PF15492_consen 78 ----FVIPPAMS-----FPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHY-- 146 (282)
T ss_pred ----EEcCcccc-----cCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccC--
Confidence 22221110 01112356777777542 1344444446666665432 12223333322211
Q ss_pred ccccccccCCccceeeEEEcCCCCEEEEEeCCCc-----------EEEEecCCCceeeeeecCCCcceeEEEECCCCCce
Q 010256 388 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL-----------FRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSR 456 (514)
Q Consensus 388 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~-----------i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 456 (514)
..+|.++.++|..++|+.|+.... +.-|.+-++. |..+.
T Consensus 147 ----------p~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~-------------------Pyyk~- 196 (282)
T PF15492_consen 147 ----------PHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDS-------------------PYYKQ- 196 (282)
T ss_pred ----------CCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCC-------------------CcEEE-
Confidence 123558999999998887764321 2223322221 11111
Q ss_pred eecCCCCeEEEeeCCC---CCccccCCcccccccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 457 PLGSLSGVVRRVKGAD---NSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 457 ~s~s~d~~v~i~~~~~---~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
++..+|......+... .....+..........|..|..||||+.||+.. ++.+.+|.
T Consensus 197 v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~ 257 (282)
T PF15492_consen 197 VTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWE 257 (282)
T ss_pred ccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEe
Confidence 1122222110100000 000000001112478899999999999999776 77888885
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.5e-07 Score=74.61 Aligned_cols=143 Identities=17% Similarity=0.177 Sum_probs=88.5
Q ss_pred cCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecC------CeEEEEeccCCCceeeeec
Q 010256 199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADD------LRINLWNLEISNQSFNIVD 272 (514)
Q Consensus 199 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d------~~i~iwd~~~~~~~~~~~~ 272 (514)
+++..||.+.+.+ .+. ..+..+.....|.+ -.+.+....++.+.++.- +..+.|+++..+...
T Consensus 105 ~~~~~dg~~~v~s----~~~--~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~---- 173 (319)
T KOG4714|consen 105 CIGYADGSLAVFS----TDK--DLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLI---- 173 (319)
T ss_pred EecCCCceEEEEe----chH--HHhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeeccccccccc----
Confidence 7788889888776 111 11111111111211 123334445666666433 344556655222111
Q ss_pred cCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec-
Q 010256 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR- 351 (514)
Q Consensus 273 ~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~- 351 (514)
+... ....|.+++-+|...+++++|+.||.+.+||.++.... ...+..|+.+|..+.|+|
T Consensus 174 --~~~~--~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p---------------~S~l~ahk~~i~eV~FHpk 234 (319)
T KOG4714|consen 174 --PSKK--ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP---------------VSLLKAHKAEIWEVHFHPK 234 (319)
T ss_pred --cccc--ccccchhhhCCcccccEEEEecCCCeEEEEEcccccch---------------HHHHHHhhhhhhheeccCC
Confidence 1111 12338999999988788999999999999999987542 233566778999999999
Q ss_pred CCCEEEEEe-CCeEEEEEccC
Q 010256 352 NGRHILSRD-YMTLKLWDINM 371 (514)
Q Consensus 352 ~g~~l~~~~-~~~i~iwd~~~ 371 (514)
++..|++++ ||.+.-||..+
T Consensus 235 ~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 235 NPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred CchheeEecCCCcEEEEcCCC
Confidence 566777765 59999999873
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.1e-05 Score=66.75 Aligned_cols=145 Identities=11% Similarity=0.137 Sum_probs=88.2
Q ss_pred cCeEEEEECCCCCEEEEe-cC--------CeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC
Q 010256 234 YHINSISNNSDGETFISA-DD--------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK 304 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~-~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d 304 (514)
...++++++|+|++.++. .. |.|..++.. ++ .... ...-.....++|+|++..++++-+..
T Consensus 86 ~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~--------~~~~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 86 NRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVV--------ADGLGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp EEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEE--------EEEESSEEEEEEETTSSEEEEEETTT
T ss_pred CCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce-EEEE--------ecCcccccceEECCcchheeeccccc
Confidence 456789999999977764 22 557667765 22 2211 11245578999999994455567778
Q ss_pred CeEEEEEcCCCccccccccce-eccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeec
Q 010256 305 GSIRLIDMRQSALCDTHSKLF-EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVH 382 (514)
Q Consensus 305 g~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~ 382 (514)
+.|..|++..........+.+ +... ..+..-.+++..+|++.++.-. +.|.++|.+ ++.+..+...
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~~----------~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~--G~~~~~i~~p 223 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVFIDFPG----------GPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD--GKLLREIELP 223 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEE-SS----------SSCEEEEEEEBTTS-EEEEEETTTEEEEEETT--SCEEEEEE-S
T ss_pred ceeEEEeccccccceeeeeeEEEcCC----------CCcCCCcceEcCCCCEEEEEcCCCEEEEECCC--ccEEEEEcCC
Confidence 899999986433211111112 1111 1134778999999998887644 899999987 7777777665
Q ss_pred cccccccccccccCCccceeeEEEc-CCCCEEEE
Q 010256 383 EHLRPKLCDLYENDSIFDKFECCLS-GDGGRVAT 415 (514)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s 415 (514)
... .++++|. ++.+.|+.
T Consensus 224 ~~~---------------~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 224 VPR---------------PTNCAFGGPDGKTLYV 242 (246)
T ss_dssp SSS---------------EEEEEEESTTSSEEEE
T ss_pred CCC---------------EEEEEEECCCCCEEEE
Confidence 322 3488994 56565543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.2e-05 Score=75.90 Aligned_cols=267 Identities=10% Similarity=0.047 Sum_probs=137.3
Q ss_pred CcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCC
Q 010256 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (514)
Q Consensus 126 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 205 (514)
+..+++++.++.+..+|..+|+............ + .+ ..++..+ +.++.++
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~-----~----------~p--~v~~~~v------------~v~~~~g 115 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLS-----G----------GV--GADGGLV------------FVGTEKG 115 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcc-----c----------ce--EEcCCEE------------EEEcCCC
Confidence 4478888899999999999998766555442110 0 11 1123333 5666777
Q ss_pred cEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCc
Q 010256 206 SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEV 284 (514)
Q Consensus 206 ~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 284 (514)
.+..+| ..+.+. +... .-.+.+.+.-.- .+..++.+ .++.+..||.++++...+.....+ ... ....
T Consensus 116 ~l~ald-~~tG~~------~W~~--~~~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~-~~~-~~~~ 183 (377)
T TIGR03300 116 EVIALD-AEDGKE------LWRA--KLSSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTP-ALT-LRGS 183 (377)
T ss_pred EEEEEE-CCCCcE------eeee--ccCceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCC-cee-ecCC
Confidence 777776 222111 1111 001111111011 23455555 899999999987765543211000 000 0000
Q ss_pred eEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccce-eEEEEecCCCEEEE-EeCC
Q 010256 285 ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI-SDIKFARNGRHILS-RDYM 362 (514)
Q Consensus 285 i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~s~~g~~l~~-~~~~ 362 (514)
.+.... ++ .++.+..++.+..+|+++++..++.. +........ .. ....+ ....+ .+..++. +.++
T Consensus 184 -~sp~~~-~~--~v~~~~~~g~v~ald~~tG~~~W~~~--~~~~~g~~~---~~-~~~~~~~~p~~--~~~~vy~~~~~g 251 (377)
T TIGR03300 184 -ASPVIA-DG--GVLVGFAGGKLVALDLQTGQPLWEQR--VALPKGRTE---LE-RLVDVDGDPVV--DGGQVYAVSYQG 251 (377)
T ss_pred -CCCEEE-CC--EEEEECCCCEEEEEEccCCCEeeeec--cccCCCCCc---hh-hhhccCCccEE--ECCEEEEEEcCC
Confidence 111122 23 56778889999999999987654211 000000000 00 00000 11112 2334554 4569
Q ss_pred eEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCC-C
Q 010256 363 TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS-K 441 (514)
Q Consensus 363 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~ 441 (514)
.+..||..+ ++.+....... . .... .++..++.++.||.++.+|..+++.+ ...+.. .
T Consensus 252 ~l~a~d~~t-G~~~W~~~~~~-~----------------~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~-W~~~~~~~ 310 (377)
T TIGR03300 252 RVAALDLRS-GRVLWKRDASS-Y----------------QGPA--VDDNRLYVTDADGVVVALDRRSGSEL-WKNDELKY 310 (377)
T ss_pred EEEEEECCC-CcEEEeeccCC-c----------------cCce--EeCCEEEEECCCCeEEEEECCCCcEE-EccccccC
Confidence 999999987 66554443111 0 0222 24667778889999999999888543 222111 1
Q ss_pred cceeEEEECCCCCceeecCCCCeEEEe
Q 010256 442 NPMRRQVQTPSRPSRPLGSLSGVVRRV 468 (514)
Q Consensus 442 ~~v~~~~~~~~~~~l~s~s~d~~v~i~ 468 (514)
........ .+..|++++.+|.+.++
T Consensus 311 ~~~ssp~i--~g~~l~~~~~~G~l~~~ 335 (377)
T TIGR03300 311 RQLTAPAV--VGGYLVVGDFEGYLHWL 335 (377)
T ss_pred CccccCEE--ECCEEEEEeCCCEEEEE
Confidence 11112122 35688888999999884
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.71 E-value=9.3e-05 Score=65.12 Aligned_cols=183 Identities=16% Similarity=0.168 Sum_probs=105.9
Q ss_pred eEEEEEC-CCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccc-cCCceEEEEEecCCCcEEEEEecC--------C
Q 010256 236 INSISNN-SDGETFISADDLRINLWNLEISNQSFNIVDVKPANMED-LTEVITSAEFHPTHCNMLAYSSSK--------G 305 (514)
Q Consensus 236 v~~~~~~-~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~v~~~p~~~~~l~~~~~d--------g 305 (514)
...+++. +++ .|+.+..+.+.++|..+++.. .+.... ... .....+.+++.|+| ++.++.... |
T Consensus 42 ~~G~~~~~~~g-~l~v~~~~~~~~~d~~~g~~~-~~~~~~---~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g 115 (246)
T PF08450_consen 42 PNGMAFDRPDG-RLYVADSGGIAVVDPDTGKVT-VLADLP---DGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPG 115 (246)
T ss_dssp EEEEEEECTTS-EEEEEETTCEEEEETTTTEEE-EEEEEE---TTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSE
T ss_pred CceEEEEccCC-EEEEEEcCceEEEecCCCcEE-EEeecc---CCCcccCCCceEEEcCCC-CEEEEecCCCcccccccc
Confidence 5567777 565 444453344555688755322 222110 011 34567899999999 766665543 4
Q ss_pred eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-C-CeEEEEEccCCCCcee---eee
Q 010256 306 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVA---TFQ 380 (514)
Q Consensus 306 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~-~~i~iwd~~~~~~~~~---~~~ 380 (514)
.|..++.. ++.. .... .....+.++|+|+++.|+..+ . +.|..+++...+..+. .+.
T Consensus 116 ~v~~~~~~-~~~~----~~~~-------------~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~ 177 (246)
T PF08450_consen 116 SVYRIDPD-GKVT----VVAD-------------GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFI 177 (246)
T ss_dssp EEEEEETT-SEEE----EEEE-------------EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEE
T ss_pred ceEEECCC-CeEE----EEec-------------CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEE
Confidence 56666665 3321 1111 124578999999999887654 3 8899999875333222 111
Q ss_pred eccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEEC-CCCCce
Q 010256 381 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQT-PSRPSR 456 (514)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l 456 (514)
........ .-.+++..+|++.++.-..+.|.+++.+ ++ ....+......++.++|. ++.+.|
T Consensus 178 ~~~~~~g~------------pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~-~~~~i~~p~~~~t~~~fgg~~~~~L 240 (246)
T PF08450_consen 178 DFPGGPGY------------PDGLAVDSDGNLWVADWGGGRIVVFDPD-GK-LLREIELPVPRPTNCAFGGPDGKTL 240 (246)
T ss_dssp E-SSSSCE------------EEEEEEBTTS-EEEEEETTTEEEEEETT-SC-EEEEEE-SSSSEEEEEEESTTSSEE
T ss_pred EcCCCCcC------------CCcceEcCCCCEEEEEcCCCEEEEECCC-cc-EEEEEcCCCCCEEEEEEECCCCCEE
Confidence 11110000 1168999999988887788999999987 53 444555445578889994 554443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.1e-07 Score=81.35 Aligned_cols=155 Identities=17% Similarity=0.241 Sum_probs=109.8
Q ss_pred CCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccc
Q 010256 245 GETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL 324 (514)
Q Consensus 245 ~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 324 (514)
+-.+++|-+..|-+-+++++.+. .+. ..+.|.++.|...+ +++..|+.+|.|..+|+|.+..- ..
T Consensus 225 gyhfs~G~sqqv~L~nvetg~~q---------sf~-sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG----~~ 289 (425)
T KOG2695|consen 225 GYHFSVGLSQQVLLTNVETGHQQ---------SFQ-SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQG----NG 289 (425)
T ss_pred eeeecccccceeEEEEeeccccc---------ccc-cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccC----CC
Confidence 44455567788888898876543 333 46678889999887 89999999999999999976321 00
Q ss_pred eeccCCCCccceeeccccceeEEEEec-CCCEEEEEe-CCeEEEEEccCCCCc---eeeeeeccccccccccccccCCcc
Q 010256 325 FEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRD-YMTLKLWDINMDSGP---VATFQVHEHLRPKLCDLYENDSIF 399 (514)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~-~~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 399 (514)
+ ...---|.+.|+++..-. ++++|++.+ +|+|++||.+. -+. +..+.+|......+
T Consensus 290 ~--------~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~-~K~~~~V~qYeGHvN~~a~l---------- 350 (425)
T KOG2695|consen 290 W--------CAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA-TKCKKSVMQYEGHVNLSAYL---------- 350 (425)
T ss_pred c--------ceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh-hhcccceeeeeccccccccc----------
Confidence 0 011223557888887665 677777765 49999999986 555 78888886543211
Q ss_pred ceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee
Q 010256 400 DKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTL 437 (514)
Q Consensus 400 ~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 437 (514)
-+-..+....++++++|...+||.+..+. +..++
T Consensus 351 ---~~~v~~eeg~I~s~GdDcytRiWsl~~gh-Ll~ti 384 (425)
T KOG2695|consen 351 ---PAHVKEEEGSIFSVGDDCYTRIWSLDSGH-LLCTI 384 (425)
T ss_pred ---ccccccccceEEEccCeeEEEEEecccCc-eeecc
Confidence 24556777889999999999999999884 33443
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.8e-06 Score=79.92 Aligned_cols=258 Identities=14% Similarity=0.154 Sum_probs=158.8
Q ss_pred cccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccc
Q 010256 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (514)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (514)
|...-.++.|+|.| ++|.|+.. .|.+-|..+-+ .+..+.-|. .
T Consensus 14 ~~sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q-----------------------~iqsie~h~------------s 56 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQ-----------------------LIQSIELHQ------------S 56 (1062)
T ss_pred CcccccccccCccc-eEEEecCc-eEEEEehhhhh-----------------------hhhccccCc------------c
Confidence 34447789999988 78888654 68888865444 345566666 7
Q ss_pred ceeEEEEeeCCC----------CcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCC
Q 010256 114 KINKIRWCQSAN----------SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183 (514)
Q Consensus 114 ~v~~i~~~~~~~----------~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 183 (514)
.|+.++|.|.+- .-+++++...|.|.+||...+.....
T Consensus 57 ~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~-------------------------------- 104 (1062)
T KOG1912|consen 57 AVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINW-------------------------------- 104 (1062)
T ss_pred ceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhh--------------------------------
Confidence 799999977321 12455566678888888765431111
Q ss_pred CccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC---CCC-EEEEe-cCCeEEE
Q 010256 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS---DGE-TFISA-DDLRINL 258 (514)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~-~l~s~-~d~~i~i 258 (514)
+..|..++..++|-+ +.+ .|++- ...++.+
T Consensus 105 ---------------------------------------------l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvL 139 (1062)
T KOG1912|consen 105 ---------------------------------------------LSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVL 139 (1062)
T ss_pred ---------------------------------------------hcCCCcchhheeeeeccCcchheeEEecCCcEEEE
Confidence 245556677777754 343 34444 7889999
Q ss_pred EeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCC---CCc--
Q 010256 259 WNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA---PGT-- 333 (514)
Q Consensus 259 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~---~~~-- 333 (514)
|+..+++...+ .........++.+.|-..+.+..-+..|.+.+-+.-.........+.+....+ +..
T Consensus 140 wntdtG~k~Wk--------~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~le 211 (1062)
T KOG1912|consen 140 WNTDTGEKFWK--------YDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLE 211 (1062)
T ss_pred EEccCCceeec--------cccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhh
Confidence 99998876653 22234556678999877666776777777777766543333322333322211 000
Q ss_pred cceeec--cc---------cceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccce
Q 010256 334 RSFFTE--II---------ASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 401 (514)
Q Consensus 334 ~~~~~~--~~---------~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 401 (514)
+....+ ++ -....++|+|.-+.++-... ..+.|+|++. ..++.......+...
T Consensus 212 re~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~-~~~l~vvpier~~ak-------------- 276 (1062)
T KOG1912|consen 212 RETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEY-ECCLAVVPIERGGAK-------------- 276 (1062)
T ss_pred hhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchh-hceeEEEEeccCCcc--------------
Confidence 000000 00 01234677886665554443 7899999997 777777665554322
Q ss_pred eeEEEcCCCC--EEEEEeCCCcEEEEecCC
Q 010256 402 FECCLSGDGG--RVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 402 ~~~~~s~~~~--~l~s~~~dg~i~iwd~~~ 429 (514)
-+.+-|+++ .|++.-.||.+.+|-.+.
T Consensus 277 -fv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 277 -FVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred -eeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 466777664 688899999999997654
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.3e-08 Score=94.76 Aligned_cols=219 Identities=14% Similarity=0.250 Sum_probs=141.0
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
...|...-+|++|+-+.+.|+.|+..|.|++|++.+|... ....+|.
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e-----------------------~s~ncH~---------- 1143 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME-----------------------ESVNCHQ---------- 1143 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCcccc-----------------------ccccccc----------
Confidence 3467889999999999999999999999999999988742 3456776
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCC--CeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTND--KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d--~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (514)
..|+.+.= +.+|..+++.+.- --..+|++..-
T Consensus 1144 --SavT~veP--s~dgs~~Ltsss~S~PlsaLW~~~s~------------------------------------------ 1177 (1516)
T KOG1832|consen 1144 --SAVTLVEP--SVDGSTQLTSSSSSSPLSALWDASST------------------------------------------ 1177 (1516)
T ss_pred --cccccccc--cCCcceeeeeccccCchHHHhccccc------------------------------------------
Confidence 77877764 6777777765432 23456665431
Q ss_pred ccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCce
Q 010256 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (514)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 267 (514)
..++..| ..-.++.|+...+.-+.| ......+||+++...+
T Consensus 1178 ---------------------------------~~~~Hsf-----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l 1219 (1516)
T KOG1832|consen 1178 ---------------------------------GGPRHSF-----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPL 1219 (1516)
T ss_pred ---------------------------------cCccccc-----cccceeehhhhHHHHHhcccccceEEEecccCcHH
Confidence 0111111 223456666554433444 4456789999988766
Q ss_pred eeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEE
Q 010256 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 347 (514)
...+.. ..+....-..+.|+|+. .+++ .|| .+||.+..+. ++.|+.-. .--.-
T Consensus 1220 ~tylt~----~~~~~y~~n~a~FsP~D-~LIl---ndG--vLWDvR~~~a----Ih~FD~ft-------------~~~~G 1272 (1516)
T KOG1832|consen 1220 QTYLTD----TVTSSYSNNLAHFSPCD-TLIL---NDG--VLWDVRIPEA----IHRFDQFT-------------DYGGG 1272 (1516)
T ss_pred HHhcCc----chhhhhhccccccCCCc-ceEe---eCc--eeeeeccHHH----Hhhhhhhe-------------ecccc
Confidence 542211 11112223678899998 6666 455 4799998654 44444321 11223
Q ss_pred EEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEE
Q 010256 348 KFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT 415 (514)
Q Consensus 348 ~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 415 (514)
.|+|.|..++..+ .|||+++ .+.++....-... .+.|+..|..+..
T Consensus 1273 ~FHP~g~eVIINS----EIwD~RT-F~lLh~VP~Ldqc-----------------~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1273 GFHPSGNEVIINS----EIWDMRT-FKLLHSVPSLDQC-----------------AVTFNSTGDVMYA 1318 (1516)
T ss_pred cccCCCceEEeec----hhhhhHH-HHHHhcCccccce-----------------EEEeccCccchhh
Confidence 5899999888866 4999998 7777766544432 6788888876553
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.2e-07 Score=73.45 Aligned_cols=74 Identities=18% Similarity=0.262 Sum_probs=60.7
Q ss_pred cCeEEEEECCCCCE-EEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEE
Q 010256 234 YHINSISNNSDGET-FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (514)
Q Consensus 234 ~~v~~~~~~~~~~~-l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd 311 (514)
..|.+++-+|..+. +++| +||.+-+||.+...... ..+..|+.++..+-|+|..+..|+++++||.+..||
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~-------S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd 252 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPV-------SLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD 252 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchH-------HHHHHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence 34889999997554 5556 89999999998553222 246789999999999999889999999999999999
Q ss_pred cCC
Q 010256 312 MRQ 314 (514)
Q Consensus 312 ~~~ 314 (514)
-.+
T Consensus 253 as~ 255 (319)
T KOG4714|consen 253 AST 255 (319)
T ss_pred CCC
Confidence 875
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.3e-07 Score=78.09 Aligned_cols=150 Identities=13% Similarity=0.079 Sum_probs=98.3
Q ss_pred EEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE---eC-
Q 010256 286 TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR---DY- 361 (514)
Q Consensus 286 ~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~---~~- 361 (514)
..+..+|.+ +++|.+..+....+++++......+....+.... .-+++.|..+......+ +|
T Consensus 66 ~~~~~s~~~-~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~-------------~~~ai~~~~~~~sv~v~dkagD~ 131 (390)
T KOG3914|consen 66 ALVLTSDSG-RLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPK-------------RPTAISFIREDTSVLVADKAGDV 131 (390)
T ss_pred cccccCCCc-eEEEEEeCCCceEEEEEecCCCcceeeeEeeccc-------------CcceeeeeeccceEEEEeecCCc
Confidence 344556666 7888888888877777766543222222222221 22334444444444432 33
Q ss_pred CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCC
Q 010256 362 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASK 441 (514)
Q Consensus 362 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 441 (514)
..+.+|.... .....+.+|-.+ ++.++|+||+++|+++..|..|+|-......-...-.-||+
T Consensus 132 ~~~di~s~~~--~~~~~~lGhvSm---------------l~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~ 194 (390)
T KOG3914|consen 132 YSFDILSADS--GRCEPILGHVSM---------------LLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHK 194 (390)
T ss_pred eeeeeecccc--cCcchhhhhhhh---------------hheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccH
Confidence 6666666553 233344455544 34899999999999999999999988765433334455899
Q ss_pred cceeEEEECCCCCceeecCCCCeEEE
Q 010256 442 NPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 442 ~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.-|..++.-++.. |+|+|.|+++++
T Consensus 195 eFVS~isl~~~~~-LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 195 EFVSTISLTDNYL-LLSGSGDKTLRL 219 (390)
T ss_pred hheeeeeeccCce-eeecCCCCcEEE
Confidence 9999999987744 899999999999
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.4e-08 Score=56.83 Aligned_cols=33 Identities=21% Similarity=0.450 Sum_probs=31.2
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEE
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFE 63 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~ 63 (514)
..+|.+.|++|+|+|++.+|++|+.|+.|++||
T Consensus 7 ~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 7 FRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 458999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.7e-06 Score=76.88 Aligned_cols=243 Identities=16% Similarity=0.140 Sum_probs=136.3
Q ss_pred ccCccCeEEEEECCCCCEEEEe-c-CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCC-cEEEE-EecCC
Q 010256 230 HAHDYHINSISNNSDGETFISA-D-DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC-NMLAY-SSSKG 305 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~~~l~s~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~-~~l~~-~~~dg 305 (514)
..|-..|.+++.+-++.++.+. . |..++++|++.-...-.+ .+.-....+. ...+|... ..++. .-.++
T Consensus 50 raHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dminmi------KL~~lPg~a~-wv~skGd~~s~IAVs~~~sg 122 (558)
T KOG0882|consen 50 RAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMI------KLVDLPGFAE-WVTSKGDKISLIAVSLFKSG 122 (558)
T ss_pred HHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhc------ccccCCCceE-EecCCCCeeeeEEeecccCC
Confidence 5677888899999999999996 5 999999999855432111 1111122221 11222211 13333 33478
Q ss_pred eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCC-----ceeee
Q 010256 306 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSG-----PVATF 379 (514)
Q Consensus 306 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~-----~~~~~ 379 (514)
.+.++|-....+.. .. +-.-|.++|..+.+.+-+..+++.+. |.|.-|....+.+ ....+
T Consensus 123 ~i~VvD~~~d~~q~---~~-----------fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~ 188 (558)
T KOG0882|consen 123 KIFVVDGFGDFCQD---GY-----------FKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFEL 188 (558)
T ss_pred CcEEECCcCCcCcc---ce-----------ecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccc
Confidence 89999976654221 11 12336689999999999999999875 9999999872111 11111
Q ss_pred eeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeec
Q 010256 380 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG 459 (514)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 459 (514)
+.... +-.+...+. ...++.|+|+|..+.+-+.|..|++++.++++ +.+.+...... ..+.|..++-+.
T Consensus 189 K~eTd----Ly~f~K~Kt--~pts~Efsp~g~qistl~~DrkVR~F~~KtGk-lvqeiDE~~t~---~~~q~ks~y~l~- 257 (558)
T KOG0882|consen 189 KHETD----LYGFPKAKT--EPTSFEFSPDGAQISTLNPDRKVRGFVFKTGK-LVQEIDEVLTD---AQYQPKSPYGLM- 257 (558)
T ss_pred cccch----hhccccccc--CccceEEccccCcccccCcccEEEEEEeccch-hhhhhhccchh---hhhccccccccc-
Confidence 11111 111111111 12389999999999999999999999999874 33333321110 011111111000
Q ss_pred CCCCeEEEeeCCCCCccccCCccccccc-ceEEEEEcCCCCEEEEEecCcEEEEe
Q 010256 460 SLSGVVRRVKGADNSALDANGNAFDFSM-KLLHLAWHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 460 s~d~~v~i~~~~~~~~~~~~~~~~~~~~-~v~~~~~spd~~~l~~~~~~~~~i~~ 513 (514)
.+.+ +.+.. .......+.. .-+.+.|...+++|+-++-=++.+++
T Consensus 258 ----~Vel--gRRma---verelek~~~~~~~~~~fdes~~flly~t~~gikvin 303 (558)
T KOG0882|consen 258 ----HVEL--GRRMA---VERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVIN 303 (558)
T ss_pred ----eeeh--hhhhh---HHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEE
Confidence 0011 11111 1111111222 33678899999999988877777664
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.9e-05 Score=65.00 Aligned_cols=254 Identities=13% Similarity=0.125 Sum_probs=143.4
Q ss_pred cceEEEEEcC-CCCeEEEecCCC-eEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccc
Q 010256 36 DIISAIEFDK-SGDHLATGDRGG-RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (514)
Q Consensus 36 ~~V~~~~~s~-~g~~l~tg~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (514)
.....++.+| .+..++.+..-| ...+||..+++... .+ ..|+. ..|.||.
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~----~~--------~a~~g---RHFyGHg------------- 56 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQ----RL--------WAPPG---RHFYGHG------------- 56 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceee----EE--------cCCCC---CEEecCE-------------
Confidence 4456788999 667788887766 47889998877531 00 01111 2466775
Q ss_pred ceeEEEEeeCCCCcEEEEee-----CCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccc
Q 010256 114 KINKIRWCQSANSALYLLST-----NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (514)
Q Consensus 114 ~v~~i~~~~~~~~~~l~s~~-----~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (514)
.| +++|++|++.- ..|.|-|||...+ ...+-++... . ..+..+.+.|||+.|.+
T Consensus 57 -----~f--s~dG~~LytTEnd~~~g~G~IgVyd~~~~-~~ri~E~~s~--------G-----IGPHel~l~pDG~tLvV 115 (305)
T PF07433_consen 57 -----VF--SPDGRLLYTTENDYETGRGVIGVYDAARG-YRRIGEFPSH--------G-----IGPHELLLMPDGETLVV 115 (305)
T ss_pred -----EE--cCCCCEEEEeccccCCCcEEEEEEECcCC-cEEEeEecCC--------C-----cChhhEEEcCCCCEEEE
Confidence 46 67888999863 4589999999932 2333222211 1 12226788999987755
Q ss_pred ccCCCCCC------cccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCe------
Q 010256 189 NFGCASND------SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLR------ 255 (514)
Q Consensus 189 ~~~~~~~~------~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~------ 255 (514)
..+...+. .+-....+.++..-| ...............-|.-.|..++++++|..++.. ..|.
T Consensus 116 ANGGI~Thpd~GR~kLNl~tM~psL~~ld----~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~P 191 (305)
T PF07433_consen 116 ANGGIETHPDSGRAKLNLDTMQPSLVYLD----ARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPP 191 (305)
T ss_pred EcCCCccCcccCceecChhhcCCceEEEe----cCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCC
Confidence 44332111 111122222332221 011000000000013466789999999999888775 3322
Q ss_pred -EEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEE-EEEecCCeEEEEEcCCCccccccccceeccCCCCc
Q 010256 256 -INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNML-AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT 333 (514)
Q Consensus 256 -i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 333 (514)
|-+++.. + ....+...+.........+-+|++++++ .++ +++=..+.+.+||..++..... ...
T Consensus 192 Lva~~~~g--~-~~~~~~~p~~~~~~l~~Y~gSIa~~~~g-~~ia~tsPrGg~~~~~d~~tg~~~~~----~~l------ 257 (305)
T PF07433_consen 192 LVALHRRG--G-ALRLLPAPEEQWRRLNGYIGSIAADRDG-RLIAVTSPRGGRVAVWDAATGRLLGS----VPL------ 257 (305)
T ss_pred eEEEEcCC--C-cceeccCChHHHHhhCCceEEEEEeCCC-CEEEEECCCCCEEEEEECCCCCEeec----ccc------
Confidence 3333332 2 1232222222334557889999999998 555 4555678899999999886321 111
Q ss_pred cceeeccccceeEEEEecCCCEEEEEeCCeEE
Q 010256 334 RSFFTEIIASISDIKFARNGRHILSRDYMTLK 365 (514)
Q Consensus 334 ~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~ 365 (514)
..+..++-.+++ ++++...|.+.
T Consensus 258 --------~D~cGva~~~~~-f~~ssG~G~~~ 280 (305)
T PF07433_consen 258 --------PDACGVAPTDDG-FLVSSGQGQLI 280 (305)
T ss_pred --------CceeeeeecCCc-eEEeCCCccEE
Confidence 357777777776 67665555543
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.57 E-value=9.3e-05 Score=64.89 Aligned_cols=155 Identities=14% Similarity=0.126 Sum_probs=81.4
Q ss_pred EEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccce
Q 010256 247 TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF 325 (514)
Q Consensus 247 ~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 325 (514)
.++.+ .++.++.+|..+++...+..... ..... ..........+ ..++.+..++.|..+|+++|+.... +
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~---~~~~~-~~~~~~~~~~~-~~~~~~~~~g~l~~~d~~tG~~~w~----~ 148 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTS---SPPAG-VRSSSSPAVDG-DRLYVGTSSGKLVALDPKTGKLLWK----Y 148 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-S---SCTCS-TB--SEEEEET-TEEEEEETCSEEEEEETTTTEEEEE----E
T ss_pred ccccccceeeeEecccCCcceeeeecccc---ccccc-cccccCceEec-CEEEEEeccCcEEEEecCCCcEEEE----e
Confidence 33444 77789999988777665421110 00011 11222222235 6788888899999999999987543 2
Q ss_pred eccCCCCccceeeccccceeEEEEecCCCEEEEEeCCe-EEEEEccCCCCceeeeeeccccccccccccccCCccceeeE
Q 010256 326 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMT-LKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC 404 (514)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 404 (514)
.....+.... +. ....+..-....++..+++..++. +.+ |+.+ ++.+-... .... ..
T Consensus 149 ~~~~~~~~~~-~~-~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~t-g~~~w~~~-~~~~-----------------~~ 206 (238)
T PF13360_consen 149 PVGEPRGSSP-IS-SFSDINGSPVISDGRVYVSSGDGRVVAV-DLAT-GEKLWSKP-ISGI-----------------YS 206 (238)
T ss_dssp ESSTT-SS---EE-EETTEEEEEECCTTEEEEECCTSSEEEE-ETTT-TEEEEEEC-SS-E-----------------CE
T ss_pred ecCCCCCCcc-ee-eecccccceEEECCEEEEEcCCCeEEEE-ECCC-CCEEEEec-CCCc-----------------cC
Confidence 2111000000 00 011122222223454444444554 555 8887 55332222 1110 11
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCCce
Q 010256 405 CLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (514)
Q Consensus 405 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 432 (514)
....++..|+.++.++.|..||+++++.
T Consensus 207 ~~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 207 LPSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp CEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred CceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 2456778888888999999999999843
|
... |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.9e-05 Score=67.63 Aligned_cols=202 Identities=14% Similarity=0.114 Sum_probs=124.9
Q ss_pred CceEEEEEecCCCcEEEEEecCCe-EEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-
Q 010256 283 EVITSAEFHPTHCNMLAYSSSKGS-IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD- 360 (514)
Q Consensus 283 ~~i~~v~~~p~~~~~l~~~~~dg~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~- 360 (514)
.....++.+|..+..++.+-.-|+ ..+||.++++.. ..+.... ...|.+| -.||+||++|++..
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~----~~~~a~~----gRHFyGH------g~fs~dG~~LytTEn 70 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLL----QRLWAPP----GRHFYGH------GVFSPDGRLLYTTEN 70 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCcee----eEEcCCC----CCEEecC------EEEcCCCCEEEEecc
Confidence 344577889966577777777664 678999998863 2222211 2234444 57999999999841
Q ss_pred -----CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeC-----------------
Q 010256 361 -----YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY----------------- 418 (514)
Q Consensus 361 -----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~----------------- 418 (514)
.|.|-|||.....+.+.++..+.--.- .+.+.|||+.|+.+..
T Consensus 71 d~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPH---------------el~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t 135 (305)
T PF07433_consen 71 DYETGRGVIGVYDAARGYRRIGEFPSHGIGPH---------------ELLLMPDGETLVVANGGIETHPDSGRAKLNLDT 135 (305)
T ss_pred ccCCCcEEEEEEECcCCcEEEeEecCCCcChh---------------hEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence 389999999843555666655542211 6889999987776532
Q ss_pred -CCcEEEEecCCCceee-eee--cCCCcceeEEEECCCCCceeecCCCCeEEE-------eeCCC-CCccccCCc-cccc
Q 010256 419 -SNLFRVFGCSEGSAES-TTL--EASKNPMRRQVQTPSRPSRPLGSLSGVVRR-------VKGAD-NSALDANGN-AFDF 485 (514)
Q Consensus 419 -dg~i~iwd~~~~~~~~-~~~--~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i-------~~~~~-~~~~~~~~~-~~~~ 485 (514)
+-++-+-|..+|+.+. ..+ .-|..+++.+++.++|..+...-..+.-.- .+... +.-...... ....
T Consensus 136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l 215 (305)
T PF07433_consen 136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRL 215 (305)
T ss_pred cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhh
Confidence 1234445556664332 335 347778888888888766555433332111 22222 111111111 1235
Q ss_pred ccceEEEEEcCCCCEEEEEe--cCcEEEEe
Q 010256 486 SMKLLHLAWHPSENSIACAA--SNSLYMYY 513 (514)
Q Consensus 486 ~~~v~~~~~spd~~~l~~~~--~~~~~i~~ 513 (514)
...|-+|++++++.++++.+ .+.+.+|.
T Consensus 216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d 245 (305)
T PF07433_consen 216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWD 245 (305)
T ss_pred CCceEEEEEeCCCCEEEEECCCCCEEEEEE
Confidence 68899999999999999888 67777774
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.6e-05 Score=79.75 Aligned_cols=239 Identities=14% Similarity=0.114 Sum_probs=133.8
Q ss_pred cCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEc
Q 010256 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~ 312 (514)
+.|.++.|..+.+.++.+ .+|.|.+-|.++..... ...-...|.+++|+||+ .+++..+..+++.+-+-
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei---------vg~vd~GI~aaswS~De-e~l~liT~~~tll~mT~ 138 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEI---------VGNVDNGISAASWSPDE-ELLALITGRQTLLFMTK 138 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceee---------eeeccCceEEEeecCCC-cEEEEEeCCcEEEEEec
Confidence 679999999999888888 89999999887554321 12246789999999999 88888888877765432
Q ss_pred CCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccc
Q 010256 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDL 392 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 392 (514)
+...+.. +.+..... ..+..-.+-|-..... +-|+.|+....+.....+.+.....+.+
T Consensus 139 -~f~~i~E--~~L~~d~~---------~~sk~v~VGwGrkeTq-frgs~gr~~~~~~~~~ek~~~~~~~~~~-------- 197 (1265)
T KOG1920|consen 139 -DFEPIAE--KPLDADDE---------RKSKFVNVGWGRKETQ-FRGSEGRQAARQKIEKEKALEQIEQDDH-------- 197 (1265)
T ss_pred -cccchhc--cccccccc---------cccccceeccccccee-eecchhhhcccccccccccccchhhccC--------
Confidence 2222110 00100000 0011222223211101 1112122222111110111111111111
Q ss_pred cccCCccceeeEEEcCCCCEEEEEe----CC-CcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecC---CCCe
Q 010256 393 YENDSIFDKFECCLSGDGGRVATGS----YS-NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGS---LSGV 464 (514)
Q Consensus 393 ~~~~~~~~v~~~~~s~~~~~l~s~~----~d-g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s---~d~~ 464 (514)
.++++|--||+++|+.. .+ ..|+|||.+ | .+..+-+....--.++.|.|.|.++++-. .|..
T Consensus 198 --------~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g-~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~ 267 (1265)
T KOG1920|consen 198 --------KTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-G-ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSD 267 (1265)
T ss_pred --------CceEEEccCCcEEEEEEEeccCCceeEEEeccc-c-hhhcccCcccccccceeecCCCCeEeeeeecCCCCc
Confidence 12799999999998732 23 789999987 3 33223333333345789999999998763 3455
Q ss_pred EEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEE---EecCc-EEEEe
Q 010256 465 VRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIAC---AASNS-LYMYY 513 (514)
Q Consensus 465 v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~---~~~~~-~~i~~ 513 (514)
|.+.....+...++..........|..++|+.++..||+ ...+. +.+|.
T Consensus 268 IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt 320 (1265)
T KOG1920|consen 268 IVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWT 320 (1265)
T ss_pred EEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEE
Confidence 666333322222222222222445999999999999997 44555 88885
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.9e-07 Score=75.94 Aligned_cols=135 Identities=15% Similarity=0.142 Sum_probs=93.5
Q ss_pred CccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEec-CCCcEEEEEecCCeEEE
Q 010256 232 HDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGSIRL 309 (514)
Q Consensus 232 h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p-~~~~~l~~~~~dg~i~~ 309 (514)
.++.|.++.|...++++..| ..|.|..+|++...+-- ..+...--|...|+++..-. ++ ..|++.+.+|.|++
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~----~~~a~rlyh~Ssvtslq~Lq~s~-q~LmaS~M~gkikL 325 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGN----GWCAQRLYHDSSVTSLQILQFSQ-QKLMASDMTGKIKL 325 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCC----CcceEEEEcCcchhhhhhhcccc-ceEeeccCcCceeE
Confidence 55788899999989999999 99999999999662210 00112223788899988776 44 78899999999999
Q ss_pred EEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEE-EeCCeEEEEEccCCCCceeeeeecc
Q 010256 310 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHE 383 (514)
Q Consensus 310 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~ 383 (514)
||+|.-+... -+..+++|-.. ..-.-+.+.+....+++ |+|...+||.++. +..+.+++...
T Consensus 326 yD~R~~K~~~-~V~qYeGHvN~----------~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~-ghLl~tipf~~ 388 (425)
T KOG2695|consen 326 YDLRATKCKK-SVMQYEGHVNL----------SAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS-GHLLCTIPFPY 388 (425)
T ss_pred eeehhhhccc-ceeeeeccccc----------ccccccccccccceEEEccCeeEEEEEeccc-CceeeccCCCC
Confidence 9999765422 25556655321 11111233455555665 5669999999997 88888776554
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00013 Score=67.87 Aligned_cols=281 Identities=16% Similarity=0.141 Sum_probs=137.0
Q ss_pred ceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccC--Ccccccccc---------cc---ccc--C----Cccceeeeee
Q 010256 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNG--GQRRDLEMM---------DY---SMS--R----HPEFRYKTEF 96 (514)
Q Consensus 37 ~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~--~~~~~~~~~---------~~---~~~--~----~~~~~~~~~~ 96 (514)
.|+.+.|+++.-.||+|...|.|.||.+...+..+ .....++.. .. .+. . ...+.....+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58999999998899999999999999987665432 000111100 00 000 0 0011112222
Q ss_pred ccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCc
Q 010256 97 QSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIP 176 (514)
Q Consensus 97 ~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 176 (514)
+.. .+.|++++. +.- .+++.|..+|.+.|.|++...+........+.........+. .
T Consensus 83 ~~~------------~g~vtal~~--S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt-------~ 140 (395)
T PF08596_consen 83 DAK------------QGPVTALKN--SDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVT-------S 140 (395)
T ss_dssp ---------------S-SEEEEEE---BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EE-------E
T ss_pred ecc------------CCcEeEEec--CCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCee-------E
Confidence 222 388999998 333 499999999999999999988776655443111111122222 2
Q ss_pred eeec-----cCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEE-ECCC-C----
Q 010256 177 KSYM-----ANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSIS-NNSD-G---- 245 (514)
Q Consensus 177 ~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~-~~~~-~---- 245 (514)
+.|+ .|+ .+...+++|...|.+.+|.++-.............. ..+.++|..+. ++.+ |
T Consensus 141 ieF~vm~~~~D~---------ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~-~~~~~~i~~I~~i~~~~G~~a~ 210 (395)
T PF08596_consen 141 IEFSVMTLGGDG---------YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGAT-TNHDSPILSIIPINADTGESAL 210 (395)
T ss_dssp EEEEEEE-TTSS---------SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE---SS----EEEEEETTT--B-B
T ss_pred EEEEEEecCCCc---------ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeecc-ccCCCceEEEEEEECCCCCccc
Confidence 3332 122 111234778888999999855333322222222221 34556666655 4222 1
Q ss_pred ----------------CEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEe-----cCCCcEEEEEecC
Q 010256 246 ----------------ETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH-----PTHCNMLAYSSSK 304 (514)
Q Consensus 246 ----------------~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~-----p~~~~~l~~~~~d 304 (514)
.+++.+.+..++++...+.+...+. + ........+.+- ..+ ..|++-..+
T Consensus 211 At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~-------~-~~~~~~~~~~vv~~~~~~~~-~~Lv~l~~~ 281 (395)
T PF08596_consen 211 ATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKS-------F-DDPFLCSSASVVPTISRNGG-YCLVCLFNN 281 (395)
T ss_dssp -BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE---------SS-EEEEEEEEEEEE-EEEE-EEEEEEETT
T ss_pred CchhHhhccccCCCcCcEEEEEcccceEEEeCCCCccccee-------e-ccccccceEEEEeecccCCc-eEEEEEECC
Confidence 1455557888999998866654432 1 111122333442 234 688888999
Q ss_pred CeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEcc
Q 010256 305 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDIN 370 (514)
Q Consensus 305 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~ 370 (514)
|.+++|.+..-+.+ ....... ......+....++++|+.++-.+...+.++.+-
T Consensus 282 G~i~i~SLP~Lkei----~~~~l~~--------~~d~~~~~~ssis~~Gdi~~~~gpsE~~l~sv~ 335 (395)
T PF08596_consen 282 GSIRIYSLPSLKEI----KSVSLPP--------PLDSRRLSSSSISRNGDIFYWTGPSEIQLFSVW 335 (395)
T ss_dssp SEEEEEETTT--EE----EEEE-SS-----------HHHHTT-EE-TTS-EEEE-SSSEEEEEEEE
T ss_pred CcEEEEECCCchHh----hcccCCC--------ccccccccccEECCCCCEEEEeCcccEEEEEEE
Confidence 99999999875542 2222211 011134556778999998877655455544443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00067 Score=68.75 Aligned_cols=240 Identities=15% Similarity=0.189 Sum_probs=129.6
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccce
Q 010256 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (514)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (514)
+.|.++.|-.++.-++.+..+|.|.+-|.++.... ..|. ++..|
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-------------------------ivg~-----------vd~GI 112 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE-------------------------IVGN-----------VDNGI 112 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccccee-------------------------eeee-----------ccCce
Confidence 58999999999999999999999999887655431 1111 12779
Q ss_pred eEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCC
Q 010256 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (514)
Q Consensus 116 ~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (514)
.+++| ++|+..++..+..+++.+-.- +-.+.....+..... ..+ ....+-|-.....
T Consensus 113 ~aasw--S~Dee~l~liT~~~tll~mT~-~f~~i~E~~L~~d~~--~~s--------k~v~VGwGrkeTq---------- 169 (1265)
T KOG1920|consen 113 SAASW--SPDEELLALITGRQTLLFMTK-DFEPIAEKPLDADDE--RKS--------KFVNVGWGRKETQ---------- 169 (1265)
T ss_pred EEEee--cCCCcEEEEEeCCcEEEEEec-cccchhccccccccc--ccc--------ccceeccccccee----------
Confidence 99999 567778888888777765432 111111111100000 000 0001111111111
Q ss_pred CcccCCCCCCcEEeceeeccccccccccccccccc--cCccCeEEEEECCCCCEEEEe-----cC-CeEEEEeccCCCce
Q 010256 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAH--AHDYHINSISNNSDGETFISA-----DD-LRINLWNLEISNQS 267 (514)
Q Consensus 196 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~-----~d-~~i~iwd~~~~~~~ 267 (514)
+.|+. |..... +. ........ .-.+.=..|+|--||+++++. .+ ..|++||.+ +. .
T Consensus 170 ---frgs~-gr~~~~------~~----~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~-L 233 (1265)
T KOG1920|consen 170 ---FRGSE-GRQAAR------QK----IEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GA-L 233 (1265)
T ss_pred ---eecch-hhhccc------cc----ccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-ch-h
Confidence 10000 000000 00 00000000 011122468999999999972 34 899999987 32 1
Q ss_pred eeeeccCCCcccccCCceEEEEEecCCCcEEEEEe---cCCeEEEEEcCCCccccccccceeccCCCCccceeeccccce
Q 010256 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS---SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~---~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 344 (514)
-. .-+.....=.+++|-|.| .++++-- .|+.|.+|.-+ |..-......+... ...+
T Consensus 234 ns-------~se~~~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~d------------e~~v 292 (1265)
T KOG1920|consen 234 NS-------TSEPVEGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLD------------EKEV 292 (1265)
T ss_pred hc-------ccCcccccccceeecCCC-CeEeeeeecCCCCcEEEEecC-CccccccccCCccc------------ccch
Confidence 11 111122333578999998 7777643 35678888753 33211111111111 1348
Q ss_pred eEEEEecCCCEEEE---EeC-CeEEEEEccC
Q 010256 345 SDIKFARNGRHILS---RDY-MTLKLWDINM 371 (514)
Q Consensus 345 ~~~~~s~~g~~l~~---~~~-~~i~iwd~~~ 371 (514)
..++|+.++..|+. ... ..|++|-+.+
T Consensus 293 e~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 293 EELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred heeeecCCCCceeeeecccccceEEEEEecC
Confidence 99999999999997 233 5699999875
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00018 Score=69.84 Aligned_cols=117 Identities=11% Similarity=0.087 Sum_probs=78.4
Q ss_pred ccCeEEEEECCCCCEEEEe-cCCeEEEEe--ccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEE
Q 010256 233 DYHINSISNNSDGETFISA-DDLRINLWN--LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 309 (514)
Q Consensus 233 ~~~v~~~~~~~~~~~l~s~-~d~~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~ 309 (514)
..++.+++++.+-+.+|.| .+|.|.++. +...+.... .-......+|+.+.+..++ ..++-...-..|.+
T Consensus 125 ~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~------~~~~~~~~pITgL~~~~d~-~s~lFv~Tt~~V~~ 197 (933)
T KOG2114|consen 125 PSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQ------DYSHRGKEPITGLALRSDG-KSVLFVATTEQVML 197 (933)
T ss_pred CCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccce------eeeccCCCCceeeEEecCC-ceeEEEEecceeEE
Confidence 4678899999999999999 999999984 321111111 0122357899999999988 44333444568899
Q ss_pred EEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccC
Q 010256 310 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINM 371 (514)
Q Consensus 310 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~ 371 (514)
|.+...... .+ .+..|..+..|..|++...-++++....+.+|+...
T Consensus 198 y~l~gr~p~---~~------------~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~ 244 (933)
T KOG2114|consen 198 YSLSGRTPS---LK------------VLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDG 244 (933)
T ss_pred EEecCCCcc---ee------------eeccCCccceeeecCCCCccEEEecCceEEEEcCCC
Confidence 998743311 11 234455688999998765546666666899999874
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.9e-06 Score=50.69 Aligned_cols=37 Identities=27% Similarity=0.644 Sum_probs=32.5
Q ss_pred eeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEE
Q 010256 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWK 142 (514)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~ 142 (514)
....+.+|. ..|++|+|+| ++.+|++++.|+.|++||
T Consensus 3 ~~~~~~~h~------------~~i~~i~~~~--~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHS------------SSINSIAWSP--DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSS------------SSEEEEEEET--TSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCC------------CcEEEEEEec--ccccceeeCCCCEEEEEC
Confidence 557789998 8999999965 567999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00095 Score=63.34 Aligned_cols=182 Identities=10% Similarity=0.037 Sum_probs=91.5
Q ss_pred EEEEe-cCCeEEEEeccCCCceeeeeccCC-CcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccc
Q 010256 247 TFISA-DDLRINLWNLEISNQSFNIVDVKP-ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL 324 (514)
Q Consensus 247 ~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 324 (514)
.++.+ .++.+..+|.++++...+.-...+ ........+ ... ++ .++.++.+|.+..+|..+++..++..
T Consensus 162 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP----~v~-~~--~v~~~~~~g~v~a~d~~~G~~~W~~~-- 232 (394)
T PRK11138 162 LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAP----ATA-FG--GAIVGGDNGRVSAVLMEQGQLIWQQR-- 232 (394)
T ss_pred EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCC----EEE-CC--EEEEEcCCCEEEEEEccCChhhheec--
Confidence 34445 788888888887776544310000 000011111 111 23 46667889999999999988654311
Q ss_pred eeccCCCCccceeeccccceeEEEEec---CCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccce
Q 010256 325 FEEQEAPGTRSFFTEIIASISDIKFAR---NGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 401 (514)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~i~~~~~s~---~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 401 (514)
+........ + .....+.-+| ++..++.+.++.+..+|..+ ++.+-.......
T Consensus 233 ~~~~~~~~~---~----~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~t-G~~~W~~~~~~~----------------- 287 (394)
T PRK11138 233 ISQPTGATE---I----DRLVDVDTTPVVVGGVVYALAYNGNLVALDLRS-GQIVWKREYGSV----------------- 287 (394)
T ss_pred cccCCCccc---h----hcccccCCCcEEECCEEEEEEcCCeEEEEECCC-CCEEEeecCCCc-----------------
Confidence 000000000 0 0001111112 34444444568999999987 665433221100
Q ss_pred eeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCC-cceeEEEECCCCCceeecCCCCeEEE
Q 010256 402 FECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASK-NPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 402 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
..+.. ++..|+.++.+|.++.+|..+++.+- ....-. ....+... .+..|..++.||.+..
T Consensus 288 ~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W-~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ 349 (394)
T PRK11138 288 NDFAV--DGGRIYLVDQNDRVYALDTRGGVELW-SQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHW 349 (394)
T ss_pred cCcEE--ECCEEEEEcCCCeEEEEECCCCcEEE-cccccCCCcccCCEE--ECCEEEEEeCCCEEEE
Confidence 01222 45667778889999999998874321 111100 11111111 2456777888898887
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.8e-05 Score=75.86 Aligned_cols=193 Identities=13% Similarity=0.113 Sum_probs=127.4
Q ss_pred cccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccc
Q 010256 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (514)
+...+.++|++++ +++|+.|+.+|.|++++..... .+...|.
T Consensus 36 ~~~~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-------------------------~~~~~~s----------- 77 (846)
T KOG2066|consen 36 FLQNDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-------------------------KTNFDHS----------- 77 (846)
T ss_pred HHhhhHHHHHHhh--cceeeeccccceEEEEecCCcc-------------------------ccccccc-----------
Confidence 4456889999998 7899999999999999975331 1111222
Q ss_pred ccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccC-----CCcc
Q 010256 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN-----GGCG 186 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-----~~~l 186 (514)
.. ..+|.++++|+.||+|.|-.+-+.+......++.... ++++.|+ .+..
T Consensus 78 -~~--------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpik----------------sial~Pd~~~~~sk~f 132 (846)
T KOG2066|consen 78 -SS--------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIK----------------SIALHPDFSRQQSKQF 132 (846)
T ss_pred -cc--------ccCCceEEEecCCCcEEEeeccCCccceeEecCCcce----------------eEEeccchhhhhhhhe
Confidence 11 4568899999999999999998887666666653322 7788887 3333
Q ss_pred ccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCc
Q 010256 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQ 266 (514)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~ 266 (514)
++|+..| +.++.--|- +......+..-.++|.++.|. |+++|-++|--|++||+.+.+.
T Consensus 133 ------------v~GG~ag-lvL~er~wl------gnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv~vyd~~~~~~ 191 (846)
T KOG2066|consen 133 ------------VSGGMAG-LVLSERNWL------GNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGVKVYDTPTRQR 191 (846)
T ss_pred ------------eecCcce-EEEehhhhh------cCccceeeecCccceEEEEec--CcEEEEecCCCcEEEeccccce
Confidence 7788887 655441111 111111235667899999995 7899989666699999986655
Q ss_pred eeeeeccCCCc-ccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCC
Q 010256 267 SFNIVDVKPAN-MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 314 (514)
Q Consensus 267 ~~~~~~~~~~~-~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~ 314 (514)
...+ ++.. ..........+.|.++. .|+.|-.| +|+|..++.
T Consensus 192 l~~i---~~p~~~~R~e~fpphl~W~~~~--~LVIGW~d-~v~i~~I~~ 234 (846)
T KOG2066|consen 192 LTNI---PPPSQSVRPELFPPHLHWQDED--RLVIGWGD-SVKICSIKK 234 (846)
T ss_pred eecc---CCCCCCCCcccCCCceEecCCC--eEEEecCC-eEEEEEEec
Confidence 4433 2211 11122334567888875 56666554 788888873
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00033 Score=65.53 Aligned_cols=76 Identities=14% Similarity=0.246 Sum_probs=61.8
Q ss_pred cCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEE
Q 010256 231 AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 309 (514)
Q Consensus 231 ~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~ 309 (514)
.....|.+.+++|+.+.++.| .||+|.+||...+-.. +....-.++.++|+|+| .++++|+..|.+.+
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~----------~~ka~~~P~~iaWHp~g-ai~~V~s~qGelQ~ 325 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL----------LAKAEFIPTLIAWHPDG-AIFVVGSEQGELQC 325 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee----------eeeecccceEEEEcCCC-cEEEEEcCCceEEE
Confidence 455789999999999999999 9999999998744322 12234557899999999 89999999999999
Q ss_pred EEcCCCcc
Q 010256 310 IDMRQSAL 317 (514)
Q Consensus 310 wd~~~~~~ 317 (514)
||+.-+..
T Consensus 326 FD~ALspi 333 (545)
T PF11768_consen 326 FDMALSPI 333 (545)
T ss_pred EEeecCcc
Confidence 99876543
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.9e-05 Score=72.54 Aligned_cols=178 Identities=15% Similarity=0.131 Sum_probs=114.8
Q ss_pred cccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCC
Q 010256 197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP 275 (514)
Q Consensus 197 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~ 275 (514)
+++.|...|.+.+++ .... +... ..|+.. ..+|+++++| .||+|.|-.+-+.+....
T Consensus 51 ~~~~GtH~g~v~~~~----~~~~----~~~~--~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~------ 108 (846)
T KOG2066|consen 51 FFALGTHRGAVYLTT----CQGN----PKTN--FDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ------ 108 (846)
T ss_pred eeeeccccceEEEEe----cCCc----cccc--cccccc------ccCCceEEEecCCCcEEEeeccCCcccee------
Confidence 448888899998776 1110 0001 222222 5579999999 999999998887665432
Q ss_pred CcccccCCceEEEEEecC----CCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 276 ANMEDLTEVITSAEFHPT----HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 276 ~~~~~~~~~i~~v~~~p~----~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
.....++.+++++|+ ..+.+++|+..| +.++.-+-.... ... .+..-.++|.++.|.
T Consensus 109 ---~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk----~~v----------~l~~~eG~I~~i~W~- 169 (846)
T KOG2066|consen 109 ---YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK----DSV----------VLSEGEGPIHSIKWR- 169 (846)
T ss_pred ---EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc----cce----------eeecCccceEEEEec-
Confidence 224677899999998 236899999988 777664322111 011 123334799999997
Q ss_pred CCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecC
Q 010256 352 NGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 352 ~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 428 (514)
|.++|-++|-.|+|||+.. ++.+..++.....+. .+.+. ..+.|.++.++++ |+..+|+|..++
T Consensus 170 -g~lIAWand~Gv~vyd~~~-~~~l~~i~~p~~~~R--~e~fp-------phl~W~~~~~LVI--GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 170 -GNLIAWANDDGVKVYDTPT-RQRLTNIPPPSQSVR--PELFP-------PHLHWQDEDRLVI--GWGDSVKICSIK 233 (846)
T ss_pred -CcEEEEecCCCcEEEeccc-cceeeccCCCCCCCC--cccCC-------CceEecCCCeEEE--ecCCeEEEEEEe
Confidence 7899999987799999987 666655544332211 11111 1588987776554 344578888887
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0022 Score=59.67 Aligned_cols=219 Identities=8% Similarity=0.054 Sum_probs=102.7
Q ss_pred EEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCC
Q 010256 237 NSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 314 (514)
Q Consensus 237 ~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~ 314 (514)
.++.|+||+++|+.. ++..|+.+.+-..... ....-.+..+.+---| .-- ..-.+.++|+.+
T Consensus 104 ~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~-----------~~~yp~~~~~~YPk~G-~~n----p~v~l~v~~~~~ 167 (353)
T PF00930_consen 104 SAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPP-----------DSQYPEVESIRYPKAG-DPN----PRVSLFVVDLAS 167 (353)
T ss_dssp BSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSS-----------TESS-EEEEEE--BTT-S-------EEEEEEEESSS
T ss_pred cceEECCCCCEEEEEEECCcCCceEEeeccCCc-----------cccCCcccccccCCCC-CcC----CceEEEEEECCC
Confidence 468899999999987 6777766655321110 0001134445543223 111 112456788877
Q ss_pred CccccccccceeccCCCCccceeeccccceeEEEEecCCC-EEEE-Ee---C-CeEEEEEccCCCCceeeeeecc-cccc
Q 010256 315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR-HILS-RD---Y-MTLKLWDINMDSGPVATFQVHE-HLRP 387 (514)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~-~~---~-~~i~iwd~~~~~~~~~~~~~~~-~~~~ 387 (514)
++... +.... .+..-...+..+.|.++++ +++. .+ . ..+.+.|..+ +.......... ..+.
T Consensus 168 ~~~~~-----~~~~~------~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~t-g~~~~~~~e~~~~Wv~ 235 (353)
T PF00930_consen 168 GKTTE-----LDPPN------SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDAST-GETRVVLEETSDGWVD 235 (353)
T ss_dssp TCCCE-----E---H------HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECT-TTCEEEEEEESSSSSS
T ss_pred CcEEE-----eeecc------ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCC-CceeEEEEecCCccee
Confidence 66421 11100 0011124689999999999 4443 22 2 4566677765 44333332222 1111
Q ss_pred ccccccccCCccceeeEEEc-CCCC-EEEEEeCCCcEEE--EecCCCceeeeeecCCCcceeE-EEECCCCCce-eecCC
Q 010256 388 KLCDLYENDSIFDKFECCLS-GDGG-RVATGSYSNLFRV--FGCSEGSAESTTLEASKNPMRR-QVQTPSRPSR-PLGSL 461 (514)
Q Consensus 388 ~~~~~~~~~~~~~v~~~~~s-~~~~-~l~s~~~dg~i~i--wd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l-~s~s~ 461 (514)
.. ....|. +++. +|.....||--+| ++...+ ....+....-.|.. +.+.++++.| .++..
T Consensus 236 ---------~~---~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~--~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~ 301 (353)
T PF00930_consen 236 ---------VY---DPPHFLGPDGNEFLWISERDGYRHLYLYDLDGG--KPRQLTSGDWEVTSILGWDEDNNRIYFTANG 301 (353)
T ss_dssp ---------SS---SEEEE-TTTSSEEEEEEETTSSEEEEEEETTSS--EEEESS-SSS-EEEEEEEECTSSEEEEEESS
T ss_pred ---------ee---cccccccCCCCEEEEEEEcCCCcEEEEEccccc--ceeccccCceeecccceEcCCCCEEEEEecC
Confidence 00 145554 5555 4555557775444 455544 23344444455644 5667776644 34433
Q ss_pred ----CCeEEEeeCC---CCCccccCCcccccccce-EEEEEcCCCCEEEEE
Q 010256 462 ----SGVVRRVKGA---DNSALDANGNAFDFSMKL-LHLAWHPSENSIACA 504 (514)
Q Consensus 462 ----d~~v~i~~~~---~~~~~~~~~~~~~~~~~v-~~~~~spd~~~l~~~ 504 (514)
...+..+... .+. .+...... ..+.|||++++++..
T Consensus 302 ~~p~~r~lY~v~~~~~~~~~-------~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 302 DNPGERHLYRVSLDSGGEPK-------CLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp GGTTSBEEEEEETTETTEEE-------ESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred CCCCceEEEEEEeCCCCCeE-------eccCCCCCceEEEECCCCCEEEEE
Confidence 2344332222 111 11122222 699999999998844
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00064 Score=64.77 Aligned_cols=169 Identities=14% Similarity=0.160 Sum_probs=105.1
Q ss_pred ccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccc
Q 010256 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (514)
.|...|.--+++..+++++.|+.-|.+++|+..+++.. .....+-.
T Consensus 31 ~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~----------------------~~~~~~~~------------ 76 (726)
T KOG3621|consen 31 FFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR----------------------KLKNEGAT------------ 76 (726)
T ss_pred cCcceEEEEEeecCCceEEEecccceEEEEecCchhhh----------------------cccccCcc------------
Confidence 45667777777888999999999999999998776532 11111111
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
..+..+.. +.+..++|.|+..|.|.++-+..+.......
T Consensus 77 ~~~~~~~v--s~~e~lvAagt~~g~V~v~ql~~~~p~~~~~--------------------------------------- 115 (726)
T KOG3621|consen 77 GITCVRSV--SSVEYLVAAGTASGRVSVFQLNKELPRDLDY--------------------------------------- 115 (726)
T ss_pred ceEEEEEe--cchhHhhhhhcCCceEEeehhhccCCCccee---------------------------------------
Confidence 33444444 4555677788889999998776532100000
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
+ .. .-..|...|++++|++++..+.+| ..|+|.+-.+... ..+.
T Consensus 116 ------~--------------t~------------~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~-~~~~-- 160 (726)
T KOG3621|consen 116 ------V--------------TP------------CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSR-QAFL-- 160 (726)
T ss_pred ------e--------------cc------------ccccCCceEEEEEecccccEEeecCCCceEEEEEechh-hhhc--
Confidence 0 00 013478899999999999999999 8999999888752 1111
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCc
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA 316 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~ 316 (514)
.+.+.+....+.|..+.+... .+|++... .-.+++++.+.
T Consensus 161 -~~~q~il~~ds~IVQlD~~q~--~LLVStl~--r~~Lc~tE~et 200 (726)
T KOG3621|consen 161 -SKSQEILSEDSEIVQLDYLQS--YLLVSTLT--RCILCQTEAET 200 (726)
T ss_pred -cccceeeccCcceEEeecccc--eehHhhhh--hhheeecchhH
Confidence 111233345677777777643 34443332 22455655443
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00045 Score=61.17 Aligned_cols=39 Identities=15% Similarity=0.223 Sum_probs=31.4
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEe
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVF 152 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~ 152 (514)
..|..++|+|...| ++..++.+++|+|.|+++.......
T Consensus 194 ~~IrdlafSp~~~G-Ll~~asl~nkiki~dlet~~~vssy 232 (463)
T KOG1645|consen 194 SFIRDLAFSPFNEG-LLGLASLGNKIKIMDLETSCVVSSY 232 (463)
T ss_pred hhhhhhccCccccc-eeeeeccCceEEEEecccceeeehe
Confidence 67999999876654 7888999999999999987654433
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0019 Score=61.32 Aligned_cols=136 Identities=10% Similarity=0.013 Sum_probs=77.6
Q ss_pred CCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccc
Q 010256 245 GETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL 324 (514)
Q Consensus 245 ~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 324 (514)
+..++.+.++.+..+|..+++...+. .+. ....+.. .+ ..++.++.+|.+..+|..+++..++...
T Consensus 257 ~~vy~~~~~g~l~ald~~tG~~~W~~------~~~----~~~~~~~--~~-~~vy~~~~~g~l~ald~~tG~~~W~~~~- 322 (394)
T PRK11138 257 GVVYALAYNGNLVALDLRSGQIVWKR------EYG----SVNDFAV--DG-GRIYLVDQNDRVYALDTRGGVELWSQSD- 322 (394)
T ss_pred CEEEEEEcCCeEEEEECCCCCEEEee------cCC----CccCcEE--EC-CEEEEEcCCCeEEEEECCCCcEEEcccc-
Confidence 43444448899999999877654432 111 1112222 33 4677788899999999999876543111
Q ss_pred eeccCCCCccceeeccccceeEEEEecCCCEEEEE-eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceee
Q 010256 325 FEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFE 403 (514)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 403 (514)
... ....+.... ++ .|+.+ .+|.|.+.|..+ ++.+........... .+
T Consensus 323 ~~~--------------~~~~sp~v~-~g-~l~v~~~~G~l~~ld~~t-G~~~~~~~~~~~~~~--------------s~ 371 (394)
T PRK11138 323 LLH--------------RLLTAPVLY-NG-YLVVGDSEGYLHWINRED-GRFVAQQKVDSSGFL--------------SE 371 (394)
T ss_pred cCC--------------CcccCCEEE-CC-EEEEEeCCCEEEEEECCC-CCEEEEEEcCCCcce--------------eC
Confidence 000 011112221 34 45555 459999999987 777766544321100 01
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEec
Q 010256 404 CCLSGDGGRVATGSYSNLFRVFGC 427 (514)
Q Consensus 404 ~~~s~~~~~l~s~~~dg~i~iwd~ 427 (514)
..+ .+..|+.++.||.|+.++.
T Consensus 372 P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 372 PVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CEE--ECCEEEEEeCCceEEEEeC
Confidence 222 2446778899999988764
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.2e-06 Score=81.43 Aligned_cols=193 Identities=13% Similarity=0.151 Sum_probs=123.4
Q ss_pred ccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC-CCCEEEEe-c----CCeEEEEeccCCCceeeee
Q 010256 198 SFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-D----DLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 198 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~----d~~i~iwd~~~~~~~~~~~ 271 (514)
++.|..+|.|.+-. ...... ....+..++....++++|++ |.+.||+| + |..+.|||+.+.-....
T Consensus 73 lavG~atG~I~l~s-~r~~hd-----Ss~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPk-- 144 (783)
T KOG1008|consen 73 LAVGSATGNISLLS-VRHPHD-----SSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPK-- 144 (783)
T ss_pred hhhccccCceEEee-cCCccc-----ccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCc--
Confidence 37888889888755 222221 12233467788899999988 56788887 3 78899999985521100
Q ss_pred ccCCCcccc-cCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEe
Q 010256 272 DVKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (514)
Q Consensus 272 ~~~~~~~~~-~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 350 (514)
....+.+ ......+++|..+. +++.+|...+.++++|+|..... ...+. +..+..+..+
T Consensus 145 --e~~~fs~~~l~gqns~cwlrd~-klvlaGm~sr~~~ifdlRqs~~~---~~svn--------------Tk~vqG~tVd 204 (783)
T KOG1008|consen 145 --ESPLFSSSTLDGQNSVCWLRDT-KLVLAGMTSRSVHIFDLRQSLDS---VSSVN--------------TKYVQGITVD 204 (783)
T ss_pred --cccccccccccCccccccccCc-chhhcccccchhhhhhhhhhhhh---hhhhh--------------hhhcccceec
Confidence 0011222 33445588898777 88899999999999999854321 11111 1256778888
Q ss_pred c-CCCEEEEEeCCeEEEEE-ccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCC-EEEEEe-CCCcEEEEe
Q 010256 351 R-NGRHILSRDYMTLKLWD-INMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGS-YSNLFRVFG 426 (514)
Q Consensus 351 ~-~g~~l~~~~~~~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~-~dg~i~iwd 426 (514)
| .+.++++-.++.|.+|| ...-..++..+...+...+ + .++.++|.|... ++++.. ..+.|+++|
T Consensus 205 p~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~--------~---~l~~~aycPtrtglla~l~RdS~tIrlyd 273 (783)
T KOG1008|consen 205 PFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKP--------K---QLFALAYCPTRTGLLAVLSRDSITIRLYD 273 (783)
T ss_pred CCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcc--------c---ceeeEEeccCCcchhhhhccCcceEEEec
Confidence 8 78899988899999999 4433444444433332111 1 244899998643 344444 557899999
Q ss_pred cCC
Q 010256 427 CSE 429 (514)
Q Consensus 427 ~~~ 429 (514)
+..
T Consensus 274 i~~ 276 (783)
T KOG1008|consen 274 ICV 276 (783)
T ss_pred ccc
Confidence 853
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0049 Score=53.22 Aligned_cols=128 Identities=10% Similarity=0.147 Sum_probs=64.1
Q ss_pred CccCeEEEEECCCCCEEEEe-cCCeEEEEeccC--CCceeeeeccCC-CcccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010256 232 HDYHINSISNNSDGETFISA-DDLRINLWNLEI--SNQSFNIVDVKP-ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 307 (514)
Q Consensus 232 h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~--~~~~~~~~~~~~-~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i 307 (514)
+...+-.++|++.++.|+.+ ...-..+|.+.. ............ .........+.++.++|..+++++....+..|
T Consensus 116 ~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l 195 (248)
T PF06977_consen 116 GNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLL 195 (248)
T ss_dssp -SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEE
T ss_pred CCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeE
Confidence 44567889999998888888 666666666653 111111111000 00112334578999999876888888889999
Q ss_pred EEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEE
Q 010256 308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLW 367 (514)
Q Consensus 308 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iw 367 (514)
..+| .+|+.. ..+...... .-+.......-.|+|.++|.+.+++.-+..++|
T Consensus 196 ~~~d-~~G~~~----~~~~L~~g~---~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 196 LELD-RQGRVV----SSLSLDRGF---HGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp EEE--TT--EE----EEEE-STTG---GG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred EEEC-CCCCEE----EEEEeCCcc---cCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 9999 455542 112111100 000001124678999999988877755655554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00016 Score=70.12 Aligned_cols=110 Identities=12% Similarity=0.239 Sum_probs=76.8
Q ss_pred eEEEEeeCCCCcEEEEee----CCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 116 NKIRWCQSANSALYLLST----NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 116 ~~i~~~~~~~~~~l~s~~----~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
+-+.|+|+.+ ++++++ ..|.|.||- ++|++......+. +..+++|.|..-.+
T Consensus 19 ti~SWHPseP--lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~----------------hatSLCWHpe~~vL----- 74 (1416)
T KOG3617|consen 19 TISSWHPSEP--LFAVASFSPERGGSVTIFA-DTGEPQRDVTYPV----------------HATSLCWHPEEFVL----- 74 (1416)
T ss_pred cccccCCCCc--eeEEEEecCCCCceEEEEe-cCCCCCcccccce----------------ehhhhccChHHHHH-----
Confidence 3456877665 777764 457888873 3444322222221 22378999998887
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCC
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS 264 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~ 264 (514)
+.|-+-|.+.+|. ....+. .+....|..+|..+.|+++|..++++ .-|.+.+|.....
T Consensus 75 -------a~gwe~g~~~v~~-~~~~e~-------htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~ 133 (1416)
T KOG3617|consen 75 -------AQGWEMGVSDVQK-TNTTET-------HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVI 133 (1416)
T ss_pred -------hhccccceeEEEe-cCCcee-------eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeec
Confidence 8999999999888 222222 12236789999999999999999999 8999999987633
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.08 E-value=5.9e-05 Score=70.37 Aligned_cols=83 Identities=14% Similarity=0.266 Sum_probs=65.3
Q ss_pred cCcccccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccc
Q 010256 26 RTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDY 105 (514)
Q Consensus 26 ~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 105 (514)
+.....++....|.|++++|+.+.|+.|+.||+|.+||...+.. .+....
T Consensus 250 rvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t-------------------------~~~ka~----- 299 (545)
T PF11768_consen 250 RVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT-------------------------LLAKAE----- 299 (545)
T ss_pred EEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee-------------------------eeeeec-----
Confidence 34445678899999999999999999999999999999765432 111111
Q ss_pred ccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccE
Q 010256 106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK 147 (514)
Q Consensus 106 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~ 147 (514)
-..+.++|+ ++|..+++|+..|.+.+||+.-..
T Consensus 300 -------~~P~~iaWH--p~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 300 -------FIPTLIAWH--PDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred -------ccceEEEEc--CCCcEEEEEcCCceEEEEEeecCc
Confidence 347889994 577799999999999999987554
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00012 Score=68.70 Aligned_cols=185 Identities=16% Similarity=0.172 Sum_probs=109.2
Q ss_pred ccCeEEEEECCCCCEEEEe--c--C-CeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCe-
Q 010256 233 DYHINSISNNSDGETFISA--D--D-LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS- 306 (514)
Q Consensus 233 ~~~v~~~~~~~~~~~l~s~--~--d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~- 306 (514)
...+..-+|+|+++.++.. . . ..+.++++++++..... ++ ...-...+|+|||..++++...||.
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~------~~---~g~~~~P~fspDG~~l~f~~~rdg~~ 262 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL------NF---NGNNGAPAFSPDGSKLAFSSSRDGSP 262 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee------cc---CCccCCccCCCCCCEEEEEECCCCCc
Confidence 3456677899999887754 2 2 35999999876654322 22 2333456899999666677777876
Q ss_pred -EEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC--CeEEEEEccCCCCceeeeeecc
Q 010256 307 -IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHE 383 (514)
Q Consensus 307 -i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~~~~~~~~~~~~~ 383 (514)
|.++|+.++... + +.. -.+.-..-.|+|||+.++-.+| |.-.||-+..++.....+....
T Consensus 263 ~iy~~dl~~~~~~----~-Lt~------------~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~ 325 (425)
T COG0823 263 DIYLMDLDGKNLP----R-LTN------------GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSG 325 (425)
T ss_pred cEEEEcCCCCcce----e-ccc------------CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccC
Confidence 455566655421 1 111 1122235679999999998655 5555555544455555554433
Q ss_pred ccccccccccccCCccceeeEEEcCCCCEEEEEeC-CCc--EEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecC
Q 010256 384 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SNL--FRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGS 460 (514)
Q Consensus 384 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s 460 (514)
.... .-.|+|||++|+..+. +|. |.+.|+.++... ..+ .+........+.++++.+...+
T Consensus 326 ~~~~---------------~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~-~~l-t~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 326 GGNS---------------NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKI-RIL-TSTYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred CCCc---------------CccCCCCCCEEEEEeccCCceeeEEeccCCCCcE-EEc-cccccCCCCCcCCCCceEEEec
Confidence 3211 4679999999987664 344 667777665421 111 1222233445667776665544
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0018 Score=56.69 Aligned_cols=144 Identities=13% Similarity=0.120 Sum_probs=83.6
Q ss_pred cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCC
Q 010256 252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (514)
Q Consensus 252 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 331 (514)
++|+|..||.++++...+. .+............. ++ ..+++++.++.+..||..+|+..++ ++...
T Consensus 1 ~~g~l~~~d~~tG~~~W~~------~~~~~~~~~~~~~~~-~~-~~v~~~~~~~~l~~~d~~tG~~~W~----~~~~~-- 66 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSY------DLGPGIGGPVATAVP-DG-GRVYVASGDGNLYALDAKTGKVLWR----FDLPG-- 66 (238)
T ss_dssp -TSEEEEEETTTTEEEEEE------ECSSSCSSEEETEEE-ET-TEEEEEETTSEEEEEETTTSEEEEE----EECSS--
T ss_pred CCCEEEEEECCCCCEEEEE------ECCCCCCCccceEEE-eC-CEEEEEcCCCEEEEEECCCCCEEEE----eeccc--
Confidence 4789999999877766543 121111222222232 34 4677778999999999999987533 22111
Q ss_pred CccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeee-eeccccccccccccccCCccceeeEEEcCCC
Q 010256 332 GTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATF-QVHEHLRPKLCDLYENDSIFDKFECCLSGDG 410 (514)
Q Consensus 332 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 410 (514)
.+.......++..++...++.+..+|..+ ++.+... ........ . ........++
T Consensus 67 -----------~~~~~~~~~~~~v~v~~~~~~l~~~d~~t-G~~~W~~~~~~~~~~~----------~--~~~~~~~~~~ 122 (238)
T PF13360_consen 67 -----------PISGAPVVDGGRVYVGTSDGSLYALDAKT-GKVLWSIYLTSSPPAG----------V--RSSSSPAVDG 122 (238)
T ss_dssp -----------CGGSGEEEETTEEEEEETTSEEEEEETTT-SCEEEEEEE-SSCTCS----------T--B--SEEEEET
T ss_pred -----------cccceeeecccccccccceeeeEecccCC-cceeeeeccccccccc----------c--ccccCceEec
Confidence 11111122344444445568999999887 8877763 33211100 0 0022233347
Q ss_pred CEEEEEeCCCcEEEEecCCCcee
Q 010256 411 GRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 411 ~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
..++.+..++.|..+|+++|+.+
T Consensus 123 ~~~~~~~~~g~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 123 DRLYVGTSSGKLVALDPKTGKLL 145 (238)
T ss_dssp TEEEEEETCSEEEEEETTTTEEE
T ss_pred CEEEEEeccCcEEEEecCCCcEE
Confidence 78888888999999999998543
|
... |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0012 Score=63.45 Aligned_cols=101 Identities=11% Similarity=0.105 Sum_probs=67.5
Q ss_pred ceeEEEEecCCCEEEEEeC--CeEEEEEccCCCCc------------eeeeeeccccccccccccccCCccceeeEEEcC
Q 010256 343 SISDIKFARNGRHILSRDY--MTLKLWDINMDSGP------------VATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 408 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (514)
....++++|||+++++++. .+|.|.|+.+ .+. ........++ ...+|++
T Consensus 322 sPHGV~vSPDGkylyVanklS~tVSVIDv~k-~k~~~~~~~~~~~~vvaevevGlGP----------------LHTaFDg 384 (635)
T PRK02888 322 NPHGVNTSPDGKYFIANGKLSPTVTVIDVRK-LDDLFDGKIKPRDAVVAEPELGLGP----------------LHTAFDG 384 (635)
T ss_pred CccceEECCCCCEEEEeCCCCCcEEEEEChh-hhhhhhccCCccceEEEeeccCCCc----------------ceEEECC
Confidence 5678999999999998653 8999999986 221 1111111111 1578999
Q ss_pred CCCEEEEEeCCCcEEEEecCC------Cc---eeeeeecCCCcceeEE-----EECCCCCceeecC
Q 010256 409 DGGRVATGSYSNLFRVFGCSE------GS---AESTTLEASKNPMRRQ-----VQTPSRPSRPLGS 460 (514)
Q Consensus 409 ~~~~l~s~~~dg~i~iwd~~~------~~---~~~~~~~~~~~~v~~~-----~~~~~~~~l~s~s 460 (514)
+|+.+.|---|..|-.|++.. |. .....+..|..+-.-. .-.|+|+||++..
T Consensus 385 ~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 385 RGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred CCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 999888888999999999875 11 2334444444443222 2378999998874
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00047 Score=61.04 Aligned_cols=79 Identities=9% Similarity=0.207 Sum_probs=62.6
Q ss_pred cccccceEEEEEcCCCC-eEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 32 VQEVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~-~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..|...|..++|||..+ +|..++.+..|+|.|+.+.-. ...+..|
T Consensus 190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~-----------------------vssy~a~----------- 235 (463)
T KOG1645|consen 190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV-----------------------VSSYIAY----------- 235 (463)
T ss_pred cccchhhhhhccCccccceeeeeccCceEEEEeccccee-----------------------eeheecc-----------
Confidence 36788999999999777 788899999999999986653 2334444
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccE
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK 147 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~ 147 (514)
..+.+.+|.-.. ..++++|-.+|.|.+||++..+
T Consensus 236 --~~~wSC~wDlde-~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 236 --NQIWSCCWDLDE-RHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred --CCceeeeeccCC-cceeEEeccCceEEEEEccCCC
Confidence 559999997433 5688889999999999998653
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0083 Score=55.81 Aligned_cols=95 Identities=12% Similarity=-0.002 Sum_probs=54.5
Q ss_pred eccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccc--eeeEEEcC-CCCEE
Q 010256 338 TEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFD--KFECCLSG-DGGRV 413 (514)
Q Consensus 338 ~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~s~-~~~~l 413 (514)
......+.++..+|++++.++.+. |+|.++|+.. +..++.+++.....-..........-.. .....-.+ ...+|
T Consensus 304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~-~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVAR-GIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCC-ChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 334456889999999998888766 9999999997 7777777765543110000000000000 00000000 01233
Q ss_pred -EEEeCCCcEEEEecCCCcee
Q 010256 414 -ATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 414 -~s~~~dg~i~iwd~~~~~~~ 433 (514)
+-+-.-|.|.||.++.+.+.
T Consensus 383 vIyaprRg~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGPRV 403 (415)
T ss_pred EEEeccCCeEEEEecCCCCEE
Confidence 34567799999999988443
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00016 Score=70.69 Aligned_cols=180 Identities=17% Similarity=0.156 Sum_probs=119.2
Q ss_pred cEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCC
Q 010256 296 NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSG 374 (514)
Q Consensus 296 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~ 374 (514)
..++.|+....+..+|+++.+.. +..+... +.+. -+..+++++.+|+. |+|.+-|.++ .+
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~----r~~~v~a------------~~v~--imR~Nnr~lf~G~t~G~V~LrD~~s-~~ 208 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKET----RTTNVSA------------SGVT--IMRYNNRNLFCGDTRGTVFLRDPNS-FE 208 (1118)
T ss_pred cceeecchhhheeeeecccceee----eeeeccC------------CceE--EEEecCcEEEeecccceEEeecCCc-Cc
Confidence 45677777778888999887652 2222111 1233 33456899999976 9999999998 99
Q ss_pred ceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCC---------CcEEEEecCCCceeeeeecCCCccee
Q 010256 375 PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---------NLFRVFGCSEGSAESTTLEASKNPMR 445 (514)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~v~ 445 (514)
.++++..|.+.+ .+|+-.|++|++++.. .-|+|||++..+.+ ..+.-+.++ .
T Consensus 209 ~iht~~aHs~si-----------------SDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral-~PI~~~~~P-~ 269 (1118)
T KOG1275|consen 209 TIHTFDAHSGSI-----------------SDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL-SPIQFPYGP-Q 269 (1118)
T ss_pred eeeeeeccccce-----------------eeeeccCCeEEEeecccccccccccchhhhhhhhhhhcc-CCcccccCc-h
Confidence 999999998763 4677789999998764 45789999876333 333333333 2
Q ss_pred EEEECCCC-CceeecCCCCeEEEeeCCCCCccccCCccc-ccccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 446 RQVQTPSR-PSRPLGSLSGVVRRVKGADNSALDANGNAF-DFSMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 446 ~~~~~~~~-~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~-~~~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
-+.|.|.- ..++.+|..|.+.+.+...+.......... .....+..+++|+++..||.+. ++.+-+|.
T Consensus 270 flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 270 FLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred hhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 34555653 356777788888884422222111111111 2345699999999999999887 66777774
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00045 Score=64.95 Aligned_cols=185 Identities=16% Similarity=0.157 Sum_probs=103.7
Q ss_pred CCceEEEEEecCCCcEEEEEe-c--C-CeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEE
Q 010256 282 TEVITSAEFHPTHCNMLAYSS-S--K-GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL 357 (514)
Q Consensus 282 ~~~i~~v~~~p~~~~~l~~~~-~--d-g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 357 (514)
...+..-+|+|++ ..++..+ . . ..+.++|+.+++... +..+. +.-...+|+|||+.|+
T Consensus 192 ~~~~~~p~ws~~~-~~~~y~~f~~~~~~~i~~~~l~~g~~~~--i~~~~---------------g~~~~P~fspDG~~l~ 253 (425)
T COG0823 192 GSLILTPAWSPDG-KKLAYVSFELGGCPRIYYLDLNTGKRPV--ILNFN---------------GNNGAPAFSPDGSKLA 253 (425)
T ss_pred CcceeccccCcCC-CceEEEEEecCCCceEEEEeccCCccce--eeccC---------------CccCCccCCCCCCEEE
Confidence 4556677899998 4444332 2 2 358889998876421 11111 2334568999999998
Q ss_pred EEe--C--CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe-CCCc--EEEEecCCC
Q 010256 358 SRD--Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNL--FRVFGCSEG 430 (514)
Q Consensus 358 ~~~--~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~--i~iwd~~~~ 430 (514)
-.. + -.|.++|+.. +.+..+....+... .-.|+|||++|+..+ ..|+ |.+++++.+
T Consensus 254 f~~~rdg~~~iy~~dl~~--~~~~~Lt~~~gi~~---------------~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~ 316 (425)
T COG0823 254 FSSSRDGSPDIYLMDLDG--KNLPRLTNGFGINT---------------SPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS 316 (425)
T ss_pred EEECCCCCccEEEEcCCC--CcceecccCCcccc---------------CccCCCCCCEEEEEeCCCCCcceEEECCCCC
Confidence 743 3 4566677764 33333433322211 467999999988665 3444 666677655
Q ss_pred ceeeeeecCCCcceeEEEECCCCCceeecCCC-CeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEe
Q 010256 431 SAESTTLEASKNPMRRQVQTPSRPSRPLGSLS-GVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 505 (514)
Q Consensus 431 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d-~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~ 505 (514)
.....+..+.... ...++|||++++..+.. |...+... .+..... ...+..........|.|+++.|...+
T Consensus 317 ~~~riT~~~~~~~--~p~~SpdG~~i~~~~~~~g~~~i~~~-~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 317 QVTRLTFSGGGNS--NPVWSPDGDKIVFESSSGGQWDIDKN-DLASGGK-IRILTSTYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred ceeEeeccCCCCc--CccCCCCCCEEEEEeccCCceeeEEe-ccCCCCc-EEEccccccCCCCCcCCCCceEEEec
Confidence 4433444433333 67889999999888743 33333000 0000000 01112234445667888888777444
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.004 Score=58.90 Aligned_cols=165 Identities=12% Similarity=0.085 Sum_probs=93.4
Q ss_pred ccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEE-E
Q 010256 233 DYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI-D 311 (514)
Q Consensus 233 ~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~w-d 311 (514)
......+.++|+|+.++.+.||.-.++.....+.. ..+.-...+|.+.+ .+|+-...+.|.++ +
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k-------------~~G~g~~~vw~~~n--~yAv~~~~~~I~I~kn 96 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNK-------------AFGSGLSFVWSSRN--RYAVLESSSTIKIYKN 96 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEE-------------EEEE-SEEEE-TSS--EEEEE-TTS-EEEEET
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccc-------------ccCceeEEEEecCc--cEEEEECCCeEEEEEc
Confidence 34578899999999999999999999984322211 13445678899954 67777778899996 3
Q ss_pred cCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeecccccccccc
Q 010256 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCD 391 (514)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 391 (514)
+.. .. .+.+... ..+..+-. |.+|...+++.|.+||+.+ ++.+..+....
T Consensus 97 ~~~-~~----~k~i~~~-------------~~~~~If~---G~LL~~~~~~~i~~yDw~~-~~~i~~i~v~~-------- 146 (443)
T PF04053_consen 97 FKN-EV----VKSIKLP-------------FSVEKIFG---GNLLGVKSSDFICFYDWET-GKLIRRIDVSA-------- 146 (443)
T ss_dssp TEE--T----T-----S-------------S-EEEEE----SSSEEEEETTEEEEE-TTT---EEEEESS-E--------
T ss_pred Ccc-cc----ceEEcCC-------------cccceEEc---CcEEEEECCCCEEEEEhhH-cceeeEEecCC--------
Confidence 322 11 1122211 11222222 8888888777899999997 88888876443
Q ss_pred ccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC---------ce-eeeeecCCCcceeEEEECCC
Q 010256 392 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG---------SA-ESTTLEASKNPMRRQVQTPS 452 (514)
Q Consensus 392 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---------~~-~~~~~~~~~~~v~~~~~~~~ 452 (514)
|..+.|+++|++++..+.+ .++|++.... -. ....+..-...|.+.+|..+
T Consensus 147 ---------vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d 207 (443)
T PF04053_consen 147 ---------VKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED 207 (443)
T ss_dssp ----------EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT
T ss_pred ---------CcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC
Confidence 2279999999999988765 6777775422 00 12333333567778888666
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0024 Score=62.43 Aligned_cols=202 Identities=9% Similarity=0.046 Sum_probs=114.3
Q ss_pred eeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccC-eEEEEECCCCCEEEE-e-cCC
Q 010256 178 SYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYH-INSISNNSDGETFIS-A-DDL 254 (514)
Q Consensus 178 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~s-~-~d~ 254 (514)
+|++.+..+ +.|+.+|.|.+.+ ... +..+. ...+... |..+-...+..+|++ | +++
T Consensus 30 c~~s~~~~v------------vigt~~G~V~~Ln----~s~----~~~~~-fqa~~~siv~~L~~~~~~~~L~sv~Ed~~ 88 (933)
T KOG2114|consen 30 CCSSSTGSV------------VIGTADGRVVILN----SSF----QLIRG-FQAYEQSIVQFLYILNKQNFLFSVGEDEQ 88 (933)
T ss_pred EEcCCCceE------------EEeeccccEEEec----ccc----eeeeh-heecchhhhhHhhcccCceEEEEEeecCC
Confidence 566666666 8899999988766 110 01011 1344444 444433344456666 4 444
Q ss_pred ----eEEEEeccCCC-----ceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccce
Q 010256 255 ----RINLWNLEISN-----QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF 325 (514)
Q Consensus 255 ----~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 325 (514)
.+++|+++..+ ++.....+-+........++.+++.+.+- +.+|+|-.+|.|..+.=.-.. ++..+.-
T Consensus 89 ~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~R--Drgsr~~ 165 (933)
T KOG2114|consen 89 GNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILR--DRGSRQD 165 (933)
T ss_pred CCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchh--cccccee
Confidence 69999997542 12211111111222346778899999987 899999999999887422111 0001110
Q ss_pred eccCCCCccceeeccccceeEEEEecCCCE-EEEEeCCeEEEEEccCCCCceee-eeeccccccccccccccCCccceee
Q 010256 326 EEQEAPGTRSFFTEIIASISDIKFARNGRH-ILSRDYMTLKLWDINMDSGPVAT-FQVHEHLRPKLCDLYENDSIFDKFE 403 (514)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-l~~~~~~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~ 403 (514)
- ...-..+|+.+++..+++. +.++.-..|.+|.+.. ..+... +..+... ..+
T Consensus 166 ~----------~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~g-r~p~~~~ld~~G~~---------------lnC 219 (933)
T KOG2114|consen 166 Y----------SHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSG-RTPSLKVLDNNGIS---------------LNC 219 (933)
T ss_pred e----------eccCCCCceeeEEecCCceeEEEEecceeEEEEecC-CCcceeeeccCCcc---------------cee
Confidence 0 1112368999999998887 4445556899999984 333332 3333322 226
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 404 CCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 404 ~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
..+++....+++++. ..+.+|+....
T Consensus 220 ss~~~~t~qfIca~~-e~l~fY~sd~~ 245 (933)
T KOG2114|consen 220 SSFSDGTYQFICAGS-EFLYFYDSDGR 245 (933)
T ss_pred eecCCCCccEEEecC-ceEEEEcCCCc
Confidence 677765553444433 47999998743
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00027 Score=68.55 Aligned_cols=107 Identities=15% Similarity=0.221 Sum_probs=79.3
Q ss_pred EEEECCCCCEEEEe-----cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEc
Q 010256 238 SISNNSDGETFISA-----DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (514)
Q Consensus 238 ~~~~~~~~~~l~s~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~ 312 (514)
-.+|+|...+++.+ ..|.|.||- +++++... ....-.+++++|+|.. -.|+.|-.-|.+.+|..
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~---------Vt~P~hatSLCWHpe~-~vLa~gwe~g~~~v~~~ 88 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRD---------VTYPVHATSLCWHPEE-FVLAQGWEMGVSDVQKT 88 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcc---------cccceehhhhccChHH-HHHhhccccceeEEEec
Confidence 35699998888875 378898884 33443221 1123345789999987 78889999999999997
Q ss_pred CCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccC
Q 010256 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM 371 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~ 371 (514)
.+.+. .+ ....|..+|..+.||++|..+++++. |.|.+|....
T Consensus 89 ~~~e~-----ht-----------v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 89 NTTET-----HT-----------VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred CCcee-----ee-----------eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 66442 11 12346689999999999999999988 9999998763
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.7e-05 Score=72.83 Aligned_cols=210 Identities=12% Similarity=0.100 Sum_probs=120.5
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCC-CccccccC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG-GCGERNFG 191 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~l~~~~~ 191 (514)
..+.|+++....+..++++|..+|.|-+-.++...-.... .+-.....|.+++|.+-. +.|
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E-------------~tp~~ar~Ct~lAwneLDtn~L----- 118 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAE-------------VTPGYARPCTSLAWNELDTNHL----- 118 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccce-------------ecccccccccccccccccHHHH-----
Confidence 4477777765555567888999999999887764322000 000111234467777643 333
Q ss_pred CCCCCcccCCC----CCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCc
Q 010256 192 CASNDSSFPPG----GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 266 (514)
Q Consensus 192 ~~~~~~~~~~~----~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~ 266 (514)
+.|- .+..+.|||+..... .+. ....+..+--....+++|..+.+++.+| ....+.++|++....
T Consensus 119 -------Aagldkhrnds~~~Iwdi~s~lt-vPk--e~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~ 188 (783)
T KOG1008|consen 119 -------AAGLDKHRNDSSLKIWDINSLLT-VPK--ESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD 188 (783)
T ss_pred -------HhhhhhhcccCCccceecccccC-CCc--cccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh
Confidence 4432 457899999422211 111 1111112233455689999899999999 888999999983321
Q ss_pred eeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEE-cCCCccccccccceeccCCCCccceeecccccee
Q 010256 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID-MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (514)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 345 (514)
.... -....+..+...|-.++++++-. ||.|-+|| .++-+.. +......+.+.+ ..+.
T Consensus 189 ~~~s---------vnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienp---l~~i~~~~N~~~--------~~l~ 247 (783)
T KOG1008|consen 189 SVSS---------VNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENP---LQIILRNENKKP--------KQLF 247 (783)
T ss_pred hhhh---------hhhhhcccceecCCCCCceeccc-cCceeeccchhhhccH---HHHHhhCCCCcc--------ccee
Confidence 1111 12335667778884446776554 99999999 4432211 222211111100 2488
Q ss_pred EEEEecCCC--EEEEEeC-CeEEEEEccC
Q 010256 346 DIKFARNGR--HILSRDY-MTLKLWDINM 371 (514)
Q Consensus 346 ~~~~s~~g~--~l~~~~~-~~i~iwd~~~ 371 (514)
.++|+|... ..+...+ ++|+++|+..
T Consensus 248 ~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 248 ALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred eEEeccCCcchhhhhccCcceEEEecccc
Confidence 899999533 3333344 9999999874
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.012 Score=57.07 Aligned_cols=64 Identities=11% Similarity=-0.043 Sum_probs=44.9
Q ss_pred eEEEcCCCCEEEEEe-CCCcEEEEecCCCce-----------eeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 403 ECCLSGDGGRVATGS-YSNLFRVFGCSEGSA-----------ESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 403 ~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.+.++|||+++++++ .++.|.|.|+.+.+. .....+--.. ....+|.++|+...|...|..|-.
T Consensus 325 GV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~k 400 (635)
T PRK02888 325 GVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVK 400 (635)
T ss_pred ceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEE
Confidence 789999999977554 689999999987532 1122222222 236688888888888887877666
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0069 Score=56.55 Aligned_cols=209 Identities=11% Similarity=0.046 Sum_probs=104.4
Q ss_pred ccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCC-cccccCCceEEEEEec-----CC--CcEEEE
Q 010256 230 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA-NMEDLTEVITSAEFHP-----TH--CNMLAY 300 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~i~~v~~~p-----~~--~~~l~~ 300 (514)
....++|++++.+.-| +++.| .+|.+.+.|++.....+.. .+... ........++++.|.. |+ .-.+++
T Consensus 83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~-~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNE-NIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEE-EGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeec-cccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 4557999999998555 88888 8999999999855443331 11110 1112356788888862 11 146788
Q ss_pred EecCCeEEEEEcCC-CccccccccceeccCCCCccceeeccccceeEEE-EecC---------------------CCEEE
Q 010256 301 SSSKGSIRLIDMRQ-SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK-FARN---------------------GRHIL 357 (514)
Q Consensus 301 ~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~s~~---------------------g~~l~ 357 (514)
|+..|.+.+|.+.- ..- .....+... ...+.++|..+. |+.+ ..+++
T Consensus 161 GTn~G~v~~fkIlp~~~g--~f~v~~~~~--------~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV 230 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNG--RFSVQFAGA--------TTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVV 230 (395)
T ss_dssp EETTSEEEEEEEEE-GGG---EEEEEEEE--------E--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEE
T ss_pred EeCCCCEEEEEEecCCCC--ceEEEEeec--------cccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE
Confidence 99999999998752 110 000011110 011223333333 2111 12566
Q ss_pred EEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEE-----cCCCCEEEEEeCCCcEEEEecCCCce
Q 010256 358 SRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL-----SGDGGRVATGSYSNLFRVFGCSEGSA 432 (514)
Q Consensus 358 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----s~~~~~l~s~~~dg~i~iwd~~~~~~ 432 (514)
+.++..++++...+ .+..+......... ..+++ ...+..|++-..+|.+++|.+..-+.
T Consensus 231 vvSe~~irv~~~~~-~k~~~K~~~~~~~~---------------~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke 294 (395)
T PF08596_consen 231 VVSESDIRVFKPPK-SKGAHKSFDDPFLC---------------SSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE 294 (395)
T ss_dssp EE-SSEEEEE-TT----EEEEE-SS-EEE---------------EEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E
T ss_pred EEcccceEEEeCCC-Ccccceeecccccc---------------ceEEEEeecccCCceEEEEEECCCcEEEEECCCchH
Confidence 67778999998876 54443332111110 12333 23566788888999999999987644
Q ss_pred eeeeecC----CCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 433 ESTTLEA----SKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 433 ~~~~~~~----~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+ ..+.- +........++++|..++-.+..-..++
T Consensus 295 i-~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gpsE~~l~ 332 (395)
T PF08596_consen 295 I-KSVSLPPPLDSRRLSSSSISRNGDIFYWTGPSEIQLF 332 (395)
T ss_dssp E-EEEE-SS---HHHHTT-EE-TTS-EEEE-SSSEEEEE
T ss_pred h-hcccCCCccccccccccEECCCCCEEEEeCcccEEEE
Confidence 3 23332 2234556777888887766665544444
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.4e-05 Score=75.96 Aligned_cols=145 Identities=18% Similarity=0.200 Sum_probs=107.7
Q ss_pred cccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEE
Q 010256 277 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI 356 (514)
Q Consensus 277 ~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 356 (514)
++..+....++++|+-+. +.|+.|+..|.|++|+..+|... .. ...|.++|+.+.-+.+|..+
T Consensus 1096 ~frd~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~sG~~e----~s------------~ncH~SavT~vePs~dgs~~ 1158 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSSGSME----ES------------VNCHQSAVTLVEPSVDGSTQ 1158 (1516)
T ss_pred hhhccccceeeEEeecCC-ceEEeeeccceEEEEEccCcccc----cc------------ccccccccccccccCCccee
Confidence 566778889999999988 89999999999999999998752 12 34566899999999999988
Q ss_pred EEEeC---CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCcee
Q 010256 357 LSRDY---MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 357 ~~~~~---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
++.+. --..+|++...+.+.+++.... ++.|+..-..-+.|.......+||++++..+
T Consensus 1159 Ltsss~S~PlsaLW~~~s~~~~~Hsf~ed~-------------------~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l 1219 (1516)
T KOG1832|consen 1159 LTSSSSSSPLSALWDASSTGGPRHSFDEDK-------------------AVKFSNSLQFRALGTEADDALLYDVQTCSPL 1219 (1516)
T ss_pred eeeccccCchHHHhccccccCccccccccc-------------------eeehhhhHHHHHhcccccceEEEecccCcHH
Confidence 87532 3578999987667777776543 6778766555455555567899999998665
Q ss_pred eeeecC---CCcceeEEEECCCCCcee
Q 010256 434 STTLEA---SKNPMRRQVQTPSRPSRP 457 (514)
Q Consensus 434 ~~~~~~---~~~~v~~~~~~~~~~~l~ 457 (514)
...+.+ ....-+...|+|+..+++
T Consensus 1220 ~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1220 QTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred HHhcCcchhhhhhccccccCCCcceEe
Confidence 433432 233346678888877664
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00045 Score=67.68 Aligned_cols=177 Identities=16% Similarity=0.168 Sum_probs=117.5
Q ss_pred CCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccccc
Q 010256 245 GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK 323 (514)
Q Consensus 245 ~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 323 (514)
+..++.| -...+..+|+++.+... .. .. ....+.-++. ++ +.+.+|...|+|.+-|.++.+. ++
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r-~~-----~v--~a~~v~imR~--Nn-r~lf~G~t~G~V~LrD~~s~~~----ih 211 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETR-TT-----NV--SASGVTIMRY--NN-RNLFCGDTRGTVFLRDPNSFET----IH 211 (1118)
T ss_pred Ccceeecchhhheeeeecccceeee-ee-----ec--cCCceEEEEe--cC-cEEEeecccceEEeecCCcCce----ee
Confidence 3344444 55567778888554332 11 11 1223554544 44 7899999999999999988765 33
Q ss_pred ceeccCCCCccceeeccccceeEEEEecCCCEEEEEe----------CCeEEEEEccCCCCceeeeeecccccccccccc
Q 010256 324 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----------YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLY 393 (514)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~----------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (514)
+ +..|.+.|.++.. .|..|++++ |.-|+|||+++ .+.+..+..+.++.
T Consensus 212 t------------~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRm-mral~PI~~~~~P~------- 269 (1118)
T KOG1275|consen 212 T------------FDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRM-MRALSPIQFPYGPQ------- 269 (1118)
T ss_pred e------------eeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhh-hhccCCcccccCch-------
Confidence 3 4556678876655 488888753 23578999998 66666665555431
Q ss_pred ccCCccceeeEEEcCC-CCEEEEEeCCCcEEEEecCCCcee-e--eeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 394 ENDSIFDKFECCLSGD-GGRVATGSYSNLFRVFGCSEGSAE-S--TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 394 ~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~-~--~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
-+.|.|. ...++.++..|...+-|..+-... . ..+....+.+.++.+++++..+|.|..+|.|.+
T Consensus 270 ---------flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~ 338 (1118)
T KOG1275|consen 270 ---------FLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNL 338 (1118)
T ss_pred ---------hhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEee
Confidence 3566664 345777888899999984332221 1 233334455889999999999999999999999
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.019 Score=49.65 Aligned_cols=177 Identities=16% Similarity=0.179 Sum_probs=82.9
Q ss_pred cCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeec---cCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEE
Q 010256 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD---VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 309 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~ 309 (514)
+..-+|++..++.++++. .++.+.++++.........-. +.......++..+-.++|+|.+ +.|+.+-...-..+
T Consensus 65 ~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~-~~L~v~kE~~P~~l 143 (248)
T PF06977_consen 65 GDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKT-NRLFVAKERKPKRL 143 (248)
T ss_dssp SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTT-TEEEEEEESSSEEE
T ss_pred CCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCC-CEEEEEeCCCChhh
Confidence 345678887778777777 789999998854332211110 0000112345668999999988 56666677766777
Q ss_pred EEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEE-EEeC-CeEEEEEccCCCCceeeeeecccccc
Q 010256 310 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL-SRDY-MTLKLWDINMDSGPVATFQVHEHLRP 387 (514)
Q Consensus 310 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~-~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~ 387 (514)
|.++..... ............. .......+.+++++|....|+ .++. ..|..+|.. ++++..+....+...
T Consensus 144 ~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~--G~~~~~~~L~~g~~g 216 (248)
T PF06977_consen 144 YEVNGFPGG-FDLFVSDDQDLDD----DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ--GRVVSSLSLDRGFHG 216 (248)
T ss_dssp EEEESTT-S-S--EEEE-HHHH-----HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT----EEEEEE-STTGGG
T ss_pred EEEccccCc-cceeecccccccc----ccceeccccceEEcCCCCeEEEEECCCCeEEEECCC--CCEEEEEEeCCcccC
Confidence 777541100 0000000000000 011224578899999654444 4444 888889854 777776655442110
Q ss_pred ccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEE
Q 010256 388 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 425 (514)
Q Consensus 388 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 425 (514)
....+ ..--.++|.++|++.++ +.-+..++|
T Consensus 217 l~~~~------~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 217 LSKDI------PQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp -SS---------SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred ccccc------CCccEEEECCCCCEEEE-cCCceEEEe
Confidence 00000 01127999999986665 455666665
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.018 Score=54.50 Aligned_cols=179 Identities=16% Similarity=0.093 Sum_probs=89.1
Q ss_pred eEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCcc
Q 010256 255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 334 (514)
Q Consensus 255 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 334 (514)
.|.+|+.. ++....+ .+. .+.+.++.|+.+. .|++-..||.+++||+.... .+......
T Consensus 62 ~I~iys~s-G~ll~~i------~w~--~~~iv~~~wt~~e--~LvvV~~dG~v~vy~~~G~~-------~fsl~~~i--- 120 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSI------PWD--SGRIVGMGWTDDE--ELVVVQSDGTVRVYDLFGEF-------QFSLGEEI--- 120 (410)
T ss_pred EEEEECCC-CCEeEEE------EEC--CCCEEEEEECCCC--eEEEEEcCCEEEEEeCCCce-------eechhhhc---
Confidence 58888876 4443332 233 2789999999875 56667799999999986432 01100000
Q ss_pred ceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCce--eeeeeccccccccccccccCCccceeeEEEcCCCCE
Q 010256 335 SFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPV--ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR 412 (514)
Q Consensus 335 ~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 412 (514)
....-....+....+..+|-.+++++ +.+.+.+-- .++. ..+. .. ...............+ ..++.+...
T Consensus 121 ~~~~v~e~~i~~~~~~~~GivvLt~~-~~~~~v~n~--~~~~~~~~~~--~~-p~~~~~~~~~~~~~~i--~~l~~~~~~ 192 (410)
T PF04841_consen 121 EEEKVLECRIFAIWFYKNGIVVLTGN-NRFYVVNNI--DEPVKLRRLP--EI-PGLWTKFHWWPSWTVI--PLLSSDRVV 192 (410)
T ss_pred cccCcccccccccccCCCCEEEECCC-CeEEEEeCc--cccchhhccc--cC-CCcccccccccccccc--eEeecCcce
Confidence 00000112233334444564444433 333332211 1111 1111 00 0000000000000001 234555555
Q ss_pred EEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 413 VATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 413 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.+....++.+++.+...... +. ..+++..+++||+++++|.-..+|.+.+
T Consensus 193 ~i~~~~g~~i~~i~~~~~~~----i~-~~~~i~~iavSpng~~iAl~t~~g~l~v 242 (410)
T PF04841_consen 193 EILLANGETIYIIDENSFKQ----ID-SDGPIIKIAVSPNGKFIALFTDSGNLWV 242 (410)
T ss_pred EEEEecCCEEEEEEcccccc----cc-CCCCeEEEEECCCCCEEEEEECCCCEEE
Confidence 55555566666444332111 11 2457899999999999999999999888
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.041 Score=52.12 Aligned_cols=56 Identities=13% Similarity=0.066 Sum_probs=38.8
Q ss_pred eeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCC-CcceeEEEECCCCCcee
Q 010256 401 KFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS-KNPMRRQVQTPSRPSRP 457 (514)
Q Consensus 401 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~ 457 (514)
+..+++||+|++||.-..+|.+.+....-.+.. ..+... .....++.|..+.-.++
T Consensus 219 i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~-~e~~~~~~~~p~~~~WCG~dav~l 275 (410)
T PF04841_consen 219 IIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKL-CEFDTDSKSPPKQMAWCGNDAVVL 275 (410)
T ss_pred eEEEEECCCCCEEEEEECCCCEEEEECccccee-EEeecCcCCCCcEEEEECCCcEEE
Confidence 348999999999999999999999876544332 333332 44567888876644433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00019 Score=68.13 Aligned_cols=108 Identities=12% Similarity=0.123 Sum_probs=82.3
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE--eeCCCCCccccCCc
Q 010256 404 CCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR--VKGADNSALDANGN 481 (514)
Q Consensus 404 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i--~~~~~~~~~~~~~~ 481 (514)
-+++..+++|+.|+.-|.+++|+-..+..+..+..+....+.....+++..++|.|+..|.|.+ +.. ..........
T Consensus 39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~-~~p~~~~~~t 117 (726)
T KOG3621|consen 39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK-ELPRDLDYVT 117 (726)
T ss_pred EEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhc-cCCCcceeec
Confidence 4667789999999999999999998775555555556666777888999999999999999999 222 1111122222
Q ss_pred cc--ccccceEEEEEcCCCCEEEEEecCcEEEE
Q 010256 482 AF--DFSMKLLHLAWHPSENSIACAASNSLYMY 512 (514)
Q Consensus 482 ~~--~~~~~v~~~~~spd~~~l~~~~~~~~~i~ 512 (514)
.. .|...|++++|++|+..+.+|...|.+++
T Consensus 118 ~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~ 150 (726)
T KOG3621|consen 118 PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVL 150 (726)
T ss_pred cccccCCceEEEEEecccccEEeecCCCceEEE
Confidence 22 36889999999999999999998877664
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.012 Score=54.91 Aligned_cols=278 Identities=13% Similarity=0.208 Sum_probs=131.8
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccc
Q 010256 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (514)
...+....|||+|+.+|... ++.|.+++..++... .+...+. ... +.|- + +++-.-++-+.
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~-----~lT~dg~-------~~i---~nG~-~--dwvyeEEv~~~ 102 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET-----QLTTDGE-------PGI---YNGV-P--DWVYEEEVFDR 102 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE-----ESES--T-------TTE---EESB-----HHHHHHTSSS
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeE-----Eeccccc-------eeE---EcCc-c--ceecccccccc
Confidence 46789999999999999985 678999988766432 1111110 000 0110 1 12211121133
Q ss_pred eeEEEEeeCCCCcEEEEe-eCCCeEEEEEcCc---c-E---EEEEeeccCCCccccCCcceecccccCCceeeccCCCcc
Q 010256 115 INKIRWCQSANSALYLLS-TNDKTIKLWKVQE---K-K---VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (514)
Q Consensus 115 v~~i~~~~~~~~~~l~s~-~~d~~i~iw~~~~---~-~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 186 (514)
-..+-| ++|+++|+.. -.+..|+.+.+.. . . ........
T Consensus 103 ~~~~~W--Spd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YP------------------------------- 149 (353)
T PF00930_consen 103 RSAVWW--SPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYP------------------------------- 149 (353)
T ss_dssp SBSEEE---TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE---------------------------------
T ss_pred ccceEE--CCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccC-------------------------------
Confidence 466889 6677788876 4455555554321 1 1 11111111
Q ss_pred ccccCCCCCCcccCCCCCCcEEe--ceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe----c--CCeEEE
Q 010256 187 ERNFGCASNDSSFPPGGVSSLRL--PVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA----D--DLRINL 258 (514)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i--~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~----~--d~~i~i 258 (514)
..|.....+++ ++ +...+......+ .. ...-...+..+.|.++++.|+.. . ...+.+
T Consensus 150 ------------k~G~~np~v~l~v~~-~~~~~~~~~~~~-~~-~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~ 214 (353)
T PF00930_consen 150 ------------KAGDPNPRVSLFVVD-LASGKTTELDPP-NS-LNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVL 214 (353)
T ss_dssp ------------BTTS---EEEEEEEE-SSSTCCCEE----HH-HHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEE
T ss_pred ------------CCCCcCCceEEEEEE-CCCCcEEEeeec-cc-cCCCccCcccceecCCCcEEEEEEcccCCCEEEEEE
Confidence 33344444443 34 221111100000 00 12234567889999999844432 1 334566
Q ss_pred EeccCCCceeeeeccCCCcccccCCceEEEEEe-cCCCcEEEEEecCCeEEEE--EcCCCccccccccceeccCCCCccc
Q 010256 259 WNLEISNQSFNIVDVKPANMEDLTEVITSAEFH-PTHCNMLAYSSSKGSIRLI--DMRQSALCDTHSKLFEEQEAPGTRS 335 (514)
Q Consensus 259 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~-p~~~~~l~~~~~dg~i~~w--d~~~~~~~~~~~~~~~~~~~~~~~~ 335 (514)
.|..++.......... .+--..-....|. +++..++.....+|.-+|| +...+... .
T Consensus 215 ~d~~tg~~~~~~~e~~----~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-----~----------- 274 (353)
T PF00930_consen 215 CDASTGETRVVLEETS----DGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-----Q----------- 274 (353)
T ss_dssp EEECTTTCEEEEEEES----SSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-----E-----------
T ss_pred EECCCCceeEEEEecC----CcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-----c-----------
Confidence 6776544332221111 1111122345554 6765666666677765554 44444311 1
Q ss_pred eeeccccceeE-EEEecCCCEEEE-Ee--C-CeEEEEEccCC-CCceeeeeeccccccccccccccCCccceeeEEEcCC
Q 010256 336 FFTEIIASISD-IKFARNGRHILS-RD--Y-MTLKLWDINMD-SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (514)
Q Consensus 336 ~~~~~~~~i~~-~~~s~~g~~l~~-~~--~-~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 409 (514)
++...-.|.. +.++++++.|+- +. . ..-.||.+... +..+..+....... ..+.|||+
T Consensus 275 -lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~---------------~~~~~Spd 338 (353)
T PF00930_consen 275 -LTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDH---------------YSASFSPD 338 (353)
T ss_dssp -SS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTT---------------EEEEE-TT
T ss_pred -cccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCc---------------eEEEECCC
Confidence 1112234544 678888776653 43 2 55566666653 45555555443321 27999999
Q ss_pred CCEEEE
Q 010256 410 GGRVAT 415 (514)
Q Consensus 410 ~~~l~s 415 (514)
|++++-
T Consensus 339 g~y~v~ 344 (353)
T PF00930_consen 339 GKYYVD 344 (353)
T ss_dssp SSEEEE
T ss_pred CCEEEE
Confidence 998874
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.013 Score=59.03 Aligned_cols=144 Identities=15% Similarity=0.157 Sum_probs=87.5
Q ss_pred cEEEEE-ecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec------CCCEEEEEeCCeEEEEE
Q 010256 296 NMLAYS-SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR------NGRHILSRDYMTLKLWD 368 (514)
Q Consensus 296 ~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~------~g~~l~~~~~~~i~iwd 368 (514)
++|+.. .....++-.|+..|+. +..|+.+.. .+|..++-.. ..+.++.-++..+..||
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKV----V~eW~~~~~-----------~~v~~~~p~~K~aqlt~e~tflGls~n~lfriD 558 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKV----VEEWKVHDD-----------IPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRID 558 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcE----EEEeecCCC-----------cceeEecccccccccCCCceEEEECCCceEEec
Confidence 444433 3457888899999987 455665542 2233332211 12334444668999999
Q ss_pred ccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEE
Q 010256 369 INMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQV 448 (514)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 448 (514)
.+..+..+..-..+. |..+.- ..+++-+.+| +||.|+.+|.||+||- .+......+.+-..||..+.
T Consensus 559 pR~~~~k~v~~~~k~---------Y~~~~~--Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iD 625 (794)
T PF08553_consen 559 PRLSGNKLVDSQSKQ---------YSSKNN--FSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGID 625 (794)
T ss_pred cCCCCCceeeccccc---------cccCCC--ceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEE
Confidence 987442222111111 111111 2255555444 6999999999999995 34444466778889999999
Q ss_pred ECCCCCceeecCCCCeEEE
Q 010256 449 QTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 449 ~~~~~~~l~s~s~d~~v~i 467 (514)
.+.||+||+..+...-+-+
T Consensus 626 vt~DGkwilaTc~tyLlLi 644 (794)
T PF08553_consen 626 VTADGKWILATCKTYLLLI 644 (794)
T ss_pred ecCCCcEEEEeecceEEEE
Confidence 9999999877665554444
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.085 Score=53.17 Aligned_cols=227 Identities=11% Similarity=0.098 Sum_probs=126.9
Q ss_pred CCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCC--------------eEEEE
Q 010256 245 GETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG--------------SIRLI 310 (514)
Q Consensus 245 ~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg--------------~i~~w 310 (514)
...++++..+.+++..++.-++... ++. ......+.+++.+.. ..+.+.+... .++++
T Consensus 684 ~d~l~~~~~~~l~i~tid~iqkl~i------rtv-pl~~~prrI~~q~~s-l~~~v~s~r~e~~~~~~~ee~~~s~l~vl 755 (1096)
T KOG1897|consen 684 PDSLASANGGALTIGTIDEIQKLHI------RTV-PLGESPRRICYQESS-LTFGVLSNRIESSAEYYGEEYEVSFLRVL 755 (1096)
T ss_pred CceEEEecCCceEEEEecchhhcce------eee-cCCCChhheEecccc-eEEEEEecccccchhhcCCcceEEEEEEe
Confidence 4567777788888887764333211 121 124456777777743 4444443321 24555
Q ss_pred EcCCCccccccccceeccCCCCccceeeccccceeEEEEecC-CCEEEEEe----------C-CeEEEEEccCCCCceee
Q 010256 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN-GRHILSRD----------Y-MTLKLWDINMDSGPVAT 378 (514)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~~~~----------~-~~i~iwd~~~~~~~~~~ 378 (514)
|-.+.+. +..++... .+-...|.++.|..| +.+++.|. . |.|.||.+.. .+.+..
T Consensus 756 D~nTf~v-------l~~hef~~-----~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e-~~~L~~ 822 (1096)
T KOG1897|consen 756 DQNTFEV-------LSSHEFER-----NETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE-LNSLEL 822 (1096)
T ss_pred cCCceeE-------Eeeccccc-----cceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec-CCceee
Confidence 5554332 11111100 001135667778877 67777653 2 7888888775 444444
Q ss_pred eeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceee
Q 010256 379 FQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPL 458 (514)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 458 (514)
...+.-.. . +.++.. -+|++||. -...|++|+..+. +....-..+..++..+...-.+..++.
T Consensus 823 v~e~~v~G----------a---v~aL~~-fngkllA~--In~~vrLye~t~~-~eLr~e~~~~~~~~aL~l~v~gdeI~V 885 (1096)
T KOG1897|consen 823 VAETVVKG----------A---VYALVE-FNGKLLAG--INQSVRLYEWTTE-RELRIECNISNPIIALDLQVKGDEIAV 885 (1096)
T ss_pred eeeeeecc----------c---eeehhh-hCCeEEEe--cCcEEEEEEcccc-ceehhhhcccCCeEEEEEEecCcEEEE
Confidence 43322110 0 112221 26777774 4468999999876 333555678888999999999999999
Q ss_pred cCCCCeEEE--eeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecCcEEE
Q 010256 459 GSLSGVVRR--VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYM 511 (514)
Q Consensus 459 ~s~d~~v~i--~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~i 511 (514)
|..=+.+.+ +++.+-.-.+...++ +...++++++-.+.+++.+-...++++
T Consensus 886 gDlm~Sitll~y~~~eg~f~evArD~--~p~Wmtaveil~~d~ylgae~~gNlf~ 938 (1096)
T KOG1897|consen 886 GDLMRSITLLQYKGDEGNFEEVARDY--NPNWMTAVEILDDDTYLGAENSGNLFT 938 (1096)
T ss_pred eeccceEEEEEEeccCCceEEeehhh--CccceeeEEEecCceEEeecccccEEE
Confidence 988888887 222221100111111 345677777777777766655555554
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0068 Score=57.41 Aligned_cols=222 Identities=14% Similarity=0.096 Sum_probs=103.8
Q ss_pred cCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-
Q 010256 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA- 251 (514)
Q Consensus 173 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~- 251 (514)
.+..+.++|+|+.+ ++ +.+|.-.++. ... . .....+.-...+|.+.+ .+|+-
T Consensus 34 ~p~~ls~npngr~v------------~V-~g~geY~iyt-~~~---------~---r~k~~G~g~~~vw~~~n-~yAv~~ 86 (443)
T PF04053_consen 34 YPQSLSHNPNGRFV------------LV-CGDGEYEIYT-ALA---------W---RNKAFGSGLSFVWSSRN-RYAVLE 86 (443)
T ss_dssp --SEEEE-TTSSEE------------EE-EETTEEEEEE-TTT---------T---EEEEEEE-SEEEE-TSS-EEEEE-
T ss_pred CCeeEEECCCCCEE------------EE-EcCCEEEEEE-ccC---------C---cccccCceeEEEEecCc-cEEEEE
Confidence 34588999999986 44 5666666554 000 0 01122455678899854 56666
Q ss_pred cCCeEEEE-eccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCC
Q 010256 252 DDLRINLW-NLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (514)
Q Consensus 252 ~d~~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 330 (514)
...+|.++ +++ ...... +. ....+..+-. | .+|...+.+ .|.+||..+++.+ +.++.
T Consensus 87 ~~~~I~I~kn~~-~~~~k~--------i~-~~~~~~~If~---G-~LL~~~~~~-~i~~yDw~~~~~i----~~i~v--- 144 (443)
T PF04053_consen 87 SSSTIKIYKNFK-NEVVKS--------IK-LPFSVEKIFG---G-NLLGVKSSD-FICFYDWETGKLI----RRIDV--- 144 (443)
T ss_dssp TTS-EEEEETTE-E-TT--------------SS-EEEEE----S-SSEEEEETT-EEEEE-TTT--EE----EEESS---
T ss_pred CCCeEEEEEcCc-cccceE--------Ec-CCcccceEEc---C-cEEEEECCC-CEEEEEhhHccee----eEEec---
Confidence 78889996 443 222111 11 1122333322 6 666655544 8999999998763 33332
Q ss_pred CCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccc-cCCccceeeEEEcCC
Q 010256 331 PGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYE-NDSIFDKFECCLSGD 409 (514)
Q Consensus 331 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~ 409 (514)
.+|..+.|+++|.+++..++..+.|++.+. ..+.. ...++.....+.+++ ... |.+.+|..|
T Consensus 145 -----------~~vk~V~Ws~~g~~val~t~~~i~il~~~~--~~~~~-~~~~g~e~~f~~~~E~~~~---IkSg~W~~d 207 (443)
T PF04053_consen 145 -----------SAVKYVIWSDDGELVALVTKDSIYILKYNL--EAVAA-IPEEGVEDAFELIHEISER---IKSGCWVED 207 (443)
T ss_dssp ------------E-EEEEE-TTSSEEEEE-S-SEEEEEE-H--HHHHH-BTTTB-GGGEEEEEEE-S-----SEEEEETT
T ss_pred -----------CCCcEEEEECCCCEEEEEeCCeEEEEEecc--hhccc-ccccCchhceEEEEEecce---eEEEEEEcC
Confidence 248999999999999998777888888663 10000 000011111111111 111 237788765
Q ss_pred CCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 410 GGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 410 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
-++.| +.. +++. +-.|.. .++..-..+++-+...+..+.+.....|+.+..
T Consensus 208 -~fiYt-T~~-~lkY--l~~Ge~--~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~ 258 (443)
T PF04053_consen 208 -CFIYT-TSN-HLKY--LVNGET--GIIAHLDKPLYLLGYLPKENRLYLIDRDGNVIS 258 (443)
T ss_dssp -EEEEE--TT-EEEE--EETTEE--EEEEE-SS--EEEEEETTTTEEEEE-TT--EEE
T ss_pred -EEEEE-cCC-eEEE--EEcCCc--ceEEEcCCceEEEEEEccCCEEEEEECCCCEEE
Confidence 33333 333 6666 333322 233333445666666676566666666655554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.01 Score=50.57 Aligned_cols=201 Identities=17% Similarity=0.155 Sum_probs=108.8
Q ss_pred eEEEEEecCCCcEEEEEecCCe-EEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe---
Q 010256 285 ITSAEFHPTHCNMLAYSSSKGS-IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--- 360 (514)
Q Consensus 285 i~~v~~~p~~~~~l~~~~~dg~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--- 360 (514)
-..|+|+|..+.-++.+-.-|+ ..++|....+... ++...+ .+-+.+| =.|||||++|++..
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv----~~~s~~----~RHfyGH------Gvfs~dG~~LYATEndf 135 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPV----TLVSQE----GRHFYGH------GVFSPDGRLLYATENDF 135 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcE----EEeccc----Cceeecc------cccCCCCcEEEeecCCC
Confidence 4467788877666666666554 5688988776532 111111 1113334 36899999999841
Q ss_pred ---CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCC-------C----------
Q 010256 361 ---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-------N---------- 420 (514)
Q Consensus 361 ---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-------g---------- 420 (514)
.|.|-|||.+.....+..+..|.--. ..+.|.+||+.|+.+... |
T Consensus 136 d~~rGViGvYd~r~~fqrvgE~~t~GiGp---------------Hev~lm~DGrtlvvanGGIethpdfgR~~lNldsMe 200 (366)
T COG3490 136 DPNRGVIGVYDAREGFQRVGEFSTHGIGP---------------HEVTLMADGRTLVVANGGIETHPDFGRTELNLDSME 200 (366)
T ss_pred CCCCceEEEEecccccceecccccCCcCc---------------ceeEEecCCcEEEEeCCceecccccCccccchhhcC
Confidence 28999999986455556665554321 168899999999876431 1
Q ss_pred -cEEEEecCCCceee-eeec--CCCcceeEEEECCCCCceeecCCCCe-----EEE---eeCCCCCccccCCc-cccccc
Q 010256 421 -LFRVFGCSEGSAES-TTLE--ASKNPMRRQVQTPSRPSRPLGSLSGV-----VRR---VKGADNSALDANGN-AFDFSM 487 (514)
Q Consensus 421 -~i~iwd~~~~~~~~-~~~~--~~~~~v~~~~~~~~~~~l~s~s~d~~-----v~i---~~~~~~~~~~~~~~-~~~~~~ 487 (514)
++-+.|..++..+. .++. -+..+++.+...+|+..++-+-.-|. --+ ..|..+.-..+... ...+..
T Consensus 201 PSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~an 280 (366)
T COG3490 201 PSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFAN 280 (366)
T ss_pred ccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHh
Confidence 12233333332211 2222 33445666666666655543321111 000 11221111111111 112445
Q ss_pred ceEEEEEcCCCCEEEEEe--cCcEEEEeC
Q 010256 488 KLLHLAWHPSENSIACAA--SNSLYMYYA 514 (514)
Q Consensus 488 ~v~~~~~spd~~~l~~~~--~~~~~i~~~ 514 (514)
.|-+++-+.+..+++..+ .|..++|.+
T Consensus 281 YigsiA~n~~~glV~lTSP~GN~~vi~da 309 (366)
T COG3490 281 YIGSIAANRRDGLVALTSPRGNRAVIWDA 309 (366)
T ss_pred hhhheeecccCCeEEEecCCCCeEEEEEc
Confidence 677888887777777555 666777764
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.022 Score=50.87 Aligned_cols=266 Identities=12% Similarity=0.123 Sum_probs=130.6
Q ss_pred cceEEEEEcCCCCeEEEec----------CCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccc
Q 010256 36 DIISAIEFDKSGDHLATGD----------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDY 105 (514)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 105 (514)
+..-.+..+|||+.+++++ ..-.|.+||..+-....+.. ++-.| +....
T Consensus 36 g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~---------iP~k~--R~~~~---------- 94 (342)
T PF06433_consen 36 GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIE---------IPPKP--RAQVV---------- 94 (342)
T ss_dssp ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEE---------ETTS---B--BS----------
T ss_pred ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEe---------cCCcc--hheec----------
Confidence 3344577899999888754 23468999987654321110 00000 00000
Q ss_pred ccccccccceeEEEEeeCCCCcEEEEe--eCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCC
Q 010256 106 LKSLEIEEKINKIRWCQSANSALYLLS--TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183 (514)
Q Consensus 106 ~~~~~~~~~v~~i~~~~~~~~~~l~s~--~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 183 (514)
.....+++ +.+|++++.. +--..|.|-|+..++......... +...-|.+
T Consensus 95 -------~~~~~~~l--s~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG-------------------C~~iyP~~ 146 (342)
T PF06433_consen 95 -------PYKNMFAL--SADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG-------------------CWLIYPSG 146 (342)
T ss_dssp ---------GGGEEE---TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS-------------------EEEEEEEE
T ss_pred -------ccccceEE--ccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC-------------------EEEEEecC
Confidence 01122344 5667776664 556778888888888776665541 11111111
Q ss_pred -CccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC-CCEEEEecCCeEEEEec
Q 010256 184 -GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISADDLRINLWNL 261 (514)
Q Consensus 184 -~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~d~~i~iwd~ 261 (514)
+.+ .+-|.||.+.-.. +...-. ...+....|...+...+..-++... +.++....+|.|+--|+
T Consensus 147 ~~~F------------~~lC~DGsl~~v~-Ld~~Gk-~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dl 212 (342)
T PF06433_consen 147 NRGF------------SMLCGDGSLLTVT-LDADGK-EAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADL 212 (342)
T ss_dssp TTEE------------EEEETTSCEEEEE-ETSTSS-EEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEE
T ss_pred CCce------------EEEecCCceEEEE-ECCCCC-EeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEec
Confidence 112 5556677666554 221111 1111122232222222223344444 44555668888888888
Q ss_pred cCCCceee-eeccCC---CcccccCCceEEEEEecCCCcEEEEEec--C-------CeEEEEEcCCCccccccccceecc
Q 010256 262 EISNQSFN-IVDVKP---ANMEDLTEVITSAEFHPTHCNMLAYSSS--K-------GSIRLIDMRQSALCDTHSKLFEEQ 328 (514)
Q Consensus 262 ~~~~~~~~-~~~~~~---~~~~~~~~~i~~v~~~p~~~~~l~~~~~--d-------g~i~~wd~~~~~~~~~~~~~~~~~ 328 (514)
........ .+.+-. ..-....+.-.-+++++..+++++.-.. + ..|.++|+.+++. +..++..
T Consensus 213 sg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~kr----v~Ri~l~ 288 (342)
T PF06433_consen 213 SGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKR----VARIPLE 288 (342)
T ss_dssp TTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEE----EEEEEEE
T ss_pred cCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeE----EEEEeCC
Confidence 74432211 111000 0001112333457777765344433221 1 1477888888776 3444432
Q ss_pred CCCCccceeeccccceeEEEEecCCC-EEEEE--eCCeEEEEEccCCCCceeeeeec
Q 010256 329 EAPGTRSFFTEIIASISDIKFARNGR-HILSR--DYMTLKLWDINMDSGPVATFQVH 382 (514)
Q Consensus 329 ~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~--~~~~i~iwd~~~~~~~~~~~~~~ 382 (514)
.++.+|+.+.+.+ +|++. .++.+.+||..+ ++.+.++..-
T Consensus 289 -------------~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t-Gk~~~~~~~l 331 (342)
T PF06433_consen 289 -------------HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT-GKLVRSIEQL 331 (342)
T ss_dssp -------------EEESEEEEESSSS-EEEEEETTTTEEEEEETTT---EEEEE---
T ss_pred -------------CccceEEEccCCCcEEEEEcCCCCeEEEEeCcC-CcEEeehhcc
Confidence 3688999999877 44443 348999999998 8888887643
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0089 Score=60.05 Aligned_cols=101 Identities=20% Similarity=0.199 Sum_probs=71.2
Q ss_pred EEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceec
Q 010256 249 ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 327 (514)
Q Consensus 249 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 327 (514)
..| ++..+..||.+.....+ +.... ..........|++-+.+| .||+|+.+|.||+||- .+...
T Consensus 546 flGls~n~lfriDpR~~~~k~--v~~~~-k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~-~g~~A--------- 610 (794)
T PF08553_consen 546 FLGLSDNSLFRIDPRLSGNKL--VDSQS-KQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDR-LGKRA--------- 610 (794)
T ss_pred EEEECCCceEEeccCCCCCce--eeccc-cccccCCCceEEEecCCc--eEEEEeCCCcEEeecc-cchhh---------
Confidence 456 88899999998654211 11110 112245567888888887 8999999999999993 33221
Q ss_pred cCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEcc
Q 010256 328 QEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDIN 370 (514)
Q Consensus 328 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~ 370 (514)
...+.+...+|..|..+.||+++++..+..|.+++..
T Consensus 611 ------KT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 611 ------KTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTL 647 (794)
T ss_pred ------hhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence 1224455579999999999999999877788888864
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.026 Score=47.50 Aligned_cols=110 Identities=15% Similarity=0.112 Sum_probs=77.9
Q ss_pred EecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEE
Q 010256 290 FHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWD 368 (514)
Q Consensus 290 ~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd 368 (514)
.-++...+++.|+..+.+.--|..+|++.++.+.- ..|.+-+.- -|.+++.|-. |.+++.+
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg-----------------~RiE~sa~v-vgdfVV~GCy~g~lYfl~ 79 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILG-----------------VRIECSAIV-VGDFVVLGCYSGGLYFLC 79 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehhhC-----------------ceeeeeeEE-ECCEEEEEEccCcEEEEE
Confidence 34454578899999999999999999876542211 122222222 4677888866 9999999
Q ss_pred ccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCcee
Q 010256 369 INMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
.++ +.....+...+.... .....+++.+|..|+.|+..+..|.++..+.
T Consensus 80 ~~t-Gs~~w~f~~~~~vk~---------------~a~~d~~~glIycgshd~~~yalD~~~~~cV 128 (354)
T KOG4649|consen 80 VKT-GSQIWNFVILETVKV---------------RAQCDFDGGLIYCGSHDGNFYALDPKTYGCV 128 (354)
T ss_pred ecc-hhheeeeeehhhhcc---------------ceEEcCCCceEEEecCCCcEEEecccccceE
Confidence 998 766666655443321 4556779999999999999999999876554
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.045 Score=51.48 Aligned_cols=193 Identities=15% Similarity=0.171 Sum_probs=120.4
Q ss_pred eEEEEECCCCCEEEE-e-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEe--cCCeEEEEE
Q 010256 236 INSISNNSDGETFIS-A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS--SKGSIRLID 311 (514)
Q Consensus 236 v~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~--~dg~i~~wd 311 (514)
...+++++.+..+.. . .+..|.+.|..+......+ ........++++|++..+.++-. .++.+.+.|
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~---------~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid 146 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSI---------PVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVID 146 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEe---------eeccCCceEEECCCCCEEEEEecccCCceEEEEe
Confidence 456788888875544 4 6899999997755433221 11225678999999944444444 368888888
Q ss_pred cCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe--CCeEEEEEccCCCCcee-----eeeeccc
Q 010256 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVA-----TFQVHEH 384 (514)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~~~i~iwd~~~~~~~~~-----~~~~~~~ 384 (514)
..+++.... ..... .+ ..++++|+|..++... ++.|.+.|... ..... .......
T Consensus 147 ~~t~~~~~~----~~vG~------------~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~-~~v~~~~~~~~~~~~~~ 208 (381)
T COG3391 147 AATNKVTAT----IPVGN------------TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSG-NSVVRGSVGSLVGVGTG 208 (381)
T ss_pred CCCCeEEEE----EecCC------------Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCC-cceeccccccccccCCC
Confidence 887765321 11110 23 7899999999888764 49999999764 22221 0111111
Q ss_pred cccccccccccCCccceeeEEEcCCCCEEEEEeCC---CcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeec-C
Q 010256 385 LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG-S 460 (514)
Q Consensus 385 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-s 460 (514)
+ ..+.++|+|+++...... +.+...|..++................+...|+++++.+. +
T Consensus 209 P----------------~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~ 272 (381)
T COG3391 209 P----------------AGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANS 272 (381)
T ss_pred C----------------ceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEec
Confidence 1 168999999976654433 5888888887633322122221144568899999987776 4
Q ss_pred CCCeEEEeeCC
Q 010256 461 LSGVVRRVKGA 471 (514)
Q Consensus 461 ~d~~v~i~~~~ 471 (514)
..+.+.+.++.
T Consensus 273 ~~~~V~vid~~ 283 (381)
T COG3391 273 QGGTVSVIDGA 283 (381)
T ss_pred CCCeEEEEeCC
Confidence 44777774444
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.059 Score=48.18 Aligned_cols=258 Identities=9% Similarity=0.033 Sum_probs=124.6
Q ss_pred CCCCcEEEEee----------CCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 123 SANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 123 ~~~~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
+++++.+++++ ..-.|.+||..+-+......++..+.... .......+++.||+.+.+.+.
T Consensus 44 spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~--------~~~~~~~~ls~dgk~~~V~N~- 114 (342)
T PF06433_consen 44 SPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV--------VPYKNMFALSADGKFLYVQNF- 114 (342)
T ss_dssp -TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B--------S--GGGEEE-TTSSEEEEEEE-
T ss_pred CCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee--------cccccceEEccCCcEEEEEcc-
Confidence 46666766643 34579999999988777666553211100 011114567777776622111
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeec
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVD 272 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~ 272 (514)
+-..+|.+-| +..... ... -....+..+-=.....+...|.||++.-..+...++......
T Consensus 115 ---------TPa~SVtVVD-l~~~kv------v~e---i~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t 175 (342)
T PF06433_consen 115 ---------TPATSVTVVD-LAAKKV------VGE---IDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKST 175 (342)
T ss_dssp ---------SSSEEEEEEE-TTTTEE------EEE---EEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEE
T ss_pred ---------CCCCeEEEEE-CCCCce------eee---ecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeec
Confidence 1112333333 111100 000 001111111111222333445888888887775444332110
Q ss_pred cCCCcccccCCce-EEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 273 VKPANMEDLTEVI-TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 273 ~~~~~~~~~~~~i-~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
.-+.....++ ..-++...+ ..++--+.+|.|+--|+....... ...++.-...... -..-.+...-+++++
T Consensus 176 ---~~F~~~~dp~f~~~~~~~~~-~~~~F~Sy~G~v~~~dlsg~~~~~--~~~~~~~t~~e~~--~~WrPGG~Q~~A~~~ 247 (342)
T PF06433_consen 176 ---KVFDPDDDPLFEHPAYSRDG-GRLYFVSYEGNVYSADLSGDSAKF--GKPWSLLTDAEKA--DGWRPGGWQLIAYHA 247 (342)
T ss_dssp ---EESSTTTS-B-S--EEETTT-TEEEEEBTTSEEEEEEETTSSEEE--EEEEESS-HHHHH--TTEEE-SSS-EEEET
T ss_pred ---cccCCCCcccccccceECCC-CeEEEEecCCEEEEEeccCCcccc--cCcccccCccccc--cCcCCcceeeeeecc
Confidence 0122222222 234455555 456668899999998887654211 1222210000000 000113455678887
Q ss_pred CCCEEEE----Ee-----C--CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCC-EEEEE-eC
Q 010256 352 NGRHILS----RD-----Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATG-SY 418 (514)
Q Consensus 352 ~g~~l~~----~~-----~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~-~~ 418 (514)
....|+. |. + ..|.++|+.+ ++.+.++...... .++.++.|.+ +|++. ..
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t-~krv~Ri~l~~~~----------------~Si~Vsqd~~P~L~~~~~~ 310 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT-HKRVARIPLEHPI----------------DSIAVSQDDKPLLYALSAG 310 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEETTT-TEEEEEEEEEEEE----------------SEEEEESSSS-EEEEEETT
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEECCC-CeEEEEEeCCCcc----------------ceEEEccCCCcEEEEEcCC
Confidence 5544443 21 2 3678888887 8888888754332 2788998876 55544 46
Q ss_pred CCcEEEEecCCCcee
Q 010256 419 SNLFRVFGCSEGSAE 433 (514)
Q Consensus 419 dg~i~iwd~~~~~~~ 433 (514)
++.+.+||..+++..
T Consensus 311 ~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 311 DGTLDVYDAATGKLV 325 (342)
T ss_dssp TTEEEEEETTT--EE
T ss_pred CCeEEEEeCcCCcEE
Confidence 789999999998443
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.11 Score=50.73 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=21.1
Q ss_pred CCCEEEEEeCCCcEEEEecCCCcee
Q 010256 409 DGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 409 ~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
.+.+|+.++.||.|+.+|.++|+.+
T Consensus 405 ~g~~v~~g~~dG~l~ald~~tG~~l 429 (488)
T cd00216 405 AGNLVFAGAADGYFRAFDATTGKEL 429 (488)
T ss_pred cCCeEEEECCCCeEEEEECCCCcee
Confidence 4678888899999999999998544
|
The alignment model contains an 8-bladed beta-propeller. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00034 Score=40.39 Aligned_cols=31 Identities=19% Similarity=0.483 Sum_probs=28.9
Q ss_pred ccccceEEEEEcCCCCeEEEecCCCeEEEEE
Q 010256 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFE 63 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~ 63 (514)
.|.+.|++++|++++.++++++.|+.+++|+
T Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 5778999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.14 Score=46.79 Aligned_cols=167 Identities=14% Similarity=0.136 Sum_probs=69.8
Q ss_pred ccCeEEEEECCCCC-EEEEe----cCC-eEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEe----
Q 010256 233 DYHINSISNNSDGE-TFISA----DDL-RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS---- 302 (514)
Q Consensus 233 ~~~v~~~~~~~~~~-~l~s~----~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~---- 302 (514)
...+..+.|+|... +|+-| .+. .-|||-+++.......+ .+ ......+..=-|.|+|..+...+.
T Consensus 187 ~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v--~~---~~~~e~~gHEfw~~DG~~i~y~~~~~~~ 261 (386)
T PF14583_consen 187 TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKV--HR---RMEGESVGHEFWVPDGSTIWYDSYTPGG 261 (386)
T ss_dssp SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EES--S------TTEEEEEEEE-TTSS-EEEEEEETTT
T ss_pred CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceee--ec---CCCCcccccccccCCCCEEEEEeecCCC
Confidence 34567788888644 44444 233 24777776554433321 11 111333445568999944444333
Q ss_pred cCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEE-EeC--C--------------eEE
Q 010256 303 SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS-RDY--M--------------TLK 365 (514)
Q Consensus 303 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~--~--------------~i~ 365 (514)
.+..|.-+|+.+++.. ..... .....+.-++||++++. |++ . -|+
T Consensus 262 ~~~~i~~~d~~t~~~~----~~~~~--------------p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~ 323 (386)
T PF14583_consen 262 QDFWIAGYDPDTGERR----RLMEM--------------PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIY 323 (386)
T ss_dssp --EEEEEE-TTT--EE----EEEEE---------------SEEEEEE-TTSSEEEEEE-------------------EEE
T ss_pred CceEEEeeCCCCCCce----EEEeC--------------CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEE
Confidence 1335666677765431 01111 13445566789999886 443 1 345
Q ss_pred EEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEE-EEeCCCcEEEEecC
Q 010256 366 LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA-TGSYSNLFRVFGCS 428 (514)
Q Consensus 366 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~dg~i~iwd~~ 428 (514)
++++.. .....+..|....... ..+....---..|+|||++++ ++...|...||=++
T Consensus 324 ~~~~~~--~~~~~l~~h~~sw~v~----~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 324 LFDVEA--GRFRKLARHDTSWKVL----DGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp EEETTT--TEEEEEEE-------B----TTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred Eecccc--CceeeeeeccCcceee----cCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 566653 2223333332111000 000000001579999999866 45567777776443
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.14 Score=46.04 Aligned_cols=222 Identities=13% Similarity=0.084 Sum_probs=110.6
Q ss_pred EEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCc
Q 010256 239 ISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA 316 (514)
Q Consensus 239 ~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~ 316 (514)
..|.++...|+-+ ..+.|.-|+..+++...- . ....+.++..-..+ ..|+++.. .+.+++..++.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~---------~-~p~~~~~~~~~d~~-g~Lv~~~~--g~~~~~~~~~~ 96 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRVF---------P-SPGGFSSGALIDAG-GRLIACEH--GVRLLDPDTGG 96 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEEE---------E-CCCCcccceeecCC-CeEEEEcc--ccEEEeccCCc
Confidence 3477777755555 789999999875543321 1 23333444433333 24443332 34556665544
Q ss_pred cccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE-e---------CCeEEEEEccCCCCceeeeeeccccc
Q 010256 317 LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-D---------YMTLKLWDINMDSGPVATFQVHEHLR 386 (514)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~---------~~~i~iwd~~~~~~~~~~~~~~~~~~ 386 (514)
............. ....+.+...|+|.+.++. . ...-.||-+...+..+..+..+-...
T Consensus 97 ~~t~~~~~~~~~~-----------~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~ 165 (307)
T COG3386 97 KITLLAEPEDGLP-----------LNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIP 165 (307)
T ss_pred eeEEeccccCCCC-----------cCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEec
Confidence 3111011111111 1356778889999888862 2 11113444442133333333221111
Q ss_pred cccccccccCCccceeeEEEcCCCCEEEEEeC-CCcEEEEecCC--C---cee-eeeecCCCcceeEEEECCCCCceeec
Q 010256 387 PKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SNLFRVFGCSE--G---SAE-STTLEASKNPMRRQVQTPSRPSRPLG 459 (514)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~--~---~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~ 459 (514)
..++||||++.|..+.. .+.|+-|++.. + ... ...........-.++...+|.+.+++
T Consensus 166 ---------------NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a 230 (307)
T COG3386 166 ---------------NGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAA 230 (307)
T ss_pred ---------------CceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEec
Confidence 17999999987776654 47888887752 1 111 11122233444456667777777555
Q ss_pred CCCC-eEEE--eeCCCCCccccCCcccccccceEEEEE-cCCCCEEEEEe
Q 010256 460 SLSG-VVRR--VKGADNSALDANGNAFDFSMKLLHLAW-HPSENSIACAA 505 (514)
Q Consensus 460 s~d~-~v~i--~~~~~~~~~~~~~~~~~~~~~v~~~~~-spd~~~l~~~~ 505 (514)
-.+| .|.+ -+|......++ ....+++++| .|+.+.|.+.+
T Consensus 231 ~~~g~~v~~~~pdG~l~~~i~l------P~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 231 VWGGGRVVRFNPDGKLLGEIKL------PVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred ccCCceEEEECCCCcEEEEEEC------CCCCCccceEeCCCcCEEEEEe
Confidence 4443 4444 22222211111 1256677777 45566666544
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.024 Score=52.12 Aligned_cols=137 Identities=13% Similarity=0.168 Sum_probs=63.6
Q ss_pred CeEEEEECCCCCEEEEe---------------------cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEe--
Q 010256 235 HINSISNNSDGETFISA---------------------DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH-- 291 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~---------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~-- 291 (514)
--.++.|.|..+.++|+ ...++.+||+.+.+.. +.++ +......+..|.|.
T Consensus 182 ~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~-Q~id-----Lg~~g~~pLEvRflH~ 255 (461)
T PF05694_consen 182 FGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLL-QTID-----LGEEGQMPLEVRFLHD 255 (461)
T ss_dssp ----EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEE-EEEE-----S-TTEEEEEEEEE-SS
T ss_pred CCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEe-eEEe-----cCCCCCceEEEEecCC
Confidence 34577788888887763 1368999999965544 3332 22222345567775
Q ss_pred cCCCcEEEEEecCCeEEEEEc-CCCccccccccceeccCC-------CCccceeeccccceeEEEEecCCCEEEEEeC--
Q 010256 292 PTHCNMLAYSSSKGSIRLIDM-RQSALCDTHSKLFEEQEA-------PGTRSFFTEIIASISDIKFARNGRHILSRDY-- 361 (514)
Q Consensus 292 p~~~~~l~~~~~dg~i~~wd~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-- 361 (514)
|+...-|+.+.-...|..|-- ..+.-.. .++.+.... |....-+..-..-|+.+.+|.|.++|..+.-
T Consensus 256 P~~~~gFvg~aLss~i~~~~k~~~g~W~a--~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~ 333 (461)
T PF05694_consen 256 PDANYGFVGCALSSSIWRFYKDDDGEWAA--EKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLH 333 (461)
T ss_dssp TT--EEEEEEE--EEEEEEEE-ETTEEEE--EEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTT
T ss_pred CCccceEEEEeccceEEEEEEcCCCCeee--eEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccC
Confidence 444234555555556655543 3333111 122221111 0001111122356899999999999998753
Q ss_pred CeEEEEEccCCCCceeee
Q 010256 362 MTLKLWDINMDSGPVATF 379 (514)
Q Consensus 362 ~~i~iwd~~~~~~~~~~~ 379 (514)
|.|+.||+..+.++..+-
T Consensus 334 GdvrqYDISDP~~Pkl~g 351 (461)
T PF05694_consen 334 GDVRQYDISDPFNPKLVG 351 (461)
T ss_dssp TEEEEEE-SSTTS-EEEE
T ss_pred CcEEEEecCCCCCCcEEe
Confidence 999999999766655443
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.018 Score=53.53 Aligned_cols=141 Identities=11% Similarity=0.125 Sum_probs=91.7
Q ss_pred EEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCC--------EEEEEeCCeEEEEE
Q 010256 297 MLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR--------HILSRDYMTLKLWD 368 (514)
Q Consensus 297 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~--------~l~~~~~~~i~iwd 368 (514)
+|.++.....++-.|++.|+. +..|+.+. .|.-+.+.|+.+ .|+.-++..|.-||
T Consensus 348 il~~~~~~~~l~klDIE~GKI----VeEWk~~~-------------di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriD 410 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKI----VEEWKFED-------------DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRID 410 (644)
T ss_pred EeeCCCCcCcceeeeccccee----eeEeeccC-------------CcceeeccCCcchhcccccccEEeecCCceEEec
Confidence 445566667788889999987 44455443 366677777543 23333668899999
Q ss_pred ccCCCC-ceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEE
Q 010256 369 INMDSG-PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQ 447 (514)
Q Consensus 369 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 447 (514)
.+-.++ .+...++|+-.. +.-+ .|.+-. ...+|+.||.+|.|++||- .+......+++-..+|..+
T Consensus 411 pRv~~~~kl~~~q~kqy~~---------k~nF--sc~aTT-~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hV 477 (644)
T KOG2395|consen 411 PRVQGKNKLAVVQSKQYST---------KNNF--SCFATT-ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHV 477 (644)
T ss_pred ccccCcceeeeeecccccc---------cccc--ceeeec-CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeE
Confidence 886444 233333333211 1111 133333 4458999999999999998 5544446788899999999
Q ss_pred EECCCCCceeecCCCCeEEE
Q 010256 448 VQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 448 ~~~~~~~~l~s~s~d~~v~i 467 (514)
..+.+|++|+.-....-+-+
T Consensus 478 dvtadGKwil~Tc~tyLlLi 497 (644)
T KOG2395|consen 478 DVTADGKWILATCKTYLLLI 497 (644)
T ss_pred EeeccCcEEEEecccEEEEE
Confidence 99999999876665544443
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0016 Score=39.37 Aligned_cols=33 Identities=18% Similarity=0.326 Sum_probs=29.7
Q ss_pred ccccceEEEEEcCCCCeEEEecCCCeEEEEEec
Q 010256 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERT 65 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~ 65 (514)
.-...|.+++|+|..++||.|+.+|.|.||.+.
T Consensus 9 ~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 9 NLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 345679999999999999999999999999983
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.051 Score=39.67 Aligned_cols=64 Identities=17% Similarity=0.243 Sum_probs=39.4
Q ss_pred cCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEe---cCCCcEEEEEecCCeEEE
Q 010256 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH---PTHCNMLAYSSSKGSIRL 309 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~---p~~~~~l~~~~~dg~i~~ 309 (514)
..|.+++-... ..++.+ .+|+|-+|+-. ....++ + ....+.++.+. -+|..-|++|-.+|.|-+
T Consensus 43 ~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWRi---K------SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 43 DKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWRI---K------SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred cceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeeee---c------cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 34556655555 457777 99999999764 333322 1 23335666543 344457899999998753
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.21 Score=45.98 Aligned_cols=178 Identities=14% Similarity=0.103 Sum_probs=99.3
Q ss_pred CeEEEEeccCCCceeeeeccCCCcccccCCceEEEE---EecC---CCcEEEEEec----------CCeEEEEEcCCCcc
Q 010256 254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAE---FHPT---HCNMLAYSSS----------KGSIRLIDMRQSAL 317 (514)
Q Consensus 254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~---~~p~---~~~~l~~~~~----------dg~i~~wd~~~~~~ 317 (514)
..|++.|..+.+.. ..+ .+.. ...+.+++ +..+ ...+|+.|+. .|.|.++++.....
T Consensus 2 s~i~l~d~~~~~~~-~~~-----~l~~-~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~ 74 (321)
T PF03178_consen 2 SSIRLVDPTTFEVL-DSF-----ELEP-NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPE 74 (321)
T ss_dssp -EEEEEETTTSSEE-EEE-----EEET-TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS--
T ss_pred cEEEEEeCCCCeEE-EEE-----ECCC-CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccc
Confidence 35777777655433 222 2221 23344443 3322 1267777764 28899999988410
Q ss_pred ccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCC-ceeeeeeccccccccccccccC
Q 010256 318 CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSG-PVATFQVHEHLRPKLCDLYEND 396 (514)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 396 (514)
....++.... ....++|++++-- ++ .|+++..+.|.+|++.. .+ ....-..+... .
T Consensus 75 ~~~~l~~i~~----------~~~~g~V~ai~~~-~~-~lv~~~g~~l~v~~l~~-~~~l~~~~~~~~~~-~--------- 131 (321)
T PF03178_consen 75 NNFKLKLIHS----------TEVKGPVTAICSF-NG-RLVVAVGNKLYVYDLDN-SKTLLKKAFYDSPF-Y--------- 131 (321)
T ss_dssp ---EEEEEEE----------EEESS-EEEEEEE-TT-EEEEEETTEEEEEEEET-TSSEEEEEEE-BSS-S---------
T ss_pred cceEEEEEEE----------EeecCcceEhhhh-CC-EEEEeecCEEEEEEccC-cccchhhheecceE-E---------
Confidence 0000111111 1234678888766 34 47777778999999996 44 22222222211 0
Q ss_pred CccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee--cCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 397 SIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTL--EASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 397 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
..+....+++|+.|..-..+.++...........+ ......+.++.+-+++..++.+..+|.+.+
T Consensus 132 ------i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~ 198 (321)
T PF03178_consen 132 ------ITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFV 198 (321)
T ss_dssp ------EEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEE
T ss_pred ------EEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEE
Confidence 33344446799999988888888655422222222 234556788888866679999999999998
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.22 Score=45.62 Aligned_cols=78 Identities=13% Similarity=0.145 Sum_probs=37.2
Q ss_pred cCCceEEEEEecCCCcEEEEEecC---Ce-EEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEE
Q 010256 281 LTEVITSAEFHPTHCNMLAYSSSK---GS-IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI 356 (514)
Q Consensus 281 ~~~~i~~v~~~p~~~~~l~~~~~d---g~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 356 (514)
....+..+.|+|..+.+|+.|-+. .. -|||-+++.... .+.+..+.. ...+..=-|.|||..|
T Consensus 186 ~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~---~~~v~~~~~----------~e~~gHEfw~~DG~~i 252 (386)
T PF14583_consen 186 DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSN---VKKVHRRME----------GESVGHEFWVPDGSTI 252 (386)
T ss_dssp ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS------EESS---T----------TEEEEEEEE-TTSS-E
T ss_pred cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCc---ceeeecCCC----------CcccccccccCCCCEE
Confidence 456778899999987777776652 21 355655442211 111111110 1234555688898877
Q ss_pred EE-E----e-CCeEEEEEccC
Q 010256 357 LS-R----D-YMTLKLWDINM 371 (514)
Q Consensus 357 ~~-~----~-~~~i~iwd~~~ 371 (514)
.- + . +..|.-+|+.+
T Consensus 253 ~y~~~~~~~~~~~i~~~d~~t 273 (386)
T PF14583_consen 253 WYDSYTPGGQDFWIAGYDPDT 273 (386)
T ss_dssp EEEEEETTT--EEEEEE-TTT
T ss_pred EEEeecCCCCceEEEeeCCCC
Confidence 64 2 1 23455566665
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0037 Score=59.09 Aligned_cols=76 Identities=20% Similarity=0.243 Sum_probs=61.0
Q ss_pred cCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceE-EEEEecCCCcEEEEEecCCeEEEEE
Q 010256 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT-SAEFHPTHCNMLAYSSSKGSIRLID 311 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~-~v~~~p~~~~~l~~~~~dg~i~~wd 311 (514)
..+.-+.|+|.-..+|.+ .+|.|.+..++ .+... ++.-+...++ +++|.||| ++||.|-.||+|++.|
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlw--------tip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~D 90 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLW--------TIPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLHD 90 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeE--------eccCCCCccceeeeecCCC-CEEEEEecCCeEEEEE
Confidence 456778999999999999 99999998887 33333 2333444555 99999999 9999999999999999
Q ss_pred cCCCcccc
Q 010256 312 MRQSALCD 319 (514)
Q Consensus 312 ~~~~~~~~ 319 (514)
..++....
T Consensus 91 ve~~~~l~ 98 (665)
T KOG4640|consen 91 VEKGGRLV 98 (665)
T ss_pred ccCCCcee
Confidence 99987653
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.018 Score=56.93 Aligned_cols=143 Identities=10% Similarity=0.086 Sum_probs=81.6
Q ss_pred ceeEEEEecCCCEEEEEe-------C--CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEE
Q 010256 343 SISDIKFARNGRHILSRD-------Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 413 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~~~-------~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 413 (514)
.+.+.+++|+|+.++.-. + ..|.+++.. +.......+.. ...-.|+|||+.|
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g--g~~~~lt~g~~-----------------~t~PsWspDG~~l 411 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG--GVAVQVLEGHS-----------------LTRPSWSLDADAV 411 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC--CcceeeecCCC-----------------CCCceECCCCCce
Confidence 578899999999887632 3 355555543 32222222221 1167899998887
Q ss_pred EEEeCC------------CcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE---ee--CCCCCcc
Q 010256 414 ATGSYS------------NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR---VK--GADNSAL 476 (514)
Q Consensus 414 ~s~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i---~~--~~~~~~~ 476 (514)
++.... +.+++.++..+... . .....|..+.|+|||+.++... ++.|.+ .. +.. .
T Consensus 412 w~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~-~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~-- 483 (591)
T PRK13616 412 WVVVDGNTVVRVIRDPATGQLARTPVDASAVA-S---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-Y-- 483 (591)
T ss_pred EEEecCcceEEEeccCCCceEEEEeccCchhh-h---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-e--
Confidence 776532 23333344332111 1 2245699999999999888766 477777 22 221 1
Q ss_pred ccCCc--c-cccccceEEEEEcCCCCEEEEEecCcEEEE
Q 010256 477 DANGN--A-FDFSMKLLHLAWHPSENSIACAASNSLYMY 512 (514)
Q Consensus 477 ~~~~~--~-~~~~~~v~~~~~spd~~~l~~~~~~~~~i~ 512 (514)
.+... . .+....+.+++|..++.+++........+|
T Consensus 484 ~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~ 522 (591)
T PRK13616 484 ALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVW 522 (591)
T ss_pred eecccEEeecccCCccccceEecCCEEEEEecCCCCceE
Confidence 11100 1 123344688999999997654433333344
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.004 Score=58.84 Aligned_cols=93 Identities=16% Similarity=0.173 Sum_probs=67.6
Q ss_pred cceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCC
Q 010256 342 ASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 420 (514)
Q Consensus 342 ~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 420 (514)
..+..+.|+|.-.++|.+.. |.|-+..+. .+.+.++..+...+. .+++|.|||++||.|-.||
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~p~~~v~--------------~sL~W~~DGkllaVg~kdG 84 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPIPGENVT--------------ASLCWRPDGKLLAVGFKDG 84 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec--cceeEeccCCCCccc--------------eeeeecCCCCEEEEEecCC
Confidence 35788999999999999865 888888776 455555554443211 1899999999999999999
Q ss_pred cEEEEecCCCceeeeeecCCCcceeEEEEC
Q 010256 421 LFRVFGCSEGSAESTTLEASKNPMRRQVQT 450 (514)
Q Consensus 421 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 450 (514)
+|++.|++++..+......-..+|..+.|.
T Consensus 85 ~I~L~Dve~~~~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 85 TIRLHDVEKGGRLVSFLFSVETDISKGIWD 114 (665)
T ss_pred eEEEEEccCCCceeccccccccchheeecc
Confidence 999999998855543223334455566664
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.28 Score=43.91 Aligned_cols=228 Identities=15% Similarity=0.137 Sum_probs=121.2
Q ss_pred CCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccc
Q 010256 243 SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH 321 (514)
Q Consensus 243 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 321 (514)
..++.|+.| ++| +.+++........++. ....|..+...|+- +.+++-+ |+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~---------~~~~I~ql~vl~~~-~~llvLs-d~~l~~~~L~~l~~~~~~ 72 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL---------KLSSITQLSVLPEL-NLLLVLS-DGQLYVYDLDSLEPVSTS 72 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe---------ecceEEEEEEeccc-CEEEEEc-CCccEEEEchhhcccccc
Confidence 457788888 788 8999984333332221 23349999999987 5555443 599999999875443210
Q ss_pred ccceeccCCCCccceeeccccceeEEE---EecCCCEEEEEeCCeEEEEEccCC---C-Cceeeeeeccccccccccccc
Q 010256 322 SKLFEEQEAPGTRSFFTEIIASISDIK---FARNGRHILSRDYMTLKLWDINMD---S-GPVATFQVHEHLRPKLCDLYE 394 (514)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~i~~~~---~s~~g~~l~~~~~~~i~iwd~~~~---~-~~~~~~~~~~~~~~~~~~~~~ 394 (514)
. ......... ..........+...+ -......|+.+...+|.+|..... . +..+.+.....
T Consensus 73 ~-~~~~~~~~~-~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~---------- 140 (275)
T PF00780_consen 73 A-PLAFPKSRS-LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDP---------- 140 (275)
T ss_pred c-ccccccccc-ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCC----------
Confidence 0 000000000 000000112233333 223445666677779999988752 1 33344443332
Q ss_pred cCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCC------------CcceeEEEECCCCCceeecCCC
Q 010256 395 NDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS------------KNPMRRQVQTPSRPSRPLGSLS 462 (514)
Q Consensus 395 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~s~s~d 462 (514)
+.+++|. ++.|+.|..+ ...+.|+.++... ..+... ..++ .+..-+++.+|++- .+
T Consensus 141 ------~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~-~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~Ll~~-~~ 208 (275)
T PF00780_consen 141 ------PSSIAFL--GNKICVGTSK-GFYLIDLNTGSPS-ELLDPSDSSSSFKSRNSSSKPL-GIFQLSDNEFLLCY-DN 208 (275)
T ss_pred ------cEEEEEe--CCEEEEEeCC-ceEEEecCCCCce-EEeCccCCcchhhhcccCCCce-EEEEeCCceEEEEe-cc
Confidence 2278887 5677777654 5788899866432 122111 1222 23333445666654 34
Q ss_pred CeEEE-eeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecCcEEEEe
Q 010256 463 GVVRR-VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 463 ~~v~i-~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~i~~ 513 (514)
-.+.+ ..|.... ...+.......++++ ...+|.+..++.+-||+
T Consensus 209 ~g~fv~~~G~~~r-----~~~i~W~~~p~~~~~--~~pyli~~~~~~iEV~~ 253 (275)
T PF00780_consen 209 IGVFVNKNGEPSR-----KSTIQWSSAPQSVAY--SSPYLIAFSSNSIEVRS 253 (275)
T ss_pred eEEEEcCCCCcCc-----ccEEEcCCchhEEEE--ECCEEEEECCCEEEEEE
Confidence 44455 3333221 122234556667776 45688888888888876
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.34 Score=44.57 Aligned_cols=115 Identities=15% Similarity=0.122 Sum_probs=69.9
Q ss_pred CccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEE
Q 010256 232 HDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (514)
Q Consensus 232 h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd 311 (514)
..++|.+++-- +..|+.+..+.|.+|++...+..... ........+.++... + ++++.|.....+.++.
T Consensus 87 ~~g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~~~l~~~------~~~~~~~~i~sl~~~--~-~~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 87 VKGPVTAICSF--NGRLVVAVGNKLYVYDLDNSKTLLKK------AFYDSPFYITSLSVF--K-NYILVGDAMKSVSLLR 155 (321)
T ss_dssp ESS-EEEEEEE--TTEEEEEETTEEEEEEEETTSSEEEE------EEE-BSSSEEEEEEE--T-TEEEEEESSSSEEEEE
T ss_pred ecCcceEhhhh--CCEEEEeecCEEEEEEccCcccchhh------heecceEEEEEEecc--c-cEEEEEEcccCEEEEE
Confidence 34778888755 44577777799999999866522221 112223356666655 4 6888999988888886
Q ss_pred cCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEcc
Q 010256 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDIN 370 (514)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~ 370 (514)
.+..... +..+... .....++++.|-++++.+++++. |.+.++...
T Consensus 156 ~~~~~~~---l~~va~d----------~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 156 YDEENNK---LILVARD----------YQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EETTTE----EEEEEEE----------SS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEccCCE---EEEEEec----------CCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 5441110 1111110 01246888999877777777776 999999886
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.091 Score=46.15 Aligned_cols=144 Identities=12% Similarity=0.101 Sum_probs=88.1
Q ss_pred ceeEEEEecCCCEEEEEe--C--CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeC
Q 010256 343 SISDIKFARNGRHILSRD--Y--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 418 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~~~--~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 418 (514)
.+.+.+++++++.++.-. + ..+.++... +.....+.+.. +....|++++...+....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g~~-----------------l~~PS~d~~g~~W~v~~~ 85 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTGGS-----------------LTRPSWDPDGWVWTVDDG 85 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccCCc-----------------cccccccCCCCEEEEEcC
Confidence 588899999999887743 3 555555543 22222222221 226789999888777776
Q ss_pred CCcEEEEe-cCCCceeeeeecCC--CcceeEEEECCCCCceeecC---CCCeEEE----eeCCC-CCccccCCc--cc-c
Q 010256 419 SNLFRVFG-CSEGSAESTTLEAS--KNPMRRQVQTPSRPSRPLGS---LSGVVRR----VKGAD-NSALDANGN--AF-D 484 (514)
Q Consensus 419 dg~i~iwd-~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~s---~d~~v~i----~~~~~-~~~~~~~~~--~~-~ 484 (514)
+...+++. ..++......+... ...|.++.++|||..+|... .++.|.+ .++.. +. .+... .. .
T Consensus 86 ~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~--~l~~~~~~~~~ 163 (253)
T PF10647_consen 86 SGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPR--RLTGPRRVAPP 163 (253)
T ss_pred CCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcc--eeccceEeccc
Confidence 77777774 33333322233322 12899999999999776665 3577777 22222 11 11111 11 2
Q ss_pred cccceEEEEEcCCCCEEEEEecC
Q 010256 485 FSMKLLHLAWHPSENSIACAASN 507 (514)
Q Consensus 485 ~~~~v~~~~~spd~~~l~~~~~~ 507 (514)
....++.++|.+++.+++.+...
T Consensus 164 ~~~~v~~v~W~~~~~L~V~~~~~ 186 (253)
T PF10647_consen 164 LLSDVTDVAWSDDSTLVVLGRSA 186 (253)
T ss_pred ccCcceeeeecCCCEEEEEeCCC
Confidence 35688999999999988876633
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.34 Score=43.64 Aligned_cols=99 Identities=11% Similarity=0.160 Sum_probs=60.8
Q ss_pred ccceeEEEEecCCCEEEEEeC--CeEEEEEccC-CCCce-----eeeeeccccccccccccccCCccceeeEEEcCCCCE
Q 010256 341 IASISDIKFARNGRHILSRDY--MTLKLWDINM-DSGPV-----ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR 412 (514)
Q Consensus 341 ~~~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 412 (514)
-..-+.++||||++.|+..+. +.|.-|++.. .+..- ..+....+... .++...+|.+
T Consensus 162 ~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PD---------------G~~vDadG~l 226 (307)
T COG3386 162 LTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPD---------------GMAVDADGNL 226 (307)
T ss_pred EEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCC---------------ceEEeCCCCE
Confidence 345678999999998888754 7888877752 01111 11111111111 5788889998
Q ss_pred EEEEeCCC-cEEEEecCCCceeeeeecCCCcceeEEEEC-CCCCce
Q 010256 413 VATGSYSN-LFRVFGCSEGSAESTTLEASKNPMRRQVQT-PSRPSR 456 (514)
Q Consensus 413 l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l 456 (514)
.+++-.+| .|.+|+.. + ++...+.-....+..++|- ++.+.|
T Consensus 227 w~~a~~~g~~v~~~~pd-G-~l~~~i~lP~~~~t~~~FgG~~~~~L 270 (307)
T COG3386 227 WVAAVWGGGRVVRFNPD-G-KLLGEIKLPVKRPTNPAFGGPDLNTL 270 (307)
T ss_pred EEecccCCceEEEECCC-C-cEEEEEECCCCCCccceEeCCCcCEE
Confidence 86555554 99999998 5 4445555554666777774 444433
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.042 Score=51.20 Aligned_cols=100 Identities=16% Similarity=0.187 Sum_probs=68.2
Q ss_pred Ee-cCCeEEEEeccCCCce-eeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceec
Q 010256 250 SA-DDLRINLWNLEISNQS-FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 327 (514)
Q Consensus 250 s~-~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 327 (514)
.| ++..|.-||++-.... +..... .-........|.+-..+| ++++|+.+|.||+||- .+...
T Consensus 399 vGLs~n~vfriDpRv~~~~kl~~~q~---kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~A--------- 463 (644)
T KOG2395|consen 399 VGLSDNSVFRIDPRVQGKNKLAVVQS---KQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRA--------- 463 (644)
T ss_pred EeecCCceEEecccccCcceeeeeec---cccccccccceeeecCCc--eEEEeecCCcEEeehh-hhhhh---------
Confidence 46 8888999998854431 111100 111123445677777776 8999999999999996 44332
Q ss_pred cCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEcc
Q 010256 328 QEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDIN 370 (514)
Q Consensus 328 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~ 370 (514)
...+++...+|..|..+.+|++|++..+..+.+.++.
T Consensus 464 ------KTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 464 ------KTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred ------hhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 1224556679999999999999998777777777764
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0043 Score=35.42 Aligned_cols=28 Identities=21% Similarity=0.531 Sum_probs=24.1
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEE
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWK 142 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~ 142 (514)
..|.++.|. +++.++++++.|+.+++|+
T Consensus 13 ~~i~~~~~~--~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 13 GPVTSVAFS--PDGKYLASASDDGTIKLWD 40 (40)
T ss_pred CceeEEEEC--CCCCEEEEecCCCeEEEcC
Confidence 789999995 4456899999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.25 Score=42.60 Aligned_cols=142 Identities=13% Similarity=0.045 Sum_probs=88.3
Q ss_pred eeEEEEecCCCE-EEEEeC-C-eEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCC-
Q 010256 344 ISDIKFARNGRH-ILSRDY-M-TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS- 419 (514)
Q Consensus 344 i~~~~~s~~g~~-l~~~~~-~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d- 419 (514)
-..++|+|.... ++.+.. | -..++|... .+...++...+.. .+|. -=.|||||++|...-.|
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~-~~~pv~~~s~~~R-----HfyG--------HGvfs~dG~~LYATEndf 135 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNG-AQEPVTLVSQEGR-----HFYG--------HGVFSPDGRLLYATENDF 135 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCC-CcCcEEEecccCc-----eeec--------ccccCCCCcEEEeecCCC
Confidence 345778875443 333433 4 457888886 5555555433321 1111 23699999999876544
Q ss_pred ----CcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE-----------------------eeCCC
Q 010256 420 ----NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR-----------------------VKGAD 472 (514)
Q Consensus 420 ----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i-----------------------~~~~~ 472 (514)
|.|-|||...+-.....+..|.-....+.+.+||+.++.+. |.|+. ..|..
T Consensus 136 d~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~l 213 (366)
T COG3490 136 DPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNL 213 (366)
T ss_pred CCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccch
Confidence 78999999876566677788877778999999999988773 33333 11111
Q ss_pred CCccccCCcccccccceEEEEEcCCCCEEEE
Q 010256 473 NSALDANGNAFDFSMKLLHLAWHPSENSIAC 503 (514)
Q Consensus 473 ~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~ 503 (514)
+.+.++. ...+.-.|++++..+||+..+.
T Consensus 214 iekh~Lp--~~l~~lSiRHld~g~dgtvwfg 242 (366)
T COG3490 214 IEKHTLP--ASLRQLSIRHLDIGRDGTVWFG 242 (366)
T ss_pred hhhccCc--hhhhhcceeeeeeCCCCcEEEE
Confidence 1111111 0124567889999999987653
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.2 Score=49.75 Aligned_cols=202 Identities=14% Similarity=0.143 Sum_probs=101.2
Q ss_pred cCeEEEEECCCCCEEEEe-c------CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC-C
Q 010256 234 YHINSISNNSDGETFISA-D------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-G 305 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~-~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d-g 305 (514)
..+.+.+++|+|+.++.. . |..-.||-...++....+ .. ....+.-.|+|+| ..+++.... .
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~l-------t~--g~~~t~PsWspDG-~~lw~v~dg~~ 419 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQV-------LE--GHSLTRPSWSLDA-DAVWVVVDGNT 419 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceee-------ec--CCCCCCceECCCC-CceEEEecCcc
Confidence 467789999999988764 2 433344433222222211 11 2237788999998 666665433 2
Q ss_pred eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccC--CCCceeeeeecc
Q 010256 306 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINM--DSGPVATFQVHE 383 (514)
Q Consensus 306 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~--~~~~~~~~~~~~ 383 (514)
.+++.+-..... +......... ... ...+.|..+.|||||..++.-.++.|.+=-+.. .+. ..+....
T Consensus 420 ~~~v~~~~~~gq----l~~~~vd~ge-~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~--~~l~~~~ 489 (591)
T PRK13616 420 VVRVIRDPATGQ----LARTPVDASA-VAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ--YALTNPR 489 (591)
T ss_pred eEEEeccCCCce----EEEEeccCch-hhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc--eeecccE
Confidence 223322211100 1111110000 000 122579999999999999886667777633221 132 2221100
Q ss_pred ccccccccccccCCccc-eeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecC--CCcceeEEEECCCCCceeecC
Q 010256 384 HLRPKLCDLYENDSIFD-KFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA--SKNPMRRQVQTPSRPSRPLGS 460 (514)
Q Consensus 384 ~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~s 460 (514)
.... ...+ +.++.|..++.++ .+..++.-.+|.+.-.......+.. ...++.+++-+++ .+....
T Consensus 490 ~l~~---------~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~ 557 (591)
T PRK13616 490 EVGP---------GLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTD 557 (591)
T ss_pred Eeec---------ccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEc
Confidence 0000 0001 2378999999865 4454554555655433232222232 2556667777764 344556
Q ss_pred CCCeEEE
Q 010256 461 LSGVVRR 467 (514)
Q Consensus 461 ~d~~v~i 467 (514)
.++.+++
T Consensus 558 ~~g~~~l 564 (591)
T PRK13616 558 ARAVLQL 564 (591)
T ss_pred CCceEEe
Confidence 6777776
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0067 Score=36.64 Aligned_cols=31 Identities=19% Similarity=0.644 Sum_probs=26.8
Q ss_pred ccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcC
Q 010256 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQ 144 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~ 144 (514)
...|..+.|+|..| ++|.++.+|.|.++.+.
T Consensus 11 ~~~v~~~~w~P~md--LiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD--LIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCC--EEEEEECCCeEEEEECC
Confidence 36799999977655 99999999999999983
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.011 Score=59.54 Aligned_cols=102 Identities=13% Similarity=0.190 Sum_probs=73.4
Q ss_pred cEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE-eCCeEEEEEccCCCC
Q 010256 296 NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSG 374 (514)
Q Consensus 296 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~iwd~~~~~~ 374 (514)
..++.|+..|.+...|+...-.. . .... .-.++|++++|+.+|+.++.| .+|-|.+||+.. ++
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~---~-~~ne-----------~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~k 163 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGP---L-HQNE-----------RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-AK 163 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccch---h-hcCC-----------ccCCcceeeEecCCCceeccccCCCcEEEEEccC-Cc
Confidence 57899999999999998764210 0 0000 012689999999999999998 459999999997 88
Q ss_pred ceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEec
Q 010256 375 PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (514)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 427 (514)
+++.+..+..+.. .+..+.+..++..+.++...|. +|.+
T Consensus 164 ~l~~i~e~~ap~t------------~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 164 ILKVITEHGAPVT------------GVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ceeeeeecCCccc------------eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 8888887776542 2335666666777777777776 5554
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.45 Score=41.40 Aligned_cols=219 Identities=11% Similarity=0.139 Sum_probs=118.5
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
..|.++.|+ ++.+.|++......-.+|=-.+|++.....+.+-
T Consensus 86 ~nvS~LTyn--p~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~----------------------------------- 128 (316)
T COG3204 86 ANVSSLTYN--PDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF----------------------------------- 128 (316)
T ss_pred ccccceeeC--CCcceEEEecCCCceEEEEecCCceEEEeccccc-----------------------------------
Confidence 569999995 4555888888777777777777776665554421
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
...-.|++..++++.++- .++.+.++.+..........
T Consensus 129 -----------------------------------------~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~ 167 (316)
T COG3204 129 -----------------------------------------SDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAK 167 (316)
T ss_pred -----------------------------------------CChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEecc
Confidence 112234455555555555 66777766665443222211
Q ss_pred c--cCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 272 D--VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 272 ~--~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
. ++.......+...-.++|.|.. ..|..+-+..-+.||....+.. .+..+....+.....-.-..+.++.|
T Consensus 168 ~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~------~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 168 VQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPS------SLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCc------ccccccccCcccccceEeecccccee
Confidence 1 1111122225567889999998 6777777877888887764331 11111111001000111246788889
Q ss_pred ecCC-CEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEE
Q 010256 350 ARNG-RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 425 (514)
Q Consensus 350 s~~g-~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 425 (514)
++.. .+++-+.. +.+.-.|.. +.++..+..+.+...-..++.. ...++..++|.+.++ |.-+..+.+
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~--G~~~~~lsL~~g~~gL~~dipq------aEGiamDd~g~lYIv-SEPnlfy~F 309 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLS--GEVIELLSLTKGNHGLSSDIPQ------AEGIAMDDDGNLYIV-SEPNLFYRF 309 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecC--CCeeeeEEeccCCCCCcccCCC------cceeEECCCCCEEEE-ecCCcceec
Confidence 8754 44444544 777777766 6666666555443221111111 115777777765544 333444433
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.6 Score=41.83 Aligned_cols=152 Identities=14% Similarity=0.153 Sum_probs=80.7
Q ss_pred CCCcEEEEeeCCCeEEEEEcC-ccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCC
Q 010256 124 ANSALYLLSTNDKTIKLWKVQ-EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPG 202 (514)
Q Consensus 124 ~~~~~l~s~~~d~~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 202 (514)
..++.|+.|+.+| +.++++. ........... .|. .+...++-+.+ ++-
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~----------~I~-------ql~vl~~~~~l------------lvL- 53 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLS----------SIT-------QLSVLPELNLL------------LVL- 53 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeecc----------eEE-------EEEEecccCEE------------EEE-
Confidence 3456899999998 8888882 22222222211 122 55555555544 222
Q ss_pred CCCcEEeceeeccccccccccc----cc---cccccCccCeEEEE---ECCCCCEEEEecCCeEEEEeccCCCcee--ee
Q 010256 203 GVSSLRLPVVVTSQETNLVAGC----RR---IYAHAHDYHINSIS---NNSDGETFISADDLRINLWNLEISNQSF--NI 270 (514)
Q Consensus 203 ~~~~i~i~~~~~~~~~~~~~~~----~~---~~~~~h~~~v~~~~---~~~~~~~l~s~~d~~i~iwd~~~~~~~~--~~ 270 (514)
.|+.+.+++ +........... .. .........+...+ -......|+.+...+|.+|......... ..
T Consensus 54 sd~~l~~~~-L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ 132 (275)
T PF00780_consen 54 SDGQLYVYD-LDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLL 132 (275)
T ss_pred cCCccEEEE-chhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccccee
Confidence 348888888 444333221110 00 00012223444444 2223455666666699999887532211 11
Q ss_pred eccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcc
Q 010256 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL 317 (514)
Q Consensus 271 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~ 317 (514)
. .+ .....+.+++|.+ +.++.|..+ ...+.|+.++..
T Consensus 133 k-----e~-~lp~~~~~i~~~~---~~i~v~~~~-~f~~idl~~~~~ 169 (275)
T PF00780_consen 133 K-----EI-SLPDPPSSIAFLG---NKICVGTSK-GFYLIDLNTGSP 169 (275)
T ss_pred E-----EE-EcCCCcEEEEEeC---CEEEEEeCC-ceEEEecCCCCc
Confidence 0 11 1357789999984 456666654 577889987653
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.23 Score=36.33 Aligned_cols=67 Identities=16% Similarity=0.155 Sum_probs=43.6
Q ss_pred eEEEEE---ecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC
Q 010256 285 ITSAEF---HPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY 361 (514)
Q Consensus 285 i~~v~~---~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 361 (514)
|+++++ ..+|.+.|++|+.|..||+|+-.. . +..+... +.|+++.-...+++.++-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~----~~Ei~e~-------------~~v~~L~~~~~~~F~Y~l~N 62 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--I----VAEITET-------------DKVTSLCSLGGGRFAYALAN 62 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--E----EEEEecc-------------cceEEEEEcCCCEEEEEecC
Confidence 445544 456668899999999999998543 2 1222221 46888877777665555455
Q ss_pred CeEEEEEcc
Q 010256 362 MTLKLWDIN 370 (514)
Q Consensus 362 ~~i~iwd~~ 370 (514)
|+|-+|+-.
T Consensus 63 GTVGvY~~~ 71 (111)
T PF14783_consen 63 GTVGVYDRS 71 (111)
T ss_pred CEEEEEeCc
Confidence 888887653
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=96.34 E-value=1.2 Score=43.71 Aligned_cols=28 Identities=14% Similarity=0.026 Sum_probs=22.3
Q ss_pred cEEEEeeCCCeEEEEEcCccEEEEEeec
Q 010256 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDW 154 (514)
Q Consensus 127 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~ 154 (514)
..++.++.++.|.-+|.++|+..-....
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 4788888899999999999987655443
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.10 E-value=1.1 Score=41.19 Aligned_cols=58 Identities=12% Similarity=0.032 Sum_probs=37.6
Q ss_pred CCCEEEEEeCCCcEEEEecCCCceee---eeecCCCcceeEEEECCCCCceeecCCCCeEE
Q 010256 409 DGGRVATGSYSNLFRVFGCSEGSAES---TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVR 466 (514)
Q Consensus 409 ~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~ 466 (514)
.|.++++.-..+.|...+++.+.... ..+.....++..+++.|||.++++-+.+|.|.
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 34566655556788888876553321 22334455889999999999988887777764
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.05 E-value=1.5 Score=42.12 Aligned_cols=194 Identities=12% Similarity=0.076 Sum_probs=97.4
Q ss_pred eEEEEECCCCCEEEEe-c-C----CeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCC----
Q 010256 236 INSISNNSDGETFISA-D-D----LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---- 305 (514)
Q Consensus 236 v~~~~~~~~~~~l~s~-~-d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg---- 305 (514)
+...+++|++++++.+ + . ..++++|+++++..... +. ......+.|.+++ ..|+....+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-------i~--~~~~~~~~W~~d~-~~~~y~~~~~~~~~ 195 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-------IE--NPKFSSVSWSDDG-KGFFYTRFDEDQRT 195 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-------EE--EEESEEEEECTTS-SEEEEEECSTTTSS
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-------cc--ccccceEEEeCCC-CEEEEEEeCccccc
Confidence 4467899999999875 2 3 45999999977543221 11 1112349999998 4554444322
Q ss_pred -------eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE--e--C-CeEEEEEccCC-
Q 010256 306 -------SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR--D--Y-MTLKLWDINMD- 372 (514)
Q Consensus 306 -------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~--~--~-~~i~iwd~~~~- 372 (514)
.|+.|.+.+...-. ...|+....+ .....+..++|+++|+.. + . ..+.+.|+...
T Consensus 196 ~~~~~~~~v~~~~~gt~~~~d--~lvfe~~~~~----------~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~ 263 (414)
T PF02897_consen 196 SDSGYPRQVYRHKLGTPQSED--ELVFEEPDEP----------FWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG 263 (414)
T ss_dssp -CCGCCEEEEEEETTS-GGG---EEEEC-TTCT----------TSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT
T ss_pred ccCCCCcEEEEEECCCChHhC--eeEEeecCCC----------cEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC
Confidence 36777776544211 2333333211 125678899999998863 2 2 45777777752
Q ss_pred --CCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe---CCCcEEEEecCCCce--eeeeecCCCcc--
Q 010256 373 --SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS---YSNLFRVFGCSEGSA--ESTTLEASKNP-- 443 (514)
Q Consensus 373 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~---~dg~i~iwd~~~~~~--~~~~~~~~~~~-- 443 (514)
......+....... ....-+..+.+++... ..+.|.-.++..... ....+..+...
T Consensus 264 ~~~~~~~~l~~~~~~~---------------~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~ 328 (414)
T PF02897_consen 264 SPDAKPKLLSPREDGV---------------EYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVS 328 (414)
T ss_dssp TSS-SEEEEEESSSS----------------EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEE
T ss_pred CCcCCcEEEeCCCCce---------------EEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCcee
Confidence 12333333222111 0122222444444332 335677777776542 11245555543
Q ss_pred eeEEEECCCCCceeecCCCCeEEE
Q 010256 444 MRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 444 v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+..+... .+.+++....++.-+|
T Consensus 329 l~~~~~~-~~~Lvl~~~~~~~~~l 351 (414)
T PF02897_consen 329 LEDVSLF-KDYLVLSYRENGSSRL 351 (414)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEE
T ss_pred EEEEEEE-CCEEEEEEEECCccEE
Confidence 3333332 2234555556666555
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.3 Score=48.15 Aligned_cols=109 Identities=13% Similarity=0.074 Sum_probs=67.7
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEE--CCCCCceeecCCCCeEEEeeCC-------CCC
Q 010256 404 CCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQ--TPSRPSRPLGSLSGVVRRVKGA-------DNS 474 (514)
Q Consensus 404 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~s~s~d~~v~i~~~~-------~~~ 474 (514)
+.-|.-++.-++-+....+.|||...+..+....-...+.|..+.| .|+++.+++.+....|.++... .+.
T Consensus 35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~ 114 (631)
T PF12234_consen 35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPS 114 (631)
T ss_pred EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcc
Confidence 3334444544444445579999998774332222244678888877 5899999999999999992211 111
Q ss_pred ccccC-Ccccccc-cceEEEEEcCCCCEEEEEecCcEEEEe
Q 010256 475 ALDAN-GNAFDFS-MKLLHLAWHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 475 ~~~~~-~~~~~~~-~~v~~~~~spd~~~l~~~~~~~~~i~~ 513 (514)
-..+. ....+++ ..|.+..|.++|. |++|+.++++||.
T Consensus 115 w~~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~sGNqlfv~d 154 (631)
T PF12234_consen 115 WAPIRKIDISSHTPHPIGDSIWLKDGT-LVVGSGNQLFVFD 154 (631)
T ss_pred cceeEEEEeecCCCCCccceeEecCCe-EEEEeCCEEEEEC
Confidence 00000 1112333 6788999999998 5566788888874
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.71 E-value=2.1 Score=41.12 Aligned_cols=34 Identities=18% Similarity=0.321 Sum_probs=25.9
Q ss_pred cceEEEEEcCCCCeEEEe-cCCC----eEEEEEecCCcc
Q 010256 36 DIISAIEFDKSGDHLATG-DRGG----RVVLFERTDTRD 69 (514)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg-~~dg----~i~iw~~~~~~~ 69 (514)
..+...++||||++||.+ +..| .|+++|+.+++.
T Consensus 124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~ 162 (414)
T PF02897_consen 124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF 162 (414)
T ss_dssp EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE
T ss_pred EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC
Confidence 455578999999999865 3333 599999988864
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=95.65 E-value=1.4 Score=38.75 Aligned_cols=155 Identities=12% Similarity=0.126 Sum_probs=86.4
Q ss_pred CeEEEEECCCCCEEEEec--CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEE-
Q 010256 235 HINSISNNSDGETFISAD--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID- 311 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd- 311 (514)
.+.+.+++++++.++... ++.-.+|-.......... + ....+....|++++ .+.+....+...+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~-------~--~g~~l~~PS~d~~g-~~W~v~~~~~~~~~~~~ 94 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV-------L--TGGSLTRPSWDPDG-WVWTVDDGSGGVRVVRD 94 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee-------c--cCCccccccccCCC-CEEEEEcCCCceEEEEe
Confidence 578899999999877642 444444444433333211 1 23367788999997 6666666666666663
Q ss_pred cCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe----CCeEEEEEccCCCCc-eeeeeeccccc
Q 010256 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----YMTLKLWDINMDSGP-VATFQVHEHLR 386 (514)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~----~~~i~iwd~~~~~~~-~~~~~~~~~~~ 386 (514)
...+... ....+... ....|.++.+||||..++.-. ++.|.+=-+.....- ...+.......
T Consensus 95 ~~~g~~~---~~~v~~~~----------~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~ 161 (253)
T PF10647_consen 95 SASGTGE---PVEVDWPG----------LRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVA 161 (253)
T ss_pred cCCCcce---eEEecccc----------cCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEec
Confidence 3333321 01111110 012799999999999888632 477877766532221 11111111000
Q ss_pred cccccccccCCccceeeEEEcCCCCEEEEEeCCC
Q 010256 387 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 420 (514)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 420 (514)
. .....+.+++|.+++.+++.+...+
T Consensus 162 ~--------~~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 162 P--------PLLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred c--------cccCcceeeeecCCCEEEEEeCCCC
Confidence 0 0111345899999999877665433
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.64 E-value=2 Score=40.50 Aligned_cols=158 Identities=11% Similarity=0.110 Sum_probs=101.5
Q ss_pred CeEEEEECCCCCEEEEe-c---CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEE
Q 010256 235 HINSISNNSDGETFISA-D---DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 310 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~w 310 (514)
....++++++++.+..+ . ++++.+.|..+....... .....+ ..++++|+|...+++-..++.|.+.
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~--------~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi 187 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATI--------PVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVI 187 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEE--------ecCCCc-ceEEECCCCCeEEEEecCCCeEEEE
Confidence 55689999999888876 3 588888888766544331 111123 8899999994355555578999999
Q ss_pred EcCCCcccc-ccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC----CeEEEEEccCCCCceee-eeeccc
Q 010256 311 DMRQSALCD-THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY----MTLKLWDINMDSGPVAT-FQVHEH 384 (514)
Q Consensus 311 d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~----~~i~iwd~~~~~~~~~~-~~~~~~ 384 (514)
|........ ........ ......+.++|+|.++....+ +.+...|... +..... ......
T Consensus 188 ~~~~~~v~~~~~~~~~~~-------------~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~-~~v~~~~~~~~~~ 253 (381)
T COG3391 188 DTSGNSVVRGSVGSLVGV-------------GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT-GNVTATDLPVGSG 253 (381)
T ss_pred eCCCcceecccccccccc-------------CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC-ceEEEeccccccC
Confidence 977654421 00001111 123567899999998877533 4788888775 433332 221111
Q ss_pred cccccccccccCCccceeeEEEcCCCCEEEEEe-CCCcEEEEecCCC
Q 010256 385 LRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEG 430 (514)
Q Consensus 385 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~ 430 (514)
. -..+.++|+|+++.... ..+.+.+.|..+.
T Consensus 254 ~---------------~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 254 A---------------PRGVAVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred C---------------CCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 0 11688999999988774 4488999998765
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.51 Score=46.63 Aligned_cols=114 Identities=11% Similarity=0.145 Sum_probs=69.7
Q ss_pred EEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEe--cCCCcEEEEEecCCeEEEEEcCC
Q 010256 238 SISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH--PTHCNMLAYSSSKGSIRLIDMRQ 314 (514)
Q Consensus 238 ~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~--p~~~~~l~~~~~dg~i~~wd~~~ 314 (514)
-+.-+.-++.-++- +..++.|||.+.+....+. .+ ...+.|..+.|. |++ +.+++.+..+.|.+|.-..
T Consensus 34 li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~------~f-~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q~R 105 (631)
T PF12234_consen 34 LISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEE------SF-SEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQLR 105 (631)
T ss_pred eEeecccCcEEEEECCCCEEEEEEcCCcEEEEee------ee-cCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEccc
Confidence 33344444444444 6778999999866543321 23 346789999985 677 6777788888998885421
Q ss_pred -----CccccccccceeccCCCCccceeeccc-cceeEEEEecCCCEEEEEeCCeEEEEEcc
Q 010256 315 -----SALCDTHSKLFEEQEAPGTRSFFTEII-ASISDIKFARNGRHILSRDYMTLKLWDIN 370 (514)
Q Consensus 315 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~~g~~l~~~~~~~i~iwd~~ 370 (514)
.......++.++ +..|+ .+|.+..|.++|.++++. ...+.|+|-.
T Consensus 106 ~dy~~~~p~w~~i~~i~----------i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 106 YDYTNKGPSWAPIRKID----------ISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDKW 156 (631)
T ss_pred hhhhcCCcccceeEEEE----------eecCCCCCccceeEecCCeEEEEe-CCEEEEECCC
Confidence 111111222222 22233 479999999998766654 4578888754
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.56 E-value=2.4 Score=40.87 Aligned_cols=156 Identities=12% Similarity=0.144 Sum_probs=78.1
Q ss_pred cceeEEEEeeCC--CCcEEEEeeCCCeEEEEEcCc-----cEEEEEeeccCCCccccCCcceecccccCCceeeccCCCc
Q 010256 113 EKINKIRWCQSA--NSALYLLSTNDKTIKLWKVQE-----KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (514)
Q Consensus 113 ~~v~~i~~~~~~--~~~~l~s~~~d~~i~iw~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 185 (514)
+.|..+.|.|-. +-..+++....+.|.+|.+.- ++.......+..+.. ..-+....|.|....
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~----------pvLpQGCVWHPk~~i 126 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPF----------PVLPQGCVWHPKKAI 126 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCc----------ccCCCcccccCCCce
Confidence 569999998732 222566777789999998762 222211111111100 011226678888877
Q ss_pred cccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCeEEEEeccC
Q 010256 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEI 263 (514)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~ 263 (514)
+.++.......+.-.-.++..++ . --.-.+.|.|.+|.+||+.|+.+ +.=.-++||-..
T Consensus 127 L~VLT~~dvSV~~sV~~d~srVk------------------a-Di~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 127 LTVLTARDVSVLPSVHCDSSRVK------------------A-DIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EEEEecCceeEeeeeeeCCceEE------------------E-eccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 73322211111111111111111 0 01334789999999999999988 444556787542
Q ss_pred CCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEec
Q 010256 264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS 303 (514)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~ 303 (514)
+ ......+. ....-.+.|.++.-.-+. .+|.+.+
T Consensus 188 -K-tL~~Csfc--PVFdv~~~Icsi~AT~ds--qVAvaTE 221 (671)
T PF15390_consen 188 -K-TLHRCSFC--PVFDVGGYICSIEATVDS--QVAVATE 221 (671)
T ss_pred -h-hhhhCCcc--eeecCCCceEEEEEeccc--eEEEEec
Confidence 2 21111111 112234566666655543 5555544
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.55 E-value=1.2 Score=37.34 Aligned_cols=135 Identities=10% Similarity=0.083 Sum_probs=77.0
Q ss_pred ccCeEEEEECCCCCEEEEe-c---------CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEe
Q 010256 233 DYHINSISNNSDGETFISA-D---------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS 302 (514)
Q Consensus 233 ~~~v~~~~~~~~~~~l~s~-~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~ 302 (514)
..+.++-..+|+|++++-- . .|.++.|-.. .+.-.+ ...-.--..++|+.+...+.++-+
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i--------~~~v~IsNgl~Wd~d~K~fY~iDs 177 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELI--------WNCVGISNGLAWDSDAKKFYYIDS 177 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceee--------ehhccCCccccccccCcEEEEEcc
Confidence 4556677789999996543 2 2455555543 111111 111223357889888755666677
Q ss_pred cCCeEEEEE--cCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeee
Q 010256 303 SKGSIRLID--MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATF 379 (514)
Q Consensus 303 ~dg~i~~wd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~ 379 (514)
.+-.|.-|| ..+|....+ ...++..... .+. + -..-.+++..+|.+.++.- .++|...|..+ ++.+.++
T Consensus 178 ln~~V~a~dyd~~tG~~snr-~~i~dlrk~~----~~e-~-~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~t-GK~L~ei 249 (310)
T KOG4499|consen 178 LNYEVDAYDYDCPTGDLSNR-KVIFDLRKSQ----PFE-S-LEPDGMTIDTEGNLYVATFNGGTVQKVDPTT-GKILLEI 249 (310)
T ss_pred CceEEeeeecCCCcccccCc-ceeEEeccCC----CcC-C-CCCCcceEccCCcEEEEEecCcEEEEECCCC-CcEEEEE
Confidence 788887787 566654321 1122221100 000 0 0122344456787777764 48999999998 9999988
Q ss_pred eecccc
Q 010256 380 QVHEHL 385 (514)
Q Consensus 380 ~~~~~~ 385 (514)
......
T Consensus 250 klPt~q 255 (310)
T KOG4499|consen 250 KLPTPQ 255 (310)
T ss_pred EcCCCc
Confidence 876543
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.36 Score=49.45 Aligned_cols=105 Identities=15% Similarity=0.261 Sum_probs=68.1
Q ss_pred CCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccc
Q 010256 244 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS 322 (514)
Q Consensus 244 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 322 (514)
.+..++.| +.|.+-..|+...-... ..-....++|++++|+.+| .+++.|-.+|.|.+||+..++. .
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~-------~~ne~v~~~Vtsvafn~dg-~~l~~G~~~G~V~v~D~~~~k~----l 165 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPL-------HQNERVQGPVTSVAFNQDG-SLLLAGLGDGHVTVWDMHRAKI----L 165 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchh-------hcCCccCCcceeeEecCCC-ceeccccCCCcEEEEEccCCcc----e
Confidence 45567778 88888888887421110 0123347889999999999 8999999999999999998776 3
Q ss_pred cceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccC
Q 010256 323 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINM 371 (514)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~ 371 (514)
+.+..+..| + ..+-.+.+..++..+++++. |. +|.+..
T Consensus 166 ~~i~e~~ap--------~-t~vi~v~~t~~nS~llt~D~~Gs--f~~lv~ 204 (1206)
T KOG2079|consen 166 KVITEHGAP--------V-TGVIFVGRTSQNSKLLTSDTGGS--FWKLVF 204 (1206)
T ss_pred eeeeecCCc--------c-ceEEEEEEeCCCcEEEEccCCCc--eEEEEe
Confidence 333333211 1 12333444455666667655 54 676654
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=95.18 E-value=2.3 Score=38.26 Aligned_cols=237 Identities=13% Similarity=0.095 Sum_probs=108.3
Q ss_pred ccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccc-cCCceEEEEEecCCCcEEEEEecCCeEEEEE
Q 010256 233 DYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (514)
Q Consensus 233 ~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd 311 (514)
...+.+|.|..+..-+++|..+.| +....+......... .... ......+|.|..+ ..+++| ..+. .+.-
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~~g~i--l~T~DGG~tW~~~~~---~~~~~~~~~l~~I~f~~~--~g~ivG-~~g~-ll~T 86 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGAYGTI--LKTTDGGKTWQPVSL---DLDNPFDYHLNSISFDGN--EGWIVG-EPGL-LLHT 86 (302)
T ss_dssp SS-EEEEEESSSS-EEEEETTTEE--EEESSTTSS-EE--------S-----EEEEEEEETT--EEEEEE-ETTE-EEEE
T ss_pred CCceEEEEEecCCEEEEEecCCEE--EEECCCCcccccccc---CCCccceeeEEEEEecCC--ceEEEc-CCce-EEEe
Confidence 357889999977777888876754 444444443332111 0111 1234677888654 455544 4443 2333
Q ss_pred cCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeecccccccccc
Q 010256 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCD 391 (514)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 391 (514)
...++. .+.+. +. .. +. +....+....++..++++..|. ||.....++.-..+.....
T Consensus 87 ~DgG~t-W~~v~-l~-~~-------lp---gs~~~i~~l~~~~~~l~~~~G~--iy~T~DgG~tW~~~~~~~~------- 144 (302)
T PF14870_consen 87 TDGGKT-WERVP-LS-SK-------LP---GSPFGITALGDGSAELAGDRGA--IYRTTDGGKTWQAVVSETS------- 144 (302)
T ss_dssp SSTTSS--EE------TT--------S---S-EEEEEEEETTEEEEEETT----EEEESSTTSSEEEEE-S---------
T ss_pred cCCCCC-cEEee-cC-CC-------CC---CCeeEEEEcCCCcEEEEcCCCc--EEEeCCCCCCeeEcccCCc-------
Confidence 333332 11111 00 00 00 2233344434444444444343 4444433433222221110
Q ss_pred ccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEee--
Q 010256 392 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVK-- 469 (514)
Q Consensus 392 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~-- 469 (514)
..+..+.-++||+++++++....+.-||.-..... ..-.....++..+.|.|++.+.+.+ ..|.++.-+
T Consensus 145 -------gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~-~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~ 215 (302)
T PF14870_consen 145 -------GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQ-PHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDP 215 (302)
T ss_dssp ---------EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-E-EEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-T
T ss_pred -------ceeEeEEECCCCcEEEEECcccEEEEecCCCccce-EEccCccceehhceecCCCCEEEEe-CCcEEEEccCC
Confidence 11336778899999988766555567775433232 2233456789999999998876655 788888832
Q ss_pred -CCCCCccccCCcccccccceEEEEEcCCCCEEEEEecCcEE
Q 010256 470 -GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLY 510 (514)
Q Consensus 470 -~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~ 510 (514)
....+.. ...+...-.-.+..++|.+++...|+++.+.++
T Consensus 216 ~~~~~w~~-~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~ 256 (302)
T PF14870_consen 216 DDGETWSE-PIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLL 256 (302)
T ss_dssp TEEEEE----B-TTSS--S-EEEEEESSSS-EEEEESTT-EE
T ss_pred CCcccccc-ccCCcccCceeeEEEEecCCCCEEEEeCCccEE
Confidence 1111100 001111123458999999999988888777554
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=95.17 E-value=4.9 Score=42.00 Aligned_cols=75 Identities=15% Similarity=0.119 Sum_probs=50.7
Q ss_pred cCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcC
Q 010256 234 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~ 313 (514)
+.-..+.|.++.+.|+.++...+.++|+++......+ ........|..+.-+|.....++.-+ ...|...|+.
T Consensus 204 s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l------~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~ 276 (765)
T PF10214_consen 204 SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYL------VTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVK 276 (765)
T ss_pred CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchh------ccCCChhheeeEEecCCccceEEEEe-cCeEEEEEcc
Confidence 4456788999989999998888999999865442212 12234577889988887433333333 3677777877
Q ss_pred CC
Q 010256 314 QS 315 (514)
Q Consensus 314 ~~ 315 (514)
..
T Consensus 277 ~~ 278 (765)
T PF10214_consen 277 SS 278 (765)
T ss_pred CC
Confidence 63
|
These proteins are found in fungi. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.05 E-value=1.9 Score=36.78 Aligned_cols=64 Identities=11% Similarity=0.080 Sum_probs=37.7
Q ss_pred ECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcC
Q 010256 241 NNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (514)
Q Consensus 241 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~ 313 (514)
..+++..+..| .|++.+..|.++.....+. +.......+-+..|-. .-|+.+...|.+.--...
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVyks--------kcgG~~f~sP~i~~g~-~sly~a~t~G~vlavt~~ 165 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKS--------KCGGGTFVSPVIAPGD-GSLYAAITAGAVLAVTKN 165 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEec--------ccCCceeccceecCCC-ceEEEEeccceEEEEccC
Confidence 56778888888 8999999999876655432 2223333344556622 234445555655444433
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.11 Score=30.36 Aligned_cols=33 Identities=21% Similarity=0.598 Sum_probs=27.3
Q ss_pred CceEEEEEecCCC--cEEEEEecCCeEEEEEcCCC
Q 010256 283 EVITSAEFHPTHC--NMLAYSSSKGSIRLIDMRQS 315 (514)
Q Consensus 283 ~~i~~v~~~p~~~--~~l~~~~~dg~i~~wd~~~~ 315 (514)
+.++++.|+|... .+|+.+-..|.|.++|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 3588999998763 58888888999999999963
|
It contains a characteristic DLL sequence motif. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.92 E-value=5.3 Score=41.15 Aligned_cols=103 Identities=14% Similarity=0.124 Sum_probs=58.2
Q ss_pred CCccceeeEEEcCC-CCEEEEEeC----------CCcEEEEecCCCceeeeeecCC--CcceeEEEECCCCCceeecCCC
Q 010256 396 DSIFDKFECCLSGD-GGRVATGSY----------SNLFRVFGCSEGSAESTTLEAS--KNPMRRQVQTPSRPSRPLGSLS 462 (514)
Q Consensus 396 ~~~~~v~~~~~s~~-~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~s~d 462 (514)
+....+.++.|..| +.+++.|.. .|+|.||....++.+. .+..+ .+.+.++.. -+|++||.- .
T Consensus 772 E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~-~v~e~~v~Gav~aL~~-fngkllA~I--n 847 (1096)
T KOG1897|consen 772 ETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLE-LVAETVVKGAVYALVE-FNGKLLAGI--N 847 (1096)
T ss_pred ceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCcee-eeeeeeeccceeehhh-hCCeEEEec--C
Confidence 44444557779888 667777652 4889999888733332 22221 233333322 356666554 5
Q ss_pred CeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEe
Q 010256 463 GVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 505 (514)
Q Consensus 463 ~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~ 505 (514)
..|++++..... ++. ....+...+..+...-.+..|++|.
T Consensus 848 ~~vrLye~t~~~--eLr-~e~~~~~~~~aL~l~v~gdeI~VgD 887 (1096)
T KOG1897|consen 848 QSVRLYEWTTER--ELR-IECNISNPIIALDLQVKGDEIAVGD 887 (1096)
T ss_pred cEEEEEEccccc--eeh-hhhcccCCeEEEEEEecCcEEEEee
Confidence 678873322111 111 1123466778888888888888776
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.093 Score=43.54 Aligned_cols=143 Identities=11% Similarity=0.013 Sum_probs=77.7
Q ss_pred EEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccccccee
Q 010256 247 TFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 326 (514)
Q Consensus 247 ~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 326 (514)
++++..|+.|+-++++..+...+ .-.-+... ..+ +....-+++|+.+|.|.+|........ ...+.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~r-------se~~~~e~-~~v---~~~~~~~~vG~~dg~v~~~n~n~~g~~---~d~~~ 98 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCR-------SERFIDEG-QRV---VTASAKLMVGTSDGAVYVFNWNLEGAH---SDRVC 98 (238)
T ss_pred hccccCCcccccchhhhhhhhhh-------hhhhhhcc-eee---cccCceEEeecccceEEEecCCccchH---HHhhh
Confidence 44555788888888764432211 00111111 111 222267899999999999987632111 00000
Q ss_pred ccCCCCccceeeccccceeEE-EEecCCCEEEEE-eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeE
Q 010256 327 EQEAPGTRSFFTEIIASISDI-KFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC 404 (514)
Q Consensus 327 ~~~~~~~~~~~~~~~~~i~~~-~~s~~g~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 404 (514)
. ....|-+. .--.++.+..++ .++.|+.|++.. .+.+...-.|.... ....
T Consensus 99 s------------~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p-~k~~g~~g~h~~~~--------------~e~~ 151 (238)
T KOG2444|consen 99 S------------GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP-NKVLGYVGQHNFES--------------GEEL 151 (238)
T ss_pred c------------ccccceeccccccccceeEEeccCCceeeecccc-CceeeeeccccCCC--------------ccee
Confidence 0 00122222 222233345554 569999999985 77666666555211 1144
Q ss_pred EEcCCCCEEEEE--eCCCcEEEEecCCC
Q 010256 405 CLSGDGGRVATG--SYSNLFRVFGCSEG 430 (514)
Q Consensus 405 ~~s~~~~~l~s~--~~dg~i~iwd~~~~ 430 (514)
..+..+++|+.+ |.|..++.|++...
T Consensus 152 ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 152 IVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred EEecCCceEEeeccccchhhhhcchhhh
Confidence 555566777777 77888888888643
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.77 Score=46.70 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=24.4
Q ss_pred cCCccceeeEEEcCCCCEEEEEeCCCcEEEEecC
Q 010256 395 NDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 395 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 428 (514)
+...++|..+.++|+|.+|+..|..| |.|-.+.
T Consensus 81 ~~~~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP 113 (717)
T PF10168_consen 81 NPPLFEVHQISLNPTGSLLALVGPRG-VVVLELP 113 (717)
T ss_pred CCCceeEEEEEECCCCCEEEEEcCCc-EEEEEec
Confidence 34556788999999999999888755 4454443
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.66 E-value=6 Score=40.54 Aligned_cols=84 Identities=18% Similarity=0.256 Sum_probs=53.6
Q ss_pred cCeEEEEECCCCCEEEEecCCeEEEEeccCC----------Cc--eeeeeccCCCcc-cccCCceEEEEEecCC--CcEE
Q 010256 234 YHINSISNNSDGETFISADDLRINLWNLEIS----------NQ--SFNIVDVKPANM-EDLTEVITSAEFHPTH--CNML 298 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~----------~~--~~~~~~~~~~~~-~~~~~~i~~v~~~p~~--~~~l 298 (514)
..|..+.++|+|..++......|.|-.+... +. ..+.+.+...-+ ......|..+.|+|.+ ...|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 5788999999999998873344444444211 11 111121211112 2345678999999974 3688
Q ss_pred EEEecCCeEEEEEcCCCcc
Q 010256 299 AYSSSKGSIRLIDMRQSAL 317 (514)
Q Consensus 299 ~~~~~dg~i~~wd~~~~~~ 317 (514)
+.-+.|+.+|+||+.....
T Consensus 165 ~vLtsdn~lR~y~~~~~~~ 183 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQH 183 (717)
T ss_pred EEEecCCEEEEEecCCCCC
Confidence 8899999999999976443
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=94.60 E-value=2.3 Score=39.94 Aligned_cols=155 Identities=8% Similarity=-0.034 Sum_probs=76.4
Q ss_pred CceEEEEEecCCCcEEEEEe-----------cCC-eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEe
Q 010256 283 EVITSAEFHPTHCNMLAYSS-----------SKG-SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (514)
Q Consensus 283 ~~i~~v~~~p~~~~~l~~~~-----------~dg-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 350 (514)
.....|+|.++| +++++-. ..+ .|.+++-.++.-.......|. ........+++.
T Consensus 14 ~~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa------------~~l~~p~Gi~~~ 80 (367)
T TIGR02604 14 RNPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA------------EELSMVTGLAVA 80 (367)
T ss_pred CCCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee------------cCCCCccceeEe
Confidence 446789999998 6666542 223 666665443321110011221 111346789999
Q ss_pred cCCCEEEEEeCCeEEEE-EccCCCCc----eeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCC------
Q 010256 351 RNGRHILSRDYMTLKLW-DINMDSGP----VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS------ 419 (514)
Q Consensus 351 ~~g~~l~~~~~~~i~iw-d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d------ 419 (514)
++| ++++ +...|..+ |....++. ...+..-.... .+ .......++|.|||.+.++-+..
T Consensus 81 ~~G-lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~-----~~---~~~~~~~l~~gpDG~LYv~~G~~~~~~~~ 150 (367)
T TIGR02604 81 VGG-VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQI-----NN---HHHSLNSLAWGPDGWLYFNHGNTLASKVT 150 (367)
T ss_pred cCC-EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCC-----Cc---ccccccCceECCCCCEEEecccCCCceec
Confidence 998 5554 33344433 44321111 11111100000 00 00012278999999877754421
Q ss_pred -------------CcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCC
Q 010256 420 -------------NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLS 462 (514)
Q Consensus 420 -------------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d 462 (514)
|.|.-++...+. ....-.++ .....++|+++++++++-..+
T Consensus 151 ~~~~~~~~~~~~~g~i~r~~pdg~~-~e~~a~G~-rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 151 RPGTSDESRQGLGGGLFRYNPDGGK-LRVVAHGF-QNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred cCCCccCcccccCceEEEEecCCCe-EEEEecCc-CCCccceECCCCCEEEEccCC
Confidence 445555555432 22222333 334578999999887765543
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=94.54 E-value=4.1 Score=38.13 Aligned_cols=234 Identities=12% Similarity=0.104 Sum_probs=93.9
Q ss_pred CCCEEEE-e-cCCeEEEEeccCCCceeeeec-cCCCccc--ccCCceEEEEEecCCCcEEEEEe--c----CCeEEEEEc
Q 010256 244 DGETFIS-A-DDLRINLWNLEISNQSFNIVD-VKPANME--DLTEVITSAEFHPTHCNMLAYSS--S----KGSIRLIDM 312 (514)
Q Consensus 244 ~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~-~~~~~~~--~~~~~i~~v~~~p~~~~~l~~~~--~----dg~i~~wd~ 312 (514)
+.++|+. | .++.|++.|+.+.-...++.. +.+..+. ..-.....+..-|+| .+++++= . -|.+.++|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G-~imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDG-RIMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCc-cEEEEeccCCCCCCCCcEEEEcC
Confidence 3455555 5 899999999985433322211 1110111 011233455556777 6666542 2 245777777
Q ss_pred CCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE--------------------eC-CeEEEEEccC
Q 010256 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR--------------------DY-MTLKLWDINM 371 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~--------------------~~-~~i~iwd~~~ 371 (514)
++.+.. ..++..... ...-..+-+.|..+.+++. .. .++.+||+..
T Consensus 165 ~tf~v~----g~We~~~~~---------~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~ 231 (461)
T PF05694_consen 165 ETFEVK----GRWEKDRGP---------QPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWST 231 (461)
T ss_dssp TT--EE----EE--SB-TT---------------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTT
T ss_pred cccccc----ceeccCCCC---------CCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCC
Confidence 665542 223322110 1223445566655555542 12 5899999997
Q ss_pred CCCceeeeeeccccccccccccccCCccceeeEEEc--CCCCEEEE-EeCCCcEEE-EecCCCceee-eeec-------C
Q 010256 372 DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS--GDGGRVAT-GSYSNLFRV-FGCSEGSAES-TTLE-------A 439 (514)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~s-~~~dg~i~i-wd~~~~~~~~-~~~~-------~ 439 (514)
.+.++++........ ...+.|. |+..+=++ +.-..+|.. |....+.... ++.+ +
T Consensus 232 -r~~~Q~idLg~~g~~-------------pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~ 297 (461)
T PF05694_consen 232 -RKLLQTIDLGEEGQM-------------PLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG 297 (461)
T ss_dssp -TEEEEEEES-TTEEE-------------EEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred -CcEeeEEecCCCCCc-------------eEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence 888888876543210 1245554 44444332 223344444 4434443221 1111 1
Q ss_pred C------------CcceeEEEECCCCCcee-ecCCCCeEEEeeCCCCCccccCCc----------------ccccccceE
Q 010256 440 S------------KNPMRRQVQTPSRPSRP-LGSLSGVVRRVKGADNSALDANGN----------------AFDFSMKLL 490 (514)
Q Consensus 440 ~------------~~~v~~~~~~~~~~~l~-s~s~d~~v~i~~~~~~~~~~~~~~----------------~~~~~~~v~ 490 (514)
- ..-++.+.+|.|.++|. ++-..|.+|.++=..+....+.+. -....+...
T Consensus 298 ~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPq 377 (461)
T PF05694_consen 298 WILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQ 377 (461)
T ss_dssp S---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S---
T ss_pred ccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCC
Confidence 1 13368899999999875 445688898833332222111110 001234457
Q ss_pred EEEEcCCCCEEEEEe
Q 010256 491 HLAWHPSENSIACAA 505 (514)
Q Consensus 491 ~~~~spd~~~l~~~~ 505 (514)
-+..|-||+.|.+.+
T Consensus 378 MvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 378 MVQLSLDGKRLYVTN 392 (461)
T ss_dssp -EEE-TTSSEEEEE-
T ss_pred eEEEccCCeEEEEEe
Confidence 788999999988543
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=94.50 E-value=4 Score=41.08 Aligned_cols=120 Identities=15% Similarity=0.180 Sum_probs=70.6
Q ss_pred eEEEEEC--CCCCEEEEe-cCCeEEEEeccCCC-----------ceeeeeccCCCcccccCCceEEEEEe--cCCCcEEE
Q 010256 236 INSISNN--SDGETFISA-DDLRINLWNLEISN-----------QSFNIVDVKPANMEDLTEVITSAEFH--PTHCNMLA 299 (514)
Q Consensus 236 v~~~~~~--~~~~~l~s~-~d~~i~iwd~~~~~-----------~~~~~~~~~~~~~~~~~~~i~~v~~~--p~~~~~l~ 299 (514)
|+-|... -..+.|+.+ +||.|.+|.+++-- .......++|.-.......+++++++ ... ++||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~-rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKS-RLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcc-eEEE
Confidence 4444433 345677778 99999999764210 00000122332223345678999998 666 8999
Q ss_pred EEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCC-----C-EEEEEeC-CeEEEEEc
Q 010256 300 YSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-----R-HILSRDY-MTLKLWDI 369 (514)
Q Consensus 300 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-----~-~l~~~~~-~~i~iwd~ 369 (514)
+++....|.||-+...... ...-+. ..|...|.+|.|-++. . .+++++= |.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r---~~~~~s----------~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDER---FYHVPS----------HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccc---cccccc----------cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 9999999998876553211 000000 0134568899997643 2 4444443 88888887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.14 Score=29.93 Aligned_cols=29 Identities=10% Similarity=0.086 Sum_probs=24.1
Q ss_pred ceeEEEEecCC---CEEEEEeC-CeEEEEEccC
Q 010256 343 SISDIKFARNG---RHILSRDY-MTLKLWDINM 371 (514)
Q Consensus 343 ~i~~~~~s~~g---~~l~~~~~-~~i~iwd~~~ 371 (514)
.+.++.|||.. .+|+...+ +.|.|+|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 58999999844 48887777 9999999984
|
It contains a characteristic DLL sequence motif. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=94.21 E-value=6.4 Score=39.01 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=22.1
Q ss_pred cCCC--cEEEEEecCCeEEEEEcCCCccc
Q 010256 292 PTHC--NMLAYSSSKGSIRLIDMRQSALC 318 (514)
Q Consensus 292 p~~~--~~l~~~~~dg~i~~wd~~~~~~~ 318 (514)
.+|. ..++.+..+|.+.+.|.++++.+
T Consensus 310 ~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 310 KDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 4552 37889999999999999999864
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=94.05 E-value=6.7 Score=39.62 Aligned_cols=166 Identities=13% Similarity=0.107 Sum_probs=90.1
Q ss_pred CCEEEEecCCeEEEEeccCCCceee-----eeccCCCccc---------ccCCceEEEEEecCC-CcEEEEEecCCeEEE
Q 010256 245 GETFISADDLRINLWNLEISNQSFN-----IVDVKPANME---------DLTEVITSAEFHPTH-CNMLAYSSSKGSIRL 309 (514)
Q Consensus 245 ~~~l~s~~d~~i~iwd~~~~~~~~~-----~~~~~~~~~~---------~~~~~i~~v~~~p~~-~~~l~~~~~dg~i~~ 309 (514)
.++++.+..+.|.+|+++....... .+..+|.... .....|+-|....-| ...|+.+..||.|.+
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence 7788888889999999874333211 1111110000 022335555433222 258889999999999
Q ss_pred EEcCCCccccccccce----ec---cCCCCccceeeccccceeEEEEe--cCCCEEEEEeC-CeEEEEEccCCCCceeee
Q 010256 310 IDMRQSALCDTHSKLF----EE---QEAPGTRSFFTEIIASISDIKFA--RNGRHILSRDY-MTLKLWDINMDSGPVATF 379 (514)
Q Consensus 310 wd~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~i~~~~~s--~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~ 379 (514)
|.++.-... +... +. .....+ .+........++++++ ...++||+++. ..|.||-...........
T Consensus 129 Yyt~~I~~~---i~~~~~~~~~~~~r~~i~P-~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~ 204 (717)
T PF08728_consen 129 YYTETIIEA---IERFSEDNDSGFSRLKIKP-FFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHV 204 (717)
T ss_pred EEHHHHHHH---HHhhccccccccccccCCC-CeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccc
Confidence 987531100 0000 00 000000 1122233578999998 78888988877 788887765411111111
Q ss_pred eeccccccccccccccCCccceeeEEEcCCC---C---EEEEEeCCCcEEEEec
Q 010256 380 QVHEHLRPKLCDLYENDSIFDKFECCLSGDG---G---RVATGSYSNLFRVFGC 427 (514)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~---~l~s~~~dg~i~iwd~ 427 (514)
..+... .. |-+|+|-++. . .|++++-.|.+.+|++
T Consensus 205 ~s~~~~----------hN---IP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 205 PSHQHS----------HN---IPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccc----------cC---CCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 111100 11 2277776543 2 7888999999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.41 Score=49.36 Aligned_cols=152 Identities=12% Similarity=0.028 Sum_probs=90.7
Q ss_pred cCeEEEEECCCCCEEEEe---cCCeEEEEeccCCCceeeeeccCC----CcccccCCceEEEEEecCCCcEEEEEecCCe
Q 010256 234 YHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNIVDVKP----ANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 306 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~---~d~~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~ 306 (514)
.++..+...+|+...++. .+-.|..||+++-....... ..| ...........++.|+|.-+...+....|+.
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~-~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYET-TVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhh-ccccccccchhccccccccccccCCccchhhhhccccc
Confidence 345556666776665554 45578899987533221110 011 1111223445678899876666777888999
Q ss_pred EEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeecccc
Q 010256 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHL 385 (514)
Q Consensus 307 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~ 385 (514)
|++..+...... ...++. ....++++|+|.|+.++.|.. |++.-|... .+....+.+...
T Consensus 180 l~V~~~~~~~~~---v~s~p~-------------t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~--leik~~ip~Pp~- 240 (1405)
T KOG3630|consen 180 LRVKSTKQLAQN---VTSFPV-------------TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS--LEIKSEIPEPPV- 240 (1405)
T ss_pred hhhhhhhhhhhh---hcccCc-------------ccceeeEEeccccceeeEecCCCeEEEeecc--cceeecccCCCc-
Confidence 988776543221 122222 146899999999999999976 888887765 232333322221
Q ss_pred ccccccccccCCccceeeEEEcCCCCEEEE
Q 010256 386 RPKLCDLYENDSIFDKFECCLSGDGGRVAT 415 (514)
Q Consensus 386 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 415 (514)
...+.|.+++|-....+++.
T Consensus 241 ----------~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 241 ----------EENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred ----------CCCcceeEEEEecceeEEEE
Confidence 11334678999877777664
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=93.84 E-value=4.8 Score=36.24 Aligned_cols=151 Identities=14% Similarity=0.169 Sum_probs=77.6
Q ss_pred cceeEEEEecCCCEEEEEeCCeE-EEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCC
Q 010256 342 ASISDIKFARNGRHILSRDYMTL-KLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 420 (514)
Q Consensus 342 ~~i~~~~~s~~g~~l~~~~~~~i-~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 420 (514)
+.+..+.-+++|++++++..|.+ .-||--. .. ...|.... -..+.++.|+|++.+.+.+ ..|
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~--~~---w~~~~r~~-----------~~riq~~gf~~~~~lw~~~-~Gg 207 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQ--TT---WQPHNRNS-----------SRRIQSMGFSPDGNLWMLA-RGG 207 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT---SS----EEEE--S-----------SS-EEEEEE-TTS-EEEEE-TTT
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCCC--cc---ceEEccCc-----------cceehhceecCCCCEEEEe-CCc
Confidence 67888999999999999988655 4566432 11 11221110 0124489999999887655 778
Q ss_pred cEEEEecCCCcee--eeeec--CCCcceeEEEECCCCCceeecCCCCeEEE-eeCCCCCccccCCcccccccceEEEEEc
Q 010256 421 LFRVFGCSEGSAE--STTLE--ASKNPMRRQVQTPSRPSRPLGSLSGVVRR-VKGADNSALDANGNAFDFSMKLLHLAWH 495 (514)
Q Consensus 421 ~i~iwd~~~~~~~--~~~~~--~~~~~v~~~~~~~~~~~l~s~s~d~~v~i-~~~~~~~~~~~~~~~~~~~~~v~~~~~s 495 (514)
.|++=+....... ..... .....+..+++.+++...|+|+.. ++.. .++.+.++..... ......++.+.|.
T Consensus 208 ~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-~l~~S~DgGktW~~~~~~--~~~~~n~~~i~f~ 284 (302)
T PF14870_consen 208 QIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-TLLVSTDGGKTWQKDRVG--ENVPSNLYRIVFV 284 (302)
T ss_dssp EEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT--EEEESSTTSS-EE-GGG--TTSSS---EEEEE
T ss_pred EEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc-cEEEeCCCCccceECccc--cCCCCceEEEEEc
Confidence 8877762211110 01111 122336788999998888877654 5554 6666665322111 1235678899998
Q ss_pred CCCCEEEEEecCcEEEE
Q 010256 496 PSENSIACAASNSLYMY 512 (514)
Q Consensus 496 pd~~~l~~~~~~~~~i~ 512 (514)
++.+-++.|.+.-+.-|
T Consensus 285 ~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 285 NPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp ETTEEEEE-STTEEEEE
T ss_pred CCCceEEECCCcEEEEe
Confidence 88888888776655443
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.096 Score=52.26 Aligned_cols=114 Identities=12% Similarity=0.122 Sum_probs=62.0
Q ss_pred CCcEEeceeeccccccccccccccccccCccCeEEEEECC---CCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCccc
Q 010256 204 VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS---DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME 279 (514)
Q Consensus 204 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 279 (514)
-|.+.+|+ +.-.+.....+...+....-...+.-+.|.| ..-++..+ ++++|++..+++.... + +.
T Consensus 152 vg~lfVy~-vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~--l-------~r 221 (1283)
T KOG1916|consen 152 VGELFVYD-VDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRS--L-------FR 221 (1283)
T ss_pred hhhhheee-hHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHHH--H-------HH
Confidence 35667777 3333332222111111122223334455554 45667777 8899998877644331 1 22
Q ss_pred ccCCceEEE-----------EEecCCCcEEEEEecCCeEEEEEcCC-Cccccccccceecc
Q 010256 280 DLTEVITSA-----------EFHPTHCNMLAYSSSKGSIRLIDMRQ-SALCDTHSKLFEEQ 328 (514)
Q Consensus 280 ~~~~~i~~v-----------~~~p~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~~ 328 (514)
+|...+..+ ..+||| ..|+.++.||.++.|.+.- ++...+....++.+
T Consensus 222 sHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkph 281 (1283)
T KOG1916|consen 222 SHSQRVTDMAFFAEGVLKLASLSPDG-TVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPH 281 (1283)
T ss_pred hcCCCcccHHHHhhchhhheeeCCCC-cEEEEeecCCccceeeeeeeccccHhhhhccCCC
Confidence 344333322 368999 8999999999999998753 33333334444444
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.44 E-value=9.3 Score=38.26 Aligned_cols=51 Identities=8% Similarity=0.023 Sum_probs=34.3
Q ss_pred eeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeec-CCCcceeEEEECCC
Q 010256 401 KFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE-ASKNPMRRQVQTPS 452 (514)
Q Consensus 401 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~ 452 (514)
+..+..||+.++|+--..+|.|.+-+....+.. ..+. +...+...++|..+
T Consensus 219 ~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~l-ce~~~~~~~~p~qm~Wcgn 270 (829)
T KOG2280|consen 219 VVKISVSPNRRFLALYTETGKIWVVSIDLSQIL-CEFNCTDHDPPKQMAWCGN 270 (829)
T ss_pred EEEEEEcCCcceEEEEecCCcEEEEecchhhhh-hccCCCCCCchHhceeecC
Confidence 347899999999999999999999887765333 3443 11223336666544
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.43 E-value=5.1 Score=35.21 Aligned_cols=176 Identities=9% Similarity=0.112 Sum_probs=95.4
Q ss_pred cCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEE
Q 010256 231 AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 309 (514)
Q Consensus 231 ~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~ 309 (514)
+-...+.++.|+|+.+.|.+. +...-.++=.. .+..++.+ .+.+. ...-.|.+..++ ++.++--.++.+.+
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~-~Gdlirti-----PL~g~-~DpE~Ieyig~n-~fvi~dER~~~l~~ 154 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTK-EGDLIRTI-----PLTGF-SDPETIEYIGGN-QFVIVDERDRALYL 154 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEec-CCceEEEe-----ccccc-CChhHeEEecCC-EEEEEehhcceEEE
Confidence 444559999999999998887 55555554333 44444433 33332 224567887776 66666566888888
Q ss_pred EEcCCCcccccc-ccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccc-
Q 010256 310 IDMRQSALCDTH-SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLR- 386 (514)
Q Consensus 310 wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~- 386 (514)
+.+......... ...+.... ....+...-.++|+|..+.|..+.. .-+.||.+.. .. ..+..|....
T Consensus 155 ~~vd~~t~~~~~~~~~i~L~~-------~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~-~~--~~l~~~~~~~~ 224 (316)
T COG3204 155 FTVDADTTVISAKVQKIPLGT-------TNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ-SP--SSLSVHASLDP 224 (316)
T ss_pred EEEcCCccEEeccceEEeccc-------cCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec-CC--cccccccccCc
Confidence 877665322110 00111111 1111356788999998777777654 5566666553 11 1111111100
Q ss_pred cccccccccCCccceeeEEEcCC-CCEEEEEeCCCcEEEEecC
Q 010256 387 PKLCDLYENDSIFDKFECCLSGD-GGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~ 428 (514)
.....++ +.++.++.|++. +.+|+-+..++.+.-.|..
T Consensus 225 ~~~~~~f----~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 225 TADRDLF----VLDVSGLEFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred ccccceE----eeccccceecCCCCcEEEEecCCceEEEEecC
Confidence 0001111 123457788764 4556666666767666665
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.36 Score=40.24 Aligned_cols=65 Identities=11% Similarity=0.157 Sum_probs=40.2
Q ss_pred CCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEE-EecCCCcEEEEEecCCeEEEEEcCCCcc
Q 010256 245 GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAE-FHPTHCNMLAYSSSKGSIRLIDMRQSAL 317 (514)
Q Consensus 245 ~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~-~~p~~~~~l~~~~~dg~i~~wd~~~~~~ 317 (514)
+..++.| .+|.|.+|........... .......|-++. -..++ .+..+++.||.|+.|++.-++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~-------~~s~~e~i~~~Ip~~~~~-~~~c~~~~dg~ir~~n~~p~k~ 136 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDR-------VCSGEESIDLGIPNGRDS-SLGCVGAQDGRIRACNIKPNKV 136 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHh-------hhcccccceecccccccc-ceeEEeccCCceeeeccccCce
Confidence 4567777 9999999998733322211 111122233222 22233 5888999999999999877654
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=93.24 E-value=5.1 Score=37.66 Aligned_cols=113 Identities=9% Similarity=0.096 Sum_probs=55.2
Q ss_pred cCeEEEEECCCCCEEEEe-c-----------CC-eEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEE
Q 010256 234 YHINSISNNSDGETFISA-D-----------DL-RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY 300 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~-~-----------d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~ 300 (514)
.....|+|.++|+++++- . .+ .|.+++-..+.-..... ..+.........+++.+++ +++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~----~vfa~~l~~p~Gi~~~~~G--lyV- 86 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKS----NVFAEELSMVTGLAVAVGG--VYV- 86 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCccee----EEeecCCCCccceeEecCC--EEE-
Confidence 345689999999988874 1 12 67666543222111000 0112223346789998886 444
Q ss_pred EecCCeEEEEEcCCCcccc-ccccceeccCCCCccceeeccccceeEEEEecCCCEEEE
Q 010256 301 SSSKGSIRLIDMRQSALCD-THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 358 (514)
Q Consensus 301 ~~~dg~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 358 (514)
++.....++.|........ +....+..-... -..+......++|.|||.+.++
T Consensus 87 ~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~-----~~~~~~~~~~l~~gpDG~LYv~ 140 (367)
T TIGR02604 87 ATPPDILFLRDKDGDDKADGEREVLLSGFGGQ-----INNHHHSLNSLAWGPDGWLYFN 140 (367)
T ss_pred eCCCeEEEEeCCCCCCCCCCccEEEEEccCCC-----CCcccccccCceECCCCCEEEe
Confidence 3444333344543322111 101111110000 0001245778999999987776
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.23 E-value=1.8 Score=40.99 Aligned_cols=89 Identities=20% Similarity=0.271 Sum_probs=52.4
Q ss_pred cceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCcccc
Q 010256 399 FDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDA 478 (514)
Q Consensus 399 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~ 478 (514)
+.|..+..++.|..++-.+.+|.+..+=.+.-++ ...++.....|.+-.+.-+.++..+.
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~-~s~~eDgk~~v~CRt~~i~~~~ftss------------------- 163 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGK-NSEFEDGKSTVNCRTTPVAERFFTSS------------------- 163 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCc-cceecCCCceEEEEeecccceeeccC-------------------
Confidence 3566888999999999888888654432221111 12334344445555555444433222
Q ss_pred CCcccccccceEEEEEcCCC----CEEEEEecCcEEEEe
Q 010256 479 NGNAFDFSMKLLHLAWHPSE----NSIACAASNSLYMYY 513 (514)
Q Consensus 479 ~~~~~~~~~~v~~~~~spd~----~~l~~~~~~~~~i~~ 513 (514)
..-.+..++|||+. .+++..+++.+.+|+
T Consensus 164 ------~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~ 196 (741)
T KOG4460|consen 164 ------TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYS 196 (741)
T ss_pred ------CceeeeeccccCCccCCceEEEEecCcEEEEEe
Confidence 13456788999976 445566677777775
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=93.17 E-value=7.8 Score=36.62 Aligned_cols=148 Identities=12% Similarity=0.145 Sum_probs=83.3
Q ss_pred ceeEEEEecCCCEEEEEeCCeEEE-EEccCCCCce-eeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCC
Q 010256 343 SISDIKFARNGRHILSRDYMTLKL-WDINMDSGPV-ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 420 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~~~~~~i~i-wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 420 (514)
....+..+++|.+++.+..|.+.. ||- +... ......... .+..+.|.+++.+++++ .+|
T Consensus 240 sf~~v~~~~dG~~~~vg~~G~~~~s~d~---G~~~W~~~~~~~~~--------------~l~~v~~~~dg~l~l~g-~~G 301 (398)
T PLN00033 240 TFSTVNRSPDGDYVAVSSRGNFYLTWEP---GQPYWQPHNRASAR--------------RIQNMGWRADGGLWLLT-RGG 301 (398)
T ss_pred ceeeEEEcCCCCEEEEECCccEEEecCC---CCcceEEecCCCcc--------------ceeeeeEcCCCCEEEEe-CCc
Confidence 355567788999999888765432 332 2221 111111110 13378899999988765 445
Q ss_pred cEEEEecCCCce----eeeeecC--CCcceeEEEECCCCCceeecCCCCeEEE-eeCCCCCccccCCcccccccceEEEE
Q 010256 421 LFRVFGCSEGSA----ESTTLEA--SKNPMRRQVQTPSRPSRPLGSLSGVVRR-VKGADNSALDANGNAFDFSMKLLHLA 493 (514)
Q Consensus 421 ~i~iwd~~~~~~----~~~~~~~--~~~~v~~~~~~~~~~~l~s~s~d~~v~i-~~~~~~~~~~~~~~~~~~~~~v~~~~ 493 (514)
.+. +....+.. ....+.. ....+..+.+.+++..+++| .+|.+.. .++.+.++..... -.....++.+.
T Consensus 302 ~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~D~G~tW~~~~~~--~~~~~~ly~v~ 377 (398)
T PLN00033 302 GLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRSTDGGKSWKRDKGA--DNIAANLYSVK 377 (398)
T ss_pred eEE-EecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeCCCCcceeEcccc--CCCCcceeEEE
Confidence 543 33333321 1111111 22357888899887776666 5676666 5555554211111 11246788999
Q ss_pred EcCCCCEEEEEecCcEEEE
Q 010256 494 WHPSENSIACAASNSLYMY 512 (514)
Q Consensus 494 ~spd~~~l~~~~~~~~~i~ 512 (514)
|.++++.+++|...-+.-|
T Consensus 378 f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 378 FFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred EcCCCceEEEeCCcEEEEe
Confidence 9888888887776655544
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=92.95 E-value=8.7 Score=36.56 Aligned_cols=99 Identities=22% Similarity=0.273 Sum_probs=61.0
Q ss_pred cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCC
Q 010256 252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (514)
Q Consensus 252 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 331 (514)
++..|.-.|.+..+..+.....+. . .......+..-...| ++|.++..|-|++||--.-..
T Consensus 535 S~~svFrIDPR~~gNKi~v~esKd--Y-~tKn~Fss~~tTesG--yIa~as~kGDirLyDRig~rA-------------- 595 (776)
T COG5167 535 SDYSVFRIDPRARGNKIKVVESKD--Y-KTKNKFSSGMTTESG--YIAAASRKGDIRLYDRIGKRA-------------- 595 (776)
T ss_pred cccceEEecccccCCceeeeeehh--c-cccccccccccccCc--eEEEecCCCceeeehhhcchh--------------
Confidence 666676667665443222211110 0 112223344444455 899999999999999543221
Q ss_pred CccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccC
Q 010256 332 GTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINM 371 (514)
Q Consensus 332 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~ 371 (514)
...+++....|..+..+.+|+++++.....+.+-|+.-
T Consensus 596 --KtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~i 633 (776)
T COG5167 596 --KTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVPI 633 (776)
T ss_pred --hhcCcccccceeeeEeecCCcEEEEeecceEEEEeccc
Confidence 11234445689999999999999887667888888753
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.82 Score=42.26 Aligned_cols=158 Identities=8% Similarity=0.047 Sum_probs=86.4
Q ss_pred ccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCcccee-eEEEcCCCCEEEEEeCC
Q 010256 341 IASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKF-ECCLSGDGGRVATGSYS 419 (514)
Q Consensus 341 ~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~d 419 (514)
-..+..+-..|||+.++.-+..++.++++.+ +++..-+.-+... ++....|+ ++..-..|.-|..++.|
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~--r~l~~rkl~~dsp--------g~~~~~Vte~l~lL~Gg~SLLv~~~d 289 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTGSELVVALLDK--RSLQIRKLVDDSP--------GDSRHQVTEQLYLLSGGFSLLVVHED 289 (733)
T ss_pred ccchHhhEECCCCCEEEEecCCeEEEEeecc--cccchhhhhhcCC--------CchHHHHHHHHHHHhCceeEEEEcCC
Confidence 3578888999999999987667899999875 2221111111100 00000011 11122345567788899
Q ss_pred CcEEEE-ecCCCcee-eee---ecCCCcceeEEEECCCCCceeecCCCCeEEEe-eCCCCCccccCCcccccccceEEEE
Q 010256 420 NLFRVF-GCSEGSAE-STT---LEASKNPMRRQVQTPSRPSRPLGSLSGVVRRV-KGADNSALDANGNAFDFSMKLLHLA 493 (514)
Q Consensus 420 g~i~iw-d~~~~~~~-~~~---~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~-~~~~~~~~~~~~~~~~~~~~v~~~~ 493 (514)
|.|.-| |+..+... ... ++-...++..+..-.+.+..++-+..|++... ...+.. -+.. ..-..+..++
T Consensus 290 G~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~--lL~~---~~~~~~~~~~ 364 (733)
T COG4590 290 GLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKL--LLFE---RAYQAPQLVA 364 (733)
T ss_pred CceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcc--eehh---hhhcCcceee
Confidence 988777 44433221 111 11112334344444455666777777777771 111111 0000 1123567899
Q ss_pred EcCCCCEEEEEecCcEEEEe
Q 010256 494 WHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 494 ~spd~~~l~~~~~~~~~i~~ 513 (514)
+||.+.+|+.-..+++.+++
T Consensus 365 ~Sp~~~~Ll~e~~gki~~~~ 384 (733)
T COG4590 365 MSPNQAYLLSEDQGKIRLAQ 384 (733)
T ss_pred eCcccchheeecCCceEEEE
Confidence 99999999988888877764
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.91 Score=38.75 Aligned_cols=79 Identities=9% Similarity=0.087 Sum_probs=52.3
Q ss_pred EecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEc
Q 010256 290 FHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDI 369 (514)
Q Consensus 290 ~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~ 369 (514)
+..++ .++++-+.+|.+++||+.+++.....+.....-....... ......|..+.++.+|.-+++-++|..+.|+.
T Consensus 18 l~~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~--~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSD--KSSSPNITSCSLTSNGVPIVTLSNGDSYSYSP 94 (219)
T ss_pred EEeCC-CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhccccccc--CCCCCcEEEEEEcCCCCEEEEEeCCCEEEecc
Confidence 34455 7899999999999999999876543311111100000000 02345789999999999998877788899987
Q ss_pred cC
Q 010256 370 NM 371 (514)
Q Consensus 370 ~~ 371 (514)
..
T Consensus 95 ~L 96 (219)
T PF07569_consen 95 DL 96 (219)
T ss_pred cc
Confidence 74
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=92.69 E-value=8.1 Score=35.57 Aligned_cols=168 Identities=12% Similarity=0.140 Sum_probs=84.3
Q ss_pred CCceEEEEEecCCCcEEEEEecCCe------EEEEEcCCCcccccccc-----ceeccCCCCccceeeccccceeEEEEe
Q 010256 282 TEVITSAEFHPTHCNMLAYSSSKGS------IRLIDMRQSALCDTHSK-----LFEEQEAPGTRSFFTEIIASISDIKFA 350 (514)
Q Consensus 282 ~~~i~~v~~~p~~~~~l~~~~~dg~------i~~wd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~s 350 (514)
-+.+..+.+.|++ ..+++.+.+|. +..+++.........+. .+..... ..+....-..-++++.
T Consensus 19 ~GGlSgl~~~~~~-~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G----~~~~~~~~D~Egi~~~ 93 (326)
T PF13449_consen 19 FGGLSGLDYDPDD-GRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDG----QPFPKNGLDPEGIAVP 93 (326)
T ss_pred cCcEeeEEEeCCC-CEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCC----CcCCcCCCChhHeEEe
Confidence 3567889999765 45666677777 55555544110000000 1111100 0011111245578887
Q ss_pred cCCCEEEEEe-C------CeEEEEEccCCCCceeeeeecccccccc---ccccccCCccceeeEEEcCCCCEEEEEeC--
Q 010256 351 RNGRHILSRD-Y------MTLKLWDINMDSGPVATFQVHEHLRPKL---CDLYENDSIFDKFECCLSGDGGRVATGSY-- 418 (514)
Q Consensus 351 ~~g~~l~~~~-~------~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-- 418 (514)
++|.++++.. + ..|.-++.. ++....+.......... .....|.. ..+++++|||+.|+++..
T Consensus 94 ~~g~~~is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G---~E~la~~~dG~~l~~~~E~~ 168 (326)
T PF13449_consen 94 PDGSFWISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRG---FEGLAVSPDGRTLFAAMESP 168 (326)
T ss_pred cCCCEEEEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCC---eEEEEECCCCCEEEEEECcc
Confidence 8888888753 2 455555544 66655553333221111 12222333 338999999996665432
Q ss_pred ---CC--c-------EEE--EecCCCceee----eeecC-----CCcceeEEEECCCCCceeec
Q 010256 419 ---SN--L-------FRV--FGCSEGSAES----TTLEA-----SKNPMRRQVQTPSRPSRPLG 459 (514)
Q Consensus 419 ---dg--~-------i~i--wd~~~~~~~~----~~~~~-----~~~~v~~~~~~~~~~~l~s~ 459 (514)
|+ . ++| ||..+..... ..+.. ....+..+.+.+++++|+.=
T Consensus 169 l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 169 LKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred ccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 22 1 444 4544421111 12222 34667888999999877543
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=92.11 E-value=12 Score=36.03 Aligned_cols=59 Identities=10% Similarity=0.088 Sum_probs=38.1
Q ss_pred cCeEEEEECCCCCEEEEec-CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecC
Q 010256 234 YHINSISNNSDGETFISAD-DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT 293 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~ 293 (514)
...+.|+|.||+++|++-. .|.|++++....... .+..+..............|+++|+
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~-~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVK-VVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCcee-eeecCCceeccCCCCceeeEEECCC
Confidence 4568899999999888884 799999986543221 1111111011113677899999987
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=92.06 E-value=3.5 Score=38.04 Aligned_cols=57 Identities=19% Similarity=0.299 Sum_probs=37.0
Q ss_pred CeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecC
Q 010256 235 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT 293 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~ 293 (514)
..++|+|.|+|++|++-..|.|++++.. +.....+... +............++++|+
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~-g~~~~~v~~~-~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDKD-GSLKTPVADL-PEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEETT-TEECEEEEE--TTTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeCC-CcCcceeccc-ccccccccCCcccceeccc
Confidence 4578999999988887799999999933 3321112111 1223344567899999994
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=92.02 E-value=2.3 Score=35.48 Aligned_cols=102 Identities=12% Similarity=0.069 Sum_probs=65.3
Q ss_pred CEEEEEeCCCcEEEEecCCCce-eeeeecCCCcceeEEEECCCCCceeecCCCC------eEEEeeCCCCCcc-------
Q 010256 411 GRVATGSYSNLFRVFGCSEGSA-ESTTLEASKNPMRRQVQTPSRPSRPLGSLSG------VVRRVKGADNSAL------- 476 (514)
Q Consensus 411 ~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~------~v~i~~~~~~~~~------- 476 (514)
..|+.+...+.|.+|++..... ....+..- +.|..+.++..|.||++--.+. .+|++-.|+....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 4554446667899999984333 33444433 7888999999999999875442 4555222222100
Q ss_pred ccCC-----------------cccccccceEEEEEcCCCCEEEEEecCcEEEEe
Q 010256 477 DANG-----------------NAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 477 ~~~~-----------------~~~~~~~~v~~~~~spd~~~l~~~~~~~~~i~~ 513 (514)
.+.+ --+.....+.+++-.|-.--|++|+.+.+.+|.
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~ 161 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFT 161 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEE
Confidence 0001 011235678899999987778899999999985
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=91.97 E-value=15 Score=36.90 Aligned_cols=57 Identities=9% Similarity=0.165 Sum_probs=34.8
Q ss_pred CCCEEEEEeCCCc-----EEEEecCCCceeeee-ecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 409 DGGRVATGSYSNL-----FRVFGCSEGSAESTT-LEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 409 ~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
++.+++.|+.|+. |..||..+.+..... .......+. ...-+++..+.|+.|+.-++
T Consensus 475 ~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g--~~~~~~~ly~vGG~~~~~~l 537 (571)
T KOG4441|consen 475 NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVG--VVVLGGKLYAVGGFDGNNNL 537 (571)
T ss_pred CCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccccc--EEEECCEEEEEecccCcccc
Confidence 6777888887763 778998877654321 222222222 22336677788888887666
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=91.85 E-value=2.4 Score=40.00 Aligned_cols=37 Identities=24% Similarity=0.173 Sum_probs=31.9
Q ss_pred ccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcc
Q 010256 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRD 69 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~ 69 (514)
.....+.+++.+|++++.|+.+.-|+|.++|+.++..
T Consensus 305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~v 341 (415)
T PF14655_consen 305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIV 341 (415)
T ss_pred cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChh
Confidence 3456799999999999999988889999999987764
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=91.81 E-value=9.4 Score=34.32 Aligned_cols=192 Identities=10% Similarity=0.076 Sum_probs=91.8
Q ss_pred eEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCC----cEE-EEEecCCeEEEEEcCCCccccccccceeccC
Q 010256 255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC----NML-AYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 329 (514)
Q Consensus 255 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~----~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 329 (514)
.|.+||+.+.+ ..+.+.+.+.... ..+.+..+++....+ .++ ++=+..+.|.++|+.+++.. +......
T Consensus 35 KLv~~Dl~t~~-li~~~~~p~~~~~-~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~----Rv~~~~~ 108 (287)
T PF03022_consen 35 KLVAFDLKTNQ-LIRRYPFPPDIAP-PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSW----RVLHNSF 108 (287)
T ss_dssp EEEEEETTTTC-EEEEEE--CCCS--TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEE----EEETCGC
T ss_pred EEEEEECCCCc-EEEEEECChHHcc-cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEE----EEecCCc
Confidence 56778888665 3344434332222 456788888876321 233 33334568999999998752 2222111
Q ss_pred CCCc--cce-----eeccccceeEEEEec---CCCEEEEEeCCeEEEEEccCC----CCceeeeeecccccccccccccc
Q 010256 330 APGT--RSF-----FTEIIASISDIKFAR---NGRHILSRDYMTLKLWDINMD----SGPVATFQVHEHLRPKLCDLYEN 395 (514)
Q Consensus 330 ~~~~--~~~-----~~~~~~~i~~~~~s~---~g~~l~~~~~~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 395 (514)
.+.+ ..+ .......+..++.+| +++.|+-..-..-++|.+.+. ....... .. ...+..+...
T Consensus 109 ~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~-~~---~~~v~~lG~k 184 (287)
T PF03022_consen 109 SPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQ-AL---ASQVQDLGDK 184 (287)
T ss_dssp TTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH--H---HHT-EEEEE-
T ss_pred ceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccc-cc---cccceecccc
Confidence 1111 000 011223477788876 777787654333345554430 0000000 00 0000000000
Q ss_pred CCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCce--eeeeec--CC-CcceeEEEECC--CCCceee
Q 010256 396 DSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA--ESTTLE--AS-KNPMRRQVQTP--SRPSRPL 458 (514)
Q Consensus 396 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~--~~-~~~v~~~~~~~--~~~~l~s 458 (514)
. ..--.++++++|.++++--..+.|..|+....-. ....+. .. ...+..+.+.+ ++.+.+.
T Consensus 185 ~--~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~ 252 (287)
T PF03022_consen 185 G--SQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVL 252 (287)
T ss_dssp ----SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEE
T ss_pred C--CCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEE
Confidence 0 0011688999999998888999999999885211 111121 12 34567777777 5554433
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=91.77 E-value=8.5 Score=37.41 Aligned_cols=108 Identities=5% Similarity=0.026 Sum_probs=63.7
Q ss_pred cceeEEEEecC----C-CEEEEEeCCeEEEEEccCC----CCceeeeeeccccccccccccccCCccceeeEEEcCCCCE
Q 010256 342 ASISDIKFARN----G-RHILSRDYMTLKLWDINMD----SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR 412 (514)
Q Consensus 342 ~~i~~~~~s~~----g-~~l~~~~~~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 412 (514)
..|..+.|.|- - .+||.-....|.||-+... .+.+..-..+ +.....+... .+.|+|....
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcE---i~e~~pvLpQ-------GCVWHPk~~i 126 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCE---IREPFPVLPQ-------GCVWHPKKAI 126 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeee---ccCCcccCCC-------cccccCCCce
Confidence 46899999984 2 4677777789999998731 1222111111 1000001111 5789999998
Q ss_pred EEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeec
Q 010256 413 VATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG 459 (514)
Q Consensus 413 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 459 (514)
|+.-.....=.++++.......+.--...+.|.+.+|.+||+.|+.+
T Consensus 127 L~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVA 173 (671)
T PF15390_consen 127 LTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVA 173 (671)
T ss_pred EEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEE
Confidence 88665544444666654433332222455778889999998876554
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.76 E-value=7.9 Score=36.24 Aligned_cols=129 Identities=9% Similarity=0.047 Sum_probs=75.6
Q ss_pred eEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCC
Q 010256 236 INSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 315 (514)
Q Consensus 236 v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~ 315 (514)
-+.+-|+..++.|++...|.+.=|-..-.+.... +.--....++|.++.|++|. +.+|.--.+..|.+++....
T Consensus 25 sngvFfDDaNkqlfavrSggatgvvvkgpndDVp-----iSfdm~d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d 98 (657)
T KOG2377|consen 25 SNGVFFDDANKQLFAVRSGGATGVVVKGPNDDVP-----ISFDMDDKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPD 98 (657)
T ss_pred ccceeeccCcceEEEEecCCeeEEEEeCCCCCCC-----ceeeecCCCceeEEEeccCc-ceEEEEecCceEEEEecCCC
Confidence 3445565556666655556666666653332211 11112245699999999998 89999999999999987433
Q ss_pred ccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeecc
Q 010256 316 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHE 383 (514)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~ 383 (514)
+.........+ ..+..|....|+.+ .-+|.-.+..+.+|-.....+.++..+.+.
T Consensus 99 ~~~l~~~~~ck------------~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVks~~ 153 (657)
T KOG2377|consen 99 NSQLEYTQECK------------TKNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVKSHN 153 (657)
T ss_pred chhhHHHHHhc------------cCcceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhhhcc
Confidence 22111111111 11245888889865 555555554577777665344455554444
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.29 E-value=4.8 Score=42.18 Aligned_cols=153 Identities=9% Similarity=0.045 Sum_probs=88.1
Q ss_pred cceeEEEEecCCCEEEEE--eC-CeEEEEEccCCCCc----eeeeeeccccccccccccccCCccceeeEEEcCCCCE-E
Q 010256 342 ASISDIKFARNGRHILSR--DY-MTLKLWDINMDSGP----VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR-V 413 (514)
Q Consensus 342 ~~i~~~~~s~~g~~l~~~--~~-~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l 413 (514)
-+|..+...+|+...++- +. -.|..||++.-... ...+..+.-.. + ...+ ..++.|+|.=.. .
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~------e--k~vf-~~~~~wnP~vp~n~ 171 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSF------E--KPVF-QLKNVWNPLVPLNS 171 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchh------c--cccc-cccccccCCccchh
Confidence 356666677787766653 22 47889998751110 11111111100 0 0000 226778876443 4
Q ss_pred EEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEE
Q 010256 414 ATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLA 493 (514)
Q Consensus 414 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~ 493 (514)
+....|+.|++..+......... -......++++|+|.|+.++.|-..|++.-+.-......++..........|++|.
T Consensus 172 av~l~dlsl~V~~~~~~~~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~ 250 (1405)
T KOG3630|consen 172 AVDLSDLSLRVKSTKQLAQNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVT 250 (1405)
T ss_pred hhhccccchhhhhhhhhhhhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEE
Confidence 45668899999887644322222 13345678999999999999999999877622221111122222222267899999
Q ss_pred EcCCCCEEEEE
Q 010256 494 WHPSENSIACA 504 (514)
Q Consensus 494 ~spd~~~l~~~ 504 (514)
|-....++++-
T Consensus 251 Wl~t~eflvvy 261 (1405)
T KOG3630|consen 251 WLSTQEFLVVY 261 (1405)
T ss_pred EecceeEEEEe
Confidence 98888877743
|
|
| >KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown] | Back alignment and domain information |
|---|
Probab=90.98 E-value=23 Score=38.15 Aligned_cols=21 Identities=5% Similarity=-0.043 Sum_probs=13.6
Q ss_pred ccccceeEEEEecCCCEEEEE
Q 010256 339 EIIASISDIKFARNGRHILSR 359 (514)
Q Consensus 339 ~~~~~i~~~~~s~~g~~l~~~ 359 (514)
-|..+.++++.+|-..-|..-
T Consensus 530 ~~leWPT~LaV~Pmdnsl~Vl 550 (1899)
T KOG4659|consen 530 LQLEWPTSLAVDPMDNSLLVL 550 (1899)
T ss_pred eeeecccceeecCCCCeEEEe
Confidence 345678889999954444443
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.61 E-value=6.8 Score=36.65 Aligned_cols=103 Identities=9% Similarity=0.127 Sum_probs=66.3
Q ss_pred cceeEEEEecCCCEEEEE-eCCeEEEEEccCCCCceeee--eeccccccccccccccCCccceeeEEEcCCCCEEEEEeC
Q 010256 342 ASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATF--QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 418 (514)
Q Consensus 342 ~~i~~~~~s~~g~~l~~~-~~~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 418 (514)
++|.++.||+|.+.+|.- ++++|.+++... .++...+ +..... . .|...+|+.. .-+|..+.
T Consensus 67 G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~-d~~~l~~~~~ck~k~----------~---~IlGF~W~~s-~e~A~i~~ 131 (657)
T KOG2377|consen 67 GEIKSIKFSLDNKILAVQRTSKTVDFCNFIP-DNSQLEYTQECKTKN----------A---NILGFCWTSS-TEIAFITD 131 (657)
T ss_pred CceeEEEeccCcceEEEEecCceEEEEecCC-CchhhHHHHHhccCc----------c---eeEEEEEecC-eeEEEEec
Confidence 689999999999999995 669999999853 2222211 111111 0 1347788755 55665554
Q ss_pred CCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecC
Q 010256 419 SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGS 460 (514)
Q Consensus 419 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s 460 (514)
. .+.+|-...........+.|.-.|+-..+.++-+.++.++
T Consensus 132 ~-G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 132 Q-GIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred C-CeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 3 4677776655444456677777788788888877654443
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=90.53 E-value=16 Score=34.70 Aligned_cols=60 Identities=13% Similarity=0.034 Sum_probs=37.1
Q ss_pred EEEEEeCCCcEEEEecCCCceeeeeecCCCcce--eEEEECCCCCceeecCCCCeEEE-eeCCCCC
Q 010256 412 RVATGSYSNLFRVFGCSEGSAESTTLEASKNPM--RRQVQTPSRPSRPLGSLSGVVRR-VKGADNS 474 (514)
Q Consensus 412 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~s~s~d~~v~i-~~~~~~~ 474 (514)
.++.++.++.+.||.=.+ +.-.-+....|| ....+..-...|++-+.+|.+.+ +-|.+|.
T Consensus 302 ~llV~t~t~~LlVy~d~~---L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs 364 (418)
T PF14727_consen 302 NLLVGTHTGTLLVYEDTT---LVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPS 364 (418)
T ss_pred EEEEEecCCeEEEEeCCe---EEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCCc
Confidence 477888999999997442 222222223333 22233344668899999999999 5565554
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=90.48 E-value=14 Score=33.99 Aligned_cols=168 Identities=13% Similarity=0.136 Sum_probs=83.2
Q ss_pred cCeEEEEECC-CCCEEEEecCCe------EEEEeccCCC---ceeeeeccCCCccccc--------CCceEEEEEecCCC
Q 010256 234 YHINSISNNS-DGETFISADDLR------INLWNLEISN---QSFNIVDVKPANMEDL--------TEVITSAEFHPTHC 295 (514)
Q Consensus 234 ~~v~~~~~~~-~~~~l~s~~d~~------i~iwd~~~~~---~~~~~~~~~~~~~~~~--------~~~i~~v~~~p~~~ 295 (514)
+.++.+.+.+ ++.+++.++++. +..+++.... ....+.. ...+... ..-.-+|++.+++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~~~~G~~~~~~~~D~Egi~~~~~g- 96 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILD--MIPLRDPDGQPFPKNGLDPEGIAVPPDG- 96 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEecc--ceeccCCCCCcCCcCCCChhHeEEecCC-
Confidence 6678899985 455555557776 6555554311 1111111 0111111 1134478887777
Q ss_pred cEEEEEecC------CeEEEEEcCCCccccccccceeccCCCCccc---eeeccccceeEEEEecCCCEEEEE------e
Q 010256 296 NMLAYSSSK------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRS---FFTEIIASISDIKFARNGRHILSR------D 360 (514)
Q Consensus 296 ~~l~~~~~d------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~s~~g~~l~~~------~ 360 (514)
.++++.-.+ ..|..++.. |... ..+..+....... .-...+..+-+++++|+|+.|++. .
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~----~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~ 171 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLD-GRVI----RRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQ 171 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCC-Cccc----ceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccC
Confidence 666665556 678888866 5542 2221111100000 111234578999999999955542 1
Q ss_pred CC--e-------EEEEEccC--CCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEE
Q 010256 361 YM--T-------LKLWDINM--DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT 415 (514)
Q Consensus 361 ~~--~-------i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 415 (514)
++ . ++|+.... .+.+...+...-...... .....+..+.+-+++++|+.
T Consensus 172 d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~------~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 172 DGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTA------PGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred CCcccccccCceEEEEEecCCCCCccceEEEEeCCccccc------cCCCCceeEEEECCCcEEEE
Confidence 21 2 55655543 233333333222110000 02234557888889987763
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=90.40 E-value=7.4 Score=31.86 Aligned_cols=33 Identities=15% Similarity=0.332 Sum_probs=25.8
Q ss_pred cceeEEEEeeCC----CCcEEEEeeCCCeEEEEEcCc
Q 010256 113 EKINKIRWCQSA----NSALYLLSTNDKTIKLWKVQE 145 (514)
Q Consensus 113 ~~v~~i~~~~~~----~~~~l~s~~~d~~i~iw~~~~ 145 (514)
..|..++|+|.. .+.+|++.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 379999998832 245677789999999998774
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.36 E-value=12 Score=35.07 Aligned_cols=169 Identities=13% Similarity=0.064 Sum_probs=86.2
Q ss_pred ccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceee-eeccCCCcccccCCceE-EEEEecCCCcEEEEEecCCeE
Q 010256 230 HAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFN-IVDVKPANMEDLTEVIT-SAEFHPTHCNMLAYSSSKGSI 307 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~i~-~v~~~p~~~~~l~~~~~dg~i 307 (514)
..--..|..+-..|||+.+..-...++.++++.+.....+ +.+-.|. .....|+ ++..-..| .-+..++.||.|
T Consensus 217 ~~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg---~~~~~Vte~l~lL~Gg-~SLLv~~~dG~v 292 (733)
T COG4590 217 SVPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPG---DSRHQVTEQLYLLSGG-FSLLVVHEDGLV 292 (733)
T ss_pred CCCccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCC---chHHHHHHHHHHHhCc-eeEEEEcCCCce
Confidence 4444667788899999998877558888998874332211 1111110 0001121 11112223 567778888888
Q ss_pred EEE-EcCCCcc-ccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccc
Q 010256 308 RLI-DMRQSAL-CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEH 384 (514)
Q Consensus 308 ~~w-d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~ 384 (514)
.-| |.+.+.. ...+++.++... .++..+.-..+.+-+++-+. |++.++.... .+++-.-...+.
T Consensus 293 sQWFdvr~~~~p~l~h~R~f~l~p------------a~~~~l~pe~~rkgF~~l~~~G~L~~f~st~-~~~lL~~~~~~~ 359 (733)
T COG4590 293 SQWFDVRRDGQPHLNHIRNFKLAP------------AEVQFLLPETNRKGFYSLYRNGTLQSFYSTS-EKLLLFERAYQA 359 (733)
T ss_pred eeeeeeecCCCCcceeeeccccCc------------ccceeeccccccceEEEEcCCCceeeeeccc-CcceehhhhhcC
Confidence 766 5554322 111122221110 12222222223334444333 6676665543 332221111111
Q ss_pred cccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCce
Q 010256 385 LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (514)
Q Consensus 385 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 432 (514)
. .-+++||.+.+|++- +.|.++++.+++...
T Consensus 360 ~----------------~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 360 P----------------QLVAMSPNQAYLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred c----------------ceeeeCcccchheee-cCCceEEEEecCCCC
Confidence 1 158899999999864 457899999987533
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=90.01 E-value=1.8 Score=36.93 Aligned_cols=71 Identities=15% Similarity=0.210 Sum_probs=47.6
Q ss_pred ECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCccc-------ccCCceEEEEEecCCCcEEEEEecCCeEEEEEc
Q 010256 241 NNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME-------DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (514)
Q Consensus 241 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~-------~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~ 312 (514)
+...+++|++- .+|.+++||+.+.+..+.-+.+.| -+. .....|..+.++.+| .-+++-+ +|....|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~p-ll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAP-LLNSSPVSDKSSSPNITSCSLTSNG-VPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHH-HhcccccccCCCCCcEEEEEEcCCC-CEEEEEe-CCCEEEecc
Confidence 44567777777 999999999997765543322222 111 355778889999888 5566544 577888886
Q ss_pred CC
Q 010256 313 RQ 314 (514)
Q Consensus 313 ~~ 314 (514)
.-
T Consensus 95 ~L 96 (219)
T PF07569_consen 95 DL 96 (219)
T ss_pred cc
Confidence 54
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.63 E-value=13 Score=37.27 Aligned_cols=23 Identities=0% Similarity=0.023 Sum_probs=17.3
Q ss_pred CCCcEEEEEecCC--eEEEEEcCCCc
Q 010256 293 THCNMLAYSSSKG--SIRLIDMRQSA 316 (514)
Q Consensus 293 ~~~~~l~~~~~dg--~i~~wd~~~~~ 316 (514)
++ .+.++|+.++ .+..||..+.+
T Consensus 512 ~~-~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 512 DN-TIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CC-EEEEEeeecceeehhhcCccccc
Confidence 45 7889999888 67777777654
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=89.31 E-value=4 Score=41.96 Aligned_cols=100 Identities=4% Similarity=-0.019 Sum_probs=57.9
Q ss_pred ceeEEEEecCCCEEEEEe-----C-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEE
Q 010256 343 SISDIKFARNGRHILSRD-----Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 416 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~~~-----~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 416 (514)
.+..+.+||||++|+.+. + ..|++.|+.+ +..+........ ..++|++|++.|+..
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~t-g~~l~~~i~~~~-----------------~~~~w~~D~~~~~y~ 189 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLET-GNWYPELLDNVE-----------------PSFVWANDSWTFYYV 189 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCC-CCCCCccccCcc-----------------eEEEEeeCCCEEEEE
Confidence 467788999999998642 2 5788888875 543222111110 168999999876655
Q ss_pred eCC------CcEEEEecCCCcee-eeeecCCCccee-EEEECCCCCceeecC
Q 010256 417 SYS------NLFRVFGCSEGSAE-STTLEASKNPMR-RQVQTPSRPSRPLGS 460 (514)
Q Consensus 417 ~~d------g~i~iwd~~~~~~~-~~~~~~~~~~v~-~~~~~~~~~~l~s~s 460 (514)
..+ ..|+.+++.++... ...++....... ....+.++++++..+
T Consensus 190 ~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~ 241 (686)
T PRK10115 190 RKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHL 241 (686)
T ss_pred EecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEE
Confidence 432 36788888876322 234443333333 223344777654443
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=88.92 E-value=15 Score=32.11 Aligned_cols=194 Identities=12% Similarity=0.131 Sum_probs=98.6
Q ss_pred ccceEEEEEcCCCCeEEEecCCC--eEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccc
Q 010256 35 VDIISAIEFDKSGDHLATGDRGG--RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (514)
....-.+.|..+|.++-+.+.-| .|+.+|+.+++... ...+...- ..
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~---------------------~~~l~~~~----------Fg 92 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQ---------------------SVPLPPRY----------FG 92 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEE---------------------EEE-TTT------------E
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEE---------------------EEECCccc----------cc
Confidence 34566788877787777776655 78999998887430 00111000 00
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
+.|+-+ ++++....=.++...+||..+.+.......... .--...|++.+
T Consensus 93 EGit~~------~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~E------------------GWGLt~dg~~L------ 142 (264)
T PF05096_consen 93 EGITIL------GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGE------------------GWGLTSDGKRL------ 142 (264)
T ss_dssp EEEEEE------TTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS--------------------EEEECSSCE------
T ss_pred eeEEEE------CCEEEEEEecCCeEEEEccccceEEEEEecCCc------------------ceEEEcCCCEE------
Confidence 111111 122333344568899999998877776665521 11223566666
Q ss_pred CCCCcccCCCCCCcEEeceeecccccccccccccccc-ccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYA-HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 270 (514)
+.......+.++| ..+.+. ........ ...-..++.+.+- +|...|=. ....|...|..++. ....
T Consensus 143 ------i~SDGS~~L~~~d-P~~f~~---~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~-V~~~ 210 (264)
T PF05096_consen 143 ------IMSDGSSRLYFLD-PETFKE---VRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGK-VVGW 210 (264)
T ss_dssp ------EEE-SSSEEEEE--TTT-SE---EEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-B-EEEE
T ss_pred ------EEECCccceEEEC-Ccccce---EEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCe-EEEE
Confidence 6666666777666 222111 11111100 1112345666665 56555556 67778888888654 3333
Q ss_pred eccCC--------CcccccCCceEEEEEecCCCcEEEEE
Q 010256 271 VDVKP--------ANMEDLTEVITSAEFHPTHCNMLAYS 301 (514)
Q Consensus 271 ~~~~~--------~~~~~~~~~i~~v~~~p~~~~~l~~~ 301 (514)
+++.. .......+-.+.|++.|....+++||
T Consensus 211 iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 211 IDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 33221 00011246688999999886667766
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=88.83 E-value=19 Score=33.23 Aligned_cols=153 Identities=8% Similarity=0.050 Sum_probs=85.1
Q ss_pred cceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCc
Q 010256 342 ASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 421 (514)
Q Consensus 342 ~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 421 (514)
..+.++.+.|++.+++++..|.+..- .+..++.-........ ..++++.+.++++.++.+ ..|.
T Consensus 173 g~~~~i~~~~~g~~v~~g~~G~i~~s-~~~gg~tW~~~~~~~~--------------~~l~~i~~~~~g~~~~vg-~~G~ 236 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSSRGNFYST-WEPGQTAWTPHQRNSS--------------RRLQSMGFQPDGNLWMLA-RGGQ 236 (334)
T ss_pred ceEEEEEECCCCeEEEEeCCceEEEE-cCCCCCeEEEeeCCCc--------------ccceeeeEcCCCCEEEEe-cCCE
Confidence 56889999999988888877755432 1111222222221111 113378899999877765 4465
Q ss_pred EEEEecCCCce-eeeeec--CCCcceeEEEECCCCCceeecCCCCeEEE-eeCCCCCccccCCcccccccceEEEEEcCC
Q 010256 422 FRVFGCSEGSA-ESTTLE--ASKNPMRRQVQTPSRPSRPLGSLSGVVRR-VKGADNSALDANGNAFDFSMKLLHLAWHPS 497 (514)
Q Consensus 422 i~iwd~~~~~~-~~~~~~--~~~~~v~~~~~~~~~~~l~s~s~d~~v~i-~~~~~~~~~~~~~~~~~~~~~v~~~~~spd 497 (514)
+++=....+.. ...... .....+.++.+.+++..++.+ .+|.+.. .++.+.+....... ......+.+.|..+
T Consensus 237 ~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~~S~d~G~tW~~~~~~~--~~~~~~~~~~~~~~ 313 (334)
T PRK13684 237 IRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLLVSKDGGKTWEKDPVGE--EVPSNFYKIVFLDP 313 (334)
T ss_pred EEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEEEeCCCCCCCeECCcCC--CCCcceEEEEEeCC
Confidence 54322333311 101111 122346788888887766554 5777766 44444432111000 12346788999888
Q ss_pred CCEEEEEecCcEEEEe
Q 010256 498 ENSIACAASNSLYMYY 513 (514)
Q Consensus 498 ~~~l~~~~~~~~~i~~ 513 (514)
++.+++|....+.-|.
T Consensus 314 ~~~~~~G~~G~il~~~ 329 (334)
T PRK13684 314 EKGFVLGQRGVLLRYV 329 (334)
T ss_pred CceEEECCCceEEEec
Confidence 8888887777666553
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.68 E-value=18 Score=36.29 Aligned_cols=54 Identities=9% Similarity=0.009 Sum_probs=32.0
Q ss_pred CCCEEEEEeCC------CcEEEEecCC-Cceee-eeecCCCcceeEEEECCCCCceeecCCCCe
Q 010256 409 DGGRVATGSYS------NLFRVFGCSE-GSAES-TTLEASKNPMRRQVQTPSRPSRPLGSLSGV 464 (514)
Q Consensus 409 ~~~~l~s~~~d------g~i~iwd~~~-~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~ 464 (514)
++++.+.|+.+ ..+..||..+ .+... ..+.........++ -++++.++|+.|+.
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~ 524 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESY 524 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecce
Confidence 56777777654 2467899887 44432 33333333333333 37788888888873
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=88.37 E-value=5.1 Score=32.80 Aligned_cols=30 Identities=13% Similarity=0.153 Sum_probs=24.1
Q ss_pred ceeeEEEcCCC------CEEEEEeCCCcEEEEecCC
Q 010256 400 DKFECCLSGDG------GRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 400 ~v~~~~~s~~~------~~l~s~~~dg~i~iwd~~~ 429 (514)
.+..++|||-| -+|++.+.++.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 35589999954 3788899999999998763
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=88.24 E-value=15 Score=35.15 Aligned_cols=137 Identities=12% Similarity=0.037 Sum_probs=80.8
Q ss_pred CCCEEEE-EeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCC--------CCEEEEEeCCCc
Q 010256 352 NGRHILS-RDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD--------GGRVATGSYSNL 421 (514)
Q Consensus 352 ~g~~l~~-~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--------~~~l~s~~~dg~ 421 (514)
+..+|+. |.. ..++-.|+.. ++.+..+..+... -+.|.|+ .+.|+--| +..
T Consensus 478 dssli~~dg~~~~kLykmDIEr-GkvveeW~~~ddv-----------------vVqy~p~~kf~qmt~eqtlvGlS-~~s 538 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIER-GKVVEEWDLKDDV-----------------VVQYNPYFKFQQMTDEQTLVGLS-DYS 538 (776)
T ss_pred CcceEEecCCCcccceeeeccc-ceeeeEeecCCcc-----------------eeecCCchhHHhcCccceEEeec-ccc
Confidence 4455554 444 7788888887 8888888877754 3445553 23444334 444
Q ss_pred EEEEecCCCceeeeeecCCCcceeE----EEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCC
Q 010256 422 FRVFGCSEGSAESTTLEASKNPMRR----QVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPS 497 (514)
Q Consensus 422 i~iwd~~~~~~~~~~~~~~~~~v~~----~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd 497 (514)
|.-.|.+-....+. ........+. ........|+|.+|..|-||+++.-... ......+....|..+.-+.+
T Consensus 539 vFrIDPR~~gNKi~-v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~r---AKtalP~lG~aIk~idvta~ 614 (776)
T COG5167 539 VFRIDPRARGNKIK-VVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKR---AKTALPGLGDAIKHIDVTAN 614 (776)
T ss_pred eEEecccccCCcee-eeeehhccccccccccccccCceEEEecCCCceeeehhhcch---hhhcCcccccceeeeEeecC
Confidence 44445443322211 1111222222 2223456699999999999993322111 11122236789999999999
Q ss_pred CCEEEEEecCcEEE
Q 010256 498 ENSIACAASNSLYM 511 (514)
Q Consensus 498 ~~~l~~~~~~~~~i 511 (514)
|++|++.+.+.+.+
T Consensus 615 Gk~ilaTCk~yllL 628 (776)
T COG5167 615 GKHILATCKNYLLL 628 (776)
T ss_pred CcEEEEeecceEEE
Confidence 99999888876655
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=88.06 E-value=22 Score=32.90 Aligned_cols=104 Identities=16% Similarity=0.083 Sum_probs=58.6
Q ss_pred eeEEEcCCCCEEEEEeCCCcEEE-EecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE--eeCCCCCcccc
Q 010256 402 FECCLSGDGGRVATGSYSNLFRV-FGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR--VKGADNSALDA 478 (514)
Q Consensus 402 ~~~~~s~~~~~l~s~~~dg~i~i-wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i--~~~~~~~~~~~ 478 (514)
..+.+.|++.+++++. .|.+.. ++-...... .........++.+.+.++++.++.+ ..|.+++ .++...+.. .
T Consensus 176 ~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~-~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~-~ 251 (334)
T PRK13684 176 RNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWT-PHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSK-P 251 (334)
T ss_pred EEEEECCCCeEEEEeC-CceEEEEcCCCCCeEE-EeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcccc-c
Confidence 3788899987776654 454432 222111121 1222344678889999999887765 5677766 233333321 1
Q ss_pred CCcccccccceEEEEEcCCCCEEEEEecCcE
Q 010256 479 NGNAFDFSMKLLHLAWHPSENSIACAASNSL 509 (514)
Q Consensus 479 ~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~ 509 (514)
..........+.++++.|++..++++....+
T Consensus 252 ~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v 282 (334)
T PRK13684 252 IIPEITNGYGYLDLAYRTPGEIWAGGGNGTL 282 (334)
T ss_pred cCCccccccceeeEEEcCCCCEEEEcCCCeE
Confidence 1100112345788999998887776655433
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=87.70 E-value=26 Score=33.27 Aligned_cols=155 Identities=9% Similarity=0.090 Sum_probs=81.9
Q ss_pred eEEEEECCCCCEEEEecCCeEE-EEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCC
Q 010256 236 INSISNNSDGETFISADDLRIN-LWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 314 (514)
Q Consensus 236 v~~~~~~~~~~~l~s~~d~~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~ 314 (514)
...+..++++.+++.+..|.+. -||-- +.....+ . ......++++.+.+++ .++++ +..|.+.. ....
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G--~~~W~~~-----~-~~~~~~l~~v~~~~dg-~l~l~-g~~G~l~~-S~d~ 309 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPG--QPYWQPH-----N-RASARRIQNMGWRADG-GLWLL-TRGGGLYV-SKGT 309 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCC--CcceEEe-----c-CCCccceeeeeEcCCC-CEEEE-eCCceEEE-ecCC
Confidence 4556678888888888656543 34432 2111110 1 1124568899999998 56654 46666543 3333
Q ss_pred CccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccc
Q 010256 315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYE 394 (514)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (514)
+..- . ...|..... ......+.++.|.+++..+++|..|.+....-. ++.-..........
T Consensus 310 G~~~-~-~~~f~~~~~-------~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~--G~tW~~~~~~~~~~-------- 370 (398)
T PLN00033 310 GLTE-E-DFDFEEADI-------KSRGFGILDVGYRSKKEAWAAGGSGILLRSTDG--GKSWKRDKGADNIA-------- 370 (398)
T ss_pred CCcc-c-ccceeeccc-------CCCCcceEEEEEcCCCcEEEEECCCcEEEeCCC--CcceeEccccCCCC--------
Confidence 3210 0 001111100 001135889999999999999988876665422 44333322111110
Q ss_pred cCCccceeeEEEcCCCCEEEEEeCCCcEEEE
Q 010256 395 NDSIFDKFECCLSGDGGRVATGSYSNLFRVF 425 (514)
Q Consensus 395 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 425 (514)
.. .+.+.|.++++.+++| .+|.|.-|
T Consensus 371 -~~---ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 371 -AN---LYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred -cc---eeEEEEcCCCceEEEe-CCcEEEEe
Confidence 11 2378888777766654 55766544
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.53 E-value=19 Score=30.60 Aligned_cols=96 Identities=6% Similarity=0.094 Sum_probs=60.4
Q ss_pred ceeEEEEecCCCEEEEEeC--CeEEEEEccCC-CC-----ceeeeeeccccccccccccccCCccceeeEEEcCCCCEEE
Q 010256 343 SISDIKFARNGRHILSRDY--MTLKLWDINMD-SG-----PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA 414 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 414 (514)
--+.++|+.+.+.+..-+. -.|.-||.+-+ +. .+..++..+.... ... + .+++..+|++.+
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~----~~P-D------Gm~ID~eG~L~V 227 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFES----LEP-D------GMTIDTEGNLYV 227 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCC----CCC-C------cceEccCCcEEE
Confidence 3467889888887776543 67777884421 21 1211211110000 000 1 466677899888
Q ss_pred EEeCCCcEEEEecCCCceeeeeecCCCcceeEEEEC
Q 010256 415 TGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQT 450 (514)
Q Consensus 415 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 450 (514)
+.-..++|.-.|..+|+ ++.++.-....+++++|-
T Consensus 228 a~~ng~~V~~~dp~tGK-~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 228 ATFNGGTVQKVDPTTGK-ILLEIKLPTPQITSCCFG 262 (310)
T ss_pred EEecCcEEEEECCCCCc-EEEEEEcCCCceEEEEec
Confidence 88888999999999984 446777678889999995
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=86.46 E-value=47 Score=34.98 Aligned_cols=139 Identities=14% Similarity=0.153 Sum_probs=78.6
Q ss_pred CccCeEEEEEC---C----CCCEEEEecCCeEEEEeccCCCc------eeeeeccCC-Ccc---cccCCceEEEEEecCC
Q 010256 232 HDYHINSISNN---S----DGETFISADDLRINLWNLEISNQ------SFNIVDVKP-ANM---EDLTEVITSAEFHPTH 294 (514)
Q Consensus 232 h~~~v~~~~~~---~----~~~~l~s~~d~~i~iwd~~~~~~------~~~~~~~~~-~~~---~~~~~~i~~v~~~p~~ 294 (514)
-..+|..|+|. . ...+|++=....+.|+...-.+. ....++..| ..+ .....+...++|+|..
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence 44678888887 2 12355544777788877321111 111111111 011 1134566799999987
Q ss_pred CcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccC
Q 010256 295 CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINM 371 (514)
Q Consensus 295 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~ 371 (514)
...||.....|...|||+.................. +....-....+....+.|.++-..|+.++...+.++|++.
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~-gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~ 233 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNIS-GSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFES 233 (765)
T ss_pred cceEEEEeccCcEEEEEeccccccCCcceeeccCCC-ccccCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCC
Confidence 789999999999999999322211100000110000 0000001111455678999888888888888999999986
|
These proteins are found in fungi. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.58 E-value=20 Score=29.92 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=17.3
Q ss_pred CCCeEEEecC--CCeEEEEEecCCccc
Q 010256 46 SGDHLATGDR--GGRVVLFERTDTRDN 70 (514)
Q Consensus 46 ~g~~l~tg~~--dg~i~iw~~~~~~~~ 70 (514)
+|.++.+.+. ...|++||+.+++..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~ 81 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEI 81 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEE
Confidence 5566666553 347999999988754
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=85.42 E-value=15 Score=28.24 Aligned_cols=113 Identities=10% Similarity=0.073 Sum_probs=65.4
Q ss_pred EEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEec----CCCcEEEEEecCCeEEEEEcC
Q 010256 239 ISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP----THCNMLAYSSSKGSIRLIDMR 313 (514)
Q Consensus 239 ~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p----~~~~~l~~~~~dg~i~~wd~~ 313 (514)
-.|......|+++ .-+.|.|++.......... .-.+..+-.....|++++-.+ ++...|+.|+. ..+..||+.
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~-~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGR-QDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCcccccccc-ccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcc
Confidence 3466666677877 8899999987643321100 000012222456677776544 22356666665 578899998
Q ss_pred CCccccccccceeccCCCCccceeeccccceeEEEEec----CCCEEEEEeCCeEEEEEcc
Q 010256 314 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR----NGRHILSRDYMTLKLWDIN 370 (514)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~----~g~~l~~~~~~~i~iwd~~ 370 (514)
...... .+.-...+.++.+-. ...+++.|+...|.-||..
T Consensus 82 ~N~d~F-----------------yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~ 125 (136)
T PF14781_consen 82 NNSDLF-----------------YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYE 125 (136)
T ss_pred cCchhh-----------------hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCC
Confidence 765421 111124577776643 4556777777777777765
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=85.04 E-value=43 Score=33.33 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=19.5
Q ss_pred EEEEeeCCCeEEEEEcCccEEEEE
Q 010256 128 LYLLSTNDKTIKLWKVQEKKVKKV 151 (514)
Q Consensus 128 ~l~s~~~d~~i~iw~~~~~~~~~~ 151 (514)
.++.++.|+.+.-.|.++|+..-.
T Consensus 122 ~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 122 KVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred EEEEEcCCCEEEEEECCCCCEEee
Confidence 677788899999999999886554
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.43 E-value=0.23 Score=46.20 Aligned_cols=134 Identities=12% Similarity=0.055 Sum_probs=85.9
Q ss_pred ceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cC
Q 010256 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DD 253 (514)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d 253 (514)
...|-+.+.-+ +.++.+..+..|| -... ........+...+++|+.++..++.. ..
T Consensus 39 ~~~w~~e~~nl------------avaca~tiv~~YD-~agq---------~~le~n~tg~aldm~wDkegdvlavlAek~ 96 (615)
T KOG2247|consen 39 IHRWRPEGHNL------------AVACANTIVIYYD-KAGQ---------VILELNPTGKALDMAWDKEGDVLAVLAEKT 96 (615)
T ss_pred eeeEecCCCce------------ehhhhhhHHHhhh-hhcc---------eecccCCchhHhhhhhccccchhhhhhhcC
Confidence 45677777666 7888888888777 1110 00112233555678888888776654 78
Q ss_pred CeEEEEeccCCCceeeeeccCCCcccc-cCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCC
Q 010256 254 LRINLWNLEISNQSFNIVDVKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 332 (514)
Q Consensus 254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 332 (514)
+.+.+||+.+.... .++. ....-.=+.|++.. ..++.+...|.+.+++..+.+...
T Consensus 97 ~piylwd~n~eytq---------qLE~gg~~s~sll~wsKg~-~el~ig~~~gn~viynhgtsR~ii------------- 153 (615)
T KOG2247|consen 97 GPIYLWDVNSEYTQ---------QLESGGTSSKSLLAWSKGT-PELVIGNNAGNIVIYNHGTSRRII------------- 153 (615)
T ss_pred CCeeechhhhhhHH---------HHhccCcchHHHHhhccCC-ccccccccccceEEEeccchhhhh-------------
Confidence 99999999854322 1111 11111226788877 788888899999999988765421
Q ss_pred ccceeec-cccceeEEEEecCCCEEEE
Q 010256 333 TRSFFTE-IIASISDIKFARNGRHILS 358 (514)
Q Consensus 333 ~~~~~~~-~~~~i~~~~~s~~g~~l~~ 358 (514)
..| |...++++++.+.+..+..
T Consensus 154 ----v~Gkh~RRgtq~av~lEd~vil~ 176 (615)
T KOG2247|consen 154 ----VMGKHQRRGTQIAVTLEDYVILC 176 (615)
T ss_pred ----hhcccccceeEEEecccceeeec
Confidence 122 5567888999887766554
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=84.18 E-value=56 Score=33.88 Aligned_cols=111 Identities=15% Similarity=0.175 Sum_probs=62.6
Q ss_pred CeEEEEECCCCCEEEEe-c-----CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC----
Q 010256 235 HINSISNNSDGETFISA-D-----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---- 304 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~-~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d---- 304 (514)
.+..+.++|++++|+.+ + ...|++.|+.++..... .+.+ .-..++|.+|+ ..|+....+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~-------~i~~---~~~~~~w~~D~-~~~~y~~~~~~~~ 196 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE-------LLDN---VEPSFVWANDS-WTFYYVRKHPVTL 196 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc-------cccC---cceEEEEeeCC-CEEEEEEecCCCC
Confidence 45678899999999876 3 33588888875542211 1111 11569999998 444444332
Q ss_pred --CeEEEEEcCCCccccccccceeccCCCCccceeecccccee-EEEEecCCCEEEEE--e--CCeEEEEEcc
Q 010256 305 --GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS-DIKFARNGRHILSR--D--YMTLKLWDIN 370 (514)
Q Consensus 305 --g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~s~~g~~l~~~--~--~~~i~iwd~~ 370 (514)
..|..+++.++.... ...++... .... .+..+.++++++.. + ++.+.+++..
T Consensus 197 ~~~~v~~h~lgt~~~~d--~lv~~e~~------------~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 197 LPYQVWRHTIGTPASQD--ELVYEEKD------------DTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred CCCEEEEEECCCChhHC--eEEEeeCC------------CCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 356667776653211 22233221 1122 33344488877653 2 2688888864
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=83.61 E-value=3.9 Score=23.34 Aligned_cols=29 Identities=10% Similarity=0.153 Sum_probs=19.9
Q ss_pred cccceEEEEEcCCCCeEEEec-CC--CeEEEE
Q 010256 34 EVDIISAIEFDKSGDHLATGD-RG--GRVVLF 62 (514)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~-~d--g~i~iw 62 (514)
....-.+..|||||++|+..+ .+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 345677899999999888765 34 555555
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.38 E-value=30 Score=37.37 Aligned_cols=161 Identities=15% Similarity=0.169 Sum_probs=81.5
Q ss_pred EecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEE--------EecCCCcEEEEEecCCeEEEEEcCCCcccccc
Q 010256 250 SADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAE--------FHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH 321 (514)
Q Consensus 250 s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~--------~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 321 (514)
..-|..+.+|+.++++... .+.+....|..+. |.|.=..+|+. +.--.|.++-+.-......
T Consensus 95 iTiDn~L~lWny~~~~e~~--------~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvv-aT~~ei~ilgV~~~~~~~~- 164 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELA--------EYDGLSHTILKVGLVKPKPGVFVPEIQHLLVV-ATPVEIVILGVSFDEFTGE- 164 (1311)
T ss_pred EEeCCeEEEEEcCCCCccc--------cccchhhhheeeeeecCCCCcchhhhheeEEe-cccceEEEEEEEeccccCc-
Confidence 3467889999999755442 2334444455443 22332123333 3344566655433222111
Q ss_pred ccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCC------C-ceeeeeecc---cccccccc
Q 010256 322 SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDS------G-PVATFQVHE---HLRPKLCD 391 (514)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~------~-~~~~~~~~~---~~~~~~~~ 391 (514)
...|... -.+......|.++....+|+.+++|.+| .+|.+.... + +-+.-.... ...+.+..
T Consensus 165 ~~~f~~~------~~i~~dg~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~ 236 (1311)
T KOG1900|consen 165 LSIFNTS------FKISVDGVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLS 236 (1311)
T ss_pred ccccccc------eeeecCCceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhc
Confidence 0111100 0011112468899988899999999887 566553210 0 000000000 00111111
Q ss_pred ccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCC
Q 010256 392 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 392 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 429 (514)
+. ....-.|..+.+....+.|.+-+..|.|.+|++..
T Consensus 237 ~~-~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 237 VP-GSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CC-CCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 11 00111234788887777888999999999999986
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=83.07 E-value=6.2 Score=22.77 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=22.0
Q ss_pred cCCCEEEEEe--CCeEEEEEccCCCCceeeeeec
Q 010256 351 RNGRHILSRD--YMTLKLWDINMDSGPVATFQVH 382 (514)
Q Consensus 351 ~~g~~l~~~~--~~~i~iwd~~~~~~~~~~~~~~ 382 (514)
|+++.|+++. +++|.++|..+ .+.+..+...
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~-~~~~~~i~vg 33 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTAT-NKVIATIPVG 33 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCC-CeEEEEEECC
Confidence 5677777653 38999999986 6666666553
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.14 E-value=13 Score=39.96 Aligned_cols=79 Identities=22% Similarity=0.346 Sum_probs=52.9
Q ss_pred ccCeEEEEECCCCCEEEEecCCeEEEEecc--CC-----Cceeeeec-------cCC--Cccc-ccCCceEEEEEecCCC
Q 010256 233 DYHINSISNNSDGETFISADDLRINLWNLE--IS-----NQSFNIVD-------VKP--ANME-DLTEVITSAEFHPTHC 295 (514)
Q Consensus 233 ~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~--~~-----~~~~~~~~-------~~~--~~~~-~~~~~i~~v~~~p~~~ 295 (514)
...|+++....+|+.+.+|.|| .+|.+. .. +.+.++.- +-| ..+. .+.++|..++.....
T Consensus 178 g~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR- 254 (1311)
T KOG1900|consen 178 GVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR- 254 (1311)
T ss_pred CceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc-
Confidence 3567888888899999999666 444432 11 11111100 001 1223 567799999998876
Q ss_pred cEEEEEecCCeEEEEEcCC
Q 010256 296 NMLAYSSSKGSIRLIDMRQ 314 (514)
Q Consensus 296 ~~l~~~~~dg~i~~wd~~~ 314 (514)
+++.+-+..|.|.+||+..
T Consensus 255 ~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeeeccCceEEEEEccC
Confidence 8999999999999999977
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.12 E-value=0.24 Score=46.13 Aligned_cols=144 Identities=10% Similarity=0.064 Sum_probs=89.9
Q ss_pred ceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEE-EeC-
Q 010256 284 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS-RDY- 361 (514)
Q Consensus 284 ~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~- 361 (514)
......|-|.+. -++.++.+..+..||-...... . .. ..+....++|..++..++. +..
T Consensus 36 ~pi~~~w~~e~~-nlavaca~tiv~~YD~agq~~l-e------~n-----------~tg~aldm~wDkegdvlavlAek~ 96 (615)
T KOG2247|consen 36 GPIIHRWRPEGH-NLAVACANTIVIYYDKAGQVIL-E------LN-----------PTGKALDMAWDKEGDVLAVLAEKT 96 (615)
T ss_pred ccceeeEecCCC-ceehhhhhhHHHhhhhhcceec-c------cC-----------CchhHhhhhhccccchhhhhhhcC
Confidence 344566888874 4777888888888885432211 1 00 0134556778887777665 333
Q ss_pred CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCC
Q 010256 362 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASK 441 (514)
Q Consensus 362 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 441 (514)
+.+.+||+.+.....-...+.... . -..|++....++.+...|.+.|++..+.... ...-.|.
T Consensus 97 ~piylwd~n~eytqqLE~gg~~s~-s---------------ll~wsKg~~el~ig~~~gn~viynhgtsR~i-iv~Gkh~ 159 (615)
T KOG2247|consen 97 GPIYLWDVNSEYTQQLESGGTSSK-S---------------LLAWSKGTPELVIGNNAGNIVIYNHGTSRRI-IVMGKHQ 159 (615)
T ss_pred CCeeechhhhhhHHHHhccCcchH-H---------------HHhhccCCccccccccccceEEEeccchhhh-hhhcccc
Confidence 899999998622211111111110 0 2578888888999989999999998765332 2333388
Q ss_pred cceeEEEECCCCCceeecCCCCe
Q 010256 442 NPMRRQVQTPSRPSRPLGSLSGV 464 (514)
Q Consensus 442 ~~v~~~~~~~~~~~l~s~s~d~~ 464 (514)
.++.+.++.+.+..+ .++.|..
T Consensus 160 RRgtq~av~lEd~vi-l~dcd~~ 181 (615)
T KOG2247|consen 160 RRGTQIAVTLEDYVI-LCDCDNT 181 (615)
T ss_pred cceeEEEecccceee-ecCcHHH
Confidence 899999998876543 3344433
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=81.96 E-value=35 Score=29.96 Aligned_cols=114 Identities=15% Similarity=0.084 Sum_probs=67.1
Q ss_pred CceEEEEEecCCCcEEEEEecCC--eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe
Q 010256 283 EVITSAEFHPTHCNMLAYSSSKG--SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD 360 (514)
Q Consensus 283 ~~i~~v~~~p~~~~~l~~~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~ 360 (514)
.....+.|..++ .++-+.+.-| .|+.+|+.+++... ..+.+. . -.--.++...|.-+.++=.
T Consensus 45 aFTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~----~~~l~~-----~------~FgEGit~~~d~l~qLTWk 108 (264)
T PF05096_consen 45 AFTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQ----SVPLPP-----R------YFGEGITILGDKLYQLTWK 108 (264)
T ss_dssp -EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEE----EEE-TT-----T--------EEEEEEETTEEEEEESS
T ss_pred ccCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEE----EEECCc-----c------ccceeEEEECCEEEEEEec
Confidence 345678887777 7878877766 69999999987531 111111 0 1122333433322333334
Q ss_pred CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCc
Q 010256 361 YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 431 (514)
Q Consensus 361 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 431 (514)
++...+||..+ -+.+.++....+. +.++ .|++.|+.......++++|.++.+
T Consensus 109 ~~~~f~yd~~t-l~~~~~~~y~~EG----------------WGLt--~dg~~Li~SDGS~~L~~~dP~~f~ 160 (264)
T PF05096_consen 109 EGTGFVYDPNT-LKKIGTFPYPGEG----------------WGLT--SDGKRLIMSDGSSRLYFLDPETFK 160 (264)
T ss_dssp SSEEEEEETTT-TEEEEEEE-SSS------------------EEE--ECSSCEEEE-SSSEEEEE-TTT-S
T ss_pred CCeEEEEcccc-ceEEEEEecCCcc----------------eEEE--cCCCEEEEECCccceEEECCcccc
Confidence 58999999987 7777777654322 1566 467777766677899999987653
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=81.21 E-value=31 Score=29.99 Aligned_cols=113 Identities=11% Similarity=0.095 Sum_probs=56.7
Q ss_pred eeEEEEecCCCEEEEEeC----CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCC
Q 010256 344 ISDIKFARNGRHILSRDY----MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 419 (514)
Q Consensus 344 i~~~~~s~~g~~l~~~~~----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 419 (514)
..+-.+-+||++|.+|++ ..+++++... ...-......... +. ...-+ -+...-|||+.|+.|+.+
T Consensus 69 CSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~-~~~~~~w~e~~~~---m~----~~RWY--pT~~~L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 69 CSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCT-SDGTCDWTESPND---MQ----SGRWY--PTATTLPDGRVLIVGGSN 138 (243)
T ss_pred ccCcCCCCCCCEEEeCCCCccccceEEEecCC-CCCCCCceECccc---cc----CCCcc--ccceECCCCCEEEEeCcC
Confidence 344456789999999753 5678877543 1111111110000 00 00000 145566899999988876
Q ss_pred C-cEEEEecCCCceeee---eecC----CCccee-EEEECCCCCceeecCCCCeEE
Q 010256 420 N-LFRVFGCSEGSAEST---TLEA----SKNPMR-RQVQTPSRPSRPLGSLSGVVR 466 (514)
Q Consensus 420 g-~i~iwd~~~~~~~~~---~~~~----~~~~v~-~~~~~~~~~~l~s~s~d~~v~ 466 (514)
. ...+|.......... .+.. .....+ .+...|+|++++.+..+..+.
T Consensus 139 ~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~ 194 (243)
T PF07250_consen 139 NPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIY 194 (243)
T ss_pred CCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEE
Confidence 5 345555422111111 1111 111122 455679999998887655444
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=80.98 E-value=38 Score=29.73 Aligned_cols=187 Identities=13% Similarity=0.028 Sum_probs=99.6
Q ss_pred cCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcC
Q 010256 234 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~ 313 (514)
..-..|...|||..-++-....|.-.|.++.+.. .+.+ ..+..........|.+.| ++-.++... .---.|..
T Consensus 104 a~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt--~f~l---p~~~a~~nlet~vfD~~G-~lWFt~q~G-~yGrLdPa 176 (353)
T COG4257 104 ASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVT--RFPL---PLEHADANLETAVFDPWG-NLWFTGQIG-AYGRLDPA 176 (353)
T ss_pred CCCceEEECCCCCeeEecCcceeEEecCcccceE--Eeec---ccccCCCcccceeeCCCc-cEEEeeccc-cceecCcc
Confidence 3445666777776555432224555555433221 1111 223335667788999999 777776532 11111211
Q ss_pred CCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccc
Q 010256 314 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDL 392 (514)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 392 (514)
.+. +++|..+.. ..-..++..|+|..-++.- +..|-..|... + .-..+...+.......
T Consensus 177 ~~~-----i~vfpaPqG-----------~gpyGi~atpdGsvwyaslagnaiaridp~~-~-~aev~p~P~~~~~gsR-- 236 (353)
T COG4257 177 RNV-----ISVFPAPQG-----------GGPYGICATPDGSVWYASLAGNAIARIDPFA-G-HAEVVPQPNALKAGSR-- 236 (353)
T ss_pred cCc-----eeeeccCCC-----------CCCcceEECCCCcEEEEeccccceEEccccc-C-CcceecCCCccccccc--
Confidence 111 233333221 3457788899999888742 24455555443 2 1122222111111000
Q ss_pred cccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCcee
Q 010256 393 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP 457 (514)
Q Consensus 393 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 457 (514)
.+--+|.|+.-++-...+.++-||........-.|.+....-.++.....++.-.
T Consensus 237 ----------riwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~ 291 (353)
T COG4257 237 ----------RIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWL 291 (353)
T ss_pred ----------ccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEe
Confidence 4556678888888777788999998876666566666666666666655555443
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=80.85 E-value=66 Score=32.42 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=17.1
Q ss_pred cCCCCeEEEecCCC------eEEEEEecCCc
Q 010256 44 DKSGDHLATGDRGG------RVVLFERTDTR 68 (514)
Q Consensus 44 s~~g~~l~tg~~dg------~i~iw~~~~~~ 68 (514)
+..+.+++.|+.++ .+..||..++.
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~ 312 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNE 312 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCc
Confidence 44567788888773 57778876654
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.74 E-value=54 Score=31.72 Aligned_cols=83 Identities=11% Similarity=0.135 Sum_probs=48.6
Q ss_pred cCeEEEEECCCCCEEEEe-cCCeEEEEeccC---------CCcee--eeeccCCCccc-ccCCceEEEEEecCC--CcEE
Q 010256 234 YHINSISNNSDGETFISA-DDLRINLWNLEI---------SNQSF--NIVDVKPANME-DLTEVITSAEFHPTH--CNML 298 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~---------~~~~~--~~~~~~~~~~~-~~~~~i~~v~~~p~~--~~~l 298 (514)
-.|..+..++.|..++-+ .+|.+.++=.+. ++..+ +.+.+...-+. ...-.+..++|+|+. ...+
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 356777788888777665 777666543221 11111 11111111111 112345678899986 4678
Q ss_pred EEEecCCeEEEEEcCCCc
Q 010256 299 AYSSSKGSIRLIDMRQSA 316 (514)
Q Consensus 299 ~~~~~dg~i~~wd~~~~~ 316 (514)
+.-+.|..||+||+....
T Consensus 184 ~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred EEEecCcEEEEEecCCcc
Confidence 888899999999997644
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=80.42 E-value=24 Score=27.11 Aligned_cols=70 Identities=14% Similarity=0.234 Sum_probs=46.1
Q ss_pred EEEecCCCcEEEEEecCCeEEEEEcCCCcccc----ccccceeccCCCCccceeeccccceeEEEEec-----CCCEEEE
Q 010256 288 AEFHPTHCNMLAYSSSKGSIRLIDMRQSALCD----THSKLFEEQEAPGTRSFFTEIIASISDIKFAR-----NGRHILS 358 (514)
Q Consensus 288 v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-----~g~~l~~ 358 (514)
-.|.... .-|+.++.-|+|.|++........ ..+..+.. ...|++++-.+ +...|+.
T Consensus 4 GkfDG~~-pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi-------------n~~italaaG~l~~~~~~D~Lli 69 (136)
T PF14781_consen 4 GKFDGVH-PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI-------------NQEITALAAGRLKPDDGRDCLLI 69 (136)
T ss_pred EEeCCCc-eeEEEEecCCEEEEECCCccccccccccCceeEEEC-------------CCceEEEEEEecCCCCCcCEEEE
Confidence 4566666 578888889999999876543211 11222222 24577776544 4568888
Q ss_pred EeCCeEEEEEccC
Q 010256 359 RDYMTLKLWDINM 371 (514)
Q Consensus 359 ~~~~~i~iwd~~~ 371 (514)
|+...+..||+..
T Consensus 70 Gt~t~llaYDV~~ 82 (136)
T PF14781_consen 70 GTQTSLLAYDVEN 82 (136)
T ss_pred eccceEEEEEccc
Confidence 9989999999986
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=80.21 E-value=86 Score=33.34 Aligned_cols=33 Identities=9% Similarity=0.067 Sum_probs=28.0
Q ss_pred cccceEEEEEcCCC------CeEEEecCCCeEEEEEecC
Q 010256 34 EVDIISAIEFDKSG------DHLATGDRGGRVVLFERTD 66 (514)
Q Consensus 34 h~~~V~~~~~s~~g------~~l~tg~~dg~i~iw~~~~ 66 (514)
-+..|.|+++.++. ++++.|+.|+.+++..+..
T Consensus 581 l~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p 619 (1205)
T KOG1898|consen 581 LSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDP 619 (1205)
T ss_pred eceeehhhccCCCCcchhhcceeeeeccccceeEEEecC
Confidence 35789999999865 5799999999999999873
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 514 | ||||
| 3dw8_B | 447 | Structure Of A Protein Phosphatase 2a Holoenzyme Wi | 1e-126 |
| >pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55 Subunit Length = 447 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 514 | |||
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.98 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.98 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.97 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.97 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.97 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.97 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.97 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.97 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.96 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.95 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.95 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.95 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.95 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.94 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.94 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.93 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.93 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.92 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.91 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.91 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.91 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.9 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.9 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.9 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.9 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.9 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.89 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.89 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.88 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.88 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.88 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.88 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.88 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.87 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.86 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.86 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.85 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.85 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.85 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.85 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.84 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.84 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.83 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.81 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.8 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.79 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.78 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.77 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.77 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.76 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.76 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.76 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.75 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.71 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.7 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.7 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.69 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.68 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.67 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.67 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.66 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.65 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.64 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.63 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.63 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.62 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.61 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.6 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.58 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.58 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.57 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.57 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.57 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.56 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.54 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.53 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.52 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.49 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.48 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.48 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.47 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.47 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.47 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.47 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.44 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.42 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.42 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.37 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.37 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.36 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.33 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.31 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.31 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.31 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.31 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.3 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.29 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.28 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.24 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.24 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.23 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.23 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.22 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.21 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.15 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.13 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.12 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.1 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.06 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.98 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.96 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.96 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.95 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.94 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.87 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.85 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.84 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.84 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.75 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.71 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.7 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.69 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.69 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.68 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.64 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.63 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.61 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.61 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.58 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.54 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.53 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.5 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.49 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.43 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.42 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.4 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.38 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.36 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.34 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.33 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.31 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.31 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.29 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.27 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.26 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.24 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.23 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.23 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.2 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.17 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.17 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.15 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.09 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.07 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.03 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.02 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.95 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.95 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.94 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.92 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.89 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.88 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.84 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.81 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.81 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.8 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.72 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.71 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.63 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.6 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.58 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.53 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.49 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.37 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.36 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.34 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.33 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.3 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.06 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.0 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 96.99 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 96.98 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.97 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 96.92 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.77 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.75 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 96.69 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 96.66 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.48 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.32 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.31 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 96.26 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 96.17 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 96.13 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 95.95 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.94 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 95.91 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 95.9 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 95.88 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 95.48 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 94.96 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 94.92 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 94.85 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 94.79 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 94.43 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 94.32 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 94.02 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 92.47 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 92.3 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 92.18 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 91.98 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 91.23 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 90.64 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 88.6 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 88.18 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 86.71 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 86.0 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 83.99 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 82.97 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 82.01 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 80.84 |
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-50 Score=400.84 Aligned_cols=406 Identities=15% Similarity=0.166 Sum_probs=294.2
Q ss_pred cccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccc
Q 010256 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (514)
Q Consensus 30 ~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (514)
...+|.+.|++++|+|+|++||+|+.||+|+|||+.+++.. ....+.+|.
T Consensus 54 ~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~---------------------~~~~~~~~~--------- 103 (611)
T 1nr0_A 54 IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI---------------------LKTTIPVFS--------- 103 (611)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC---------------------EEEEEECSS---------
T ss_pred EecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcce---------------------eeEeecccC---------
Confidence 34589999999999999999999999999999998654421 345677887
Q ss_pred ccccceeEEEEeeCCCCcEEEEeeCC----CeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCc
Q 010256 110 EIEEKINKIRWCQSANSALYLLSTND----KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~~d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 185 (514)
..|.+++| ++++++|++++.+ +.|++||.. +....+..+ ...|. .++|+|++..
T Consensus 104 ---~~v~~v~f--s~dg~~l~~~~~~~~~~~~v~~wd~~--~~~~~l~gh--------~~~v~-------~v~f~p~~~~ 161 (611)
T 1nr0_A 104 ---GPVKDISW--DSESKRIAAVGEGRERFGHVFLFDTG--TSNGNLTGQ--------ARAMN-------SVDFKPSRPF 161 (611)
T ss_dssp ---SCEEEEEE--CTTSCEEEEEECCSSCSEEEEETTTC--CBCBCCCCC--------SSCEE-------EEEECSSSSC
T ss_pred ---CceEEEEE--CCCCCEEEEEECCCCceeEEEEeeCC--CCcceecCC--------CCCce-------EEEECCCCCe
Confidence 88999999 5678899988765 478888743 222222211 34455 8899999874
Q ss_pred -cccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccC
Q 010256 186 -GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEI 263 (514)
Q Consensus 186 -l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~ 263 (514)
+ ++++.|++|++|| ... .++... +.+|...|.+++|+|++++|+++ .|++|++||+.+
T Consensus 162 ~l------------~s~s~D~~v~lwd-~~~------~~~~~~-l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~ 221 (611)
T 1nr0_A 162 RI------------ISGSDDNTVAIFE-GPP------FKFKST-FGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD 221 (611)
T ss_dssp EE------------EEEETTSCEEEEE-TTT------BEEEEE-ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EE------------EEEeCCCeEEEEE-CCC------CeEeee-eccccCceEEEEECCCCCEEEEEECCCcEEEEECCC
Confidence 6 9999999999999 222 223333 37899999999999999999999 999999999986
Q ss_pred CCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccc---------------------
Q 010256 264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS--------------------- 322 (514)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~--------------------- 322 (514)
++....+ ........+|...|.+++|+|++ .+|++++.|++|++||+++++......
T Consensus 222 g~~~~~~-~~~~~~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 299 (611)
T 1nr0_A 222 GTKTGVF-EDDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVS 299 (611)
T ss_dssp CCEEEEC-BCTTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEE
T ss_pred CcEeeee-ccccccccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEE
Confidence 6543221 00001122699999999999999 899999999999999999876532100
Q ss_pred -------cceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeee-eecccccccc----
Q 010256 323 -------KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATF-QVHEHLRPKL---- 389 (514)
Q Consensus 323 -------~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~-~~~~~~~~~~---- 389 (514)
+.++.. .......+.+|...|.+++|+|+|++|++++. ++|++||+.+ +.....+ ..|...+..+
T Consensus 300 ~s~d~~i~~~~~~-~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~-~~~~~~~~~~h~~~v~~~~~s~ 377 (611)
T 1nr0_A 300 ISANGFINFVNPE-LGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST-GISNRVFPDVHATMITGIKTTS 377 (611)
T ss_dssp EETTCCEEEEETT-TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEECSSCSCSSCEEEEEECT
T ss_pred EeCCCcEEEEeCC-CCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC-CceeeecccCCcceEEEEEECC
Confidence 001100 00112345689999999999999999999864 9999999986 4433222 1111100000
Q ss_pred ---------------------------------------ccccccC-----------------------CccceeeEEEc
Q 010256 390 ---------------------------------------CDLYEND-----------------------SIFDKFECCLS 407 (514)
Q Consensus 390 ---------------------------------------~~~~~~~-----------------------~~~~v~~~~~s 407 (514)
..+...+ .-..+.+++|+
T Consensus 378 ~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~s 457 (611)
T 1nr0_A 378 KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALS 457 (611)
T ss_dssp TSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEEC
T ss_pred CCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEe
Confidence 0000000 01235689999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCc-cc-cc
Q 010256 408 GDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGN-AF-DF 485 (514)
Q Consensus 408 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~-~~-~~ 485 (514)
|||++|++|+.|+.|++||+.++........+|...|.+++|+|++++|++++.|++|++.+-.... ++... .. .|
T Consensus 458 pdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~--~~~~~~~~~~H 535 (611)
T 1nr0_A 458 NDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF--ELAHTNSWTFH 535 (611)
T ss_dssp TTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT--EESCCCCCCCC
T ss_pred CCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC--ceeeeeeeeec
Confidence 9999999999999999999987633222237899999999999999999999999999994322101 11111 22 38
Q ss_pred ccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 486 SMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 486 ~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
...|.+++|+||+++||+++ ++.+++|.
T Consensus 536 ~~~V~~v~fspdg~~lasgs~D~~v~lW~ 564 (611)
T 1nr0_A 536 TAKVACVSWSPDNVRLATGSLDNSVIVWN 564 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ccceeEEEECCCCCEEEEEECCCcEEEEE
Confidence 99999999999999999988 66789996
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-50 Score=385.78 Aligned_cols=439 Identities=55% Similarity=0.915 Sum_probs=322.7
Q ss_pred ccccccccchhhccccCcccccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccc
Q 010256 11 AAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF 90 (514)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (514)
...+..|+|.|+|++. .+.++|.+.|++++|+|+|++||+|+.||.|+||++.+++... ....+++
T Consensus 6 ~~~~~~w~~~q~~~~~--~~~~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~------------~~~~~~~ 71 (447)
T 3dw8_B 6 GGNDIQWCFSQVKGAV--DDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQ------------SHSRGEY 71 (447)
T ss_dssp --CCCCCEEEECCSCS--SSCCCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----------------CCCCCCE
T ss_pred CCcceeEEEEEecccc--cccccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCC------------cccccce
Confidence 3467899999999974 3468899999999999999999999999999999998765310 0112345
Q ss_pred eeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecc
Q 010256 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (514)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (514)
+....+.+|.+++++++++.+.+.|++++|+|..+..+|++++.|+.|++||+.+++..... .....
T Consensus 72 ~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~-~~~~~------------ 138 (447)
T 3dw8_B 72 NVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEG-YNLKE------------ 138 (447)
T ss_dssp EEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEEC-CSCC-------------
T ss_pred eEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcce-ecccC------------
Confidence 56788999999999999999999999999976543369999999999999999877643211 11000
Q ss_pred cccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEE
Q 010256 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 250 (514)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 250 (514)
.+|.. ........+.+.. ....+......+.+.+..+|...|.+++|+|++++|++
T Consensus 139 ----------~~g~~-------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 194 (447)
T 3dw8_B 139 ----------EDGRY-------------RDPTTVTTLRVPV-FRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLS 194 (447)
T ss_dssp ------------------------------CCCCCSCCCCE-EEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEE
T ss_pred ----------ccccc-------------cCcccccceEecc-ccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEE
Confidence 00100 0000001111111 11111111223334445789999999999999999999
Q ss_pred ecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCC
Q 010256 251 ADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (514)
Q Consensus 251 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 330 (514)
|.|+.|++||+++......++..++..+.+|...|.+++|+|+++++|++|+.||.|++||+++++........+..+..
T Consensus 195 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 274 (447)
T 3dw8_B 195 ADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPED 274 (447)
T ss_dssp ECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC--
T ss_pred eCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCC
Confidence 99999999999866666666666666788899999999999997679999999999999999998865554566776665
Q ss_pred CCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCC
Q 010256 331 PGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 410 (514)
Q Consensus 331 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 410 (514)
+.....+.+|...|.+++|+|+|++|++++++.|++||++..++++..+..|......++..+..+.+++++.++|+|++
T Consensus 275 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~ 354 (447)
T 3dw8_B 275 PSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSD 354 (447)
T ss_dssp ---CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTS
T ss_pred ccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCC
Confidence 55555666777899999999999999998779999999986588899999998777767777777777777789999999
Q ss_pred CEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceE
Q 010256 411 GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLL 490 (514)
Q Consensus 411 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~ 490 (514)
++|++|+.||.|++||+.+++. ..++.+..+.......+..+....+.. ..........++...|.
T Consensus 355 ~~l~s~s~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~i~ 420 (447)
T 3dw8_B 355 SVVMTGSYNNFFRMFDRNTKRD--ITLEASRENNKPRTVLKPRKVCASGKR------------KKDEISVDSLDFNKKIL 420 (447)
T ss_dssp SEEEEECSTTEEEEEETTTCCE--EEEECCSTTCCTTCBCCCCCEECSSCC------------CTTCEEGGGCCTTSCCC
T ss_pred CEEEEeccCCEEEEEEcCCCcc--eeeeecccccccccccCCccccccCCc------------ccccccccccccCCcee
Confidence 9999999999999999998744 366666665543333333332222211 11122233445788999
Q ss_pred EEEEcCCCCEEEEEecCcEEEEeC
Q 010256 491 HLAWHPSENSIACAASNSLYMYYA 514 (514)
Q Consensus 491 ~~~~spd~~~l~~~~~~~~~i~~~ 514 (514)
+++|+|++++||+++.+++++|++
T Consensus 421 ~~~~~p~~~~la~~~~~~~~~~~~ 444 (447)
T 3dw8_B 421 HTAWHPKENIIAVATTNNLYIFQD 444 (447)
T ss_dssp EEEECSSSSEEEEECSSCEEEEEC
T ss_pred EEEECCCCCEEEEEecceeeeecc
Confidence 999999999999999999999985
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-46 Score=376.20 Aligned_cols=395 Identities=15% Similarity=0.203 Sum_probs=291.1
Q ss_pred ccccccceEEEEEcCCCC-eEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccc
Q 010256 31 EVQEVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~-~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (514)
..+|.+.|++++|+|++. +|++|+.|++|++||..+.+ ....+.+|.
T Consensus 143 l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~-----------------------~~~~l~~H~--------- 190 (611)
T 1nr0_A 143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK-----------------------FKSTFGEHT--------- 190 (611)
T ss_dssp CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE-----------------------EEEEECCCS---------
T ss_pred ecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe-----------------------Eeeeecccc---------
Confidence 458999999999999987 59999999999999976443 456788998
Q ss_pred ccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
..|.+++| ++++++|++++.|++|++||+.+++....+.... .......+.|. .++|+|+|+.+
T Consensus 191 ---~~V~~v~f--spdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~-~~~~~h~~~V~-------~v~~spdg~~l--- 254 (611)
T 1nr0_A 191 ---KFVHSVRY--NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS-LKNVAHSGSVF-------GLTWSPDGTKI--- 254 (611)
T ss_dssp ---SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCCEEEECBCTT-SSSCSSSSCEE-------EEEECTTSSEE---
T ss_pred ---CceEEEEE--CCCCCEEEEEECCCcEEEEECCCCcEeeeecccc-ccccccCCCEE-------EEEECCCCCEE---
Confidence 88999999 5678899999999999999999887665542110 00001234555 89999999998
Q ss_pred cCCCCCCcccCCCCCCcEEeceeecccccccc-------------------------------------ccccccccccC
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLV-------------------------------------AGCRRIYAHAH 232 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~-------------------------------------~~~~~~~~~~h 232 (514)
++++.|++|++|| +...+.... ..+.. .+.+|
T Consensus 255 ---------~s~s~D~~v~lWd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~-~~~gh 323 (611)
T 1nr0_A 255 ---------ASASADKTIKIWN-VATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQ-VRYGH 323 (611)
T ss_dssp ---------EEEETTSEEEEEE-TTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEE-EECCC
T ss_pred ---------EEEeCCCeEEEEe-CCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcce-EEcCC
Confidence 9999999999999 432211000 00111 23689
Q ss_pred ccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEE
Q 010256 233 DYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (514)
Q Consensus 233 ~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd 311 (514)
...|.+++|+|++++|+++ .|++|++||+.++.... . ...+|...|.+++|++++ .+++++.|+.+++|+
T Consensus 324 ~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~-~------~~~~h~~~v~~~~~s~~~--~l~s~s~d~~v~~w~ 394 (611)
T 1nr0_A 324 NKAITALSSSADGKTLFSADAEGHINSWDISTGISNR-V------FPDVHATMITGIKTTSKG--DLFTVSWDDHLKVVP 394 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE-C------SSCSCSSCEEEEEECTTS--CEEEEETTTEEEEEC
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceee-e------cccCCcceEEEEEECCCC--cEEEEEcCCceEEee
Confidence 9999999999999999999 99999999998654332 1 125688999999999875 688999999999999
Q ss_pred cCCCccccccc---------cceeccCC----------------CCccceeeccccceeEEEEecCCCEEEEEeC-CeEE
Q 010256 312 MRQSALCDTHS---------KLFEEQEA----------------PGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLK 365 (514)
Q Consensus 312 ~~~~~~~~~~~---------~~~~~~~~----------------~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~ 365 (514)
+..+....... ..+..... ......+ .|...+.+++|+|+|++|++|+. ++|+
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~-~~~~~v~~va~spdg~~lasgs~D~~v~ 473 (611)
T 1nr0_A 395 AGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV-PISYNSSCVALSNDKQFVAVGGQDSKVH 473 (611)
T ss_dssp SSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE-ECSSCEEEEEECTTSCEEEEEETTSEEE
T ss_pred cCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeee-ecCCCceEEEEeCCCCEEEEeCCCCeEE
Confidence 87654221000 00000000 0000111 25567899999999999999865 9999
Q ss_pred EEEccCCCCc--eeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeee--ecCCC
Q 010256 366 LWDINMDSGP--VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTT--LEASK 441 (514)
Q Consensus 366 iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~ 441 (514)
+||+.. +.. +.. ..|... |.+++|+|||++|++++.|+.|++|++.+....... +.+|.
T Consensus 474 lwd~~~-~~~~~~~~-~~h~~~---------------v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~ 536 (611)
T 1nr0_A 474 VYKLSG-ASVSEVKT-IVHPAE---------------ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHT 536 (611)
T ss_dssp EEEEET-TEEEEEEE-EECSSC---------------EEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCS
T ss_pred EEEccC-Cceeeeec-cCCCCc---------------eEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecc
Confidence 999985 322 122 344433 459999999999999999999999999873233332 44599
Q ss_pred cceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccC-Cccccc-ccceEEEEEcCCCCEEEEEe-cCcEEEEeC
Q 010256 442 NPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDAN-GNAFDF-SMKLLHLAWHPSENSIACAA-SNSLYMYYA 514 (514)
Q Consensus 442 ~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~-~~~~~~-~~~v~~~~~spd~~~l~~~~-~~~~~i~~~ 514 (514)
..|.+++|+|++++|++++.|++|++.+-.... ... .....| ...|.+++|+||++ |++++ ++.+.+|..
T Consensus 537 ~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~--~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 537 AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS--DHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTCTT--SCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEEC
T ss_pred cceeEEEECCCCCEEEEEECCCcEEEEECCCcc--cccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEec
Confidence 999999999999999999999999994332211 011 122357 78999999999999 77666 778899973
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-45 Score=368.78 Aligned_cols=358 Identities=18% Similarity=0.295 Sum_probs=292.0
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
...|...|.+++|+|++++|++++.|+.|++|+... + ....+.+|.
T Consensus 217 ~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~-~-----------------------~~~~~~~~~---------- 262 (577)
T 2ymu_A 217 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-Q-----------------------LLQTLTGHS---------- 262 (577)
T ss_dssp EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS-C-----------------------EEEEECCCS----------
T ss_pred EecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC-C-----------------------EEEEEecCC----------
Confidence 347899999999999999999999999999999532 2 345677887
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|++++| .+++..+++++.|+.|++|+..... ......+ .+.+. .++++|+++.+
T Consensus 263 --~~v~~v~~--~~d~~~l~~~~~d~~i~~w~~~~~~-~~~~~~h--------~~~v~-------~~~~~~~~~~l---- 318 (577)
T 2ymu_A 263 --SSVNGVAF--RPDGQTIASASDDKTVKLWNRNGQL-LQTLTGH--------SSSVW-------GVAFSPDGQTI---- 318 (577)
T ss_dssp --SCEEEEEE--CTTSSEEEEEETTSCEEEEETTSCE-EEEECCC--------SSCEE-------EEEECTTSSEE----
T ss_pred --CCEEEEEE--cCCCCEEEEEeCCCEEEEEeCCCcE-EEEEecC--------CCCeE-------EEEECCCCCEE----
Confidence 88999999 5678899999999999999976543 3333322 23444 78999999998
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
++++.++.+++|+ ....+ ... +.+|...|.+++|+|++++|+++ .|+.|++||.. ++.. .
T Consensus 319 --------~t~~~d~~i~~w~-~~~~~-------~~~-~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~~~~-~ 379 (577)
T 2ymu_A 319 --------ASASDDKTVKLWN-RNGQH-------LQT-LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLL-Q 379 (577)
T ss_dssp --------EEEETTSCEEEEE-TTSCE-------EEE-ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-CCEE-E
T ss_pred --------EEEeCCCeEEEEe-CCCCe-------eEE-EeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-CCEE-E
Confidence 9999999999999 32211 122 36889999999999999999999 99999999965 3322 2
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
.+.+|...|.+++|+|++ ++|++++.|+.|++||.. ++. .. .+.+|...|.+++|
T Consensus 380 -------~~~~~~~~v~~~~~s~dg-~~l~~~~~d~~v~~~~~~-~~~----~~------------~~~~~~~~v~~~~~ 434 (577)
T 2ymu_A 380 -------TLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRN-GQL----LQ------------TLTGHSSSVWGVAF 434 (577)
T ss_dssp -------EEECCSSCEEEEEECTTS-SCEEEEETTSEEEEECTT-CCE----EE------------EEECCSSCEEEEEE
T ss_pred -------EecCCCCCeEEEEECCCC-CEEEEEeCCCEEEEEeCC-CCE----EE------------EecCCCCCeEEEEE
Confidence 456789999999999999 899999999999999964 332 12 24556789999999
Q ss_pred ecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecC
Q 010256 350 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 350 s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 428 (514)
+|++++|++++. +.|++||.. ++.+..+..|... |.+++|+||+++|++++.|+.|++||..
T Consensus 435 s~d~~~l~~~~~d~~v~~w~~~--~~~~~~~~~~~~~---------------v~~~~~spd~~~las~~~d~~i~iw~~~ 497 (577)
T 2ymu_A 435 SPDDQTIASASDDKTVKLWNRN--GQLLQTLTGHSSS---------------VRGVAFSPDGQTIASASDDKTVKLWNRN 497 (577)
T ss_dssp CTTSSEEEEEETTSEEEEEETT--SCEEEEEECCSSC---------------EEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred CCCCCEEEEEcCCCEEEEEECC--CCEEEEEcCCCCC---------------EEEEEEcCCCCEEEEEeCCCEEEEEcCC
Confidence 999999999765 999999975 6778888877654 4489999999999999999999999964
Q ss_pred CCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEe-cC
Q 010256 429 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SN 507 (514)
Q Consensus 429 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~~ 507 (514)
+ .....+.+|..+|.+++|+|++++|++++.|+.|++++ ... +.......|.+.|++++|+||+++|++++ +.
T Consensus 498 -~-~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd---~~~-~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~ 571 (577)
T 2ymu_A 498 -G-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN---RNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASSDK 571 (577)
T ss_dssp -S-CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC---TTS-CEEEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred -C-CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEe---CCC-CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence 4 45578999999999999999999999999999999943 211 22233456999999999999999999888 55
Q ss_pred cEEEEe
Q 010256 508 SLYMYY 513 (514)
Q Consensus 508 ~~~i~~ 513 (514)
.+++|+
T Consensus 572 ~i~~Wd 577 (577)
T 2ymu_A 572 TVKLWN 577 (577)
T ss_dssp CEEEEC
T ss_pred EEEEeC
Confidence 688885
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-45 Score=365.70 Aligned_cols=370 Identities=17% Similarity=0.282 Sum_probs=283.1
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|+|++|||||++||+|+.|+.|+|||. +++ .+..+.+|.
T Consensus 12 L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~-----------------------~~~~l~gh~---------- 57 (577)
T 2ymu_A 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQ-----------------------LLQTLTGHS---------- 57 (577)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSC-----------------------EEEEEECCS----------
T ss_pred ECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCC-----------------------EEEEEeCCC----------
Confidence 3489999999999999999999999999999995 333 446788998
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcc----
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG---- 186 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l---- 186 (514)
..|.+++| ++++++|++++.|++|++||+... .......+. +.|. .++|+|+++.+
T Consensus 58 --~~V~~l~f--spdg~~las~~~d~~i~vWd~~~~-~~~~~~~~~--------~~v~-------~~~~s~d~~~l~~~~ 117 (577)
T 2ymu_A 58 --SSVWGVAF--SPDGQTIASASDDKTVKLWNRNGQ-LLQTLTGHS--------SSVR-------GVAFSPDGQTIASAS 117 (577)
T ss_dssp --SCEEEEEE--CTTSSEEEEEETTSCEEEEETTSC-EEEEECCCS--------SCEE-------EEEECTTSSEEEEEE
T ss_pred --CCEEEEEE--CCCCCEEEEEeCCCEEEEEECCCC-EEEEEECCC--------CCEE-------EEEECCCCCEEEEEc
Confidence 88999999 568889999999999999997543 333332221 1111 22222222221
Q ss_pred -------------------------------------ccc-----------------------------cCCCCCCcccC
Q 010256 187 -------------------------------------ERN-----------------------------FGCASNDSSFP 200 (514)
Q Consensus 187 -------------------------------------~~~-----------------------------~~~~~~~~~~~ 200 (514)
... .......++++
T Consensus 118 ~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 197 (577)
T 2ymu_A 118 DDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIAS 197 (577)
T ss_dssp TTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred CCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEE
Confidence 000 00111234478
Q ss_pred CCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCccc
Q 010256 201 PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANME 279 (514)
Q Consensus 201 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 279 (514)
++.++.|++|+ ... +.... +.+|...|.+++|+|++++|+++ .|+.|++||.. .+. .. .+.
T Consensus 198 ~~~d~~v~~w~-~~~-------~~~~~-~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~-~~-------~~~ 259 (577)
T 2ymu_A 198 ASDDKTVKLWN-RNG-------QLLQT-LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQL-LQ-------TLT 259 (577)
T ss_dssp EETTSEEEEEC-TTS-------CEEEE-EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-SCE-EE-------EEC
T ss_pred EcCCCEEEEEe-CCC-------cEEEE-EecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC-CCE-EE-------EEe
Confidence 88888999888 211 12222 36899999999999999999999 99999999975 332 22 456
Q ss_pred ccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE
Q 010256 280 DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR 359 (514)
Q Consensus 280 ~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 359 (514)
+|...|.+++|+|++ ..+++++.|+.|++||... +. .. .+.+|...|.+++|+|++++|+++
T Consensus 260 ~~~~~v~~v~~~~d~-~~l~~~~~d~~i~~w~~~~-~~----~~------------~~~~h~~~v~~~~~~~~~~~l~t~ 321 (577)
T 2ymu_A 260 GHSSSVNGVAFRPDG-QTIASASDDKTVKLWNRNG-QL----LQ------------TLTGHSSSVWGVAFSPDGQTIASA 321 (577)
T ss_dssp CCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTS-CE----EE------------EECCCSSCEEEEEECTTSSEEEEE
T ss_pred cCCCCEEEEEEcCCC-CEEEEEeCCCEEEEEeCCC-cE----EE------------EEecCCCCeEEEEECCCCCEEEEE
Confidence 789999999999999 8999999999999999653 22 11 245677899999999999999997
Q ss_pred eC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeec
Q 010256 360 DY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE 438 (514)
Q Consensus 360 ~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 438 (514)
+. +.|++||+. +..+..+..|... +.+++|+|++++|++++.|+.|++||.. + .....+.
T Consensus 322 ~~d~~i~~w~~~--~~~~~~~~~~~~~---------------v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~-~~~~~~~ 382 (577)
T 2ymu_A 322 SDDKTVKLWNRN--GQHLQTLTGHSSS---------------VWGVAFSPDGQTIASASDDKTVKLWNRN-G-QLLQTLT 382 (577)
T ss_dssp ETTSCEEEEETT--SCEEEEECCCSSC---------------EEEEEECTTSSEEEEEETTSEEEEEETT-C-CEEEEEE
T ss_pred eCCCeEEEEeCC--CCeeEEEeCCCCC---------------EEEEEECCCCCEEEEEeCCCEEEEEcCC-C-CEEEEec
Confidence 65 999999986 5566666666543 4489999999999999999999999965 3 4557889
Q ss_pred CCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEec-CcEEEEe
Q 010256 439 ASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS-NSLYMYY 513 (514)
Q Consensus 439 ~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~-~~~~i~~ 513 (514)
+|..+|.+++|+|++++|++++.|+.|++++.. .........|...|++++|+||+++|++++. +.+.+|+
T Consensus 383 ~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~----~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~ 454 (577)
T 2ymu_A 383 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN----GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN 454 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEECTT----CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC----CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 999999999999999999999999999994321 1222234468999999999999999998884 5577775
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=325.62 Aligned_cols=283 Identities=14% Similarity=0.225 Sum_probs=239.9
Q ss_pred ccccccceEEEEEcCC----CCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccc
Q 010256 31 EVQEVDIISAIEFDKS----GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~----g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 106 (514)
..+|.+.|++++|+|+ +++|++|+.|++|+||++.+++.. ....+.+|.
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~---------------------~~~~l~gh~------ 80 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD---------------------LQWSLEGHQ------ 80 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE---------------------EEEEECCCS------
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee---------------------eeeeeccCC------
Confidence 3489999999999985 679999999999999998765421 345678898
Q ss_pred cccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcc
Q 010256 107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (514)
Q Consensus 107 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 186 (514)
..|.+++| ++++.++++++.|++|++||+.+++.....
T Consensus 81 ------~~v~~~~~--~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~---------------------------------- 118 (321)
T 3ow8_A 81 ------LGVVSVDI--SHTLPIAASSSLDAHIRLWDLENGKQIKSI---------------------------------- 118 (321)
T ss_dssp ------SCEEEEEE--CSSSSEEEEEETTSEEEEEETTTTEEEEEE----------------------------------
T ss_pred ------CCEEEEEE--CCCCCEEEEEeCCCcEEEEECCCCCEEEEE----------------------------------
Confidence 88999999 566779999999999999999987643321
Q ss_pred ccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCC
Q 010256 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN 265 (514)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~ 265 (514)
..|...+.+++|+|++++|+++ .|+.|++|++++++
T Consensus 119 -------------------------------------------~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~ 155 (321)
T 3ow8_A 119 -------------------------------------------DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK 155 (321)
T ss_dssp -------------------------------------------ECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCS
T ss_pred -------------------------------------------eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc
Confidence 2334567789999999999999 99999999999776
Q ss_pred ceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecccccee
Q 010256 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (514)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 345 (514)
... .+..+...+.+++|+|++ ++|++|+.|+.|++||+++++.. .. +.+|..+|.
T Consensus 156 ~~~--------~~~~~~~~v~~~~~spdg-~~lasg~~dg~i~iwd~~~~~~~----~~------------~~~h~~~v~ 210 (321)
T 3ow8_A 156 KEY--------SLDTRGKFILSIAYSPDG-KYLASGAIDGIINIFDIATGKLL----HT------------LEGHAMPIR 210 (321)
T ss_dssp EEE--------EEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEE----EE------------ECCCSSCCC
T ss_pred eeE--------EecCCCceEEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEE----EE------------EcccCCcee
Confidence 543 345677889999999999 89999999999999999987652 22 445668899
Q ss_pred EEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEE
Q 010256 346 DIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 424 (514)
Q Consensus 346 ~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 424 (514)
+++|+|++++|++++. +.|++||++. ++.+..+.+|... |.+++|+|++++|++++.|+.|++
T Consensus 211 ~l~~spd~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~h~~~---------------v~~~~~sp~~~~l~s~s~D~~v~i 274 (321)
T 3ow8_A 211 SLTFSPDSQLLVTASDDGYIKIYDVQH-ANLAGTLSGHASW---------------VLNVAFCPDDTHFVSSSSDKSVKV 274 (321)
T ss_dssp EEEECTTSCEEEEECTTSCEEEEETTT-CCEEEEECCCSSC---------------EEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEEEcCCCCEEEEEcCCCeEEEEECCC-cceeEEEcCCCCc---------------eEEEEECCCCCEEEEEeCCCcEEE
Confidence 9999999999999875 9999999997 7888888888765 448999999999999999999999
Q ss_pred EecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 425 FGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 425 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
||+.+++ ...++.+|...|.+++|+|++++|++++.|+.|++
T Consensus 275 wd~~~~~-~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~v 316 (321)
T 3ow8_A 275 WDVGTRT-CVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHI 316 (321)
T ss_dssp EETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred EeCCCCE-EEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEE
Confidence 9999874 45788999999999999999999999999999999
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-44 Score=338.23 Aligned_cols=281 Identities=17% Similarity=0.265 Sum_probs=244.6
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|++++|+|++++|++|+.||.|+|||+.+++ ....+.+|.
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~-----------------------~~~~l~~h~---------- 150 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD-----------------------FERTLKGHT---------- 150 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC-----------------------CCEEECCCS----------
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------------------EEEEEeccC----------
Confidence 45899999999999999999999999999999998776 336788898
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
+.|.+++| ++++.+|++|+.|++|++||+.+++...
T Consensus 151 --~~V~~v~~--~~~~~~l~sgs~D~~i~iwd~~~~~~~~---------------------------------------- 186 (410)
T 1vyh_C 151 --DSVQDISF--DHSGKLLASCSADMTIKLWDFQGFECIR---------------------------------------- 186 (410)
T ss_dssp --SCEEEEEE--CTTSSEEEEEETTSCCCEEETTSSCEEE----------------------------------------
T ss_pred --CcEEEEEE--cCCCCEEEEEeCCCeEEEEeCCCCceeE----------------------------------------
Confidence 88999999 5677899999999999999997654221
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
. +.+|...|.+++|+|++++|++| .|++|++||++++....
T Consensus 187 ------------------------------------~-~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~- 228 (410)
T 1vyh_C 187 ------------------------------------T-MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK- 228 (410)
T ss_dssp ------------------------------------C-CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE-
T ss_pred ------------------------------------E-EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE-
Confidence 1 25788899999999999999999 99999999998765432
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
.+.+|...|.++.|+|++ .+|++|+.|+.|++||++++... . .+.+|...|.+++|
T Consensus 229 -------~~~~h~~~v~~~~~~~~g-~~l~s~s~D~~v~vwd~~~~~~~----~------------~~~~h~~~v~~~~~ 284 (410)
T 1vyh_C 229 -------TFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECK----A------------ELREHRHVVECISW 284 (410)
T ss_dssp -------EEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEE----E------------EECCCSSCEEEEEE
T ss_pred -------EEeCCCccEEEEEECCCC-CEEEEEcCCCeEEEEECCCCcee----e------------EecCCCceEEEEEE
Confidence 456789999999999999 89999999999999999887642 1 24556688999999
Q ss_pred ecC--------------------CCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcC
Q 010256 350 ARN--------------------GRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 408 (514)
Q Consensus 350 s~~--------------------g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (514)
+|+ |.+|++|+. +.|++||+++ +.++..+.+|... |.+++|+|
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~-~~~~~~~~~h~~~---------------v~~v~~~~ 348 (410)
T 1vyh_C 285 APESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST-GMCLMTLVGHDNW---------------VRGVLFHS 348 (410)
T ss_dssp CCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT-TEEEEEEECCSSC---------------EEEEEECS
T ss_pred cCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC-CceEEEEECCCCc---------------EEEEEEcC
Confidence 996 678998765 9999999997 8888888888765 34899999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 409 DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 409 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+|++|++|+.||.|++||+.+++ ...++.+|...|.+++|+|++++|++|+.|++|++
T Consensus 349 ~g~~l~s~s~D~~i~vwd~~~~~-~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~v 406 (410)
T 1vyh_C 349 GGKFILSCADDKTLRVWDYKNKR-CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 406 (410)
T ss_dssp SSSCEEEEETTTEEEEECCTTSC-CCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCc-eEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Confidence 99999999999999999998774 44788999999999999999999999999999999
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-43 Score=318.60 Aligned_cols=284 Identities=17% Similarity=0.201 Sum_probs=238.3
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|++++|+|+|++|++|+.||.|++||+.+++ ....+..|.
T Consensus 9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~-----------------------~~~~~~~~~---------- 55 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV-----------------------EVRSIQVTE---------- 55 (304)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-----------------------EEEEEECCS----------
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc-----------------------eeEEeeccC----------
Confidence 45899999999999999999999999999999998765 345677887
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|.+++|+ +++++|++++.|++|++||+.+++....
T Consensus 56 --~~v~~~~~~--~~~~~l~s~s~d~~i~vwd~~~~~~~~~--------------------------------------- 92 (304)
T 2ynn_A 56 --TPVRAGKFI--ARKNWIIVGSDDFRIRVFNYNTGEKVVD--------------------------------------- 92 (304)
T ss_dssp --SCEEEEEEE--GGGTEEEEEETTSEEEEEETTTCCEEEE---------------------------------------
T ss_pred --CcEEEEEEe--CCCCEEEEECCCCEEEEEECCCCcEEEE---------------------------------------
Confidence 889999995 5667999999999999999987753221
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
+.+|...|.+++|+|++++|++| .|++|++||+++......
T Consensus 93 --------------------------------------~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~ 134 (304)
T 2ynn_A 93 --------------------------------------FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ 134 (304)
T ss_dssp --------------------------------------EECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEE
T ss_pred --------------------------------------EeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhh
Confidence 25788899999999999999999 999999999986644432
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
.+.+|...|.+++|+|+++.+|++|+.|+.|++||++++... ..+ ..+|...+..+.|
T Consensus 135 -------~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~----~~~-----------~~~~~~~v~~~~~ 192 (304)
T 2ynn_A 135 -------TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN----FTL-----------TTGQERGVNYVDY 192 (304)
T ss_dssp -------EECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCS----EEE-----------ECCCTTCEEEEEE
T ss_pred -------hhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcc----cee-----------ccCCcCcEEEEEE
Confidence 467899999999999954489999999999999999876532 111 1234467899999
Q ss_pred ec--CCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEe
Q 010256 350 AR--NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (514)
Q Consensus 350 s~--~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 426 (514)
+| ++.+|++++. ++|++||+++ ++++.++.+|... |.+++|+|++++|++|+.||.|++||
T Consensus 193 ~~~~~~~~l~s~s~D~~i~iWd~~~-~~~~~~~~~h~~~---------------v~~~~~~p~~~~l~s~s~Dg~i~iWd 256 (304)
T 2ynn_A 193 YPLPDKPYMITASDDLTIKIWDYQT-KSCVATLEGHMSN---------------VSFAVFHPTLPIIISGSEDGTLKIWN 256 (304)
T ss_dssp CCSTTCCEEEEEETTSEEEEEETTT-TEEEEEEECCSSC---------------EEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred EEcCCCCEEEEEcCCCeEEEEeCCC-CccceeeCCCCCC---------------EEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 87 7789999865 9999999997 8888999888765 34899999999999999999999999
Q ss_pred cCCCceeeeeecCCCcceeEEEECCCCC--ceeecCCCCeEEE
Q 010256 427 CSEGSAESTTLEASKNPMRRQVQTPSRP--SRPLGSLSGVVRR 467 (514)
Q Consensus 427 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~v~i 467 (514)
+.+++ ...++..|...+.+++++|+++ ++++|+.||.+.+
T Consensus 257 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~ 298 (304)
T 2ynn_A 257 SSTYK-VEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL 298 (304)
T ss_dssp TTTCC-EEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEE
T ss_pred CCCCc-eeeeccCCCccEEEEEECCCCCceEEEEecCCceEEE
Confidence 99874 4578899999999999999875 5888888887766
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-43 Score=322.99 Aligned_cols=286 Identities=15% Similarity=0.215 Sum_probs=236.4
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|++++|+|++++|++|+.||.|+|||+.+++ ....+..|.
T Consensus 51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~-----------------------~~~~~~~~~---------- 97 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN-----------------------KVHAIPLRS---------- 97 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC-----------------------EEEEEECSS----------
T ss_pred ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCC-----------------------cceEeecCC----------
Confidence 45899999999999999999999999999999987665 335567777
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|.+++| ++++.++++++.|+.|++|++.+++...
T Consensus 98 --~~v~~~~~--s~~~~~l~s~~~d~~v~iw~~~~~~~~~---------------------------------------- 133 (340)
T 1got_B 98 --SWVMTCAY--APSGNYVACGGLDNICSIYNLKTREGNV---------------------------------------- 133 (340)
T ss_dssp --SCEEEEEE--CTTSSEEEEEETTCEEEEEETTTCSBSC----------------------------------------
T ss_pred --ccEEEEEE--CCCCCEEEEEeCCCeEEEEECccCCCcc----------------------------------------
Confidence 78999999 5677899999999999999987642000
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
+ .... +.+|.+.|.++.|++++. ++++ .|++|++||+++++...
T Consensus 134 -----------------~---------------~~~~-~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~- 178 (340)
T 1got_B 134 -----------------R---------------VSRE-LAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTT- 178 (340)
T ss_dssp -----------------E---------------EEEE-EECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEE-
T ss_pred -----------------e---------------eEEE-ecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEE-
Confidence 0 0001 267889999999998886 5666 99999999998665442
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
.+.+|...|.+++|+|++ .+|++|+.|+.|++||++++... . .+.+|...|.+++|
T Consensus 179 -------~~~~h~~~v~~~~~~~~~-~~l~sg~~d~~v~~wd~~~~~~~----~------------~~~~h~~~v~~v~~ 234 (340)
T 1got_B 179 -------TFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCR----Q------------TFTGHESDINAICF 234 (340)
T ss_dssp -------EECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCSEE----E------------EECCCSSCEEEEEE
T ss_pred -------EEcCCCCceEEEEECCCC-CEEEEEeCCCcEEEEECCCCeeE----E------------EEcCCcCCEEEEEE
Confidence 457799999999999998 89999999999999999887642 2 24556689999999
Q ss_pred ecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecC
Q 010256 350 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 350 s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 428 (514)
+|++++|++|+. ++|++||++. ++.+..+..+.. ...|.+++|+|+|++|++|+.||.|++||+.
T Consensus 235 ~p~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~~~~~-------------~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~ 300 (340)
T 1got_B 235 FPNGNAFATGSDDATCRLFDLRA-DQELMTYSHDNI-------------ICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300 (340)
T ss_dssp CTTSSEEEEEETTSCEEEEETTT-TEEEEEECCTTC-------------CSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred cCCCCEEEEEcCCCcEEEEECCC-CcEEEEEccCCc-------------ccceEEEEECCCCCEEEEECCCCeEEEEEcc
Confidence 999999999865 9999999986 555555432211 1125589999999999999999999999998
Q ss_pred CCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 429 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 429 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
++. ....+.+|..+|.+++|+|++++|++|+.|++|++
T Consensus 301 ~~~-~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~i 338 (340)
T 1got_B 301 KAD-RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338 (340)
T ss_dssp TCC-EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred cCc-EeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEe
Confidence 874 44788999999999999999999999999999998
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-43 Score=363.08 Aligned_cols=403 Identities=12% Similarity=0.101 Sum_probs=279.0
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|++++|+|++++||+|+.||.|+||+..+.+. ... ..|.
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~-----------------------~~~-~~~~---------- 58 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEV-----------------------VIK-LEDR---------- 58 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEE-----------------------EEE-CSSC----------
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEE-----------------------EEE-cCCC----------
Confidence 358999999999999999999999999999999765432 112 2344
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|.+++|+| +++|++++.|++|++||+.+++.......+ +.|. +++|+|+++.+
T Consensus 59 --~~V~~l~fsp---g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~---------~~V~-------~v~~sp~g~~l---- 113 (902)
T 2oaj_A 59 --SAIKEMRFVK---GIYLVVINAKDTVYVLSLYSQKVLTTVFVP---------GKIT-------SIDTDASLDWM---- 113 (902)
T ss_dssp --CCEEEEEEET---TTEEEEEETTCEEEEEETTTCSEEEEEECS---------SCEE-------EEECCTTCSEE----
T ss_pred --CCEEEEEEcC---CCEEEEEECcCeEEEEECCCCcEEEEEcCC---------CCEE-------EEEECCCCCEE----
Confidence 7799999975 569999999999999999998766555422 3344 88999999998
Q ss_pred CCCCCCcccCCCCCCcEEeceeecccccccccc-cc--c-cccccCccCeEEEEECCC-CCEEEEe-cCCeEEEEeccCC
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAG-CR--R-IYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEIS 264 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~-~~--~-~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~ 264 (514)
++++.||.|++|| +.......... .. . ....+|.+.|.+++|+|+ +..|++| .|+.| +||+++.
T Consensus 114 --------~sgs~dg~V~lwd-~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~ 183 (902)
T 2oaj_A 114 --------LIGLQNGSMIVYD-IDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVEN 183 (902)
T ss_dssp --------EEEETTSCEEEEE-TTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTT
T ss_pred --------EEEcCCCcEEEEE-CCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCC
Confidence 9999999999999 43322110000 00 0 123689999999999996 5688888 99999 9999865
Q ss_pred CceeeeeccC-----C------CcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccc-------------
Q 010256 265 NQSFNIVDVK-----P------ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT------------- 320 (514)
Q Consensus 265 ~~~~~~~~~~-----~------~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~------------- 320 (514)
+....+ ... + .....|...|.+++|+|++ .+|++|+.||.|++||+++++....
T Consensus 184 ~~~~~~-~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~ 261 (902)
T 2oaj_A 184 EIKQSF-IYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQP 261 (902)
T ss_dssp EEEEEE-CCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCT
T ss_pred ceEEEE-ecccCCcCCCcccccccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCC
Confidence 443222 111 0 0123456789999999998 8999999999999999977653210
Q ss_pred -----------ccc-------------------------------cee-cc-----------------------------
Q 010256 321 -----------HSK-------------------------------LFE-EQ----------------------------- 328 (514)
Q Consensus 321 -----------~~~-------------------------------~~~-~~----------------------------- 328 (514)
.+. .+. .+
T Consensus 262 ~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 341 (902)
T 2oaj_A 262 DYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPT 341 (902)
T ss_dssp TCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSS
T ss_pred cCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCC
Confidence 000 000 00
Q ss_pred --------------------CCC---------Cccc------------------eeeccccceeE---------------
Q 010256 329 --------------------EAP---------GTRS------------------FFTEIIASISD--------------- 346 (514)
Q Consensus 329 --------------------~~~---------~~~~------------------~~~~~~~~i~~--------------- 346 (514)
..+ .... .+..|...|++
T Consensus 342 ~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~ 421 (902)
T 2oaj_A 342 NVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGAL 421 (902)
T ss_dssp SSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHH
T ss_pred CCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHH
Confidence 000 0000 00011123333
Q ss_pred -------------------EEEecCCCEEEEEe-CCeEEEEEccCCCCce--eeeeeccccccccccccccCCccceeeE
Q 010256 347 -------------------IKFARNGRHILSRD-YMTLKLWDINMDSGPV--ATFQVHEHLRPKLCDLYENDSIFDKFEC 404 (514)
Q Consensus 347 -------------------~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 404 (514)
++|+|++++|++|+ |++|++||+.. +... ..+...- ...+ ....-..|.++
T Consensus 422 ~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~-g~~~~~~~~~~~l--~~~~----~~~h~~~V~sv 494 (902)
T 2oaj_A 422 SAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASH-GDIQDNASFEVNL--SRTL----NKAKELAVDKI 494 (902)
T ss_dssp HTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSC-CTTTTTBCEEEEH--HHHT----TCSSSCCEEEE
T ss_pred hcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCC-ccccCCceEEeec--hhhc----CCCCCCceeEE
Confidence 44568899999986 49999999986 4321 1111000 0000 00111235699
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCCc--------------------------------------------eeeeeecCC
Q 010256 405 CLSGDGGRVATGSYSNLFRVFGCSEGS--------------------------------------------AESTTLEAS 440 (514)
Q Consensus 405 ~~s~~~~~l~s~~~dg~i~iwd~~~~~--------------------------------------------~~~~~~~~~ 440 (514)
+|+|||++||+|+.||+|+|||+.+++ ....++.+|
T Consensus 495 afspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h 574 (902)
T 2oaj_A 495 SFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHAN 574 (902)
T ss_dssp EEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCC
T ss_pred EecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcC
Confidence 999999999999999999999997652 124678899
Q ss_pred CcceeEEEECCCCCceeecCCCCeEEEeeCCCCCcc---ccCCccc-ccccceEEEEEc-----CCC---CEEEEEe-cC
Q 010256 441 KNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSAL---DANGNAF-DFSMKLLHLAWH-----PSE---NSIACAA-SN 507 (514)
Q Consensus 441 ~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~---~~~~~~~-~~~~~v~~~~~s-----pd~---~~l~~~~-~~ 507 (514)
..+|++++|+|+| +||+|+.|++|++++-...... .+ .... .|...|++++|+ ||| ++|++++ ++
T Consensus 575 ~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~-~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~ 652 (902)
T 2oaj_A 575 KGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENI-REISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMG 652 (902)
T ss_dssp SCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEG-GGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTS
T ss_pred CCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeeh-hHhccccccceEEEEEEEEecCCCCCcceEEEEEecCC
Confidence 9999999999999 9999999999999543221100 01 1222 588899999999 886 8999888 56
Q ss_pred cEEEEe
Q 010256 508 SLYMYY 513 (514)
Q Consensus 508 ~~~i~~ 513 (514)
.+++|.
T Consensus 653 tv~~wd 658 (902)
T 2oaj_A 653 EVITYK 658 (902)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 788885
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-43 Score=323.17 Aligned_cols=310 Identities=15% Similarity=0.140 Sum_probs=225.9
Q ss_pred cccccccccchhhccccCcccccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCcc
Q 010256 10 AAAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPE 89 (514)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (514)
.|...+.|.+... ....|...|.+++|+|||++|++++ |+++++||.......... ..|.
T Consensus 12 ~p~~~r~w~~~~~-------~~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~------------~~~~ 71 (344)
T 4gqb_B 12 VPPAAREWNLPPN-------APACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPC------------AAPN 71 (344)
T ss_dssp -----------CC-------SCSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGG------------GTTC
T ss_pred CCccccccCCCCC-------CcccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeecccc------------ccCC
Confidence 3444566765431 1235778899999999999999887 778888874321100000 0000
Q ss_pred ceeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceec
Q 010256 90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG 169 (514)
Q Consensus 90 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 169 (514)
.........| +..|.+++|+| + ..|++++.||+|+|||+.+++.......
T Consensus 72 ~~~~~~~~~~------------~~~v~~~~~s~--d-~~l~~~s~dg~v~lWd~~~~~~~~~~~~--------------- 121 (344)
T 4gqb_B 72 EGFCSAGVQT------------EAGVADLTWVG--E-RGILVASDSGAVELWELDENETLIVSKF--------------- 121 (344)
T ss_dssp GGGCSEEEEE------------SSCEEEEEEET--T-TEEEEEETTSEEEEEEECTTSSCEEEEE---------------
T ss_pred cceeeeeecc------------CCCEEEEEEeC--C-CeEEEEECCCEEEEEeccCCCceeEeec---------------
Confidence 0011111122 37799999964 4 3788999999999999987652221110
Q ss_pred ccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEE
Q 010256 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 249 (514)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 249 (514)
...+|...|++++|+|++++|+
T Consensus 122 ----------------------------------------------------------~~~~H~~~V~~v~~spdg~~l~ 143 (344)
T 4gqb_B 122 ----------------------------------------------------------CKYEHDDIVSTVSVLSSGTQAV 143 (344)
T ss_dssp ----------------------------------------------------------EEECCSSCEEEEEECTTSSEEE
T ss_pred ----------------------------------------------------------cccCCCCCEEEEEECCCCCEEE
Confidence 1258999999999999999999
Q ss_pred Ee-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceecc
Q 010256 250 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 328 (514)
Q Consensus 250 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 328 (514)
+| .|++|++||+++++... .+.+|...|.+++|+|++..+|++++.|+.|++||+++++.. ..+..
T Consensus 144 sgs~d~~i~iwd~~~~~~~~--------~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~----~~~~~- 210 (344)
T 4gqb_B 144 SGSKDICIKVWDLAQQVVLS--------SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPA----SQIGC- 210 (344)
T ss_dssp EEETTSCEEEEETTTTEEEE--------EECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCE----EECC--
T ss_pred EEeCCCeEEEEECCCCcEEE--------EEcCcCCceEEEEecCCCCCceeeecccccccccccccccee----eeeec-
Confidence 99 99999999999665442 567899999999999998678999999999999999987753 22211
Q ss_pred CCCCccceeeccccceeEEEEecC-CCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEE
Q 010256 329 EAPGTRSFFTEIIASISDIKFARN-GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 406 (514)
Q Consensus 329 ~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 406 (514)
..|...+.+++|+|+ +++|++|+ |++|++||+++ ++++.++.+|... |.+++|
T Consensus 211 ---------~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~-~~~~~~~~~h~~~---------------v~~v~f 265 (344)
T 4gqb_B 211 ---------SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS-TSCVLSSAVHSQC---------------VTGLVF 265 (344)
T ss_dssp ------------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC---CCEEEECCSSC---------------EEEEEE
T ss_pred ---------ceeeccceeeeecCCCCcceEEeccCCcEEEEECCC-CcEEEEEcCCCCC---------------EEEEEE
Confidence 223357899999995 56788876 49999999997 8899999988765 449999
Q ss_pred cCCC-CEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCc-eeecCCCCeEEE
Q 010256 407 SGDG-GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPS-RPLGSLSGVVRR 467 (514)
Q Consensus 407 s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~s~d~~v~i 467 (514)
+|++ ++|++|+.|+.|+|||+.+++ ...+.+|...|++++|+|+++. |+++|.|++|++
T Consensus 266 sp~g~~~lasgs~D~~i~vwd~~~~~--~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~ 326 (344)
T 4gqb_B 266 SPHSVPFLASLSEDCSLAVLDSSLSE--LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVH 326 (344)
T ss_dssp CSSSSCCEEEEETTSCEEEECTTCCE--EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred ccCCCeEEEEEeCCCeEEEEECCCCc--EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEE
Confidence 9998 589999999999999998773 3567899999999999999875 679999999999
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=316.87 Aligned_cols=290 Identities=14% Similarity=0.202 Sum_probs=237.0
Q ss_pred cccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccc
Q 010256 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (514)
Q Consensus 30 ~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (514)
...+|.+.|++++|+|++++||+|+.||+|+|||..+++ ....+..|.
T Consensus 59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~-----------------------~~~~~~~~~--------- 106 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTN-----------------------KEHAVTMPC--------- 106 (354)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-----------------------EEEEEECSS---------
T ss_pred EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCC-----------------------cceEEecCC---------
Confidence 346899999999999999999999999999999987655 234556666
Q ss_pred ccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
..|.+++| ++++.++++++.|+.+++|++.......
T Consensus 107 ---~~v~~~~~--sp~g~~lasg~~d~~i~v~~~~~~~~~~--------------------------------------- 142 (354)
T 2pbi_B 107 ---TWVMACAY--APSGCAIACGGLDNKCSVYPLTFDKNEN--------------------------------------- 142 (354)
T ss_dssp ---SCCCEEEE--CTTSSEEEEESTTSEEEEEECCCCTTCC---------------------------------------
T ss_pred ---CCEEEEEE--CCCCCEEEEeeCCCCEEEEEEecccccc---------------------------------------
Confidence 77999999 5678899999999999999986431000
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCcee
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 268 (514)
. ...... +.+|...|.+++|+|++..|+++ .|++|++||+++++...
T Consensus 143 -----------------------~--------~~~~~~-~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~ 190 (354)
T 2pbi_B 143 -----------------------M--------AAKKKS-VAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQ 190 (354)
T ss_dssp -----------------------S--------GGGCEE-EEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred -----------------------c--------ccccee-eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEE
Confidence 0 000011 25788999999999999999999 99999999998765443
Q ss_pred eeeccCCCcccccCCceEEEEEecC--CCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeE
Q 010256 269 NIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (514)
Q Consensus 269 ~~~~~~~~~~~~~~~~i~~v~~~p~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 346 (514)
.+.+|...|.+++|+|+ + ++|++|+.||.|++||+++++.. .. +.+|...|.+
T Consensus 191 --------~~~~h~~~v~~~~~~~~~~g-~~l~sgs~Dg~v~~wd~~~~~~~----~~------------~~~h~~~v~~ 245 (354)
T 2pbi_B 191 --------SFHGHGADVLCLDLAPSETG-NTFVSGGCDKKAMVWDMRSGQCV----QA------------FETHESDVNS 245 (354)
T ss_dssp --------EEECCSSCEEEEEECCCSSC-CEEEEEETTSCEEEEETTTCCEE----EE------------ECCCSSCEEE
T ss_pred --------EEcCCCCCeEEEEEEeCCCC-CEEEEEeCCCeEEEEECCCCcEE----EE------------ecCCCCCeEE
Confidence 45778999999999884 4 79999999999999999987652 22 4456689999
Q ss_pred EEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEE
Q 010256 347 IKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 425 (514)
Q Consensus 347 ~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 425 (514)
++|+|++.+|++++. ++|++||++. .+.+..+..+.. ...+.+++|+|+|++|++|+.|+.|++|
T Consensus 246 v~~~p~~~~l~s~s~D~~v~lwd~~~-~~~~~~~~~~~~-------------~~~~~~~~~s~~g~~l~~g~~d~~i~vw 311 (354)
T 2pbi_B 246 VRYYPSGDAFASGSDDATCRLYDLRA-DREVAIYSKESI-------------IFGASSVDFSLSGRLLFAGYNDYTINVW 311 (354)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCTTC-------------CSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEeCCCCEEEEEeCCCeEEEEECCC-CcEEEEEcCCCc-------------ccceeEEEEeCCCCEEEEEECCCcEEEE
Confidence 999999999999865 9999999986 555544433221 1224589999999999999999999999
Q ss_pred ecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 426 GCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 426 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
|+.++.. ...+.+|..+|.+++|+|++++|++|+.|++|++
T Consensus 312 d~~~~~~-~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~v 352 (354)
T 2pbi_B 312 DVLKGSR-VSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRV 352 (354)
T ss_dssp ETTTCSE-EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred ECCCCce-EEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEe
Confidence 9988754 4788999999999999999999999999999998
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-42 Score=322.69 Aligned_cols=289 Identities=16% Similarity=0.190 Sum_probs=224.6
Q ss_pred cccccceEEEEEcCCCCeEEEecC------CCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccc
Q 010256 32 VQEVDIISAIEFDKSGDHLATGDR------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDY 105 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 105 (514)
..|...|++++|||||++||+|+. |+.|++|+..++... ........+|.
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~-------------------~~~~~~~~~~~----- 94 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPN-------------------ESLCTAGVQTE----- 94 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---C-------------------GGGCSEEEECS-----
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcc-------------------eeEecccCCCC-----
Confidence 469999999999999999999997 788999987665421 11223344565
Q ss_pred ccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCc
Q 010256 106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (514)
Q Consensus 106 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 185 (514)
..|.+++|+| ++ .+++++.||+|++||+.+++......
T Consensus 95 -------~~V~~~~~s~--d~-~~l~~s~dg~v~lWd~~~~~~~~~~~-------------------------------- 132 (357)
T 4g56_B 95 -------AGVTDVAWVS--EK-GILVASDSGAVELWEILEKESLLVNK-------------------------------- 132 (357)
T ss_dssp -------SCEEEEEEET--TT-EEEEEETTSCEEEC--------CCCC--------------------------------
T ss_pred -------CCEEEEEEcC--CC-CEEEEECCCEEEEeeccccceeEEEe--------------------------------
Confidence 7899999964 54 56778899999999998765221100
Q ss_pred cccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCC
Q 010256 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS 264 (514)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~ 264 (514)
....+|...|.+++|+|++++|++| .|++|++||++++
T Consensus 133 -----------------------------------------~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~ 171 (357)
T 4g56_B 133 -----------------------------------------FAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK 171 (357)
T ss_dssp -----------------------------------------EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTT
T ss_pred -----------------------------------------eccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence 0025788999999999999999999 9999999999866
Q ss_pred CceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccce
Q 010256 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (514)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 344 (514)
+... .+.+|...|++++|+|++..++++++.|+.|++||+++++... .+. +..|...+
T Consensus 172 ~~~~--------~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~----~~~----------~~~~~~~v 229 (357)
T 4g56_B 172 AVLK--------SYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPAT----RID----------FCASDTIP 229 (357)
T ss_dssp EEEE--------EECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBC----BCC----------CTTCCSCE
T ss_pred cEEE--------EEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceee----eee----------eccccccc
Confidence 5443 4577999999999999986689999999999999999876531 111 12344679
Q ss_pred eEEEEecCC-CEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCC-CEEEEEeCCCc
Q 010256 345 SDIKFARNG-RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG-GRVATGSYSNL 421 (514)
Q Consensus 345 ~~~~~s~~g-~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~ 421 (514)
.+++|+|++ .+|++|+. +.|++||+++ ++++..+..|... |.+++|+|++ ++|++|+.|+.
T Consensus 230 ~~v~~sp~~~~~la~g~~d~~i~~wd~~~-~~~~~~~~~~~~~---------------v~~l~~sp~~~~~lasgs~D~~ 293 (357)
T 4g56_B 230 TSVTWHPEKDDTFACGDETGNVSLVNIKN-PDSAQTSAVHSQN---------------ITGLAYSYHSSPFLASISEDCT 293 (357)
T ss_dssp EEEEECTTSTTEEEEEESSSCEEEEESSC-GGGCEEECCCSSC---------------EEEEEECSSSSCCEEEEETTSC
T ss_pred cchhhhhcccceEEEeecccceeEEECCC-CcEeEEEecccee---------------EEEEEEcCCCCCEEEEEeCCCE
Confidence 999999974 57777764 9999999997 7888888887754 4499999987 57999999999
Q ss_pred EEEEecCCCceeeeeecCCCcceeEEEECC-CCCceeecCCCCeEEE
Q 010256 422 FRVFGCSEGSAESTTLEASKNPMRRQVQTP-SRPSRPLGSLSGVVRR 467 (514)
Q Consensus 422 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~s~d~~v~i 467 (514)
|+|||+++++. ....+|...|++++|+| ++++|+++|.|++|++
T Consensus 294 i~iwd~~~~~~--~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~i 338 (357)
T 4g56_B 294 VAVLDADFSEV--FRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLH 338 (357)
T ss_dssp EEEECTTSCEE--EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred EEEEECCCCcE--eEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEE
Confidence 99999998743 34458999999999998 7999999999999999
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=369.12 Aligned_cols=378 Identities=13% Similarity=0.181 Sum_probs=281.9
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|++++|+|+|++||+|+.||.|+|||+.+++ ....+.+|.
T Consensus 611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~-----------------------~~~~~~~h~---------- 657 (1249)
T 3sfz_A 611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE-----------------------KLLDIKAHE---------- 657 (1249)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----------------------EEEEECCCS----------
T ss_pred EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCC-----------------------EEEEeccCC----------
Confidence 45799999999999999999999999999999998776 346678888
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|.+++| +++++++++++.|+.|++||+.+++.......+ .+.+. .++|+|++...
T Consensus 658 --~~v~~~~~--s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~--------~~~v~-------~~~~~~~~~~~---- 714 (1249)
T 3sfz_A 658 --DEVLCCAF--SSDDSYIATCSADKKVKIWDSATGKLVHTYDEH--------SEQVN-------CCHFTNKSNHL---- 714 (1249)
T ss_dssp --SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCEEEEEECC--------SSCEE-------EEEECSSSSCC----
T ss_pred --CCEEEEEE--ecCCCEEEEEeCCCeEEEEECCCCceEEEEcCC--------CCcEE-------EEEEecCCCce----
Confidence 88999999 567889999999999999999999877666544 23444 78899854422
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
++++++.|+.|++|| +... .+... +.+|...|.+++|+|++++|+++ .||+|++||+++......
T Consensus 715 ------~l~sg~~d~~v~vwd-~~~~------~~~~~-~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~ 780 (1249)
T 3sfz_A 715 ------LLATGSNDFFLKLWD-LNQK------ECRNT-MFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKS 780 (1249)
T ss_dssp ------EEEEEETTSCEEEEE-TTSS------SEEEE-ECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEE
T ss_pred ------EEEEEeCCCeEEEEE-CCCc------chhhe-ecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccce
Confidence 128999999999999 3322 22333 36899999999999999999999 999999999986543221
Q ss_pred ee------------------------------------------ccCC-----CcccccCCceEEEEEecCCCcEEEEEe
Q 010256 270 IV------------------------------------------DVKP-----ANMEDLTEVITSAEFHPTHCNMLAYSS 302 (514)
Q Consensus 270 ~~------------------------------------------~~~~-----~~~~~~~~~i~~v~~~p~~~~~l~~~~ 302 (514)
+. +... ....+|...+.+++|+|++ .++++++
T Consensus 781 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~ 859 (1249)
T 3sfz_A 781 INVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD-HLAVIAL 859 (1249)
T ss_dssp EECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST-TEEEEEC
T ss_pred ecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC-CEEEEEe
Confidence 10 0000 0012577889999999998 8999999
Q ss_pred cCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCC---------
Q 010256 303 SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMD--------- 372 (514)
Q Consensus 303 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~--------- 372 (514)
.||.|++||+.++... . .+.+|...|.+++|+|+|+++++++. +.|++||+...
T Consensus 860 ~dg~v~vwd~~~~~~~----~------------~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~ 923 (1249)
T 3sfz_A 860 SQYCVELWNIDSRLKV----A------------DCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLK 923 (1249)
T ss_dssp SSSCEEEEETTTTEEE----E------------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEE
T ss_pred CCCeEEEEEcCCCcee----e------------ecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeeccc
Confidence 9999999999887642 2 23455567788888887777777654 77777775420
Q ss_pred ---------------------------------------------------------------------CCceeeeeecc
Q 010256 373 ---------------------------------------------------------------------SGPVATFQVHE 383 (514)
Q Consensus 373 ---------------------------------------------------------------------~~~~~~~~~~~ 383 (514)
++....+.+|.
T Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~ 1003 (1249)
T 3sfz_A 924 QEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHK 1003 (1249)
T ss_dssp EEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCS
T ss_pred ceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCC
Confidence 11111111121
Q ss_pred ccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCc--------------------------------
Q 010256 384 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS-------------------------------- 431 (514)
Q Consensus 384 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-------------------------------- 431 (514)
..|.+++|+|+|++|++++.||.|++||+.++.
T Consensus 1004 ---------------~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~ 1068 (1249)
T 3sfz_A 1004 ---------------KAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVK 1068 (1249)
T ss_dssp ---------------SCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEE
T ss_pred ---------------CceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEE
Confidence 134578888888888888888888888776542
Q ss_pred -------eeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEE
Q 010256 432 -------AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACA 504 (514)
Q Consensus 432 -------~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~ 504 (514)
.....+.+|...+.+++|+|+++++++++.|++|++++-. ..........|...|++++|+||+++|+++
T Consensus 1069 vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~---~~~~~~~l~~h~~~v~~~~~s~dg~~lat~ 1145 (1249)
T 3sfz_A 1069 VWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD---LLSPLHELKGHNGCVRCSAFSLDGILLATG 1145 (1249)
T ss_dssp EEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSS---SSSCSBCCCCCSSCEEEEEECSSSSEEEEE
T ss_pred EEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECC---CcceeeeeccCCCcEEEEEECCCCCEEEEE
Confidence 1224556788889999999999999999999999993322 112222344688999999999999999999
Q ss_pred ec-CcEEEEe
Q 010256 505 AS-NSLYMYY 513 (514)
Q Consensus 505 ~~-~~~~i~~ 513 (514)
+. +.+++|.
T Consensus 1146 ~~dg~i~vwd 1155 (1249)
T 3sfz_A 1146 DDNGEIRIWN 1155 (1249)
T ss_dssp ETTSCCCEEE
T ss_pred eCCCEEEEEE
Confidence 85 5688886
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-41 Score=310.57 Aligned_cols=290 Identities=16% Similarity=0.213 Sum_probs=236.5
Q ss_pred eeeeeccCCCccccccccccccceeEEEEeeC--CCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceec
Q 010256 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQS--ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG 169 (514)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~--~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 169 (514)
....+++|. +.|.+++|+|. .++.+|++|+.|++|++|++..++......
T Consensus 24 ~~~~~~~H~------------~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~---------------- 75 (321)
T 3ow8_A 24 LFKQEQAHD------------DAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWS---------------- 75 (321)
T ss_dssp EEEETTSSS------------SCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEE----------------
T ss_pred eeeecccCC------------CcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeee----------------
Confidence 345567888 99999999763 356799999999999999987654211100
Q ss_pred ccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEE
Q 010256 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 249 (514)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 249 (514)
+.+|...|.+++|++++.+++
T Consensus 76 -----------------------------------------------------------l~gh~~~v~~~~~~~~~~~l~ 96 (321)
T 3ow8_A 76 -----------------------------------------------------------LEGHQLGVVSVDISHTLPIAA 96 (321)
T ss_dssp -----------------------------------------------------------ECCCSSCEEEEEECSSSSEEE
T ss_pred -----------------------------------------------------------eccCCCCEEEEEECCCCCEEE
Confidence 367889999999999999999
Q ss_pred Ee-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceecc
Q 010256 250 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 328 (514)
Q Consensus 250 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 328 (514)
++ .|++|++||+++++... .+..+...+.+++|+|++ ++|++|+.|+.|++||+++++.. ..
T Consensus 97 s~s~D~~i~lWd~~~~~~~~--------~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~----~~---- 159 (321)
T 3ow8_A 97 SSSLDAHIRLWDLENGKQIK--------SIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKE----YS---- 159 (321)
T ss_dssp EEETTSEEEEEETTTTEEEE--------EEECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSEE----EE----
T ss_pred EEeCCCcEEEEECCCCCEEE--------EEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCcee----EE----
Confidence 99 99999999998665443 345567788999999999 89999999999999999887642 22
Q ss_pred CCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEc
Q 010256 329 EAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 407 (514)
Q Consensus 329 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 407 (514)
+..|...|.+++|+|+|++|++|+. +.|++||+++ ++.+..+.+|...+ .+++|+
T Consensus 160 --------~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~-~~~~~~~~~h~~~v---------------~~l~~s 215 (321)
T 3ow8_A 160 --------LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT-GKLLHTLEGHAMPI---------------RSLTFS 215 (321)
T ss_dssp --------EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECCCSSCC---------------CEEEEC
T ss_pred --------ecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCC-CcEEEEEcccCCce---------------eEEEEc
Confidence 3344568999999999999999865 9999999997 88888888877553 399999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCccccccc
Q 010256 408 GDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSM 487 (514)
Q Consensus 408 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~ 487 (514)
|++++|++|+.|+.|++||+.++. ...++.+|...|.+++|+|++++|++++.|++|++.+ +..........+|..
T Consensus 216 pd~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd---~~~~~~~~~~~~h~~ 291 (321)
T 3ow8_A 216 PDSQLLVTASDDGYIKIYDVQHAN-LAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWD---VGTRTCVHTFFDHQD 291 (321)
T ss_dssp TTSCEEEEECTTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE---TTTTEEEEEECCCSS
T ss_pred CCCCEEEEEcCCCeEEEEECCCcc-eeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEe---CCCCEEEEEEcCCCC
Confidence 999999999999999999999874 4478999999999999999999999999999999933 222222333446899
Q ss_pred ceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 488 KLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 488 ~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
.|.+++|+|++++|++++ ++.+.+|.
T Consensus 292 ~v~~v~~s~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 292 QVWGVKYNGNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp CEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 999999999999999887 55788886
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=335.60 Aligned_cols=388 Identities=12% Similarity=0.129 Sum_probs=287.9
Q ss_pred cccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccc
Q 010256 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (514)
..|.+.|++++|+|+|++||+++ ++.|+||++.++.. .......+.+|.
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~-------------------~~~~~~~~~~h~----------- 63 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDS-------------------KVPPVVQFTGHG----------- 63 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCC-------------------SSCSEEEECTTT-----------
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCC-------------------ccccceEEecCC-----------
Confidence 47889999999999999999998 88999999986610 001346678888
Q ss_pred ccc-eeEEEEeeCCCCcEEEEeeCCCeEEEEEcCcc------EEEEEeeccCCCccccCCcceecccccCCceeeccCCC
Q 010256 112 EEK-INKIRWCQSANSALYLLSTNDKTIKLWKVQEK------KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (514)
Q Consensus 112 ~~~-v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 184 (514)
.. |++++|+|..++++|++++.||.|++||+.++ +......+..+ .+.+. .++|+|+++
T Consensus 64 -~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~------~~~v~-------~~~~s~~~~ 129 (615)
T 1pgu_A 64 -SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVL------AGPIS-------DISWDFEGR 129 (615)
T ss_dssp -TSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECC------SSCEE-------EEEECTTSS
T ss_pred -CceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcc------cccEE-------EEEEeCCCC
Confidence 88 99999954227889999999999999999765 32222222211 23444 889999999
Q ss_pred ccccccCCCCCCcccCCCCC----CcEEeceeeccccccccccccccccccCccCeEEEEECCCCC-EEEEe-cCCeEEE
Q 010256 185 CGERNFGCASNDSSFPPGGV----SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINL 258 (514)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~----~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~-~d~~i~i 258 (514)
.+ ++++.+ +.|.+|+ .. ..... +.+|...|.+++|+|+++ .++++ .|+.|++
T Consensus 130 ~l------------~~~~~~~~~~~~v~~~d-~~--------~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~v 187 (615)
T 1pgu_A 130 RL------------CVVGEGRDNFGVFISWD-SG--------NSLGE-VSGHSQRINACHLKQSRPMRSMTVGDDGSVVF 187 (615)
T ss_dssp EE------------EEEECCSSCSEEEEETT-TC--------CEEEE-CCSCSSCEEEEEECSSSSCEEEEEETTTEEEE
T ss_pred EE------------EEeccCCCCccEEEEEE-CC--------Cccee-eecCCccEEEEEECCCCCcEEEEEeCCCcEEE
Confidence 88 777766 7899888 21 12222 378999999999999998 78888 9999999
Q ss_pred EeccCCCceeeeeccCCCcccccCC---ceEEEEEecC-CCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCcc
Q 010256 259 WNLEISNQSFNIVDVKPANMEDLTE---VITSAEFHPT-HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 334 (514)
Q Consensus 259 wd~~~~~~~~~~~~~~~~~~~~~~~---~i~~v~~~p~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 334 (514)
||+++.+... .+..|.. .|.+++|+|+ + ++|++++.|+.|++||+++++.. ..+...
T Consensus 188 wd~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~------ 248 (615)
T 1pgu_A 188 YQGPPFKFSA--------SDRTHHKQGSFVRDVEFSPDSG-EFVITVGSDRKISCFDGKSGEFL----KYIEDD------ 248 (615)
T ss_dssp EETTTBEEEE--------EECSSSCTTCCEEEEEECSTTC-CEEEEEETTCCEEEEETTTCCEE----EECCBT------
T ss_pred EeCCCcceee--------eecccCCCCceEEEEEECCCCC-CEEEEEeCCCeEEEEECCCCCEe----EEeccc------
Confidence 9998654432 3566777 8999999999 8 89999999999999999887653 222000
Q ss_pred ceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeec-------------------------------
Q 010256 335 SFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVH------------------------------- 382 (514)
Q Consensus 335 ~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~------------------------------- 382 (514)
...|...|.+++|+ ++++|++++. +.|++||+.+ ++.+..+..+
T Consensus 249 --~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~ 324 (615)
T 1pgu_A 249 --QEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTT-SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 324 (615)
T ss_dssp --TBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTT-TEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEE
T ss_pred --ccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCC-CcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEE
Confidence 01466789999999 9999998764 9999999875 4433333222
Q ss_pred --------------ccccc-----------------------------------------cc-----------c------
Q 010256 383 --------------EHLRP-----------------------------------------KL-----------C------ 390 (514)
Q Consensus 383 --------------~~~~~-----------------------------------------~~-----------~------ 390 (514)
...+. .+ -
T Consensus 325 d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~ 404 (615)
T 1pgu_A 325 ELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHE 404 (615)
T ss_dssp ETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEE
T ss_pred ECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCc
Confidence 00000 00 0
Q ss_pred -------------------------------------------------------------c---------------ccc
Q 010256 391 -------------------------------------------------------------D---------------LYE 394 (514)
Q Consensus 391 -------------------------------------------------------------~---------------~~~ 394 (514)
+ ...
T Consensus 405 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~ 484 (615)
T 1pgu_A 405 FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLK 484 (615)
T ss_dssp CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECS
T ss_pred ccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCcccccccc
Confidence 0 000
Q ss_pred cCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecC-CCcceeEEEECC----------CCCceeecCCCC
Q 010256 395 NDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA-SKNPMRRQVQTP----------SRPSRPLGSLSG 463 (514)
Q Consensus 395 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~----------~~~~l~s~s~d~ 463 (514)
......|.+++|+|++++|++++.||.|++||+.+++. ...+.+ |...|.+++|+| ++++|++++.|+
T Consensus 485 ~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg 563 (615)
T 1pgu_A 485 TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREV-KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT 563 (615)
T ss_dssp SCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-EECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTS
T ss_pred CCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcc-eeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCC
Confidence 01112567899999999999999999999999998744 466777 999999999999 999999999999
Q ss_pred eEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 464 VVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 464 ~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
.|++++-.... ........|...|++++|+||++ |++++ ++.+++|.
T Consensus 564 ~i~iw~~~~~~--~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~ 611 (615)
T 1pgu_A 564 NIFIYSVKRPM--KIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN 611 (615)
T ss_dssp CEEEEESSCTT--CCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred cEEEEECCCCc--eechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEe
Confidence 99994332211 12222345899999999999999 88777 56688886
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-41 Score=305.14 Aligned_cols=287 Identities=17% Similarity=0.193 Sum_probs=233.3
Q ss_pred eeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceeccc
Q 010256 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (514)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (514)
...++.+|. +.|.+++| ++++.+|++++.||.|++||+.+++....
T Consensus 5 ~~~~~~~h~------------~~V~~~~f--sp~~~~l~s~~~dg~v~lWd~~~~~~~~~-------------------- 50 (304)
T 2ynn_A 5 IKKTFSNRS------------DRVKGIDF--HPTEPWVLTTLYSGRVELWNYETQVEVRS-------------------- 50 (304)
T ss_dssp CEEEEEEEC------------SCEEEEEE--CSSSSEEEEEETTSEEEEEETTTTEEEEE--------------------
T ss_pred eEEeecCCC------------CceEEEEE--CCCCCEEEEEcCCCcEEEEECCCCceeEE--------------------
Confidence 456788888 88999999 56778999999999999999988763321
Q ss_pred ccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe
Q 010256 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 251 (514)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 251 (514)
+..|..+|.+++|+|++++|++|
T Consensus 51 ---------------------------------------------------------~~~~~~~v~~~~~~~~~~~l~s~ 73 (304)
T 2ynn_A 51 ---------------------------------------------------------IQVTETPVRAGKFIARKNWIIVG 73 (304)
T ss_dssp ---------------------------------------------------------EECCSSCEEEEEEEGGGTEEEEE
T ss_pred ---------------------------------------------------------eeccCCcEEEEEEeCCCCEEEEE
Confidence 14566789999999999999999
Q ss_pred -cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCC
Q 010256 252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (514)
Q Consensus 252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 330 (514)
.|++|++||+++++... .+.+|...|.+++|+|++ .+|++|+.|+.|++||++++... .
T Consensus 74 s~d~~i~vwd~~~~~~~~--------~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~---~-------- 133 (304)
T 2ynn_A 74 SDDFRIRVFNYNTGEKVV--------DFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWAL---E-------- 133 (304)
T ss_dssp ETTSEEEEEETTTCCEEE--------EEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEE---E--------
T ss_pred CCCCEEEEEECCCCcEEE--------EEeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcch---h--------
Confidence 99999999999776543 467799999999999999 89999999999999999876432 1
Q ss_pred CCccceeeccccceeEEEEec-CCCEEEEEe-CCeEEEEEccCCCCceeeeeecc-ccccccccccccCCccceeeEEEc
Q 010256 331 PGTRSFFTEIIASISDIKFAR-NGRHILSRD-YMTLKLWDINMDSGPVATFQVHE-HLRPKLCDLYENDSIFDKFECCLS 407 (514)
Q Consensus 331 ~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s 407 (514)
..+.+|...|.+++|+| ++.+|++|+ |++|++||+.. ..+...+..+. .. +..++|+
T Consensus 134 ----~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~-~~~~~~~~~~~~~~---------------v~~~~~~ 193 (304)
T 2ynn_A 134 ----QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ-STPNFTLTTGQERG---------------VNYVDYY 193 (304)
T ss_dssp ----EEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTC-SSCSEEEECCCTTC---------------EEEEEEC
T ss_pred ----hhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCC-CCccceeccCCcCc---------------EEEEEEE
Confidence 22456778999999999 678899876 59999999986 55544443322 21 3367787
Q ss_pred C--CCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCccccc
Q 010256 408 G--DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDF 485 (514)
Q Consensus 408 ~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~ 485 (514)
| ++++|++|+.|+.|++||+.+++ ...++.+|...|..++|+|++++|++++.|++|++.+.. ..........+
T Consensus 194 ~~~~~~~l~s~s~D~~i~iWd~~~~~-~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~---~~~~~~~~~~~ 269 (304)
T 2ynn_A 194 PLPDKPYMITASDDLTIKIWDYQTKS-CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS---TYKVEKTLNVG 269 (304)
T ss_dssp CSTTCCEEEEEETTSEEEEEETTTTE-EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT---TCCEEEEECCS
T ss_pred EcCCCCEEEEEcCCCeEEEEeCCCCc-cceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECC---CCceeeeccCC
Confidence 6 78899999999999999999874 458899999999999999999999999999999994332 22222233346
Q ss_pred ccceEEEEEcCCCC--EEEEEecCcEEEEe
Q 010256 486 SMKLLHLAWHPSEN--SIACAASNSLYMYY 513 (514)
Q Consensus 486 ~~~v~~~~~spd~~--~l~~~~~~~~~i~~ 513 (514)
...+.+++|+|++. +||+++++++.+|.
T Consensus 270 ~~~~~~~~~~~~~~~~~~asg~~~g~~~~~ 299 (304)
T 2ynn_A 270 LERSWCIATHPTGRKNYIASGFDNGFTVLS 299 (304)
T ss_dssp SSSEEEEEECTTCGGGCEEEEETTEEEEEE
T ss_pred CccEEEEEECCCCCceEEEEecCCceEEEE
Confidence 78999999999985 68999999999986
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-42 Score=370.04 Aligned_cols=397 Identities=15% Similarity=0.207 Sum_probs=298.0
Q ss_pred cccccchhhccccCcccccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceee
Q 010256 14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK 93 (514)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (514)
-..|+.... +. .....+|.+.|++++|+|+|++||+|+.||.|+|||+.+++ ..
T Consensus 639 i~vw~~~~~--~~-~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~-----------------------~~ 692 (1249)
T 3sfz_A 639 LQVFKAETG--EK-LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK-----------------------LV 692 (1249)
T ss_dssp EEEEETTTC--CE-EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-----------------------EE
T ss_pred EEEEECCCC--CE-EEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCc-----------------------eE
Confidence 345766542 11 11234799999999999999999999999999999998766 44
Q ss_pred eeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceeccccc
Q 010256 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS 173 (514)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 173 (514)
..+.+|. ..|.+++|+|..++.++++++.|+.|++||+.+++.......+ .+.+.
T Consensus 693 ~~~~~~~------------~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h--------~~~v~----- 747 (1249)
T 3sfz_A 693 HTYDEHS------------EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGH--------TNSVN----- 747 (1249)
T ss_dssp EEEECCS------------SCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCC--------SSCEE-----
T ss_pred EEEcCCC------------CcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCC--------CCCEE-----
Confidence 6778888 8899999987667779999999999999999998876655543 23444
Q ss_pred CCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccc---------------------------------
Q 010256 174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNL--------------------------------- 220 (514)
Q Consensus 174 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~--------------------------------- 220 (514)
.++|+|+++.+ ++++.|+.|++||+ .......
T Consensus 748 --~~~~sp~~~~l------------~s~s~dg~v~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 812 (1249)
T 3sfz_A 748 --HCRFSPDDELL------------ASCSADGTLRLWDV-RSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDK 812 (1249)
T ss_dssp --EEEECSSTTEE------------EEEESSSEEEEEEG-GGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSE
T ss_pred --EEEEecCCCEE------------EEEECCCeEEEEeC-CCCcccceecccccccccCCccccccceEEEEEECCCCCE
Confidence 78899999888 88888888888883 2211000
Q ss_pred ----------------------------------------------------------cccccccccccCccCeEEEEEC
Q 010256 221 ----------------------------------------------------------VAGCRRIYAHAHDYHINSISNN 242 (514)
Q Consensus 221 ----------------------------------------------------------~~~~~~~~~~~h~~~v~~~~~~ 242 (514)
....... +.+|...|.+++|+
T Consensus 813 l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~-~~~h~~~v~~v~~s 891 (1249)
T 3sfz_A 813 IIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVAD-CRGHLSWVHGVMFS 891 (1249)
T ss_dssp EEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEE-ECCCSSCEEEEEEC
T ss_pred EEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeee-cCCCccceEEEEEC
Confidence 0000111 25688889999999
Q ss_pred CCCCEEEEe-cCCeEEEEeccCCCc-------------------------------------------------------
Q 010256 243 SDGETFISA-DDLRINLWNLEISNQ------------------------------------------------------- 266 (514)
Q Consensus 243 ~~~~~l~s~-~d~~i~iwd~~~~~~------------------------------------------------------- 266 (514)
|+++.|+++ .|+.|++|++.....
T Consensus 892 pdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 971 (1249)
T 3sfz_A 892 PDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSP 971 (1249)
T ss_dssp TTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECT
T ss_pred CCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcC
Confidence 999999988 899999998652100
Q ss_pred ------------eeeeeccCC----CcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCC
Q 010256 267 ------------SFNIVDVKP----ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (514)
Q Consensus 267 ------------~~~~~~~~~----~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 330 (514)
.+.+++... ..+.+|...|.+++|+|++ +++++++.||.|++||+.++...
T Consensus 972 ~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~dg~i~vwd~~~~~~~------------ 1038 (1249)
T 3sfz_A 972 HLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG-KTLISSSEDSVIQVWNWQTGDYV------------ 1038 (1249)
T ss_dssp TSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSS-SCEEEECSSSBEEEEETTTTEEE------------
T ss_pred CCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCceE------------
Confidence 001111110 1234577778888888887 78888888888888888776542
Q ss_pred CCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCC
Q 010256 331 PGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 410 (514)
Q Consensus 331 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 410 (514)
.+.+|...|.+++|+|++.+++.+.++.|++||+.+ ++.+..+..|...+ .+++|+|++
T Consensus 1039 -----~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~-~~~~~~~~~~~~~v---------------~~~~~s~d~ 1097 (1249)
T 3sfz_A 1039 -----FLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVIT-GRIERDFTCHQGTV---------------LSCAISSDA 1097 (1249)
T ss_dssp -----CCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTT-TCCCEEEECCSSCC---------------CCEEECSSS
T ss_pred -----EEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCC-CceeEEEcccCCcE---------------EEEEECCCC
Confidence 133566889999999988766666779999999997 88888888887653 389999999
Q ss_pred CEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeC--CCCCccc----cCCcccc
Q 010256 411 GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKG--ADNSALD----ANGNAFD 484 (514)
Q Consensus 411 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~--~~~~~~~----~~~~~~~ 484 (514)
++|++++.||.|++||+.++.. ...+.+|..+|.+++|+|++++|++++.||.|++++- .+..... .......
T Consensus 1098 ~~l~s~s~d~~v~iwd~~~~~~-~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 1176 (1249)
T 3sfz_A 1098 TKFSSTSADKTAKIWSFDLLSP-LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTAT 1176 (1249)
T ss_dssp SSCEEECCSSCCCEECSSSSSC-SBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------
T ss_pred CEEEEEcCCCcEEEEECCCcce-eeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccc
Confidence 9999999999999999998754 4788999999999999999999999999999999332 2111100 0011135
Q ss_pred cccceEEEEEcCCCCEEEEEecCcEEEEe
Q 010256 485 FSMKLLHLAWHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 485 ~~~~v~~~~~spd~~~l~~~~~~~~~i~~ 513 (514)
|...|++++|+||+++|++++ +.+.+|.
T Consensus 1177 ~~~~v~~l~fs~dg~~l~s~~-g~v~vwd 1204 (1249)
T 3sfz_A 1177 HGGWVTDVCFSPDSKTLVSAG-GYLKWWN 1204 (1249)
T ss_dssp CCSCCCEEEECTTSSCEEEES-SSEEEBC
T ss_pred cCceEEEEEECCCCCEEEECC-CeEEEEE
Confidence 788999999999999999886 7899986
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-41 Score=319.47 Aligned_cols=286 Identities=15% Similarity=0.220 Sum_probs=238.9
Q ss_pred eeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceeccc
Q 010256 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (514)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (514)
....+.+|. ..|++++| ++++.+|++++.|++|++||+.+++...
T Consensus 100 ~~~~l~gh~------------~~V~~~~~--~p~~~~l~s~s~Dg~i~vwd~~~~~~~~--------------------- 144 (410)
T 1vyh_C 100 EKYALSGHR------------SPVTRVIF--HPVFSVMVSASEDATIKVWDYETGDFER--------------------- 144 (410)
T ss_dssp CSCEEECCS------------SCEEEEEE--CSSSSEEEEEESSSCEEEEETTTCCCCE---------------------
T ss_pred ceEeecccC------------CcEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEE---------------------
Confidence 344577887 89999999 4567799999999999999998764211
Q ss_pred ccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe
Q 010256 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 251 (514)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 251 (514)
. +.+|...|.+++|+|++++|++|
T Consensus 145 -------------------------------------------------------~-l~~h~~~V~~v~~~~~~~~l~sg 168 (410)
T 1vyh_C 145 -------------------------------------------------------T-LKGHTDSVQDISFDHSGKLLASC 168 (410)
T ss_dssp -------------------------------------------------------E-ECCCSSCEEEEEECTTSSEEEEE
T ss_pred -------------------------------------------------------E-EeccCCcEEEEEEcCCCCEEEEE
Confidence 0 26788999999999999999999
Q ss_pred -cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCC
Q 010256 252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (514)
Q Consensus 252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 330 (514)
.|++|++||+.+.+... .+.+|...|.+++|+|++ .+|++|+.|+.|++||++++... ..
T Consensus 169 s~D~~i~iwd~~~~~~~~--------~~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~~----~~------ 229 (410)
T 1vyh_C 169 SADMTIKLWDFQGFECIR--------TMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCV----KT------ 229 (410)
T ss_dssp ETTSCCCEEETTSSCEEE--------CCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEE----EE------
T ss_pred eCCCeEEEEeCCCCceeE--------EEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEE----EE------
Confidence 99999999998654332 567899999999999998 89999999999999999987652 22
Q ss_pred CCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCC
Q 010256 331 PGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (514)
Q Consensus 331 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 409 (514)
+.+|...|.++.|+|++.+|++|+. +.|++||+.+ ++....+..|... |.+++|+|+
T Consensus 230 ------~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~-~~~~~~~~~h~~~---------------v~~~~~~~~ 287 (410)
T 1vyh_C 230 ------FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT-KECKAELREHRHV---------------VECISWAPE 287 (410)
T ss_dssp ------EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEEECCCSSC---------------EEEEEECCS
T ss_pred ------EeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCC-CceeeEecCCCce---------------EEEEEEcCc
Confidence 4556688999999999999999864 9999999997 7888888877765 348899886
Q ss_pred --------------------CCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEee
Q 010256 410 --------------------GGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVK 469 (514)
Q Consensus 410 --------------------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~ 469 (514)
|.+|++|+.|+.|++||+.++. ...++.+|...|.+++|+|++++|++++.|++|++.+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~-~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd 366 (410)
T 1vyh_C 288 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD 366 (410)
T ss_dssp CGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE-EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEEC
T ss_pred ccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc-eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 6799999999999999999874 4478899999999999999999999999999999943
Q ss_pred CCCCCccccCCcccccccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 470 GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
. ...........|...|++++|+|++++|++++ ++.+.+|.
T Consensus 367 ~---~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 367 Y---KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp C---TTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred C---CCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 2 22122233446899999999999999999888 66788885
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-41 Score=309.96 Aligned_cols=306 Identities=15% Similarity=0.222 Sum_probs=229.4
Q ss_pred ccccc-ceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 32 VQEVD-IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 32 ~~h~~-~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
.+|.+ .|.+++|+|+|++||+|+.|+.|+||++.++... .......+|.
T Consensus 12 ~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~--------------------~~~~~~~~h~---------- 61 (345)
T 3fm0_A 12 PAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWI--------------------CKSVLSEGHQ---------- 61 (345)
T ss_dssp CCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEE--------------------EEEEECSSCS----------
T ss_pred cCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcce--------------------eeeeeccccC----------
Confidence 36777 9999999999999999999999999998765421 0112235787
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|.+++| ++++++|++++.|++|++|++..+......
T Consensus 62 --~~v~~~~~--sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~-------------------------------------- 99 (345)
T 3fm0_A 62 --RTVRKVAW--SPCGNYLASASFDATTCIWKKNQDDFECVT-------------------------------------- 99 (345)
T ss_dssp --SCEEEEEE--CTTSSEEEEEETTSCEEEEEECCC-EEEEE--------------------------------------
T ss_pred --CcEEEEEE--CCCCCEEEEEECCCcEEEEEccCCCeEEEE--------------------------------------
Confidence 88999999 567889999999999999998765422110
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
. +.+|...|.+++|+|++++|++| .|++|++||++.......
T Consensus 100 ------------------------------------~-~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~ 142 (345)
T 3fm0_A 100 ------------------------------------T-LEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYEC 142 (345)
T ss_dssp ------------------------------------E-ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEE
T ss_pred ------------------------------------E-ccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEE
Confidence 1 26788999999999999999999 999999999986543221
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
+ ..+.+|...|.+++|+|++ .+|++|+.|+.|++||++++.... ...+.+|...|.+++|
T Consensus 143 ~-----~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~~w~~~~~~~~~--------------~~~~~~h~~~v~~l~~ 202 (345)
T 3fm0_A 143 V-----SVLNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWVC--------------CATLEGHESTVWSLAF 202 (345)
T ss_dssp E-----EEECCCCSCEEEEEECSSS-SCEEEEETTSCEEEEEEETTEEEE--------------EEEECCCSSCEEEEEE
T ss_pred E-----EEecCcCCCeEEEEECCCC-CEEEEEeCCCcEEEEEecCCCEEE--------------EEEecCCCCceEEEEE
Confidence 1 1456789999999999999 899999999999999998764210 1225567789999999
Q ss_pred ecCCCEEEEEeC-CeEEEEEccCCCCceeeeeecc-ccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEec
Q 010256 350 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHE-HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (514)
Q Consensus 350 s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 427 (514)
+|+|++|++++. ++|+|||...++.......... .....+..+ .......|++++|+|++.+|++++.|+.|++|+.
T Consensus 203 sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~ 281 (345)
T 3fm0_A 203 DPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTL-SGFHSRTIYDIAWCQLTGALATACGDDAIRVFQE 281 (345)
T ss_dssp CTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEE-CSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEE
T ss_pred CCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEe-cCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEe
Confidence 999999999865 9999999754222111000000 000000000 0001112559999999999999999999999998
Q ss_pred CCCce--------eeeeecCCCcceeEEEECCCCC-ceeecCCCCeEEE
Q 010256 428 SEGSA--------ESTTLEASKNPMRRQVQTPSRP-SRPLGSLSGVVRR 467 (514)
Q Consensus 428 ~~~~~--------~~~~~~~~~~~v~~~~~~~~~~-~l~s~s~d~~v~i 467 (514)
..... ......+|...|.+++|+|+++ +||++|.||+|++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~ 330 (345)
T 3fm0_A 282 DPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAF 330 (345)
T ss_dssp CTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred CCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEE
Confidence 75421 1123468999999999999985 8999999999999
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-41 Score=306.63 Aligned_cols=298 Identities=14% Similarity=0.195 Sum_probs=235.2
Q ss_pred ccccccceEEEEEcCCC-CeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccc
Q 010256 31 EVQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g-~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (514)
..+|.+.|++++|+|++ ++|++|+.|++|++|++.+.... .......+.+|.
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~------------------~~~~~~~~~~h~--------- 65 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK------------------FGVPVRSFKGHS--------- 65 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE------------------EEEEEEEEECCS---------
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc------------------ccccceEEeCCc---------
Confidence 45899999999999965 89999999999999998643321 122456788998
Q ss_pred ccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
..|.+++| ++++.+|++++.|++|++||+.+++....+..+ .+.|. +++|+|+++.+
T Consensus 66 ---~~v~~~~~--s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h--------~~~v~-------~~~~~~~~~~l--- 122 (319)
T 3frx_A 66 ---HIVQDCTL--TADGAYALSASWDKTLRLWDVATGETYQRFVGH--------KSDVM-------SVDIDKKASMI--- 122 (319)
T ss_dssp ---SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEECC--------SSCEE-------EEEECTTSCEE---
T ss_pred ---ccEEEEEE--CCCCCEEEEEeCCCEEEEEECCCCCeeEEEccC--------CCcEE-------EEEEcCCCCEE---
Confidence 88999999 677889999999999999999999876665544 24455 88999999998
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC------CCEEEEe-cCCeEEEEecc
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD------GETFISA-DDLRINLWNLE 262 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~------~~~l~s~-~d~~i~iwd~~ 262 (514)
++++.|+.|++|| +.. .+... +.+|...|.+++|.|. +..|+++ .|++|++||++
T Consensus 123 ---------~s~s~D~~i~vwd-~~~-------~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~ 184 (319)
T 3frx_A 123 ---------ISGSRDKTIKVWT-IKG-------QCLAT-LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184 (319)
T ss_dssp ---------EEEETTSCEEEEE-TTS-------CEEEE-ECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETT
T ss_pred ---------EEEeCCCeEEEEE-CCC-------CeEEE-EeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECC
Confidence 9999999999999 321 12223 3689999999999985 4488888 99999999998
Q ss_pred CCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecccc
Q 010256 263 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (514)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (514)
+.+... .+.+|...|.+++|+|++ .+|++|+.||.|++||+++++.. ..+..+ .
T Consensus 185 ~~~~~~--------~~~~h~~~v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~-------------~ 238 (319)
T 3frx_A 185 QFQIEA--------DFIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNLAAKKAM----YTLSAQ-------------D 238 (319)
T ss_dssp TTEEEE--------EECCCCSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEEE----EEEECC-------------S
T ss_pred cchhhe--------eecCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEE----EEecCC-------------C
Confidence 654332 457799999999999999 89999999999999999987652 333222 5
Q ss_pred ceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcE
Q 010256 343 SISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 422 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 422 (514)
.|.+++|+|++.+++++.+..+++|++.. ...+..+..+..... ...-..+.+++|+|||++|++|+.||.|
T Consensus 239 ~v~~~~~sp~~~~la~~~~~~i~v~~~~~-~~~~~~~~~~~~~~~-------~~~~~~v~~~~~spdg~~l~sg~~Dg~i 310 (319)
T 3frx_A 239 EVFSLAFSPNRYWLAAATATGIKVFSLDP-QYLVDDLRPEFAGYS-------KAAEPHAVSLAWSADGQTLFAGYTDNVI 310 (319)
T ss_dssp CEEEEEECSSSSEEEEEETTEEEEEEETT-EEEEEEECCCCTTCC-------GGGCCCEEEEEECTTSSEEEEEETTSCE
T ss_pred cEEEEEEcCCCCEEEEEcCCCcEEEEeCc-CeeeeccCccccccc-------cCcCcceeEEEECCCCCEEEEeecCceE
Confidence 79999999999999999888899999985 544444432211100 0001124589999999999999999999
Q ss_pred EEEecCCC
Q 010256 423 RVFGCSEG 430 (514)
Q Consensus 423 ~iwd~~~~ 430 (514)
+|||+.++
T Consensus 311 ~vWd~~t~ 318 (319)
T 3frx_A 311 RVWQVMTA 318 (319)
T ss_dssp EEEEEEEC
T ss_pred EEEEEeec
Confidence 99998754
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-40 Score=301.18 Aligned_cols=285 Identities=19% Similarity=0.331 Sum_probs=236.5
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|++++|+|+|++||+|+.||.|++|++.+++ ....+.+|.
T Consensus 19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-----------------------~~~~~~~h~---------- 65 (312)
T 4ery_A 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----------------------FEKTISGHK---------- 65 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----------------------EEEEECCCS----------
T ss_pred EcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-----------------------cchhhccCC----------
Confidence 45899999999999999999999999999999987665 445677887
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|.+++| ++++++|++++.|+.|++||+.+++....
T Consensus 66 --~~v~~~~~--~~~~~~l~s~~~d~~i~vwd~~~~~~~~~--------------------------------------- 102 (312)
T 4ery_A 66 --LGISDVAW--SSDSNLLVSASDDKTLKIWDVSSGKCLKT--------------------------------------- 102 (312)
T ss_dssp --SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCEEEE---------------------------------------
T ss_pred --CceEEEEE--cCCCCEEEEECCCCEEEEEECCCCcEEEE---------------------------------------
Confidence 88999999 56778999999999999999987653221
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
+.+|...|.+++|+|++++|+++ .|+.|++||+++.+...
T Consensus 103 --------------------------------------~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~- 143 (312)
T 4ery_A 103 --------------------------------------LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK- 143 (312)
T ss_dssp --------------------------------------EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEE-
T ss_pred --------------------------------------EcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEE-
Confidence 24677889999999999999999 99999999998665443
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
.+..|...|.+++|+|++ .+|++++.||.|++||+++++.. ..+. ..+...+..++|
T Consensus 144 -------~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~----~~~~-----------~~~~~~~~~~~~ 200 (312)
T 4ery_A 144 -------TLPAHSDPVSAVHFNRDG-SLIVSSSYDGLCRIWDTASGQCL----KTLI-----------DDDNPPVSFVKF 200 (312)
T ss_dssp -------EECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEE----EEEC-----------CSSCCCEEEEEE
T ss_pred -------EecCCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcee----eEEe-----------ccCCCceEEEEE
Confidence 456688999999999998 89999999999999999987653 1111 223357999999
Q ss_pred ecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecC
Q 010256 350 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 350 s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 428 (514)
+|++++|++++. +.|++||+.. ++.+..+..|...... +......+++++|++|+.||.|++||+.
T Consensus 201 ~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~l~sg~~dg~i~vwd~~ 267 (312)
T 4ery_A 201 SPNGKYILAATLDNTLKLWDYSK-GKCLKTYTGHKNEKYC------------IFANFSVTGGKWIVSGSEDNLVYIWNLQ 267 (312)
T ss_dssp CTTSSEEEEEETTTEEEEEETTT-TEEEEEECSSCCSSSC------------CCEEEECSSSCEEEECCTTSCEEEEETT
T ss_pred CCCCCEEEEEcCCCeEEEEECCC-CcEEEEEEecCCceEE------------EEEEEEeCCCcEEEEECCCCEEEEEECC
Confidence 999999999764 9999999997 7777777777543210 1123334688999999999999999999
Q ss_pred CCceeeeeecCCCcceeEEEECCCCCceeecC--CCCeEEE
Q 010256 429 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGS--LSGVVRR 467 (514)
Q Consensus 429 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s--~d~~v~i 467 (514)
++ .....+.+|...|..++++|+++++++++ .|++|++
T Consensus 268 ~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~ 307 (312)
T 4ery_A 268 TK-EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKL 307 (312)
T ss_dssp TC-CEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEE
T ss_pred Cc-hhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEE
Confidence 87 44578999999999999999999999986 6999998
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-40 Score=302.74 Aligned_cols=290 Identities=17% Similarity=0.204 Sum_probs=235.8
Q ss_pred eeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecc
Q 010256 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (514)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (514)
+....+.+|. +.|.+++| ++++++|++++.||+|++||+.+++....
T Consensus 46 ~~~~~l~gH~------------~~v~~~~~--s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~------------------- 92 (340)
T 1got_B 46 RTRRTLRGHL------------AKIYAMHW--GTDSRLLLSASQDGKLIIWDSYTTNKVHA------------------- 92 (340)
T ss_dssp CEEEEECCCS------------SCEEEEEE--CTTSSEEEEEETTTEEEEEETTTCCEEEE-------------------
T ss_pred hhheeecCCC------------CceEEEEE--CCCCCEEEEEeCCCcEEEEECCCCCcceE-------------------
Confidence 4556788998 89999999 56788999999999999999887653221
Q ss_pred cccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEE
Q 010256 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 250 (514)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 250 (514)
+..|...|.+++|+|++++|++
T Consensus 93 ----------------------------------------------------------~~~~~~~v~~~~~s~~~~~l~s 114 (340)
T 1got_B 93 ----------------------------------------------------------IPLRSSWVMTCAYAPSGNYVAC 114 (340)
T ss_dssp ----------------------------------------------------------EECSSSCEEEEEECTTSSEEEE
T ss_pred ----------------------------------------------------------eecCCccEEEEEECCCCCEEEE
Confidence 1456678999999999999999
Q ss_pred e-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccC
Q 010256 251 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 329 (514)
Q Consensus 251 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 329 (514)
| .|+.|++|++.+........ ..+.+|...|.++.|++++ .+++++.|+.|++||+++++.. .
T Consensus 115 ~~~d~~v~iw~~~~~~~~~~~~----~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~~----~------ 178 (340)
T 1got_B 115 GGLDNICSIYNLKTREGNVRVS----RELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQT----T------ 178 (340)
T ss_dssp EETTCEEEEEETTTCSBSCEEE----EEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEEE----E------
T ss_pred EeCCCeEEEEECccCCCcceeE----EEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcEE----E------
Confidence 9 99999999998654322211 1467799999999999987 5899999999999999987652 2
Q ss_pred CCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcC
Q 010256 330 APGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 408 (514)
Q Consensus 330 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (514)
.+.+|...|.+++|+|+++++++|+ |+.|++||++. +..+..+.+|... |.+++|+|
T Consensus 179 ------~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~-~~~~~~~~~h~~~---------------v~~v~~~p 236 (340)
T 1got_B 179 ------TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE-GMCRQTFTGHESD---------------INAICFFP 236 (340)
T ss_dssp ------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CSEEEEECCCSSC---------------EEEEEECT
T ss_pred ------EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC-CeeEEEEcCCcCC---------------EEEEEEcC
Confidence 2456778999999999999999986 59999999997 8888888887754 44999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCceeeeeec--CCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccc
Q 010256 409 DGGRVATGSYSNLFRVFGCSEGSAESTTLE--ASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFS 486 (514)
Q Consensus 409 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~ 486 (514)
++++|++|+.||.|++||+.+++.. ..+. .+...+.+++|+|++++|++|+.|+.|++.+.... .......+|.
T Consensus 237 ~~~~l~s~s~d~~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~---~~~~~~~~h~ 312 (340)
T 1got_B 237 NGNAFATGSDDATCRLFDLRADQEL-MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA---DRAGVLAGHD 312 (340)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEE-EEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEECCS
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEE-EEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC---cEeeEeecCC
Confidence 9999999999999999999987443 3333 34457999999999999999999999999443221 2222344689
Q ss_pred cceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 487 MKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 487 ~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
..|.+++|+||+++||+++ ++.++||+
T Consensus 313 ~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 313 NRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999999999999988 55688884
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-41 Score=314.67 Aligned_cols=307 Identities=17% Similarity=0.263 Sum_probs=230.0
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|++++|+|++++|++|+.||+|+|||+.+++ ....+.+|.
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~-----------------------~~~~~~~h~---------- 108 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ-----------------------KTHAIKLHC---------- 108 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE-----------------------EEEEEECCC----------
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------------------cceEEecCC----------
Confidence 45899999999999999999999999999999987665 345677887
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCC-ccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG-CGERN 189 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~l~~~ 189 (514)
..|.+++| ++++++|++++.|+.+++|++.+...... ............+.+. .+.|.|++. .+
T Consensus 109 --~~v~~~~~--s~~g~~las~~~d~~v~iw~~~~~~~~~~-~~~~~~~~~gh~~~v~-------~~~~~~~~~~~l--- 173 (380)
T 3iz6_a 109 --PWVMECAF--APNGQSVACGGLDSACSIFNLSSQADRDG-NMPVSRVLTGHKGYAS-------SCQYVPDQETRL--- 173 (380)
T ss_dssp --TTCCCCEE--CTTSSEEEECCSSSCCEEEECCCCSSCCC-SSTTCCBCCCCSSCCC-------CCBCCSSSSSCE---
T ss_pred --CCEEEEEE--CCCCCEEEEeeCCCcEEEEECCCCccccC-CccceeeccCCCcceE-------EEEEecCCCCEE---
Confidence 77999999 56788999999999999999875321000 0000000001112222 667777643 45
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC-CCCEEEEe-cCCeEEEEeccCCCce
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQS 267 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~ 267 (514)
++++.|++|++|| +....... .....+..+|...|.+++|++ ++++|++| .|++|++||++.....
T Consensus 174 ---------~s~s~D~~i~~wd-~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~ 241 (380)
T 3iz6_a 174 ---------ITGSGDQTCVLWD-VTTGQRIS--IFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRA 241 (380)
T ss_dssp ---------EEECTTSCEEEEC-TTTCCEEE--EECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCC
T ss_pred ---------EEECCCCcEEEEE-cCCCcEEE--EeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcc
Confidence 8999999999999 43322111 011122367999999999987 78999999 9999999999854433
Q ss_pred eeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEE
Q 010256 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 347 (514)
.. .+.+|...|.+++|+|++ .+|++|+.|+.|++||++++... ..+..+... ...+...|.++
T Consensus 242 ~~-------~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~lwd~~~~~~~----~~~~~~~~~-----~~~~~~~v~~~ 304 (380)
T 3iz6_a 242 VR-------TYHGHEGDINSVKFFPDG-QRFGTGSDDGTCRLFDMRTGHQL----QVYNREPDR-----NDNELPIVTSV 304 (380)
T ss_dssp CE-------EECCCSSCCCEEEECTTS-SEEEEECSSSCEEEEETTTTEEE----EEECCCCSS-----SCCSSCSCSEE
T ss_pred eE-------EECCcCCCeEEEEEecCC-CeEEEEcCCCeEEEEECCCCcEE----EEecccccc-----cccccCceEEE
Confidence 32 467899999999999999 89999999999999999988753 233222110 11223468999
Q ss_pred EEecCCCEEEEEeC-CeEEEEEccCCCCceeee----eeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcE
Q 010256 348 KFARNGRHILSRDY-MTLKLWDINMDSGPVATF----QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 422 (514)
Q Consensus 348 ~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 422 (514)
+|+|+|++|++|+. +.|++||+.. ++.+..+ .+|... |.+++|+|||++|++|+.|+.|
T Consensus 305 ~~s~~g~~l~~g~~dg~i~vwd~~~-~~~~~~~~~~~~~h~~~---------------v~~l~~s~dg~~l~sgs~D~~i 368 (380)
T 3iz6_a 305 AFSISGRLLFAGYSNGDCYVWDTLL-AEMVLNLGTLQNSHEGR---------------ISCLGLSSDGSALCTGSWDKNL 368 (380)
T ss_dssp EECSSSSEEEEECTTSCEEEEETTT-CCEEEEECCSCSSCCCC---------------CCEEEECSSSSEEEEECTTSCE
T ss_pred EECCCCCEEEEEECCCCEEEEECCC-CceEEEEecccCCCCCc---------------eEEEEECCCCCEEEEeeCCCCE
Confidence 99999999999865 9999999986 6666555 344433 3499999999999999999999
Q ss_pred EEEecCCC
Q 010256 423 RVFGCSEG 430 (514)
Q Consensus 423 ~iwd~~~~ 430 (514)
++|++...
T Consensus 369 ~iW~~~~~ 376 (380)
T 3iz6_a 369 KIWAFSGH 376 (380)
T ss_dssp EEEECCSS
T ss_pred EEEecCCC
Confidence 99999865
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-40 Score=309.65 Aligned_cols=308 Identities=14% Similarity=0.143 Sum_probs=240.1
Q ss_pred ceeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceec
Q 010256 90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG 169 (514)
Q Consensus 90 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 169 (514)
......+.+|. +.|++++| ++++.+|++|+.|++|++||+.+++.......+. ..+.
T Consensus 56 ~~~~~~l~gH~------------~~V~~~~~--sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~--------~~v~- 112 (380)
T 3iz6_a 56 LVCCRTLQGHS------------GKVYSLDW--TPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHC--------PWVM- 112 (380)
T ss_dssp CEEEEEECCCS------------SCEEEEEE--CTTSSCEEEEETTSEEEEEETTTTEEEEEEECCC--------TTCC-
T ss_pred eEEeecccccc------------cEEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCccceEEecCC--------CCEE-
Confidence 44667889998 89999999 5677899999999999999999988776665542 2333
Q ss_pred ccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC-CCEE
Q 010256 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETF 248 (514)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l 248 (514)
.++|+|+|+.+ ++++.|+.+++|+ +...............+.+|.+.|.++.|.|+ +..|
T Consensus 113 ------~~~~s~~g~~l------------as~~~d~~v~iw~-~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l 173 (380)
T 3iz6_a 113 ------ECAFAPNGQSV------------ACGGLDSACSIFN-LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRL 173 (380)
T ss_dssp ------CCEECTTSSEE------------EECCSSSCCEEEE-CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCE
T ss_pred ------EEEECCCCCEE------------EEeeCCCcEEEEE-CCCCccccCCccceeeccCCCcceEEEEEecCCCCEE
Confidence 78999999998 9999999999999 43221111111122234799999999999997 4568
Q ss_pred EEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceec
Q 010256 249 ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 327 (514)
Q Consensus 249 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 327 (514)
++| .|++|++||+++++....+ ......+|...|.+++|+|.++++|++|+.|+.|++||++..... .
T Consensus 174 ~s~s~D~~i~~wd~~~~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~---~----- 242 (380)
T 3iz6_a 174 ITGSGDQTCVLWDVTTGQRISIF---GSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRA---V----- 242 (380)
T ss_dssp EEECTTSCEEEECTTTCCEEEEE---CCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCC---C-----
T ss_pred EEECCCCcEEEEEcCCCcEEEEe---ecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcc---e-----
Confidence 888 9999999999976544321 111225688999999998743389999999999999999854321 2
Q ss_pred cCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEE
Q 010256 328 QEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 406 (514)
Q Consensus 328 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 406 (514)
..+.+|.+.|.+++|+|++++|++|++ ++|++||+++ ++.+..+..+..... .....+.+++|
T Consensus 243 -------~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~-~~~~~~~~~~~~~~~--------~~~~~v~~~~~ 306 (380)
T 3iz6_a 243 -------RTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT-GHQLQVYNREPDRND--------NELPIVTSVAF 306 (380)
T ss_dssp -------EEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTT-TEEEEEECCCCSSSC--------CSSCSCSEEEE
T ss_pred -------EEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCC-CcEEEEecccccccc--------cccCceEEEEE
Confidence 234567789999999999999999865 9999999997 777776655432210 11112458999
Q ss_pred cCCCCEEEEEeCCCcEEEEecCCCceeeeee----cCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 407 SGDGGRVATGSYSNLFRVFGCSEGSAESTTL----EASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 407 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+|+|++|++|+.||.|++||+.+++.. ..+ .+|...|.+++|+|++++|++||.|++|++
T Consensus 307 s~~g~~l~~g~~dg~i~vwd~~~~~~~-~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~i 370 (380)
T 3iz6_a 307 SISGRLLFAGYSNGDCYVWDTLLAEMV-LNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKI 370 (380)
T ss_dssp CSSSSEEEEECTTSCEEEEETTTCCEE-EEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEE
T ss_pred CCCCCEEEEEECCCCEEEEECCCCceE-EEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEE
Confidence 999999999999999999999877543 333 689999999999999999999999999999
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-40 Score=303.25 Aligned_cols=306 Identities=13% Similarity=0.190 Sum_probs=230.1
Q ss_pred ccccccceEEEEE-----cC-CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccc
Q 010256 31 EVQEVDIISAIEF-----DK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFD 104 (514)
Q Consensus 31 ~~~h~~~V~~~~~-----s~-~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 104 (514)
..+|.+.|++++| ++ ++++||+|+.|++|+|||+.+.+..+ ........+.+|.
T Consensus 17 l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~----------------~~~~~~~~l~~h~---- 76 (343)
T 2xzm_R 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG----------------YFGIPHKALTGHN---- 76 (343)
T ss_dssp EECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS----------------BSEEEEEEECCCS----
T ss_pred eccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc----------------ccccccchhccCC----
Confidence 4489999999999 77 99999999999999999987654210 0122445678898
Q ss_pred cccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCC
Q 010256 105 YLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (514)
Q Consensus 105 ~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 184 (514)
..|.+++| ++++.++++++.|++|++||+++++....+..+ .+.|. +++|+|+++
T Consensus 77 --------~~V~~~~~--~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h--------~~~v~-------~v~~sp~~~ 131 (343)
T 2xzm_R 77 --------HFVSDLAL--SQENCFAISSSWDKTLRLWDLRTGTTYKRFVGH--------QSEVY-------SVAFSPDNR 131 (343)
T ss_dssp --------SCEEEEEE--CSSTTEEEEEETTSEEEEEETTSSCEEEEEECC--------CSCEE-------EEEECSSTT
T ss_pred --------CceEEEEE--CCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCC--------CCcEE-------EEEECCCCC
Confidence 88999999 567789999999999999999998876655544 24455 889999999
Q ss_pred ccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCC----------CEEEEe-cC
Q 010256 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG----------ETFISA-DD 253 (514)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----------~~l~s~-~d 253 (514)
.+ ++++.|+.|++|| +..... .......+|...|.+++|+|++ .+|+++ .|
T Consensus 132 ~l------------~s~~~d~~i~~wd-~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d 193 (343)
T 2xzm_R 132 QI------------LSAGAEREIKLWN-ILGECK-----FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWD 193 (343)
T ss_dssp EE------------EEEETTSCEEEEE-SSSCEE-----EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETT
T ss_pred EE------------EEEcCCCEEEEEe-ccCCce-----eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCC
Confidence 98 9999999999999 321110 0001124788999999999987 789998 99
Q ss_pred CeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCc
Q 010256 254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT 333 (514)
Q Consensus 254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 333 (514)
++|++||.. .+ ... .+.+|...|.+++|+|++ ++|++|+.|+.|++||++..... ...+
T Consensus 194 ~~i~iwd~~-~~-~~~-------~~~~h~~~v~~~~~s~~g-~~l~sgs~dg~v~iwd~~~~~~~---~~~~-------- 252 (343)
T 2xzm_R 194 GRLKVWNTN-FQ-IRY-------TFKAHESNVNHLSISPNG-KYIATGGKDKKLLIWDILNLTYP---QREF-------- 252 (343)
T ss_dssp SEEEEEETT-TE-EEE-------EEECCSSCEEEEEECTTS-SEEEEEETTCEEEEEESSCCSSC---SEEE--------
T ss_pred CEEEEEcCC-Cc-eeE-------EEcCccccceEEEECCCC-CEEEEEcCCCeEEEEECCCCccc---ceee--------
Confidence 999999954 22 221 456789999999999999 89999999999999999543321 1111
Q ss_pred cceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCcee--eeeeccccccccccccccCCccceeeEEEcCCCC
Q 010256 334 RSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVA--TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG 411 (514)
Q Consensus 334 ~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 411 (514)
.+...|.+++|+|++++++++.++.|++||+.+ .+... .+..+. ....... ......+.+++|+|+|+
T Consensus 253 -----~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~-~~~~~~~~~~~~~--~~~~~~~--~~~~~~v~~~~~sp~g~ 322 (343)
T 2xzm_R 253 -----DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMT-QSKAPVCTIEAEP--ITKAEGQ--KGKNPQCTSLAWNALGK 322 (343)
T ss_dssp -----ECSSCEEEEEECSSSCEEEEEESSCEEEEESSS-CCSCSEEECCCCS--GGGBTTB--CCSCCCEEEEEECSSSC
T ss_pred -----cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCC-CCCCceEEeecCc--chhhhhh--cCCCCceEEEEECCCCC
Confidence 122469999999999999988888999999986 44433 332111 0000000 01111356999999999
Q ss_pred EEEEEeCCCcEEEEecCCC
Q 010256 412 RVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 412 ~l~s~~~dg~i~iwd~~~~ 430 (514)
+|++|+.||.|++|+++++
T Consensus 323 ~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 323 KLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CEEEEETTSEEEEEEEEEE
T ss_pred eEEEecCCceEEEEEEEcc
Confidence 9999999999999998754
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-41 Score=319.34 Aligned_cols=339 Identities=13% Similarity=0.165 Sum_probs=257.9
Q ss_pred cccccceEEEEEcCCCC-eEEEe----------cCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCC
Q 010256 32 VQEVDIISAIEFDKSGD-HLATG----------DRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHE 100 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~-~l~tg----------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 100 (514)
+.+...|++++|+|+|+ +||+| +.||.|+||++.+++.. +.... ..|.
T Consensus 9 l~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~--------------------~~~~~-~~~~ 67 (416)
T 2pm9_A 9 LAEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE--------------------KPIAS-LQVD 67 (416)
T ss_dssp -CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC--------------------SCSCC-CCCS
T ss_pred HhhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC--------------------cEEEE-EecC
Confidence 45667899999999987 99999 88999999999876521 01111 1344
Q ss_pred CccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCc----cEEEEEeeccCCCccccCCcceecccccCCc
Q 010256 101 PEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQE----KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIP 176 (514)
Q Consensus 101 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 176 (514)
..|.+++| ++++.+|++++.||.|++|++.+ .+.......+ .+.+. .
T Consensus 68 ------------~~v~~~~~--s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h--------~~~v~-------~ 118 (416)
T 2pm9_A 68 ------------SKFNDLDW--SHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNH--------SSSVK-------T 118 (416)
T ss_dssp ------------SCEEEEEE--CSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCS--------SSCCC-------E
T ss_pred ------------CceEEEEE--CCCCCeEEEEccCCeEEEeecccccccccchhhccCC--------ccceE-------E
Confidence 78999999 56778999999999999999987 2233333222 23333 8
Q ss_pred eeeccC-CCccccccCCCCCCcccCCCCCCcEEeceeeccccccc---cccccccccccCccCeEEEEECCC-CCEEEEe
Q 010256 177 KSYMAN-GGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNL---VAGCRRIYAHAHDYHINSISNNSD-GETFISA 251 (514)
Q Consensus 177 ~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~---~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~ 251 (514)
++|+|+ ++.+ ++++.|+.|++|| +...+... ..... .....|...|.+++|+|+ +.+|+++
T Consensus 119 ~~~~~~~~~~l------------~s~~~dg~v~iwd-~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~ 184 (416)
T 2pm9_A 119 VKFNAKQDNVL------------ASGGNNGEIFIWD-MNKCTESPSNYTPLTP-GQSMSSVDEVISLAWNQSLAHVFASA 184 (416)
T ss_dssp EEECSSSTTBE------------EEECSSSCEEBCB-TTTTSSCTTTCCCBCC-CCSCCSSCCCCEEEECSSCTTEEEEE
T ss_pred EEEcCCCCCEE------------EEEcCCCeEEEEE-CCCCcccccccccccc-ccccCCCCCeeEEEeCCCCCcEEEEE
Confidence 899998 7777 9999999999999 44332100 00011 112678999999999999 7899998
Q ss_pred -cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCC---eEEEEEcCCCccccccccceec
Q 010256 252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG---SIRLIDMRQSALCDTHSKLFEE 327 (514)
Q Consensus 252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~~~~~~~ 327 (514)
.|+.|++||+++.+....+. . .....+|...|.+++|+|++..++++++.|+ .|++||++++... ...
T Consensus 185 ~~dg~v~iwd~~~~~~~~~~~-~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~---~~~--- 256 (416)
T 2pm9_A 185 GSSNFASIWDLKAKKEVIHLS-Y-TSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP---LQT--- 256 (416)
T ss_dssp SSSSCEEEEETTTTEEEEEEC-C-CCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC---SBC---
T ss_pred cCCCCEEEEECCCCCcceEEe-c-cccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC---cEE---
Confidence 99999999998665443321 0 0112234788999999999767999999999 9999999986422 222
Q ss_pred cCCCCccceee-ccccceeEEEEec-CCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeE
Q 010256 328 QEAPGTRSFFT-EIIASISDIKFAR-NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC 404 (514)
Q Consensus 328 ~~~~~~~~~~~-~~~~~i~~~~~s~-~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 404 (514)
+. +|...|.+++|+| ++++|++++ |+.|++||+++ ++++..+..|...+ .++
T Consensus 257 ---------~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~-~~~~~~~~~~~~~v---------------~~~ 311 (416)
T 2pm9_A 257 ---------LNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES-AEQLSQFPARGNWC---------------FKT 311 (416)
T ss_dssp ---------CCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS-CCEEEEEECSSSCC---------------CCE
T ss_pred ---------eecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC-CccceeecCCCCce---------------EEE
Confidence 33 5668999999999 999999976 49999999997 88888888887653 389
Q ss_pred EEcCCC-CEEEEEeCCCcEEEEecCCCceeeee----------------------------------ecCCCcceeEEEE
Q 010256 405 CLSGDG-GRVATGSYSNLFRVFGCSEGSAESTT----------------------------------LEASKNPMRRQVQ 449 (514)
Q Consensus 405 ~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~----------------------------------~~~~~~~v~~~~~ 449 (514)
+|+|++ ++|++++.||.|++||+.+....... ...|..++..++|
T Consensus 312 ~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (416)
T 2pm9_A 312 KFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHW 391 (416)
T ss_dssp EECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEE
T ss_pred EECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEE
Confidence 999999 89999999999999999876432211 0116778889999
Q ss_pred CCCCCceeecCCCCeEEE
Q 010256 450 TPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 450 ~~~~~~l~s~s~d~~v~i 467 (514)
+|++++|++++.|+.|++
T Consensus 392 s~dg~~la~~~~d~~v~~ 409 (416)
T 2pm9_A 392 AFGGKLVQITPDGKGVSI 409 (416)
T ss_dssp ETTTEEECBCTTSSCBCC
T ss_pred eeCCeEEEEeCCCCeEEE
Confidence 999999999999999998
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-39 Score=299.16 Aligned_cols=299 Identities=15% Similarity=0.203 Sum_probs=230.5
Q ss_pred eeeeeeccCCCcccccccccccc-ceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceec
Q 010256 91 RYKTEFQSHEPEFDYLKSLEIEE-KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG 169 (514)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~-~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 169 (514)
..+..+.+|. + .|.+++| +++|++|++++.|++|++||+.++.......
T Consensus 6 ~~~~~~~~h~------------~~~v~~l~~--sp~g~~las~~~D~~i~iw~~~~~~~~~~~~---------------- 55 (345)
T 3fm0_A 6 VLLGRVPAHP------------DSRCWFLAW--NPAGTLLASCGGDRRIRIWGTEGDSWICKSV---------------- 55 (345)
T ss_dssp EEEEEECCST------------TSCEEEEEE--CTTSSCEEEEETTSCEEEEEEETTEEEEEEE----------------
T ss_pred EEeeeecCCC------------CCcEEEEEE--CCCCCEEEEEcCCCeEEEEEcCCCcceeeee----------------
Confidence 4566788887 5 8999999 5678899999999999999987764321100
Q ss_pred ccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEE
Q 010256 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 249 (514)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 249 (514)
...+|...|.+++|+|++++|+
T Consensus 56 ----------------------------------------------------------~~~~h~~~v~~~~~sp~g~~l~ 77 (345)
T 3fm0_A 56 ----------------------------------------------------------LSEGHQRTVRKVAWSPCGNYLA 77 (345)
T ss_dssp ----------------------------------------------------------ECSSCSSCEEEEEECTTSSEEE
T ss_pred ----------------------------------------------------------eccccCCcEEEEEECCCCCEEE
Confidence 1257889999999999999999
Q ss_pred Ee-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceecc
Q 010256 250 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 328 (514)
Q Consensus 250 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 328 (514)
+| .|++|++||+........ ..+.+|...|.+++|+|++ ++|++|+.|+.|++||++++.... .
T Consensus 78 s~s~D~~v~iw~~~~~~~~~~------~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~~----~---- 142 (345)
T 3fm0_A 78 SASFDATTCIWKKNQDDFECV------TTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYE----C---- 142 (345)
T ss_dssp EEETTSCEEEEEECCC-EEEE------EEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSCEE----E----
T ss_pred EEECCCcEEEEEccCCCeEEE------EEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCCeE----E----
Confidence 99 999999999985542211 1567899999999999999 899999999999999998754210 0
Q ss_pred CCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCC--ceeeeeeccccccccccccccCCccceeeEE
Q 010256 329 EAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSG--PVATFQVHEHLRPKLCDLYENDSIFDKFECC 405 (514)
Q Consensus 329 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 405 (514)
...+.+|...|.+++|+|++++|++++. +.|++||... +. +...+.+|... |++++
T Consensus 143 -----~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~-~~~~~~~~~~~h~~~---------------v~~l~ 201 (345)
T 3fm0_A 143 -----VSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEE-DDWVCCATLEGHEST---------------VWSLA 201 (345)
T ss_dssp -----EEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEET-TEEEEEEEECCCSSC---------------EEEEE
T ss_pred -----EEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecC-CCEEEEEEecCCCCc---------------eEEEE
Confidence 1224567789999999999999999865 9999999986 43 34566666654 45999
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCCCce--------------eeeeecC-CCcceeEEEECCCCCceeecCCCCeEEEeeC
Q 010256 406 LSGDGGRVATGSYSNLFRVFGCSEGSA--------------ESTTLEA-SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKG 470 (514)
Q Consensus 406 ~s~~~~~l~s~~~dg~i~iwd~~~~~~--------------~~~~~~~-~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~ 470 (514)
|+|+|++|++++.|+.|++|+...... ...++.+ |...|+.++|+|++..|++++.|+.|++.+.
T Consensus 202 ~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~ 281 (345)
T 3fm0_A 202 FDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQE 281 (345)
T ss_dssp ECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEE
T ss_pred ECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEe
Confidence 999999999999999999999643211 1123444 8889999999999999999999999999322
Q ss_pred CC---CCccc--cCC-cccccccceEEEEEcCCC-CEEEEEe-cCcEEEEe
Q 010256 471 AD---NSALD--ANG-NAFDFSMKLLHLAWHPSE-NSIACAA-SNSLYMYY 513 (514)
Q Consensus 471 ~~---~~~~~--~~~-~~~~~~~~v~~~~~spd~-~~l~~~~-~~~~~i~~ 513 (514)
.. +.... +.. ....|...|++++|+|++ .+||+++ ++.+++|.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~ 332 (345)
T 3fm0_A 282 DPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWK 332 (345)
T ss_dssp CTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred CCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEE
Confidence 11 11000 001 112588999999999998 4888887 66788886
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-39 Score=311.30 Aligned_cols=335 Identities=16% Similarity=0.196 Sum_probs=251.6
Q ss_pred cccccccceEEEEEcCCCC-eEEEecCCCeEEEEEe----cCCcccCCcccccccccccccCCccceeeeee------cc
Q 010256 30 EEVQEVDIISAIEFDKSGD-HLATGDRGGRVVLFER----TDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF------QS 98 (514)
Q Consensus 30 ~~~~h~~~V~~~~~s~~g~-~l~tg~~dg~i~iw~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 98 (514)
....|.+.|++++|+|+|+ +||+|+.||.|++|++ .+++..- .+. +...+...+ .+
T Consensus 40 ~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~----~~~---------~~~~~~~~~~~~~~~~~ 106 (425)
T 1r5m_A 40 KEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYW----KLT---------IIAELRHPFALSASSGK 106 (425)
T ss_dssp EEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CE----EEE---------EEEEEECCCCCC-----
T ss_pred eeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccc----ccc---------ccccccccccccccccC
Confidence 3456779999999999999 9999999999999999 6655100 000 000011111 22
Q ss_pred CCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCcee
Q 010256 99 HEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS 178 (514)
Q Consensus 99 h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 178 (514)
|. ..|.+++| ++++.+|++++.||.|++||. +++....
T Consensus 107 ~~------------~~v~~~~~--s~~~~~l~~~~~dg~i~i~~~-~~~~~~~--------------------------- 144 (425)
T 1r5m_A 107 TT------------NQVTCLAW--SHDGNSIVTGVENGELRLWNK-TGALLNV--------------------------- 144 (425)
T ss_dssp -C------------BCEEEEEE--CTTSSEEEEEETTSCEEEEET-TSCEEEE---------------------------
T ss_pred CC------------CceEEEEE--cCCCCEEEEEeCCCeEEEEeC-CCCeeee---------------------------
Confidence 44 78999999 567889999999999999993 3321110
Q ss_pred eccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEE
Q 010256 179 YMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRIN 257 (514)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~ 257 (514)
+.+|...|.+++|+|++++|+++ .|+.|+
T Consensus 145 --------------------------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 174 (425)
T 1r5m_A 145 --------------------------------------------------LNFHRAPIVSVKWNKDGTHIISMDVENVTI 174 (425)
T ss_dssp --------------------------------------------------ECCCCSCEEEEEECTTSSEEEEEETTCCEE
T ss_pred --------------------------------------------------ccCCCccEEEEEECCCCCEEEEEecCCeEE
Confidence 24677889999999999999999 899999
Q ss_pred EEeccCCCceeeeeccCCCcccccCCc---------------eEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccc
Q 010256 258 LWNLEISNQSFNIVDVKPANMEDLTEV---------------ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS 322 (514)
Q Consensus 258 iwd~~~~~~~~~~~~~~~~~~~~~~~~---------------i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 322 (514)
+||+++++....+ ..+... +.++.|+|++ .+++++.++.|++||+++++..
T Consensus 175 iwd~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~---- 240 (425)
T 1r5m_A 175 LWNVISGTVMQHF--------ELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPT---- 240 (425)
T ss_dssp EEETTTTEEEEEE--------CCC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCS----
T ss_pred EEECCCCcEEEEe--------eccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCcee----
Confidence 9999866544322 223333 8899999986 6889999999999999887542
Q ss_pred cceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccce
Q 010256 323 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 401 (514)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 401 (514)
.. +..|...|.+++|+|++++|++++ ++.|++||+.. ++.+..+..|... +
T Consensus 241 ~~------------~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~---------------i 292 (425)
T 1r5m_A 241 GK------------LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN-GNSQNCFYGHSQS---------------I 292 (425)
T ss_dssp EE------------ECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS-BSCSEEECCCSSC---------------E
T ss_pred ee------------eccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-CccceEecCCCcc---------------E
Confidence 22 344667899999999999999986 49999999997 7777777766554 4
Q ss_pred eeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCC-------
Q 010256 402 FECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNS------- 474 (514)
Q Consensus 402 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~------- 474 (514)
.+++|+|++ +|++++.|+.|++||+.+++ ....+..|..++..+.|+|++++|++++.|+.|++++-....
T Consensus 293 ~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~ 370 (425)
T 1r5m_A 293 VSASWVGDD-KVISCSMDGSVRLWSLKQNT-LLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLY 370 (425)
T ss_dssp EEEEEETTT-EEEEEETTSEEEEEETTTTE-EEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC------
T ss_pred EEEEECCCC-EEEEEeCCCcEEEEECCCCc-EeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeee
Confidence 489999999 99999999999999999874 457888999999999999999999999999999993221100
Q ss_pred ----------ccccCCccccccc--ceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 475 ----------ALDANGNAFDFSM--KLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 475 ----------~~~~~~~~~~~~~--~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
..........|.. .|++++|+|++++|++++ ++.+++|.
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 422 (425)
T 1r5m_A 371 GNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVA 422 (425)
T ss_dssp --------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEE
T ss_pred cccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEe
Confidence 0001222234554 999999999999999887 55688886
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-39 Score=336.70 Aligned_cols=362 Identities=15% Similarity=0.172 Sum_probs=282.6
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|++++|+|+|++||+|+.||.|+|||+.+++ ....+.+|.
T Consensus 9 ~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~-----------------------~~~~~~~~~---------- 55 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV-----------------------EVRSIQVTE---------- 55 (814)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-----------------------EEEEEECCS----------
T ss_pred eecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCc-----------------------eEEEEecCC----------
Confidence 35899999999999999999999999999999987765 346677887
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|.+++|+ +++.+|++++.||.|++||+.+++.......+ .+.+. .++|+|+++.+
T Consensus 56 --~~v~~~~~s--~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~--------~~~v~-------~~~~s~~~~~l---- 112 (814)
T 3mkq_A 56 --TPVRAGKFI--ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH--------PDYIR-------SIAVHPTKPYV---- 112 (814)
T ss_dssp --SCEEEEEEE--GGGTEEEEEETTSEEEEEETTTCCEEEEEECC--------SSCEE-------EEEECSSSSEE----
T ss_pred --CcEEEEEEe--CCCCEEEEEeCCCeEEEEECCCCcEEEEEecC--------CCCEE-------EEEEeCCCCEE----
Confidence 889999995 56779999999999999999998876665544 24454 88999999988
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC-CCCEEEEe-cCCeEEEEeccCCCcee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSF 268 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~ 268 (514)
++++.++.|++|+ +.... .... .+.+|...|.+++|+| ++..|+++ .|+.|++||+.......
T Consensus 113 --------~~~~~dg~i~vw~-~~~~~-----~~~~-~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~ 177 (814)
T 3mkq_A 113 --------LSGSDDLTVKLWN-WENNW-----ALEQ-TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177 (814)
T ss_dssp --------EEEETTSEEEEEE-GGGTS-----EEEE-EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSE
T ss_pred --------EEEcCCCEEEEEE-CCCCc-----eEEE-EEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccee
Confidence 9999999999999 32211 1122 2378999999999999 88899999 99999999998665443
Q ss_pred eeeccCCCcccccCCceEEEEEec--CCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeE
Q 010256 269 NIVDVKPANMEDLTEVITSAEFHP--THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (514)
Q Consensus 269 ~~~~~~~~~~~~~~~~i~~v~~~p--~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 346 (514)
.+ ...+...+.+++|+| ++ .++++++.||.|++||+++++.. .. +.+|...|.+
T Consensus 178 ~~-------~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~----~~------------~~~~~~~v~~ 233 (814)
T 3mkq_A 178 TL-------TTGQERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQTKSCV----AT------------LEGHMSNVSF 233 (814)
T ss_dssp EE-------ECCCTTCCCEEEECCSTTC-CEEEEECTTSEEEEEETTTTEEE----EE------------EECCSSCEEE
T ss_pred EE-------ecCCCCCEEEEEEEECCCC-CEEEEEeCCCEEEEEECCCCcEE----EE------------EcCCCCCEEE
Confidence 32 123447899999999 87 89999999999999999887652 22 4456688999
Q ss_pred EEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCC--EEEEEeCCCcEE
Q 010256 347 IKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG--RVATGSYSNLFR 423 (514)
Q Consensus 347 ~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~s~~~dg~i~ 423 (514)
++|+|+++++++++. |.|++||+.+ ++.+..+..+... +.+++|+|++. ++++ +.|+.+.
T Consensus 234 ~~~~~~~~~l~~~~~dg~v~vwd~~~-~~~~~~~~~~~~~---------------v~~~~~~~~~~~~~~~~-~~~~~~~ 296 (814)
T 3mkq_A 234 AVFHPTLPIIISGSEDGTLKIWNSST-YKVEKTLNVGLER---------------SWCIATHPTGRKNYIAS-GFDNGFT 296 (814)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTT-CSEEEEECCSSSS---------------EEEEEECTTCGGGEEEE-EETTEEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCC-CcEEEEeecCCCc---------------EEEEEEccCCCceEEEE-EeCCCEE
Confidence 999999999999864 9999999997 7888877766543 44899999987 4554 4567788
Q ss_pred EEecCCCceee------------------------------------------eeecCCCcceeEEEECCCCCceeecCC
Q 010256 424 VFGCSEGSAES------------------------------------------TTLEASKNPMRRQVQTPSRPSRPLGSL 461 (514)
Q Consensus 424 iwd~~~~~~~~------------------------------------------~~~~~~~~~v~~~~~~~~~~~l~s~s~ 461 (514)
+|++....... ..+..+...+..++|+|+++++++++
T Consensus 297 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~- 375 (814)
T 3mkq_A 297 VLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG- 375 (814)
T ss_dssp EEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-
T ss_pred EEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-
Confidence 88876432110 11233455678999999999999998
Q ss_pred CCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEec-CcEEEEe
Q 010256 462 SGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS-NSLYMYY 513 (514)
Q Consensus 462 d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~-~~~~i~~ 513 (514)
|+.+.+++-. .....+.+.|.+++|+||+++||+++. +.+.+|.
T Consensus 376 ~~~~~i~~~~--------~~~~~~~~~i~~~~~spdg~~la~~~~~g~v~l~~ 420 (814)
T 3mkq_A 376 DGEYVIYTAL--------AWRNKAFGKCQDFVWGPDSNSYALIDETGQIKYYK 420 (814)
T ss_dssp TTEEEEEETT--------TTEEEEEEECSEEEECTTSSCEEEECTTCCEEEEE
T ss_pred CCEEEEEECc--------cccccCCCceEEEEEeCCCCeEEEEeCCCcEEEEE
Confidence 8999884321 111224578889999999999998874 4577773
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-39 Score=297.76 Aligned_cols=302 Identities=14% Similarity=0.189 Sum_probs=233.1
Q ss_pred ccccccceEEEEEcCC-CCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccc
Q 010256 31 EVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~-g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (514)
..+|.+.|++|+|+|+ +++||||+.||+|+|||+.+.+.. .......+.+|.
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~------------------~~~~~~~l~~h~--------- 86 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN------------------YGIPQRALRGHS--------- 86 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC------------------SEEEEEEECCCS---------
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc------------------cceeeEEEeCCC---------
Confidence 4589999999999997 689999999999999999866532 223456788898
Q ss_pred ccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
..|.+++| ++++++|++++.|+.|++|+.............. ..+. ...++++++.+
T Consensus 87 ---~~V~~~~~--s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~--------~~~~-------~~~~~~~~~~l--- 143 (340)
T 4aow_A 87 ---HFVSDVVI--SSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHT--------KDVL-------SVAFSSDNRQI--- 143 (340)
T ss_dssp ---SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS--------SCEE-------EEEECTTSSCE---
T ss_pred ---CCEEEEEE--CCCCCEEEEEcccccceEEeecccceeeeecCCC--------Ccee-------EEEEeecCccc---
Confidence 88999999 6688899999999999999999887665554432 1222 56778888887
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCC--CEEEEe-cCCeEEEEeccCCCc
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG--ETFISA-DDLRINLWNLEISNQ 266 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~-~d~~i~iwd~~~~~~ 266 (514)
++++.|+.+++|| ..... .......+|...+..++|++++ .+++++ .|+.|++||+++.+.
T Consensus 144 ---------~s~s~d~~~~~~d-~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~ 207 (340)
T 4aow_A 144 ---------VSGSRDKTIKLWN-TLGVC------KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL 207 (340)
T ss_dssp ---------EEEETTSCEEEEC-TTSCE------EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEE
T ss_pred ---------eeecCCCeEEEEE-eCCCc------eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCce
Confidence 9999999999999 32211 1122236889999999998864 567777 899999999986554
Q ss_pred eeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeE
Q 010256 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (514)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 346 (514)
.. .+.+|...|++++|+|++ ++|++|+.|+.|++||+++.+.. ..+.. ...|.+
T Consensus 208 ~~--------~~~~h~~~v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~~----~~~~~-------------~~~v~~ 261 (340)
T 4aow_A 208 KT--------NHIGHTGYLNTVTVSPDG-SLCASGGKDGQAMLWDLNEGKHL----YTLDG-------------GDIINA 261 (340)
T ss_dssp EE--------EECCCSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEEE----EEEEC-------------SSCEEE
T ss_pred ee--------EecCCCCcEEEEEECCCC-CEEEEEeCCCeEEEEEeccCcee----eeecC-------------CceEEe
Confidence 33 456789999999999999 89999999999999999987652 33322 257999
Q ss_pred EEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEe
Q 010256 347 IKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (514)
Q Consensus 347 ~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 426 (514)
+.|+|++.+++++.++.|++||++. +..+..+..+..... .......|++++|+|||++|++|+.||.|+|||
T Consensus 262 ~~~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~------~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 262 LCFSPNRYWLCAATGPSIKIWDLEG-KIIVDELKQEVISTS------SKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp EEECSSSSEEEEEETTEEEEEETTT-TEEEEEECCC-------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eecCCCCceeeccCCCEEEEEECCC-CeEEEeccccceeee------ccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 9999999888888899999999986 555555443221100 001112366999999999999999999999999
Q ss_pred cCCCc
Q 010256 427 CSEGS 431 (514)
Q Consensus 427 ~~~~~ 431 (514)
+++|.
T Consensus 335 ~~tGt 339 (340)
T 4aow_A 335 VTIGT 339 (340)
T ss_dssp EEC--
T ss_pred CCCcC
Confidence 99874
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-39 Score=296.71 Aligned_cols=295 Identities=15% Similarity=0.252 Sum_probs=215.0
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeee-cc-CCCccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF-QS-HEPEFDYLKS 108 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~~~~~~~ 108 (514)
..+|.+.|++++|+|+ +||+|+.|+.|++|++.++.. .....+ .+ |.
T Consensus 10 ~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~---------------------~~~~~~~~~~h~-------- 58 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF---------------------TLIDVLDETAHK-------- 58 (330)
T ss_dssp EECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC---------------------EEEEEECTTCCC--------
T ss_pred eccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe---------------------EEEEEEecCCcc--------
Confidence 3479999999999987 999999999999999875431 122333 33 76
Q ss_pred cccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccc
Q 010256 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (514)
Q Consensus 109 ~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (514)
..|.+++| ++++.+|++++.|++|++|++....... ..
T Consensus 59 ----~~v~~v~~--sp~~~~las~s~D~~v~iw~~~~~~~~~---~~--------------------------------- 96 (330)
T 2hes_X 59 ----KAIRSVAW--RPHTSLLAAGSFDSTVSIWAKEESADRT---FE--------------------------------- 96 (330)
T ss_dssp ----SCEEEEEE--CTTSSEEEEEETTSCEEEEEC----------CC---------------------------------
T ss_pred ----CCEEEEEE--CCCCCEEEEEeCCCcEEEEEcccCcCcc---cc---------------------------------
Confidence 88999999 5677899999999999999986432000 00
Q ss_pred ccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCce
Q 010256 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQS 267 (514)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 267 (514)
..+... +.+|...|.+++|+|++++|++| .|++|++||++.....
T Consensus 97 ---------------------------------~~~~~~-~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~ 142 (330)
T 2hes_X 97 ---------------------------------MDLLAI-IEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEE 142 (330)
T ss_dssp ---------------------------------CEEEEE-EC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCC
T ss_pred ---------------------------------ceeEEE-EcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCC
Confidence 000111 36899999999999999999999 9999999999543322
Q ss_pred eeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEE
Q 010256 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 347 (514)
...+ ..+.+|...|.+++|+|++ .+|++|+.|+.|++||++++... .+ ..+.+|...|.++
T Consensus 143 ~~~~----~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~iW~~~~~~~~--~~------------~~~~~h~~~v~~~ 203 (330)
T 2hes_X 143 YECI----SVLQEHSQDVKHVIWHPSE-ALLASSSYDDTVRIWKDYDDDWE--CV------------AVLNGHEGTVWSS 203 (330)
T ss_dssp CEEE----EEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEEE--EE------------EEECCCSSCEEEE
T ss_pred eEEE----EEeccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCCee--EE------------EEccCCCCcEEEE
Confidence 1111 1467799999999999998 89999999999999998765210 01 2356677899999
Q ss_pred EEecC--CCEEEEEe-CCeEEEEEccCCC-------Cceeeeee-ccccccccccccccCCccceeeEEEcCCCCEEEEE
Q 010256 348 KFARN--GRHILSRD-YMTLKLWDINMDS-------GPVATFQV-HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 416 (514)
Q Consensus 348 ~~s~~--g~~l~~~~-~~~i~iwd~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 416 (514)
+|+|+ +.+|++++ |++|++||+.... .....+.. |.. .|.+++|++++ +|+++
T Consensus 204 ~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~---------------~v~~v~~s~~~-~l~s~ 267 (330)
T 2hes_X 204 DFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR---------------QVYNVAWGFNG-LIASV 267 (330)
T ss_dssp EECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSS---------------CEEEEEECTTS-CEEEE
T ss_pred EecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccccccc---------------ceEEEEEcCCC-EEEEE
Confidence 99998 77888876 5999999997521 11122221 222 25599999665 79999
Q ss_pred eCCCcEEEEecCCCcee--eeeecCCCc-ceeEEEECC--CCCceeecCCCCeEEE
Q 010256 417 SYSNLFRVFGCSEGSAE--STTLEASKN-PMRRQVQTP--SRPSRPLGSLSGVVRR 467 (514)
Q Consensus 417 ~~dg~i~iwd~~~~~~~--~~~~~~~~~-~v~~~~~~~--~~~~l~s~s~d~~v~i 467 (514)
+.||.|++|+..++... ...+.+|.. .|..++|+| ++++|++++.|++|++
T Consensus 268 ~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~ 323 (330)
T 2hes_X 268 GADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNF 323 (330)
T ss_dssp ETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEE
T ss_pred eCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEE
Confidence 99999999999876422 233467877 899999999 7899999999999999
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-40 Score=304.17 Aligned_cols=244 Identities=10% Similarity=0.106 Sum_probs=187.4
Q ss_pred ccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEE
Q 010256 230 HAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 309 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~ 309 (514)
.+|...|.+++|+|++.+++++.||+|++||+.+++..... .....+|...|++++|+|++ ++|++|+.|+.|++
T Consensus 91 ~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~----~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~i 165 (357)
T 4g56_B 91 VQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVN----KFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKV 165 (357)
T ss_dssp EECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCC----CEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEE
T ss_pred CCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEE----eeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEE
Confidence 46778899999999997776669999999999866543211 11345789999999999999 89999999999999
Q ss_pred EEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCC-EEEEEe-CCeEEEEEccCCCCceeeeeecccccc
Q 010256 310 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR-HILSRD-YMTLKLWDINMDSGPVATFQVHEHLRP 387 (514)
Q Consensus 310 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~ 387 (514)
||+++++.. . .+.+|...|.+++|+|++. ++++++ |++|++||+++ +++...+..+....
T Consensus 166 wd~~~~~~~----~------------~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~-~~~~~~~~~~~~~~- 227 (357)
T 4g56_B 166 WDLSQKAVL----K------------SYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK-PKPATRIDFCASDT- 227 (357)
T ss_dssp EETTTTEEE----E------------EECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTS-SSCBCBCCCTTCCS-
T ss_pred EECCCCcEE----E------------EEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCC-Cceeeeeeeccccc-
Confidence 999987652 2 2455678999999999875 566654 59999999987 66665554332211
Q ss_pred ccccccccCCccceeeEEEcCC-CCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCC-CceeecCCCCeE
Q 010256 388 KLCDLYENDSIFDKFECCLSGD-GGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR-PSRPLGSLSGVV 465 (514)
Q Consensus 388 ~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~s~d~~v 465 (514)
.+.+++|+|+ +.+|++|+.|+.|++||+.+++ ...++.+|..+|.+++|+|++ ++|++++.|++|
T Consensus 228 ------------~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i 294 (357)
T 4g56_B 228 ------------IPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD-SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTV 294 (357)
T ss_dssp ------------CEEEEEECTTSTTEEEEEESSSCEEEEESSCGG-GCEEECCCSSCEEEEEECSSSSCCEEEEETTSCE
T ss_pred ------------cccchhhhhcccceEEEeecccceeEEECCCCc-EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEE
Confidence 1458999997 4689999999999999999874 447899999999999999987 689999999999
Q ss_pred EEeeCCCCCccccCCcccccccceEEEEEcC-CCCEEEEEe-cCcEEEEe
Q 010256 466 RRVKGADNSALDANGNAFDFSMKLLHLAWHP-SENSIACAA-SNSLYMYY 513 (514)
Q Consensus 466 ~i~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-d~~~l~~~~-~~~~~i~~ 513 (514)
++.+.. ..+. ....+|.+.|++++|+| |+++|++++ ++.+++|.
T Consensus 295 ~iwd~~---~~~~-~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~ 340 (357)
T 4g56_B 295 AVLDAD---FSEV-FRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHH 340 (357)
T ss_dssp EEECTT---SCEE-EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EEEECC---CCcE-eEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEE
Confidence 994322 1111 12346899999999999 799999887 67789986
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-39 Score=305.89 Aligned_cols=314 Identities=14% Similarity=0.258 Sum_probs=229.4
Q ss_pred cccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCc------ccc
Q 010256 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPE------FDY 105 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~------~~~ 105 (514)
.+|.+.|+|++|+|||++||+|+ ++.++||++.+++.. ..+..|... +..
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~-----------------------~~l~~~~~~~~~~~~~~~ 116 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLV-----------------------ARLSDDSAANKDPENLNT 116 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEE-----------------------EEECC-------------
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEE-----------------------EEecCccccccccccccc
Confidence 46999999999999999999987 678999999877642 122222100 000
Q ss_pred ccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCc
Q 010256 106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (514)
Q Consensus 106 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 185 (514)
.........|.+++| ++++++|++++.|+.|++||+.+++.......+ ...|. .++|+|+++.
T Consensus 117 ~~~~~~~~~v~~v~~--s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h--------~~~v~-------~~~~~p~~~~ 179 (393)
T 1erj_A 117 SSSPSSDLYIRSVCF--SPDGKFLATGAEDRLIRIWDIENRKIVMILQGH--------EQDIY-------SLDYFPSGDK 179 (393)
T ss_dssp ----CCCCBEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEEEECCC--------SSCEE-------EEEECTTSSE
T ss_pred cccCCCceeEEEEEE--CCCCCEEEEEcCCCeEEEEECCCCcEEEEEccC--------CCCEE-------EEEEcCCCCE
Confidence 000011145999999 568889999999999999999999876665544 23455 8899999999
Q ss_pred cccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC-CCCEEEEe-cCCeEEEEeccC
Q 010256 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEI 263 (514)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~ 263 (514)
+ ++++.|+.|++|| +...+ +... ..+...+.+++|+| ++++|++| .|+.|++||+++
T Consensus 180 l------------~s~s~d~~v~iwd-~~~~~------~~~~--~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~ 238 (393)
T 1erj_A 180 L------------VSGSGDRTVRIWD-LRTGQ------CSLT--LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET 238 (393)
T ss_dssp E------------EEEETTSEEEEEE-TTTTE------EEEE--EECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTT
T ss_pred E------------EEecCCCcEEEEE-CCCCe------eEEE--EEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence 8 9999999999999 33221 1222 24567899999999 89999999 999999999986
Q ss_pred CCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccc
Q 010256 264 SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 343 (514)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (514)
+.....+ ........+|...|.+++|+|++ .+|++|+.|+.|++||+++...... ............+.+|...
T Consensus 239 ~~~~~~~-~~~~~~~~~h~~~v~~v~~~~~g-~~l~s~s~d~~v~~wd~~~~~~~~~----~~~~~~~~~~~~~~~h~~~ 312 (393)
T 1erj_A 239 GFLVERL-DSENESGTGHKDSVYSVVFTRDG-QSVVSGSLDRSVKLWNLQNANNKSD----SKTPNSGTCEVTYIGHKDF 312 (393)
T ss_dssp CCEEEEE-C------CCCSSCEEEEEECTTS-SEEEEEETTSEEEEEEC-------------------CEEEEEECCSSC
T ss_pred CcEEEee-cccccCCCCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEECCCCCCccc----ccCCCCCcceEEEecccCc
Confidence 6543222 11112335789999999999999 8999999999999999987543211 1111111112346678899
Q ss_pred eeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcC------CCCEEEEE
Q 010256 344 ISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG------DGGRVATG 416 (514)
Q Consensus 344 i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~s~ 416 (514)
|.+++|+|++++|++|+. +.|++||+.+ ++++..+.+|... |.+++|++ ++++|++|
T Consensus 313 v~~~~~~~~~~~l~sgs~D~~v~iwd~~~-~~~~~~l~~h~~~---------------v~~v~~~~~~~~~p~~~~l~sg 376 (393)
T 1erj_A 313 VLSVATTQNDEYILSGSKDRGVLFWDKKS-GNPLLMLQGHRNS---------------VISVAVANGSSLGPEYNVFATG 376 (393)
T ss_dssp EEEEEECGGGCEEEEEETTSEEEEEETTT-CCEEEEEECCSSC---------------EEEEEECSSCTTCTTCEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEECCC-CeEEEEECCCCCC---------------EEEEEecCCcCcCCCCCEEEEE
Confidence 999999999999999865 9999999997 8888889888765 34788775 78899999
Q ss_pred eCCCcEEEEecCC
Q 010256 417 SYSNLFRVFGCSE 429 (514)
Q Consensus 417 ~~dg~i~iwd~~~ 429 (514)
+.||.|+||++..
T Consensus 377 s~Dg~i~iW~~~~ 389 (393)
T 1erj_A 377 SGDCKARIWKYKK 389 (393)
T ss_dssp ETTSEEEEEEEEE
T ss_pred CCCCcEEECcccc
Confidence 9999999999864
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-39 Score=295.18 Aligned_cols=243 Identities=10% Similarity=0.089 Sum_probs=189.7
Q ss_pred ccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEE
Q 010256 230 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 308 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~ 308 (514)
..|...|.+++|+|++ .|++| .||+|++||+++++...... ..+.+|...|++++|+|++ ++|++|+.|+.|+
T Consensus 79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~----~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~ 152 (344)
T 4gqb_B 79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSK----FCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIK 152 (344)
T ss_dssp EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEE----EEEECCSSCEEEEEECTTS-SEEEEEETTSCEE
T ss_pred eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEee----ccccCCCCCEEEEEECCCC-CEEEEEeCCCeEE
Confidence 3456789999999996 55666 99999999999776543221 1345799999999999999 8999999999999
Q ss_pred EEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCC-EEEEEe-CCeEEEEEccCCCCceeeeeeccccc
Q 010256 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR-HILSRD-YMTLKLWDINMDSGPVATFQVHEHLR 386 (514)
Q Consensus 309 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~ 386 (514)
+||+++++.. . .+.+|...|.+++|+|++. +|++++ |++|++||+++ +++...+..+....
T Consensus 153 iwd~~~~~~~----~------------~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~~~~ 215 (344)
T 4gqb_B 153 VWDLAQQVVL----S------------SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC-PKPASQIGCSAPGY 215 (344)
T ss_dssp EEETTTTEEE----E------------EECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTS-SSCEEECC----CC
T ss_pred EEECCCCcEE----E------------EEcCcCCceEEEEecCCCCCceeeeccccccccccccc-cceeeeeecceeec
Confidence 9999988752 2 2556778999999999885 677775 59999999997 77777664433211
Q ss_pred cccccccccCCccceeeEEEcCC-CCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCC-CceeecCCCCe
Q 010256 387 PKLCDLYENDSIFDKFECCLSGD-GGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR-PSRPLGSLSGV 464 (514)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~s~d~~ 464 (514)
.+.+++|+|+ +++|++|+.||.|++||+.+++. ..++.+|...|++++|+|++ ++|++|+.|++
T Consensus 216 -------------~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~-~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~ 281 (344)
T 4gqb_B 216 -------------LPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC-VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCS 281 (344)
T ss_dssp -------------CEEEEEECSSCTTEEEEEETTSEEEEEESCC--C-CEEEECCSSCEEEEEECSSSSCCEEEEETTSC
T ss_pred -------------cceeeeecCCCCcceEEeccCCcEEEEECCCCcE-EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCe
Confidence 1448999985 57899999999999999998744 47899999999999999998 58999999999
Q ss_pred EEEeeCCCCCccccCCcccccccceEEEEEcCCCC-EEEEEe-cCcEEEEe
Q 010256 465 VRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN-SIACAA-SNSLYMYY 513 (514)
Q Consensus 465 v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~-~l~~~~-~~~~~i~~ 513 (514)
|++.+... .++ ....+|.+.|++++|+|+++ +|++++ ++.+++|.
T Consensus 282 i~vwd~~~---~~~-~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~ 328 (344)
T 4gqb_B 282 LAVLDSSL---SEL-FRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHV 328 (344)
T ss_dssp EEEECTTC---CEE-EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EEEEECCC---CcE-EEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence 99943221 111 12346999999999999986 466766 77888885
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-38 Score=295.41 Aligned_cols=292 Identities=13% Similarity=0.159 Sum_probs=232.1
Q ss_pred eeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceeccc
Q 010256 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (514)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (514)
...++.+|. ..|++++| ++++.+|++++.|++|++||..+++....
T Consensus 56 ~~~~l~gH~------------~~V~~~~~--s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~-------------------- 101 (354)
T 2pbi_B 56 TRRTLKGHG------------NKVLCMDW--CKDKRRIVSSSQDGKVIVWDSFTTNKEHA-------------------- 101 (354)
T ss_dssp EEEEEECCS------------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCEEEE--------------------
T ss_pred EEEEecCCC------------CeEEEEEE--CCCCCEEEEEeCCCeEEEEECCCCCcceE--------------------
Confidence 456788998 89999999 56788999999999999999877653221
Q ss_pred ccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe
Q 010256 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 251 (514)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 251 (514)
...|...|.+++|+|++..|+++
T Consensus 102 ---------------------------------------------------------~~~~~~~v~~~~~sp~g~~lasg 124 (354)
T 2pbi_B 102 ---------------------------------------------------------VTMPCTWVMACAYAPSGCAIACG 124 (354)
T ss_dssp ---------------------------------------------------------EECSSSCCCEEEECTTSSEEEEE
T ss_pred ---------------------------------------------------------EecCCCCEEEEEECCCCCEEEEe
Confidence 13345678899999999999999
Q ss_pred -cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCC
Q 010256 252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (514)
Q Consensus 252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 330 (514)
.|+.+++|++......... .....+..|...|.+++|+|++ ..|++++.|+.|++||+++++.. ..
T Consensus 125 ~~d~~i~v~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~~~~~----~~------ 191 (354)
T 2pbi_B 125 GLDNKCSVYPLTFDKNENMA--AKKKSVAMHTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQLL----QS------ 191 (354)
T ss_dssp STTSEEEEEECCCCTTCCSG--GGCEEEEECSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEE----EE------
T ss_pred eCCCCEEEEEEecccccccc--ccceeeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCeEE----EE------
Confidence 9999999998643211000 0112456789999999999998 89999999999999999987652 22
Q ss_pred CCccceeeccccceeEEEEec--CCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEc
Q 010256 331 PGTRSFFTEIIASISDIKFAR--NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 407 (514)
Q Consensus 331 ~~~~~~~~~~~~~i~~~~~s~--~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 407 (514)
+.+|...|.+++|+| ++.+|++|+ |+.|++||+++ ++++..+..|... |.+++|+
T Consensus 192 ------~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~-~~~~~~~~~h~~~---------------v~~v~~~ 249 (354)
T 2pbi_B 192 ------FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS-GQCVQAFETHESD---------------VNSVRYY 249 (354)
T ss_dssp ------EECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT-CCEEEEECCCSSC---------------EEEEEEC
T ss_pred ------EcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC-CcEEEEecCCCCC---------------eEEEEEe
Confidence 455668899999987 578999976 59999999997 8888888887754 4499999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCceeeeeecC--CCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCccccc
Q 010256 408 GDGGRVATGSYSNLFRVFGCSEGSAESTTLEA--SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDF 485 (514)
Q Consensus 408 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~ 485 (514)
|++++|++++.|+.|++||+..+... ..+.. +...+..+.|+|++++|++++.|+.|++++-... ........|
T Consensus 250 p~~~~l~s~s~D~~v~lwd~~~~~~~-~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~---~~~~~l~~h 325 (354)
T 2pbi_B 250 PSGDAFASGSDDATCRLYDLRADREV-AIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG---SRVSILFGH 325 (354)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEE-EEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---SEEEEECCC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEE-EEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC---ceEEEEECC
Confidence 99999999999999999999876433 34433 3457889999999999999999999999432211 122234468
Q ss_pred ccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 486 SMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 486 ~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
...|.+++|+||+++|++++ ++.+++|.
T Consensus 326 ~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 326 ENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99999999999999999998 55677874
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=335.13 Aligned_cols=424 Identities=12% Similarity=0.055 Sum_probs=264.1
Q ss_pred cccccchhhccccCcccccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceee
Q 010256 14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK 93 (514)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (514)
-+.|++... + ....+.|.+.|++++|+|++++|++|+.||.|++||+.+++.. .+. + +.....
T Consensus 81 v~lWd~~~~--~--~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~-----~~~-----i---~~~~~~ 143 (902)
T 2oaj_A 81 VYVLSLYSQ--K--VLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS-----SFK-----L---DNLQKS 143 (902)
T ss_dssp EEEEETTTC--S--EEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE-----EEE-----E---CCHHHH
T ss_pred EEEEECCCC--c--EEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc-----cce-----e---cccccc
Confidence 345776542 1 1123357789999999999999999999999999999866531 000 0 000000
Q ss_pred -eeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccc----------c
Q 010256 94 -TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKA----------A 162 (514)
Q Consensus 94 -~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~----------~ 162 (514)
..+.+|. ..|.+++|+|. ++..+++++.|+.| +||+++++.......+..+... .
T Consensus 144 ~~~~~~h~------------~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 209 (902)
T 2oaj_A 144 SFFPAARL------------SPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEK 209 (902)
T ss_dssp HTCSSSCC------------CCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSC
T ss_pred ccccccCC------------CCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccc
Confidence 1235666 88999999652 34689999999999 9999999877666544211000 0
Q ss_pred CCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccc--cc------cc---c
Q 010256 163 GNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRR--IY------AH---A 231 (514)
Q Consensus 163 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~--~~------~~---~ 231 (514)
....|. +++|+|+|+.+ ++++.|+.|++|| +...+......... .. .. .
T Consensus 210 h~~~V~-------~v~fspdg~~l------------asgs~Dg~i~lWd-~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~ 269 (902)
T 2oaj_A 210 RTPKVI-------QSLYHPNSLHI------------ITIHEDNSLVFWD-ANSGHMIMARTVFETEINVPQPDYIRDSST 269 (902)
T ss_dssp BCCCEE-------EEEECTTSSEE------------EEEETTCCEEEEE-TTTCCEEEEECSSCSCTTSCCTTCCCCCSS
T ss_pred cCCCeE-------EEEEcCCCCEE------------EEEECCCeEEEEE-CCCCcEEEEEeecccccCCCCCcCCCCCcc
Confidence 113344 89999999998 9999999999999 43322110000000 00 00 1
Q ss_pred CccCeEEEEEC----CCC-CEEEEe-cC-----CeEEEEe----------------------------------------
Q 010256 232 HDYHINSISNN----SDG-ETFISA-DD-----LRINLWN---------------------------------------- 260 (514)
Q Consensus 232 h~~~v~~~~~~----~~~-~~l~s~-~d-----~~i~iwd---------------------------------------- 260 (514)
|...|.+++|+ |++ .+|++| .+ ..+.+|+
T Consensus 270 ~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 349 (902)
T 2oaj_A 270 NAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNIL 349 (902)
T ss_dssp CCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEE
T ss_pred ccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEE
Confidence 34457777773 332 344444 32 2455554
Q ss_pred -------------------------------ccCCCceeeee---------------------------------ccCCC
Q 010256 261 -------------------------------LEISNQSFNIV---------------------------------DVKPA 276 (514)
Q Consensus 261 -------------------------------~~~~~~~~~~~---------------------------------~~~~~ 276 (514)
+.++....... .....
T Consensus 350 ~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~ 429 (902)
T 2oaj_A 350 PIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDY 429 (902)
T ss_dssp ECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCC
T ss_pred ECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCC
Confidence 32211100000 00001
Q ss_pred cccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEE
Q 010256 277 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI 356 (514)
Q Consensus 277 ~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 356 (514)
.+.+|...+.+++|+|++ ++|++|+.|++|++||+.++.... ...+...- .+..-.+|...|.+++|+|+|++|
T Consensus 430 ~l~G~~~~v~sv~~spdg-~~laSgs~DgtVrlWd~~~g~~~~--~~~~~~~l---~~~~~~~h~~~V~svafspdg~~L 503 (902)
T 2oaj_A 430 LLKGGVRTKRQKLPAEYG-TAFITGHSNGSVRIYDASHGDIQD--NASFEVNL---SRTLNKAKELAVDKISFAAETLEL 503 (902)
T ss_dssp SCCCSBCCCCCCCCCSEE-EEEEEEETTSEEEEEESSCCTTTT--TBCEEEEH---HHHTTCSSSCCEEEEEEETTTTEE
T ss_pred cccCCcCCCCcccccccC-cEEEEecCCCcEEEEECCCccccC--CceEEeec---hhhcCCCCCCceeEEEecCCCCeE
Confidence 122333344445567888 899999999999999998874311 11111000 000012677899999999999999
Q ss_pred EEEeC-CeEEEEEccCCCCc---------------------------------------------eeeeeeccccccccc
Q 010256 357 LSRDY-MTLKLWDINMDSGP---------------------------------------------VATFQVHEHLRPKLC 390 (514)
Q Consensus 357 ~~~~~-~~i~iwd~~~~~~~---------------------------------------------~~~~~~~~~~~~~~~ 390 (514)
|+|+. ++|+|||+.. ++. +..+.+|..
T Consensus 504 Asgs~DgtV~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~------ 576 (902)
T 2oaj_A 504 AVSIETGDVVLFKYEV-NQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKG------ 576 (902)
T ss_dssp EEEETTSCEEEEEEEE-CCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSC------
T ss_pred EEEecCcEEEEEEecC-ccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCC------
Confidence 99865 9999999986 321 222333332
Q ss_pred cccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceee----eeec-CCCcceeEEEEC-----CCC---Ccee
Q 010256 391 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES----TTLE-ASKNPMRRQVQT-----PSR---PSRP 457 (514)
Q Consensus 391 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~-~~~~~v~~~~~~-----~~~---~~l~ 457 (514)
.|++++|+||| +||+|+.|+.|+|||+++..... ..+. +|...|++++|+ ||+ ++|+
T Consensus 577 ---------~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~ 646 (902)
T 2oaj_A 577 ---------KTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMV 646 (902)
T ss_dssp ---------SEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEE
T ss_pred ---------cEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEE
Confidence 35699999999 99999999999999998653321 1333 899999999999 885 8999
Q ss_pred ecCCCCeEEEeeC-----CCCCccccCCc-ccccccceEEEE-Ec----------------------CCCCEEEEEecCc
Q 010256 458 LGSLSGVVRRVKG-----ADNSALDANGN-AFDFSMKLLHLA-WH----------------------PSENSIACAASNS 508 (514)
Q Consensus 458 s~s~d~~v~i~~~-----~~~~~~~~~~~-~~~~~~~v~~~~-~s----------------------pd~~~l~~~~~~~ 508 (514)
+|+.|++|++++- .+.. ..+.+. ...+.+.|..++ |+ +++.+|++ +++.
T Consensus 647 sgs~D~tv~~wd~~p~~~g~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~-~~~~ 724 (902)
T 2oaj_A 647 CGTDMGEVITYKILPASGGKFD-VQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLIT-GFDD 724 (902)
T ss_dssp EEETTSEEEEEEEEECGGGCEE-EEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEE-CSSE
T ss_pred EEecCCcEEEEEEecCCCCcEE-EEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEE-eccc
Confidence 9999999999321 1111 011110 112356777777 66 55555554 4888
Q ss_pred EEEEe
Q 010256 509 LYMYY 513 (514)
Q Consensus 509 ~~i~~ 513 (514)
++||.
T Consensus 725 ir~~~ 729 (902)
T 2oaj_A 725 IRLIT 729 (902)
T ss_dssp EEEEC
T ss_pred eEEEe
Confidence 99996
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=285.62 Aligned_cols=294 Identities=20% Similarity=0.328 Sum_probs=235.6
Q ss_pred CCccceeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCc
Q 010256 86 RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNG 165 (514)
Q Consensus 86 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
..|.+.....+.+|. ..|++++| ++++++|++++.|+.|++|++.+++....
T Consensus 9 ~~~~~~~~~~~~gh~------------~~v~~~~~--s~~~~~l~s~~~dg~i~iw~~~~~~~~~~-------------- 60 (312)
T 4ery_A 9 VKPNYALKFTLAGHT------------KAVSSVKF--SPNGEWLASSSADKLIKIWGAYDGKFEKT-------------- 60 (312)
T ss_dssp CCCCCEEEEEECCCS------------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCCEEEE--------------
T ss_pred CCCCceeEEEEcccC------------CcEEEEEE--CCCCCEEEEeeCCCeEEEEeCCCcccchh--------------
Confidence 446677778899998 88999999 56788999999999999999877653221
Q ss_pred ceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCC
Q 010256 166 PIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG 245 (514)
Q Consensus 166 ~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 245 (514)
+.+|...|.+++|+|++
T Consensus 61 ---------------------------------------------------------------~~~h~~~v~~~~~~~~~ 77 (312)
T 4ery_A 61 ---------------------------------------------------------------ISGHKLGISDVAWSSDS 77 (312)
T ss_dssp ---------------------------------------------------------------ECCCSSCEEEEEECTTS
T ss_pred ---------------------------------------------------------------hccCCCceEEEEEcCCC
Confidence 25677889999999999
Q ss_pred CEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccc
Q 010256 246 ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL 324 (514)
Q Consensus 246 ~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 324 (514)
++|+++ .|+.|++||+++.+... .+.+|...|.+++|+|++ ++|++|+.|+.|++||+++++.. ..
T Consensus 78 ~~l~s~~~d~~i~vwd~~~~~~~~--------~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~----~~ 144 (312)
T 4ery_A 78 NLLVSASDDKTLKIWDVSSGKCLK--------TLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCL----KT 144 (312)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEE--------EEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEE----EE
T ss_pred CEEEEECCCCEEEEEECCCCcEEE--------EEcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCEEE----EE
Confidence 999999 99999999998665443 456789999999999998 89999999999999999887642 22
Q ss_pred eeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceee
Q 010256 325 FEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFE 403 (514)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 403 (514)
+..|..+|.+++|+|++++|++++. +.|++||+++ ++.+..+..+... .+..
T Consensus 145 ------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~--------------~~~~ 197 (312)
T 4ery_A 145 ------------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNP--------------PVSF 197 (312)
T ss_dssp ------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEEECCSSCC--------------CEEE
T ss_pred ------------ecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeeEEeccCCC--------------ceEE
Confidence 3456678999999999999999865 9999999987 6666555332211 1347
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCccee---EEEECCCCCceeecCCCCeEEEeeCCCCCccccCC
Q 010256 404 CCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMR---RQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANG 480 (514)
Q Consensus 404 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~---~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~ 480 (514)
++|+|++++|++++.||.|++||+.+++ ....+.+|..... .....+++++|++|+.|+.|++.+- ...+...
T Consensus 198 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~---~~~~~~~ 273 (312)
T 4ery_A 198 VKFSPNGKYILAATLDNTLKLWDYSKGK-CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL---QTKEIVQ 273 (312)
T ss_dssp EEECTTSSEEEEEETTTEEEEEETTTTE-EEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEET---TTCCEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCc-EEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEEC---CCchhhh
Confidence 9999999999999999999999999874 4467777765533 3334578899999999999999432 2222333
Q ss_pred cccccccceEEEEEcCCCCEEEEEe---cCcEEEEeC
Q 010256 481 NAFDFSMKLLHLAWHPSENSIACAA---SNSLYMYYA 514 (514)
Q Consensus 481 ~~~~~~~~v~~~~~spd~~~l~~~~---~~~~~i~~~ 514 (514)
....|...|.+++|+|++++|++++ ++.+.+|..
T Consensus 274 ~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 274 KLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred hhhccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 4446899999999999999999886 678999963
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=295.78 Aligned_cols=325 Identities=12% Similarity=0.131 Sum_probs=252.9
Q ss_pred ccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccc
Q 010256 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (514)
.|.+.|.+++|+|||++++++..++.+.+|...... ......+|.
T Consensus 7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~h~------------ 51 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHA-----------------------RQINTLNHG------------ 51 (337)
T ss_dssp EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEE-----------------------EEEEEECCS------------
T ss_pred ccCCceeEEEECCCCCEEEeecCCCcEeccccCCcc-----------------------ccceeccCC------------
Confidence 467889999999999999998877766665432211 122334676
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
..|.+++| +++++++++++ ||.|++||+.+++....
T Consensus 52 ~~v~~~~~--~~~~~~l~~~~-dg~i~iw~~~~~~~~~~----------------------------------------- 87 (337)
T 1gxr_A 52 EVVCAVTI--SNPTRHVYTGG-KGCVKVWDISHPGNKSP----------------------------------------- 87 (337)
T ss_dssp SCCCEEEE--CSSSSEEEEEC-BSEEEEEETTSTTCCSC-----------------------------------------
T ss_pred CceEEEEE--ecCCcEEEEcC-CCeEEEEECCCCCceee-----------------------------------------
Confidence 88999999 56778999988 99999999986531000
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
+.. ....+|...|.+++|+|++++|+++ .|+.|++||+++.+.....
T Consensus 88 --------------~~~-----------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~- 135 (337)
T 1gxr_A 88 --------------VSQ-----------------LDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA- 135 (337)
T ss_dssp --------------SEE-----------------EECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEE-
T ss_pred --------------eec-----------------ccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceee-
Confidence 000 0013677899999999999999999 8999999999866532221
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
.+..|...+.+++|+|++ +++++++.||.|++||+++++.. .. +..|...|.+++|+|
T Consensus 136 -----~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~~~d~~~~~~~----~~------------~~~~~~~i~~~~~~~ 193 (337)
T 1gxr_A 136 -----ELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLV----RQ------------FQGHTDGASCIDISN 193 (337)
T ss_dssp -----EEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEE----EE------------ECCCSSCEEEEEECT
T ss_pred -----ecccCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCcee----ee------------eecccCceEEEEECC
Confidence 456688899999999998 89999999999999999987652 22 344667899999999
Q ss_pred CCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 352 NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 352 ~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
++++|++++. +.|++||++. ++.+..+.. ... +.+++|+|++++|++++.|+.|++||+.++
T Consensus 194 ~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~-~~~---------------v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~ 256 (337)
T 1gxr_A 194 DGTKLWTGGLDNTVRSWDLRE-GRQLQQHDF-TSQ---------------IFSLGYCPTGEWLAVGMESSNVEVLHVNKP 256 (337)
T ss_dssp TSSEEEEEETTSEEEEEETTT-TEEEEEEEC-SSC---------------EEEEEECTTSSEEEEEETTSCEEEEETTSS
T ss_pred CCCEEEEEecCCcEEEEECCC-CceEeeecC-CCc---------------eEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence 9999999764 9999999987 666555532 211 348999999999999999999999999876
Q ss_pred ceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEe-cCcE
Q 010256 431 SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSL 509 (514)
Q Consensus 431 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~ 509 (514)
.. ..+..|..++..+.|+|++++|++++.|+.+++++-.... .. ....+...|.+++|+|++++|++++ ++.+
T Consensus 257 ~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~---~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 330 (337)
T 1gxr_A 257 DK--YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA---SI-FQSKESSSVLSCDISVDDKYIVTGSGDKKA 330 (337)
T ss_dssp CE--EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC---EE-EEEECSSCEEEEEECTTSCEEEEEETTSCE
T ss_pred Ce--EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCe---EE-EEecCCCcEEEEEECCCCCEEEEecCCCeE
Confidence 43 5778999999999999999999999999999994332211 11 2235788999999999999999887 5568
Q ss_pred EEEe
Q 010256 510 YMYY 513 (514)
Q Consensus 510 ~i~~ 513 (514)
.+|.
T Consensus 331 ~iw~ 334 (337)
T 1gxr_A 331 TVYE 334 (337)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8885
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=304.88 Aligned_cols=333 Identities=12% Similarity=0.180 Sum_probs=250.2
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccce
Q 010256 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (514)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (514)
+.+++++|+|+|++|++|+.||.|++||+.+++.. ..+..|. .+
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~-----------------------~~~~~~~-------------~~ 100 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGS-----------------------KMLKRAD-------------YT 100 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETT-----------------------TTSCSCC-------------EE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEeccccee-----------------------eEEecCC-------------ce
Confidence 44668999999999999999999999998766532 1222332 23
Q ss_pred eEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCC
Q 010256 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (514)
Q Consensus 116 ~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (514)
....| ++++.+|++++.|+.|++||+.+++....
T Consensus 101 ~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------------------------------------------- 134 (420)
T 3vl1_A 101 AVDTA--KLQMRRFILGTTEGDIKVLDSNFNLQREI-------------------------------------------- 134 (420)
T ss_dssp EEEEE--CSSSCEEEEEETTSCEEEECTTSCEEEEE--------------------------------------------
T ss_pred EEEEE--ecCCCEEEEEECCCCEEEEeCCCcceeee--------------------------------------------
Confidence 33355 56778999999999999999987653211
Q ss_pred CcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccC
Q 010256 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 274 (514)
Q Consensus 196 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~ 274 (514)
+.+|...|.+++|+|++++|+++ .|++|++||+++.+...
T Consensus 135 ---------------------------------~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~------ 175 (420)
T 3vl1_A 135 ---------------------------------DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPR------ 175 (420)
T ss_dssp ---------------------------------TTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCE------
T ss_pred ---------------------------------cccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCce------
Confidence 25788899999999999999999 99999999998765443
Q ss_pred CCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCc------------cceeecccc
Q 010256 275 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT------------RSFFTEIIA 342 (514)
Q Consensus 275 ~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~ 342 (514)
.+.+|...|.+++|+|++ .+|++++.|+.|++||+++++.. ..+..+..... ......+..
T Consensus 176 --~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 248 (420)
T 3vl1_A 176 --TLIGHRATVTDIAIIDRG-RNVLSASLDGTIRLWECGTGTTI----HTFNRKENPHDGVNSIALFVGTDRQLHEISTS 248 (420)
T ss_dssp --EEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEEE----EEECBTTBTTCCEEEEEEEECCCSSCGGGCCC
T ss_pred --EEcCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEeECCCCcee----EEeecCCCCCCCccEEEEecCCcceeeecccC
Confidence 456799999999999998 89999999999999999988753 33332211000 001122345
Q ss_pred ceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeee-ccccccccccccccCCccceeeEEEcCCCC-EEEEEeCC
Q 010256 343 SISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQV-HEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYS 419 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d 419 (514)
.+.+++|+|++++|++++. +.|++||+++ ++.+..+.. |... +.+++|+|+++ +|++|+.|
T Consensus 249 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~---------------v~~~~~~~~~~~~l~~g~~d 312 (420)
T 3vl1_A 249 KKNNLEFGTYGKYVIAGHVSGVITVHNVFS-KEQTIQLPSKFTCS---------------CNSLTVDGNNANYIYAGYEN 312 (420)
T ss_dssp CCCTTCSSCTTEEEEEEETTSCEEEEETTT-CCEEEEECCTTSSC---------------EEEEEECSSCTTEEEEEETT
T ss_pred cccceEEcCCCCEEEEEcCCCeEEEEECCC-CceeEEcccccCCC---------------ceeEEEeCCCCCEEEEEeCC
Confidence 6777788999999999865 9999999997 665555533 3322 45999999999 99999999
Q ss_pred CcEEEEecCCCceeeeeecC-CCcceeEEEECCCCCceeecCCCCeEEEeeCCC---CCcc---ccCCcccccccceEEE
Q 010256 420 NLFRVFGCSEGSAESTTLEA-SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGAD---NSAL---DANGNAFDFSMKLLHL 492 (514)
Q Consensus 420 g~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~---~~~~---~~~~~~~~~~~~v~~~ 492 (514)
|.|++||+.+++.....+.. |..++..+.+ +++++|++++.|+.|++++-.. +... ........+...|.++
T Consensus 313 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 391 (420)
T 3vl1_A 313 GMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQF 391 (420)
T ss_dssp SEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEE
T ss_pred CeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEE
Confidence 99999999987665566666 6677777754 5788999999999999933222 1100 0111233578899999
Q ss_pred EEcCCCC----EEEEEecCcEEEEe
Q 010256 493 AWHPSEN----SIACAASNSLYMYY 513 (514)
Q Consensus 493 ~~spd~~----~l~~~~~~~~~i~~ 513 (514)
+|+|+++ +++++..+.+.+|+
T Consensus 392 ~~s~~~~~~g~l~a~g~~g~~~~~~ 416 (420)
T 3vl1_A 392 CYVSDDESNGEVLEVGKNNFCALYN 416 (420)
T ss_dssp EEECCSSSSCEEEEEETTTEEEEEE
T ss_pred EEccCCCCcceEEEEcCCceEEEEe
Confidence 9999999 67777788888886
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=304.73 Aligned_cols=294 Identities=12% Similarity=0.131 Sum_probs=224.9
Q ss_pred cccccceEEEEEcC-CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 32 VQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 32 ~~h~~~V~~~~~s~-~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
.+|.+.|+||+|+| ++++||+|+.||.|+|||+.+++.. ....+.+|.
T Consensus 116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~---------------------~~~~~~gH~---------- 164 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP---------------------TFIKGIGAG---------- 164 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC---------------------EEECCCSSS----------
T ss_pred CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce---------------------eEEEccCCC----------
Confidence 46888999999999 5679999999999999998766532 334567887
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
+.|++|+|+| .++.+|++++.||+|++||++++........
T Consensus 165 --~~V~~l~f~p-~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~------------------------------------ 205 (435)
T 4e54_B 165 --GSITGLKFNP-LNTNQFYASSMEGTTRLQDFKGNILRVFASS------------------------------------ 205 (435)
T ss_dssp --CCCCEEEECS-SCTTEEEEECSSSCEEEEETTSCEEEEEECC------------------------------------
T ss_pred --CCEEEEEEeC-CCCCEEEEEeCCCEEEEeeccCCceeEEecc------------------------------------
Confidence 8899999965 3567999999999999999987653322111
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
..+...+.+++|+|++++|++| .||.|++||++. +..
T Consensus 206 ---------------------------------------~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~-- 243 (435)
T 4e54_B 206 ---------------------------------------DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KEL-- 243 (435)
T ss_dssp ---------------------------------------SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBC--
T ss_pred ---------------------------------------CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-cee--
Confidence 1233456789999999999999 999999999973 322
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
..+.+|...|.+++|+|++..+|++|+.|+.|++||+++.+.... + ....+|...|++++|
T Consensus 244 ------~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~----~---------~~~~~h~~~v~~~~~ 304 (435)
T 4e54_B 244 ------WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKAS----F---------LYSLPHRHPVNAACF 304 (435)
T ss_dssp ------CCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSC----C---------SBCCBCSSCEEECCB
T ss_pred ------EEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccce----E---------EEeeeccccccceeE
Confidence 256789999999999999867899999999999999988654211 1 113457789999999
Q ss_pred ecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe-----------
Q 010256 350 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS----------- 417 (514)
Q Consensus 350 s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~----------- 417 (514)
+|+|++|++++ |+.|+|||+.. +.....+..|........ ......|+|++.++++++
T Consensus 305 spdg~~l~s~~~D~~i~iwd~~~-~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 374 (435)
T 4e54_B 305 SPDGARLLTTDQKSEIRVYSASQ-WDCPLGLIPHPHRHFQHL---------TPIKAAWHPRYNLIVVGRYPDPNFKSCTP 374 (435)
T ss_dssp CTTSSEEEEEESSSCEEEEESSS-SSSEEEECCCCCCCCSSS---------CCCBCEECSSSSCEEEECCCCTTSCCSST
T ss_pred CCCCCeeEEEcCCCEEEEEECCC-CccceEEecccccccccc---------eeEEEEEcCCCCEEEEEEcCCCCeEEEEe
Confidence 99999999976 59999999997 777776666543211000 011455666666555543
Q ss_pred -CCCcEEEEecCCCceeeeeecCCCcceeEE-EECCCCCceeecCCCCeEEE
Q 010256 418 -YSNLFRVFGCSEGSAESTTLEASKNPMRRQ-VQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 418 -~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~s~s~d~~v~i 467 (514)
.++.|++||..+++.......+|...|.++ +|+|++++|++|+ |+.|++
T Consensus 375 ~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~i 425 (435)
T 4e54_B 375 YELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILI 425 (435)
T ss_dssp TCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEE
T ss_pred cCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEE
Confidence 346799999999866545556888889887 6999999999987 788999
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-38 Score=286.77 Aligned_cols=294 Identities=17% Similarity=0.215 Sum_probs=226.7
Q ss_pred ceeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceec
Q 010256 90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG 169 (514)
Q Consensus 90 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 169 (514)
..+..++.+|. +.|++++|+|. ++.+|++++.|++|++|++.......
T Consensus 7 ~~l~~~l~gH~------------~~V~~l~~~~~-~~~~l~s~s~D~~v~~W~~~~~~~~~------------------- 54 (319)
T 3frx_A 7 LVLRGTLEGHN------------GWVTSLATSAG-QPNLLLSASRDKTLISWKLTGDDQKF------------------- 54 (319)
T ss_dssp EEEEEEECCCS------------SCEEEEEECSS-CTTEEEEEETTSEEEEEEEEEETTEE-------------------
T ss_pred EEEEEEEcccc------------ceEEEEEccCC-CccEEEEecCCccEEEecCCCCCccc-------------------
Confidence 44667889998 89999999642 34699999999999999986431000
Q ss_pred ccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEE
Q 010256 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 249 (514)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 249 (514)
..+... +.+|...|.+++|+|++++|+
T Consensus 55 ----------------------------------------------------~~~~~~-~~~h~~~v~~~~~s~dg~~l~ 81 (319)
T 3frx_A 55 ----------------------------------------------------GVPVRS-FKGHSHIVQDCTLTADGAYAL 81 (319)
T ss_dssp ----------------------------------------------------EEEEEE-EECCSSCEEEEEECTTSSEEE
T ss_pred ----------------------------------------------------cccceE-EeCCcccEEEEEECCCCCEEE
Confidence 001111 368999999999999999999
Q ss_pred Ee-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceecc
Q 010256 250 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 328 (514)
Q Consensus 250 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 328 (514)
+| .|++|++||+++++... .+.+|...|.+++|+|++ .+|++|+.|+.|++||++.... .
T Consensus 82 s~s~D~~v~~wd~~~~~~~~--------~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~~~~~-----~----- 142 (319)
T 3frx_A 82 SASWDKTLRLWDVATGETYQ--------RFVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIKGQCL-----A----- 142 (319)
T ss_dssp EEETTSEEEEEETTTTEEEE--------EEECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETTSCEE-----E-----
T ss_pred EEeCCCEEEEEECCCCCeeE--------EEccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeE-----E-----
Confidence 99 99999999998765443 467899999999999998 8999999999999999975321 1
Q ss_pred CCCCccceeeccccceeEEEEecC------CCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccce
Q 010256 329 EAPGTRSFFTEIIASISDIKFARN------GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 401 (514)
Q Consensus 329 ~~~~~~~~~~~~~~~i~~~~~s~~------g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 401 (514)
.+.+|...|.++.|+|. +..+++++ |+.|++||++. .+....+.+|... |
T Consensus 143 -------~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~h~~~---------------v 199 (319)
T 3frx_A 143 -------TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ-FQIEADFIGHNSN---------------I 199 (319)
T ss_dssp -------EECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT-TEEEEEECCCCSC---------------E
T ss_pred -------EEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc-chhheeecCCCCc---------------E
Confidence 24556688999999985 44788875 59999999987 7777777777654 4
Q ss_pred eeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEe--eCCCCCc---c
Q 010256 402 FECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRV--KGADNSA---L 476 (514)
Q Consensus 402 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~--~~~~~~~---~ 476 (514)
.+++|+|+|++|++++.||.|++||+.+++. ...+.. ..++.+++|+|++.+|++++.++ +++. +...... .
T Consensus 200 ~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~-~~~~~~-~~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~~~~~~~~~~ 276 (319)
T 3frx_A 200 NTLTASPDGTLIASAGKDGEIMLWNLAAKKA-MYTLSA-QDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRP 276 (319)
T ss_dssp EEEEECTTSSEEEEEETTCEEEEEETTTTEE-EEEEEC-CSCEEEEEECSSSSEEEEEETTE-EEEEEETTEEEEEEECC
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-EEEecC-CCcEEEEEEcCCCCEEEEEcCCC-cEEEEeCcCeeeeccCc
Confidence 4999999999999999999999999998744 355554 46899999999999999887654 6662 1111110 0
Q ss_pred ccCCcccccccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 477 DANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 477 ~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
........+...+.+++|+|||++|++++ ++.+++|+
T Consensus 277 ~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 277 EFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314 (319)
T ss_dssp CCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cccccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence 11111223567899999999999999888 55688886
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-39 Score=310.46 Aligned_cols=338 Identities=9% Similarity=0.033 Sum_probs=232.1
Q ss_pred cccccceEEEEEcCCC---------CeEEE-------------------ecCCCeEEEEEecCCcccCCccccccccccc
Q 010256 32 VQEVDIISAIEFDKSG---------DHLAT-------------------GDRGGRVVLFERTDTRDNGGQRRDLEMMDYS 83 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g---------~~l~t-------------------g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 83 (514)
..+.+.|.+|+|+|++ ++||+ ++.|++|+||++.+++..
T Consensus 130 ~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~------------- 196 (524)
T 2j04_B 130 YNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLH------------- 196 (524)
T ss_dssp EECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCC-------------
T ss_pred EECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCC-------------
Confidence 3457788899998876 56666 457889999999776531
Q ss_pred ccCCccceeeeeeccCCCccccccccccccceeEEEEeeC----CCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCc
Q 010256 84 MSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQS----ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPE 159 (514)
Q Consensus 84 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~----~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~ 159 (514)
......+.+|. +.|.+++|+|. +++.+|++++.||+|++||+.+++........
T Consensus 197 ------~~~~~~l~~~~------------~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~---- 254 (524)
T 2j04_B 197 ------CVKVQTIVHSF------------GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM---- 254 (524)
T ss_dssp ------EEEEEEEEECC------------CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC----
T ss_pred ------ceEEEEEEecC------------CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee----
Confidence 01123355665 77999999875 34679999999999999999765310000000
Q ss_pred cccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEE
Q 010256 160 KAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSI 239 (514)
Q Consensus 160 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 239 (514)
+ ..+... +.+|...|.++
T Consensus 255 -----------------------------------------------------~--------~~p~~~-l~~h~~~v~sv 272 (524)
T 2j04_B 255 -----------------------------------------------------C--------EKPSLT-LSLADSLITTF 272 (524)
T ss_dssp -----------------------------------------------------C--------CSCSEE-ECCTTTCEEEE
T ss_pred -----------------------------------------------------e--------cCceEE-EEcCCCCEEEE
Confidence 0 000111 36788999999
Q ss_pred EECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEE--EEecCCCcEEEEEecCCeEEEEEcCCCc
Q 010256 240 SNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSA--EFHPTHCNMLAYSSSKGSIRLIDMRQSA 316 (514)
Q Consensus 240 ~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v--~~~p~~~~~l~~~~~dg~i~~wd~~~~~ 316 (514)
+|++++ .|++| .||+|++||++++..... .+.+|...|+++ .|+|++.++|++|+.|++|+|||+++++
T Consensus 273 ~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~-------~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~ 344 (524)
T 2j04_B 273 DFLSPT-TVVCGFKNGFVAEFDLTDPEVPSF-------YDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIA 344 (524)
T ss_dssp EESSSS-EEEEEETTSEEEEEETTBCSSCSE-------EEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHH
T ss_pred EecCCC-eEEEEeCCCEEEEEECCCCCCceE-------EeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCC
Confidence 999865 78888 999999999986543321 357799999999 4677643699999999999999999876
Q ss_pred cccccccceeccCCCCccceeeccc--cceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeecccccccccccc
Q 010256 317 LCDTHSKLFEEQEAPGTRSFFTEII--ASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLY 393 (514)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (514)
.. ..+. +|. ..|.+++|+|+++.++++++ ++|++||++. +..+.++.+|...
T Consensus 345 ~~----~~~~------------~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~-~~~~~~l~gH~~~-------- 399 (524)
T 2j04_B 345 TT----KTTV------------SRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRA-AFAVHPLVSRETT-------- 399 (524)
T ss_dssp HH----CEEE------------EECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTC-TTCCEEEEECSSC--------
T ss_pred cc----cccc------------cccccCcccceEeCCCcCeEEEeCCCCcEEEEECcc-cccceeeecCCCc--------
Confidence 52 2222 232 24789999999999998765 8999999997 7777888888765
Q ss_pred ccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecC-----CCcceeEEEECCCCCceeecCCCCeEEEe
Q 010256 394 ENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA-----SKNPMRRQVQTPSRPSRPLGSLSGVVRRV 468 (514)
Q Consensus 394 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~s~s~d~~v~i~ 468 (514)
|++++|+|+|++|++|+.||.|++||+... ....+.. +...++.++|+|+++.+.. ..+..+...
T Consensus 400 -------V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~--~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~-~~~~~~~~~ 469 (524)
T 2j04_B 400 -------ITAIGVSRLHPMVLAGSADGSLIITNAARR--LLHGIKNSSATQKSLRLWKWDYSIKDDKYRI-DSSYEVYPL 469 (524)
T ss_dssp -------EEEEECCSSCCBCEEEETTTEEECCBSCSS--TTTCC------CCCCEEEECBCCSSSCEEEE-CCCCCCCC-
T ss_pred -------eEEEEeCCCCCeEEEEECCCEEEEEechHh--hccccccCccceeeeEEEEeccCCCCCeEEc-cCCceeccc
Confidence 459999999999999999999999998643 2222111 1225778999999885532 111111110
Q ss_pred eCCCCCccccCCcccccccceEEEEEcCCCC---EEEEEec-CcEEEEe
Q 010256 469 KGADNSALDANGNAFDFSMKLLHLAWHPSEN---SIACAAS-NSLYMYY 513 (514)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~---~l~~~~~-~~~~i~~ 513 (514)
. .. ........+|...|.+++|+|+++ +||+|+. +.++||.
T Consensus 470 ~---~~-g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~ 514 (524)
T 2j04_B 470 T---VN-DVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEY 514 (524)
T ss_dssp ----------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred c---cC-CcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence 0 00 012223446899999999999965 8999986 6688885
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-39 Score=310.33 Aligned_cols=339 Identities=10% Similarity=0.136 Sum_probs=253.4
Q ss_pred cceeEEEEeeCCCCc-EEEEe----------eCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeecc
Q 010256 113 EKINKIRWCQSANSA-LYLLS----------TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA 181 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~-~l~s~----------~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 181 (514)
..|.+++|+ ++++ +++++ +.|+.|++||+.+++........ .....+. .++|+|
T Consensus 13 ~~v~~~~~s--p~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~------~~~~~v~-------~~~~s~ 77 (416)
T 2pm9_A 13 SRTATFAWS--HDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL------QVDSKFN-------DLDWSH 77 (416)
T ss_dssp EESCBCCBC--SSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC------CCSSCEE-------EEEECS
T ss_pred hhcceEeeC--CCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE------ecCCceE-------EEEECC
Confidence 568889994 5655 88898 88999999999877522111000 0123444 889999
Q ss_pred CCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC-CCEEEEe-cCCeEEEE
Q 010256 182 NGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLW 259 (514)
Q Consensus 182 ~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~iw 259 (514)
+++.+ ++++.++.|++|+ +...... ...... +.+|...|.+++|+|+ +++|+++ .|+.|++|
T Consensus 78 ~~~~l------------~~~~~dg~v~vw~-~~~~~~~--~~~~~~-~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw 141 (416)
T 2pm9_A 78 NNKII------------AGALDNGSLELYS-TNEANNA--INSMAR-FSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIW 141 (416)
T ss_dssp SSSCE------------EEEESSSCEEEEC-CSSTTSC--CCEEEE-CCCSSSCCCEEEECSSSTTBEEEECSSSCEEBC
T ss_pred CCCeE------------EEEccCCeEEEee-ccccccc--ccchhh-ccCCccceEEEEEcCCCCCEEEEEcCCCeEEEE
Confidence 99998 9999999999999 3331110 112222 3789999999999998 8999999 89999999
Q ss_pred eccCCC------ceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCc
Q 010256 260 NLEISN------QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT 333 (514)
Q Consensus 260 d~~~~~------~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 333 (514)
|+++.+ .... ...+..|...|.+++|+|++..+|++++.|+.|++||+++++.. ..+..+..
T Consensus 142 d~~~~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~----~~~~~~~~--- 209 (416)
T 2pm9_A 142 DMNKCTESPSNYTPLT-----PGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEV----IHLSYTSP--- 209 (416)
T ss_dssp BTTTTSSCTTTCCCBC-----CCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEE----EEECCCCC---
T ss_pred ECCCCccccccccccc-----cccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcc----eEEecccc---
Confidence 998765 2211 12346788999999999995489999999999999999987653 23332210
Q ss_pred cceeeccccceeEEEEecCC-CEEEEEeC-C---eEEEEEccCCCCceeeee-eccccccccccccccCCccceeeEEEc
Q 010256 334 RSFFTEIIASISDIKFARNG-RHILSRDY-M---TLKLWDINMDSGPVATFQ-VHEHLRPKLCDLYENDSIFDKFECCLS 407 (514)
Q Consensus 334 ~~~~~~~~~~i~~~~~s~~g-~~l~~~~~-~---~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s 407 (514)
..+|...|.+++|+|++ .+++++++ + .|++||++....++..+. .|... |.+++|+
T Consensus 210 ---~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~---------------v~~~~~s 271 (416)
T 2pm9_A 210 ---NSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKG---------------ILSLDWC 271 (416)
T ss_dssp ---SSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSC---------------EEEEEEC
T ss_pred ---ccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCc---------------eeEEEeC
Confidence 12345789999999997 57887765 6 999999997446667766 66544 4499999
Q ss_pred C-CCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCC-CceeecCCCCeEEEeeCCCCCccccC------
Q 010256 408 G-DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR-PSRPLGSLSGVVRRVKGADNSALDAN------ 479 (514)
Q Consensus 408 ~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~s~d~~v~i~~~~~~~~~~~~------ 479 (514)
| ++++|++++.||.|++||+.+++ ....+.+|...+.+++|+|++ ++|++++.|+.|++++-.........
T Consensus 272 ~~~~~~l~s~~~dg~v~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~ 350 (416)
T 2pm9_A 272 HQDEHLLLSSGRDNTVLLWNPESAE-QLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETK 350 (416)
T ss_dssp SSCSSCEEEEESSSEEEEECSSSCC-EEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC------
T ss_pred CCCCCeEEEEeCCCCEEEeeCCCCc-cceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCccccccccc
Confidence 9 99999999999999999999874 457888999999999999999 89999999999999332211100000
Q ss_pred --------------------------CcccccccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 480 --------------------------GNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 480 --------------------------~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
.....+...+..++|+|||++||+++ ++.+.||.
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~ 411 (416)
T 2pm9_A 351 QQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITN 411 (416)
T ss_dssp ----------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBC
T ss_pred ccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEE
Confidence 00001567788999999999999998 56688885
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=317.09 Aligned_cols=307 Identities=15% Similarity=0.218 Sum_probs=235.6
Q ss_pred ccccccceEEEEEcCCC-CeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccc
Q 010256 31 EVQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g-~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (514)
..+|.+.|++++|+|++ ++|+||+.||+|+||++.+.... .......+.+|.
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~------------------~~~~~~~~~~h~--------- 430 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA------------------YGVAQRRLTGHS--------- 430 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC------------------SCEEEEEEECCS---------
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc------------------cccccceecCCC---------
Confidence 45899999999999865 79999999999999998765421 112345678898
Q ss_pred ccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
..|.+++| ++++++|++++.|++|++||+.+++.......+ .+.|. +++|+|+++.+
T Consensus 431 ---~~v~~v~~--s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h--------~~~v~-------~~~~s~~~~~l--- 487 (694)
T 3dm0_A 431 ---HFVEDVVL--SSDGQFALSGSWDGELRLWDLAAGVSTRRFVGH--------TKDVL-------SVAFSLDNRQI--- 487 (694)
T ss_dssp ---SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEECC--------SSCEE-------EEEECTTSSCE---
T ss_pred ---CcEEEEEE--CCCCCEEEEEeCCCcEEEEECCCCcceeEEeCC--------CCCEE-------EEEEeCCCCEE---
Confidence 88999999 567889999999999999999999876665544 34455 88999999998
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCC--CEEEEe-cCCeEEEEeccCCCc
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG--ETFISA-DDLRINLWNLEISNQ 266 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~-~d~~i~iwd~~~~~~ 266 (514)
++++.|++|++|| ...... .. ......+|...|.+++|+|++ ..|+++ .|++|++||+++.+.
T Consensus 488 ---------~s~s~D~~i~iwd-~~~~~~---~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~ 553 (694)
T 3dm0_A 488 ---------VSASRDRTIKLWN-TLGECK---YT-ISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL 553 (694)
T ss_dssp ---------EEEETTSCEEEEC-TTSCEE---EE-ECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCE
T ss_pred ---------EEEeCCCEEEEEE-CCCCcc---ee-eccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcE
Confidence 9999999999999 322111 11 111125789999999999986 578888 999999999986543
Q ss_pred eeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeE
Q 010256 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (514)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 346 (514)
.. .+.+|...|++++|+|++ ++|++|+.||.|++||+++++.. ..+.. ...|.+
T Consensus 554 ~~--------~~~~h~~~v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~~~~~----~~~~~-------------~~~v~~ 607 (694)
T 3dm0_A 554 RS--------TLAGHTGYVSTVAVSPDG-SLCASGGKDGVVLLWDLAEGKKL----YSLEA-------------NSVIHA 607 (694)
T ss_dssp EE--------EECCCSSCEEEEEECTTS-SEEEEEETTSBCEEEETTTTEEE----ECCBC-------------SSCEEE
T ss_pred EE--------EEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCceE----EEecC-------------CCcEEE
Confidence 32 467899999999999999 89999999999999999988753 22221 257999
Q ss_pred EEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccc----cccccCCccceeeEEEcCCCCEEEEEeCCCcE
Q 010256 347 IKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLC----DLYENDSIFDKFECCLSGDGGRVATGSYSNLF 422 (514)
Q Consensus 347 ~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 422 (514)
++|+|++.+++++.++.|+|||+.+ +..+..+..+........ ..........+.+++|+|||++|++|+.||.|
T Consensus 608 ~~~sp~~~~l~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i 686 (694)
T 3dm0_A 608 LCFSPNRYWLCAATEHGIKIWDLES-KSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVI 686 (694)
T ss_dssp EEECSSSSEEEEEETTEEEEEETTT-TEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEE
T ss_pred EEEcCCCcEEEEEcCCCEEEEECCC-CCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeE
Confidence 9999999999999888899999997 666666654322110000 00001111225689999999999999999999
Q ss_pred EEEecC
Q 010256 423 RVFGCS 428 (514)
Q Consensus 423 ~iwd~~ 428 (514)
+||++.
T Consensus 687 ~iW~i~ 692 (694)
T 3dm0_A 687 RVWGIG 692 (694)
T ss_dssp EEEEC-
T ss_pred EEEecc
Confidence 999985
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-37 Score=285.51 Aligned_cols=300 Identities=15% Similarity=0.159 Sum_probs=215.9
Q ss_pred eeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecc
Q 010256 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (514)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (514)
+....+.+|. +.|.+++|+ ++ +|++++.|++|++||+..+.......+
T Consensus 5 ~~~~~~~~h~------------~~v~~~~~s--~~--~las~~~D~~i~lw~~~~~~~~~~~~~---------------- 52 (330)
T 2hes_X 5 NLIKSLKLYK------------EKIWSFDFS--QG--ILATGSTDRKIKLVSVKYDDFTLIDVL---------------- 52 (330)
T ss_dssp EEEEEEECCS------------SCEEEEEEE--TT--EEEEEESSSCEEEEECSSSCCEEEEEE----------------
T ss_pred ccceeeccCC------------CceeeeccC--CC--EEEEEcCCCEEEEEEecCCCeEEEEEE----------------
Confidence 3567788998 889999995 44 899999999999999976421110000
Q ss_pred cccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEE
Q 010256 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 250 (514)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 250 (514)
...+|...|.+++|+|++++|++
T Consensus 53 ---------------------------------------------------------~~~~h~~~v~~v~~sp~~~~las 75 (330)
T 2hes_X 53 ---------------------------------------------------------DETAHKKAIRSVAWRPHTSLLAA 75 (330)
T ss_dssp ---------------------------------------------------------CTTCCCSCEEEEEECTTSSEEEE
T ss_pred ---------------------------------------------------------ecCCccCCEEEEEECCCCCEEEE
Confidence 01348899999999999999999
Q ss_pred e-cCCeEEEEeccCCCc---eeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccccccee
Q 010256 251 A-DDLRINLWNLEISNQ---SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 326 (514)
Q Consensus 251 ~-~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 326 (514)
| .|++|++||++.... .... ...+.+|...|.+++|+|++ ++|++|+.|+.|++||++........
T Consensus 76 ~s~D~~v~iw~~~~~~~~~~~~~~----~~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~~~~----- 145 (330)
T 2hes_X 76 GSFDSTVSIWAKEESADRTFEMDL----LAIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGEEYEC----- 145 (330)
T ss_dssp EETTSCEEEEEC-------CCCEE----EEEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCCCCEE-----
T ss_pred EeCCCcEEEEEcccCcCcccccee----EEEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCCCeEE-----
Confidence 9 999999999863221 0000 02467899999999999998 89999999999999999543211000
Q ss_pred ccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCC--CceeeeeeccccccccccccccCCccceee
Q 010256 327 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDS--GPVATFQVHEHLRPKLCDLYENDSIFDKFE 403 (514)
Q Consensus 327 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 403 (514)
...+.+|...|.+++|+|++.+|++++. ++|++||... + +++..+.+|... |.+
T Consensus 146 -------~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~-~~~~~~~~~~~h~~~---------------v~~ 202 (330)
T 2hes_X 146 -------ISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYD-DDWECVAVLNGHEGT---------------VWS 202 (330)
T ss_dssp -------EEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEET-TEEEEEEEECCCSSC---------------EEE
T ss_pred -------EEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC-CCeeEEEEccCCCCc---------------EEE
Confidence 1235567789999999999999999864 9999999875 3 466777777654 448
Q ss_pred EEEcCC--CCEEEEEeCCCcEEEEecCCCc-------eeeeeecC-CCcceeEEEECCCCCceeecCCCCeEEEeeCCCC
Q 010256 404 CCLSGD--GGRVATGSYSNLFRVFGCSEGS-------AESTTLEA-SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADN 473 (514)
Q Consensus 404 ~~~s~~--~~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~-~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~ 473 (514)
++|+|+ +.+|++|+.|+.|++||+..+. .....+.. |...|.+++|++++ +|++++.|+.|++.+....
T Consensus 203 ~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 203 SDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp EEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred EEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence 999998 7799999999999999987531 12234444 89999999999664 8999999999999332110
Q ss_pred CccccCCccccccc-ceEEEEEcC--CCCEEEEEe-cCcEEEEe
Q 010256 474 SALDANGNAFDFSM-KLLHLAWHP--SENSIACAA-SNSLYMYY 513 (514)
Q Consensus 474 ~~~~~~~~~~~~~~-~v~~~~~sp--d~~~l~~~~-~~~~~i~~ 513 (514)
...........|.. .|.+++|+| ++++||+++ ++.++||.
T Consensus 282 ~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~ 325 (330)
T 2hes_X 282 EWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWS 325 (330)
T ss_dssp EEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEE
T ss_pred ceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEE
Confidence 00001111124666 899999999 789999887 55688886
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-36 Score=283.80 Aligned_cols=288 Identities=14% Similarity=0.191 Sum_probs=236.1
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|++++|+|+|++|++|+.||.|++||+.+++ ....+.+|.
T Consensus 28 l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-----------------------~~~~~~~h~---------- 74 (369)
T 3zwl_B 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE-----------------------RLGTLDGHT---------- 74 (369)
T ss_dssp EECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC-----------------------EEEEECCCS----------
T ss_pred EEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch-----------------------hhhhhhhcC----------
Confidence 45899999999999999999999999999999987765 446678888
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|.+++| ++++.+|++++.|+.|++||+.+++.....
T Consensus 75 --~~v~~~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------------------------------------- 112 (369)
T 3zwl_B 75 --GTIWSIDV--DCFTKYCVTGSADYSIKLWDVSNGQCVATW-------------------------------------- 112 (369)
T ss_dssp --SCEEEEEE--CTTSSEEEEEETTTEEEEEETTTCCEEEEE--------------------------------------
T ss_pred --CcEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEe--------------------------------------
Confidence 88999999 557789999999999999999877543321
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cC-----CeEEEEeccCC
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD-----LRINLWNLEIS 264 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d-----~~i~iwd~~~~ 264 (514)
.+...|.+++|+|++++|+++ .+ +.|++||++..
T Consensus 113 ----------------------------------------~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~ 152 (369)
T 3zwl_B 113 ----------------------------------------KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERD 152 (369)
T ss_dssp ----------------------------------------ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEEC
T ss_pred ----------------------------------------ecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCC
Confidence 144678999999999999998 77 99999999866
Q ss_pred CceeeeeccC---CCcccccCC--ceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeec
Q 010256 265 NQSFNIVDVK---PANMEDLTE--VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 339 (514)
Q Consensus 265 ~~~~~~~~~~---~~~~~~~~~--~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (514)
.....+.... ...+..+.. .+.+++|+|++ ++|++++.||.|++||+++.... ... +..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~---~~~------------~~~ 216 (369)
T 3zwl_B 153 SATHELTKVSEEPIHKIITHEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVSNNYEY---VDS------------IDL 216 (369)
T ss_dssp TTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETTTTTEE---EEE------------EEC
T ss_pred ccceeecccccceeeeccCCcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECCCCcEe---EEE------------Eec
Confidence 5432221111 112334444 89999999998 89999999999999999873221 222 444
Q ss_pred cccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeC
Q 010256 340 IIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 418 (514)
Q Consensus 340 ~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 418 (514)
|...|.+++|+|++++|++++. +.|++||+++ ++.+..+..... +..++|+|+++++++++.
T Consensus 217 ~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~~----------------~~~~~~~~~~~~l~~~~~ 279 (369)
T 3zwl_B 217 HEKSISDMQFSPDLTYFITSSRDTNSFLVDVST-LQVLKKYETDCP----------------LNTAVITPLKEFIILGGG 279 (369)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEECSSC----------------EEEEEECSSSSEEEEEEC
T ss_pred CCCceeEEEECCCCCEEEEecCCceEEEEECCC-CceeeeecCCCC----------------ceeEEecCCCceEEEeec
Confidence 6678999999999999999864 9999999997 777777663221 348999999999999998
Q ss_pred CC--------------cEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 419 SN--------------LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 419 dg--------------~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
++ .+++||+.+++ ....+.+|...|.+++|+|++++|++++.||.|++
T Consensus 280 ~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~i 341 (369)
T 3zwl_B 280 QEAKDVTTTSANEGKFEARFYHKIFEE-EIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRL 341 (369)
T ss_dssp CC-------------CEEEEEETTTCC-EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CCCceEEEEecCCCcceeEEEecCCCc-chhheecccCcEEEEEECCCCCEEEEEcCCCeEEE
Confidence 88 89999999874 44788999999999999999999999999999999
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-37 Score=309.98 Aligned_cols=345 Identities=15% Similarity=0.161 Sum_probs=266.6
Q ss_pred cccccccc-eEEEEEcC--CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccc
Q 010256 30 EEVQEVDI-ISAIEFDK--SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (514)
Q Consensus 30 ~~~~h~~~-V~~~~~s~--~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 106 (514)
...+|.+. |++++|+| ++++||+|+.||.|+||++.+++... .+.......+..|.
T Consensus 58 ~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~---------------~~~~~~~~~~~~~~------ 116 (615)
T 1pgu_A 58 QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESN---------------SVEVNVKSEFQVLA------ 116 (615)
T ss_dssp EECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGT---------------EEEEEEEEEEECCS------
T ss_pred EEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccc---------------cccccccchhhccc------
Confidence 34579999 99999999 99999999999999999997552100 00122455677777
Q ss_pred cccccccceeEEEEeeCCCCcEEEEeeCC----CeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccC
Q 010256 107 KSLEIEEKINKIRWCQSANSALYLLSTND----KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN 182 (514)
Q Consensus 107 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 182 (514)
..|.+++| ++++++|++++.+ +.|++|| .++.......+ ...+. .+.|+|+
T Consensus 117 ------~~v~~~~~--s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~--------~~~v~-------~~~~~~~ 171 (615)
T 1pgu_A 117 ------GPISDISW--DFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGH--------SQRIN-------ACHLKQS 171 (615)
T ss_dssp ------SCEEEEEE--CTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSC--------SSCEE-------EEEECSS
T ss_pred ------ccEEEEEE--eCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecC--------CccEE-------EEEECCC
Confidence 88999999 5678899999887 7899998 33333333322 23444 8899999
Q ss_pred CC-ccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCcc---CeEEEEECCC-CCEEEEe-cCCeE
Q 010256 183 GG-CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDY---HINSISNNSD-GETFISA-DDLRI 256 (514)
Q Consensus 183 ~~-~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~-~~~l~s~-~d~~i 256 (514)
++ .+ ++++.++.|++|| ... .+.... +.+|.. .|.+++|+|+ +++|+++ .|+.|
T Consensus 172 ~~~~l------------~~~~~d~~v~vwd-~~~------~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 231 (615)
T 1pgu_A 172 RPMRS------------MTVGDDGSVVFYQ-GPP------FKFSAS-DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKI 231 (615)
T ss_dssp SSCEE------------EEEETTTEEEEEE-TTT------BEEEEE-ECSSSCTTCCEEEEEECSTTCCEEEEEETTCCE
T ss_pred CCcEE------------EEEeCCCcEEEEe-CCC------cceeee-ecccCCCCceEEEEEECCCCCCEEEEEeCCCeE
Confidence 98 56 8999999999999 322 222233 367888 9999999999 9999999 89999
Q ss_pred EEEeccCCCceeeeeccCCCcc-c---ccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccc-----------
Q 010256 257 NLWNLEISNQSFNIVDVKPANM-E---DLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH----------- 321 (514)
Q Consensus 257 ~iwd~~~~~~~~~~~~~~~~~~-~---~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~----------- 321 (514)
++||+++++... .+ . .|...|.+++|+ ++ .+|++++.|+.|++||+++++.....
T Consensus 232 ~vwd~~~~~~~~--------~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 301 (615)
T 1pgu_A 232 SCFDGKSGEFLK--------YIEDDQEPVQGGIFALSWL-DS-QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ 301 (615)
T ss_dssp EEEETTTCCEEE--------ECCBTTBCCCSCEEEEEES-SS-SEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCE
T ss_pred EEEECCCCCEeE--------EecccccccCCceEEEEEc-CC-CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCce
Confidence 999998665443 23 3 688999999999 87 89999999999999999865422100
Q ss_pred ------------------------------ccceeccCC-----------------------------------------
Q 010256 322 ------------------------------SKLFEEQEA----------------------------------------- 330 (514)
Q Consensus 322 ------------------------------~~~~~~~~~----------------------------------------- 330 (514)
...+..+..
T Consensus 302 ~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~ 381 (615)
T 1pgu_A 302 VGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNS 381 (615)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECC
T ss_pred eEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEEC
Confidence 000000000
Q ss_pred --------------------------------------------------------------------------------
Q 010256 331 -------------------------------------------------------------------------------- 330 (514)
Q Consensus 331 -------------------------------------------------------------------------------- 330 (514)
T Consensus 382 ~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 461 (615)
T 1pgu_A 382 KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAV 461 (615)
T ss_dssp STTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEE
T ss_pred CCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEE
Confidence
Q ss_pred ----CCc----------c--ceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeee-ccccccccccc
Q 010256 331 ----PGT----------R--SFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQV-HEHLRPKLCDL 392 (514)
Q Consensus 331 ----~~~----------~--~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~ 392 (514)
... . ..+.+|...|.+++|+|++++|++++. +.|++||+.+ ++.+..+.. |...
T Consensus 462 ~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~h~~~------- 533 (615)
T 1pgu_A 462 GLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS-REVKTSRWAFRTSK------- 533 (615)
T ss_dssp EETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEECCSCCCSSC-------
T ss_pred eecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCC-CcceeEeecCCCCc-------
Confidence 000 0 234557789999999999999999865 9999999997 777777665 5543
Q ss_pred cccCCccceeeEEEcC----------CCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCC
Q 010256 393 YENDSIFDKFECCLSG----------DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLS 462 (514)
Q Consensus 393 ~~~~~~~~v~~~~~s~----------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d 462 (514)
|.+++|+| ++++|++++.||.|++||+.++......+.+|...|.+++|+|+++ |++++.|
T Consensus 534 --------v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d 604 (615)
T 1pgu_A 534 --------INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGAD 604 (615)
T ss_dssp --------EEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETT
T ss_pred --------eeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCC
Confidence 45999999 9999999999999999999987556678999999999999999999 9999999
Q ss_pred CeEEE
Q 010256 463 GVVRR 467 (514)
Q Consensus 463 ~~v~i 467 (514)
+.|++
T Consensus 605 ~~v~i 609 (615)
T 1pgu_A 605 ACIKR 609 (615)
T ss_dssp SCEEE
T ss_pred ceEEE
Confidence 99999
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-37 Score=318.29 Aligned_cols=382 Identities=14% Similarity=0.157 Sum_probs=283.1
Q ss_pred cccccchhhccccCcccccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceee
Q 010256 14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK 93 (514)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (514)
-..|+.... . .......|...|++++|+|++++|++|+.||.|++||+.+++ ..
T Consensus 37 v~iwd~~~~--~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~-----------------------~~ 90 (814)
T 3mkq_A 37 VEIWNYETQ--V-EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE-----------------------KV 90 (814)
T ss_dssp EEEEETTTT--E-EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC-----------------------EE
T ss_pred EEEEECCCC--c-eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----------------------EE
Confidence 346776542 1 111234689999999999999999999999999999998766 34
Q ss_pred eeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCcc-EEEEEeeccCCCccccCCcceecccc
Q 010256 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-KVKKVFDWNVHPEKAAGNGPIFGSHV 172 (514)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (514)
..+.+|. ..|.+++| ++++.+|++++.||.|++||+.++ ........+ .+.+.
T Consensus 91 ~~~~~~~------------~~v~~~~~--s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~--------~~~v~---- 144 (814)
T 3mkq_A 91 VDFEAHP------------DYIRSIAV--HPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGH--------EHFVM---- 144 (814)
T ss_dssp EEEECCS------------SCEEEEEE--CSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECC--------SSCEE----
T ss_pred EEEecCC------------CCEEEEEE--eCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCC--------CCcEE----
Confidence 5677887 88999999 567779999999999999999887 444444433 23344
Q ss_pred cCCceeecc-CCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC--CCCEEE
Q 010256 173 SAIPKSYMA-NGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFI 249 (514)
Q Consensus 173 ~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~ 249 (514)
.++|+| +++.+ ++++.++.|++|| +... .....+...+...+.+++|+| ++.+|+
T Consensus 145 ---~~~~~p~~~~~l------------~~~~~dg~v~vwd-~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 202 (814)
T 3mkq_A 145 ---CVAFNPKDPSTF------------ASGCLDRTVKVWS-LGQS------TPNFTLTTGQERGVNYVDYYPLPDKPYMI 202 (814)
T ss_dssp ---EEEEETTEEEEE------------EEEETTSEEEEEE-TTCS------SCSEEEECCCTTCCCEEEECCSTTCCEEE
T ss_pred ---EEEEEcCCCCEE------------EEEeCCCeEEEEE-CCCC------cceeEEecCCCCCEEEEEEEECCCCCEEE
Confidence 789999 78888 9999999999999 3222 122233245558899999999 999999
Q ss_pred Ee-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceecc
Q 010256 250 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 328 (514)
Q Consensus 250 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 328 (514)
++ .|+.|++||++++.... .+.+|...|.+++|+|++ .+|++++.||.|++||+.+++.. ..
T Consensus 203 ~~~~dg~i~~~d~~~~~~~~--------~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~v~vwd~~~~~~~----~~---- 265 (814)
T 3mkq_A 203 TASDDLTIKIWDYQTKSCVA--------TLEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYKVE----KT---- 265 (814)
T ss_dssp EECTTSEEEEEETTTTEEEE--------EEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCSEE----EE----
T ss_pred EEeCCCEEEEEECCCCcEEE--------EEcCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEE----EE----
Confidence 99 99999999998655432 456788999999999999 89999999999999999887652 22
Q ss_pred CCCCccceeeccccceeEEEEecCCC--EEEEEeCCeEEEEEccCCCCceeeeeeccccc------cc-----------c
Q 010256 329 EAPGTRSFFTEIIASISDIKFARNGR--HILSRDYMTLKLWDINMDSGPVATFQVHEHLR------PK-----------L 389 (514)
Q Consensus 329 ~~~~~~~~~~~~~~~i~~~~~s~~g~--~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~------~~-----------~ 389 (514)
+..|...+.+++|+|++. +++++.++.+.+|++.. ..+...+....... .. .
T Consensus 266 --------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 336 (814)
T 3mkq_A 266 --------LNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN-DEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGN 336 (814)
T ss_dssp --------ECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSC-CSCCEEECSSSEEEEECCTTSCTTCEEEEECCSC
T ss_pred --------eecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCC-CCceeEECCCCCEEEECcccccceeeeeeecccc
Confidence 333457899999999987 57778888899999875 33322221110000 00 0
Q ss_pred ccccc-----------cCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceee
Q 010256 390 CDLYE-----------NDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPL 458 (514)
Q Consensus 390 ~~~~~-----------~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 458 (514)
..+.. ...-..+.+++|+|+|++|++++ |+.+.+|++..... .+...+..++|+|+++++++
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~------~~~~~i~~~~~spdg~~la~ 409 (814)
T 3mkq_A 337 EEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRN------KAFGKCQDFVWGPDSNSYAL 409 (814)
T ss_dssp CCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEE------EEEEECSEEEECTTSSCEEE
T ss_pred cccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccccc------cCCCceEEEEEeCCCCeEEE
Confidence 00000 00111345899999999999988 89999999864321 23467889999999999999
Q ss_pred cCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCC---CEEE-EEecCcEEEEe
Q 010256 459 GSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSE---NSIA-CAASNSLYMYY 513 (514)
Q Consensus 459 ~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~---~~l~-~~~~~~~~i~~ 513 (514)
++.++.+++++. ..+|...+.+++|+||+ ++|+ .+.++.+.+|.
T Consensus 410 ~~~~g~v~l~~~-----------~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d 457 (814)
T 3mkq_A 410 IDETGQIKYYKN-----------FKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFD 457 (814)
T ss_dssp ECTTCCEEEEET-----------TEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEEC
T ss_pred EeCCCcEEEEEC-----------CCCccceEEcCCcCccceecceEEEEecCCEEEEEE
Confidence 999999999421 12356788999999998 4555 55677888885
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-36 Score=279.60 Aligned_cols=291 Identities=17% Similarity=0.227 Sum_probs=221.3
Q ss_pred ceeeeeeccCCCccccccccccccceeEEEEee----CCCCcEEEEeeCCCeEEEEEcCccE-------EEEEeeccCCC
Q 010256 90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQ----SANSALYLLSTNDKTIKLWKVQEKK-------VKKVFDWNVHP 158 (514)
Q Consensus 90 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~----~~~~~~l~s~~~d~~i~iw~~~~~~-------~~~~~~~~~~~ 158 (514)
......+.+|. +.|++++|.+ .+++.+|++|+.|++|++||+.+++ .......+
T Consensus 11 ~~~~~~l~gH~------------~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h--- 75 (343)
T 2xzm_R 11 VVKRGILEGHS------------DWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH--- 75 (343)
T ss_dssp EEEEEEEECCS------------SCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCC---
T ss_pred eeeeeeeccch------------hhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccC---
Confidence 34567789998 8999999932 2367899999999999999997542 22222222
Q ss_pred ccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEE
Q 010256 159 EKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINS 238 (514)
Q Consensus 159 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 238 (514)
...|. .++|+|++..+ ++++.|+.|++|| +... ++... +.+|...|.+
T Consensus 76 -----~~~V~-------~~~~~~~~~~l------------~s~s~D~~v~lwd-~~~~------~~~~~-~~~h~~~v~~ 123 (343)
T 2xzm_R 76 -----NHFVS-------DLALSQENCFA------------ISSSWDKTLRLWD-LRTG------TTYKR-FVGHQSEVYS 123 (343)
T ss_dssp -----SSCEE-------EEEECSSTTEE------------EEEETTSEEEEEE-TTSS------CEEEE-EECCCSCEEE
T ss_pred -----CCceE-------EEEECCCCCEE------------EEEcCCCcEEEEE-CCCC------cEEEE-EcCCCCcEEE
Confidence 23444 78999999988 9999999999999 3322 22333 3789999999
Q ss_pred EEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCC---------cEEEEEecCCeEE
Q 010256 239 ISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC---------NMLAYSSSKGSIR 308 (514)
Q Consensus 239 ~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~---------~~l~~~~~dg~i~ 308 (514)
++|+|++++|+++ .|++|++||+.. ...... .....|...|.+++|+|++. .+|++++.|+.|+
T Consensus 124 v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~ 197 (343)
T 2xzm_R 124 VAFSPDNRQILSAGAEREIKLWNILG-ECKFSS-----AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLK 197 (343)
T ss_dssp EEECSSTTEEEEEETTSCEEEEESSS-CEEEEC-----CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEE
T ss_pred EEECCCCCEEEEEcCCCEEEEEeccC-Cceeee-----ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEE
Confidence 9999999999999 999999999973 322211 12346888999999999862 5899999999999
Q ss_pred EEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeecccccc
Q 010256 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRP 387 (514)
Q Consensus 309 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~ 387 (514)
+||... .. . ..+.+|...|.+++|+|+|++|++|+ |+.|++||+.....+...+. +...
T Consensus 198 iwd~~~-~~----~------------~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~-- 257 (343)
T 2xzm_R 198 VWNTNF-QI----R------------YTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGST-- 257 (343)
T ss_dssp EEETTT-EE----E------------EEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSC--
T ss_pred EEcCCC-ce----e------------EEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CCCc--
Confidence 999432 22 1 12456778999999999999999986 49999999954244444332 2111
Q ss_pred ccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceee-eeec-----------CCCcceeEEEECCCCCc
Q 010256 388 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES-TTLE-----------ASKNPMRRQVQTPSRPS 455 (514)
Q Consensus 388 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~-----------~~~~~v~~~~~~~~~~~ 455 (514)
|.+++|+|++++++++ .|+.|++|++.++.... ..+. +|...+.+++|+|++++
T Consensus 258 -------------v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 323 (343)
T 2xzm_R 258 -------------INQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKK 323 (343)
T ss_dssp -------------EEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCC
T ss_pred -------------EEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCe
Confidence 4489999999988755 57889999998764321 1333 68888999999999999
Q ss_pred eeecCCCCeEEE
Q 010256 456 RPLGSLSGVVRR 467 (514)
Q Consensus 456 l~s~s~d~~v~i 467 (514)
|++|+.||.|++
T Consensus 324 l~sg~~Dg~v~~ 335 (343)
T 2xzm_R 324 LFAGFTDGVIRT 335 (343)
T ss_dssp EEEEETTSEEEE
T ss_pred EEEecCCceEEE
Confidence 999999999999
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-37 Score=277.13 Aligned_cols=258 Identities=13% Similarity=0.224 Sum_probs=199.4
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|++++|+|+|++||+|+.|++|+||++.+... +....+.+|.
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~---------------------~~~~~l~gH~---------- 53 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH---------------------KLIDTLTGHE---------- 53 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB---------------------CCCEEECCCS----------
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc---------------------EEEEEEcccc----------
Confidence 347999999999999999999999999999999864321 1446788998
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
+.|.+++|++..++.+|++++.|++|++||+.+++....
T Consensus 54 --~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~--------------------------------------- 92 (297)
T 2pm7_B 54 --GPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQI--------------------------------------- 92 (297)
T ss_dssp --SCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCC---------------------------------------
T ss_pred --CCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEE---------------------------------------
Confidence 889999996544578999999999999999876531000
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC--CCEEEEe-cCCeEEEEeccCCCce
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQS 267 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~~ 267 (514)
.. +.+|...|.+++|+|+ +.+|+++ .|++|++||++.....
T Consensus 93 -----------------------------------~~-~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~ 136 (297)
T 2pm7_B 93 -----------------------------------AV-HAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT 136 (297)
T ss_dssp -----------------------------------EE-ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB
T ss_pred -----------------------------------EE-eecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce
Confidence 00 2567889999999998 8899999 9999999999865322
Q ss_pred eeeeccCCCcccccCCceEEEEEecCC------------CcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccc
Q 010256 268 FNIVDVKPANMEDLTEVITSAEFHPTH------------CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRS 335 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~~v~~~p~~------------~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 335 (514)
.. ..+.+|...|.+++|+|++ .++|++|+.|+.|++||++++....... .
T Consensus 137 ~~------~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~------------~ 198 (297)
T 2pm7_B 137 SP------IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE------------S 198 (297)
T ss_dssp CC------EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEE------------E
T ss_pred ee------eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEE------------E
Confidence 11 1456789999999999973 2689999999999999998764211101 2
Q ss_pred eeeccccceeEEEEecCC---CEEEEEe-CCeEEEEEccCCCCce--eee--eeccccccccccccccCCccceeeEEEc
Q 010256 336 FFTEIIASISDIKFARNG---RHILSRD-YMTLKLWDINMDSGPV--ATF--QVHEHLRPKLCDLYENDSIFDKFECCLS 407 (514)
Q Consensus 336 ~~~~~~~~i~~~~~s~~g---~~l~~~~-~~~i~iwd~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s 407 (514)
.+.+|...|.+++|+|++ .+|++++ |++|+|||++...... ..+ ..|.. .|++++|+
T Consensus 199 ~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~---------------~v~~~~~s 263 (297)
T 2pm7_B 199 TLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD---------------VLWRASWS 263 (297)
T ss_dssp EECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSS---------------CEEEEEEC
T ss_pred EecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCC---------------cEEEEEEC
Confidence 356677899999999985 7898876 5999999998622111 111 11211 25589999
Q ss_pred CCCCEEEEEeCCCcEEEEecCC
Q 010256 408 GDGGRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 408 ~~~~~l~s~~~dg~i~iwd~~~ 429 (514)
|+|++|++++.||.|+||+...
T Consensus 264 ~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 264 LSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp SSSCCEEEEETTSCEEEEEECT
T ss_pred CCCCEEEEEcCCCcEEEEEECC
Confidence 9999999999999999999863
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=284.32 Aligned_cols=303 Identities=14% Similarity=0.165 Sum_probs=234.7
Q ss_pred ccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccc
Q 010256 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (514)
.|.+.|++++|+|++++||+|+.||.|++|++.+++. .....+.+|.
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~---------------------~~~~~~~~h~------------ 52 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW---------------------VQVHELKEHN------------ 52 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE---------------------EEEEEEECCS------------
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE---------------------EeeeeecCCC------------
Confidence 4889999999999999999999999999999976642 1445677887
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
..|.+++|+ +++.+|++++.|+.|++||+.+++......
T Consensus 53 ~~v~~~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--------------------------------------- 91 (372)
T 1k8k_C 53 GQVTGVDWA--PDSNRIVTCGTDRNAYVWTLKGRTWKPTLV--------------------------------------- 91 (372)
T ss_dssp SCEEEEEEE--TTTTEEEEEETTSCEEEEEEETTEEEEEEE---------------------------------------
T ss_pred CcccEEEEe--CCCCEEEEEcCCCeEEEEECCCCeeeeeEE---------------------------------------
Confidence 889999995 567899999999999999998775332211
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
...|...|.+++|+|++++|+++ .|+.|++||++.........
T Consensus 92 ------------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~ 135 (372)
T 1k8k_C 92 ------------------------------------ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK 135 (372)
T ss_dssp ------------------------------------CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE
T ss_pred ------------------------------------eecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeee
Confidence 14566789999999999999999 89999999998665321110
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccccc-ceec-cCCCCccceeeccccceeEEEE
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK-LFEE-QEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
.....|...|.+++|+|++ ++|++++.||.|++||++.......... .+.. .........+.+|...|.+++|
T Consensus 136 ----~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 210 (372)
T 1k8k_C 136 ----HIKKPIRSTVLSLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCF 210 (372)
T ss_dssp ----EECTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEE
T ss_pred ----eeecccCCCeeEEEEcCCC-CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEE
Confidence 0235678899999999998 8999999999999999864322110000 0000 0001112334567789999999
Q ss_pred ecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecC
Q 010256 350 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 350 s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 428 (514)
+|++++|++++. +.|++||+++ ++++..+..|... +.+++|+|++++|+++ .|+.|++|++.
T Consensus 211 ~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~---------------v~~~~~~~~~~~l~~~-~d~~i~i~~~~ 273 (372)
T 1k8k_C 211 SANGSRVAWVSHDSTVCLADADK-KMAVATLASETLP---------------LLAVTFITESSLVAAG-HDCFPVLFTYD 273 (372)
T ss_dssp CSSSSEEEEEETTTEEEEEEGGG-TTEEEEEECSSCC---------------EEEEEEEETTEEEEEE-TTSSCEEEEEE
T ss_pred CCCCCEEEEEeCCCEEEEEECCC-CceeEEEccCCCC---------------eEEEEEecCCCEEEEE-eCCeEEEEEcc
Confidence 999999999765 9999999997 8888888877644 4489999999988887 89999999998
Q ss_pred C--Ccee-------------------------------e------eee-cCCCcceeEEEEC-CCC---CceeecCCCCe
Q 010256 429 E--GSAE-------------------------------S------TTL-EASKNPMRRQVQT-PSR---PSRPLGSLSGV 464 (514)
Q Consensus 429 ~--~~~~-------------------------------~------~~~-~~~~~~v~~~~~~-~~~---~~l~s~s~d~~ 464 (514)
. +... . ..+ .+|..+|.++++. +++ ++|++++.||.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~ 353 (372)
T 1k8k_C 274 SAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGG 353 (372)
T ss_dssp TTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSE
T ss_pred CcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCc
Confidence 7 3100 0 222 4899999999865 676 99999999999
Q ss_pred EEE
Q 010256 465 VRR 467 (514)
Q Consensus 465 v~i 467 (514)
|++
T Consensus 354 i~~ 356 (372)
T 1k8k_C 354 MSI 356 (372)
T ss_dssp EEE
T ss_pred eEE
Confidence 999
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-36 Score=276.51 Aligned_cols=284 Identities=11% Similarity=0.169 Sum_probs=228.9
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|++++|+|++++|++++ ||.|++|++.+++.... .......+|.
T Consensus 47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~------------------~~~~~~~~~~---------- 97 (337)
T 1gxr_A 47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSP------------------VSQLDCLNRD---------- 97 (337)
T ss_dssp EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSC------------------SEEEECSCTT----------
T ss_pred eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceee------------------eecccccCCC----------
Confidence 457999999999999999999998 99999999987653200 0111122565
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|.+++| +++++++++++.|+.|++||+.+++......
T Consensus 98 --~~v~~~~~--~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~------------------------------------- 136 (337)
T 1gxr_A 98 --NYIRSCKL--LPDGCTLIVGGEASTLSIWDLAAPTPRIKAE------------------------------------- 136 (337)
T ss_dssp --SBEEEEEE--CTTSSEEEEEESSSEEEEEECCCC--EEEEE-------------------------------------
T ss_pred --CcEEEEEE--cCCCCEEEEEcCCCcEEEEECCCCCcceeee-------------------------------------
Confidence 88999999 5677899999999999999998765211110
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
...|...|.+++|+|++++|+++ .|+.|++||+++.+...
T Consensus 137 --------------------------------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~- 177 (337)
T 1gxr_A 137 --------------------------------------LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR- 177 (337)
T ss_dssp --------------------------------------EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-
T ss_pred --------------------------------------cccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceee-
Confidence 24567889999999999999999 99999999998654432
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
.+..|...+.+++|+|++ ++|++++.|+.|++||+++++.. ..+ .+...+.+++|
T Consensus 178 -------~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~----~~~-------------~~~~~v~~~~~ 232 (337)
T 1gxr_A 178 -------QFQGHTDGASCIDISNDG-TKLWTGGLDNTVRSWDLREGRQL----QQH-------------DFTSQIFSLGY 232 (337)
T ss_dssp -------EECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEE----EEE-------------ECSSCEEEEEE
T ss_pred -------eeecccCceEEEEECCCC-CEEEEEecCCcEEEEECCCCceE----eee-------------cCCCceEEEEE
Confidence 356688999999999998 89999999999999999987653 222 23367999999
Q ss_pred ecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecC
Q 010256 350 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 350 s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 428 (514)
+|+++++++++. +.|++||+.. .+ ...+..|... +.+++|+|++++|++++.||.|++||+.
T Consensus 233 s~~~~~l~~~~~~~~i~~~~~~~-~~-~~~~~~~~~~---------------v~~~~~~~~~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 233 CPTGEWLAVGMESSNVEVLHVNK-PD-KYQLHLHESC---------------VLSLKFAYCGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp CTTSSEEEEEETTSCEEEEETTS-SC-EEEECCCSSC---------------EEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCCCCEEEEEcCCCcEEEEECCC-CC-eEEEcCCccc---------------eeEEEECCCCCEEEEecCCCcEEEEECC
Confidence 999999999865 9999999986 43 3344444433 4489999999999999999999999999
Q ss_pred CCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 429 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 429 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+++.. ....|...+.++.|+|++++|++++.|+.|++
T Consensus 296 ~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 332 (337)
T 1gxr_A 296 YGASI--FQSKESSSVLSCDISVDDKYIVTGSGDKKATV 332 (337)
T ss_dssp TCCEE--EEEECSSCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred CCeEE--EEecCCCcEEEEEECCCCCEEEEecCCCeEEE
Confidence 87544 34568889999999999999999999999998
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=287.20 Aligned_cols=297 Identities=15% Similarity=0.226 Sum_probs=221.2
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccc---cCCcceecccccCCceeeccCCCccccc
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKA---AGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
..|.+++| +++|++|++++ ++.+++|++.+++.......+...... ..............+++|+|+|+.+
T Consensus 65 ~~V~~v~f--spdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l--- 138 (393)
T 1erj_A 65 SVVCCVKF--SNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL--- 138 (393)
T ss_dssp SCCCEEEE--CTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE---
T ss_pred CEEEEEEE--CCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEE---
Confidence 88999999 56888998876 689999999998766554332111000 0000000000012278999999998
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCcee
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 268 (514)
++++.|+.|++|| +... +.... +.+|...|.+++|+|++++|+++ .|++|++||+++++...
T Consensus 139 ---------~s~~~d~~i~iwd-~~~~------~~~~~-~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~ 201 (393)
T 1erj_A 139 ---------ATGAEDRLIRIWD-IENR------KIVMI-LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL 201 (393)
T ss_dssp ---------EEEETTSCEEEEE-TTTT------EEEEE-ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred ---------EEEcCCCeEEEEE-CCCC------cEEEE-EccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEE
Confidence 9999999999999 3322 22223 37899999999999999999999 99999999998665433
Q ss_pred eeeccCCCcccccCCceEEEEEec-CCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEE
Q 010256 269 NIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (514)
Q Consensus 269 ~~~~~~~~~~~~~~~~i~~v~~~p-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 347 (514)
.+ .+...+.+++|+| ++ .+|++|+.|+.|++||++++... ..+... .....+|...|.++
T Consensus 202 ~~---------~~~~~v~~~~~~~~~~-~~l~~~s~d~~v~iwd~~~~~~~----~~~~~~-----~~~~~~h~~~v~~v 262 (393)
T 1erj_A 202 TL---------SIEDGVTTVAVSPGDG-KYIAAGSLDRAVRVWDSETGFLV----ERLDSE-----NESGTGHKDSVYSV 262 (393)
T ss_dssp EE---------ECSSCEEEEEECSTTC-CEEEEEETTSCEEEEETTTCCEE----EEEC-----------CCCSSCEEEE
T ss_pred EE---------EcCCCcEEEEEECCCC-CEEEEEcCCCcEEEEECCCCcEE----Eeeccc-----ccCCCCCCCCEEEE
Confidence 21 2466799999999 66 89999999999999999987653 222111 11135677899999
Q ss_pred EEecCCCEEEEEe-CCeEEEEEccCCC-----------CceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEE
Q 010256 348 KFARNGRHILSRD-YMTLKLWDINMDS-----------GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT 415 (514)
Q Consensus 348 ~~s~~g~~l~~~~-~~~i~iwd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 415 (514)
+|+|+|++|++|+ |++|++||++... .+...+.+|... |.+++|+|++++|++
T Consensus 263 ~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~---------------v~~~~~~~~~~~l~s 327 (393)
T 1erj_A 263 VFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF---------------VLSVATTQNDEYILS 327 (393)
T ss_dssp EECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSC---------------EEEEEECGGGCEEEE
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCc---------------EEEEEECCCCCEEEE
Confidence 9999999999986 5999999997521 123344444433 458999999999999
Q ss_pred EeCCCcEEEEecCCCceeeeeecCCCcceeEEEECC------CCCceeecCCCCeEEE
Q 010256 416 GSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTP------SRPSRPLGSLSGVVRR 467 (514)
Q Consensus 416 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~l~s~s~d~~v~i 467 (514)
|+.|+.|++||+.+++. ...+.+|...|.++++++ ++++|++|+.|++|++
T Consensus 328 gs~D~~v~iwd~~~~~~-~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~i 384 (393)
T 1erj_A 328 GSKDRGVLFWDKKSGNP-LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 384 (393)
T ss_dssp EETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEE
T ss_pred EeCCCeEEEEECCCCeE-EEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEE
Confidence 99999999999998754 478899999999999876 6889999999999999
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-36 Score=284.25 Aligned_cols=298 Identities=13% Similarity=0.179 Sum_probs=228.2
Q ss_pred cccccceEEEEEcCCC-CeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 32 VQEVDIISAIEFDKSG-DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g-~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
.+|.+.|++++|+|++ ++||+|+.||.|+|||+.+++.. ......+|.
T Consensus 70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---------------------~~~~~~~h~---------- 118 (383)
T 3ei3_B 70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT---------------------SFIQGMGPG---------- 118 (383)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE---------------------EEECCCSTT----------
T ss_pred cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc---------------------eeeecCCcC----------
Confidence 4789999999999999 99999999999999999866532 222234677
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|.+++|+| .++.+|++++.|+.|++||+.+........
T Consensus 119 --~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------------------------------------- 158 (383)
T 3ei3_B 119 --DAITGMKFNQ-FNTNQLFVSSIRGATTLRDFSGSVIQVFAK------------------------------------- 158 (383)
T ss_dssp --CBEEEEEEET-TEEEEEEEEETTTEEEEEETTSCEEEEEEC-------------------------------------
T ss_pred --CceeEEEeCC-CCCCEEEEEeCCCEEEEEECCCCceEEEec-------------------------------------
Confidence 8899999964 156799999999999999998643221100
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
...|...|.+++|+|++++|+++ .|+.|++||++ ++...
T Consensus 159 --------------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~- 198 (383)
T 3ei3_B 159 --------------------------------------TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIF- 198 (383)
T ss_dssp --------------------------------------CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEE-
T ss_pred --------------------------------------cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEE-
Confidence 13455789999999999999999 99999999995 33332
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
.+..|...|.+++|+|++..+|++++.|+.|++||+++.+........ .+|...|.+++|
T Consensus 199 -------~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------------~~~~~~v~~~~~ 258 (383)
T 3ei3_B 199 -------KEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAE-------------MPHEKPVNAAYF 258 (383)
T ss_dssp -------EEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEE-------------EECSSCEEEEEE
T ss_pred -------EeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEE-------------ecCCCceEEEEE
Confidence 456789999999999999339999999999999999885432111111 246689999999
Q ss_pred ec-CCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccc----cccccccCCccceeeEEEcCCCCEEEEEeCCCcEE
Q 010256 350 AR-NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPK----LCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFR 423 (514)
Q Consensus 350 s~-~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 423 (514)
+| ++++|++++ |+.|++||+++ ++.+..+..|...... +...+. ....+..++|+|++++ +++.||.|+
T Consensus 259 s~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~~~~s~dg~~--s~s~d~~i~ 333 (383)
T 3ei3_B 259 NPTDSTKLLTTDQRNEIRVYSSYD-WSKPDQIIIHPHRQFQHLTPIKATWH--PMYDLIVAGRYPDDQL--LLNDKRTID 333 (383)
T ss_dssp CTTTSCEEEEEESSSEEEEEETTB-TTSCSEEEECCBCCCTTSCCCCCEEC--SSSSEEEEECBCCTTT--CTTCCCCEE
T ss_pred cCCCCCEEEEEcCCCcEEEEECCC-CccccccccccccccccccceEEecc--CCCCceEEEecCCccc--ccCCCCeEE
Confidence 99 999999976 49999999997 7777777766532110 000000 0012335777888877 788999999
Q ss_pred EEecCCCceeeeeecC--CCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 424 VFGCSEGSAESTTLEA--SKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 424 iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+||+.+++. ...+.+ |...+..++|+|++++|++++ |+.|++
T Consensus 334 iwd~~~~~~-~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~i 377 (383)
T 3ei3_B 334 IYDANSGGL-VHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILI 377 (383)
T ss_dssp EEETTTCCE-EEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEE
T ss_pred EEecCCCce-eeeecCCCCCceEEEEEEecCccEEEEec-CCcEEE
Confidence 999998754 466665 567788889999999999997 999999
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-37 Score=287.13 Aligned_cols=305 Identities=11% Similarity=0.100 Sum_probs=214.6
Q ss_pred ccceEEEEEcCCCCeEEEecCC-------CeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccc
Q 010256 35 VDIISAIEFDKSGDHLATGDRG-------GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (514)
.-+|.|++|+|||++|++|+.+ +.|++|++....... ...+ .......+.+|+
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~--~~~~-----------~~~~~~~l~~~~------- 73 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTE--KEQF-----------HILSEFALEDND------- 73 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSH--HHHE-----------EEEEEEECCTTS-------
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcce--eeee-----------eeeeEEEccCCC-------
Confidence 3579999999999999998743 369999997654310 0000 000112456666
Q ss_pred ccccccceeEEEEeeCCCCcEEEEe-----------eCCCeEEEEEcCccE--EEEEeeccCCCccccCCcceecccccC
Q 010256 108 SLEIEEKINKIRWCQSANSALYLLS-----------TNDKTIKLWKVQEKK--VKKVFDWNVHPEKAAGNGPIFGSHVSA 174 (514)
Q Consensus 108 ~~~~~~~v~~i~~~~~~~~~~l~s~-----------~~d~~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~ 174 (514)
..|.++++. .+ .++++ +.|+.+++|++.... ............ ......+.
T Consensus 74 -----~~v~s~~~~--~~--~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------ 137 (365)
T 4h5i_A 74 -----DSPTAIDAS--KG--IILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDAS-TNADDYTK------ 137 (365)
T ss_dssp -----CCCCEEEEE--TT--EEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCC-CCTTCCEE------
T ss_pred -----CceEEEEeC--CC--EEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeec-CCcccCEE------
Confidence 778888773 32 45543 467889999986542 222222111110 00011122
Q ss_pred CceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCC
Q 010256 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDL 254 (514)
Q Consensus 175 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~ 254 (514)
.++|+|||+.+.+ ++++.|++|++|| .... .+... ..|...|.+++|+|+|++|+++.++
T Consensus 138 -~v~fSpDg~~la~----------as~~~d~~i~iwd-~~~~------~~~~~--~~~~~~V~~v~fspdg~~l~s~s~~ 197 (365)
T 4h5i_A 138 -LVYISREGTVAAI----------ASSKVPAIMRIID-PSDL------TEKFE--IETRGEVKDLHFSTDGKVVAYITGS 197 (365)
T ss_dssp -EEEECTTSSCEEE----------EESCSSCEEEEEE-TTTT------EEEEE--EECSSCCCEEEECTTSSEEEEECSS
T ss_pred -EEEEcCCCCEEEE----------EECCCCCEEEEeE-CCCC------cEEEE--eCCCCceEEEEEccCCceEEeccce
Confidence 6899999998611 4677899999999 3322 22222 3577889999999999999999666
Q ss_pred eEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCC----eEEEEEcCCCccccccccceeccCC
Q 010256 255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG----SIRLIDMRQSALCDTHSKLFEEQEA 330 (514)
Q Consensus 255 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg----~i~~wd~~~~~~~~~~~~~~~~~~~ 330 (514)
.+++|+..+++..... ....|...|.+++|+|++ .++++++.|+ .+++||+.........
T Consensus 198 ~~~~~~~~~~~~~~~~------~~~~~~~~v~~v~fspdg-~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~--------- 261 (365)
T 4h5i_A 198 SLEVISTVTGSCIARK------TDFDKNWSLSKINFIADD-TVLIAASLKKGKGIVLTKISIKSGNTSVLR--------- 261 (365)
T ss_dssp CEEEEETTTCCEEEEE------CCCCTTEEEEEEEEEETT-EEEEEEEESSSCCEEEEEEEEETTEEEEEE---------
T ss_pred eEEEEEeccCcceeee------ecCCCCCCEEEEEEcCCC-CEEEEEecCCcceeEEeecccccceeccee---------
Confidence 6777777666554332 345688889999999999 8999999887 6888998765432111
Q ss_pred CCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeee-eeccccccccccccccCCccceeeEEEcC
Q 010256 331 PGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATF-QVHEHLRPKLCDLYENDSIFDKFECCLSG 408 (514)
Q Consensus 331 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (514)
...+.+|...|++++|+|+|++||+|+. ++|+|||+++ ++++..+ .+|... |++++|+|
T Consensus 262 ---~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~-~~~~~~~~~gH~~~---------------V~~v~fSp 322 (365)
T 4h5i_A 262 ---SKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKD-LSMSKIFKQAHSFA---------------ITEVTISP 322 (365)
T ss_dssp ---EEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTT-TEEEEEETTSSSSC---------------EEEEEECT
T ss_pred ---eeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCC-CcEEEEecCcccCC---------------EEEEEECC
Confidence 1124566789999999999999999865 9999999997 7887764 677765 45999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCC
Q 010256 409 DGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 409 ~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
||++||+|+.|++|+|||+...
T Consensus 323 dg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 323 DSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp TSCEEEEEETTSEEEEEECCTT
T ss_pred CCCEEEEEeCCCeEEEEEcCCC
Confidence 9999999999999999999754
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=284.81 Aligned_cols=313 Identities=11% Similarity=0.204 Sum_probs=245.0
Q ss_pred ccccccce-EEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccc
Q 010256 31 EVQEVDII-SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (514)
Q Consensus 31 ~~~h~~~V-~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (514)
..+|.+.| +|++ ++|++|++|+.||.|++||+.+++ ....+.+|.
T Consensus 114 l~~h~~~v~~~~~--~~g~~l~sg~~dg~i~vwd~~~~~-----------------------~~~~~~~h~--------- 159 (445)
T 2ovr_B 114 LKGHDDHVITCLQ--FCGNRIVSGSDDNTLKVWSAVTGK-----------------------CLRTLVGHT--------- 159 (445)
T ss_dssp EECSTTSCEEEEE--EETTEEEEEETTSCEEEEETTTCC-----------------------EEEECCCCS---------
T ss_pred ecccCCCcEEEEE--EcCCEEEEEECCCcEEEEECCCCc-----------------------EEEEEcCCC---------
Confidence 45788765 5555 568999999999999999998766 446678888
Q ss_pred ccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
..|.++.|. +.++++++.||.|++||+.+++....
T Consensus 160 ---~~v~~~~~~----~~~l~s~~~dg~i~vwd~~~~~~~~~-------------------------------------- 194 (445)
T 2ovr_B 160 ---GGVWSSQMR----DNIIISGSTDRTLKVWNAETGECIHT-------------------------------------- 194 (445)
T ss_dssp ---SCEEEEEEE----TTEEEEEETTSCEEEEETTTTEEEEE--------------------------------------
T ss_pred ---CCEEEEEec----CCEEEEEeCCCeEEEEECCcCcEEEE--------------------------------------
Confidence 889999994 34999999999999999988764321
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCcee
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 268 (514)
+.+|...|.+++|+ ++.+++| .|++|++||+++++...
T Consensus 195 ---------------------------------------~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~ 233 (445)
T 2ovr_B 195 ---------------------------------------LYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLH 233 (445)
T ss_dssp ---------------------------------------ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEE
T ss_pred ---------------------------------------ECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEE
Confidence 14677889999985 5678888 99999999998765443
Q ss_pred eeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEE
Q 010256 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (514)
Q Consensus 269 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (514)
.+.+|...|.+++| ++ .++++|+.||.|++||+++++.. .. +.+|...|.+++
T Consensus 234 --------~~~~~~~~v~~~~~--~~-~~l~~~~~dg~i~iwd~~~~~~~----~~------------~~~~~~~v~~~~ 286 (445)
T 2ovr_B 234 --------VLMGHVAAVRCVQY--DG-RRVVSGAYDFMVKVWDPETETCL----HT------------LQGHTNRVYSLQ 286 (445)
T ss_dssp --------EEECCSSCEEEEEE--CS-SCEEEEETTSCEEEEEGGGTEEE----EE------------ECCCSSCEEEEE
T ss_pred --------EEcCCcccEEEEEE--CC-CEEEEEcCCCEEEEEECCCCcEe----EE------------ecCCCCceEEEE
Confidence 35678999999999 55 78999999999999999887652 22 345667899999
Q ss_pred EecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEec
Q 010256 349 FARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (514)
Q Consensus 349 ~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 427 (514)
| ++.++++++ |+.|++||+++ ++.+..+..|... ..++.+++++|++|+.||.|++||+
T Consensus 287 ~--~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~-----------------v~~~~~~~~~l~~~~~dg~i~vwd~ 346 (445)
T 2ovr_B 287 F--DGIHVVSGSLDTSIRVWDVET-GNCIHTLTGHQSL-----------------TSGMELKDNILVSGNADSTVKIWDI 346 (445)
T ss_dssp E--CSSEEEEEETTSCEEEEETTT-CCEEEEECCCCSC-----------------EEEEEEETTEEEEEETTSCEEEEET
T ss_pred E--CCCEEEEEeCCCeEEEEECCC-CCEEEEEcCCccc-----------------EEEEEEeCCEEEEEeCCCeEEEEEC
Confidence 9 788999876 59999999997 8888888877654 2334446789999999999999999
Q ss_pred CCCceeeeeecC---CCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCcc-cc-CCcccccccceEEEEEcCCCCEEE
Q 010256 428 SEGSAESTTLEA---SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSAL-DA-NGNAFDFSMKLLHLAWHPSENSIA 502 (514)
Q Consensus 428 ~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~-~~-~~~~~~~~~~v~~~~~spd~~~l~ 502 (514)
.+++. ...+.. |..+|.++.++ ++++++++.||.|++++-...... .+ ......+.+.|.+++|+|++.+||
T Consensus 347 ~~~~~-~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la 423 (445)
T 2ovr_B 347 KTGQC-LQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCA 423 (445)
T ss_dssp TTCCE-EEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEE
T ss_pred CCCcE-EEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEE
Confidence 88754 356665 88899999995 579999999999999432211100 11 011125788999999999999999
Q ss_pred EEecCc-----EEEEe
Q 010256 503 CAASNS-----LYMYY 513 (514)
Q Consensus 503 ~~~~~~-----~~i~~ 513 (514)
+++.++ +.+|+
T Consensus 424 ~~~~dg~~~~~l~v~d 439 (445)
T 2ovr_B 424 VGSRNGTEETKLLVLD 439 (445)
T ss_dssp EECSSSSSCCEEEEEE
T ss_pred EcccCCCCccEEEEEE
Confidence 999776 77774
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-37 Score=280.16 Aligned_cols=258 Identities=15% Similarity=0.178 Sum_probs=196.1
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|++++|+|+|++||+|+.|++|+|||+.+++.. ....+.+|.
T Consensus 9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~---------------------~~~~l~gH~---------- 57 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI---------------------LIADLRGHE---------- 57 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE---------------------EEEEEECCS----------
T ss_pred cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE---------------------EEEEEcCCC----------
Confidence 3489999999999999999999999999999999765421 446788998
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|.+++|++..++.+|++++.|++|++||+++++.....
T Consensus 58 --~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~-------------------------------------- 97 (316)
T 3bg1_A 58 --GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSH-------------------------------------- 97 (316)
T ss_dssp --SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEE--------------------------------------
T ss_pred --ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEE--------------------------------------
Confidence 8899999965445779999999999999998765311100
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC--CCEEEEe-cCCeEEEEeccCCCce
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQS 267 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~~ 267 (514)
. +.+|...|.+++|+|+ +.+|++| .|++|++||++.....
T Consensus 98 ------------------------------------~-~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~ 140 (316)
T 3bg1_A 98 ------------------------------------E-HAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW 140 (316)
T ss_dssp ------------------------------------E-ECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE
T ss_pred ------------------------------------E-ccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc
Confidence 0 2578889999999998 7899999 9999999999854322
Q ss_pred eeeeccCCCcccccCCceEEEEEecCC----------------CcEEEEEecCCeEEEEEcCCCccccccccceeccCCC
Q 010256 268 FNIVDVKPANMEDLTEVITSAEFHPTH----------------CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~~v~~~p~~----------------~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 331 (514)
... ..+.+|...+.+++|+|+. ..+|++|+.|+.|++||++..... ...
T Consensus 141 ~~~-----~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~-~~~--------- 205 (316)
T 3bg1_A 141 EVK-----KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW-KEE--------- 205 (316)
T ss_dssp EEC-----CBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE-EEE---------
T ss_pred cee-----eeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcc-cee---------
Confidence 110 1456788899999999972 158999999999999999754210 001
Q ss_pred CccceeeccccceeEEEEecCC----CEEEEEe-CCeEEEEEccCCC---CceeeeeeccccccccccccccCCccceee
Q 010256 332 GTRSFFTEIIASISDIKFARNG----RHILSRD-YMTLKLWDINMDS---GPVATFQVHEHLRPKLCDLYENDSIFDKFE 403 (514)
Q Consensus 332 ~~~~~~~~~~~~i~~~~~s~~g----~~l~~~~-~~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 403 (514)
..+.+|...|.+++|+|++ .+|++++ |++|++||+.... .....+..|... |++
T Consensus 206 ---~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~---------------v~~ 267 (316)
T 3bg1_A 206 ---QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDV---------------VWH 267 (316)
T ss_dssp ---ECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSC---------------EEE
T ss_pred ---eecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCc---------------EEE
Confidence 1255677899999999986 7899876 5999999987511 112333444332 459
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCC
Q 010256 404 CCLSGDGGRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 404 ~~~s~~~~~l~s~~~dg~i~iwd~~~ 429 (514)
++|+|++++|++++.|+.|++|+...
T Consensus 268 v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 268 VSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp EEECTTTCCEEEEESSSCEEEEEECT
T ss_pred EEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 99999999999999999999999763
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-36 Score=288.78 Aligned_cols=321 Identities=12% Similarity=0.217 Sum_probs=245.2
Q ss_pred ccccccce-EEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccc
Q 010256 31 EVQEVDII-SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (514)
Q Consensus 31 ~~~h~~~V-~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (514)
..+|.+.| +++.+ ++++|++|+.||.|++||+.+++ ....+.+|.
T Consensus 117 l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~-----------------------~~~~~~~h~--------- 162 (464)
T 3v7d_B 117 LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK-----------------------FLLQLSGHD--------- 162 (464)
T ss_dssp EECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTE-----------------------EEEEECCCS---------
T ss_pred EcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCc-----------------------EEEEEeCCC---------
Confidence 45787774 67666 46799999999999999987665 456778898
Q ss_pred ccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeec--cCCCccc
Q 010256 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM--ANGGCGE 187 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~l~ 187 (514)
..|.+++|+ +++ ++++++.||+|++||+.+++.......+ .+.+. .+.++ ++++.+
T Consensus 163 ---~~V~~l~~~--~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h--------~~~v~-------~l~~~~~~~~~~l- 220 (464)
T 3v7d_B 163 ---GGVWALKYA--HGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGH--------NSTVR-------CLDIVEYKNIKYI- 220 (464)
T ss_dssp ---SCEEEEEEC--STT-EEEEEETTSCEEEEETTTTEEEEEECCC--------SSCEE-------EEEEEESSSCEEE-
T ss_pred ---cCEEEEEEc--CCC-EEEEEeCCCCEEEEECCCCcEEEEECCC--------CCccE-------EEEEecCCCCCEE-
Confidence 899999994 454 8999999999999999999876665543 23444 66676 566777
Q ss_pred cccCCCCCCcccCCCCCCcEEeceeecccccccccc----------------ccccccccCccCeEEEEECCCCCEEEEe
Q 010256 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAG----------------CRRIYAHAHDYHINSISNNSDGETFISA 251 (514)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~----------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 251 (514)
++++.|+.|++|| +.......... .......+|...|.++ ++++++++++
T Consensus 221 -----------~s~s~d~~i~vwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~ 286 (464)
T 3v7d_B 221 -----------VTGSRDNTLHVWK-LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSG 286 (464)
T ss_dssp -----------EEEETTSCEEEEE-CCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEE
T ss_pred -----------EEEcCCCcEEEee-CCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEE
Confidence 9999999999999 43322111000 0012236788888877 5778999999
Q ss_pred -cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCC
Q 010256 252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (514)
Q Consensus 252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 330 (514)
.|+.|++||+++.+... .+.+|...|.+++|+|++ +++++|+.||.|++||+++++.. ..
T Consensus 287 ~~d~~i~vwd~~~~~~~~--------~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~----~~------ 347 (464)
T 3v7d_B 287 SYDNTLIVWDVAQMKCLY--------ILSGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGELM----YT------ 347 (464)
T ss_dssp ETTSCEEEEETTTTEEEE--------EECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEEE----EE------
T ss_pred eCCCeEEEEECCCCcEEE--------EecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEE----EE------
Confidence 99999999998655443 456789999999999998 89999999999999999987752 22
Q ss_pred CCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCC
Q 010256 331 PGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (514)
Q Consensus 331 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 409 (514)
+.+|...|.+++|+ +.+|++++ |+.|++||+.. ........ +... +..++|+++
T Consensus 348 ------~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~-~~~~~~~~-~~~~---------------~~~~~~~~~ 402 (464)
T 3v7d_B 348 ------LQGHTALVGLLRLS--DKFLVSAAADGSIRGWDAND-YSRKFSYH-HTNL---------------SAITTFYVS 402 (464)
T ss_dssp ------ECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT-CCEEEEEE-CTTC---------------CCEEEEEEC
T ss_pred ------EeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCC-Cceeeeec-CCCC---------------ccEEEEEeC
Confidence 44566889999998 57888875 59999999986 44443332 2221 126899999
Q ss_pred CCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 410 GGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 410 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+++|++++ ||.|++||+.+++.....+..|...|.+++|+ +..++++++.|+.+.+
T Consensus 403 ~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i 458 (464)
T 3v7d_B 403 DNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFL 458 (464)
T ss_dssp SSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEE
T ss_pred CCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEE
Confidence 99999998 89999999999866544577899999999997 4456666677776665
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-35 Score=280.44 Aligned_cols=313 Identities=15% Similarity=0.205 Sum_probs=228.1
Q ss_pred ccccccceEEEEEcC-CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccc
Q 010256 31 EVQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~-~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (514)
...|.+.|++++|+| ++++||+|+.||.|++|++.+++........ .. .........+|.
T Consensus 39 ~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~~------~~~~~~~~~~~~--------- 99 (408)
T 4a11_B 39 ERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCK----AV------CSIGRDHPDVHR--------- 99 (408)
T ss_dssp CCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEEC----EE------EEECTTCTTCCS---------
T ss_pred eeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecc----cc------ccccccccccCC---------
Confidence 446999999999999 9999999999999999999877643110000 00 000000113465
Q ss_pred ccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
..|.+++|+|. ++.+|++++.|+.|++||+.+++......
T Consensus 100 ---~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------------------------------------ 139 (408)
T 4a11_B 100 ---YSVETVQWYPH-DTGMFTSSSFDKTLKVWDTNTLQTADVFN------------------------------------ 139 (408)
T ss_dssp ---SCEEEEEECTT-CTTCEEEEETTSEEEEEETTTTEEEEEEE------------------------------------
T ss_pred ---CcEEEEEEccC-CCcEEEEEeCCCeEEEeeCCCCccceecc------------------------------------
Confidence 88999999642 55689999999999999999876443322
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC---CCEEEEe-cCCeEEEEeccCCC
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD---GETFISA-DDLRINLWNLEISN 265 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~s~-~d~~i~iwd~~~~~ 265 (514)
+...+.++.+++. +.+++++ .|+.|++||+++++
T Consensus 140 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 177 (408)
T 4a11_B 140 ------------------------------------------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS 177 (408)
T ss_dssp ------------------------------------------CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC
T ss_pred ------------------------------------------CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc
Confidence 2345677788774 5589998 99999999998665
Q ss_pred ceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceecc---CCCCccceeecccc
Q 010256 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ---EAPGTRSFFTEIIA 342 (514)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 342 (514)
... .+..|...|.+++|+|++..+|++++.||.|++||++++... ...+..+ ..........+|..
T Consensus 178 ~~~--------~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 246 (408)
T 4a11_B 178 CSH--------ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGC---LITLDQHNGKKSQAVESANTAHNG 246 (408)
T ss_dssp CCE--------EECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCC---SEECCTTTTCSCCCTTTSSCSCSS
T ss_pred eee--------eecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcc---cccccccccccceeeccccccccC
Confidence 443 456789999999999999447999999999999999887643 2222221 11122333467889
Q ss_pred ceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCc
Q 010256 343 SISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL 421 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 421 (514)
.|.+++|+|++++|++++ ++.|++||+.+ ++....+..+..... ...+........+..+++++.|+.
T Consensus 247 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 315 (408)
T 4a11_B 247 KVNGLCFTSDGLHLLTVGTDNRMRLWNSSN-GENTLVNYGKVCNNS----------KKGLKFTVSCGCSSEFVFVPYGST 315 (408)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTT-CCBCCCCCCCCCCCC----------SSCCCCEECCSSSSCEEEEEETTE
T ss_pred ceeEEEEcCCCCEEEEecCCCeEEEEECCC-Cccceeccccccccc----------cccceeEEecCCCceEEEEecCCE
Confidence 999999999999999976 49999999997 555444433221110 000001222334556777788999
Q ss_pred EEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 422 FRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 422 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
|++||+.++. ....+.+|...|.+++|+|++++|++++.||.|++
T Consensus 316 i~v~d~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 360 (408)
T 4a11_B 316 IAVYTVYSGE-QITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILA 360 (408)
T ss_dssp EEEEETTTCC-EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred EEEEECcCCc-ceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEE
Confidence 9999999874 45788999999999999999999999999999999
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=277.09 Aligned_cols=304 Identities=14% Similarity=0.169 Sum_probs=227.6
Q ss_pred cccccceEEEEEcCC----CCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeec--cCCCcccc
Q 010256 32 VQEVDIISAIEFDKS----GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ--SHEPEFDY 105 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~----g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~~~ 105 (514)
.+|.+.|++++|+|+ ...+++++.++.|++|++.+++.. ..+..+. .|.
T Consensus 15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~--------------------~~~~~~~~~~~~----- 69 (366)
T 3k26_A 15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI--------------------RLLQSYVDADAD----- 69 (366)
T ss_dssp CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE--------------------EEEEEEECSCTT-----
T ss_pred cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE--------------------EeeeeccccCCC-----
Confidence 379999999999984 456666677779999999866532 0111111 133
Q ss_pred ccccccccceeEEEEeeCCC--CcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCC
Q 010256 106 LKSLEIEEKINKIRWCQSAN--SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANG 183 (514)
Q Consensus 106 ~~~~~~~~~v~~i~~~~~~~--~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 183 (514)
..|.+++|+|..+ +.+|++++.||.|++||+.+++....
T Consensus 70 -------~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~-------------------------------- 110 (366)
T 3k26_A 70 -------ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKH-------------------------------- 110 (366)
T ss_dssp -------CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEE--------------------------------
T ss_pred -------CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeee--------------------------------
Confidence 7799999987644 67999999999999999987653221
Q ss_pred CccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC-CCCEEEEe-cCCeEEEEec
Q 010256 184 GCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNL 261 (514)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~ 261 (514)
+.+|...|.+++|+| ++++|+++ .|+.|++||+
T Consensus 111 ---------------------------------------------~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~ 145 (366)
T 3k26_A 111 ---------------------------------------------YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 145 (366)
T ss_dssp ---------------------------------------------EESCCSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred ---------------------------------------------ecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEe
Confidence 246778999999999 89999999 8999999999
Q ss_pred cCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccccc--ceec----------cC
Q 010256 262 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK--LFEE----------QE 329 (514)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~--~~~~----------~~ 329 (514)
++++....+ ..+..|...|.+++|+|++ .+|++++.||.|++||+++++....... .+.. ..
T Consensus 146 ~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (366)
T 3k26_A 146 QTDTLVAIF-----GGVEGHRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKI 219 (366)
T ss_dssp TTTEEEEEE-----CSTTSCSSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEE
T ss_pred ecCeEEEEe-----cccccccCceeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceee
Confidence 866544322 1236789999999999998 8999999999999999998764311000 0000 00
Q ss_pred CCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCc-------------eeeeeecccccccccccccc
Q 010256 330 APGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGP-------------VATFQVHEHLRPKLCDLYEN 395 (514)
Q Consensus 330 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~ 395 (514)
.........+|...|.+++|+ ++++++++ ++.|++||+...... +..+..|...
T Consensus 220 ~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 287 (366)
T 3k26_A 220 HFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCD---------- 287 (366)
T ss_dssp CCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCC----------
T ss_pred ccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCc----------
Confidence 000112234488899999999 77888876 499999999873221 3333333322
Q ss_pred CCccceeeEEEcCC--CCEEEEEeCCCcEEEEecCCCcee---eeeecCC--CcceeEEEECCCCCceeecCCCCeEEE
Q 010256 396 DSIFDKFECCLSGD--GGRVATGSYSNLFRVFGCSEGSAE---STTLEAS--KNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 396 ~~~~~v~~~~~s~~--~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~--~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
|.+++|+|+ +++|++|+.||.|++||+.+++.. ...+.+| ..+|..++|+|++++|++++.||.|++
T Consensus 288 -----v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 361 (366)
T 3k26_A 288 -----IWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWR 361 (366)
T ss_dssp -----SSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred -----EEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEE
Confidence 348999999 999999999999999999987432 2467777 799999999999999999999999999
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-36 Score=285.69 Aligned_cols=330 Identities=10% Similarity=0.088 Sum_probs=230.5
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|++++|+| ++|++|+.||.|+||++.+++.. ........+.+|.
T Consensus 12 ~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~-----------------~~~~~~~~~~~h~---------- 62 (397)
T 1sq9_A 12 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNE-----------------NPKDKSYSHFVHK---------- 62 (397)
T ss_dssp SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTC-----------------CGGGGEEEEECCT----------
T ss_pred hhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccc-----------------cCCCcceEEecCC----------
Confidence 348999999999998 79999999999999999876521 1122345667887
Q ss_pred cccceeEEEEeeC--CCC---cEEEEeeCCCeEEEEEcCccEE-----EEEeeccCCCccccCCcceecccccCCceeec
Q 010256 111 IEEKINKIRWCQS--ANS---ALYLLSTNDKTIKLWKVQEKKV-----KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM 180 (514)
Q Consensus 111 ~~~~v~~i~~~~~--~~~---~~l~s~~~d~~i~iw~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 180 (514)
..|.+++|+|. .++ .+|++++.|+.|++|++.+++. ......+... ...+.+. .++|+
T Consensus 63 --~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~-------~~~~~ 130 (397)
T 1sq9_A 63 --SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSD---MKKHSFW-------ALKWG 130 (397)
T ss_dssp --TCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTT---GGGSCEE-------EEEEE
T ss_pred --CcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccc---cCCCcEE-------EEEEe
Confidence 88999999754 126 7999999999999999987763 2222222000 0013344 88999
Q ss_pred ----cCCCc-cccccCCCCCCcccCCCCCCcEEeceeecc------cccccccccccccc------ccCccCeEEEEECC
Q 010256 181 ----ANGGC-GERNFGCASNDSSFPPGGVSSLRLPVVVTS------QETNLVAGCRRIYA------HAHDYHINSISNNS 243 (514)
Q Consensus 181 ----~~~~~-l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~------~~~~~~~~~~~~~~------~~h~~~v~~~~~~~ 243 (514)
|+++. + ++++.++.|++|| +.. ..... ..+...+. ..|...|.+++|+|
T Consensus 131 ~~~~~~~~~~l------------~~~~~dg~i~iwd-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 196 (397)
T 1sq9_A 131 ASNDRLLSHRL------------VATDVKGTTYIWK-FHPFADESNSLTLN-WSPTLELQGTVESPMTPSQFATSVDISE 196 (397)
T ss_dssp CCC----CEEE------------EEEETTSCEEEEE-EESSSSHHHHTTTC-CCCEEEEEEEECCSSSSCCCCCEEEECT
T ss_pred eccCCCCceEE------------EEEeCCCcEEEEe-CCccccccccceee-ccCcceeeeeeccccCCCCCceEEEECC
Confidence 99998 8 9999999999999 443 11111 00000211 45888999999999
Q ss_pred CCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccc---c---CCceEEEEEecCCCcEEEEEecC---CeEEEEEcC
Q 010256 244 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMED---L---TEVITSAEFHPTHCNMLAYSSSK---GSIRLIDMR 313 (514)
Q Consensus 244 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~---~~~i~~v~~~p~~~~~l~~~~~d---g~i~~wd~~ 313 (514)
++ +|+++ .|+.|++||+++.+... .+.. | ...|.+++|+|++ .+|++++.| +.|++||++
T Consensus 197 ~~-~l~~~~~dg~i~i~d~~~~~~~~--------~~~~~~~h~~~~~~i~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~~ 266 (397)
T 1sq9_A 197 RG-LIATGFNNGTVQISELSTLRPLY--------NFESQHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETE 266 (397)
T ss_dssp TS-EEEEECTTSEEEEEETTTTEEEE--------EEECCC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETT
T ss_pred Cc-eEEEEeCCCcEEEEECCCCceeE--------EEeccccccccCCccceEEECCCC-CEEEEEecCCCCceEEEEECC
Confidence 99 99999 89999999998655443 2344 7 8899999999998 899999999 999999999
Q ss_pred CCccccccccceeccCCCCc-cceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeee------ecccc
Q 010256 314 QSALCDTHSKLFEEQEAPGT-RSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQ------VHEHL 385 (514)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~------~~~~~ 385 (514)
+++.. ..+.....+.. ......|...|.+++|+|++++|++++. +.|++||+.. ++.+..+. .|...
T Consensus 267 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~ 341 (397)
T 1sq9_A 267 FGERI----GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT-KERITTLNMHCDDIEIEED 341 (397)
T ss_dssp TCCEE----EEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-TEEEEEEECCGGGCSSGGG
T ss_pred CCccc----ceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC-CceeEEEecccCcccchhh
Confidence 87652 23322100000 0000116789999999999999999864 9999999997 78888887 44100
Q ss_pred ccccccccccCCccceeeEEEcCCC----------CEEEEEeCCCcEEEEecCCC
Q 010256 386 RPKLCDLYENDSIFDKFECCLSGDG----------GRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 386 ~~~~~~~~~~~~~~~v~~~~~s~~~----------~~l~s~~~dg~i~iwd~~~~ 430 (514)
...-........-..|.+++|+|++ ++|++++.||.|++|++.++
T Consensus 342 ~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 342 ILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp CCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred hhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 0000000000001235599999998 79999999999999999875
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-36 Score=278.43 Aligned_cols=288 Identities=12% Similarity=0.179 Sum_probs=221.0
Q ss_pred cccccceEEEEEcCCCCe-EEEecC---CCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccc
Q 010256 32 VQEVDIISAIEFDKSGDH-LATGDR---GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~-l~tg~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (514)
.+|.+.|++++|+|++.. +++|+. ||.|+||++.+++.. .....+|.
T Consensus 15 ~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~----------------------~~~~~~~~------- 65 (357)
T 3i2n_A 15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK----------------------LLREIEKA------- 65 (357)
T ss_dssp EECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE----------------------EEEEEEES-------
T ss_pred cCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc----------------------ceeeeccc-------
Confidence 469999999999999965 556665 999999999876531 11122555
Q ss_pred ccccccceeEEEEeeCC-CCcEEEEeeCCCeEEEEEcCccE-EEEEeeccCCCccccCCcceecccccCCceeeccCCCc
Q 010256 108 SLEIEEKINKIRWCQSA-NSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (514)
Q Consensus 108 ~~~~~~~v~~i~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 185 (514)
..|.+++|+|.. ++.+|++++.||.|++||+.+++ ...
T Consensus 66 -----~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----------------------------------- 105 (357)
T 3i2n_A 66 -----KPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVY----------------------------------- 105 (357)
T ss_dssp -----SCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSE-----------------------------------
T ss_pred -----CcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEE-----------------------------------
Confidence 789999996532 26799999999999999998653 100
Q ss_pred cccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEE------ECCCCCEEEEe-cCCeEEE
Q 010256 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSIS------NNSDGETFISA-DDLRINL 258 (514)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~------~~~~~~~l~s~-~d~~i~i 258 (514)
. +.+|...|.+++ |+|++++|+++ .|+.|++
T Consensus 106 -----------------------------------------~-~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~v 143 (357)
T 3i2n_A 106 -----------------------------------------S-VKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKV 143 (357)
T ss_dssp -----------------------------------------E-ECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEE
T ss_pred -----------------------------------------E-EEecccceEEEeeccccccCCCccEEEEEeCCCeEEE
Confidence 0 256778888884 57899999999 9999999
Q ss_pred EeccCCCceeeeeccCCCcccccCCceEEEE----EecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCcc
Q 010256 259 WNLEISNQSFNIVDVKPANMEDLTEVITSAE----FHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 334 (514)
Q Consensus 259 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~----~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 334 (514)
||+++.+.....+.. ....+...+.+++ |+|++ ++|++++.||.|++||+++++..
T Consensus 144 wd~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~---------------- 203 (357)
T 3i2n_A 144 WDPRQKDDPVANMEP---VQGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMALR---------------- 203 (357)
T ss_dssp ECTTSCSSCSEEECC---CTTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTTTEEE----------------
T ss_pred EeCCCCCCcceeccc---cCCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEEECccCcee----------------
Confidence 999976633332110 0111244788888 67888 89999999999999999987642
Q ss_pred ceeeccccceeEEEEec---CCCEEEEEeC-CeEEEEEccCCCCceeeee-----eccccccccccccccCCccceeeEE
Q 010256 335 SFFTEIIASISDIKFAR---NGRHILSRDY-MTLKLWDINMDSGPVATFQ-----VHEHLRPKLCDLYENDSIFDKFECC 405 (514)
Q Consensus 335 ~~~~~~~~~i~~~~~s~---~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~ 405 (514)
....|...|.+++|+| ++.++++++. +.|++||++. ++++..+. .|... |.+++
T Consensus 204 -~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~---------------v~~~~ 266 (357)
T 3i2n_A 204 -WETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT-QHPTKGFASVSEKAHKST---------------VWQVR 266 (357)
T ss_dssp -EEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE-EETTTEEEEEEEECCSSC---------------EEEEE
T ss_pred -eecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC-CCcccceeeeccCCCcCC---------------EEEEE
Confidence 1233557899999999 8999999864 9999999986 55555444 44433 45999
Q ss_pred EcCCCC-EEEEEeCCCcEEEEecCCCc------------------eeeeeecCCCcceeEEEECCCCCcee-ecCCCCeE
Q 010256 406 LSGDGG-RVATGSYSNLFRVFGCSEGS------------------AESTTLEASKNPMRRQVQTPSRPSRP-LGSLSGVV 465 (514)
Q Consensus 406 ~s~~~~-~l~s~~~dg~i~iwd~~~~~------------------~~~~~~~~~~~~v~~~~~~~~~~~l~-s~s~d~~v 465 (514)
|+|+++ +|++++.||.|++||+..+. .....+.+|..+|.+++|+|++++|+ +++.|+.|
T Consensus 267 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i 346 (357)
T 3i2n_A 267 HLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTV 346 (357)
T ss_dssp EETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEE
T ss_pred ECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcE
Confidence 999999 89999999999999998643 23467889999999999999999998 89999999
Q ss_pred EE
Q 010256 466 RR 467 (514)
Q Consensus 466 ~i 467 (514)
++
T Consensus 347 ~i 348 (357)
T 3i2n_A 347 RV 348 (357)
T ss_dssp EE
T ss_pred EE
Confidence 99
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-37 Score=291.15 Aligned_cols=323 Identities=8% Similarity=-0.005 Sum_probs=235.7
Q ss_pred ccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccc
Q 010256 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (514)
.-.+.|.+++|||||+++|+++.|++|+ |....+ .+.+|.
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~--------------------------~l~gh~------------ 52 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK--------------------------DINCNS------------ 52 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS--------------------------CCSSBG------------
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccc--------------------------eecCCC------------
Confidence 4468999999999999999999999999 643332 346777
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
..|.+++|+| +| .++.+.+|+.+... ...... ...|. .++|+|+|+.+
T Consensus 53 ~~v~~V~FsP--dg-------~~~~~~~~~~~~~~---~~~~~~-------~~~V~-------~vawSPdG~~L------ 100 (588)
T 2j04_A 53 KNLFHVKEFP--LE-------FENKLDFELAQQNG---LLNSQP-------VCYPR-------VCKPSPIDDWM------ 100 (588)
T ss_dssp GGTEEEEEEC--CC-------CCCTTTTSCCCSSC---SSTTSC-------SCCEE-------EEEECSSSSCE------
T ss_pred ccEEEEEECC--CC-------CcceEEEEeCCCce---EeecCC-------CCcEE-------EEEECCCCCEE------
Confidence 8899999954 54 45555555543222 111110 23444 88999999999
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCcc-----CeEEEEECCCCCEEEEe-cCCeEEEEeccCCCc
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDY-----HINSISNNSDGETFISA-DDLRINLWNLEISNQ 266 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~ 266 (514)
++++.+|.+++|+ . +. +...+ . |.. .|.+++|+|||++|++| .||+|++||+.++..
T Consensus 101 ------As~s~dg~V~iwd-~---~~-----~l~~l-~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l 163 (588)
T 2j04_A 101 ------AVLSNNGNVSVFK-D---NK-----MLTNL-D-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSE 163 (588)
T ss_dssp ------EEEETTSCEEEEE-T---TE-----EEEEC-C-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTT
T ss_pred ------EEEeCCCcEEEEe-C---Cc-----eeeec-c-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcc
Confidence 9999999999998 2 11 22222 3 444 59999999999999999 999999999986542
Q ss_pred ------eeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecc
Q 010256 267 ------SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 340 (514)
Q Consensus 267 ------~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (514)
....+. ....+|...|.+++|+|+| +++++.|+.|++||+..+... ...+.+. .+|
T Consensus 164 ~~~~~i~l~ti~---~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~-~~~~tL~-----------~~h 225 (588)
T 2j04_A 164 NTPEFYFESSIR---LSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQ-PVSRMIQ-----------NAS 225 (588)
T ss_dssp TCCCCEEEEEEE---CSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSC-CCEEEEE-----------CCC
T ss_pred ccccceeeeeee---cccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccc-cceeeec-----------ccc
Confidence 111110 1236688999999999986 788999999999999876531 0011121 245
Q ss_pred ccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEE--cCCCCEEEEEeC
Q 010256 341 IASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL--SGDGGRVATGSY 418 (514)
Q Consensus 341 ~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~s~~~ 418 (514)
...|.+++|+ |+.|+++++++|++||+.. ++......+|... +.+++| +||+..|++++.
T Consensus 226 ~~~V~svaFs--g~~LASa~~~tIkLWd~~~-~~~~~~~~gh~~~---------------V~~va~~~s~d~~~La~a~e 287 (588)
T 2j04_A 226 RRKITDLKIV--DYKVVLTCPGYVHKIDLKN-YSISSLKTGSLEN---------------FHIIPLNHEKESTILLMSNK 287 (588)
T ss_dssp SSCCCCEEEE--TTEEEEECSSEEEEEETTT-TEEEEEECSCCSC---------------CCEEEETTCSSCEEEEECSS
T ss_pred cCcEEEEEEE--CCEEEEEeCCeEEEEECCC-CeEEEEEcCCCce---------------EEEEEeeeCCCCCEEEEEcC
Confidence 5789999999 6899998889999999985 4432333266654 338999 999999999999
Q ss_pred CCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCC
Q 010256 419 SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSE 498 (514)
Q Consensus 419 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~ 498 (514)
||. ++|... .+.++|++..+++. |+++++ |+.....+. .++....|.+++|||||
T Consensus 288 dG~-klw~~d-----------------~~~~spd~~l~a~~--d~~v~l---W~~~g~~l~--~~~~~~~I~~va~SPdG 342 (588)
T 2j04_A 288 TSY-KVLLED-----------------ELHVTADNIIAPYL--EKKFKK---WSTIWNEFN--NYETTLVIHGISLSPDG 342 (588)
T ss_dssp CEE-EEEESS-----------------SEEEECCCSSHHHH--HHHHHH---TTTTTTSSS--SSCCEEEEEEEEECTTS
T ss_pred CCC-EEEeec-----------------cEEECCCceEEEEc--CCEEEE---EECCCCcee--eeccceEEEEEEECCCC
Confidence 999 999977 15599999998886 888888 333211111 23346679999999999
Q ss_pred CEEEEEe
Q 010256 499 NSIACAA 505 (514)
Q Consensus 499 ~~l~~~~ 505 (514)
+.+|+++
T Consensus 343 ~~lA~~~ 349 (588)
T 2j04_A 343 YSIAIVY 349 (588)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999886
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-37 Score=288.05 Aligned_cols=301 Identities=11% Similarity=0.129 Sum_probs=215.7
Q ss_pred ccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccc
Q 010256 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (514)
.|.+.|++++|+|+|++||+|+.||.|+||++.++.. .....+.+|.
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~---------------------~~~~~~~~h~------------ 55 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW---------------------KHARTFSDHD------------ 55 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE---------------------EECCCBCCCS------------
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce---------------------EEEEEEecCC------------
Confidence 3567899999999999999999999999999986621 1345677887
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccE-EEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
..|.+++| ++++++|++++.|+.|++||+.+++ ....
T Consensus 56 ~~v~~~~~--s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~---------------------------------------- 93 (377)
T 3dwl_C 56 KIVTCVDW--APKSNRIVTCSQDRNAYVYEKRPDGTWKQT---------------------------------------- 93 (377)
T ss_dssp SCEEEEEE--CTTTCCEEEEETTSSEEEC------CCCCE----------------------------------------
T ss_pred ceEEEEEE--eCCCCEEEEEeCCCeEEEEEcCCCCceeee----------------------------------------
Confidence 88999999 5667799999999999999998764 0000
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeee
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 270 (514)
.. +.+|...|.+++|+|++++|+++ .|+.|++||+++.+.....
T Consensus 94 ----------------------------------~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 138 (377)
T 3dwl_C 94 ----------------------------------LV-LLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVS 138 (377)
T ss_dssp ----------------------------------EE-CCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCC
T ss_pred ----------------------------------eE-ecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceee
Confidence 00 25688899999999999999999 9999999999866531000
Q ss_pred eccCCCcccc-cCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCC--CccceeeccccceeEE
Q 010256 271 VDVKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP--GTRSFFTEIIASISDI 347 (514)
Q Consensus 271 ~~~~~~~~~~-~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~ 347 (514)
..+.. |...|.+++|+|++ ++|++++.|+.|++||++.................+ .....+ +|...|.++
T Consensus 139 -----~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~ 211 (377)
T 3dwl_C 139 -----KHLKRPLRSTILSLDWHPNN-VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAV 211 (377)
T ss_dssp -----EEECSSCCSCEEEEEECTTS-SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEE
T ss_pred -----eEeecccCCCeEEEEEcCCC-CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEE
Confidence 13445 89999999999998 899999999999999997654321111000000000 011223 788899999
Q ss_pred EEecCCCEEEEEeC-CeEEEEEccCCCCc----eeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcE
Q 010256 348 KFARNGRHILSRDY-MTLKLWDINMDSGP----VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 422 (514)
Q Consensus 348 ~~s~~g~~l~~~~~-~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 422 (514)
+|+|++++|++++. +.|++||+.. ++. +..+..|... |.+++|+|++++|++++.|+.+
T Consensus 212 ~~sp~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~---------------v~~~~~s~~~~~l~~~~~~~~~ 275 (377)
T 3dwl_C 212 GFSPSGNALAYAGHDSSVTIAYPSA-PEQPPRALITVKLSQLP---------------LRSLLWANESAIVAAGYNYSPI 275 (377)
T ss_dssp EECTTSSCEEEEETTTEEC-CEECS-TTSCEEECCCEECSSSC---------------EEEEEEEETTEEEEEESSSSEE
T ss_pred EECCCCCEEEEEeCCCcEEEEECCC-CCCcceeeEeecCCCCc---------------eEEEEEcCCCCEEEEEcCCcEE
Confidence 99999999999865 9999999997 665 6677777654 4499999999999998876655
Q ss_pred EEEecCCCce-ee--------------------------------------------------eeecCCCcceeEEEECC
Q 010256 423 RVFGCSEGSA-ES--------------------------------------------------TTLEASKNPMRRQVQTP 451 (514)
Q Consensus 423 ~iwd~~~~~~-~~--------------------------------------------------~~~~~~~~~v~~~~~~~ 451 (514)
+|+...... .. .....|...|.++.+.+
T Consensus 276 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~ 354 (377)
T 3dwl_C 276 -LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYA 354 (377)
T ss_dssp -EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEE
T ss_pred -EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccC
Confidence 676542210 00 01113899999999765
Q ss_pred CCC----ceeecCCCCeEEE
Q 010256 452 SRP----SRPLGSLSGVVRR 467 (514)
Q Consensus 452 ~~~----~l~s~s~d~~v~i 467 (514)
... .++|++.||.|++
T Consensus 355 ~~~~~~~~~~s~g~Dg~i~i 374 (377)
T 3dwl_C 355 GTPGNITAFTSSGTDGRVVL 374 (377)
T ss_dssp EETTEEEEEEEEETTSEEEE
T ss_pred CCCCceEEEEeecCCCcEEE
Confidence 543 5999999999998
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=276.18 Aligned_cols=277 Identities=11% Similarity=0.195 Sum_probs=223.6
Q ss_pred ceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccccee
Q 010256 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (514)
Q Consensus 37 ~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 116 (514)
.++.|+||++ ++||+|. |++|+|||..+++.. ....+.+|. ..|+
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~---------------------~~~~~~~~~------------~~V~ 151 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDIL---------------------QLLQMEQPG------------EYIS 151 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEE---------------------EEEECCSTT------------CCEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEE---------------------EEEEecCCC------------CcEE
Confidence 5788999976 5888875 999999999887742 222345565 7899
Q ss_pred EEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCC
Q 010256 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND 196 (514)
Q Consensus 117 ~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 196 (514)
+|+| +++|.+|++|+.||.|++||+.+++....
T Consensus 152 sv~f--spdg~~lasgs~Dg~v~iWd~~~~~~~~~--------------------------------------------- 184 (420)
T 4gga_A 152 SVAW--IKEGNYLAVGTSSAEVQLWDVQQQKRLRN--------------------------------------------- 184 (420)
T ss_dssp EEEE--CTTSSEEEEEETTSCEEEEETTTTEEEEE---------------------------------------------
T ss_pred EEEE--CCCCCEEEEEECCCeEEEEEcCCCcEEEE---------------------------------------------
Confidence 9999 56888999999999999999998764322
Q ss_pred cccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCC
Q 010256 197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP 275 (514)
Q Consensus 197 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~ 275 (514)
..+|...+.++++ ++..|++| .|+.+++||.........
T Consensus 185 --------------------------------~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~------ 224 (420)
T 4gga_A 185 --------------------------------MTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVA------ 224 (420)
T ss_dssp --------------------------------ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEE------
T ss_pred --------------------------------EeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeE------
Confidence 1456677877776 46789999 999999999986555433
Q ss_pred CcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCC-
Q 010256 276 ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR- 354 (514)
Q Consensus 276 ~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~- 354 (514)
.+.+|...+..+.++|++ .++++++.|+.+++||..+++....... ....|...|.+++|+|++.
T Consensus 225 -~~~~h~~~~~~~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~~~~~------------~~~~~~~~V~~~~~~p~~~~ 290 (420)
T 4gga_A 225 -TLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQ------------TFTQHQGAVKAVAWCPWQSN 290 (420)
T ss_dssp -EEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCCSSCSCCSE------------EECCCSSCEEEEEECTTCTT
T ss_pred -EecccccceeeeeecCCC-CeeeeeeccccceEEeeccccccceeee------------eecccCCceeeeeeCCCccc
Confidence 467799999999999999 8999999999999999988764322122 2345668899999999765
Q ss_pred EEEEE--e-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe--CCCcEEEEecCC
Q 010256 355 HILSR--D-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS--YSNLFRVFGCSE 429 (514)
Q Consensus 355 ~l~~~--~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--~dg~i~iwd~~~ 429 (514)
+++++ + |++|++||+.+ ++++..+..+.. +.++.|+|+++.|++++ .|+.|+|||+.+
T Consensus 291 ~la~~~gs~D~~I~iwd~~t-~~~~~~~~~~~~----------------v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~ 353 (420)
T 4gga_A 291 VLATGGGTSDRHIRIWNVCS-GACLSAVDAHSQ----------------VCSILWSPHYKELISGHGFAQNQLVIWKYPT 353 (420)
T ss_dssp EEEEEECTTTCEEEEEETTT-TEEEEEEECSSC----------------EEEEEEETTTTEEEEEECTTTCCEEEEETTT
T ss_pred EEEEEeecCCCEEEEEeCCc-cccceeeccccc----------------eeeeeecCCCCeEEEEEecCCCEEEEEECCC
Confidence 44443 3 59999999997 777777766543 33899999999988765 789999999998
Q ss_pred CceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 430 GSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 430 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
++. ..++.+|..+|.+++|+|++++|+|||.|++|++
T Consensus 354 ~~~-v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvri 390 (420)
T 4gga_A 354 MAK-VAELKGHTSRVLSLTMSPDGATVASAAADETLRL 390 (420)
T ss_dssp CCE-EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEE
T ss_pred CcE-EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEE
Confidence 754 5789999999999999999999999999999999
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=284.49 Aligned_cols=312 Identities=13% Similarity=0.149 Sum_probs=228.4
Q ss_pred cccccceEEEEEcC-CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 32 VQEVDIISAIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 32 ~~h~~~V~~~~~s~-~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
.+|.+.|++++|+| ++++||+|+.||.|+|||+.+..... ..+....+ +|.
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~-----------------~~~~~~~~-~h~---------- 111 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE-----------------VYSSSLTY-DCS---------- 111 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC-----------------CCSCSEEE-ECS----------
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc-----------------ccceeeec-cCC----------
Confidence 47899999999999 99999999999999999987622100 00011112 365
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcC---ccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQ---EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 187 (514)
..|.+++|+ +++.+|++++.||.|++||+. .++.......+ .+. .+.++|
T Consensus 112 --~~v~~~~~~--~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~----------~i~-------~~~~~~------ 164 (437)
T 3gre_A 112 --STVTQITMI--PNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE----------CIR-------KINLKN------ 164 (437)
T ss_dssp --SCEEEEEEC--TTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE----------EEE-------EEEGGG------
T ss_pred --CCEEEEEEe--CCCCEEEEEeCCCEEEEEEeccccCCceeeccccc----------eeE-------EEEccC------
Confidence 889999995 577799999999999999995 33322221111 000 111111
Q ss_pred cccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEE--ECCCCCEEEEe-cCCeEEEEeccCC
Q 010256 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSIS--NNSDGETFISA-DDLRINLWNLEIS 264 (514)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~--~~~~~~~l~s~-~d~~i~iwd~~~~ 264 (514)
.++...+.++. +++++.+|+++ .|+.|++||+++.
T Consensus 165 ------------------------------------------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 202 (437)
T 3gre_A 165 ------------------------------------------FGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL 202 (437)
T ss_dssp ------------------------------------------GSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC
T ss_pred ------------------------------------------cccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Confidence 11456677777 67899999999 9999999999876
Q ss_pred CceeeeeccCCCcccc--cCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecccc
Q 010256 265 NQSFNIVDVKPANMED--LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (514)
Q Consensus 265 ~~~~~~~~~~~~~~~~--~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (514)
+.... +.. |...|++++|+|++ .+|++|+.||.|++||+++++.. ..+. ..|..
T Consensus 203 ~~~~~--------~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~----~~~~-----------~~~~~ 258 (437)
T 3gre_A 203 ERLQI--------IENSPRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNVLI----RSWS-----------FGDHA 258 (437)
T ss_dssp CEEEE--------EECCGGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEEE----EEEB-----------CTTCE
T ss_pred eeeEE--------EccCCCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCccEE----EEEe-----------cCCCC
Confidence 65443 333 78899999999998 89999999999999999987652 2222 13446
Q ss_pred ceeEEEEe----cCCCEEEEEeC-CeEEEEEccCCCCceeeeeecccccccccccc-----------ccCCccceeeEEE
Q 010256 343 SISDIKFA----RNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLY-----------ENDSIFDKFECCL 406 (514)
Q Consensus 343 ~i~~~~~s----~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~v~~~~~ 406 (514)
.|.+++|+ |++++|++++. +.|++||+++ ++.+..+..|........-.. .......|.+++|
T Consensus 259 ~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~ 337 (437)
T 3gre_A 259 PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK-GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISV 337 (437)
T ss_dssp EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTT-TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEE
T ss_pred ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCC-CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEE
Confidence 89999665 46889999865 9999999997 888888887754332111100 0012234669999
Q ss_pred cCCCCEEEEEeCCCcEEEEecCCCceeeeeecC-------------------------------------CCcceeEEEE
Q 010256 407 SGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA-------------------------------------SKNPMRRQVQ 449 (514)
Q Consensus 407 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------------------------------~~~~v~~~~~ 449 (514)
+ ++++|++|+.||.|++||+.+++.. ..+.+ |...|.++++
T Consensus 338 ~-~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~ 415 (437)
T 3gre_A 338 S-NDKILLTDEATSSIVMFSLNELSSS-KAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSIST 415 (437)
T ss_dssp E-TTEEEEEEGGGTEEEEEETTCGGGC-EEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEE
T ss_pred C-CceEEEecCCCCeEEEEECCCcccc-eEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEee
Confidence 9 8899999999999999999987543 34443 8899999999
Q ss_pred CCC--CCceeecCCCCeEEE
Q 010256 450 TPS--RPSRPLGSLSGVVRR 467 (514)
Q Consensus 450 ~~~--~~~l~s~s~d~~v~i 467 (514)
+++ +.+|++|+.||.|++
T Consensus 416 ~~~~~~~~l~s~~~dG~I~i 435 (437)
T 3gre_A 416 CEVDETPLLVACDNSGLIGI 435 (437)
T ss_dssp EESSSSEEEEEEETTSCEEE
T ss_pred eccCCceEEEEEcCCceEEE
Confidence 988 889999999999998
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-35 Score=280.00 Aligned_cols=291 Identities=14% Similarity=0.191 Sum_probs=229.6
Q ss_pred cccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccc
Q 010256 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (514)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (514)
|.+.|++++|+|++++|++|+.||.|++|+ .+++ ....+.+|. .
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~-----------------------~~~~~~~~~------------~ 150 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGA-----------------------LLNVLNFHR------------A 150 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSC-----------------------EEEEECCCC------------S
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCC-----------------------eeeeccCCC------------c
Confidence 688999999999999999999999999999 3332 345677787 8
Q ss_pred ceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCC
Q 010256 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (514)
Q Consensus 114 ~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (514)
.|.+++| ++++.+|++++.|+.|++||+.+++.......+....
T Consensus 151 ~v~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---------------------------------- 194 (425)
T 1r5m_A 151 PIVSVKW--NKDGTHIISMDVENVTILWNVISGTVMQHFELKETGG---------------------------------- 194 (425)
T ss_dssp CEEEEEE--CTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--------------------------------------
T ss_pred cEEEEEE--CCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCc----------------------------------
Confidence 8999999 5677899999999999999999987665544331100
Q ss_pred CCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeec
Q 010256 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (514)
Q Consensus 194 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~ 272 (514)
..+.. .. .......+.+++|+|++. ++++ .++.|++||+++.+...
T Consensus 195 -----------~~~~~----------------~~-~~~~~~~~~~~~~~~~~~-~~~~~~~g~i~~~d~~~~~~~~---- 241 (425)
T 1r5m_A 195 -----------SSINA----------------EN-HSGDGSLGVDVEWVDDDK-FVIPGPKGAIFVYQITEKTPTG---- 241 (425)
T ss_dssp ---------------------------------------CCCBSCCEEEETTE-EEEECGGGCEEEEETTCSSCSE----
T ss_pred -----------cceee----------------cc-ccCCcceeeEEEEcCCCE-EEEEcCCCeEEEEEcCCCceee----
Confidence 00000 00 022234477888998865 5555 99999999998665433
Q ss_pred cCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecC
Q 010256 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (514)
Q Consensus 273 ~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 352 (514)
.+..|...|.+++|+|++ .+|++++.|+.|++||+++++.. .. +.+|...|.+++|+|+
T Consensus 242 ----~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~----~~------------~~~~~~~i~~~~~~~~ 300 (425)
T 1r5m_A 242 ----KLIGHHGPISVLEFNDTN-KLLLSASDDGTLRIWHGGNGNSQ----NC------------FYGHSQSIVSASWVGD 300 (425)
T ss_dssp ----EECCCSSCEEEEEEETTT-TEEEEEETTSCEEEECSSSBSCS----EE------------ECCCSSCEEEEEEETT
T ss_pred ----eeccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCccc----eE------------ecCCCccEEEEEECCC
Confidence 345688999999999999 89999999999999999887642 22 3445678999999999
Q ss_pred CCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCc
Q 010256 353 GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 431 (514)
Q Consensus 353 g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 431 (514)
+ ++++++ ++.|++||+.+ ++.+..+..|... +.+++|+|++++|++++.||.|++||+.++.
T Consensus 301 ~-~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~---------------i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 301 D-KVISCSMDGSVRLWSLKQ-NTLLALSIVDGVP---------------IFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp T-EEEEEETTSEEEEEETTT-TEEEEEEECTTCC---------------EEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred C-EEEEEeCCCcEEEEECCC-CcEeEecccCCcc---------------EEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 9 777765 59999999987 7777777776544 4489999999999999999999999998764
Q ss_pred -------------------eeeeeecCCCc--ceeEEEECCCCCceeecCCCCeEEE
Q 010256 432 -------------------AESTTLEASKN--PMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 432 -------------------~~~~~~~~~~~--~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.....+.+|.. .|..+.|+|++++|++++.||.|++
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 420 (425)
T 1r5m_A 364 SKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSV 420 (425)
T ss_dssp C--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEE
T ss_pred cceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEE
Confidence 04578888876 9999999999999999999999998
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=271.80 Aligned_cols=263 Identities=13% Similarity=0.172 Sum_probs=204.4
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|++++|+|++++||+|+.||.|+||++..... .....+.+|.
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~---------------------~~~~~~~~h~---------- 55 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH---------------------KLIDTLTGHE---------- 55 (379)
T ss_dssp EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE---------------------EEEEEECCCS----------
T ss_pred ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc---------------------eeeeEecCCC----------
Confidence 458999999999999999999999999999999874322 2556788888
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|++++|++..++.+|++++.||.|++||+.+++......
T Consensus 56 --~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~------------------------------------- 96 (379)
T 3jrp_A 56 --GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV------------------------------------- 96 (379)
T ss_dssp --SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEE-------------------------------------
T ss_pred --CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeee-------------------------------------
Confidence 88999999665457899999999999999998875322111
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC--CCEEEEe-cCCeEEEEeccCCCce
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQS 267 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~~ 267 (514)
...|...|.+++|+|+ +.+|+++ .|+.|++||++.....
T Consensus 97 --------------------------------------~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~ 138 (379)
T 3jrp_A 97 --------------------------------------HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT 138 (379)
T ss_dssp --------------------------------------ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC
T ss_pred --------------------------------------ecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce
Confidence 2457788999999999 9999999 9999999999866433
Q ss_pred eeeeccCCCcccccCCceEEEEEec-------------CCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCcc
Q 010256 268 FNIVDVKPANMEDLTEVITSAEFHP-------------THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 334 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~~v~~~p-------------~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 334 (514)
... .+..|...|.+++|+| ++ .+|++++.|+.|++||++++.......
T Consensus 139 ~~~------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~------------ 199 (379)
T 3jrp_A 139 SPI------IIDAHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLE------------ 199 (379)
T ss_dssp CEE------EEECCTTCEEEEEECCCC----------CTT-CEEEEEETTSCEEEEEEETTTTEEEEE------------
T ss_pred eeE------EecCCCCceEEEEEcCccccccccccCCCCC-CEEEEEeCCCeEEEEEecCCCcceeeE------------
Confidence 222 4567889999999999 56 899999999999999998765321111
Q ss_pred ceeeccccceeEEEEecC---CCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCC
Q 010256 335 SFFTEIIASISDIKFARN---GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 410 (514)
Q Consensus 335 ~~~~~~~~~i~~~~~s~~---g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 410 (514)
..+.+|...|.+++|+|+ +++|++++ |+.|++||+.. +............ .....+.+++|+|++
T Consensus 200 ~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~----------~~~~~v~~~~~s~~g 268 (379)
T 3jrp_A 200 STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN-EQGPWKKTLLKEE----------KFPDVLWRASWSLSG 268 (379)
T ss_dssp EEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS-TTSCCEEEESSSS----------CCSSCEEEEEECSSS
T ss_pred EEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC-CCccceeeeeccc----------cCCCcEEEEEEcCCC
Confidence 124567789999999999 89999976 59999999987 3311111110000 011125589999999
Q ss_pred CEEEEEeCCCcEEEEecCCCc
Q 010256 411 GRVATGSYSNLFRVFGCSEGS 431 (514)
Q Consensus 411 ~~l~s~~~dg~i~iwd~~~~~ 431 (514)
++|++++.||.|++|++....
T Consensus 269 ~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 269 NVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp CCEEEEESSSSEEEEEEEETT
T ss_pred CEEEEecCCCcEEEEeCCCCC
Confidence 999999999999999998543
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=265.40 Aligned_cols=298 Identities=15% Similarity=0.168 Sum_probs=232.5
Q ss_pred ceeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceec
Q 010256 90 FRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG 169 (514)
Q Consensus 90 ~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 169 (514)
......+.+|. ..|++++| ++++.+|++++.||.|++||+.+++....
T Consensus 22 ~~~~~~l~~h~------------~~v~~~~~--s~~~~~l~~~~~dg~i~vwd~~~~~~~~~------------------ 69 (369)
T 3zwl_B 22 HMKAIKLTGHE------------RPLTQVKY--NKEGDLLFSCSKDSSASVWYSLNGERLGT------------------ 69 (369)
T ss_dssp SEEEEEEECCS------------SCEEEEEE--CTTSCEEEEEESSSCEEEEETTTCCEEEE------------------
T ss_pred ccccEEEEEee------------ceEEEEEE--cCCCCEEEEEeCCCEEEEEeCCCchhhhh------------------
Confidence 33445678888 89999999 56788999999999999999987653221
Q ss_pred ccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEE
Q 010256 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 249 (514)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 249 (514)
+.+|...|.+++|+|++++|+
T Consensus 70 -----------------------------------------------------------~~~h~~~v~~~~~~~~~~~l~ 90 (369)
T 3zwl_B 70 -----------------------------------------------------------LDGHTGTIWSIDVDCFTKYCV 90 (369)
T ss_dssp -----------------------------------------------------------ECCCSSCEEEEEECTTSSEEE
T ss_pred -----------------------------------------------------------hhhcCCcEEEEEEcCCCCEEE
Confidence 246778999999999999999
Q ss_pred Ee-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC-----CeEEEEEcCCCcccccccc
Q 010256 250 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-----GSIRLIDMRQSALCDTHSK 323 (514)
Q Consensus 250 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~ 323 (514)
++ .|+.|++||+++++.... +. +...+.+++|+|++ .++++++.+ +.|++||++......
T Consensus 91 s~~~dg~i~iwd~~~~~~~~~--------~~-~~~~v~~~~~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~---- 156 (369)
T 3zwl_B 91 TGSADYSIKLWDVSNGQCVAT--------WK-SPVPVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSATH---- 156 (369)
T ss_dssp EEETTTEEEEEETTTCCEEEE--------EE-CSSCEEEEEECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTTC----
T ss_pred EEeCCCeEEEEECCCCcEEEE--------ee-cCCCeEEEEEccCC-CEEEEecCCccCCCCEEEEEEecCCccce----
Confidence 99 999999999987655432 22 67889999999999 899999998 999999998765421
Q ss_pred ceeccCCCCccceeecccc--ceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccc
Q 010256 324 LFEEQEAPGTRSFFTEIIA--SISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFD 400 (514)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (514)
.+.... ......+..|.. .+.+++|+|++++|++++. +.|++||++...+.+..+..|...
T Consensus 157 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--------------- 220 (369)
T 3zwl_B 157 ELTKVS-EEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKS--------------- 220 (369)
T ss_dssp CEEEEC-SSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSC---------------
T ss_pred eecccc-cceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCc---------------
Confidence 111111 111223444555 8999999999999999865 999999998645667777776654
Q ss_pred eeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCC--------------eEE
Q 010256 401 KFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSG--------------VVR 466 (514)
Q Consensus 401 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~--------------~v~ 466 (514)
|.+++|+|++++|++++.||.|++||+.++... ..+. +..++..+.++|+++++++++.++ .++
T Consensus 221 v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~-~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 298 (369)
T 3zwl_B 221 ISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL-KKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEAR 298 (369)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-EEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEE
T ss_pred eeEEEECCCCCEEEEecCCceEEEEECCCCcee-eeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeE
Confidence 448999999999999999999999999987543 4444 778899999999999999999988 566
Q ss_pred EeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 467 RVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 467 i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
+.+.... ........|...|++++|+|++++|++++ ++.+++|.
T Consensus 299 ~~d~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 343 (369)
T 3zwl_B 299 FYHKIFE---EEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHH 343 (369)
T ss_dssp EEETTTC---CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EEecCCC---cchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 6322111 12222335889999999999999999888 55688885
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=269.28 Aligned_cols=287 Identities=10% Similarity=0.039 Sum_probs=227.1
Q ss_pred ccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccc
Q 010256 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (514)
+|.+.|++++|+|++++|++|+.||.|+||++.+++.. .....+.+|.
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~--------------------~~~~~~~~~~------------ 56 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN--------------------VDLLQSLRYK------------ 56 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE--------------------EEEEEEEECS------------
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc--------------------ccceeeeecC------------
Confidence 79999999999999999999999999999999866511 1123344676
Q ss_pred cceeEEEEeeCCCCc-EEEEeeCCCeEEEEEc-CccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 113 EKINKIRWCQSANSA-LYLLSTNDKTIKLWKV-QEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~-~l~s~~~d~~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|.+++|+| ++. +|++++.||.|++||+ .+++...
T Consensus 57 ~~v~~~~~~~--~~~~~l~~~~~dg~i~~wd~~~~~~~~~---------------------------------------- 94 (342)
T 1yfq_A 57 HPLLCCNFID--NTDLQIYVGTVQGEILKVDLIGSPSFQA---------------------------------------- 94 (342)
T ss_dssp SCEEEEEEEE--SSSEEEEEEETTSCEEEECSSSSSSEEE----------------------------------------
T ss_pred CceEEEEECC--CCCcEEEEEcCCCeEEEEEeccCCceEe----------------------------------------
Confidence 8899999964 578 8999999999999999 7654210
Q ss_pred CCCCCCcccCCCCCCcEEeceeecccccccccccccccccc--CccCeEEEEECCCCCEEEEe-cCCeEEEEeccC----
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHA--HDYHINSISNNSDGETFISA-DDLRINLWNLEI---- 263 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~---- 263 (514)
+.+ |...|.+++|+| +..|+++ .|+.|++||+++
T Consensus 95 --------------------------------------~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~ 135 (342)
T 1yfq_A 95 --------------------------------------LTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDG 135 (342)
T ss_dssp --------------------------------------CBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTB
T ss_pred --------------------------------------ccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccc
Confidence 134 778999999999 9999999 999999999985
Q ss_pred -----CCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCC-CccccccccceeccCCCCcccee
Q 010256 264 -----SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ-SALCDTHSKLFEEQEAPGTRSFF 337 (514)
Q Consensus 264 -----~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~ 337 (514)
.+... .+. |...+.+++|+|++ +++++.|+.|++||+++ +.... . ...
T Consensus 136 ~~~~~~~~~~--------~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~---~-----------~~~ 189 (342)
T 1yfq_A 136 VIAVKNLNSN--------NTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNG---T-----------IEE 189 (342)
T ss_dssp CEEEEESCSS--------SSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCC---E-----------EEE
T ss_pred cccccCCeee--------EEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccc---e-----------eee
Confidence 32221 233 78899999999874 89999999999999987 54210 0 112
Q ss_pred eccccceeEEEEec-CCCEEEEEeC-CeEEEEEccCC-----CCceeeeeeccccccccccccccCCccceeeEEEcCCC
Q 010256 338 TEIIASISDIKFAR-NGRHILSRDY-MTLKLWDINMD-----SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 410 (514)
Q Consensus 338 ~~~~~~i~~~~~s~-~g~~l~~~~~-~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 410 (514)
..|...+.+++|+| +++++++++. +.|++|+++.. .+....+..|..... .......|.+++|+|++
T Consensus 190 ~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~~~s~~~ 263 (342)
T 1yfq_A 190 SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK------DTNLAYPVNSIEFSPRH 263 (342)
T ss_dssp CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTT------CCSSCCCEEEEEECTTT
T ss_pred cCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccccc------ccccceeEEEEEEcCCC
Confidence 23457899999999 9999999865 99999999873 277777877754210 00111235699999999
Q ss_pred CEEEEEeCCCcEEEEecCCCceeeeeecCC-CcceeEEEECCCCCceeecCCCCe-EEE
Q 010256 411 GRVATGSYSNLFRVFGCSEGSAESTTLEAS-KNPMRRQVQTPSRPSRPLGSLSGV-VRR 467 (514)
Q Consensus 411 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~s~d~~-v~i 467 (514)
++|++++.||.|++||+.+++ ....+.+| ..+|.+++ |++++|++++.|++ .+.
T Consensus 264 ~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~ 319 (342)
T 1yfq_A 264 KFLYTAGSDGIISCWNLQTRK-KIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTN 319 (342)
T ss_dssp CCEEEEETTSCEEEEETTTTE-EEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHC
T ss_pred CEEEEecCCceEEEEcCccHh-HhhhhhcccCCCceEec--CCCCeEEEEecCCccccc
Confidence 999999999999999999874 45778888 99999999 99999999999998 444
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-34 Score=263.79 Aligned_cols=284 Identities=16% Similarity=0.242 Sum_probs=220.7
Q ss_pred ceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccccee
Q 010256 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (514)
Q Consensus 37 ~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 116 (514)
..++|+||+++ +||+| .|++|+|||+.+++.. ....+.+|. ..|+
T Consensus 27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~---------------------~~~~~~~~~------------~~V~ 71 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDIL---------------------QLLQMEQPG------------EYIS 71 (318)
T ss_dssp TCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEE---------------------EEEECCSTT------------CCEE
T ss_pred cceEEEECCCC-EEEEE-eCCEEEEEECCCCCEE---------------------EEEEecCCC------------CeEE
Confidence 46889999986 78876 4999999999887742 122344565 7899
Q ss_pred EEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCC
Q 010256 117 KIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND 196 (514)
Q Consensus 117 ~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 196 (514)
+++| ++++++|++|+.||+|++|++++++.......+... ...+++++..+
T Consensus 72 ~v~~--~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~-----------------~~~~~~~~~~l---------- 122 (318)
T 4ggc_A 72 SVAW--IKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR-----------------VGSLSWNSYIL---------- 122 (318)
T ss_dssp EEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC-----------------EEEEEEETTEE----------
T ss_pred EEEE--CCCCCEEEEEECCCcEEEeecCCceeEEEecCccce-----------------EEEeecCCCEE----------
Confidence 9999 567889999999999999999999877766554211 33566677776
Q ss_pred cccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCC
Q 010256 197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP 275 (514)
Q Consensus 197 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~ 275 (514)
++++.++.+++|+ ..... .....+.+|...+..+.+++++++|+++ .|++|++||+++++......
T Consensus 123 --~s~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---- 189 (318)
T 4ggc_A 123 --SSGSRSGHIHHHD-VRVAE------HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL---- 189 (318)
T ss_dssp --EEEETTSEEEEEE-TTSSS------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCS----
T ss_pred --EEEecCCceEeee-cCCCc------eeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccce----
Confidence 8999999999888 22211 1112247899999999999999999999 99999999998655332211
Q ss_pred CcccccCCceEEEEEecCCCcEE--EEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCC
Q 010256 276 ANMEDLTEVITSAEFHPTHCNML--AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (514)
Q Consensus 276 ~~~~~~~~~i~~v~~~p~~~~~l--~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 353 (514)
.....+...|.++.++|++..++ ++++.++.|++||.+...... ...+...+..+.|+|++
T Consensus 190 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~-----------------~~~~~~~v~~~~~~~~~ 252 (318)
T 4ggc_A 190 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS-----------------AVDAHSQVCSILWSPHY 252 (318)
T ss_dssp EEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEE-----------------EEECSSCEEEEEEETTT
T ss_pred eeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccc-----------------cccceeeeeeeeecccc
Confidence 13455778899999999885655 356678999999998765421 12233679999999999
Q ss_pred CEEEEEe---CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 354 RHILSRD---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 354 ~~l~~~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
..+++++ ++.|++||+++ ++++.++.+|... |++++|+|||++|++|+.||.|+|||+.+.
T Consensus 253 ~~~~~~sg~~d~~i~iwd~~~-~~~~~~l~gH~~~---------------V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 253 KELISGHGFAQNQLVIWKYPT-MAKVAELKGHTSR---------------VLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp TEEEEEECTTTCCEEEEETTT-CCEEEEECCCSSC---------------EEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred cceEEEEEcCCCEEEEEECCC-CcEEEEEcCCCCC---------------EEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 9888743 59999999997 8999999998765 459999999999999999999999999754
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-34 Score=264.71 Aligned_cols=290 Identities=16% Similarity=0.178 Sum_probs=223.6
Q ss_pred eeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEE---EEEeeccCCCccccCCcce
Q 010256 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKV---KKVFDWNVHPEKAAGNGPI 167 (514)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~---~~~~~~~~~~~~~~~~~~v 167 (514)
.+..+++||. +.|++|+|+|. ++++|++|+.|++|++||+.+.+. .....+..+ ...|
T Consensus 29 ~l~~tL~GH~------------~~V~~v~~sp~-~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h------~~~V 89 (340)
T 4aow_A 29 TLRGTLKGHN------------GWVTQIATTPQ-FPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGH------SHFV 89 (340)
T ss_dssp EEEEEECCCS------------SCEEEEEECTT-CTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCC------SSCE
T ss_pred EEEEEECCcc------------CCEEEEEEeCC-CCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCC------CCCE
Confidence 3567899999 99999999653 256999999999999999976531 111122211 2344
Q ss_pred ecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCE
Q 010256 168 FGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET 247 (514)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 247 (514)
. .+.|+|+++.+ ++++.|+.|++|+ ...... ... ...+...+..+.+++++++
T Consensus 90 ~-------~~~~s~dg~~l------------~s~~~d~~i~~~~-~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~ 142 (340)
T 4aow_A 90 S-------DVVISSDGQFA------------LSGSWDGTLRLWD-LTTGTT------TRR-FVGHTKDVLSVAFSSDNRQ 142 (340)
T ss_dssp E-------EEEECTTSSEE------------EEEETTSEEEEEE-TTTTEE------EEE-EECCSSCEEEEEECTTSSC
T ss_pred E-------EEEECCCCCEE------------EEEcccccceEEe-ecccce------eee-ecCCCCceeEEEEeecCcc
Confidence 4 88999999998 9999999999999 322211 111 2566678889999999999
Q ss_pred EEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCC-cEEEEEecCCeEEEEEcCCCccccccccce
Q 010256 248 FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC-NMLAYSSSKGSIRLIDMRQSALCDTHSKLF 325 (514)
Q Consensus 248 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 325 (514)
|+++ .|+.+++||+........ ...+|...+..++|++++. .++++++.|+.|++||+++++.. .
T Consensus 143 l~s~s~d~~~~~~d~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~----~-- 209 (340)
T 4aow_A 143 IVSGSRDKTIKLWNTLGVCKYTV-------QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK----T-- 209 (340)
T ss_dssp EEEEETTSCEEEECTTSCEEEEE-------CSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEE----E--
T ss_pred ceeecCCCeEEEEEeCCCceEEE-------EeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCcee----e--
Confidence 9999 999999999875443321 4567889999999998752 47889999999999999987652 2
Q ss_pred eccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeE
Q 010256 326 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC 404 (514)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 404 (514)
.+.+|.+.|++++|+|++++|++|+. +.|++||++. .+++..+..+.. +.++
T Consensus 210 ----------~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~-~~~~~~~~~~~~----------------v~~~ 262 (340)
T 4aow_A 210 ----------NHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE-GKHLYTLDGGDI----------------INAL 262 (340)
T ss_dssp ----------EECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTT-TEEEEEEECSSC----------------EEEE
T ss_pred ----------EecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEecc-CceeeeecCCce----------------EEee
Confidence 24556689999999999999999764 9999999997 777777665532 3489
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCCceee--------eeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 405 CLSGDGGRVATGSYSNLFRVFGCSEGSAES--------TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 405 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+|+|++.++ +++.|+.|++||++++.... ....+|...|.+++|+|++++|++|+.||.|++
T Consensus 263 ~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~i 332 (340)
T 4aow_A 263 CFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRV 332 (340)
T ss_dssp EECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 999988765 55678999999998763321 223478899999999999999999999999999
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-35 Score=275.87 Aligned_cols=284 Identities=12% Similarity=0.225 Sum_probs=214.8
Q ss_pred ceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeecc-CCCccccccccccccce
Q 010256 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQS-HEPEFDYLKSLEIEEKI 115 (514)
Q Consensus 37 ~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~v 115 (514)
.+.+++|++ ..+++++.||.|++|++.+++.. ..+.. |. ..|
T Consensus 95 ~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~-----------------------~~~~~~~~------------~~v 137 (401)
T 4aez_A 95 YLNLLDWSN--LNVVAVALERNVYVWNADSGSVS-----------------------ALAETDES------------TYV 137 (401)
T ss_dssp TCBCEEECT--TSEEEEEETTEEEEEETTTCCEE-----------------------EEEECCTT------------CCE
T ss_pred eEEEEeecC--CCEEEEECCCeEEEeeCCCCcEe-----------------------EeeecCCC------------CCE
Confidence 355566664 56888889999999999877632 22332 55 789
Q ss_pred eEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCC
Q 010256 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (514)
Q Consensus 116 ~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (514)
.+++| ++++.+|++++.||.|++||+.+++.......+ .+.+. .+.| +++.+
T Consensus 138 ~~v~~--s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--------~~~v~-------~~~~--~~~~l--------- 189 (401)
T 4aez_A 138 ASVKW--SHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGH--------QARVG-------CLSW--NRHVL--------- 189 (401)
T ss_dssp EEEEE--CTTSSEEEEEETTSCEEEEETTTCCEEEEECCC--------SSCEE-------EEEE--ETTEE---------
T ss_pred EEEEE--CCCCCEEEEECCCCeEEEEECcCCeEEEEecCC--------CCceE-------EEEE--CCCEE---------
Confidence 99999 557889999999999999999998766655433 23333 5556 55666
Q ss_pred CcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccC
Q 010256 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 274 (514)
Q Consensus 196 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~ 274 (514)
++++.++.|++|| +.... ..... +.+|...|.+++|+|++++|+++ .|+.|++||+++.....
T Consensus 190 ---~~~~~dg~i~i~d-~~~~~-----~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~------ 253 (401)
T 4aez_A 190 ---SSGSRSGAIHHHD-VRIAN-----HQIGT-LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKF------ 253 (401)
T ss_dssp ---EEEETTSEEEEEE-TTSSS-----CEEEE-EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEE------
T ss_pred ---EEEcCCCCEEEEe-cccCc-----ceeeE-EcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccE------
Confidence 9999999999999 33211 11222 37899999999999999999999 89999999998655443
Q ss_pred CCcccccCCceEEEEEecCCCcEEEEEe--cCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecC
Q 010256 275 PANMEDLTEVITSAEFHPTHCNMLAYSS--SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (514)
Q Consensus 275 ~~~~~~~~~~i~~v~~~p~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 352 (514)
.+..|...|.+++|+|++..++++++ .|+.|++||+++++.. ..+. +...|.+++|+|+
T Consensus 254 --~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~----~~~~-------------~~~~v~~~~~s~~ 314 (401)
T 4aez_A 254 --TKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV----NTVD-------------AGSQVTSLIWSPH 314 (401)
T ss_dssp --EECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE----EEEE-------------CSSCEEEEEECSS
T ss_pred --EecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE----EEEe-------------CCCcEEEEEECCC
Confidence 34668899999999998867888876 7999999999987652 2222 2357999999999
Q ss_pred CCEEEE--E-eCCeEEEEEccCCCCceee--eeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEec
Q 010256 353 GRHILS--R-DYMTLKLWDINMDSGPVAT--FQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (514)
Q Consensus 353 g~~l~~--~-~~~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 427 (514)
++++++ | .++.|++||+.. +..... +..|... |.+++|+|++++|++++.||.|++|++
T Consensus 315 ~~~l~~~~g~~dg~i~v~~~~~-~~~~~~~~~~~h~~~---------------v~~~~~s~dg~~l~s~~~dg~i~iw~~ 378 (401)
T 4aez_A 315 SKEIMSTHGFPDNNLSIWSYSS-SGLTKQVDIPAHDTR---------------VLYSALSPDGRILSTAASDENLKFWRV 378 (401)
T ss_dssp SSEEEEEECTTTCEEEEEEEET-TEEEEEEEEECCSSC---------------CCEEEECTTSSEEEEECTTSEEEEEEC
T ss_pred CCeEEEEeecCCCcEEEEecCC-ccceeEEEecCCCCC---------------EEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 999998 4 259999999986 444433 4455443 348999999999999999999999999
Q ss_pred CCCceeeee
Q 010256 428 SEGSAESTT 436 (514)
Q Consensus 428 ~~~~~~~~~ 436 (514)
.+++.....
T Consensus 379 ~~~~~~~~~ 387 (401)
T 4aez_A 379 YDGDHVKRP 387 (401)
T ss_dssp CC-------
T ss_pred CCCcccccc
Confidence 987554333
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-34 Score=263.09 Aligned_cols=276 Identities=16% Similarity=0.179 Sum_probs=222.4
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|++++| |++++|++|+.||.|++||+.+++ ....+..|.
T Consensus 14 l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~-----------------------~~~~~~~~~---------- 59 (313)
T 3odt_A 14 LKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW-----------------------LGTVVYTGQ---------- 59 (313)
T ss_dssp ECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSE-----------------------EEEEEEECS----------
T ss_pred hhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE-----------------------EEEEeecCC----------
Confidence 4589999999999 999999999999999999997655 335566776
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|.+++|+ +++.++++++.|+.|++|++..... ++
T Consensus 60 --~~v~~~~~~--~~~~~l~~~~~dg~i~~~~~~~~~~----------------------------------~~------ 95 (313)
T 3odt_A 60 --GFLNSVCYD--SEKELLLFGGKDTMINGVPLFATSG----------------------------------ED------ 95 (313)
T ss_dssp --SCEEEEEEE--TTTTEEEEEETTSCEEEEETTCCTT----------------------------------SC------
T ss_pred --ccEEEEEEC--CCCCEEEEecCCCeEEEEEeeecCC----------------------------------CC------
Confidence 889999995 5778999999999999999865310 00
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
.... +.+|...|.+++| +++.++++ .|+.|++||. .....
T Consensus 96 ---------------------------------~~~~-~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~--~~~~~- 136 (313)
T 3odt_A 96 ---------------------------------PLYT-LIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE--GSLVY- 136 (313)
T ss_dssp ---------------------------------C-CE-ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET--TEEEE-
T ss_pred ---------------------------------cccc-hhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC--CcEEE-
Confidence 0001 2578889999999 57789998 9999999992 23222
Q ss_pred eeccCCCcccccCCceEEEEEec-CCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (514)
.+..|...+.++.|+| ++ .++++++.|+.|++||.... ...+.. .|...+.+++
T Consensus 137 -------~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~------~~~~~~-----------~~~~~i~~~~ 191 (313)
T 3odt_A 137 -------NLQAHNASVWDAKVVSFSE-NKFLTASADKTIKLWQNDKV------IKTFSG-----------IHNDVVRHLA 191 (313)
T ss_dssp -------EEECCSSCEEEEEEEETTT-TEEEEEETTSCEEEEETTEE------EEEECS-----------SCSSCEEEEE
T ss_pred -------ecccCCCceeEEEEccCCC-CEEEEEECCCCEEEEecCce------EEEEec-----------cCcccEEEEE
Confidence 3566899999999998 66 89999999999999994321 122221 1557899999
Q ss_pred EecCCCEEEEE-eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEec
Q 010256 349 FARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (514)
Q Consensus 349 ~s~~g~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 427 (514)
|+|++. ++++ .++.|++||+++ ++++..+..|... +.+++|+|++ .|++++.||.|++||+
T Consensus 192 ~~~~~~-~~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~---------------i~~~~~~~~~-~l~~~~~dg~v~iwd~ 253 (313)
T 3odt_A 192 VVDDGH-FISCSNDGLIKLVDMHT-GDVLRTYEGHESF---------------VYCIKLLPNG-DIVSCGEDRTVRIWSK 253 (313)
T ss_dssp EEETTE-EEEEETTSEEEEEETTT-CCEEEEEECCSSC---------------EEEEEECTTS-CEEEEETTSEEEEECT
T ss_pred EcCCCe-EEEccCCCeEEEEECCc-hhhhhhhhcCCce---------------EEEEEEecCC-CEEEEecCCEEEEEEC
Confidence 999998 5555 569999999997 8888888877654 4499999999 5889999999999999
Q ss_pred CCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEe
Q 010256 428 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRV 468 (514)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~ 468 (514)
.+++ ....+..|..++.+++|+|+++ +++++.|+.|+++
T Consensus 254 ~~~~-~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw 292 (313)
T 3odt_A 254 ENGS-LKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIF 292 (313)
T ss_dssp TTCC-EEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEE
T ss_pred CCCc-eeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEE
Confidence 9874 4478889999999999999998 5678999999993
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-35 Score=278.85 Aligned_cols=281 Identities=14% Similarity=0.206 Sum_probs=201.2
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
..|++|+|+|. ++.+|++|+.||.|+|||+.+++.....
T Consensus 120 ~~V~~l~~~P~-~~~~lasGs~dg~i~lWd~~~~~~~~~~---------------------------------------- 158 (435)
T 4e54_B 120 RRATSLAWHPT-HPSTVAVGSKGGDIMLWNFGIKDKPTFI---------------------------------------- 158 (435)
T ss_dssp SCEEEEEECSS-CTTCEEEEETTSCEEEECSSCCSCCEEE----------------------------------------
T ss_pred CCEEEEEEeCC-CCCEEEEEeCCCEEEEEECCCCCceeEE----------------------------------------
Confidence 78999999764 3468999999999999998765311110
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC-CCCEEEEe-cCCeEEEEeccCCCceeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 270 (514)
...+|.+.|++++|+| ++++|++| .|++|++||++..... .+
T Consensus 159 -----------------------------------~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~-~~ 202 (435)
T 4e54_B 159 -----------------------------------KGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILR-VF 202 (435)
T ss_dssp -----------------------------------CCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEE-EE
T ss_pred -----------------------------------EccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCcee-EE
Confidence 0257899999999998 68899999 9999999999843322 11
Q ss_pred eccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEe
Q 010256 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (514)
Q Consensus 271 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 350 (514)
. ....+...+.+++|+|++ .+|++|+.||.|++||++... +.. +.+|...|.+++|+
T Consensus 203 ~-----~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~~~~-----~~~------------~~~h~~~v~~v~~~ 259 (435)
T 4e54_B 203 A-----SSDTINIWFCSLDVSASS-RMVVTGDNVGNVILLNMDGKE-----LWN------------LRMHKKKVTHVALN 259 (435)
T ss_dssp E-----CCSSCSCCCCCEEEETTT-TEEEEECSSSBEEEEESSSCB-----CCC------------SBCCSSCEEEEEEC
T ss_pred e-----ccCCCCccEEEEEECCCC-CEEEEEeCCCcEeeeccCcce-----eEE------------EecccceEEeeeec
Confidence 1 223345667899999999 899999999999999987533 222 45567899999999
Q ss_pred cCCC-EEEEEe-CCeEEEEEccCCCCceeee---eeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEE
Q 010256 351 RNGR-HILSRD-YMTLKLWDINMDSGPVATF---QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 425 (514)
Q Consensus 351 ~~g~-~l~~~~-~~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 425 (514)
|++. ++++++ |+.|+|||++. .+....+ ..|... |.+++|+|+|++|++++.||.|+||
T Consensus 260 p~~~~~~~s~s~d~~v~iwd~~~-~~~~~~~~~~~~h~~~---------------v~~~~~spdg~~l~s~~~D~~i~iw 323 (435)
T 4e54_B 260 PCCDWFLATASVDQTVKIWDLRQ-VRGKASFLYSLPHRHP---------------VNAACFSPDGARLLTTDQKSEIRVY 323 (435)
T ss_dssp TTCSSEEEEEETTSBCCEEETTT-CCSSSCCSBCCBCSSC---------------EEECCBCTTSSEEEEEESSSCEEEE
T ss_pred CCCceEEEEecCcceeeEEeccc-ccccceEEEeeecccc---------------ccceeECCCCCeeEEEcCCCEEEEE
Confidence 9887 566665 59999999986 4433322 334332 4589999999999999999999999
Q ss_pred ecCCCceeeeeecCCCc------ceeEEEECCCCCceeec-----------C-CCCeEEEeeCCCCCccccCCc-ccccc
Q 010256 426 GCSEGSAESTTLEASKN------PMRRQVQTPSRPSRPLG-----------S-LSGVVRRVKGADNSALDANGN-AFDFS 486 (514)
Q Consensus 426 d~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~l~s~-----------s-~d~~v~i~~~~~~~~~~~~~~-~~~~~ 486 (514)
|+.++... ..+..|.. .+....++|++.+++++ + .++.|++++...-. .... ...|.
T Consensus 324 d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~---~~~~l~~~~~ 399 (435)
T 4e54_B 324 SASQWDCP-LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGK---MMCQLYDPES 399 (435)
T ss_dssp ESSSSSSE-EEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCC---EEEEECCSSC
T ss_pred ECCCCccc-eEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCc---EEEEEeCCCC
Confidence 99987544 33333321 12233445544444433 2 34578884332211 1111 12467
Q ss_pred cceEEE-EEcCCCCEEEEEecCcEEEEe
Q 010256 487 MKLLHL-AWHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 487 ~~v~~~-~~spd~~~l~~~~~~~~~i~~ 513 (514)
..|.++ +|||+|++||+|+++.++||+
T Consensus 400 ~~v~s~~~fspdg~~lasg~d~~i~iW~ 427 (435)
T 4e54_B 400 SGISSLNEFNPMGDTLASAMGYHILIWS 427 (435)
T ss_dssp CCCCCEEEECTTSSCEEEECSSEEEECC
T ss_pred CcEEEEEEECCCCCEEEEEcCCcEEEEE
Confidence 788887 799999999999999999997
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-34 Score=267.50 Aligned_cols=291 Identities=11% Similarity=0.139 Sum_probs=218.2
Q ss_pred cceeeeeeccCCCccccccccccccceeEEEEeeCCCC-cEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcce
Q 010256 89 EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANS-ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPI 167 (514)
Q Consensus 89 ~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v 167 (514)
.+.....+.+|. ..|++++|+ +++ .+|++++.|+.|++||+.+++......
T Consensus 62 ~~~~~~~~~~h~------------~~v~~~~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------- 113 (383)
T 3ei3_B 62 SYKLHRTASPFD------------RRVTSLEWH--PTHPTTVAVGSKGGDIILWDYDVQNKTSFIQ-------------- 113 (383)
T ss_dssp TCEEEEEECCCS------------SCEEEEEEC--SSCTTEEEEEEBTSCEEEEETTSTTCEEEEC--------------
T ss_pred ccceEEeccCCC------------CCEEEEEEC--CCCCCEEEEEcCCCeEEEEeCCCcccceeee--------------
Confidence 344566778888 889999995 555 799999999999999998654221110
Q ss_pred ecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC-CCC
Q 010256 168 FGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGE 246 (514)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~ 246 (514)
..+|...|.+++|+| +++
T Consensus 114 -------------------------------------------------------------~~~h~~~v~~~~~~~~~~~ 132 (383)
T 3ei3_B 114 -------------------------------------------------------------GMGPGDAITGMKFNQFNTN 132 (383)
T ss_dssp -------------------------------------------------------------CCSTTCBEEEEEEETTEEE
T ss_pred -------------------------------------------------------------cCCcCCceeEEEeCCCCCC
Confidence 146888999999999 688
Q ss_pred EEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccce
Q 010256 247 TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF 325 (514)
Q Consensus 247 ~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 325 (514)
+|+++ .|+.|++||++. .....+. ....+...|.+++|+|++ .+|++|+.|+.|++||++. +. ..
T Consensus 133 ~l~s~~~d~~i~iwd~~~-~~~~~~~-----~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~-~~----~~-- 198 (383)
T 3ei3_B 133 QLFVSSIRGATTLRDFSG-SVIQVFA-----KTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLLLGLDG-HE----IF-- 198 (383)
T ss_dssp EEEEEETTTEEEEEETTS-CEEEEEE-----CCCCSSCCEEEEEEETTT-TEEEEEETTSEEEEEETTS-CE----EE--
T ss_pred EEEEEeCCCEEEEEECCC-CceEEEe-----ccCCCCCCeEEEEECCCC-CEEEEECCCCCEEEEECCC-CE----EE--
Confidence 99999 999999999984 3322221 223456889999999999 8999999999999999953 32 22
Q ss_pred eccCCCCccceeeccccceeEEEEecCCC-EEEEEe-CCeEEEEEccCC---CCceeeeeeccccccccccccccCCccc
Q 010256 326 EEQEAPGTRSFFTEIIASISDIKFARNGR-HILSRD-YMTLKLWDINMD---SGPVATFQVHEHLRPKLCDLYENDSIFD 400 (514)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~~-~~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (514)
.+.+|...|.+++|+|+++ ++++++ |+.|++||++.. ...+..+ .|...
T Consensus 199 ----------~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~--------------- 252 (383)
T 3ei3_B 199 ----------KEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKP--------------- 252 (383)
T ss_dssp ----------EEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSC---------------
T ss_pred ----------EeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCc---------------
Confidence 2455668999999999999 888876 599999999862 2233333 44433
Q ss_pred eeeEEEcC-CCCEEEEEeCCCcEEEEecCCCceeeeeecCCC-----------------cceeEEEECCCCCceeecCCC
Q 010256 401 KFECCLSG-DGGRVATGSYSNLFRVFGCSEGSAESTTLEASK-----------------NPMRRQVQTPSRPSRPLGSLS 462 (514)
Q Consensus 401 v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~v~~~~~~~~~~~l~s~s~d 462 (514)
|.+++|+| ++++|++++.|+.|++||+.++... ..+.+|. ..+..+.++|++++ +++.|
T Consensus 253 v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d 329 (383)
T 3ei3_B 253 VNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKP-DQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDK 329 (383)
T ss_dssp EEEEEECTTTSCEEEEEESSSEEEEEETTBTTSC-SEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCC
T ss_pred eEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccc-cccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCC
Confidence 45999999 9999999999999999999887543 3444332 23444778888888 88999
Q ss_pred CeEEEeeCCCCCccccCCccc--ccccceEEEEEcCCCCEEEEEecCcEEEEeC
Q 010256 463 GVVRRVKGADNSALDANGNAF--DFSMKLLHLAWHPSENSIACAASNSLYMYYA 514 (514)
Q Consensus 463 ~~v~i~~~~~~~~~~~~~~~~--~~~~~v~~~~~spd~~~l~~~~~~~~~i~~~ 514 (514)
+.|++++-... ....... .+...+..++|+|++++|++++++.+.+|..
T Consensus 330 ~~i~iwd~~~~---~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~sd~~i~iw~~ 380 (383)
T 3ei3_B 330 RTIDIYDANSG---GLVHQLRDPNAAGIISLNKFSPTGDVLASGMGFNILIWNR 380 (383)
T ss_dssp CCEEEEETTTC---CEEEEECBTTBCSCCCEEEECTTSSEEEEEETTEEEEEEC
T ss_pred CeEEEEecCCC---ceeeeecCCCCCceEEEEEEecCccEEEEecCCcEEEEec
Confidence 99999432211 1111111 2467778889999999999999999999963
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-34 Score=292.19 Aligned_cols=288 Identities=16% Similarity=0.214 Sum_probs=221.6
Q ss_pred eeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCcc-----EEEEEeeccCCCccccCCcc
Q 010256 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK-----KVKKVFDWNVHPEKAAGNGP 166 (514)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~-----~~~~~~~~~~~~~~~~~~~~ 166 (514)
....+++|. +.|++++|+|. ++.+|++|+.|++|++|++... ........+ ...
T Consensus 374 ~~~~l~~H~------------~~V~~v~~~~~-~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h--------~~~ 432 (694)
T 3dm0_A 374 LKGTMRAHT------------DMVTAIATPID-NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGH--------SHF 432 (694)
T ss_dssp EEEEEECCS------------SCEEEEECCTT-CCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECC--------SSC
T ss_pred hhhhcccCC------------ceeEEEEecCC-CCCEEEEEeCCCcEEEEEccCCCcccccccceecCC--------CCc
Confidence 334577887 99999999642 3469999999999999998753 222222322 234
Q ss_pred eecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCC
Q 010256 167 IFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE 246 (514)
Q Consensus 167 v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 246 (514)
|. .++|+|+++.+ ++++.|+.|++|| +.. ..+.+. +.+|...|.+++|+|+++
T Consensus 433 v~-------~v~~s~~g~~l------------~sgs~Dg~v~vwd-~~~------~~~~~~-~~~h~~~v~~~~~s~~~~ 485 (694)
T 3dm0_A 433 VE-------DVVLSSDGQFA------------LSGSWDGELRLWD-LAA------GVSTRR-FVGHTKDVLSVAFSLDNR 485 (694)
T ss_dssp EE-------EEEECTTSSEE------------EEEETTSEEEEEE-TTT------TEEEEE-EECCSSCEEEEEECTTSS
T ss_pred EE-------EEEECCCCCEE------------EEEeCCCcEEEEE-CCC------CcceeE-EeCCCCCEEEEEEeCCCC
Confidence 44 78999999998 9999999999999 332 222233 378999999999999999
Q ss_pred EEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCC-CcEEEEEecCCeEEEEEcCCCccccccccc
Q 010256 247 TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTH-CNMLAYSSSKGSIRLIDMRQSALCDTHSKL 324 (514)
Q Consensus 247 ~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 324 (514)
+|+++ .|++|++||.... ....+. ....+|...|.+++|+|++ ...|++++.|+.|++||+++++..
T Consensus 486 ~l~s~s~D~~i~iwd~~~~-~~~~~~----~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~------ 554 (694)
T 3dm0_A 486 QIVSASRDRTIKLWNTLGE-CKYTIS----EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR------ 554 (694)
T ss_dssp CEEEEETTSCEEEECTTSC-EEEEEC----SSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEE------
T ss_pred EEEEEeCCCEEEEEECCCC-cceeec----cCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEE------
Confidence 99999 9999999998633 222211 1335688999999999986 258999999999999999886642
Q ss_pred eeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceee
Q 010256 325 FEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFE 403 (514)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 403 (514)
..+.+|.+.|++++|+|++++|++|+ |+.|++||+.+ ++.+..+..+.. +.+
T Consensus 555 ----------~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~-~~~~~~~~~~~~----------------v~~ 607 (694)
T 3dm0_A 555 ----------STLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE-GKKLYSLEANSV----------------IHA 607 (694)
T ss_dssp ----------EEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTT-TEEEECCBCSSC----------------EEE
T ss_pred ----------EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC-CceEEEecCCCc----------------EEE
Confidence 23556778999999999999999986 49999999987 666665543321 348
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCC-------------------CcceeEEEECCCCCceeecCCCCe
Q 010256 404 CCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS-------------------KNPMRRQVQTPSRPSRPLGSLSGV 464 (514)
Q Consensus 404 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------------------~~~v~~~~~~~~~~~l~s~s~d~~ 464 (514)
++|+|++.+|++++ |+.|++||+.++... ..+..+ ...+.+++|+|++++|++|+.||.
T Consensus 608 ~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~ 685 (694)
T 3dm0_A 608 LCFSPNRYWLCAAT-EHGIKIWDLESKSIV-EDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGV 685 (694)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEE-EEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEcCCCcEEEEEc-CCCEEEEECCCCCCh-hhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCe
Confidence 99999999888765 566999999987433 333321 123678999999999999999999
Q ss_pred EEE
Q 010256 465 VRR 467 (514)
Q Consensus 465 v~i 467 (514)
|++
T Consensus 686 i~i 688 (694)
T 3dm0_A 686 IRV 688 (694)
T ss_dssp EEE
T ss_pred EEE
Confidence 999
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-34 Score=257.64 Aligned_cols=241 Identities=17% Similarity=0.188 Sum_probs=191.8
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
+.|++++| +++|++|++++.|++|++||+..+...
T Consensus 10 ~~V~~~~~--s~~g~~las~s~D~~v~iw~~~~~~~~------------------------------------------- 44 (297)
T 2pm7_B 10 EMIHDAVM--DYYGKRMATCSSDKTIKIFEVEGETHK------------------------------------------- 44 (297)
T ss_dssp SCEEEEEE--CTTSSEEEEEETTSCEEEEEBCSSCBC-------------------------------------------
T ss_pred CceEEEEE--CCCCCEEEEEeCCCEEEEEecCCCCcE-------------------------------------------
Confidence 88999999 678889999999999999998643100
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC--CCEEEEe-cCCeEEEEeccCCCceee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
+... +.+|.+.|.+++|+++ +++|++| .|++|++||+++++....
T Consensus 45 -------------------------------~~~~-l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~ 92 (297)
T 2pm7_B 45 -------------------------------LIDT-LTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQI 92 (297)
T ss_dssp -------------------------------CCEE-ECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCC
T ss_pred -------------------------------EEEE-EccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEE
Confidence 0011 3689999999999864 8999999 999999999986532111
Q ss_pred eeccCCCcccccCCceEEEEEecC--CCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 347 (514)
..+..|...|.+++|+|+ + .+|++++.|+.|++||++++.... ...+.+|...|.++
T Consensus 93 ------~~~~~h~~~v~~v~~~p~~~g-~~l~s~s~d~~v~~wd~~~~~~~~--------------~~~~~~h~~~v~~~ 151 (297)
T 2pm7_B 93 ------AVHAVHSASVNSVQWAPHEYG-PMLLVASSDGKVSVVEFKENGTTS--------------PIIIDAHAIGVNSA 151 (297)
T ss_dssp ------EEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEEBCSSSCBC--------------CEEEECCSSCEEEE
T ss_pred ------EEeecCCCceeEEEeCcCCCC-cEEEEEECCCcEEEEEecCCCcee--------------eeeeecccCccceE
Confidence 135678899999999997 6 799999999999999998753210 12245677899999
Q ss_pred EEecC-------------CCEEEEEe-CCeEEEEEccCCCC----ceeeeeeccccccccccccccCCccceeeEEEcCC
Q 010256 348 KFARN-------------GRHILSRD-YMTLKLWDINMDSG----PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (514)
Q Consensus 348 ~~s~~-------------g~~l~~~~-~~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 409 (514)
+|+|+ +++|++|+ |++|++||++. +. ....+.+|... |.+++|+|+
T Consensus 152 ~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~-~~~~~~~~~~l~~H~~~---------------V~~v~~sp~ 215 (297)
T 2pm7_B 152 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS-DAQTYVLESTLEGHSDW---------------VRDVAWSPT 215 (297)
T ss_dssp EECCCC------------CCEEEEEETTSCEEEEEEET-TTTEEEEEEEECCCSSC---------------EEEEEECCC
T ss_pred eecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcC-CCceEEEEEEecCCCCc---------------eEEEEECCC
Confidence 99997 57899876 59999999986 44 44566677654 449999999
Q ss_pred C---CEEEEEeCCCcEEEEecCCCce--eeeee--cCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 410 G---GRVATGSYSNLFRVFGCSEGSA--ESTTL--EASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 410 ~---~~l~s~~~dg~i~iwd~~~~~~--~~~~~--~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+ ++|++++.|+.|+|||+.+... ....+ ..|...+.+++|+|++++||+++.|+.|++
T Consensus 216 ~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~l 280 (297)
T 2pm7_B 216 VLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL 280 (297)
T ss_dssp CSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEE
T ss_pred CCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEE
Confidence 5 8999999999999999986431 11233 577889999999999999999999999999
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-35 Score=273.29 Aligned_cols=295 Identities=11% Similarity=0.051 Sum_probs=203.4
Q ss_pred cceeEEEEeeCCCCcEEEEeeCC-------CeEEEEEcCccEE------EEE--eeccCCCccccCCcceecccccCCce
Q 010256 113 EKINKIRWCQSANSALYLLSTND-------KTIKLWKVQEKKV------KKV--FDWNVHPEKAAGNGPIFGSHVSAIPK 177 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d-------~~i~iw~~~~~~~------~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~ 177 (514)
-+|++++|+ +++++|++|+.+ +.|++|++..+.. ... ..+..+. .. ..
T Consensus 15 ~PV~sv~fs--~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~------~~---------v~ 77 (365)
T 4h5i_A 15 YPAYGAKFL--NNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDND------DS---------PT 77 (365)
T ss_dssp SCEEEEEEE--ETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTS------CC---------CC
T ss_pred CCEEEEEEe--CCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCC------Cc---------eE
Confidence 579999995 577899998653 3699999875421 111 1121111 11 22
Q ss_pred eeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccc-cccccc-cccccCccCeEEEEECCCCCEEEE--e-c
Q 010256 178 SYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNL-VAGCRR-IYAHAHDYHINSISNNSDGETFIS--A-D 252 (514)
Q Consensus 178 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~-~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~s--~-~ 252 (514)
++++++..+. .........++.++.++.+++|+ +...+... ...... .....+...+.+++|+|||+++++ + .
T Consensus 78 s~~~~~~~~~-~g~~~~~~~l~s~~~d~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~ 155 (365)
T 4h5i_A 78 AIDASKGIIL-VGCNENSTKITQGKGNKHLRKFK-YDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKV 155 (365)
T ss_dssp EEEEETTEEE-EECCCCHHHHHHTSCCCCEEEEE-EETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCS
T ss_pred EEEeCCCEEE-EEECCCccEEEEecCCCcEEEEE-ecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCC
Confidence 3444444331 11112223447788899999999 43322211 111111 111345567899999999999764 4 6
Q ss_pred CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCC
Q 010256 253 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 332 (514)
Q Consensus 253 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 332 (514)
|++|++||+++.+.... + .|...|.+++|+|+| +++++++.+ .+++|+..++.....
T Consensus 156 d~~i~iwd~~~~~~~~~--------~-~~~~~V~~v~fspdg-~~l~s~s~~-~~~~~~~~~~~~~~~------------ 212 (365)
T 4h5i_A 156 PAIMRIIDPSDLTEKFE--------I-ETRGEVKDLHFSTDG-KVVAYITGS-SLEVISTVTGSCIAR------------ 212 (365)
T ss_dssp SCEEEEEETTTTEEEEE--------E-ECSSCCCEEEECTTS-SEEEEECSS-CEEEEETTTCCEEEE------------
T ss_pred CCEEEEeECCCCcEEEE--------e-CCCCceEEEEEccCC-ceEEeccce-eEEEEEeccCcceee------------
Confidence 89999999997665432 2 367789999999999 899988855 566677666554211
Q ss_pred ccceeeccccceeEEEEecCCCEEEEEe-CC----eEEEEEccCCCCc----eeeeeeccccccccccccccCCccceee
Q 010256 333 TRSFFTEIIASISDIKFARNGRHILSRD-YM----TLKLWDINMDSGP----VATFQVHEHLRPKLCDLYENDSIFDKFE 403 (514)
Q Consensus 333 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~----~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 403 (514)
....+|...|.+++|+|+++++++++ ++ .+++|++.. ... ...+..|... |++
T Consensus 213 --~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~---------------V~~ 274 (365)
T 4h5i_A 213 --KTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKS-GNTSVLRSKQVTNRFKG---------------ITS 274 (365)
T ss_dssp --ECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEET-TEEEEEEEEEEESSCSC---------------EEE
T ss_pred --eecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccc-ceecceeeeeecCCCCC---------------eEe
Confidence 11334667899999999999999864 33 678888875 321 1233334332 559
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 404 CCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 404 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
++|+|||++||+|+.|+.|+|||+.+++.+...+++|..+|++++|+||+++|||+|.|++|||
T Consensus 275 ~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrv 338 (365)
T 4h5i_A 275 MDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHI 338 (365)
T ss_dssp EEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEE
T ss_pred EEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence 9999999999999999999999999986554557899999999999999999999999999999
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=265.08 Aligned_cols=288 Identities=10% Similarity=0.136 Sum_probs=222.2
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
+.|.+++| ++++++|++++.|+.|++||+.+++......
T Consensus 9 ~~i~~~~~--s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~--------------------------------------- 47 (372)
T 1k8k_C 9 EPISCHAW--NKDRTQIAICPNNHEVHIYEKSGNKWVQVHE--------------------------------------- 47 (372)
T ss_dssp SCCCEEEE--CTTSSEEEEECSSSEEEEEEEETTEEEEEEE---------------------------------------
T ss_pred CCeEEEEE--CCCCCEEEEEeCCCEEEEEeCCCCcEEeeee---------------------------------------
Confidence 88999999 5678899999999999999998765221111
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
+.+|...|.+++|+|++++|+++ .|+.|++||+++.+.....
T Consensus 48 ------------------------------------~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~- 90 (372)
T 1k8k_C 48 ------------------------------------LKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTL- 90 (372)
T ss_dssp ------------------------------------EECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEE-
T ss_pred ------------------------------------ecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeE-
Confidence 24677899999999999999999 9999999999865433221
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
.+..|...|.+++|+|++ ++|++++.|+.|++||++.+..... .. ....+|...|.+++|+|
T Consensus 91 -----~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~-~~-----------~~~~~~~~~i~~~~~~~ 152 (372)
T 1k8k_C 91 -----VILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWV-CK-----------HIKKPIRSTVLSLDWHP 152 (372)
T ss_dssp -----ECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEE-EE-----------EECTTCCSCEEEEEECT
T ss_pred -----EeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCccee-ee-----------eeecccCCCeeEEEEcC
Confidence 345688899999999998 8999999999999999987653110 01 11234567899999999
Q ss_pred CCCEEEEEeC-CeEEEEEccC-----------------CCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEE
Q 010256 352 NGRHILSRDY-MTLKLWDINM-----------------DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 413 (514)
Q Consensus 352 ~g~~l~~~~~-~~i~iwd~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 413 (514)
++++|++++. +.|++||+.. .++.+..+..|... +.+++|+|++++|
T Consensus 153 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~~l 217 (372)
T 1k8k_C 153 NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW---------------VHGVCFSANGSRV 217 (372)
T ss_dssp TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC---------------EEEEEECSSSSEE
T ss_pred CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCe---------------EEEEEECCCCCEE
Confidence 9999999864 9999999642 14455555555433 4599999999999
Q ss_pred EEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCC------C--------------
Q 010256 414 ATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGAD------N-------------- 473 (514)
Q Consensus 414 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~------~-------------- 473 (514)
++++.||.|++||+.+++ ....+..|..++..++|+|++++++++ .|+.+++++... .
T Consensus 218 ~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (372)
T 1k8k_C 218 AWVSHDSTVCLADADKKM-AVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG 295 (372)
T ss_dssp EEEETTTEEEEEEGGGTT-EEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC-------
T ss_pred EEEeCCCEEEEEECCCCc-eeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhh
Confidence 999999999999999875 447888999999999999999999988 899999932221 0
Q ss_pred -----------CccccC------Ccc-cccccceEEEEEc-CCC---CEEEEEe-cCcEEEEe
Q 010256 474 -----------SALDAN------GNA-FDFSMKLLHLAWH-PSE---NSIACAA-SNSLYMYY 513 (514)
Q Consensus 474 -----------~~~~~~------~~~-~~~~~~v~~~~~s-pd~---~~l~~~~-~~~~~i~~ 513 (514)
...... ... ..|...|++++|+ +++ ++|++++ ++.+++|.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 296 LTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 358 (372)
T ss_dssp -CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred cchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence 000000 112 2689999999977 666 8999888 66678885
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-33 Score=268.06 Aligned_cols=282 Identities=14% Similarity=0.172 Sum_probs=217.7
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccce
Q 010256 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (514)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (514)
..+....|+|++++||+|+.||.|++||+.+++ ....+.+|. ..|
T Consensus 98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------------~~~~~~~h~------------~~v 142 (420)
T 3vl1_A 98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL-----------------------QREIDQAHV------------SEI 142 (420)
T ss_dssp CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE-----------------------EEEETTSSS------------SCE
T ss_pred CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc-----------------------eeeeccccc------------Ccc
Confidence 556666889999999999999999999987655 335567887 889
Q ss_pred eEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCC
Q 010256 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (514)
Q Consensus 116 ~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (514)
++++| ++++.+|++++.|+.|++||+.+++...
T Consensus 143 ~~~~~--~~~~~~l~s~s~d~~i~iwd~~~~~~~~--------------------------------------------- 175 (420)
T 3vl1_A 143 TKLKF--FPSGEALISSSQDMQLKIWSVKDGSNPR--------------------------------------------- 175 (420)
T ss_dssp EEEEE--CTTSSEEEEEETTSEEEEEETTTCCCCE---------------------------------------------
T ss_pred EEEEE--CCCCCEEEEEeCCCeEEEEeCCCCcCce---------------------------------------------
Confidence 99999 5577899999999999999998654211
Q ss_pred CcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccC
Q 010256 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 274 (514)
Q Consensus 196 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~ 274 (514)
. +.+|...|.+++|+|++++|+++ .|++|++||+++++....+.
T Consensus 176 -------------------------------~-~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~--- 220 (420)
T 3vl1_A 176 -------------------------------T-LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN--- 220 (420)
T ss_dssp -------------------------------E-EECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC---
T ss_pred -------------------------------E-EcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEee---
Confidence 0 25688899999999999999999 99999999998665443321
Q ss_pred CCcccccCCc---------------------eEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCc
Q 010256 275 PANMEDLTEV---------------------ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT 333 (514)
Q Consensus 275 ~~~~~~~~~~---------------------i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 333 (514)
....+... +.+++|+|++ ++|++|+.||.|++||+++++... .+
T Consensus 221 --~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~----~~-------- 285 (420)
T 3vl1_A 221 --RKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQTI----QL-------- 285 (420)
T ss_dssp --BTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCEEE----EE--------
T ss_pred --cCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC-CEEEEEcCCCeEEEEECCCCceeE----Ec--------
Confidence 11123344 4445557888 899999999999999999876531 11
Q ss_pred cceeeccccceeEEEEecCCC-EEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCC
Q 010256 334 RSFFTEIIASISDIKFARNGR-HILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG 411 (514)
Q Consensus 334 ~~~~~~~~~~i~~~~~s~~g~-~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 411 (514)
...|...|.+++|+|+++ +|++|+. +.|++||+++...++..+..|.... +.++ +.++++
T Consensus 286 ---~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~--------------v~~~-~~~~~~ 347 (420)
T 3vl1_A 286 ---PSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTP--------------INNV-YFAAGA 347 (420)
T ss_dssp ---CCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSC--------------EEEE-EEETTE
T ss_pred ---ccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCC--------------ceEE-EeCCCC
Confidence 234567899999999999 8888765 9999999997445577777743321 2355 456889
Q ss_pred EEEEEeCCCcEEEEecCCCce--------eeeeecCCCcceeEEEECCCCC---ceeecCCCCeEEE
Q 010256 412 RVATGSYSNLFRVFGCSEGSA--------ESTTLEASKNPMRRQVQTPSRP---SRPLGSLSGVVRR 467 (514)
Q Consensus 412 ~l~s~~~dg~i~iwd~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~---~l~s~s~d~~v~i 467 (514)
+|++++.||.|++|++..... ....+..|...+..++|+|+++ .+++.+.+|.+.+
T Consensus 348 ~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~ 414 (420)
T 3vl1_A 348 LFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCAL 414 (420)
T ss_dssp EEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEE
T ss_pred EEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEE
Confidence 999999999999999876322 1235667889999999999999 6666667788877
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=264.63 Aligned_cols=243 Identities=13% Similarity=0.159 Sum_probs=192.5
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
+.|++++| +++|++|++++.|++|++||+.+++.....
T Consensus 14 ~~V~~v~~--s~~g~~lasgs~D~~v~lwd~~~~~~~~~~---------------------------------------- 51 (316)
T 3bg1_A 14 DMIHDAQM--DYYGTRLATCSSDRSVKIFDVRNGGQILIA---------------------------------------- 51 (316)
T ss_dssp CCEEEEEE--CGGGCEEEEEETTTEEEEEEEETTEEEEEE----------------------------------------
T ss_pred CeEEEeeE--cCCCCEEEEEeCCCeEEEEEecCCCcEEEE----------------------------------------
Confidence 88999999 567889999999999999999765421110
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC--CCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
. +.+|...|.+++|++ ++++|++| .|++|++||++++.....
T Consensus 52 ----------------------------------~-l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~ 96 (316)
T 3bg1_A 52 ----------------------------------D-LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKS 96 (316)
T ss_dssp ----------------------------------E-EECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEE
T ss_pred ----------------------------------E-EcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEE
Confidence 0 267889999999986 48899999 999999999986532111
Q ss_pred eeccCCCcccccCCceEEEEEecC--CCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 347 (514)
..+.+|...|.+++|+|+ + .+|++|+.|+.|++||++.+.... . ...+.+|...+.++
T Consensus 97 ------~~~~~h~~~V~~v~~~p~~~g-~~lasgs~D~~i~lwd~~~~~~~~-------~------~~~~~~h~~~v~~~ 156 (316)
T 3bg1_A 97 ------HEHAGHDSSVNSVCWAPHDYG-LILACGSSDGAISLLTYTGEGQWE-------V------KKINNAHTIGCNAV 156 (316)
T ss_dssp ------EEECCCSSCCCEEEECCTTTC-SCEEEECSSSCEEEEEECSSSCEE-------E------CCBTTSSSSCBCCC
T ss_pred ------EEccCCCCceEEEEECCCCCC-cEEEEEcCCCCEEEEecCCCCCcc-------e------eeeeccccCCcceE
Confidence 145678999999999998 5 799999999999999998753210 0 11234566789999
Q ss_pred EEecC-----------------CCEEEEEe-CCeEEEEEccCCC--CceeeeeeccccccccccccccCCccceeeEEEc
Q 010256 348 KFARN-----------------GRHILSRD-YMTLKLWDINMDS--GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 407 (514)
Q Consensus 348 ~~s~~-----------------g~~l~~~~-~~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 407 (514)
+|+|+ +++|++|+ |++|++||++... +++..+.+|... |.+++|+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~---------------V~~v~~s 221 (316)
T 3bg1_A 157 SWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDW---------------VRDVAWA 221 (316)
T ss_dssp EECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSC---------------EEEEECC
T ss_pred EEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCc---------------eEEEEec
Confidence 99997 46888876 5999999997522 345666677654 4499999
Q ss_pred CCC----CEEEEEeCCCcEEEEecCCC---ceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 408 GDG----GRVATGSYSNLFRVFGCSEG---SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 408 ~~~----~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
|++ ++|++++.|+.|++|++.+. ......+..|...|.+++|+|++++|++++.|++|++
T Consensus 222 p~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~l 288 (316)
T 3bg1_A 222 PSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTL 288 (316)
T ss_dssp CCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEE
T ss_pred CCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEE
Confidence 987 89999999999999999763 2223456788999999999999999999999999999
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=268.68 Aligned_cols=305 Identities=10% Similarity=0.105 Sum_probs=226.0
Q ss_pred eeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceeccc
Q 010256 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (514)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (514)
....+.+|. +.|++++|+| .+|++++.||.|++|++.+++....
T Consensus 8 ~~~~~~~h~------------~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~~~~~~-------------------- 51 (397)
T 1sq9_A 8 TANAGKAHD------------ADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNENP-------------------- 51 (397)
T ss_dssp EEEESSCSS------------SCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCCG--------------------
T ss_pred hhhhhhhhh------------cCeEEEEecC----CeEEEEcCCCEEEEEECCCcccccC--------------------
Confidence 445677888 8999999954 5999999999999999976531000
Q ss_pred ccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC----C--
Q 010256 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD----G-- 245 (514)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~-- 245 (514)
...... +.+|...|.+++|+|+ +
T Consensus 52 --------------------------------------------------~~~~~~-~~~h~~~v~~~~~~~~~~~~g~~ 80 (397)
T 1sq9_A 52 --------------------------------------------------KDKSYS-HFVHKSGLHHVDVLQAIERDAFE 80 (397)
T ss_dssp --------------------------------------------------GGGEEE-EECCTTCEEEEEEEEEEETTTEE
T ss_pred --------------------------------------------------CCcceE-EecCCCcEEEEEEecccccCCcc
Confidence 000111 2578899999999999 9
Q ss_pred -CEEEEe-cCCeEEEEeccCCCceeeeeccCCCccccc-----CCceEEEEEe----cCCCcE-EEEEecCCeEEEEEcC
Q 010256 246 -ETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDL-----TEVITSAEFH----PTHCNM-LAYSSSKGSIRLIDMR 313 (514)
Q Consensus 246 -~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-----~~~i~~v~~~----p~~~~~-l~~~~~dg~i~~wd~~ 313 (514)
++|+++ .|+.|++||+.+.+...... ...+..| ...|.+++|+ |++ .+ |++++.||.|++||++
T Consensus 81 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~ 156 (397)
T 1sq9_A 81 LCLVATTSFSGDLLFYRITREDETKKVI---FEKLDLLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVKGTTYIWKFH 156 (397)
T ss_dssp EEEEEEEETTSCEEEEEEEECTTTCCEE---EEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEE
T ss_pred ccEEEEEcCCCCEEEEEccCCccccccc---ceeecccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCCCcEEEEeCC
Confidence 999998 89999999998765410000 0134455 5899999999 998 78 9999999999999998
Q ss_pred C------Ccccc-ccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeee---c
Q 010256 314 Q------SALCD-THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQV---H 382 (514)
Q Consensus 314 ~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~---~ 382 (514)
+ ++... .....+... ......|...|.+++|+|++ ++++++. +.|++||++. ++++..+.. |
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~h 229 (397)
T 1sq9_A 157 PFADESNSLTLNWSPTLELQGT-----VESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST-LRPLYNFESQHSM 229 (397)
T ss_dssp SSSSHHHHTTTCCCCEEEEEEE-----ECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT-TEEEEEEECCC--
T ss_pred ccccccccceeeccCcceeeee-----eccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCC-CceeEEEeccccc
Confidence 8 44321 000022110 00002366789999999999 8888865 9999999997 778888877 5
Q ss_pred ---cccccccccccccCCccceeeEEEcCCCCEEEEEeCC---CcEEEEecCCCceeeeeecC-------------CCcc
Q 010256 383 ---EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEA-------------SKNP 443 (514)
Q Consensus 383 ---~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~-------------~~~~ 443 (514)
... +.+++|+|++++|++++.| |.|++||+.+++ ....+.+ |...
T Consensus 230 ~~~~~~---------------i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 293 (397)
T 1sq9_A 230 INNSNS---------------IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE-RIGSLSVPTHSSQASLGEFAHSSW 293 (397)
T ss_dssp -CCCCC---------------EEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC-EEEEECBC--------CCBSBSSC
T ss_pred cccCCc---------------cceEEECCCCCEEEEEecCCCCceEEEEECCCCc-ccceeccCcccccccccccccCCc
Confidence 433 4499999999999999999 999999999874 4467777 9999
Q ss_pred eeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCccc------cc---------------ccceEEEEEcCCC----
Q 010256 444 MRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAF------DF---------------SMKLLHLAWHPSE---- 498 (514)
Q Consensus 444 v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~------~~---------------~~~v~~~~~spd~---- 498 (514)
|.+++|+|++++|++++.|+.|++++-... +...... .| ...|++++|+|++
T Consensus 294 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~ 370 (397)
T 1sq9_A 294 VMSLSFNDSGETLCSAGWDGKLRFWDVKTK---ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSG 370 (397)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETTTT---EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBS
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEcCCC---ceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccc
Confidence 999999999999999999999999332211 1111111 34 8899999999998
Q ss_pred ------CEEEEEe-cCcEEEEe
Q 010256 499 ------NSIACAA-SNSLYMYY 513 (514)
Q Consensus 499 ------~~l~~~~-~~~~~i~~ 513 (514)
++|++++ ++.+.+|.
T Consensus 371 ~~~~~~~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 371 MGADLNESLCCVCLDRSIRWFR 392 (397)
T ss_dssp TTCTTSCEEEEEETTTEEEEEE
T ss_pred ccccccceEEEecCCCcEEEEE
Confidence 7888887 66778885
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-34 Score=267.25 Aligned_cols=301 Identities=12% Similarity=0.123 Sum_probs=218.6
Q ss_pred cceeEEEEeeC--CCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 113 EKINKIRWCQS--ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 113 ~~v~~i~~~~~--~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|++++|+|. .....+++++.++.|++||+.+++........
T Consensus 19 ~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~----------------------------------- 63 (366)
T 3k26_A 19 QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSY----------------------------------- 63 (366)
T ss_dssp SCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEE-----------------------------------
T ss_pred CceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeec-----------------------------------
Confidence 89999999763 12346777777789999999876532221111
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC----CCEEEEe-cCCeEEEEeccCCC
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD----GETFISA-DDLRINLWNLEISN 265 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~l~s~-~d~~i~iwd~~~~~ 265 (514)
....|...|.+++|+|+ +++|++| .|+.|++||+++.+
T Consensus 64 -------------------------------------~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~ 106 (366)
T 3k26_A 64 -------------------------------------VDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQ 106 (366)
T ss_dssp -------------------------------------ECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCC
T ss_pred -------------------------------------cccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhce
Confidence 01246688999999999 6689998 99999999998665
Q ss_pred ceeeeeccCCCcccccCCceEEEEEec-CCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccce
Q 010256 266 QSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (514)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~i~~v~~~p-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 344 (514)
... .+.+|...|.+++|+| ++ .+|++++.||.|++||+++++.. ..+.. +.+|...|
T Consensus 107 ~~~--------~~~~~~~~i~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~----~~~~~---------~~~~~~~v 164 (366)
T 3k26_A 107 CIK--------HYVGHGNAINELKFHPRDP-NLLLSVSKDHALRLWNIQTDTLV----AIFGG---------VEGHRDEV 164 (366)
T ss_dssp EEE--------EEESCCSCEEEEEECSSCT-TEEEEEETTSCEEEEETTTTEEE----EEECS---------TTSCSSCE
T ss_pred Eee--------eecCCCCcEEEEEECCCCC-CEEEEEeCCCeEEEEEeecCeEE----EEecc---------cccccCce
Confidence 443 4567899999999999 66 89999999999999999987652 22210 14566899
Q ss_pred eEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccc---------------c-ccccccCCccceeeEEEc
Q 010256 345 SDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPK---------------L-CDLYENDSIFDKFECCLS 407 (514)
Q Consensus 345 ~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~---------------~-~~~~~~~~~~~v~~~~~s 407 (514)
.+++|+|++++|++++. +.|++||++. ++.+..+..+...... . ....+.. .|.+++|+
T Consensus 165 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~ 240 (366)
T 3k26_A 165 LSADYDLLGEKIMSCGMDHSLKLWRINS-KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN---YVDCVRWL 240 (366)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEESCS-HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS---CCCEEEEE
T ss_pred eEEEECCCCCEEEEecCCCCEEEEECCC-CccccccceeEEecCCCCcccccceeeccCccccccCCcc---eEEEEEEc
Confidence 99999999999999864 9999999986 4443333220000000 0 0000111 24489998
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCce-------------eeeeecCCCcceeEEEECCC--CCceeecCCCCeEEEeeCCC
Q 010256 408 GDGGRVATGSYSNLFRVFGCSEGSA-------------ESTTLEASKNPMRRQVQTPS--RPSRPLGSLSGVVRRVKGAD 472 (514)
Q Consensus 408 ~~~~~l~s~~~dg~i~iwd~~~~~~-------------~~~~~~~~~~~v~~~~~~~~--~~~l~s~s~d~~v~i~~~~~ 472 (514)
+++|++++.||.|++||+.++.. ....+..|...+..++|+|+ +++|++++.||.|++++-..
T Consensus 241 --~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~ 318 (366)
T 3k26_A 241 --GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEV 318 (366)
T ss_dssp --TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCS
T ss_pred --CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCC
Confidence 78999999999999999987643 24677889999999999999 99999999999999933222
Q ss_pred CCccc-cCCccccc--ccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 473 NSALD-ANGNAFDF--SMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 473 ~~~~~-~~~~~~~~--~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
..... .......| ...|++++|+|++++|++++ ++.+++|+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 363 (366)
T 3k26_A 319 EDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWD 363 (366)
T ss_dssp SSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEE
Confidence 11000 11122234 78999999999999999888 55788886
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-34 Score=275.53 Aligned_cols=323 Identities=10% Similarity=0.142 Sum_probs=228.1
Q ss_pred EEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeee-ccCCCccccccccccccceeEEEE
Q 010256 42 EFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF-QSHEPEFDYLKSLEIEEKINKIRW 120 (514)
Q Consensus 42 ~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~v~~i~~ 120 (514)
.|+|+++.+++++ .|+. ..+.+..+ .+|. +.|++++|
T Consensus 34 ~f~~~~~~~~~~~------~w~~------------------------~g~~~~~~~~~h~------------~~V~~~~~ 71 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNL------------------------RGKLIATLMENEP------------NSITSSAV 71 (437)
T ss_dssp GGCCCCCCCCCCC------GGGC------------------------CCCEEEEECTTTT------------SCEEEEEE
T ss_pred hcCCccccccccc------cccc------------------------cceEEeeeccCCC------------CceEEEEE
Confidence 4788888888765 3652 22355667 8887 88999999
Q ss_pred eeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccC
Q 010256 121 CQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFP 200 (514)
Q Consensus 121 ~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 200 (514)
+|. ++.+|++++.||+|++||+.+.+....
T Consensus 72 s~~-~~~~l~s~s~dg~v~vwd~~~~~~~~~------------------------------------------------- 101 (437)
T 3gre_A 72 SPG-ETPYLITGSDQGVIKIWNLKEIIVGEV------------------------------------------------- 101 (437)
T ss_dssp ECS-SSCEEEEEETTSEEEEEEHHHHHTTCC-------------------------------------------------
T ss_pred CCC-CCCEEEEecCCceEEEeECcccccCcc-------------------------------------------------
Confidence 541 667999999999999999875210000
Q ss_pred CCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEecc---CCCceeeeecc---
Q 010256 201 PGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLE---ISNQSFNIVDV--- 273 (514)
Q Consensus 201 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~---~~~~~~~~~~~--- 273 (514)
..+.. ...|...|.+++|+|++++|+++ .|++|++||++ .++.. .....
T Consensus 102 ---------------------~~~~~--~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~~~~~i 157 (437)
T 3gre_A 102 ---------------------YSSSL--TYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEV-KFLNCECI 157 (437)
T ss_dssp ---------------------CSCSE--EEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEE-EEEEEEEE
T ss_pred ---------------------cceee--eccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCcee-ecccccee
Confidence 00000 13588999999999999999999 99999999995 23221 11100
Q ss_pred CCCcccc--cCCceEEEE--EecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 274 KPANMED--LTEVITSAE--FHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 274 ~~~~~~~--~~~~i~~v~--~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
....+.. +...+.++. ++|++ .+|++|+.|+.|++||+++++.. ..+..+ .|...|++++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~----------~h~~~v~~~~~ 222 (437)
T 3gre_A 158 RKINLKNFGKNEYAVRMRAFVNEEK-SLLVALTNLSRVIIFDIRTLERL----QIIENS----------PRHGAVSSICI 222 (437)
T ss_dssp EEEEGGGGSSCCCEEEEEEEECSSC-EEEEEEETTSEEEEEETTTCCEE----EEEECC----------GGGCCEEEEEE
T ss_pred EEEEccCcccccCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCeee----EEEccC----------CCCCceEEEEE
Confidence 0001122 566777777 55787 89999999999999999987652 222221 16689999999
Q ss_pred ecCCCEEEEEeC-CeEEEEEccCCCCceeeee-eccccccccccccccCCccceeeEEE----cCCCCEEEEEeCCCcEE
Q 010256 350 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQ-VHEHLRPKLCDLYENDSIFDKFECCL----SGDGGRVATGSYSNLFR 423 (514)
Q Consensus 350 s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~----s~~~~~l~s~~~dg~i~ 423 (514)
+|++++|++|+. +.|++||++. ++++..+. .|... |.+++| ++++++|++|+.||.|+
T Consensus 223 s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~---------------v~~~~~~~~~s~~~~~l~s~~~dg~i~ 286 (437)
T 3gre_A 223 DEECCVLILGTTRGIIDIWDIRF-NVLIRSWSFGDHAP---------------ITHVEVCQFYGKNSVIVVGGSSKTFLT 286 (437)
T ss_dssp CTTSCEEEEEETTSCEEEEETTT-TEEEEEEBCTTCEE---------------EEEEEECTTTCTTEEEEEEESTTEEEE
T ss_pred CCCCCEEEEEcCCCeEEEEEcCC-ccEEEEEecCCCCc---------------eEEEEeccccCCCccEEEEEcCCCcEE
Confidence 999999999865 9999999997 77777765 33322 347744 45788999999999999
Q ss_pred EEecCCCceeeeeecC--------------------------CCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCcc-
Q 010256 424 VFGCSEGSAESTTLEA--------------------------SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSAL- 476 (514)
Q Consensus 424 iwd~~~~~~~~~~~~~--------------------------~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~- 476 (514)
+||+.+++.. ..+.+ |...|.+++|+ ++++|++++.|+.|++++-......
T Consensus 287 iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~ 364 (437)
T 3gre_A 287 IWNFVKGHCQ-YAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSK 364 (437)
T ss_dssp EEETTTTEEE-EEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCE
T ss_pred EEEcCCCcEE-EEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccce
Confidence 9999987543 33332 66778889999 7799999999999999322111100
Q ss_pred ccC---------------------------------CcccccccceEEEEEcCC--CCEEEEEe-cCcEEEEe
Q 010256 477 DAN---------------------------------GNAFDFSMKLLHLAWHPS--ENSIACAA-SNSLYMYY 513 (514)
Q Consensus 477 ~~~---------------------------------~~~~~~~~~v~~~~~spd--~~~l~~~~-~~~~~i~~ 513 (514)
.+. .....|...|++++|+++ +.+|++++ ++.+.||+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 365 AVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred EEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 000 001128899999999999 77899888 56677774
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=267.52 Aligned_cols=325 Identities=12% Similarity=0.168 Sum_probs=242.0
Q ss_pred eeeeccCCCccccccccccccc-eeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceeccc
Q 010256 93 KTEFQSHEPEFDYLKSLEIEEK-INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (514)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~-v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (514)
...+.+|. .. +.++.+ . +.++++++.||.|++||+.+++.......+ .+.|.
T Consensus 114 ~~~l~~h~------------~~v~~~~~~--~--~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h--------~~~V~--- 166 (464)
T 3v7d_B 114 RTTLRGHM------------TSVITCLQF--E--DNYVITGADDKMIRVYDSINKKFLLQLSGH--------DGGVW--- 166 (464)
T ss_dssp EEEEECCS------------SSCEEEEEE--E--TTEEEEEETTSCEEEEETTTTEEEEEECCC--------SSCEE---
T ss_pred eEEEcCCC------------CCcEEEEEE--C--CCEEEEEcCCCcEEEEECCCCcEEEEEeCC--------CcCEE---
Confidence 35677887 55 566666 3 459999999999999999999877666544 34555
Q ss_pred ccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEEC--CCCCEEE
Q 010256 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNN--SDGETFI 249 (514)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~ 249 (514)
.++|++++ .+ ++++.|+.|++|| +.. ..+... +.+|...|.+++|+ +++++++
T Consensus 167 ----~l~~~~~~-~l------------~s~s~dg~i~vwd-~~~------~~~~~~-~~~h~~~v~~l~~~~~~~~~~l~ 221 (464)
T 3v7d_B 167 ----ALKYAHGG-IL------------VSGSTDRTVRVWD-IKK------GCCTHV-FEGHNSTVRCLDIVEYKNIKYIV 221 (464)
T ss_dssp ----EEEECSTT-EE------------EEEETTSCEEEEE-TTT------TEEEEE-ECCCSSCEEEEEEEESSSCEEEE
T ss_pred ----EEEEcCCC-EE------------EEEeCCCCEEEEE-CCC------CcEEEE-ECCCCCccEEEEEecCCCCCEEE
Confidence 78898888 66 9999999999999 332 223333 37899999999998 5788999
Q ss_pred Ee-cCCeEEEEeccCCCceeeeecc--------C-------CCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcC
Q 010256 250 SA-DDLRINLWNLEISNQSFNIVDV--------K-------PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (514)
Q Consensus 250 s~-~d~~i~iwd~~~~~~~~~~~~~--------~-------~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~ 313 (514)
++ .|++|++||+++.......... . ...+.+|...+.++ ++++ +++++|+.|+.|++||++
T Consensus 222 s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~-~~l~~~~~d~~i~vwd~~ 298 (464)
T 3v7d_B 222 TGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHG-NIVVSGSYDNTLIVWDVA 298 (464)
T ss_dssp EEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEET-TEEEEEETTSCEEEEETT
T ss_pred EEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCC-CEEEEEeCCCeEEEEECC
Confidence 99 9999999999865432110000 0 01356677888777 5666 799999999999999999
Q ss_pred CCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccc
Q 010256 314 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDL 392 (514)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 392 (514)
+++.. .. +.+|...|.+++|+|+++++++|+. +.|++||+++ ++++..+.+|...
T Consensus 299 ~~~~~----~~------------~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~h~~~------- 354 (464)
T 3v7d_B 299 QMKCL----YI------------LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN-GELMYTLQGHTAL------- 354 (464)
T ss_dssp TTEEE----EE------------ECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT-TEEEEEECCCSSC-------
T ss_pred CCcEE----EE------------ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CcEEEEEeCCCCc-------
Confidence 87652 22 4456688999999999999999865 9999999997 8888888888765
Q ss_pred cccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCC
Q 010256 393 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGAD 472 (514)
Q Consensus 393 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~ 472 (514)
|.+++|+ +++|++++.||.|++||+.++.... . ..+...+..++++++++++++++ |+.|++.+-..
T Consensus 355 --------v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~-~-~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~ 421 (464)
T 3v7d_B 355 --------VGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF-S-YHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRS 421 (464)
T ss_dssp --------EEEEEEC--SSEEEEEETTSEEEEEETTTCCEEE-E-EECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTT
T ss_pred --------EEEEEEc--CCEEEEEeCCCcEEEEECCCCceee-e-ecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCC
Confidence 3378886 6899999999999999999764432 2 24666778889999999999998 89999943221
Q ss_pred CCccccCCcccccccceEEEEEcCCCCEEEEEecCcEEEE
Q 010256 473 NSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMY 512 (514)
Q Consensus 473 ~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~i~ 512 (514)
.. .+......+...|.+++|+ +..+++++++++..+|
T Consensus 422 g~--~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i 458 (464)
T 3v7d_B 422 GK--LVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFL 458 (464)
T ss_dssp CC--EEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEE
T ss_pred Cc--EEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEE
Confidence 11 1111234578999999997 4444555566665544
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-34 Score=293.25 Aligned_cols=258 Identities=13% Similarity=0.196 Sum_probs=203.3
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|++++|+|+|++|++|+.||.|+||++.++.. .....+.+|.
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~---------------------~~~~~l~~h~---------- 53 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH---------------------KLIDTLTGHE---------- 53 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE---------------------EEEEEECCCS----------
T ss_pred cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC---------------------ccceeccCCc----------
Confidence 348999999999999999999999999999999874332 2556788898
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|.+++|+|..++.+|++++.||.|++||+.+++......
T Consensus 54 --~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~------------------------------------- 94 (753)
T 3jro_A 54 --GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV------------------------------------- 94 (753)
T ss_dssp --SCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEE-------------------------------------
T ss_pred --CceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccccccc-------------------------------------
Confidence 88999999765558899999999999999998765322111
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC--CCEEEEe-cCCeEEEEeccCCCce
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQS 267 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~~ 267 (514)
..+|...|.+++|+|+ ++.+++| .||.|++||+++....
T Consensus 95 --------------------------------------~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~ 136 (753)
T 3jro_A 95 --------------------------------------HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT 136 (753)
T ss_dssp --------------------------------------ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC
T ss_pred --------------------------------------ccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc
Confidence 2567789999999999 9999999 9999999999866433
Q ss_pred eeeeccCCCcccccCCceEEEEEecC-------------CCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCcc
Q 010256 268 FNIVDVKPANMEDLTEVITSAEFHPT-------------HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTR 334 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~~v~~~p~-------------~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 334 (514)
... .+.+|...|.+++|+|. + .++++|+.||.|++||++++.......
T Consensus 137 ~~~------~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~-~~l~sgs~dg~I~iwd~~~~~~~~~~~------------ 197 (753)
T 3jro_A 137 SPI------IIDAHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVLE------------ 197 (753)
T ss_dssp CCE------EEECCSSCEEEEEECCCC---------CGGG-CCEEEEETTSCEEEEEEETTTTEEEEE------------
T ss_pred cee------EeecCCCceEEEEecCcccccccccccCCCC-CEEEEEECCCeEEEEeccCCcccceee------------
Confidence 221 45678899999999994 6 899999999999999998864321111
Q ss_pred ceeeccccceeEEEEecC---CCEEEEEe-CCeEEEEEccCCCCc-----eeeeeeccccccccccccccCCccceeeEE
Q 010256 335 SFFTEIIASISDIKFARN---GRHILSRD-YMTLKLWDINMDSGP-----VATFQVHEHLRPKLCDLYENDSIFDKFECC 405 (514)
Q Consensus 335 ~~~~~~~~~i~~~~~s~~---g~~l~~~~-~~~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 405 (514)
..+.+|...|.+++|+|+ ++++++++ ||.|++||+.. +.. +.....|.. .|++++
T Consensus 198 ~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~---------------~v~~l~ 261 (753)
T 3jro_A 198 STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN-EQGPWKKTLLKEEKFPD---------------VLWRAS 261 (753)
T ss_dssp EEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS-SSSCCBCCBSSSSCCSS---------------CCCCEE
T ss_pred eeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC-CCCcceeEEeccCCCCC---------------ceEEEE
Confidence 224567789999999999 89999976 49999999986 321 111112222 244899
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCCCc
Q 010256 406 LSGDGGRVATGSYSNLFRVFGCSEGS 431 (514)
Q Consensus 406 ~s~~~~~l~s~~~dg~i~iwd~~~~~ 431 (514)
|+|+|++|++++.||.|++|++..+.
T Consensus 262 ~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 262 WSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp ECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred EcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 99999999999999999999998643
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=258.12 Aligned_cols=293 Identities=15% Similarity=0.185 Sum_probs=221.4
Q ss_pred ccccccceEEEEEcCC---CCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccc
Q 010256 31 EVQEVDIISAIEFDKS---GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~---g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (514)
..+|.+.|++++|+|+ |++|++|+.||.|+||++.+.... ....+.+|.
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~---------------------~~~~~~~h~------- 86 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT---------------------IPKAQQMHT------- 86 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE---------------------EEEEEEECS-------
T ss_pred ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce---------------------eEEEecccc-------
Confidence 4589999999999999 699999999999999999863321 335677887
Q ss_pred ccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccc
Q 010256 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (514)
Q Consensus 108 ~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 187 (514)
..|.+++| ++++.+|++++.||.|++||+.+++....
T Consensus 87 -----~~v~~~~~--~~~~~~l~s~~~dg~v~iwd~~~~~~~~~------------------------------------ 123 (368)
T 3mmy_A 87 -----GPVLDVCW--SDDGSKVFTASCDKTAKMWDLSSNQAIQI------------------------------------ 123 (368)
T ss_dssp -----SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEE------------------------------------
T ss_pred -----CCEEEEEE--CcCCCEEEEEcCCCcEEEEEcCCCCceee------------------------------------
Confidence 88999999 55778999999999999999988763221
Q ss_pred cccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEE--CCCCCEEEEe-cCCeEEEEeccCC
Q 010256 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISN--NSDGETFISA-DDLRINLWNLEIS 264 (514)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~l~s~-~d~~i~iwd~~~~ 264 (514)
..|...|.+++| +|++++|+++ .|+.|++||+++.
T Consensus 124 ------------------------------------------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 161 (368)
T 3mmy_A 124 ------------------------------------------AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS 161 (368)
T ss_dssp ------------------------------------------EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS
T ss_pred ------------------------------------------ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC
Confidence 346688999999 8999999999 8999999999876
Q ss_pred CceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccce
Q 010256 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (514)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 344 (514)
+.... +.. ...+.++.+.+ ..+++++.++.+++|+++....... ... ..+...+
T Consensus 162 ~~~~~--------~~~-~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~---~~~-----------~~~~~~~ 215 (368)
T 3mmy_A 162 NPMMV--------LQL-PERCYCADVIY---PMAVVATAERGLIVYQLENQPSEFR---RIE-----------SPLKHQH 215 (368)
T ss_dssp SCSEE--------EEC-SSCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEE---ECC-----------CSCSSCE
T ss_pred cEEEE--------Eec-CCCceEEEecC---CeeEEEeCCCcEEEEEeccccchhh---hcc-----------ccccCCC
Confidence 54432 222 34566777665 4688889999999999987643211 111 1122356
Q ss_pred eEEEEecCCCE----EEEEe-CCeEEEEEccCCC---CceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEE
Q 010256 345 SDIKFARNGRH----ILSRD-YMTLKLWDINMDS---GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 416 (514)
Q Consensus 345 ~~~~~s~~g~~----l~~~~-~~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 416 (514)
..+.+.++... +++++ ++.|++||++. . ..+..+..|......... ......|.+++|+|++++|+++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~sp~~~~l~s~ 291 (368)
T 3mmy_A 216 RCVAIFKDKQNKPTGFALGSIEGRVAIHYINP-PNPAKDNFTFKCHRSNGTNTSA---PQDIYAVNGIAFHPVHGTLATV 291 (368)
T ss_dssp EEEEEEECTTSCEEEEEEEETTSEEEEEESSC-SCHHHHSEEEECSEEC----CC---CEEECCEEEEEECTTTCCEEEE
T ss_pred ceEEEcccCCCCCCeEEEecCCCcEEEEecCC-CCccccceeeeeeecccccccc---cccccceEEEEEecCCCEEEEE
Confidence 66777665554 77765 49999999986 4 445666666542110000 0011125599999999999999
Q ss_pred eCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 417 SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 417 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+.||.|++||+.+++ ....+.+|..+|.+++|+|++++|++++.|+..+.
T Consensus 292 ~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~ 341 (368)
T 3mmy_A 292 GSDGRFSFWDKDART-KLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKG 341 (368)
T ss_dssp ETTSCEEEEETTTTE-EEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTC
T ss_pred ccCCeEEEEECCCCc-EEEEecCCCCCceEEEECCCCCeEEEEeccccccc
Confidence 999999999999874 45788899999999999999999999999886555
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-33 Score=258.28 Aligned_cols=273 Identities=14% Similarity=0.184 Sum_probs=204.7
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|++++|+|++++||+|+.||.|++|++.++.. ..+....+.+|.
T Consensus 7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-------------------~~~~~~~~~~~~---------- 57 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS-------------------NWELSDSWRAHD---------- 57 (351)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSC-------------------CEEEEEEEECCS----------
T ss_pred CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC-------------------cceecceeccCC----------
Confidence 358999999999999999999999999999999986542 223556678888
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|.+++|+|..++.+|++++.||.|++||+.+++.... +
T Consensus 58 --~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~-------------------------------~------- 97 (351)
T 3f3f_A 58 --SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECS-------------------------------G------- 97 (351)
T ss_dssp --SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTS-------------------------------S-------
T ss_pred --CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccccc-------------------------------c-------
Confidence 889999997643678999999999999999987531000 0
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC--CCEEEEe-cCCeEEEEeccCCCce
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA-DDLRINLWNLEISNQS 267 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~~~ 267 (514)
.. ...... +..|...|.+++|+|+ +++|+++ .|+.|++||+++.+..
T Consensus 98 --------------~~---------------~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 147 (351)
T 3f3f_A 98 --------------RR---------------WNKLCT-LNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDL 147 (351)
T ss_dssp --------------CS---------------EEEEEE-ECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCT
T ss_pred --------------cC---------------cceeee-ecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHh
Confidence 00 001111 2578899999999999 9999999 9999999999866543
Q ss_pred eeee-----ccCCCcccccCCceEEEEEecC---CCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeec
Q 010256 268 FNIV-----DVKPANMEDLTEVITSAEFHPT---HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 339 (514)
Q Consensus 268 ~~~~-----~~~~~~~~~~~~~i~~v~~~p~---~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (514)
..+. .........+...+.+++|+|+ + .++++++.++.+.+|+...+.... ...+.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~ 212 (351)
T 3f3f_A 148 RSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSP-EKLAVSALEQAIIYQRGKDGKLHV--------------AAKLPG 212 (351)
T ss_dssp TCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSC-CEEEEEETTEEEEEEECTTSCEEE--------------EEECCC
T ss_pred ccccccccccccccccCCcccceeEEEeccCCCCC-cEEEEecCCCcEEEEccCCCceee--------------eeecCC
Confidence 2110 0011122357888999999997 6 899999999999888876654310 112455
Q ss_pred cccceeEEEEecCC----CEEEEEe-CCeEEEEEccCCC-----------------------------------------
Q 010256 340 IIASISDIKFARNG----RHILSRD-YMTLKLWDINMDS----------------------------------------- 373 (514)
Q Consensus 340 ~~~~i~~~~~s~~g----~~l~~~~-~~~i~iwd~~~~~----------------------------------------- 373 (514)
|...|.+++|+|++ ++|++++ |+.|++||++...
T Consensus 213 h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (351)
T 3f3f_A 213 HKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQS 292 (351)
T ss_dssp CCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CC
T ss_pred CCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecc
Confidence 77899999999998 7888876 4999999998621
Q ss_pred ----CceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCce
Q 010256 374 ----GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (514)
Q Consensus 374 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 432 (514)
+.+..+.+|.. .|++++|+|++++|++++.||.|++|++.+++.
T Consensus 293 ~~~~~~~~~~~~h~~---------------~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 293 NLQVELLSEHDDHNG---------------EVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp SEEEEEEEEECTTSS---------------CEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred cccccEEEEEecccc---------------cEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence 12222222222 356999999999999999999999999998744
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-34 Score=277.33 Aligned_cols=292 Identities=10% Similarity=0.074 Sum_probs=204.0
Q ss_pred ccccceEEEEEcCC------CCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccc
Q 010256 33 QEVDIISAIEFDKS------GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYL 106 (514)
Q Consensus 33 ~h~~~V~~~~~s~~------g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 106 (514)
.|.+.|++++|+|+ +.+||+|+.||+|+|||+.+++..... .+ ........+.+|.
T Consensus 205 ~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~--~~----------~~~~p~~~l~~h~------ 266 (524)
T 2j04_B 205 HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHV--FK----------MCEKPSLTLSLAD------ 266 (524)
T ss_dssp ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSE--EE----------CCCSCSEEECCTT------
T ss_pred ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccc--ce----------eecCceEEEEcCC------
Confidence 56789999999997 579999999999999999765421000 00 0001223567787
Q ss_pred cccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcc
Q 010256 107 KSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (514)
Q Consensus 107 ~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 186 (514)
..|++++|++ + ..|++|+.||+|++||+++++.
T Consensus 267 ------~~v~sv~~s~--~-~~lasgs~DgtV~lWD~~~~~~-------------------------------------- 299 (524)
T 2j04_B 267 ------SLITTFDFLS--P-TTVVCGFKNGFVAEFDLTDPEV-------------------------------------- 299 (524)
T ss_dssp ------TCEEEEEESS--S-SEEEEEETTSEEEEEETTBCSS--------------------------------------
T ss_pred ------CCEEEEEecC--C-CeEEEEeCCCEEEEEECCCCCC--------------------------------------
Confidence 8899999953 3 4899999999999999975420
Q ss_pred ccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEE--EECCCC-CEEEEe-cCCeEEEEecc
Q 010256 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSI--SNNSDG-ETFISA-DDLRINLWNLE 262 (514)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~-~~l~s~-~d~~i~iwd~~ 262 (514)
+ ...+.+|...|.++ +|+|++ ++|++| .|++|++||++
T Consensus 300 -------------------------------------~-~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~ 341 (524)
T 2j04_B 300 -------------------------------------P-SFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPK 341 (524)
T ss_dssp -------------------------------------C-SEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGG
T ss_pred -------------------------------------c-eEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECC
Confidence 0 00026788999999 578887 899999 99999999998
Q ss_pred CCCceeeeeccCCCcccccC--CceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecc
Q 010256 263 ISNQSFNIVDVKPANMEDLT--EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 340 (514)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~--~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (514)
+.+... .+.+|. ..|.+++|+|++ ..|++++.|+.|++||++++... . .+.+|
T Consensus 342 ~~~~~~--------~~~~~~~~~~v~~v~fsp~~-~~l~s~~~d~tv~lwd~~~~~~~----~------------~l~gH 396 (524)
T 2j04_B 342 DIATTK--------TTVSRFRGSNLVPVVYCPQI-YSYIYSDGASSLRAVPSRAAFAV----H------------PLVSR 396 (524)
T ss_dssp GHHHHC--------EEEEECSCCSCCCEEEETTT-TEEEEECSSSEEEEEETTCTTCC----E------------EEEEC
T ss_pred CCCccc--------ccccccccCcccceEeCCCc-CeEEEeCCCCcEEEEECcccccc----e------------eeecC
Confidence 654332 223343 347899999998 78999999999999999986642 1 24567
Q ss_pred ccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCC
Q 010256 341 IASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS 419 (514)
Q Consensus 341 ~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 419 (514)
.+.|++++|+|+|++|++|+. ++|++||+.. +.+.......... ....+++++|+|+++.+. ...
T Consensus 397 ~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~--~~~~~~~~~~~~~----------~~~~v~~v~~sp~g~~~~-~~~- 462 (524)
T 2j04_B 397 ETTITAIGVSRLHPMVLAGSADGSLIITNAAR--RLLHGIKNSSATQ----------KSLRLWKWDYSIKDDKYR-IDS- 462 (524)
T ss_dssp SSCEEEEECCSSCCBCEEEETTTEEECCBSCS--STTTCC------C----------CCCEEEECBCCSSSCEEE-ECC-
T ss_pred CCceEEEEeCCCCCeEEEEECCCEEEEEechH--hhccccccCccce----------eeeEEEEeccCCCCCeEE-ccC-
Confidence 789999999999999999865 9999999864 3333221111000 001145889999999653 222
Q ss_pred CcEEEEecCCCceeeeeecCCCcceeEEEECCCCC---ceeecCCCCeEEE
Q 010256 420 NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP---SRPLGSLSGVVRR 467 (514)
Q Consensus 420 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~s~s~d~~v~i 467 (514)
.+.+|+.........++.+|..+|.+++|+|+++ ++|+|+.||.|||
T Consensus 463 -~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrl 512 (524)
T 2j04_B 463 -SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTL 512 (524)
T ss_dssp -CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEE
T ss_pred -CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEE
Confidence 2334443311234478899999999999999965 9999999999999
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-32 Score=248.60 Aligned_cols=283 Identities=15% Similarity=0.170 Sum_probs=222.8
Q ss_pred cceeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCccee
Q 010256 89 EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIF 168 (514)
Q Consensus 89 ~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~ 168 (514)
.++....+.+|. +.|++++| | ++.+|++++.||.|++||+.+++....
T Consensus 7 ~~~~~~~l~~h~------------~~v~~~~~-~--~~~~l~s~~~dg~v~vw~~~~~~~~~~----------------- 54 (313)
T 3odt_A 7 GYQLSATLKGHD------------QDVRDVVA-V--DDSKVASVSRDGTVRLWSKDDQWLGTV----------------- 54 (313)
T ss_dssp CCEEEEEECCCS------------SCEEEEEE-E--ETTEEEEEETTSEEEEEEESSSEEEEE-----------------
T ss_pred cHHHHHHhhCCC------------CCcEEEEe-c--CCCEEEEEEcCCcEEEEECCCCEEEEE-----------------
Confidence 445677889998 89999999 4 456899999999999999977653221
Q ss_pred cccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEE
Q 010256 169 GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF 248 (514)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 248 (514)
...|...|.+++|+|++++|
T Consensus 55 ------------------------------------------------------------~~~~~~~v~~~~~~~~~~~l 74 (313)
T 3odt_A 55 ------------------------------------------------------------VYTGQGFLNSVCYDSEKELL 74 (313)
T ss_dssp ------------------------------------------------------------EEECSSCEEEEEEETTTTEE
T ss_pred ------------------------------------------------------------eecCCccEEEEEECCCCCEE
Confidence 14566889999999999999
Q ss_pred EEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceec
Q 010256 249 ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 327 (514)
Q Consensus 249 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 327 (514)
+++ .|+.|++|++........+ ..+..|...|.++.| ++ .++++++.|+.|++|| .+.. ..
T Consensus 75 ~~~~~dg~i~~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~--~~-~~l~~~~~d~~i~~~d--~~~~----~~---- 136 (313)
T 3odt_A 75 LFGGKDTMINGVPLFATSGEDPL-----YTLIGHQGNVCSLSF--QD-GVVISGSWDKTAKVWK--EGSL----VY---- 136 (313)
T ss_dssp EEEETTSCEEEEETTCCTTSCC------CEECCCSSCEEEEEE--ET-TEEEEEETTSEEEEEE--TTEE----EE----
T ss_pred EEecCCCeEEEEEeeecCCCCcc-----cchhhcccCEEEEEe--cC-CEEEEEeCCCCEEEEc--CCcE----EE----
Confidence 999 9999999999755322111 245778999999999 34 6899999999999999 2222 12
Q ss_pred cCCCCccceeeccccceeEEEEec-CCCEEEEEeC-CeEEEEEccCCCCceeeeee-ccccccccccccccCCccceeeE
Q 010256 328 QEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY-MTLKLWDINMDSGPVATFQV-HEHLRPKLCDLYENDSIFDKFEC 404 (514)
Q Consensus 328 ~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~ 404 (514)
.+..|...+.+++|+| ++.++++++. +.|++||. .+....+.. |... +.++
T Consensus 137 --------~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~---~~~~~~~~~~~~~~---------------i~~~ 190 (313)
T 3odt_A 137 --------NLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN---DKVIKTFSGIHNDV---------------VRHL 190 (313)
T ss_dssp --------EEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET---TEEEEEECSSCSSC---------------EEEE
T ss_pred --------ecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec---CceEEEEeccCccc---------------EEEE
Confidence 2445668899999998 8999998765 99999993 445555554 3332 4489
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccc
Q 010256 405 CLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFD 484 (514)
Q Consensus 405 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~ 484 (514)
+|+|++. +++++.||.|++||+.+++ ....+.+|..++.+++|+|++ .+++++.|+.|++++- ...........
T Consensus 191 ~~~~~~~-~~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~---~~~~~~~~~~~ 264 (313)
T 3odt_A 191 AVVDDGH-FISCSNDGLIKLVDMHTGD-VLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSK---ENGSLKQVITL 264 (313)
T ss_dssp EEEETTE-EEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECT---TTCCEEEEEEC
T ss_pred EEcCCCe-EEEccCCCeEEEEECCchh-hhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEEC---CCCceeEEEec
Confidence 9999998 8899999999999999874 447888999999999999999 6899999999999432 22122223335
Q ss_pred cccceEEEEEcCCCCEEEEEecCcEEEEe
Q 010256 485 FSMKLLHLAWHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 485 ~~~~v~~~~~spd~~~l~~~~~~~~~i~~ 513 (514)
|...|.+++|+|++++++++.++.+.+|.
T Consensus 265 ~~~~i~~~~~~~~~~~~~~~~dg~i~iw~ 293 (313)
T 3odt_A 265 PAISIWSVDCMSNGDIIVGSSDNLVRIFS 293 (313)
T ss_dssp SSSCEEEEEECTTSCEEEEETTSCEEEEE
T ss_pred cCceEEEEEEccCCCEEEEeCCCcEEEEe
Confidence 77899999999999988777788999996
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-33 Score=259.30 Aligned_cols=247 Identities=13% Similarity=0.122 Sum_probs=185.7
Q ss_pred cCccCeEEEEECCC---CCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEE------ecCCCcEEEE
Q 010256 231 AHDYHINSISNNSD---GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF------HPTHCNMLAY 300 (514)
Q Consensus 231 ~h~~~v~~~~~~~~---~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~------~p~~~~~l~~ 300 (514)
+|...|.+++|+|+ +++|+++ .|+.|++||+++.+.... .+.+|...|.++.| +|++ ++|++
T Consensus 63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~s~~~-~~l~~ 134 (357)
T 3i2n_A 63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVY-------SVKGHKEIINAIDGIGGLGIGEGA-PEIVT 134 (357)
T ss_dssp EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSE-------EECCCSSCEEEEEEESGGGCC-CC-CEEEE
T ss_pred cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEE-------EEEecccceEEEeeccccccCCCc-cEEEE
Confidence 56788999999998 6999999 899999999997662322 45679999999965 5787 89999
Q ss_pred EecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEE----EecCCCEEEEEeC-CeEEEEEccCCCCc
Q 010256 301 SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK----FARNGRHILSRDY-MTLKLWDINMDSGP 375 (514)
Q Consensus 301 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~s~~g~~l~~~~~-~~i~iwd~~~~~~~ 375 (514)
++.||.|++||++++... ...+..+.. .+...+.+++ |+|+++++++++. +.|++||++. ++.
T Consensus 135 ~~~d~~i~vwd~~~~~~~---~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~ 202 (357)
T 3i2n_A 135 GSRDGTVKVWDPRQKDDP---VANMEPVQG--------ENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRN-MAL 202 (357)
T ss_dssp EETTSCEEEECTTSCSSC---SEEECCCTT--------SCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTT-TEE
T ss_pred EeCCCeEEEEeCCCCCCc---ceeccccCC--------CCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECcc-Cce
Confidence 999999999999987632 233332211 0123788888 7889999999875 9999999986 544
Q ss_pred eeeeeeccccccccccccccCCccceeeEEEcC---CCCEEEEEeCCCcEEEEecCCCceee----eeecCCCcceeEEE
Q 010256 376 VATFQVHEHLRPKLCDLYENDSIFDKFECCLSG---DGGRVATGSYSNLFRVFGCSEGSAES----TTLEASKNPMRRQV 448 (514)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~v~~~~ 448 (514)
.. ...|... +.+++|+| ++++|++++.||.|++||+.++.... ..+.+|...|.++.
T Consensus 203 ~~-~~~~~~~---------------v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~ 266 (357)
T 3i2n_A 203 RW-ETNIKNG---------------VCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVR 266 (357)
T ss_dssp EE-EEECSSC---------------EEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEE
T ss_pred ee-ecCCCCc---------------eEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEE
Confidence 32 3334332 44999999 99999999999999999998753321 12348999999999
Q ss_pred ECCCCC-ceeecCCCCeEEEeeCCCCCcc----------------ccCCcccccccceEEEEEcCCCCEEE-EEe-cCcE
Q 010256 449 QTPSRP-SRPLGSLSGVVRRVKGADNSAL----------------DANGNAFDFSMKLLHLAWHPSENSIA-CAA-SNSL 509 (514)
Q Consensus 449 ~~~~~~-~l~s~s~d~~v~i~~~~~~~~~----------------~~~~~~~~~~~~v~~~~~spd~~~l~-~~~-~~~~ 509 (514)
|+|+++ ++++++.|+.|++++-...... ........|...|++++|+|++++|+ +++ ++.+
T Consensus 267 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i 346 (357)
T 3i2n_A 267 HLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTV 346 (357)
T ss_dssp EETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEE
T ss_pred ECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcE
Confidence 999999 8999999999999322111100 01112335889999999999999998 576 6788
Q ss_pred EEEe
Q 010256 510 YMYY 513 (514)
Q Consensus 510 ~i~~ 513 (514)
++|.
T Consensus 347 ~iw~ 350 (357)
T 3i2n_A 347 RVLI 350 (357)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8886
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-34 Score=268.54 Aligned_cols=243 Identities=12% Similarity=0.095 Sum_probs=183.7
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
+.|++++| ++++++|++++.|+.|++||+.++.....
T Consensus 12 ~~v~~~~~--s~~g~~l~~~~~d~~i~iw~~~~~~~~~~----------------------------------------- 48 (377)
T 3dwl_C 12 KPSYEHAF--NSQRTEFVTTTATNQVELYEQDGNGWKHA----------------------------------------- 48 (377)
T ss_dssp SCCSCCEE--CSSSSEEECCCSSSCBCEEEEETTEEEEC-----------------------------------------
T ss_pred CcEEEEEE--CCCCCEEEEecCCCEEEEEEccCCceEEE-----------------------------------------
Confidence 67999999 55778999999999999999876531110
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
.. +.+|...|.+++|+|++++|+++ .|++|++||+++.+.....
T Consensus 49 ---------------------------------~~-~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~- 93 (377)
T 3dwl_C 49 ---------------------------------RT-FSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQT- 93 (377)
T ss_dssp ---------------------------------CC-BCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCE-
T ss_pred ---------------------------------EE-EecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeee-
Confidence 01 25788999999999999999999 8999999999866511111
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeec-cccceeEEEEe
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE-IIASISDIKFA 350 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s 350 (514)
..+..|...|.+++|+|++ ++|++++.|+.|++||+++++.... .+ .+.+ |...|.+++|+
T Consensus 94 ----~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~-~~------------~~~~~h~~~v~~~~~~ 155 (377)
T 3dwl_C 94 ----LVLLRLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQENDWWV-SK------------HLKRPLRSTILSLDWH 155 (377)
T ss_dssp ----EECCCCSSCEEEEECCTTS-SCCEEEESSSCEEECCC-----CCC-CE------------EECSSCCSCEEEEEEC
T ss_pred ----eEecccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCccccee-ee------------EeecccCCCeEEEEEc
Confidence 1456789999999999998 8999999999999999988653100 11 1333 66899999999
Q ss_pred cCCCEEEEEeC-CeEEEEEccCC-----------------CCceeeeeeccccccccccccccCCccceeeEEEcCCCCE
Q 010256 351 RNGRHILSRDY-MTLKLWDINMD-----------------SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR 412 (514)
Q Consensus 351 ~~g~~l~~~~~-~~i~iwd~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 412 (514)
|++++|++++. +.|++||+... ++++..+ .|.. .|.+++|+|++++
T Consensus 156 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---------------~v~~~~~sp~~~~ 219 (377)
T 3dwl_C 156 PNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG---------------WVHAVGFSPSGNA 219 (377)
T ss_dssp TTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS---------------SEEEEEECTTSSC
T ss_pred CCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc---------------eEEEEEECCCCCE
Confidence 99999999764 99999999631 1111222 2222 2559999999999
Q ss_pred EEEEeCCCcEEEEecCCCcee---eeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 413 VATGSYSNLFRVFGCSEGSAE---STTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 413 l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
|++++.||.|++||+.+++.. ...+.+|..++.+++|+|++++|++++.|+.+.+
T Consensus 220 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 277 (377)
T 3dwl_C 220 LAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILL 277 (377)
T ss_dssp EEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEE
T ss_pred EEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEE
Confidence 999999999999999987551 4778899999999999999999999998888866
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=262.82 Aligned_cols=269 Identities=13% Similarity=0.263 Sum_probs=220.4
Q ss_pred ccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccc
Q 010256 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (514)
+|...|.|++| ++++|++|+.||.|++||+.+++ ....+.+|.
T Consensus 131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~-----------------------~~~~~~~h~------------ 173 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE-----------------------CKRILTGHT------------ 173 (435)
T ss_dssp SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC-----------------------EEEEECCCS------------
T ss_pred CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCe-----------------------EEEEEcCCC------------
Confidence 56778999887 79999999999999999987665 446678888
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
..|.+++| ++.++++|+.||.|++||+.+++....
T Consensus 174 ~~v~~l~~----~~~~l~sg~~dg~i~vwd~~~~~~~~~----------------------------------------- 208 (435)
T 1p22_A 174 GSVLCLQY----DERVIITGSSDSTVRVWDVNTGEMLNT----------------------------------------- 208 (435)
T ss_dssp SCEEEEEC----CSSEEEEEETTSCEEEEESSSCCEEEE-----------------------------------------
T ss_pred CcEEEEEE----CCCEEEEEcCCCeEEEEECCCCcEEEE-----------------------------------------
Confidence 88999998 456999999999999999987753221
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
+.+|...|.+++|++ ..+++| .|+.|++||+++.......
T Consensus 209 ------------------------------------~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~- 249 (435)
T 1p22_A 209 ------------------------------------LIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLR- 249 (435)
T ss_dssp ------------------------------------ECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEE-
T ss_pred ------------------------------------EcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceee-
Confidence 145778899999974 588888 9999999999866543211
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
..+.+|...|.+++| ++ +++++|+.||.|++||+++++.. .. +.+|...|.+++|+
T Consensus 250 ----~~~~~~~~~v~~~~~--~~-~~l~s~~~dg~i~vwd~~~~~~~----~~------------~~~~~~~v~~~~~~- 305 (435)
T 1p22_A 250 ----RVLVGHRAAVNVVDF--DD-KYIVSASGDRTIKVWNTSTCEFV----RT------------LNGHKRGIACLQYR- 305 (435)
T ss_dssp ----EEECCCSSCEEEEEE--ET-TEEEEEETTSEEEEEETTTCCEE----EE------------EECCSSCEEEEEEE-
T ss_pred ----eEecCCCCcEEEEEe--CC-CEEEEEeCCCeEEEEECCcCcEE----EE------------EcCCCCcEEEEEeC-
Confidence 145678999999999 45 79999999999999999987652 22 44566789999985
Q ss_pred CCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 352 NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 352 ~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
+.++++|+ |+.|++||+++ ++++..+.+|... |.+++| ++++|++|+.||.|++||+.++
T Consensus 306 -~~~l~~g~~dg~i~iwd~~~-~~~~~~~~~h~~~---------------v~~~~~--~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 306 -DRLVVSGSSDNTIRLWDIEC-GACLRVLEGHEEL---------------VRCIRF--DNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp -TTEEEEEETTSCEEEEETTT-CCEEEEECCCSSC---------------EEEEEC--CSSEEEEEETTSCEEEEEHHHH
T ss_pred -CCEEEEEeCCCeEEEEECCC-CCEEEEEeCCcCc---------------EEEEEe--cCCEEEEEeCCCcEEEEECCCC
Confidence 67888876 59999999997 8888888887755 337777 7899999999999999998754
Q ss_pred ce--------eeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 431 SA--------ESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 431 ~~--------~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.. ....+.+|..+|.++.+ ++++|++++.||.|++
T Consensus 367 ~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~i 409 (435)
T 1p22_A 367 LDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILI 409 (435)
T ss_dssp TSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEE
T ss_pred CCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEE
Confidence 31 44778899999999999 7889999999999999
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=256.18 Aligned_cols=248 Identities=19% Similarity=0.315 Sum_probs=202.9
Q ss_pred cccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccc
Q 010256 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (514)
.+|.+.|+||+|+|+|++||+|+.||.|+|||+.+++ .+..+.+|.
T Consensus 144 ~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~-----------------------~~~~~~~h~----------- 189 (420)
T 4gga_A 144 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-----------------------RLRNMTSHS----------- 189 (420)
T ss_dssp CSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----------------------EEEEECCCS-----------
T ss_pred cCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc-----------------------EEEEEeCCC-----------
Confidence 3688899999999999999999999999999998766 446788888
Q ss_pred ccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
..|.++.|. +.++++++.|+.+++||........
T Consensus 190 -~~v~~~s~~----~~~l~sgs~d~~i~~~d~~~~~~~~----------------------------------------- 223 (420)
T 4gga_A 190 -ARVGSLSWN----SYILSSGSRSGHIHHHDVRVAEHHV----------------------------------------- 223 (420)
T ss_dssp -SCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEE-----------------------------------------
T ss_pred -CceEEEeeC----CCEEEEEeCCCceeEeeecccceee-----------------------------------------
Confidence 789998883 3589999999999999987542100
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeee
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 270 (514)
.. +.+|...+..+.++|++++++++ .|+.+++|+...++.....
T Consensus 224 ----------------------------------~~-~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~ 268 (420)
T 4gga_A 224 ----------------------------------AT-LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP 268 (420)
T ss_dssp ----------------------------------EE-EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCC
T ss_pred ----------------------------------EE-ecccccceeeeeecCCCCeeeeeeccccceEEeecccccccee
Confidence 00 25788899999999999999999 9999999999866533211
Q ss_pred eccCCCcccccCCceEEEEEecCCCcEEEEE--ecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEE
Q 010256 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYS--SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (514)
Q Consensus 271 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~--~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (514)
......|...|.+++|+|.+..+++++ +.|+.|++||++++... ..+..+ ..+.++.
T Consensus 269 ----~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~----~~~~~~-------------~~v~~~~ 327 (420)
T 4gga_A 269 ----LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL----SAVDAH-------------SQVCSIL 327 (420)
T ss_dssp ----SEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEE----EEEECS-------------SCEEEEE
T ss_pred ----eeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccc----eeeccc-------------cceeeee
Confidence 113466889999999999887787764 47999999999998763 222222 4689999
Q ss_pred EecCCCEEEEEe---CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEE
Q 010256 349 FARNGRHILSRD---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 425 (514)
Q Consensus 349 ~s~~g~~l~~~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 425 (514)
|+|+++.+++++ ++.|+|||+.+ ++++.++.+|... |++++|+|||++|++|+.|++|+||
T Consensus 328 ~~~~~~~lv~~sg~~d~~I~iwd~~~-~~~v~~l~gH~~~---------------V~~l~~spdg~~l~S~s~D~tvriW 391 (420)
T 4gga_A 328 WSPHYKELISGHGFAQNQLVIWKYPT-MAKVAELKGHTSR---------------VLSLTMSPDGATVASAAADETLRLW 391 (420)
T ss_dssp EETTTTEEEEEECTTTCCEEEEETTT-CCEEEEECCCSSC---------------EEEEEECTTSSCEEEEETTTEEEEE
T ss_pred ecCCCCeEEEEEecCCCEEEEEECCC-CcEEEEEcCCCCC---------------EEEEEEcCCCCEEEEEecCCeEEEE
Confidence 999999998753 59999999997 8999999998765 4599999999999999999999999
Q ss_pred ecCCCc
Q 010256 426 GCSEGS 431 (514)
Q Consensus 426 d~~~~~ 431 (514)
|+....
T Consensus 392 dv~~~~ 397 (420)
T 4gga_A 392 RCFELD 397 (420)
T ss_dssp CCSCSS
T ss_pred ECCCCC
Confidence 997653
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=254.78 Aligned_cols=278 Identities=14% Similarity=0.062 Sum_probs=202.1
Q ss_pred EEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEEEe
Q 010256 42 EFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWC 121 (514)
Q Consensus 42 ~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~ 121 (514)
.+.+++.+|++|+.||.|++||+.+++.. ..+. . ..|.++.|+
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~-----------------------~~~~--~------------~~v~~~~~~ 85 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTI-----------------------TTIT--T------------PNPRTGGEH 85 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCE-----------------------EEEE--E------------ECCCTTCCC
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEE-----------------------EEEe--c------------CCceeeeeC
Confidence 44468889999999999999999877642 2222 1 457777885
Q ss_pred eCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCC
Q 010256 122 QSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPP 201 (514)
Q Consensus 122 ~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 201 (514)
|. +++++.|++|++|+.......
T Consensus 86 ~~-----~~s~s~D~~i~~w~~~~~~~~---------------------------------------------------- 108 (343)
T 3lrv_A 86 PA-----IISRGPCNRLLLLYPGNQITI---------------------------------------------------- 108 (343)
T ss_dssp CS-----EEEECSTTEEEEEETTTEEEE----------------------------------------------------
T ss_pred Cc-----eEEecCCCeEEEEEccCceEE----------------------------------------------------
Confidence 43 899999999999998753211
Q ss_pred CCCCcEEeceeeccccccccccccccccccCccCeEEEEECC--CCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcc
Q 010256 202 GGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANM 278 (514)
Q Consensus 202 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 278 (514)
|+ ... ....+.+..+|...|.+++|+| ++++|+++ .|++|++||+++++.. .. ..
T Consensus 109 --------~~----~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-~~------~~ 166 (343)
T 3lrv_A 109 --------LD----SKT---NKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQY-IV------HS 166 (343)
T ss_dssp --------EE----TTT---CCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEE-EE------EC
T ss_pred --------ee----cCC---cceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEE-EE------Ee
Confidence 11 000 0011112246778999999999 99999999 9999999999966542 22 11
Q ss_pred cccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeec-cccceeEEEEecCCCEEE
Q 010256 279 EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE-IIASISDIKFARNGRHIL 357 (514)
Q Consensus 279 ~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~g~~l~ 357 (514)
..+...+.+++|+|++ .+|++|+.||.|++||+++++.. ... +.. |.++|.+++|+|+|.+|+
T Consensus 167 ~~~~~~i~~~~~~pdg-~~lasg~~dg~i~iwd~~~~~~~---~~~------------~~~~h~~~v~~l~fs~~g~~l~ 230 (343)
T 3lrv_A 167 AKSDVEYSSGVLHKDS-LLLALYSPDGILDVYNLSSPDQA---SSR------------FPVDEEAKIKEVKFADNGYWMV 230 (343)
T ss_dssp CCSSCCCCEEEECTTS-CEEEEECTTSCEEEEESSCTTSC---CEE------------CCCCTTSCEEEEEECTTSSEEE
T ss_pred cCCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCCCC---ccE------------EeccCCCCEEEEEEeCCCCEEE
Confidence 2355679999999999 89999999999999999987652 022 333 668999999999999999
Q ss_pred EEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeC-CCcEEEEecCCCceeeee
Q 010256 358 SRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SNLFRVFGCSEGSAESTT 436 (514)
Q Consensus 358 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~ 436 (514)
+++++.|++||++. .+.+..+..+......+. . .+++|+|+|++|++++. |+.+++|++........
T Consensus 231 s~~~~~v~iwd~~~-~~~~~~~~~~~~~~~~~~---------~-~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~- 298 (343)
T 3lrv_A 231 VECDQTVVCFDLRK-DVGTLAYPTYTIPEFKTG---------T-VTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWT- 298 (343)
T ss_dssp EEESSBEEEEETTS-STTCBSSCCCBC-----C---------C-EEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEE-
T ss_pred EEeCCeEEEEEcCC-CCcceeeccccccccccc---------c-eEEEECCCCCEEEEecCCCCcEEEEEEcccccceE-
Confidence 98888999999997 665555443211110000 0 25999999999999998 99999999976533211
Q ss_pred ecCCCcceeEEEECC---CCCceeecCCCCeEEE
Q 010256 437 LEASKNPMRRQVQTP---SRPSRPLGSLSGVVRR 467 (514)
Q Consensus 437 ~~~~~~~v~~~~~~~---~~~~l~s~s~d~~v~i 467 (514)
. .++..+.|.+ +.+.+++++.|+.+++
T Consensus 299 ~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~ 328 (343)
T 3lrv_A 299 K----DEESALCLQSDTADFTDMDVVCGDGGIAA 328 (343)
T ss_dssp E----EEEEECCC----CCCCEEEEEEETTEEEE
T ss_pred e----cCceeEecCccccccceeEEEecCCceEE
Confidence 1 5667788888 8889999999999988
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=265.79 Aligned_cols=288 Identities=8% Similarity=0.065 Sum_probs=207.1
Q ss_pred ccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
...|.+++| ++||+++|+++.|++|+ |...++.. .. +...++ .++|+|+|.
T Consensus 15 ~~~v~sv~~--SpDG~~iASas~D~TV~--d~~~~~~l---~g--------h~~~v~-------~V~FsPdg~------- 65 (588)
T 2j04_A 15 EDWKNNLTW--ARDGTLYLTTFPDISIG--QPKYAKDI---NC--------NSKNLF-------HVKEFPLEF------- 65 (588)
T ss_dssp SSSSCCEEE--CTTSCEEEECSSSEEEE--EECCCSCC---SS--------BGGGTE-------EEEEECCCC-------
T ss_pred hccEEEEEE--CCCCCEEEEEcCCceee--ccccccee---cC--------CCccEE-------EEEECCCCC-------
Confidence 378999999 78999999999999999 65444321 11 134455 888999883
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeee
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 270 (514)
++.+.+|+ .+. ...+...|...|.+++|+|+|++||++ .||.|++||.+. ...
T Consensus 66 ------------~~~~~~~~----~~~------~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---~l~- 119 (588)
T 2j04_A 66 ------------ENKLDFEL----AQQ------NGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---MLT- 119 (588)
T ss_dssp ------------CCTTTTSC----CCS------SCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE---EEE-
T ss_pred ------------cceEEEEe----CCC------ceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc---eee-
Confidence 23344333 221 112223567899999999999999999 999999999642 222
Q ss_pred eccCCCcccccCC-----ceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccc---cccceeccCCCCccceeecccc
Q 010256 271 VDVKPANMEDLTE-----VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT---HSKLFEEQEAPGTRSFFTEIIA 342 (514)
Q Consensus 271 ~~~~~~~~~~~~~-----~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 342 (514)
.+. |.. .+.+++|+|+| ++|++|+.||+|++||+.++..... .+.+++.+ ..+|.+
T Consensus 120 ------~l~-~~~~~~~~sv~svafSPDG-~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~--------~~gh~~ 183 (588)
T 2j04_A 120 ------NLD-SKGNLSSRTYHCFEWNPIE-SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLS--------DAGSKD 183 (588)
T ss_dssp ------ECC-CSSCSTTTCEEEEEECSSS-SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECS--------CTTCCC
T ss_pred ------ecc-CCCccccccEEEEEEcCCC-CEEEEEcCCCEEEEEECCCCccccccceeeeeeecc--------cccccc
Confidence 233 333 59999999999 8999999999999999988653110 02233222 245678
Q ss_pred ceeEEEEecCCCEEEEEeCCeEEEEEccCCCCc---eeeee-eccccccccccccccCCccceeeEEEcCCCCEEEEEeC
Q 010256 343 SISDIKFARNGRHILSRDYMTLKLWDINMDSGP---VATFQ-VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 418 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 418 (514)
.|.+++|+|+| +++++.|++|++||+.. +.. ..++. +|... |.+++|+ |++||+++
T Consensus 184 ~V~sVawSPdg-Laass~D~tVrlWd~~~-~~~~~~~~tL~~~h~~~---------------V~svaFs--g~~LASa~- 243 (588)
T 2j04_A 184 WVTHIVWYEDV-LVAALSNNSVFSMTVSA-SSHQPVSRMIQNASRRK---------------ITDLKIV--DYKVVLTC- 243 (588)
T ss_dssp CEEEEEEETTE-EEEEETTCCEEEECCCS-SSSCCCEEEEECCCSSC---------------CCCEEEE--TTEEEEEC-
T ss_pred cEEEEEEcCCc-EEEEeCCCeEEEEECCC-CccccceeeecccccCc---------------EEEEEEE--CCEEEEEe-
Confidence 99999999999 55556779999999986 442 23453 45433 3489999 68999887
Q ss_pred CCcEEEEecCCCceeeeeecCCCcceeEEEE--CCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcC
Q 010256 419 SNLFRVFGCSEGSAESTTLEASKNPMRRQVQ--TPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHP 496 (514)
Q Consensus 419 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 496 (514)
++.|++||+.++... ....+|...+..+.+ +|++..|+++++||+ ++.... .++++|
T Consensus 244 ~~tIkLWd~~~~~~~-~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d-------------------~~~~sp 302 (588)
T 2j04_A 244 PGYVHKIDLKNYSIS-SLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED-------------------ELHVTA 302 (588)
T ss_dssp SSEEEEEETTTTEEE-EEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS-------------------SEEEEC
T ss_pred CCeEEEEECCCCeEE-EEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec-------------------cEEECC
Confidence 699999999976432 233389999999999 999999999999999 772111 356888
Q ss_pred CCCEEEEEecCcEEEE
Q 010256 497 SENSIACAASNSLYMY 512 (514)
Q Consensus 497 d~~~l~~~~~~~~~i~ 512 (514)
|+..++++ ++.+++|
T Consensus 303 d~~l~a~~-d~~v~lW 317 (588)
T 2j04_A 303 DNIIAPYL-EKKFKKW 317 (588)
T ss_dssp CCSSHHHH-HHHHHHT
T ss_pred CceEEEEc-CCEEEEE
Confidence 88877764 4444444
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-32 Score=256.30 Aligned_cols=273 Identities=12% Similarity=0.136 Sum_probs=218.2
Q ss_pred ceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCC
Q 010256 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (514)
Q Consensus 114 ~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (514)
.+.++.| +++ .+++++.|+.|++||+.+++......... .+.+. .++|+|+++.+
T Consensus 95 ~~~~~~~--s~~--~l~~~~~d~~v~lw~~~~~~~~~~~~~~~-------~~~v~-------~v~~s~~~~~l------- 149 (401)
T 4aez_A 95 YLNLLDW--SNL--NVVAVALERNVYVWNADSGSVSALAETDE-------STYVA-------SVKWSHDGSFL------- 149 (401)
T ss_dssp TCBCEEE--CTT--SEEEEEETTEEEEEETTTCCEEEEEECCT-------TCCEE-------EEEECTTSSEE-------
T ss_pred eEEEEee--cCC--CEEEEECCCeEEEeeCCCCcEeEeeecCC-------CCCEE-------EEEECCCCCEE-------
Confidence 3556777 433 58888999999999999998776655431 23444 88999999998
Q ss_pred CCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeec
Q 010256 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (514)
Q Consensus 194 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~ 272 (514)
++++.+|.|++|| +... ..... +.+|...|.+++| +++.|+++ .|+.|++||++.......
T Consensus 150 -----~~~~~dg~i~iwd-~~~~------~~~~~-~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~--- 211 (401)
T 4aez_A 150 -----SVGLGNGLVDIYD-VESQ------TKLRT-MAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIG--- 211 (401)
T ss_dssp -----EEEETTSCEEEEE-TTTC------CEEEE-ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEE---
T ss_pred -----EEECCCCeEEEEE-CcCC------eEEEE-ecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceee---
Confidence 9999999999999 3322 22233 3689999999999 56799998 999999999985554433
Q ss_pred cCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecC
Q 010256 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (514)
Q Consensus 273 ~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 352 (514)
.+.+|...|.+++|+|++ .+|++|+.|+.|++||++++... .. +..|...|.+++|+|+
T Consensus 212 ----~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~----~~------------~~~~~~~v~~~~~~p~ 270 (401)
T 4aez_A 212 ----TLQGHSSEVCGLAWRSDG-LQLASGGNDNVVQIWDARSSIPK----FT------------KTNHNAAVKAVAWCPW 270 (401)
T ss_dssp ----EEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCSSEE----EE------------ECCCSSCCCEEEECTT
T ss_pred ----EEcCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEccCCCCCcc----EE------------ecCCcceEEEEEECCC
Confidence 456789999999999998 89999999999999999986542 22 3456688999999997
Q ss_pred CC-EEEEEe---CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEE--eCCCcEEEEe
Q 010256 353 GR-HILSRD---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG--SYSNLFRVFG 426 (514)
Q Consensus 353 g~-~l~~~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~--~~dg~i~iwd 426 (514)
+. ++++++ ++.|++||+.+ ++++..+..+.. +.+++|+|++++|+++ +.||.|++||
T Consensus 271 ~~~ll~~~~gs~d~~i~i~d~~~-~~~~~~~~~~~~----------------v~~~~~s~~~~~l~~~~g~~dg~i~v~~ 333 (401)
T 4aez_A 271 QSNLLATGGGTMDKQIHFWNAAT-GARVNTVDAGSQ----------------VTSLIWSPHSKEIMSTHGFPDNNLSIWS 333 (401)
T ss_dssp STTEEEEECCTTTCEEEEEETTT-CCEEEEEECSSC----------------EEEEEECSSSSEEEEEECTTTCEEEEEE
T ss_pred CCCEEEEecCCCCCEEEEEECCC-CCEEEEEeCCCc----------------EEEEEECCCCCeEEEEeecCCCcEEEEe
Confidence 75 555554 69999999997 777777754322 4489999999999984 4899999999
Q ss_pred cCCCceee-eeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 427 CSEGSAES-TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 427 ~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+.++.... ..+.+|...|..++|+|++++|++++.|+.|++
T Consensus 334 ~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~i 375 (401)
T 4aez_A 334 YSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKF 375 (401)
T ss_dssp EETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEE
T ss_pred cCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 99864332 457799999999999999999999999999999
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=249.12 Aligned_cols=271 Identities=12% Similarity=0.062 Sum_probs=208.6
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
+.|.+++|+| ++.+|++++.|+.|++|++.+++....
T Consensus 12 ~~v~~~~~s~--~~~~l~~~~~d~~v~iw~~~~~~~~~~----------------------------------------- 48 (342)
T 1yfq_A 12 DYISDIKIIP--SKSLLLITSWDGSLTVYKFDIQAKNVD----------------------------------------- 48 (342)
T ss_dssp SCEEEEEEEG--GGTEEEEEETTSEEEEEEEETTTTEEE-----------------------------------------
T ss_pred CcEEEEEEcC--CCCEEEEEcCCCeEEEEEeCCCCcccc-----------------------------------------
Confidence 8899999965 677999999999999999876531000
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCC-EEEEe-cCCeEEEEec-cCCCceee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNL-EISNQSFN 269 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~-~~~~~~~~ 269 (514)
... ..+|...|.+++|+|+++ +|+++ .|+.|++||+ ++... .
T Consensus 49 --------------------------------~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~- 93 (342)
T 1yfq_A 49 --------------------------------LLQ-SLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-Q- 93 (342)
T ss_dssp --------------------------------EEE-EEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-E-
T ss_pred --------------------------------cee-eeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-E-
Confidence 000 146778999999999999 99999 8999999999 75533 1
Q ss_pred eeccCCCcccc--cCCceEEEEEecCCCcEEEEEecCCeEEEEEcCC---------CccccccccceeccCCCCccceee
Q 010256 270 IVDVKPANMED--LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ---------SALCDTHSKLFEEQEAPGTRSFFT 338 (514)
Q Consensus 270 ~~~~~~~~~~~--~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 338 (514)
.+.+ |...|.+++|+| + .+|++++.|+.|++||+++ ++.. ..+ .
T Consensus 94 -------~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~----~~~------------~ 148 (342)
T 1yfq_A 94 -------ALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS----NNT------------K 148 (342)
T ss_dssp -------ECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESCS----SSS------------S
T ss_pred -------eccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCee----eEE------------e
Confidence 4566 899999999999 7 8999999999999999986 4321 111 1
Q ss_pred ccccceeEEEEecCCCEEEEE-eCCeEEEEEccC-CCCceeeee-eccccccccccccccCCccceeeEEEcC-CCCEEE
Q 010256 339 EIIASISDIKFARNGRHILSR-DYMTLKLWDINM-DSGPVATFQ-VHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVA 414 (514)
Q Consensus 339 ~~~~~i~~~~~s~~g~~l~~~-~~~~i~iwd~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~ 414 (514)
|...|.+++|+|++ ++++ .++.|++||++. ......... .+.. .+.+++|+| ++++|+
T Consensus 149 -~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~---------------~i~~i~~~~~~~~~l~ 210 (342)
T 1yfq_A 149 -VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKY---------------QIRDVALLPKEQEGYA 210 (342)
T ss_dssp -SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSS---------------CEEEEEECSGGGCEEE
T ss_pred -eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCC---------------ceeEEEECCCCCCEEE
Confidence 44789999999987 5555 559999999985 223222222 2222 145899999 999999
Q ss_pred EEeCCCcEEEEecCCC-----ceeeeeecCCCc---------ceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCC
Q 010256 415 TGSYSNLFRVFGCSEG-----SAESTTLEASKN---------PMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANG 480 (514)
Q Consensus 415 s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~---------~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~ 480 (514)
+++.||.|++|++... ......+..|.. +|.+++|+|++++|++++.||.|++++-.. .....
T Consensus 211 ~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~---~~~~~ 287 (342)
T 1yfq_A 211 CSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT---RKKIK 287 (342)
T ss_dssp EEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT---TEEEE
T ss_pred EEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCcc---HhHhh
Confidence 9999999999999876 244577788765 999999999999999999999999943321 12222
Q ss_pred ccccc-ccceEEEEEcCCCCEEEEEecCcE
Q 010256 481 NAFDF-SMKLLHLAWHPSENSIACAASNSL 509 (514)
Q Consensus 481 ~~~~~-~~~v~~~~~spd~~~l~~~~~~~~ 509 (514)
....| ...|.+++ |++++|++++.++.
T Consensus 288 ~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 288 NFAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp ECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred hhhcccCCCceEec--CCCCeEEEEecCCc
Confidence 33356 88999999 99999999986653
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-32 Score=256.54 Aligned_cols=313 Identities=13% Similarity=0.183 Sum_probs=219.2
Q ss_pred eeeccCCCccccccccccccceeEEEEeeCC-CCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccc
Q 010256 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSA-NSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHV 172 (514)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~-~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (514)
..+.+|. +.|++++|+ + ++.+|++++.||.|++||+.+++.........
T Consensus 37 ~~~~~h~------------~~v~~~~~s--~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~---------------- 86 (408)
T 4a11_B 37 DVERIHG------------GGINTLDIE--PVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKA---------------- 86 (408)
T ss_dssp EECCCCS------------SCEEEEEEC--TTTCCEEEEEETTSCEEEEECCCCSSSSCEEECE----------------
T ss_pred eeeeccC------------CcEEEEEEe--cCCCCEEEEEcCCCeEEEEECCCCcccceEeccc----------------
Confidence 4567787 899999994 5 67899999999999999998764221111000
Q ss_pred cCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC-CCCEEEEe
Q 010256 173 SAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA 251 (514)
Q Consensus 173 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~ 251 (514)
. .........+|...|.+++|+| ++.+|+++
T Consensus 87 ----------------------------------------~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 118 (408)
T 4a11_B 87 ----------------------------------------V--------CSIGRDHPDVHRYSVETVQWYPHDTGMFTSS 118 (408)
T ss_dssp ----------------------------------------E--------EEECTTCTTCCSSCEEEEEECTTCTTCEEEE
T ss_pred ----------------------------------------c--------ccccccccccCCCcEEEEEEccCCCcEEEEE
Confidence 0 0000001256889999999999 77889998
Q ss_pred -cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCC--cEEEEEecCCeEEEEEcCCCccccccccceecc
Q 010256 252 -DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHC--NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 328 (514)
Q Consensus 252 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~--~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 328 (514)
.|+.|++||+++.+.... ..+...+.++.++|.+. .++++++.|+.|++||+++++.. ..
T Consensus 119 ~~d~~i~iwd~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~----~~---- 181 (408)
T 4a11_B 119 SFDKTLKVWDTNTLQTADV---------FNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS----HI---- 181 (408)
T ss_dssp ETTSEEEEEETTTTEEEEE---------EECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC----EE----
T ss_pred eCCCeEEEeeCCCCcccee---------ccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee----ee----
Confidence 899999999986554322 22577899999998642 49999999999999999887642 22
Q ss_pred CCCCccceeeccccceeEEEEecCCCE-EEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEE
Q 010256 329 EAPGTRSFFTEIIASISDIKFARNGRH-ILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 406 (514)
Q Consensus 329 ~~~~~~~~~~~~~~~i~~~~~s~~g~~-l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 406 (514)
+.+|...|.+++|+|++++ +++++ ++.|++||++....++..+..+..................|.+++|
T Consensus 182 --------~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 253 (408)
T 4a11_B 182 --------LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF 253 (408)
T ss_dssp --------ECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEE
T ss_pred --------ecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEE
Confidence 4456689999999999984 77775 4999999998744456655443322111111111112224669999
Q ss_pred cCCCCEEEEEeCCCcEEEEecCCCceeeeeecC-----CCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCc
Q 010256 407 SGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA-----SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGN 481 (514)
Q Consensus 407 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~ 481 (514)
+|++++|++++.||.|++||+.+++... .... ....+...........+++++.|+.+++++-... .....
T Consensus 254 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~~~ 329 (408)
T 4a11_B 254 TSDGLHLLTVGTDNRMRLWNSSNGENTL-VNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG---EQITM 329 (408)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCBCC-CCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC---CEEEE
T ss_pred cCCCCEEEEecCCCeEEEEECCCCccce-eccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCC---cceee
Confidence 9999999999999999999999875432 2221 1222333333455667777888999999433221 22223
Q ss_pred ccccccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 482 AFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 482 ~~~~~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
...|...|++++|+|++++|++++ ++.+.+|.
T Consensus 330 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 362 (408)
T 4a11_B 330 LKGHYKTVDCCVFQSNFQELYSGSRDCNILAWV 362 (408)
T ss_dssp ECCCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred eccCCCeEEEEEEcCCCCEEEEECCCCeEEEEe
Confidence 345889999999999999999888 55688886
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-32 Score=255.34 Aligned_cols=288 Identities=15% Similarity=0.192 Sum_probs=213.9
Q ss_pred ceEEEEEcCCCCeE-EEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccce
Q 010256 37 IISAIEFDKSGDHL-ATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (514)
Q Consensus 37 ~V~~~~~s~~g~~l-~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (514)
....++++|+...+ ++++.||.|+||++...... ......+.+|. ..|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~-------------------~~~~~~~~~h~------------~~V 84 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV-------------------DKNVPLVCGHT------------APV 84 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC-------------------CTTCCCBCCCS------------SCE
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC-------------------CCCCceEecCC------------CCE
Confidence 44568899877544 45789999999998654321 01223467787 889
Q ss_pred eEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCC
Q 010256 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (514)
Q Consensus 116 ~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (514)
++++|+|. ++.+|++++.||.|++||+.++......
T Consensus 85 ~~~~~~p~-~~~~l~s~s~dg~v~vw~~~~~~~~~~~------------------------------------------- 120 (402)
T 2aq5_A 85 LDIAWCPH-NDNVIASGSEDCTVMVWEIPDGGLVLPL------------------------------------------- 120 (402)
T ss_dssp EEEEECTT-CTTEEEEEETTSEEEEEECCTTCCSSCB-------------------------------------------
T ss_pred EEEEeCCC-CCCEEEEEeCCCeEEEEEccCCCCcccc-------------------------------------------
Confidence 99999541 6779999999999999999876311000
Q ss_pred CcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCC-CEEEEe-cCCeEEEEeccCCCceeeeecc
Q 010256 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISNQSFNIVDV 273 (514)
Q Consensus 196 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~ 273 (514)
..+... +.+|...|.+++|+|++ .+|+++ .|+.|++||+++++...
T Consensus 121 --------------------------~~~~~~-~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~----- 168 (402)
T 2aq5_A 121 --------------------------REPVIT-LEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVL----- 168 (402)
T ss_dssp --------------------------CSCSEE-EECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEE-----
T ss_pred --------------------------CCceEE-ecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccE-----
Confidence 001111 36788999999999998 689998 99999999999665443
Q ss_pred CCCcc--cccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccc-eeEEEEe
Q 010256 274 KPANM--EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS-ISDIKFA 350 (514)
Q Consensus 274 ~~~~~--~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~s 350 (514)
.+ ..|...|.+++|+|++ .+|++++.|+.|++||+++++.. ..+. ..|.+. +.++.|+
T Consensus 169 ---~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~----~~~~-----------~~~~~~~~~~~~~~ 229 (402)
T 2aq5_A 169 ---TLGPDVHPDTIYSVDWSRDG-ALICTSCRDKRVRVIEPRKGTVV----AEKD-----------RPHEGTRPVHAVFV 229 (402)
T ss_dssp ---EECTTTCCSCEEEEEECTTS-SCEEEEETTSEEEEEETTTTEEE----EEEE-----------CSSCSSSCCEEEEC
T ss_pred ---EEecCCCCCceEEEEECCCC-CEEEEEecCCcEEEEeCCCCcee----eeec-----------cCCCCCcceEEEEc
Confidence 33 5689999999999998 89999999999999999987653 2221 233344 8999999
Q ss_pred cCCCEEEEE----eCCeEEEEEccCCCCceeeeee-ccccccccccccccCCccceeeEEEcCCCCEEE-EEeCCCcEEE
Q 010256 351 RNGRHILSR----DYMTLKLWDINMDSGPVATFQV-HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA-TGSYSNLFRV 424 (514)
Q Consensus 351 ~~g~~l~~~----~~~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~dg~i~i 424 (514)
|++++|++| .++.|++||++....++..... +... +.+++|+|++++|+ +|+.||.|++
T Consensus 230 ~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---------------v~~~~~s~~~~~l~~~g~~dg~i~i 294 (402)
T 2aq5_A 230 SEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSG---------------VLLPFFDPDTNIVYLCGKGDSSIRY 294 (402)
T ss_dssp STTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSS---------------CEEEEEETTTTEEEEEETTCSCEEE
T ss_pred CCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCc---------------eeEEEEcCCCCEEEEEEcCCCeEEE
Confidence 999999998 4599999999873333433331 2211 34899999999987 4557999999
Q ss_pred EecCCCceeeeeecC--CCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 425 FGCSEGSAESTTLEA--SKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 425 wd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
||+.+++.....+.. |..++.+++|+|++.+++++ ++.+++
T Consensus 295 ~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~--~~~~~~ 337 (402)
T 2aq5_A 295 FEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNK--CEIARF 337 (402)
T ss_dssp EEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGG--TEEEEE
T ss_pred EEecCCCcceEeecccccCCcccceEEecccccceec--ceeEEE
Confidence 999987642344443 56899999999999998865 557777
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-31 Score=252.17 Aligned_cols=283 Identities=15% Similarity=0.212 Sum_probs=222.4
Q ss_pred cccccchhhccccCcccccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceee
Q 010256 14 PLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYK 93 (514)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (514)
-..|+.... + ......+|.+.|++++|+ +++|++|+.||.|++||+.+++ ..
T Consensus 141 i~vwd~~~~--~-~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~-----------------------~~ 192 (445)
T 2ovr_B 141 LKVWSAVTG--K-CLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGE-----------------------CI 192 (445)
T ss_dssp EEEEETTTC--C-EEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTE-----------------------EE
T ss_pred EEEEECCCC--c-EEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCc-----------------------EE
Confidence 345665542 1 112345799999999998 6799999999999999998765 44
Q ss_pred eeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceeccccc
Q 010256 94 TEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVS 173 (514)
Q Consensus 94 ~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 173 (514)
..+.+|. ..|.++.|. +..+++++.||.|++||+.+++....
T Consensus 193 ~~~~~h~------------~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~---------------------- 234 (445)
T 2ovr_B 193 HTLYGHT------------STVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHV---------------------- 234 (445)
T ss_dssp EEECCCS------------SCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEE----------------------
T ss_pred EEECCCC------------CcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEE----------------------
Confidence 6677888 889999993 34899999999999999987653221
Q ss_pred CCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-c
Q 010256 174 AIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D 252 (514)
Q Consensus 174 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~ 252 (514)
+.+|...|.+++| ++++++++ .
T Consensus 235 -------------------------------------------------------~~~~~~~v~~~~~--~~~~l~~~~~ 257 (445)
T 2ovr_B 235 -------------------------------------------------------LMGHVAAVRCVQY--DGRRVVSGAY 257 (445)
T ss_dssp -------------------------------------------------------EECCSSCEEEEEE--CSSCEEEEET
T ss_pred -------------------------------------------------------EcCCcccEEEEEE--CCCEEEEEcC
Confidence 1456788899998 67889988 9
Q ss_pred CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCC
Q 010256 253 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 332 (514)
Q Consensus 253 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 332 (514)
|+.|++||+++.+... .+.+|...|.++.| ++ ..+++++.|+.|++||+++++.. ..
T Consensus 258 dg~i~iwd~~~~~~~~--------~~~~~~~~v~~~~~--~~-~~l~~~~~d~~i~i~d~~~~~~~----~~-------- 314 (445)
T 2ovr_B 258 DFMVKVWDPETETCLH--------TLQGHTNRVYSLQF--DG-IHVVSGSLDTSIRVWDVETGNCI----HT-------- 314 (445)
T ss_dssp TSCEEEEEGGGTEEEE--------EECCCSSCEEEEEE--CS-SEEEEEETTSCEEEEETTTCCEE----EE--------
T ss_pred CCEEEEEECCCCcEeE--------EecCCCCceEEEEE--CC-CEEEEEeCCCeEEEEECCCCCEE----EE--------
Confidence 9999999998665443 45678899999999 56 79999999999999999987652 22
Q ss_pred ccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCC
Q 010256 333 TRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG 411 (514)
Q Consensus 333 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 411 (514)
+.+|...+.++.++ +.++++++ |+.|++||+++ ++.+..+..+.... ..|.+++|+ ++
T Consensus 315 ----~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~------------~~v~~~~~~--~~ 373 (445)
T 2ovr_B 315 ----LTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKT-GQCLQTLQGPNKHQ------------SAVTCLQFN--KN 373 (445)
T ss_dssp ----ECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTT-CCEEEEECSTTSCS------------SCEEEEEEC--SS
T ss_pred ----EcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCC-CcEEEEEccCCCCC------------CCEEEEEEC--CC
Confidence 34455678877775 66888876 59999999987 88888877633211 114478884 68
Q ss_pred EEEEEeCCCcEEEEecCCCceeeeee-----cCCCcceeEEEECCCCCceeecCCCCe
Q 010256 412 RVATGSYSNLFRVFGCSEGSAESTTL-----EASKNPMRRQVQTPSRPSRPLGSLSGV 464 (514)
Q Consensus 412 ~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~s~s~d~~ 464 (514)
+|++|+.||.|++||+.+++.. ..+ .+|...|.+++|+|++.++++++.||+
T Consensus 374 ~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~ 430 (445)
T 2ovr_B 374 FVITSSDDGTVKLWDLKTGEFI-RNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT 430 (445)
T ss_dssp EEEEEETTSEEEEEETTTCCEE-EEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSS
T ss_pred EEEEEeCCCeEEEEECCCCcee-eeeeccccCCCCceEEEEEecCCEEEEEEcccCCC
Confidence 9999999999999999988544 444 478899999999999999999999997
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=253.20 Aligned_cols=229 Identities=14% Similarity=0.136 Sum_probs=151.1
Q ss_pred cccCccCeEEEEECC--------CCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEE
Q 010256 229 AHAHDYHINSISNNS--------DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA 299 (514)
Q Consensus 229 ~~~h~~~v~~~~~~~--------~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~ 299 (514)
+.+|.+.|++++|+| |+++|+++ .|++|++||+++..... .+..|...+.+++|+|++.++|+
T Consensus 132 ~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~--------~~~~~~~~v~~v~~~p~~~~~l~ 203 (393)
T 4gq1_A 132 KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL--------AGYPLSSPGISVQFRPSNPNQLI 203 (393)
T ss_dssp TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE--------EEEECSSCEEEEEEETTEEEEEE
T ss_pred cCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceee--------eecCCCCCcEEEEECCCCCceEE
Confidence 378999999999998 78999999 99999999998665543 34568889999999999856899
Q ss_pred EEecCCeEEEEEcCCCccccccccceeccCC---------CCccceeeccccceeEEEEe-cCCCEEEEEeC-CeEEEEE
Q 010256 300 YSSSKGSIRLIDMRQSALCDTHSKLFEEQEA---------PGTRSFFTEIIASISDIKFA-RNGRHILSRDY-MTLKLWD 368 (514)
Q Consensus 300 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~i~~~~~s-~~g~~l~~~~~-~~i~iwd 368 (514)
+|+.|+.|++||+++++.............. ........+|...+.++.|+ |+++.|++++. +++++||
T Consensus 204 ~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd 283 (393)
T 4gq1_A 204 VGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWN 283 (393)
T ss_dssp EEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEE
T ss_pred ecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEE
Confidence 9999999999999987653221111100000 00112235678899999997 79999999865 9999999
Q ss_pred ccCCCCceeeeeeccccccccccccc---cCCccceeeEEEcC--CCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcc
Q 010256 369 INMDSGPVATFQVHEHLRPKLCDLYE---NDSIFDKFECCLSG--DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNP 443 (514)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 443 (514)
+.. ++....+..+............ ...........|+| ++.++++|+.||.|++||+.++... ..+..|..+
T Consensus 284 ~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~-~~~~~~~~~ 361 (393)
T 4gq1_A 284 LFA-NNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSN-SIPIQLGMP 361 (393)
T ss_dssp C--------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCC-EEEEECSSC
T ss_pred Ccc-CCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEE-EEecCCCCc
Confidence 986 6655555554432211110000 00000111344444 4456778889999999999987554 566778889
Q ss_pred eeEEEECCCCCceeecCCCCeEEE
Q 010256 444 MRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 444 v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
|.+++|+|+|++||+++.+|.+.+
T Consensus 362 V~svafspdG~~LA~as~~Gv~lv 385 (393)
T 4gq1_A 362 IVDFCWHQDGSHLAIATEGSVLLT 385 (393)
T ss_dssp EEEEEECTTSSEEEEEESSEEEEE
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEE
Confidence 999999999999999998887555
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-30 Score=250.85 Aligned_cols=249 Identities=15% Similarity=0.117 Sum_probs=184.2
Q ss_pred cceeEEEEeeCCCCcEE-EEeeCCCeEEEEEcC--ccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 113 EKINKIRWCQSANSALY-LLSTNDKTIKLWKVQ--EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l-~s~~~d~~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
..|.+++| ++++++| ++++.||.|++||+. +++......
T Consensus 103 ~~v~~~~~--s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~------------------------------------ 144 (450)
T 2vdu_B 103 SYIRNLRL--TSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK------------------------------------ 144 (450)
T ss_dssp CCEEEEEE--CTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE------------------------------------
T ss_pred CceEEEEE--cCCCCEEEEEECCCCeEEEEECcCCCCceeeeee------------------------------------
Confidence 57999999 5677786 888999999999997 543221111
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCcee
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 268 (514)
...|...|.+++|+|++++|+++ .++.|++|++.+.....
T Consensus 145 ---------------------------------------~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~ 185 (450)
T 2vdu_B 145 ---------------------------------------RFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEK 185 (450)
T ss_dssp ---------------------------------------EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSS
T ss_pred ---------------------------------------cccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCccccc
Confidence 02455789999999999999999 89999999998655321
Q ss_pred eeeccCCCcccccCCceEEEEEecC---CCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecccccee
Q 010256 269 NIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (514)
Q Consensus 269 ~~~~~~~~~~~~~~~~i~~v~~~p~---~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 345 (514)
. ....+.+|...|.+++|+|+ + .+|++|+.|+.|++||++++... .. .+.+|...|.
T Consensus 186 ~----~~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~d~~i~vwd~~~~~~~----~~-----------~~~~h~~~v~ 245 (450)
T 2vdu_B 186 F----TQEPILGHVSMLTDVHLIKDSDGH-QFIITSDRDEHIKISHYPQCFIV----DK-----------WLFGHKHFVS 245 (450)
T ss_dssp C----CCCCSEECSSCEEEEEEEECTTSC-EEEEEEETTSCEEEEEESCTTCE----EE-----------ECCCCSSCEE
T ss_pred c----cceeeecccCceEEEEEcCCCCCC-cEEEEEcCCCcEEEEECCCCcee----ee-----------eecCCCCceE
Confidence 0 01245678999999999999 7 89999999999999999887642 11 1345778999
Q ss_pred EEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccc----------cccCCccceeeEEEcCCCCEEE
Q 010256 346 DIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDL----------YENDSIFDKFECCLSGDGGRVA 414 (514)
Q Consensus 346 ~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~v~~~~~s~~~~~l~ 414 (514)
+++|+ ++++|++++. +.|++||+.+ ++.+..+..+.......... .....-..+..++|+|++++|+
T Consensus 246 ~~~~s-d~~~l~s~~~d~~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 323 (450)
T 2vdu_B 246 SICCG-KDYLLLSAGGDDKIFAWDWKT-GKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVA 323 (450)
T ss_dssp EEEEC-STTEEEEEESSSEEEEEETTT-CCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEE
T ss_pred EEEEC-CCCEEEEEeCCCeEEEEECCC-CcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEE
Confidence 99999 9999999764 9999999997 88887776543111000000 0001112356899999999999
Q ss_pred EEe-CCCcEEEEec--CCCc--eeeeeecCCCcceeEEEECCCCCceeecCC
Q 010256 415 TGS-YSNLFRVFGC--SEGS--AESTTLEASKNPMRRQVQTPSRPSRPLGSL 461 (514)
Q Consensus 415 s~~-~dg~i~iwd~--~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~ 461 (514)
+++ .|+.|++|++ .++. .....+..| ..+.+++|+|++.++++++.
T Consensus 324 ~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~ 374 (450)
T 2vdu_B 324 FFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNK 374 (450)
T ss_dssp EEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCT
T ss_pred EEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecc
Confidence 998 8999999999 4432 333667777 88999999997655555554
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-30 Score=239.73 Aligned_cols=276 Identities=11% Similarity=0.182 Sum_probs=213.8
Q ss_pred eeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCC
Q 010256 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (514)
Q Consensus 115 v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (514)
.+.|+|+ +++ +|++| .|++|+|||+.+++.......+.+. ..|. +++|+|+++.+
T Consensus 28 ~~~l~WS--~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~------~~V~-------~v~~~~~~~~l-------- 82 (318)
T 4ggc_A 28 LNLVDWS--SGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPG------EYIS-------SVAWIKEGNYL-------- 82 (318)
T ss_dssp CBCEEEC--TTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTT------CCEE-------EEEECTTSSEE--------
T ss_pred ceEEEEC--CCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCC------CeEE-------EEEECCCCCEE--------
Confidence 5779994 454 66655 5999999999999988877665432 3344 88999999998
Q ss_pred CCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeecc
Q 010256 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 273 (514)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~ 273 (514)
++++.|+.|++|+ +.. .++...+ .+|...+.++.+ ++..++++ .++.+++|+.........
T Consensus 83 ----~sgs~Dg~v~iw~-~~~------~~~~~~~-~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~---- 144 (318)
T 4ggc_A 83 ----AVGTSSAEVQLWD-VQQ------QKRLRNM-TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVA---- 144 (318)
T ss_dssp ----EEEETTSEEEEEE-TTT------TEEEEEE-ECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEE----
T ss_pred ----EEEECCCcEEEee-cCC------ceeEEEe-cCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEE----
Confidence 9999999999999 332 2233333 688888776554 56789999 999999999986655443
Q ss_pred CCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCC
Q 010256 274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (514)
Q Consensus 274 ~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 353 (514)
.+.+|...+..+.+++++ ++|++++.|+.|++||+++++........ ...+.+.|.+++++|++
T Consensus 145 ---~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------------~~~~~~~v~~~~~~~~~ 208 (318)
T 4ggc_A 145 ---TLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQT------------FTQHQGAVKAVAWCPWQ 208 (318)
T ss_dssp ---EEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCBTTBSCCSEE------------ECCCCSCEEEEEECTTS
T ss_pred ---EEcCccCceEEEEEcCCC-CEEEEEecCcceeEEECCCCcccccceee------------ecccCCceEEEEecCCC
Confidence 456789999999999999 89999999999999999987643221111 23455789999999977
Q ss_pred CEEE---EEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe--CCCcEEEEec
Q 010256 354 RHIL---SRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS--YSNLFRVFGC 427 (514)
Q Consensus 354 ~~l~---~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--~dg~i~iwd~ 427 (514)
..++ +++. +.|++||... .........+.. +..++|+|+++.+++++ .|+.|++||+
T Consensus 209 ~~~~~~~~~~~~~~i~lwd~~~-~~~~~~~~~~~~----------------v~~~~~~~~~~~~~~~sg~~d~~i~iwd~ 271 (318)
T 4ggc_A 209 SNVLATGGGTSDRHIRIWNVCS-GACLSAVDAHSQ----------------VCSILWSPHYKELISGHGFAQNQLVIWKY 271 (318)
T ss_dssp TTEEEEEECTTTCEEEEEETTT-CCEEEEEECSSC----------------EEEEEEETTTTEEEEEECTTTCCEEEEET
T ss_pred CcEEEEEecCCCCEEEEEeccc-ccccccccceee----------------eeeeeecccccceEEEEEcCCCEEEEEEC
Confidence 6544 2333 9999999986 544444332221 34889999999887654 7999999999
Q ss_pred CCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 428 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.+++ ...++.+|..+|++++|+|++++|+|||.|++|++
T Consensus 272 ~~~~-~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~i 310 (318)
T 4ggc_A 272 PTMA-KVAELKGHTSRVLSLTMSPDGATVASAAADETLRL 310 (318)
T ss_dssp TTCC-EEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEE
T ss_pred CCCc-EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEE
Confidence 9885 45889999999999999999999999999999999
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-30 Score=240.62 Aligned_cols=285 Identities=11% Similarity=0.123 Sum_probs=197.2
Q ss_pred cccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccc
Q 010256 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (514)
..|.+.|++++|+|||++||+|+.+| ++||++.+.+.. . ..+.
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~-----------------------~--~~~~----------- 58 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHI-----------------------M--SQEM----------- 58 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEE-----------------------E--EEEC-----------
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCccee-----------------------e--eeec-----------
Confidence 57899999999999999999998776 789998755421 1 1111
Q ss_pred ccceeEEEEeeCCCCcEE-EEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 112 EEKINKIRWCQSANSALY-LLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l-~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..+..+.+.+.. ..+ ++++.|++|++||+.+++......
T Consensus 59 -~~~~~~~~~~~~--~~~~~~~~~d~~v~iWd~~~~~~~~~~~------------------------------------- 98 (355)
T 3vu4_A 59 -RHLSKVRMLHRT--NYVAFVTGVKEVVHIWDDVKKQDVSRIK------------------------------------- 98 (355)
T ss_dssp -SCCCEEEECTTS--SEEEEECSSTTEEEEEETTTTEEEEEEE-------------------------------------
T ss_pred -CCeEEEEEcCCC--CEEEEEECCccEEEEEECCCCcEEEEEE-------------------------------------
Confidence 236777785433 355 567888999999999887543211
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCC-Cceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEIS-NQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~-~~~~~ 269 (514)
+...|.+++++++. ++++.++.|++||+.+. +...
T Consensus 99 -----------------------------------------~~~~v~~v~~~~~~--~~~~~~~~i~i~d~~~~~~~~~- 134 (355)
T 3vu4_A 99 -----------------------------------------VDAPVKDLFLSREF--IVVSYGDVISVFKFGNPWKRIT- 134 (355)
T ss_dssp -----------------------------------------CSSCEEEEEECSSE--EEEEETTEEEEEESSTTCCBSS-
T ss_pred -----------------------------------------CCCceEEEEEcCCE--EEEEEcCEEEEEECCCCceeeE-
Confidence 23468888998764 55556889999999866 3322
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEE--EecCCeEEEEEcCCCccccccccceeccCCCCc-cceeeccccceeE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAY--SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT-RSFFTEIIASISD 346 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~--~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~ 346 (514)
.+.. ....+++++ . ++++ |+.||.|++||++++.............. ..+ ...+.+|...|.+
T Consensus 135 -------~~~~---~~~~~~~s~-~--~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~-~~p~~~~~~~h~~~v~~ 200 (355)
T 3vu4_A 135 -------DDIR---FGGVCEFSN-G--LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKA-ILGKGVLIKAHTNPIKM 200 (355)
T ss_dssp -------CCEE---EEEEEEEET-T--EEEEEESSCTTCEEEEECCC-------------------CCEEECCCSSCEEE
T ss_pred -------Eecc---CCceEEEEc-c--EEEEeCCCcCcEEEEEECCCCCccccccccccccc-cCcccEEEEccCCceEE
Confidence 2222 445566777 3 4444 68899999999987652110000000000 011 3446788899999
Q ss_pred EEEecCCCEEEEEeC-Ce-EEEEEccCCCCceeeee-e-ccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcE
Q 010256 347 IKFARNGRHILSRDY-MT-LKLWDINMDSGPVATFQ-V-HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 422 (514)
Q Consensus 347 ~~~s~~g~~l~~~~~-~~-i~iwd~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 422 (514)
++|+|+|++|++|+. ++ |++||+++ ++.+..+. + |... |.+++|+|+|++|++++.|+.|
T Consensus 201 ~~~s~~g~~l~s~s~d~~~v~iwd~~~-~~~~~~~~~g~h~~~---------------v~~~~~s~~~~~l~s~s~d~~v 264 (355)
T 3vu4_A 201 VRLNRKSDMVATCSQDGTIIRVFKTED-GVLVREFRRGLDRAD---------------VVDMKWSTDGSKLAVVSDKWTL 264 (355)
T ss_dssp EEECTTSSEEEEEETTCSEEEEEETTT-CCEEEEEECTTCCSC---------------EEEEEECTTSCEEEEEETTCEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEECCC-CcEEEEEEcCCCCCc---------------EEEEEECCCCCEEEEEECCCEE
Confidence 999999999999865 98 99999997 88888887 3 5543 4599999999999999999999
Q ss_pred EEEecCCCceee-eeecC---------------------CCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 423 RVFGCSEGSAES-TTLEA---------------------SKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 423 ~iwd~~~~~~~~-~~~~~---------------------~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
++||+....... ..+.. +..+...++|++++++|++++.||.+++
T Consensus 265 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~ 331 (355)
T 3vu4_A 265 HVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIET 331 (355)
T ss_dssp EEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEE
T ss_pred EEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEE
Confidence 999997653211 11111 1223467899999999999999999988
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-30 Score=243.48 Aligned_cols=282 Identities=10% Similarity=0.117 Sum_probs=208.4
Q ss_pred eeeeeccCCCccccccccccccceeEEEEeeCC-CCcEEEEeeCCCeEEEEEcCc-cEEEEEeeccCCCccccCCcceec
Q 010256 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSA-NSALYLLSTNDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFG 169 (514)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~-~~~~l~s~~~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~v~~ 169 (514)
....+.+|. +.|++++|+|.. +|.+|++++.||.|++||+.+ ++...
T Consensus 31 ~~~~~~~h~------------~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~------------------- 79 (368)
T 3mmy_A 31 DIEVTSSPD------------DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP------------------- 79 (368)
T ss_dssp CEECSSCCS------------SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE-------------------
T ss_pred eeEeccCCC------------CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE-------------------
Confidence 345677887 899999996431 158999999999999999986 32110
Q ss_pred ccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEE
Q 010256 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 249 (514)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 249 (514)
..+.+|...|.+++|+|++++|+
T Consensus 80 ---------------------------------------------------------~~~~~h~~~v~~~~~~~~~~~l~ 102 (368)
T 3mmy_A 80 ---------------------------------------------------------KAQQMHTGPVLDVCWSDDGSKVF 102 (368)
T ss_dssp ---------------------------------------------------------EEEEECSSCEEEEEECTTSSEEE
T ss_pred ---------------------------------------------------------EEeccccCCEEEEEECcCCCEEE
Confidence 00256888999999999999999
Q ss_pred Ee-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEE--ecCCCcEEEEEecCCeEEEEEcCCCcccccccccee
Q 010256 250 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF--HPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 326 (514)
Q Consensus 250 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~--~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 326 (514)
++ .|+.|++||+++.+.. .+..|...|.+++| +|++ .+|++++.||.|++||+++++. ...+.
T Consensus 103 s~~~dg~v~iwd~~~~~~~---------~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~----~~~~~ 168 (368)
T 3mmy_A 103 TASCDKTAKMWDLSSNQAI---------QIAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNP----MMVLQ 168 (368)
T ss_dssp EEETTSEEEEEETTTTEEE---------EEEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSC----SEEEE
T ss_pred EEcCCCcEEEEEcCCCCce---------eeccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcE----EEEEe
Confidence 99 9999999999865433 23558999999999 8888 8999999999999999998765 33333
Q ss_pred ccCCCCccceeeccccceeEEEEecCCCEEEEE-eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEE
Q 010256 327 EQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC 405 (514)
Q Consensus 327 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 405 (514)
.+ ..+.++.+.+ ..++++ .++.+.+|++................ .+..++
T Consensus 169 ~~-------------~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~ 219 (368)
T 3mmy_A 169 LP-------------ERCYCADVIY--PMAVVATAERGLIVYQLENQPSEFRRIESPLKH--------------QHRCVA 219 (368)
T ss_dssp CS-------------SCEEEEEEET--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSS--------------CEEEEE
T ss_pred cC-------------CCceEEEecC--CeeEEEeCCCcEEEEEeccccchhhhccccccC--------------CCceEE
Confidence 32 3466666664 355554 55999999998632222222111110 122555
Q ss_pred EcCCCCE----EEEEeCCCcEEEEecCCCc--eeeeeecCCCc------------ceeEEEECCCCCceeecCCCCeEEE
Q 010256 406 LSGDGGR----VATGSYSNLFRVFGCSEGS--AESTTLEASKN------------PMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 406 ~s~~~~~----l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~------------~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+.++... +++++.||.|++|++.... .....+.+|.. +|.+++|+|++++|++++.||.|++
T Consensus 220 ~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~i 299 (368)
T 3mmy_A 220 IFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSF 299 (368)
T ss_dssp EEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEE
T ss_pred EcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEE
Confidence 5555544 9999999999999998763 23367777776 7999999999999999999999999
Q ss_pred eeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecC
Q 010256 468 VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASN 507 (514)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~ 507 (514)
++-.. .........|...|.+++|+||+++|++++.+
T Consensus 300 wd~~~---~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d 336 (368)
T 3mmy_A 300 WDKDA---RTKLKTSEQLDQPISACCFNHNGNIFAYASSY 336 (368)
T ss_dssp EETTT---TEEEEECCCCSSCEEEEEECTTSSCEEEEECC
T ss_pred EECCC---CcEEEEecCCCCCceEEEECCCCCeEEEEecc
Confidence 43321 12222333578999999999999999999855
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-30 Score=245.84 Aligned_cols=250 Identities=16% Similarity=0.173 Sum_probs=197.8
Q ss_pred eeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceeccc
Q 010256 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (514)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (514)
....+.+|. +.|++++| ++++.+|++++.||.|++||+..+......
T Consensus 3 ~~~~~~~h~------------~~v~~~~~--s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~------------------- 49 (379)
T 3jrp_A 3 MVVIANAHN------------ELIHDAVL--DYYGKRLATCSSDKTIKIFEVEGETHKLID------------------- 49 (379)
T ss_dssp --CCEEECC------------CCEEEEEE--CSSSSEEEEEETTSCEEEEEEETTEEEEEE-------------------
T ss_pred ccEEecCCc------------ccEEEEEE--cCCCCEEEEEECCCcEEEEecCCCcceeee-------------------
Confidence 345678888 89999999 567789999999999999999743321110
Q ss_pred ccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC--CCEEE
Q 010256 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFI 249 (514)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~ 249 (514)
. +.+|...|.+++|+++ +++|+
T Consensus 50 -------------------------------------------------------~-~~~h~~~v~~~~~~~~~~~~~l~ 73 (379)
T 3jrp_A 50 -------------------------------------------------------T-LTGHEGPVWRVDWAHPKFGTILA 73 (379)
T ss_dssp -------------------------------------------------------E-ECCCSSCEEEEEECCGGGCSEEE
T ss_pred -------------------------------------------------------E-ecCCCCcEEEEEeCCCCCCCEEE
Confidence 0 2578899999999987 99999
Q ss_pred Ee-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecC--CCcEEEEEecCCeEEEEEcCCCcccccccccee
Q 010256 250 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 326 (514)
Q Consensus 250 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 326 (514)
++ .|+.|++||+++++.... ..+..|...|.+++|+|+ + .+|++++.|+.|++||++++....
T Consensus 74 s~~~dg~v~iwd~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~------- 139 (379)
T 3jrp_A 74 SCSYDGKVLIWKEENGRWSQI------AVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTS------- 139 (379)
T ss_dssp EEETTSCEEEEEEETTEEEEE------EEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCTTSCCC-------
T ss_pred EeccCCEEEEEEcCCCceeEe------eeecCCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecCCCCcee-------
Confidence 99 999999999986542111 145668899999999999 7 899999999999999998764321
Q ss_pred ccCCCCccceeeccccceeEEEEec-------------CCCEEEEEeC-CeEEEEEccCCCCc----eeeeeeccccccc
Q 010256 327 EQEAPGTRSFFTEIIASISDIKFAR-------------NGRHILSRDY-MTLKLWDINMDSGP----VATFQVHEHLRPK 388 (514)
Q Consensus 327 ~~~~~~~~~~~~~~~~~i~~~~~s~-------------~g~~l~~~~~-~~i~iwd~~~~~~~----~~~~~~~~~~~~~ 388 (514)
...+.+|...|.+++|+| ++.++++++. +.|++||++. +.. ...+..|...
T Consensus 140 -------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~h~~~--- 208 (379)
T 3jrp_A 140 -------PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS-DAQTYVLESTLEGHSDW--- 208 (379)
T ss_dssp -------EEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEET-TTTEEEEEEEECCCSSC---
T ss_pred -------eEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecC-CCcceeeEEEEecccCc---
Confidence 112455668999999999 6899999864 9999999986 432 3344455443
Q ss_pred cccccccCCccceeeEEEcCC---CCEEEEEeCCCcEEEEecCCCce----eeeeecCCCcceeEEEECCCCCceeecCC
Q 010256 389 LCDLYENDSIFDKFECCLSGD---GGRVATGSYSNLFRVFGCSEGSA----ESTTLEASKNPMRRQVQTPSRPSRPLGSL 461 (514)
Q Consensus 389 ~~~~~~~~~~~~v~~~~~s~~---~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~s~ 461 (514)
|.+++|+|+ +++|++++.||.|++||+.++.. .......|...+.+++|+|++++|++++.
T Consensus 209 ------------v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 276 (379)
T 3jrp_A 209 ------------VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG 276 (379)
T ss_dssp ------------EEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEES
T ss_pred ------------EeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecC
Confidence 459999999 89999999999999999987632 12233458899999999999999999999
Q ss_pred CCeEEE
Q 010256 462 SGVVRR 467 (514)
Q Consensus 462 d~~v~i 467 (514)
||.|++
T Consensus 277 dg~i~i 282 (379)
T 3jrp_A 277 DNKVTL 282 (379)
T ss_dssp SSSEEE
T ss_pred CCcEEE
Confidence 999999
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-31 Score=243.99 Aligned_cols=304 Identities=14% Similarity=0.126 Sum_probs=192.0
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
+.|++++| ++++.+|++++.||.|++||+.++.....
T Consensus 12 ~~v~~~~~--~~~~~~l~~~~~dg~i~iw~~~~~~~~~~----------------------------------------- 48 (351)
T 3f3f_A 12 DLVHDVVY--DFYGRHVATCSSDQHIKVFKLDKDTSNWE----------------------------------------- 48 (351)
T ss_dssp SCEEEEEE--CSSSSEEEEEETTSEEEEEEECSSSCCEE-----------------------------------------
T ss_pred cceeEEEE--cCCCCEEEEeeCCCeEEEEECCCCCCcce-----------------------------------------
Confidence 89999999 55778999999999999999976421000
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC--CCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
.... +.+|...|.+++|+| ++++|+++ .|+.|++||++.+.....
T Consensus 49 -------------------------------~~~~-~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~ 96 (351)
T 3f3f_A 49 -------------------------------LSDS-WRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECS 96 (351)
T ss_dssp -------------------------------EEEE-EECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTS
T ss_pred -------------------------------ecce-eccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccccc
Confidence 0001 257889999999999 69999999 999999999986532100
Q ss_pred eecc-CCCcccccCCceEEEEEecC--CCcEEEEEecCCeEEEEEcCCCccccccccceeccCCC-Cccceeecccccee
Q 010256 270 IVDV-KPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP-GTRSFFTEIIASIS 345 (514)
Q Consensus 270 ~~~~-~~~~~~~~~~~i~~v~~~p~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~ 345 (514)
.... ....+..|...|.+++|+|+ + .+|++++.||.|++||+++++... .+...... ........|...+.
T Consensus 97 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 171 (351)
T 3f3f_A 97 GRRWNKLCTLNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDALEPSDLR----SWTLTSEMKVLSIPPANHLQSDF 171 (351)
T ss_dssp SCSEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEECSSTTCTT----CCEEEEEEESCSCCCSSCSCCCE
T ss_pred ccCcceeeeecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecCCChHHhc----cccccccccccccccCCccccee
Confidence 0000 00145678999999999999 8 899999999999999999877532 22211000 00011235667899
Q ss_pred EEEEecC---CCEEEEEeC-CeEEEEEccCCCCc--eeeeeeccccccccccccccCCccceeeEEEcCCC----CEEEE
Q 010256 346 DIKFARN---GRHILSRDY-MTLKLWDINMDSGP--VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG----GRVAT 415 (514)
Q Consensus 346 ~~~~s~~---g~~l~~~~~-~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~s 415 (514)
+++|+|+ +.++++++. +.+.+|+... ++. +..+..|... |.+++|+|++ ++|++
T Consensus 172 ~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~---------------i~~~~~~p~~~~~~~~l~s 235 (351)
T 3f3f_A 172 CLSWCPSRFSPEKLAVSALEQAIIYQRGKD-GKLHVAAKLPGHKSL---------------IRSISWAPSIGRWYQLIAT 235 (351)
T ss_dssp EEEECCCSSSCCEEEEEETTEEEEEEECTT-SCEEEEEECCCCCSC---------------EEEEEECCCSSCSSEEEEE
T ss_pred EEEeccCCCCCcEEEEecCCCcEEEEccCC-CceeeeeecCCCCcc---------------eeEEEECCCCCCcceEEEE
Confidence 9999997 889998765 7776666654 443 4555555543 4599999998 89999
Q ss_pred EeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE-eeCCCCCccccCCcccccccceEEEEE
Q 010256 416 GSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR-VKGADNSALDANGNAFDFSMKLLHLAW 494 (514)
Q Consensus 416 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i-~~~~~~~~~~~~~~~~~~~~~v~~~~~ 494 (514)
++.||.|++||+..+... .....+..........+....++.+..++.... ..-+.............|...|++++|
T Consensus 236 ~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 314 (351)
T 3f3f_A 236 GCKDGRIRIFKITEKLSP-LASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSW 314 (351)
T ss_dssp EETTSCEEEEEEEECC----------------------------------------CCSEEEEEEEEECTTSSCEEEEEE
T ss_pred EcCCCeEEEEeCCCCcCc-cccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEE
Confidence 999999999999876333 223333333444444555555555544433222 111111111122223358899999999
Q ss_pred cCCCCEEEEEe-cCcEEEEe
Q 010256 495 HPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 495 spd~~~l~~~~-~~~~~i~~ 513 (514)
+|++++|++++ ++.+.+|.
T Consensus 315 s~~~~~l~s~~~dg~v~iw~ 334 (351)
T 3f3f_A 315 NLTGTILSSAGDDGKVRLWK 334 (351)
T ss_dssp CSSSCCEEEEETTSCEEEEE
T ss_pred cCCCCEEEEecCCCcEEEEe
Confidence 99999999888 55688886
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-31 Score=252.07 Aligned_cols=280 Identities=13% Similarity=0.124 Sum_probs=206.3
Q ss_pred cCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC-CCCEEEEe-cCCeEEEEeccCCCceeeeeccCCC
Q 010256 199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFNIVDVKPA 276 (514)
Q Consensus 199 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~ 276 (514)
++++.+|.|++|+ +...... ...... +.+|...|.+++|+| ++++|++| .||+|++||+.+.+..... .....
T Consensus 51 ~~~~~~g~i~v~~-~~~~~~~--~~~~~~-~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~-~~~~~ 125 (402)
T 2aq5_A 51 CEASGGGAFLVLP-LGKTGRV--DKNVPL-VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPL-REPVI 125 (402)
T ss_dssp BCCSSSCCEEEEE-TTCCEEC--CTTCCC-BCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCB-CSCSE
T ss_pred EEEcCCCEEEEEE-CccCCCC--CCCCce-EecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcccc-CCceE
Confidence 5688999999999 3222111 112222 378999999999999 89999999 9999999999866321100 00012
Q ss_pred cccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEE
Q 010256 277 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI 356 (514)
Q Consensus 277 ~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 356 (514)
.+.+|...|.+++|+|++.++|++++.|+.|++||+++++.. ..+. ..+|...|.+++|+|++++|
T Consensus 126 ~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~----------~~~~~~~v~~~~~~~~~~~l 191 (402)
T 2aq5_A 126 TLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAV----LTLG----------PDVHPDTIYSVDWSRDGALI 191 (402)
T ss_dssp EEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEE----EEEC----------TTTCCSCEEEEEECTTSSCE
T ss_pred EecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCcc----EEEe----------cCCCCCceEEEEECCCCCEE
Confidence 567899999999999997569999999999999999987652 2220 03466889999999999999
Q ss_pred EEEe-CCeEEEEEccCCCCceeee-eeccccccccccccccCCccceeeEEEcCCCCEEEEE---eCCCcEEEEecCCCc
Q 010256 357 LSRD-YMTLKLWDINMDSGPVATF-QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG---SYSNLFRVFGCSEGS 431 (514)
Q Consensus 357 ~~~~-~~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~---~~dg~i~iwd~~~~~ 431 (514)
++++ |+.|++||++. ++.+..+ ..|.... +..++|+|++++|++| +.|+.|++||+.++.
T Consensus 192 ~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~ 256 (402)
T 2aq5_A 192 CTSCRDKRVRVIEPRK-GTVVAEKDRPHEGTR--------------PVHAVFVSEGKILTTGFSRMSERQVALWDTKHLE 256 (402)
T ss_dssp EEEETTSEEEEEETTT-TEEEEEEECSSCSSS--------------CCEEEECSTTEEEEEEECTTCCEEEEEEETTBCS
T ss_pred EEEecCCcEEEEeCCC-CceeeeeccCCCCCc--------------ceEEEEcCCCcEEEEeccCCCCceEEEEcCcccc
Confidence 9976 59999999997 7777777 5665431 2389999999999999 799999999998865
Q ss_pred eeeeeec-CCCcceeEEEECCCCCcee-ecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecCcE
Q 010256 432 AESTTLE-ASKNPMRRQVQTPSRPSRP-LGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSL 509 (514)
Q Consensus 432 ~~~~~~~-~~~~~v~~~~~~~~~~~l~-s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~ 509 (514)
....... .|...+..++|+|++++|+ +++.|+.|++++-............+.+...|.+++|+|++.+++++ ++.+
T Consensus 257 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~-~~~~ 335 (402)
T 2aq5_A 257 EPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNK-CEIA 335 (402)
T ss_dssp SCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGG-TEEE
T ss_pred CCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceec-ceeE
Confidence 5333333 5778899999999999986 56689999993322111000011112356899999999999988753 4467
Q ss_pred EEEe
Q 010256 510 YMYY 513 (514)
Q Consensus 510 ~i~~ 513 (514)
.+|.
T Consensus 336 ~~~~ 339 (402)
T 2aq5_A 336 RFYK 339 (402)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7774
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-31 Score=251.42 Aligned_cols=259 Identities=10% Similarity=0.102 Sum_probs=163.1
Q ss_pred ccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEec--------CCCcEEEE
Q 010256 230 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP--------THCNMLAY 300 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p--------~~~~~l~~ 300 (514)
..|...+....+.+++.+|+++ .|++|++||.+++....... ...+.+|.+.|.+++|+| ++ ++|++
T Consensus 86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~---~~~~~gH~~~v~~v~~~p~~~~~~~~d~-~~las 161 (393)
T 4gq1_A 86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHV---LGGKSGHHNFVNDIDIADVYSADNRLAE-QVIAS 161 (393)
T ss_dssp C----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEE---ECTTTSCSSCEEEEEEEEEECTTCSEEE-EEEEE
T ss_pred cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeee---ecccCCCCCceEEEEEccccccccCCCC-CEEEE
Confidence 3455556666677788899999 99999999998654322110 125789999999999998 66 89999
Q ss_pred EecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCC-EEEEEe-CCeEEEEEccCCCCceee
Q 010256 301 SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR-HILSRD-YMTLKLWDINMDSGPVAT 378 (514)
Q Consensus 301 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~~-~~~i~iwd~~~~~~~~~~ 378 (514)
|+.|++|+|||++++... . .+.+|...+.+++|+|++. +|++++ |++|++||+++ ++....
T Consensus 162 ~s~D~tv~~Wd~~~~~~~----~------------~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t-~~~~~~ 224 (393)
T 4gq1_A 162 VGDDCTLIIWRLTDEGPI----L------------AGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTL-NLSAEE 224 (393)
T ss_dssp EETTSEEEEEEEETTEEE----E------------EEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC-CC----
T ss_pred EECCCeEEEEECCCCcee----e------------eecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCC-Cccccc
Confidence 999999999999876542 1 1344557899999999875 677776 49999999987 544433
Q ss_pred eeecccccccc----------ccccccCCccceeeEEEc-CCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEE
Q 010256 379 FQVHEHLRPKL----------CDLYENDSIFDKFECCLS-GDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQ 447 (514)
Q Consensus 379 ~~~~~~~~~~~----------~~~~~~~~~~~v~~~~~s-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 447 (514)
...+....... ...........+.++.|+ +|++.|++++.|+.+++||+..+.. ...+..|...+..+
T Consensus 225 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~-~~~l~~~~~~~~~~ 303 (393)
T 4gq1_A 225 NSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANND-YNEISDSTMKLGPK 303 (393)
T ss_dssp ------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------
T ss_pred ccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCC-CceEeeecCccccE
Confidence 32221111000 000001111234478876 8999999999999999999987633 24444444443333
Q ss_pred EE------------------CC--CCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecC
Q 010256 448 VQ------------------TP--SRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASN 507 (514)
Q Consensus 448 ~~------------------~~--~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~ 507 (514)
.+ +| ++.++++|+.|+.|++.+.... ........|...|++++|||||++||+++++
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~---~~~~~~~~~~~~V~svafspdG~~LA~as~~ 380 (393)
T 4gq1_A 304 NLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEK---DSNSIPIQLGMPIVDFCWHQDGSHLAIATEG 380 (393)
T ss_dssp CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCT---TCCEEEEECSSCEEEEEECTTSSEEEEEESS
T ss_pred EEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCC---cEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 22 22 4457889999999999443221 2223345678899999999999999999999
Q ss_pred cEEEEe
Q 010256 508 SLYMYY 513 (514)
Q Consensus 508 ~~~i~~ 513 (514)
++.+|.
T Consensus 381 Gv~lvr 386 (393)
T 4gq1_A 381 SVLLTR 386 (393)
T ss_dssp EEEEEE
T ss_pred CeEEEE
Confidence 999885
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.98 E-value=2.8e-30 Score=247.21 Aligned_cols=269 Identities=17% Similarity=0.249 Sum_probs=199.6
Q ss_pred cccccccceEEEEEcCC-CCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccc
Q 010256 30 EEVQEVDIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (514)
Q Consensus 30 ~~~~h~~~V~~~~~s~~-g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (514)
..+.|.+.|++++|+|+ +.+||+|+.||.|++|++.+...... ..........+.+|.
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-------------~~~~~~~~~~~~~h~-------- 181 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-------------PSGECQPDLRLRGHQ-------- 181 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-------------TTCCCCCSEEEECCS--------
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-------------ccccCCCcEEecCCC--------
Confidence 35689999999999997 78999999999999999975321100 001123455677887
Q ss_pred cccccceeEEEEeeCCCCc-EEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccc
Q 010256 109 LEIEEKINKIRWCQSANSA-LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (514)
Q Consensus 109 ~~~~~~v~~i~~~~~~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 187 (514)
..|.+++|+ +++. +|++++.||.|++|++..+.....
T Consensus 182 ----~~v~~l~~~--~~~~~~l~s~~~dg~i~vwd~~~~~~~~~------------------------------------ 219 (430)
T 2xyi_A 182 ----KEGYGLSWN--PNLNGYLLSASDDHTICLWDINATPKEHR------------------------------------ 219 (430)
T ss_dssp ----SCCCCEEEC--TTSTTEEEEECTTSCEEEEETTSCCBGGG------------------------------------
T ss_pred ----CCeEEEEeC--CCCCCeEEEEeCCCeEEEEeCCCCCCCCc------------------------------------
Confidence 889999995 4555 999999999999999986421000
Q ss_pred cccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC-CCCEEEEe-cCCeEEEEeccCCC
Q 010256 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISN 265 (514)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~ 265 (514)
. ...... ..+|...|.+++|+| ++.+|+++ .|+.|++||+++..
T Consensus 220 ------------------~---------------~~~~~~-~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~ 265 (430)
T 2xyi_A 220 ------------------V---------------IDAKNI-FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN 265 (430)
T ss_dssp ------------------E---------------EECSEE-ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSC
T ss_pred ------------------e---------------ecccee-ecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 0 000011 257889999999999 67888898 99999999999653
Q ss_pred ceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecccccee
Q 010256 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (514)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 345 (514)
....+ ..+..|...|++++|+|++..+|++|+.||.|++||+++.... +. .+..|...|.
T Consensus 266 ~~~~~-----~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~---~~------------~~~~h~~~v~ 325 (430)
T 2xyi_A 266 TSKPS-----HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK---LH------------SFESHKDEIF 325 (430)
T ss_dssp SSSCS-----EEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC---SE------------EEECCSSCEE
T ss_pred CCcce-----eEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCC---eE------------EeecCCCCEE
Confidence 11111 1345788999999999998568999999999999999874321 22 2445668999
Q ss_pred EEEEecCCC-EEEEEe-CCeEEEEEccCCC-------------CceeeeeeccccccccccccccCCccceeeEEEcCCC
Q 010256 346 DIKFARNGR-HILSRD-YMTLKLWDINMDS-------------GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDG 410 (514)
Q Consensus 346 ~~~~s~~g~-~l~~~~-~~~i~iwd~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 410 (514)
+++|+|+++ +|++++ ++.|+|||+...+ ..+..+.+|... |.+++|+|++
T Consensus 326 ~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~---------------v~~~~~~p~~ 390 (430)
T 2xyi_A 326 QVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAK---------------ISDFSWNPNE 390 (430)
T ss_dssp EEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSC---------------EEEEEECSSS
T ss_pred EEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCC---------------ceEEEECCCC
Confidence 999999996 567765 5999999998622 223333344332 4599999999
Q ss_pred C-EEEEEeCCCcEEEEecCCC
Q 010256 411 G-RVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 411 ~-~l~s~~~dg~i~iwd~~~~ 430 (514)
+ +|++++.||.|+||++...
T Consensus 391 ~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 391 PWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp TTEEEEEETTSEEEEEEECHH
T ss_pred CCEEEEEECCCCEEEeEcccc
Confidence 9 8999999999999998743
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-29 Score=242.67 Aligned_cols=262 Identities=16% Similarity=0.213 Sum_probs=198.7
Q ss_pred cccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccc
Q 010256 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (514)
Q Consensus 109 ~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (514)
..+.+.|++++|+|. ++.+|++++.||.|++|++....... .+.+.
T Consensus 125 ~~h~~~v~~l~~~p~-~~~~lat~~~dg~V~vwd~~~~~~~~-----------------------------~~~~~---- 170 (430)
T 2xyi_A 125 INHEGEVNRARYMPQ-NACVIATKTPSSDVLVFDYTKHPSKP-----------------------------EPSGE---- 170 (430)
T ss_dssp EEESSCCSEEEEETT-EEEEEEEECSSSCEEEEEGGGSCSSC-----------------------------CTTCC----
T ss_pred EcCCCcEEEEEECCC-CCcEEEEECCCCcEEEEECCCccccc-----------------------------Ccccc----
Confidence 344488999999752 25689999999999999997531000 00000
Q ss_pred ccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCC-EEEEe-cCCeEEEEeccCCCc
Q 010256 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQ 266 (514)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~ 266 (514)
...... +.+|...|.+++|+|++. +|++| .||.|++||+.....
T Consensus 171 ---------------------------------~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 216 (430)
T 2xyi_A 171 ---------------------------------CQPDLR-LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPK 216 (430)
T ss_dssp ---------------------------------CCCSEE-EECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCB
T ss_pred ---------------------------------CCCcEE-ecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCC
Confidence 001111 267889999999999988 99999 899999999986432
Q ss_pred eeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeE
Q 010256 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (514)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 346 (514)
....+. ....+..|...|.+++|+|++..+|++++.||.|++||++++... .... .+..|...|++
T Consensus 217 ~~~~~~-~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~-~~~~------------~~~~~~~~v~~ 282 (430)
T 2xyi_A 217 EHRVID-AKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS-KPSH------------TVDAHTAEVNC 282 (430)
T ss_dssp GGGEEE-CSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS-SCSE------------EEECCSSCEEE
T ss_pred CCceec-cceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC-ccee------------EeecCCCCeEE
Confidence 211110 012456789999999999955589999999999999999976311 0011 23456689999
Q ss_pred EEEecCCC-EEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCC-EEEEEeCCCcEE
Q 010256 347 IKFARNGR-HILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYSNLFR 423 (514)
Q Consensus 347 ~~~s~~g~-~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~ 423 (514)
++|+|+++ ++++|+. +.|++||++....++..+..|... |.+++|+|+++ +|++++.||.|+
T Consensus 283 i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~---------------v~~i~~sp~~~~~l~s~~~d~~i~ 347 (430)
T 2xyi_A 283 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDE---------------IFQVQWSPHNETILASSGTDRRLH 347 (430)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSC---------------EEEEEECSSCTTEEEEEETTSCCE
T ss_pred EEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCC---------------EEEEEECCCCCCEEEEEeCCCcEE
Confidence 99999987 5777764 999999999756678888877654 44999999995 699999999999
Q ss_pred EEecCCCc-------------eeeeeecCCCcceeEEEECCCCC-ceeecCCCCeEEE
Q 010256 424 VFGCSEGS-------------AESTTLEASKNPMRRQVQTPSRP-SRPLGSLSGVVRR 467 (514)
Q Consensus 424 iwd~~~~~-------------~~~~~~~~~~~~v~~~~~~~~~~-~l~s~s~d~~v~i 467 (514)
|||+.... .....+.+|...|+.+.|+|+++ ++++++.|+.|++
T Consensus 348 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~i 405 (430)
T 2xyi_A 348 VWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQV 405 (430)
T ss_dssp EEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEE
T ss_pred EEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEE
Confidence 99998632 34466778999999999999999 8999999999999
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.2e-29 Score=239.06 Aligned_cols=238 Identities=10% Similarity=0.083 Sum_probs=178.9
Q ss_pred ccCccCeEEEEECCCCCEE-EEe-cCCeEEEEecc--CCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCC
Q 010256 230 HAHDYHINSISNNSDGETF-ISA-DDLRINLWNLE--ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG 305 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~~~l-~s~-~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg 305 (514)
.+|.+.|.+++|+|++++| +++ .|+.|++||+. +++....+ ....+...|.+++|+|++ .+|++|+.+|
T Consensus 99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~------~~~~~~~~v~~~~~sp~~-~~l~~~~~~g 171 (450)
T 2vdu_B 99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLR------KRFCFSKRPNAISIAEDD-TTVIIADKFG 171 (450)
T ss_dssp -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEE------EEEECSSCEEEEEECTTS-SEEEEEETTS
T ss_pred CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeee------ecccCCCCceEEEEcCCC-CEEEEEeCCC
Confidence 4677899999999999996 788 89999999998 55443221 112467889999999999 8999999999
Q ss_pred eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecC---CCEEEEEeC-CeEEEEEccCCCCceee-ee
Q 010256 306 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN---GRHILSRDY-MTLKLWDINMDSGPVAT-FQ 380 (514)
Q Consensus 306 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---g~~l~~~~~-~~i~iwd~~~~~~~~~~-~~ 380 (514)
.+++|++.++....... ..+.+|...|.+++|+|+ +++|++++. +.|++||+.+ ++.+.. +.
T Consensus 172 ~v~~~~~~~~~~~~~~~------------~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~ 238 (450)
T 2vdu_B 172 DVYSIDINSIPEEKFTQ------------EPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ-CFIVDKWLF 238 (450)
T ss_dssp EEEEEETTSCCCSSCCC------------CCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC-TTCEEEECC
T ss_pred cEEEEecCCcccccccc------------eeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC-Cceeeeeec
Confidence 99999998866421011 124567789999999999 999999865 9999999997 676666 44
Q ss_pred eccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeec----------------------
Q 010256 381 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE---------------------- 438 (514)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---------------------- 438 (514)
+|... |.+++|+ ++++|++++.|+.|++||+.+++.. ..+.
T Consensus 239 ~h~~~---------------v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (450)
T 2vdu_B 239 GHKHF---------------VSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNL-STFDYNSLIKPYLNDQHLAPPRFQNE 301 (450)
T ss_dssp CCSSC---------------EEEEEEC-STTEEEEEESSSEEEEEETTTCCEE-EEEECHHHHGGGCCTTSBC-------
T ss_pred CCCCc---------------eEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEe-eeecchhhhhhhhhhccccccccccc
Confidence 66544 4499999 9999999999999999999988544 4443
Q ss_pred ---CCCcceeEEEECCCCCceeecC-CCCeEEEeeC--CCCCccccCCcccccccceEEEEEcCCCCEEEEEe
Q 010256 439 ---ASKNPMRRQVQTPSRPSRPLGS-LSGVVRRVKG--ADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 505 (514)
Q Consensus 439 ---~~~~~v~~~~~~~~~~~l~s~s-~d~~v~i~~~--~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~ 505 (514)
.....+..++++|++++|++++ .|+.|++++- ..............+ ..|.+++|+|++.++++++
T Consensus 302 ~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~ 373 (450)
T 2vdu_B 302 NNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDN 373 (450)
T ss_dssp ---CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECC
T ss_pred ccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEec
Confidence 2235688999999999999998 8999999433 111000111111123 8899999999654444444
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-29 Score=241.43 Aligned_cols=269 Identities=17% Similarity=0.260 Sum_probs=212.4
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
..|.++.| ++.++++|+.||.|++||+.+++....
T Consensus 134 ~~v~~~~~----d~~~l~~g~~dg~i~iwd~~~~~~~~~----------------------------------------- 168 (435)
T 1p22_A 134 KGVYCLQY----DDQKIVSGLRDNTIKIWDKNTLECKRI----------------------------------------- 168 (435)
T ss_dssp CCEEEEEC----CSSEEEEEESSSCEEEEESSSCCEEEE-----------------------------------------
T ss_pred CcEEEEEE----CCCEEEEEeCCCeEEEEeCCCCeEEEE-----------------------------------------
Confidence 67888887 467999999999999999987653221
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
+.+|...|.+++| ++++|++| .||+|++||+++++...
T Consensus 169 ------------------------------------~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~--- 207 (435)
T 1p22_A 169 ------------------------------------LTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLN--- 207 (435)
T ss_dssp ------------------------------------ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEE---
T ss_pred ------------------------------------EcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEE---
Confidence 2567788999998 78899999 99999999999765443
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
.+.+|...|.+++|++ ..+++|+.||.|++||++++..... ...+.+|...|.+++|
T Consensus 208 -----~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~-------------~~~~~~~~~~v~~~~~-- 264 (435)
T 1p22_A 208 -----TLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITL-------------RRVLVGHRAAVNVVDF-- 264 (435)
T ss_dssp -----EECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEE-------------EEEECCCSSCEEEEEE--
T ss_pred -----EEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCcee-------------eeEecCCCCcEEEEEe--
Confidence 4567899999999974 5899999999999999988654210 1234567789999999
Q ss_pred CCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 352 NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 352 ~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
+++++++|+. +.|++||+++ ++.+..+..|... +.+++| ++++|++|+.||.|++||+.++
T Consensus 265 ~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~---------------v~~~~~--~~~~l~~g~~dg~i~iwd~~~~ 326 (435)
T 1p22_A 265 DDKYIVSASGDRTIKVWNTST-CEFVRTLNGHKRG---------------IACLQY--RDRLVVSGSSDNTIRLWDIECG 326 (435)
T ss_dssp ETTEEEEEETTSEEEEEETTT-CCEEEEEECCSSC---------------EEEEEE--ETTEEEEEETTSCEEEEETTTC
T ss_pred CCCEEEEEeCCCeEEEEECCc-CcEEEEEcCCCCc---------------EEEEEe--CCCEEEEEeCCCeEEEEECCCC
Confidence 6789998764 9999999997 8888888877654 336777 5789999999999999999987
Q ss_pred ceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeC---CCCCc---cccCCcccccccceEEEEEcCCCCEEEEE
Q 010256 431 SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKG---ADNSA---LDANGNAFDFSMKLLHLAWHPSENSIACA 504 (514)
Q Consensus 431 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~---~~~~~---~~~~~~~~~~~~~v~~~~~spd~~~l~~~ 504 (514)
. ...++.+|...+.++.+ ++++|++|+.||.|++.+- ..+.. .........|...|.+++| ++++|+++
T Consensus 327 ~-~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~ 401 (435)
T 1p22_A 327 A-CLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSS 401 (435)
T ss_dssp C-EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEEC
T ss_pred C-EEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEE
Confidence 4 44788999999999998 7889999999999999321 11100 0011223468899999999 78889988
Q ss_pred e-cCcEEEEe
Q 010256 505 A-SNSLYMYY 513 (514)
Q Consensus 505 ~-~~~~~i~~ 513 (514)
+ ++.+.+|+
T Consensus 402 s~Dg~i~iwd 411 (435)
T 1p22_A 402 SHDDTILIWD 411 (435)
T ss_dssp CSSSEEEEEC
T ss_pred eCCCEEEEEE
Confidence 8 66788885
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-29 Score=242.28 Aligned_cols=274 Identities=14% Similarity=0.164 Sum_probs=190.9
Q ss_pred ccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
.+.|++++| +++|.+|++|+.||.|++|++.+++......
T Consensus 28 ~~~V~~v~~--s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~-------------------------------------- 67 (447)
T 3dw8_B 28 ADIISTVEF--NHSGELLATGDKGGRVVIFQQEQENKIQSHS-------------------------------------- 67 (447)
T ss_dssp GGSEEEEEE--CSSSSEEEEEETTSEEEEEEECC-----CCC--------------------------------------
T ss_pred cCcEEEEEE--CCCCCEEEEEcCCCeEEEEEecCCCCCCccc--------------------------------------
Confidence 488999999 5678899999999999999998765211000
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCc------------cCeEEEEECCCC--CEEEEe-cCCeE
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHD------------YHINSISNNSDG--ETFISA-DDLRI 256 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~~~~~~~~--~~l~s~-~d~~i 256 (514)
.+..+ .... +.+|. ..|.+++|+|++ ..|+++ .|++|
T Consensus 68 ------------~~~~~---------------~~~~-~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i 119 (447)
T 3dw8_B 68 ------------RGEYN---------------VYST-FQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTI 119 (447)
T ss_dssp ------------CCCEE---------------EEEE-EECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCE
T ss_pred ------------cccee---------------Eecc-cccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeE
Confidence 00000 0001 13454 789999999998 788888 99999
Q ss_pred EEEeccCCCceeeeeccCC--------------------------------CcccccCCceEEEEEecCCCcEEEEEecC
Q 010256 257 NLWNLEISNQSFNIVDVKP--------------------------------ANMEDLTEVITSAEFHPTHCNMLAYSSSK 304 (514)
Q Consensus 257 ~iwd~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~i~~v~~~p~~~~~l~~~~~d 304 (514)
++||+.............. ....+|...|.+++|+|++ ++|++| .|
T Consensus 120 ~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d 197 (447)
T 3dw8_B 120 KLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDY-ETYLSA-DD 197 (447)
T ss_dssp EEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTS-SEEEEE-CS
T ss_pred EEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCC-CEEEEe-CC
Confidence 9999975332110000000 0135789999999999998 899998 79
Q ss_pred CeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCC-CEEEEEeC-CeEEEEEccCCCCc----eee
Q 010256 305 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG-RHILSRDY-MTLKLWDINMDSGP----VAT 378 (514)
Q Consensus 305 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~~~-~~i~iwd~~~~~~~----~~~ 378 (514)
+.|++||+++.... ...+... ...+.+|...|.+++|+|++ .+|++|+. +.|++||++. ++. +..
T Consensus 198 ~~i~iwd~~~~~~~---~~~~~~~-----~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~ 268 (447)
T 3dw8_B 198 LRINLWHLEITDRS---FNIVDIK-----PANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRA-SALCDRHSKL 268 (447)
T ss_dssp SEEEEEETTEEEEE---EEEEECC-----CSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTT-CSSSCTTCEE
T ss_pred CeEEEEECCCCCce---eeeeecc-----cccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcC-CccccceeeE
Confidence 99999999854322 1211111 11256778899999999998 89999865 9999999997 554 567
Q ss_pred eeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcce--------------
Q 010256 379 FQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPM-------------- 444 (514)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v-------------- 444 (514)
+..|........ + ......|.+++|+|+|++|++++. +.|++||+.+.......+.+|...+
T Consensus 269 ~~~~~~~~~~~~--~-~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~ 344 (447)
T 3dw8_B 269 FEEPEDPSNRSF--F-SEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFD 344 (447)
T ss_dssp ECCC-----CCH--H-HHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGC
T ss_pred eccCCCcccccc--c-cccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccccccc
Confidence 766653100000 0 000012559999999999999999 9999999987335557788875432
Q ss_pred -eEEEECCCCCceeecCCCCeEEEe
Q 010256 445 -RRQVQTPSRPSRPLGSLSGVVRRV 468 (514)
Q Consensus 445 -~~~~~~~~~~~l~s~s~d~~v~i~ 468 (514)
..++|+|++++|++++.|+.|+++
T Consensus 345 ~~~~~~s~~~~~l~s~s~dg~v~iw 369 (447)
T 3dw8_B 345 KFECCWNGSDSVVMTGSYNNFFRMF 369 (447)
T ss_dssp CCCEEECTTSSEEEEECSTTEEEEE
T ss_pred ceEEEECCCCCEEEEeccCCEEEEE
Confidence 248999999999999999999993
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-28 Score=235.39 Aligned_cols=279 Identities=9% Similarity=0.116 Sum_probs=205.9
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
..+.+++|+| ++.++++++.++.|++||+.+++........
T Consensus 123 ~~~~~~~~s~--~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~------------------------------------- 163 (433)
T 3bws_A 123 FQPKSVRFID--NTRLAIPLLEDEGMDVLDINSGQTVRLSPPE------------------------------------- 163 (433)
T ss_dssp SCBCCCEESS--SSEEEEEBTTSSSEEEEETTTCCEEEECCCH-------------------------------------
T ss_pred CCceEEEEeC--CCeEEEEeCCCCeEEEEECCCCeEeeecCcc-------------------------------------
Confidence 4467899954 6678888888999999999987644321110
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
...+|...|.+++|++++++++++ .|+.|++||+++.+...
T Consensus 164 -----------------------------------~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~--- 205 (433)
T 3bws_A 164 -----------------------------------KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKA--- 205 (433)
T ss_dssp -----------------------------------HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEE---
T ss_pred -----------------------------------cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEE---
Confidence 025677889999999999999999 89999999998655443
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
.+..|...+.+++|+|++..++++++.|+.|++||+++++.. ..+..+ ..+.+++|+|
T Consensus 206 -----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~----~~~~~~-------------~~~~~~~~~~ 263 (433)
T 3bws_A 206 -----TVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEI----RKTDKI-------------GLPRGLLLSK 263 (433)
T ss_dssp -----EEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEE----EECCCC-------------SEEEEEEECT
T ss_pred -----EEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEE----EEecCC-------------CCceEEEEcC
Confidence 334578889999999999434456668999999999887652 222221 3589999999
Q ss_pred CCCEEEEEe---------CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEE-EEEeCCCc
Q 010256 352 NGRHILSRD---------YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV-ATGSYSNL 421 (514)
Q Consensus 352 ~g~~l~~~~---------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~ 421 (514)
+|+++++++ ++.|++||+.+ ++.+..+. +... +..++|+|+++.+ ++++.|+.
T Consensus 264 ~g~~l~~~~~~~~~~~~~dg~i~~~d~~~-~~~~~~~~-~~~~---------------~~~~~~~~~g~~l~~~~~~~~~ 326 (433)
T 3bws_A 264 DGKELYIAQFSASNQESGGGRLGIYSMDK-EKLIDTIG-PPGN---------------KRHIVSGNTENKIYVSDMCCSK 326 (433)
T ss_dssp TSSEEEEEEEESCTTCSCCEEEEEEETTT-TEEEEEEE-EEEC---------------EEEEEECSSTTEEEEEETTTTE
T ss_pred CCCEEEEEECCCCccccCCCeEEEEECCC-CcEEeecc-CCCC---------------cceEEECCCCCEEEEEecCCCE
Confidence 999988864 57999999986 65555442 2211 2379999999755 56689999
Q ss_pred EEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCC---------------CCeEEEeeCCCCCccccCCcccccc
Q 010256 422 FRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL---------------SGVVRRVKGADNSALDANGNAFDFS 486 (514)
Q Consensus 422 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~---------------d~~v~i~~~~~~~~~~~~~~~~~~~ 486 (514)
|++||+.+++. ...+. +...+..++++|+++++++++. ||.|++++..... .. ..+...
T Consensus 327 v~v~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~---~~-~~~~~~ 400 (433)
T 3bws_A 327 IEVYDLKEKKV-QKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT---VK-EFWEAG 400 (433)
T ss_dssp EEEEETTTTEE-EEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE---EE-EEEECS
T ss_pred EEEEECCCCcE-EEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc---EE-EEecCC
Confidence 99999997643 34444 6677899999999998887766 5789984432211 11 112235
Q ss_pred cceEEEEEcCCCCEEEEEe--cCcEEEEe
Q 010256 487 MKLLHLAWHPSENSIACAA--SNSLYMYY 513 (514)
Q Consensus 487 ~~v~~~~~spd~~~l~~~~--~~~~~i~~ 513 (514)
..+.+++|+||+++|++++ ++.+.+|.
T Consensus 401 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~~ 429 (433)
T 3bws_A 401 NQPTGLDVSPDNRYLVISDFLDHQIRVYR 429 (433)
T ss_dssp SSEEEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred CCCceEEEcCCCCEEEEEECCCCeEEEEE
Confidence 6789999999999998765 78888886
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-28 Score=230.82 Aligned_cols=278 Identities=13% Similarity=0.125 Sum_probs=205.6
Q ss_pred CeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEEEeeCCCCc
Q 010256 48 DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSA 127 (514)
Q Consensus 48 ~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 127 (514)
.++++++.|+.|++||+.+++ ....+..| ..+.+++| +++++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~-----------------------~~~~~~~~-------------~~~~~~~~--s~dg~ 44 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNK-----------------------VTATIPVG-------------SNPMGAVI--SPDGT 44 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTE-----------------------EEEEEECS-------------SSEEEEEE--CTTSS
T ss_pred EEEEEcCCCCEEEEEECCCCe-----------------------EEEEeecC-------------CCcceEEE--CCCCC
Confidence 468889999999999998766 33455555 44899999 56777
Q ss_pred EE-EEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCc
Q 010256 128 LY-LLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS 206 (514)
Q Consensus 128 ~l-~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 206 (514)
++ ++++.|+.|++||+.+++.......+. .+. .++|+|+++.+ ++++..++.
T Consensus 45 ~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~---------~v~-------~~~~spdg~~l-----------~~~~~~~~~ 97 (391)
T 1l0q_A 45 KVYVANAHSNDVSIIDTATNNVIATVPAGS---------SPQ-------GVAVSPDGKQV-----------YVTNMASST 97 (391)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEEECSS---------SEE-------EEEECTTSSEE-----------EEEETTTTE
T ss_pred EEEEECCCCCeEEEEECCCCeEEEEEECCC---------Ccc-------ceEECCCCCEE-----------EEEECCCCE
Confidence 76 566799999999999998777665442 233 78999999976 134556799
Q ss_pred EEeceeeccccccccccccccccccCccCeEEEEECCCCCEE-EEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCc
Q 010256 207 LRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF-ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEV 284 (514)
Q Consensus 207 i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 284 (514)
|++|| +...+ .... ..+...+.+++|+|+++.| +++ .++.|++||+++++.... +. ....
T Consensus 98 v~v~d-~~~~~------~~~~--~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~--------~~-~~~~ 159 (391)
T 1l0q_A 98 LSVID-TTSNT------VAGT--VKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT--------VS-VGRS 159 (391)
T ss_dssp EEEEE-TTTTE------EEEE--EECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE--------EE-CCSS
T ss_pred EEEEE-CCCCe------EEEE--EeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE--------Ee-cCCC
Confidence 99999 33221 1122 1234568999999999987 566 799999999986554322 22 2355
Q ss_pred eEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe----
Q 010256 285 ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD---- 360 (514)
Q Consensus 285 i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~---- 360 (514)
+.+++|+|++..++++++.++.|++||+++++.. ..+. +...+.+++|+|+++++++++
T Consensus 160 ~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~----~~~~-------------~~~~~~~~~~~~~g~~l~~~~~~~~ 222 (391)
T 1l0q_A 160 PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI----DTVK-------------VEAAPSGIAVNPEGTKAYVTNVDKY 222 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE----EEEE-------------CSSEEEEEEECTTSSEEEEEEECSS
T ss_pred cceEEECCCCCEEEEEeCCCCEEEEEECCCCeEE----EEEe-------------cCCCccceEECCCCCEEEEEecCcC
Confidence 7999999999434477888999999999987642 2222 224688999999999888864
Q ss_pred CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEE-EEEeCCCcEEEEecCCCceeeeeecC
Q 010256 361 YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV-ATGSYSNLFRVFGCSEGSAESTTLEA 439 (514)
Q Consensus 361 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~ 439 (514)
++.|++||+.+ ++.+..+..+.. +.+++|+|++++| ++++.|+.|++||+.++ .....+..
T Consensus 223 ~~~v~~~d~~~-~~~~~~~~~~~~----------------~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~-~~~~~~~~ 284 (391)
T 1l0q_A 223 FNTVSMIDTGT-NKITARIPVGPD----------------PAGIAVTPDGKKVYVALSFXNTVSVIDTATN-TITATMAV 284 (391)
T ss_dssp CCEEEEEETTT-TEEEEEEECCSS----------------EEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEEC
T ss_pred CCcEEEEECCC-CeEEEEEecCCC----------------ccEEEEccCCCEEEEEcCCCCEEEEEECCCC-cEEEEEEC
Confidence 49999999987 777777765543 2379999999987 57788999999999987 44466666
Q ss_pred CCcc
Q 010256 440 SKNP 443 (514)
Q Consensus 440 ~~~~ 443 (514)
+..+
T Consensus 285 ~~~~ 288 (391)
T 1l0q_A 285 GKNP 288 (391)
T ss_dssp SSSE
T ss_pred CcCC
Confidence 6554
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-29 Score=254.60 Aligned_cols=248 Identities=16% Similarity=0.175 Sum_probs=195.7
Q ss_pred eeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccC
Q 010256 95 EFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA 174 (514)
Q Consensus 95 ~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 174 (514)
.+.+|. +.|++++| ++++.+|++++.||.|++||+.++......
T Consensus 4 ~l~gH~------------~~V~~l~~--s~dg~~latg~~dg~I~vwd~~~~~~~~~~---------------------- 47 (753)
T 3jro_A 4 IANAHN------------ELIHDAVL--DYYGKRLATCSSDKTIKIFEVEGETHKLID---------------------- 47 (753)
T ss_dssp ----CC------------CCEEEECC--CSSSCCEEEEETTTEEEEEEEETTEEEEEE----------------------
T ss_pred ecccCc------------ceeEEEEE--CCCCCeEEEEECCCcEEEEecCCCCCccce----------------------
Confidence 467887 89999999 567779999999999999998744321110
Q ss_pred CceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC--CCEEEEe-
Q 010256 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD--GETFISA- 251 (514)
Q Consensus 175 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~- 251 (514)
. +.+|.+.|.+++|+|+ +++|++|
T Consensus 48 ----------------------------------------------------~-l~~h~~~V~~l~~s~~~~~~~l~s~s 74 (753)
T 3jro_A 48 ----------------------------------------------------T-LTGHEGPVWRVDWAHPKFGTILASCS 74 (753)
T ss_dssp ----------------------------------------------------E-ECCCSSCEEEEEECCTTSCSEEEEEE
T ss_pred ----------------------------------------------------e-ccCCcCceEEEEecCCCCCCEEEEEe
Confidence 1 2578899999999988 9999999
Q ss_pred cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecC--CCcEEEEEecCCeEEEEEcCCCccccccccceeccC
Q 010256 252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT--HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 329 (514)
Q Consensus 252 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 329 (514)
.||.|++||+++++.... ..+..|...|.+++|+|+ + ..+++|+.||.|++||++++....
T Consensus 75 ~Dg~I~vwd~~~~~~~~~------~~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~~~~~~~---------- 137 (753)
T 3jro_A 75 YDGKVLIWKEENGRWSQI------AVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTS---------- 137 (753)
T ss_dssp TTSCEEEEEEETTEEEEE------EEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCSSSCCC----------
T ss_pred CCCeEEEEECCCCccccc------ccccCCCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEeecCCCcc----------
Confidence 999999999986542111 145678999999999999 7 899999999999999998864321
Q ss_pred CCCccceeeccccceeEEEEec-------------CCCEEEEEe-CCeEEEEEccCCC---Cceeeeeeccccccccccc
Q 010256 330 APGTRSFFTEIIASISDIKFAR-------------NGRHILSRD-YMTLKLWDINMDS---GPVATFQVHEHLRPKLCDL 392 (514)
Q Consensus 330 ~~~~~~~~~~~~~~i~~~~~s~-------------~g~~l~~~~-~~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~ 392 (514)
...+.+|...|.+++|+| ++.++++|+ +|.|++||++... .....+..|...
T Consensus 138 ----~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~------- 206 (753)
T 3jro_A 138 ----PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW------- 206 (753)
T ss_dssp ----CEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC-------
T ss_pred ----eeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCc-------
Confidence 112455668999999999 588999876 4999999998722 233455555543
Q ss_pred cccCCccceeeEEEcCC---CCEEEEEeCCCcEEEEecCCCce----eeeeecCCCcceeEEEECCCCCceeecCCCCeE
Q 010256 393 YENDSIFDKFECCLSGD---GGRVATGSYSNLFRVFGCSEGSA----ESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVV 465 (514)
Q Consensus 393 ~~~~~~~~v~~~~~s~~---~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v 465 (514)
|.+++|+|+ +++|++++.||.|++||+.++.. .......|...+.+++|+|+++++++++.||.|
T Consensus 207 --------V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I 278 (753)
T 3jro_A 207 --------VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKV 278 (753)
T ss_dssp --------EEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCE
T ss_pred --------EEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEE
Confidence 459999999 89999999999999999987632 223345688999999999999999999999999
Q ss_pred EE
Q 010256 466 RR 467 (514)
Q Consensus 466 ~i 467 (514)
++
T Consensus 279 ~v 280 (753)
T 3jro_A 279 TL 280 (753)
T ss_dssp EC
T ss_pred EE
Confidence 99
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-27 Score=228.14 Aligned_cols=280 Identities=9% Similarity=0.047 Sum_probs=210.0
Q ss_pred ccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccc
Q 010256 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (514)
.....+.+++|+|++.++++++.++.|++||+.+++.... .....+.+|.
T Consensus 120 ~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~------------------~~~~~~~~~~------------ 169 (433)
T 3bws_A 120 KTGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRL------------------SPPEKYKKKL------------ 169 (433)
T ss_dssp ECSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEE------------------CCCHHHHTTC------------
T ss_pred cCCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeee------------------cCcccccccC------------
Confidence 4456677999999888888888999999999987764200 0001345666
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
..|.+++| ++++.++++++.|+.|++||+.+++.....
T Consensus 170 ~~v~~~~~--~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~---------------------------------------- 207 (433)
T 3bws_A 170 GFVETISI--PEHNELWVSQMQANAVHVFDLKTLAYKATV---------------------------------------- 207 (433)
T ss_dssp CEEEEEEE--GGGTEEEEEEGGGTEEEEEETTTCCEEEEE----------------------------------------
T ss_pred CceeEEEE--cCCCEEEEEECCCCEEEEEECCCceEEEEE----------------------------------------
Confidence 78999999 567789999999999999999876533221
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEE-Ee-cCCeEEEEeccCCCceeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI-SA-DDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~-~d~~i~iwd~~~~~~~~~~ 270 (514)
..|...+.+++|+|+++.++ ++ .++.|++||+++++....
T Consensus 208 -------------------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~- 249 (433)
T 3bws_A 208 -------------------------------------DLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRK- 249 (433)
T ss_dssp -------------------------------------ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE-
T ss_pred -------------------------------------cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEE-
Confidence 24556788999999999885 55 799999999986544321
Q ss_pred eccCCCcccccCCceEEEEEecCCCcEEEEEe--------cCCeEEEEEcCCCccccccccceeccCCCCccceeecccc
Q 010256 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSS--------SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (514)
Q Consensus 271 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~--------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (514)
+. ....+.+++|+|++ +.+++++ .|+.|++||+++++.. .. ..|..
T Consensus 250 -------~~-~~~~~~~~~~~~~g-~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~----~~-------------~~~~~ 303 (433)
T 3bws_A 250 -------TD-KIGLPRGLLLSKDG-KELYIAQFSASNQESGGGRLGIYSMDKEKLI----DT-------------IGPPG 303 (433)
T ss_dssp -------CC-CCSEEEEEEECTTS-SEEEEEEEESCTTCSCCEEEEEEETTTTEEE----EE-------------EEEEE
T ss_pred -------ec-CCCCceEEEEcCCC-CEEEEEECCCCccccCCCeEEEEECCCCcEE----ee-------------ccCCC
Confidence 22 24458999999999 7888777 4889999999887642 11 12335
Q ss_pred ceeEEEEecCCCEEEE-Ee-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeC--
Q 010256 343 SISDIKFARNGRHILS-RD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-- 418 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~-~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-- 418 (514)
.+.+++|+|+++.++. +. ++.|++||+.+ ++.+..+..... +.+++|+|+|++|++++.
T Consensus 304 ~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~-~~~~~~~~~~~~----------------~~~~~~s~dg~~l~~~~~~~ 366 (433)
T 3bws_A 304 NKRHIVSGNTENKIYVSDMCCSKIEVYDLKE-KKVQKSIPVFDK----------------PNTIALSPDGKYLYVSCRGP 366 (433)
T ss_dssp CEEEEEECSSTTEEEEEETTTTEEEEEETTT-TEEEEEEECSSS----------------EEEEEECTTSSEEEEEECCC
T ss_pred CcceEEECCCCCEEEEEecCCCEEEEEECCC-CcEEEEecCCCC----------------CCeEEEcCCCCEEEEEecCC
Confidence 7889999999986654 44 49999999986 666666542221 338999999999888776
Q ss_pred -------------CCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecC-CCCeEEE
Q 010256 419 -------------SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGS-LSGVVRR 467 (514)
Q Consensus 419 -------------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s-~d~~v~i 467 (514)
||.|++||+.+++. ...+.. ...+..++|+|++++|++++ .|+.|++
T Consensus 367 ~~~~~~~~~~g~~dg~v~~~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v 427 (433)
T 3bws_A 367 NHPTEGYLKKGLVLGKVYVIDTTTDTV-KEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRV 427 (433)
T ss_dssp CCTTTCTTSCCSSCCEEEEEETTTTEE-EEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEE
T ss_pred CccccccccccccceEEEEEECCCCcE-EEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEE
Confidence 57999999988743 355555 45788999999999998776 4999998
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.9e-27 Score=217.41 Aligned_cols=226 Identities=10% Similarity=0.070 Sum_probs=159.3
Q ss_pred eEEEEECCCCCEEE-Ee-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcC
Q 010256 236 INSISNNSDGETFI-SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (514)
Q Consensus 236 v~~~~~~~~~~~l~-s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~ 313 (514)
+..+++.++++.++ ++ .|++|++||+.+++....+ . +...|.++.|+++. ++++ .|+.|++||+.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~--------~-~~~~v~~v~~~~~~---~~~~-~~~~i~i~d~~ 127 (355)
T 3vu4_A 61 LSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRI--------K-VDAPVKDLFLSREF---IVVS-YGDVISVFKFG 127 (355)
T ss_dssp CCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEE--------E-CSSCEEEEEECSSE---EEEE-ETTEEEEEESS
T ss_pred eEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEE--------E-CCCceEEEEEcCCE---EEEE-EcCEEEEEECC
Confidence 55677788877774 45 7899999999876554322 2 56689999999864 3333 47899999998
Q ss_pred CC-ccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEE--Ee-CCeEEEEEccCCCC---------------
Q 010256 314 QS-ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS--RD-YMTLKLWDINMDSG--------------- 374 (514)
Q Consensus 314 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~--~~-~~~i~iwd~~~~~~--------------- 374 (514)
++ +.. ..+.. +...+++++ .+++. |+ +|.|++||+.. +.
T Consensus 128 ~~~~~~----~~~~~---------------~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~-~~~~~~~~~~~~~~~~~ 185 (355)
T 3vu4_A 128 NPWKRI----TDDIR---------------FGGVCEFSN--GLLVYSNEFNLGQIHITKLQS-SGSATTQDQGVQQKAIL 185 (355)
T ss_dssp TTCCBS----SCCEE---------------EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------
T ss_pred CCceee----EEecc---------------CCceEEEEc--cEEEEeCCCcCcEEEEEECCC-CCccccccccccccccC
Confidence 87 432 22221 233456676 56665 34 49999999986 33
Q ss_pred c-eeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCc-EEEEecCCCceeeeeec-C-CCcceeEEEEC
Q 010256 375 P-VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNL-FRVFGCSEGSAESTTLE-A-SKNPMRRQVQT 450 (514)
Q Consensus 375 ~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~-~-~~~~v~~~~~~ 450 (514)
+ +..+.+|... |.+++|+|+|++|++|+.|++ |++||+.+++.. .++. + |..+|.+++|+
T Consensus 186 p~~~~~~~h~~~---------------v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~-~~~~~g~h~~~v~~~~~s 249 (355)
T 3vu4_A 186 GKGVLIKAHTNP---------------IKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLV-REFRRGLDRADVVDMKWS 249 (355)
T ss_dssp -CCEEECCCSSC---------------EEEEEECTTSSEEEEEETTCSEEEEEETTTCCEE-EEEECTTCCSCEEEEEEC
T ss_pred cccEEEEccCCc---------------eEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE-EEEEcCCCCCcEEEEEEC
Confidence 2 5667777654 459999999999999999998 999999988554 5666 5 99999999999
Q ss_pred CCCCceeecCCCCeEEEeeCCCCCc---cccCC----cc-----------c--ccccceEEEEEcCCCCEEEEEecCc-E
Q 010256 451 PSRPSRPLGSLSGVVRRVKGADNSA---LDANG----NA-----------F--DFSMKLLHLAWHPSENSIACAASNS-L 509 (514)
Q Consensus 451 ~~~~~l~s~s~d~~v~i~~~~~~~~---~~~~~----~~-----------~--~~~~~v~~~~~spd~~~l~~~~~~~-~ 509 (514)
|++++|++++.|++|++.+-..... ..+.. .. + ........++|+||+++|++++.++ +
T Consensus 250 ~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~ 329 (355)
T 3vu4_A 250 TDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMI 329 (355)
T ss_dssp TTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEE
T ss_pred CCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeE
Confidence 9999999999999999933221110 00000 00 0 1122346799999999999888554 4
Q ss_pred EEE
Q 010256 510 YMY 512 (514)
Q Consensus 510 ~i~ 512 (514)
.+|
T Consensus 330 ~~~ 332 (355)
T 3vu4_A 330 ETF 332 (355)
T ss_dssp EEE
T ss_pred EEE
Confidence 555
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-27 Score=209.72 Aligned_cols=274 Identities=13% Similarity=0.117 Sum_probs=176.1
Q ss_pred ceEEEEEcCCCC---eEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCC-Ccccc-------
Q 010256 37 IISAIEFDKSGD---HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHE-PEFDY------- 105 (514)
Q Consensus 37 ~V~~~~~s~~g~---~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~~~~------- 105 (514)
.+.++.|-.-|- -+++++. ..|++|+..++. ..+...++++|+ |.+..
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~--------------------~~~~~~~~~~~~~~v~~~~~~~~~~ 99 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITACE-DVVSLWKALDAW--------------------QWEKLYTWHFAEVPVLQIVPVPDVY 99 (356)
T ss_dssp EEEEEEEC----CEEEEEEEES-SEEEEEEESSSS--------------------BEEEEEEEECCSSCEEEECCCTTCC
T ss_pred EEeeeeeccCCCCccEEEEecc-ceEEEcccCCCc--------------------cceeeEEEeccCceeEEEEEcCccc
Confidence 567777766443 5666664 579999998762 112334444444 11110
Q ss_pred ------ccccccccceeEEEEeeCCC----CcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCC
Q 010256 106 ------LKSLEIEEKINKIRWCQSAN----SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAI 175 (514)
Q Consensus 106 ------~~~~~~~~~v~~i~~~~~~~----~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 175 (514)
+-+++. ..|+.+++ +++ ++++++++. .+++|++.+++....
T Consensus 100 ~~~~~~~~~~~~-~~v~sla~--spd~~~~~~~l~s~g~--~~~v~~l~~g~lv~s------------------------ 150 (356)
T 2w18_A 100 NLVCVALGNLEI-REIRALFC--SSDDESEKQVLLKSGN--IKAVLGLTKRRLVSS------------------------ 150 (356)
T ss_dssp SCEEEEECSSSE-EEEEEECC--------CCEEEEEEEE--EEEEEEETTTEEEEE------------------------
T ss_pred ceeeeeeccccc-cceEEEEE--CCCccccccEEEeCCC--eEEEEecCCCcEEEe------------------------
Confidence 001111 56888888 456 778888774 488898877664332
Q ss_pred ceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC---CCCEEEEe-
Q 010256 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS---DGETFISA- 251 (514)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~- 251 (514)
...+.++.|++|+ +... ++.... +.+|...+..++|++ ++.+|+++
T Consensus 151 -----------------------s~~g~d~~V~~~~-~s~d-----G~~~~s-~~~~~~~v~~l~fs~~~g~~~~LaSgS 200 (356)
T 2w18_A 151 -----------------------SGTLSDQQVEVMT-FAED-----GGGKEN-QFLMPPEETILTFAEVQGMQEALLGTT 200 (356)
T ss_dssp -----------------------ESSSTTCEEEEEE-ECTT-----SCEEEE-EEECCCSSCEEEEEEEETSTTEEEEEE
T ss_pred -----------------------cccCCCCcEEEEE-ECCC-----Cceeee-eccCCCceeeEEeeccCCCCceEEEec
Confidence 1123567777777 3211 111111 257888899999999 78999998
Q ss_pred cCCeEEEEeccCCCceeeeeccCCCccccc---CCceEEEEEecCCCcEE------------EEEecCCeEEEEEcCCCc
Q 010256 252 DDLRINLWNLEISNQSFNIVDVKPANMEDL---TEVITSAEFHPTHCNML------------AYSSSKGSIRLIDMRQSA 316 (514)
Q Consensus 252 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~i~~v~~~p~~~~~l------------~~~~~dg~i~~wd~~~~~ 316 (514)
.|++|++||+++++.... +.+| ...+.+++|+|++ .++ ++|+.|++|++||..+++
T Consensus 201 ~D~TIkIWDl~TGk~l~t--------L~g~~~~v~~v~~vafSpdG-~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk 271 (356)
T 2w18_A 201 IMNNIVIWNLKTGQLLKK--------MHIDDSYQASVCHKAYSEMG-LLFIVLSHPCAKESESLRSPVFQLIVINPKTTL 271 (356)
T ss_dssp TTSEEEEEETTTCCEEEE--------EECCC---CCCEEEEEEETT-EEEEEEC------------CCEEEEEEETTTTE
T ss_pred CCCcEEEEECCCCcEEEE--------EcCCCcceeeeEEEEECCCC-CEEEEeccCCCcceeeccCCCcEEEEEECCCCE
Confidence 999999999998765543 3332 3467888999998 665 668889999999999887
Q ss_pred cccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeecccccccccccccc
Q 010256 317 LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYEN 395 (514)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (514)
... .+... ...+|...+.+..++ +.++++++ |++|+|||+.+ ++.+.++.+|....
T Consensus 272 ~l~----v~~~~-------~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~t-Gk~l~tL~gH~~~v--------- 328 (356)
T 2w18_A 272 SVG----VMLYC-------LPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLL-GQCTALLPPVSDQH--------- 328 (356)
T ss_dssp EEE----EEEEC-------CCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTT-CSEEEEECCC--CC---------
T ss_pred EEE----EEEee-------ccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCC-CcEEEEecCCCCCe---------
Confidence 532 11100 002343444444444 88899986 59999999998 99999998886532
Q ss_pred CCccceeeEEEcCCCCEEEEEeCCCcEEEEec
Q 010256 396 DSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (514)
Q Consensus 396 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 427 (514)
+..++|+|||++|++|+.|++|+|||+
T Consensus 329 -----vs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 329 -----WSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp -----CCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred -----EEEEEECCCCCEEEEEECCCcEEEecC
Confidence 115899999999999999999999995
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-27 Score=210.28 Aligned_cols=194 Identities=11% Similarity=0.039 Sum_probs=140.0
Q ss_pred cCccCeEEEEECCCCCEEEEe---cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEec---CCCcEEEEEecC
Q 010256 231 AHDYHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP---THCNMLAYSSSK 304 (514)
Q Consensus 231 ~h~~~v~~~~~~~~~~~l~s~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p---~~~~~l~~~~~d 304 (514)
+|...|.++ ++++.+.++ .|+.|++|++...++... ++..|...++.++|+| ++ .+|++++.|
T Consensus 134 g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~-------s~~~~~~~v~~l~fs~~~g~~-~~LaSgS~D 202 (356)
T 2w18_A 134 GNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKE-------NQFLMPPEETILTFAEVQGMQ-EALLGTTIM 202 (356)
T ss_dssp EEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEE-------EEEECCCSSCEEEEEEEETST-TEEEEEETT
T ss_pred CCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceee-------eeccCCCceeeEEeeccCCCC-ceEEEecCC
Confidence 344444444 566666664 499999999964443322 3456888888889988 66 899999999
Q ss_pred CeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEE------------EEe-CCeEEEEEccC
Q 010256 305 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL------------SRD-YMTLKLWDINM 371 (514)
Q Consensus 305 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~------------~~~-~~~i~iwd~~~ 371 (514)
++|+|||+++++. ++++..+.. +...+.+++|+|+|++++ +|+ |++|++||..+
T Consensus 203 ~TIkIWDl~TGk~----l~tL~g~~~---------~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t 269 (356)
T 2w18_A 203 NNIVIWNLKTGQL----LKKMHIDDS---------YQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT 269 (356)
T ss_dssp SEEEEEETTTCCE----EEEEECCC------------CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTT
T ss_pred CcEEEEECCCCcE----EEEEcCCCc---------ceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC
Confidence 9999999999986 444443211 124688889999999874 454 48999999987
Q ss_pred CCCceeeee-----eccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCccee-
Q 010256 372 DSGPVATFQ-----VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMR- 445 (514)
Q Consensus 372 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~- 445 (514)
++.+..+. +|... .+..+.++.++++++.|++|+|||+.+++. ..++++|...+.
T Consensus 270 -gk~l~v~~~~~p~Gh~~~-----------------~lsg~~sg~~lASgS~DgTIkIWDl~tGk~-l~tL~gH~~~vvs 330 (356)
T 2w18_A 270 -TLSVGVMLYCLPPGQAGR-----------------FLEGDVKDHCAAAILTSGTIAIWDLLLGQC-TALLPPVSDQHWS 330 (356)
T ss_dssp -TEEEEEEEECCCTTCCCC-----------------EEEEEEETTEEEEEETTSCEEEEETTTCSE-EEEECCC--CCCC
T ss_pred -CEEEEEEEeeccCCCcce-----------------eEccccCCCEEEEEcCCCcEEEEECCCCcE-EEEecCCCCCeEE
Confidence 76665542 22211 122333488999999999999999999854 478999987655
Q ss_pred EEEECCCCCceeecCCCCeEEE
Q 010256 446 RQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 446 ~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.++|+|++++|++|+.|++|++
T Consensus 331 ~vafSPDG~~LaSGS~D~TIkl 352 (356)
T 2w18_A 331 FVKWSGTDSHLLAGQKDGNIFV 352 (356)
T ss_dssp EEEECSSSSEEEEECTTSCEEE
T ss_pred EEEECCCCCEEEEEECCCcEEE
Confidence 5899999999999999999999
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-28 Score=224.31 Aligned_cols=188 Identities=10% Similarity=0.046 Sum_probs=134.4
Q ss_pred ccCCceEEEEEec--CCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEE
Q 010256 280 DLTEVITSAEFHP--THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL 357 (514)
Q Consensus 280 ~~~~~i~~v~~~p--~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 357 (514)
.|...|.+++|+| ++ ++|++++.||.|++||+++++.. ..+. ..|...+.+++|+|+|.+|+
T Consensus 123 ~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~----~~~~-----------~~~~~~i~~~~~~pdg~~la 186 (343)
T 3lrv_A 123 DSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDSQY----IVHS-----------AKSDVEYSSGVLHKDSLLLA 186 (343)
T ss_dssp CCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSCEE----EEEC-----------CCSSCCCCEEEECTTSCEEE
T ss_pred CCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCcEE----EEEe-----------cCCCCceEEEEECCCCCEEE
Confidence 4668899999999 98 89999999999999999987652 1111 12335799999999999999
Q ss_pred EEe-CCeEEEEEccCCCCce-eeeee-ccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceee
Q 010256 358 SRD-YMTLKLWDINMDSGPV-ATFQV-HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES 434 (514)
Q Consensus 358 ~~~-~~~i~iwd~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 434 (514)
+|+ |+.|++||+++ ++.+ ..+.. |... |.+++|+|+|.+|++++. +.|++||+.++....
T Consensus 187 sg~~dg~i~iwd~~~-~~~~~~~~~~~h~~~---------------v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~ 249 (343)
T 3lrv_A 187 LYSPDGILDVYNLSS-PDQASSRFPVDEEAK---------------IKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTL 249 (343)
T ss_dssp EECTTSCEEEEESSC-TTSCCEECCCCTTSC---------------EEEEEECTTSSEEEEEES-SBEEEEETTSSTTCB
T ss_pred EEcCCCEEEEEECCC-CCCCccEEeccCCCC---------------EEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcce
Confidence 976 49999999997 6655 67766 6544 459999999999999994 599999999874431
Q ss_pred --eeecCCCccee--EEEECCCCCceeecCC-CCeEEEeeCCCCCccccCCcccccccceEEEEEcC---CCCEEEEEec
Q 010256 435 --TTLEASKNPMR--RQVQTPSRPSRPLGSL-SGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHP---SENSIACAAS 506 (514)
Q Consensus 435 --~~~~~~~~~v~--~~~~~~~~~~l~s~s~-d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---d~~~l~~~~~ 506 (514)
..+..|...+. +++|+|++++|++++. |+.+++++-..... ... ...+..++|+| +.+.|++++.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~l~~~~~ 322 (343)
T 3lrv_A 250 AYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTK------NWT-KDEESALCLQSDTADFTDMDVVCG 322 (343)
T ss_dssp SSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTC------SEE-EEEEEECCC----CCCCEEEEEEE
T ss_pred eecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccccc------ceE-ecCceeEecCccccccceeEEEec
Confidence 22223444554 5999999999999988 99999932211110 000 14566777887 7777776653
Q ss_pred C
Q 010256 507 N 507 (514)
Q Consensus 507 ~ 507 (514)
+
T Consensus 323 d 323 (343)
T 3lrv_A 323 D 323 (343)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-26 Score=223.37 Aligned_cols=327 Identities=10% Similarity=0.073 Sum_probs=232.1
Q ss_pred EEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEEEe
Q 010256 42 EFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWC 121 (514)
Q Consensus 42 ~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~ 121 (514)
+|+|++.++++++.|++|.+||..+++. +..+..+. . +..++|
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~-----------------------~~~i~~g~------------~-~~~v~~- 186 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKI-----------------------VKVIDTGY------------A-VHISRM- 186 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCE-----------------------EEEEECST------------T-EEEEEE-
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceE-----------------------EEEEecCc------------c-cceEEE-
Confidence 4889999999999999999999887763 34454222 2 888999
Q ss_pred eCCCCcEEEEeeCCCeEEEEEc--CccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCccc
Q 010256 122 QSANSALYLLSTNDKTIKLWKV--QEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSF 199 (514)
Q Consensus 122 ~~~~~~~l~s~~~d~~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 199 (514)
+++|+++++++.|+.|++||+ .+++......
T Consensus 187 -spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~---------------------------------------------- 219 (543)
T 1nir_A 187 -SASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK---------------------------------------------- 219 (543)
T ss_dssp -CTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE----------------------------------------------
T ss_pred -CCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe----------------------------------------------
Confidence 678899999999999999999 6655332211
Q ss_pred CCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC----CCCEEEEe--cCCeEEEEeccCCCceeeeecc
Q 010256 200 PPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS----DGETFISA--DDLRINLWNLEISNQSFNIVDV 273 (514)
Q Consensus 200 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~ 273 (514)
+...+..++|+| +|++++++ .+++|.+||..+.+.... +..
T Consensus 220 --------------------------------~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~-i~~ 266 (543)
T 1nir_A 220 --------------------------------IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQI-VST 266 (543)
T ss_dssp --------------------------------CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEE-EEC
T ss_pred --------------------------------cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccccee-ecc
Confidence 113467899999 99999888 489999999986654432 221
Q ss_pred CCCccc---cc-CCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 274 KPANME---DL-TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 274 ~~~~~~---~~-~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
...... -| ...+.++.++|+++.++++...++.|.+||+.+.+.+. ...+. +...+.++.|
T Consensus 267 ~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~--~~~i~-------------~~~~~~~~~~ 331 (543)
T 1nir_A 267 RGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT--VTSIG-------------AAPFLHDGGW 331 (543)
T ss_dssp CEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE--EEEEE-------------CCSSCCCEEE
T ss_pred cCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcce--eEEec-------------cCcCccCceE
Confidence 110000 12 23789999999886788888889999999998765321 11111 2245778999
Q ss_pred ecCCCEEEEE-e-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEE-EcCC-CCEEEEEe-CCCcEEE
Q 010256 350 ARNGRHILSR-D-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC-LSGD-GGRVATGS-YSNLFRV 424 (514)
Q Consensus 350 s~~g~~l~~~-~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~-~~~l~s~~-~dg~i~i 424 (514)
+|+|++++++ . +++|.+||..+ ++++..+......-. .. ... ++|+ +.+++++. .|++|.+
T Consensus 332 spdg~~l~va~~~~~~v~v~D~~t-g~l~~~i~~g~~ph~--------g~-----g~~~~~p~~g~~~~s~~~~d~~V~v 397 (543)
T 1nir_A 332 DSSHRYFMTAANNSNKVAVIDSKD-RRLSALVDVGKTPHP--------GR-----GANFVHPKYGPVWSTSHLGDGSISL 397 (543)
T ss_dssp CTTSCEEEEEEGGGTEEEEEETTT-TEEEEEEECSSSBCC--------TT-----CEEEEETTTEEEEEEEBSSSSEEEE
T ss_pred CCCCCEEEEEecCCCeEEEEECCC-CeEEEeeccCCCCCC--------CC-----CcccCCCCCccEEEeccCCCceEEE
Confidence 9999987764 3 48999999997 777777764221100 00 122 4677 66677775 6899999
Q ss_pred EecCCC------ceeeeeecCCCcceeEEEECCCCCceeecC-------CCCeEEEeeCCCCCcc-c-cCCc----cccc
Q 010256 425 FGCSEG------SAESTTLEASKNPMRRQVQTPSRPSRPLGS-------LSGVVRRVKGADNSAL-D-ANGN----AFDF 485 (514)
Q Consensus 425 wd~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s-------~d~~v~i~~~~~~~~~-~-~~~~----~~~~ 485 (514)
||+.+. .+...++.+|...+..+.++|++++|.+++ .+++|.+++....... + +... ..++
T Consensus 398 ~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~ 477 (543)
T 1nir_A 398 IGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEG 477 (543)
T ss_dssp EECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSS
T ss_pred EEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCC
Confidence 999872 244588889988888999999999999987 3779999554433211 1 1000 1245
Q ss_pred ccceEEEEEcCCCCEEEEEe------cCcEEEEeC
Q 010256 486 SMKLLHLAWHPSENSIACAA------SNSLYMYYA 514 (514)
Q Consensus 486 ~~~v~~~~~spd~~~l~~~~------~~~~~i~~~ 514 (514)
...+.+++|+|||+.|+++. ++.+.||..
T Consensus 478 ~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~ 512 (543)
T 1nir_A 478 AKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD 512 (543)
T ss_dssp CCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEET
T ss_pred CCceEeccCCCCCCEEEEEeecCCCCCCeEEEEEC
Confidence 78999999999999999763 477888863
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.95 E-value=9e-27 Score=221.02 Aligned_cols=219 Identities=14% Similarity=0.107 Sum_probs=159.2
Q ss_pred ccCccCeEEEEECCCCCEEEEe-cCC---eEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEE-EEecC
Q 010256 230 HAHDYHINSISNNSDGETFISA-DDL---RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSK 304 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~~~l~s~-~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~-~~~~d 304 (514)
.+|...+.+++|+|+|+.|+++ .++ .|++||+++++.. .+..+...+.+++|+|+| +.|+ +++.+
T Consensus 175 ~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~---------~l~~~~~~~~~~~~spdg-~~la~~~~~~ 244 (415)
T 2hqs_A 175 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR---------QVASFPRHNGAPAFSPDG-SKLAFALSKT 244 (415)
T ss_dssp EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE---------EEECCSSCEEEEEECTTS-SEEEEEECTT
T ss_pred eCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE---------EeecCCCcccCEEEcCCC-CEEEEEEecC
Confidence 4566789999999999999988 654 9999999866542 234467789999999999 6666 66666
Q ss_pred Ce--EEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC--C--eEEEEEccCCCCceee
Q 010256 305 GS--IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--M--TLKLWDINMDSGPVAT 378 (514)
Q Consensus 305 g~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~--~i~iwd~~~~~~~~~~ 378 (514)
+. |++||+.+++.. . +..|...+.+++|+|||++|+.+++ + .|.+||+.. ++ ...
T Consensus 245 g~~~i~~~d~~~~~~~-----~------------l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~-~~-~~~ 305 (415)
T 2hqs_A 245 GSLNLYVMDLASGQIR-----Q------------VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING-GA-PQR 305 (415)
T ss_dssp SSCEEEEEETTTCCEE-----E------------CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-SC-CEE
T ss_pred CCceEEEEECCCCCEE-----e------------CcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC-CC-EEE
Confidence 54 999999876531 1 2334467999999999999887653 4 677788875 43 333
Q ss_pred eeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCC---CcEEEEecCCCceeeeeecCCCcceeEEEECCCCCc
Q 010256 379 FQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS---NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPS 455 (514)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 455 (514)
+..+... +.+++|+|||++|++++.+ ..|++||+.+++. ..+..+. .+..+.|+|++++
T Consensus 306 l~~~~~~---------------~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~--~~l~~~~-~~~~~~~spdg~~ 367 (415)
T 2hqs_A 306 ITWEGSQ---------------NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTF-LDETPSLAPNGTM 367 (415)
T ss_dssp CCCSSSE---------------EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSS-SCEEEEECTTSSE
T ss_pred EecCCCc---------------ccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE--EEecCCC-CcCCeEEcCCCCE
Confidence 3333222 3379999999999988764 5899999998754 3455554 8899999999999
Q ss_pred eeecCCCC---eEEEeeCCCCCccccCCcccccccceEEEEEcCCCC
Q 010256 456 RPLGSLSG---VVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSEN 499 (514)
Q Consensus 456 l~s~s~d~---~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~ 499 (514)
|++++.++ .+.+++-.... ......+.+.|.+++|+|...
T Consensus 368 l~~~s~~~~~~~l~~~d~~g~~----~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 368 VIYSSSQGMGSVLNLVSTDGRF----KARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp EEEEEEETTEEEEEEEETTSCC----EEECCCSSSEEEEEEECCCCC
T ss_pred EEEEEcCCCccEEEEEECCCCc----EEEeeCCCCCCcCCccccccc
Confidence 99998877 56663321111 112234788999999999754
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-25 Score=213.01 Aligned_cols=317 Identities=9% Similarity=0.073 Sum_probs=214.6
Q ss_pred cccccceEEEEEcCCCCeE-EEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 32 VQEVDIISAIEFDKSGDHL-ATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l-~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
+.+...+.+++|+|+|++| ++++.|+.|++||+.+++. ...+..+
T Consensus 28 ~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-----------------------~~~~~~~----------- 73 (391)
T 1l0q_A 28 IPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-----------------------IATVPAG----------- 73 (391)
T ss_dssp EECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-----------------------EEEEECS-----------
T ss_pred eecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeE-----------------------EEEEECC-----------
Confidence 3444569999999999976 6777999999999887663 2333333
Q ss_pred cccceeEEEEeeCCCCcEEEE-eeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 111 IEEKINKIRWCQSANSALYLL-STNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s-~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
..+.+++| +++++++++ ++.++.|++||+.+++.......+. .+. .++|+|+++.+
T Consensus 74 --~~v~~~~~--spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~---------~~~-------~~~~s~dg~~l--- 130 (391)
T 1l0q_A 74 --SSPQGVAV--SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK---------SPL-------GLALSPDGKKL--- 130 (391)
T ss_dssp --SSEEEEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS---------SEE-------EEEECTTSSEE---
T ss_pred --CCccceEE--CCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC---------Ccc-------eEEECCCCCEE---
Confidence 46999999 567777765 4567999999999998766655431 222 78999999865
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEE-EEe-cCCeEEEEeccCCCce
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF-ISA-DDLRINLWNLEISNQS 267 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~-~d~~i~iwd~~~~~~~ 267 (514)
+++++.++.|++|| +... +....+ ..+ ..+.+++|+|+++.+ +++ .++.|++||+++.+..
T Consensus 131 --------~~~~~~~~~v~~~d-~~~~------~~~~~~-~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~ 193 (391)
T 1l0q_A 131 --------YVTNNGDKTVSVIN-TVTK------AVINTV-SVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI 193 (391)
T ss_dssp --------EEEETTTTEEEEEE-TTTT------EEEEEE-ECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred --------EEEeCCCCEEEEEE-CCCC------cEEEEE-ecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEE
Confidence 15677899999999 3322 122222 223 457899999999887 566 7999999999865433
Q ss_pred eeeeccCCCcccccCCceEEEEEecCCCcEEEEEe---cCCeEEEEEcCCCccccccccceeccCCCCccceeeccccce
Q 010256 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS---SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~---~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 344 (514)
.. ..+...+.+++|+|++ .++++++ .++.|++||+++++.. ..+..+ ..+
T Consensus 194 ~~---------~~~~~~~~~~~~~~~g-~~l~~~~~~~~~~~v~~~d~~~~~~~----~~~~~~-------------~~~ 246 (391)
T 1l0q_A 194 DT---------VKVEAAPSGIAVNPEG-TKAYVTNVDKYFNTVSMIDTGTNKIT----ARIPVG-------------PDP 246 (391)
T ss_dssp EE---------EECSSEEEEEEECTTS-SEEEEEEECSSCCEEEEEETTTTEEE----EEEECC-------------SSE
T ss_pred EE---------EecCCCccceEECCCC-CEEEEEecCcCCCcEEEEECCCCeEE----EEEecC-------------CCc
Confidence 21 1245678999999999 7777777 6899999999887652 233222 357
Q ss_pred eEEEEecCCCEEE-EEe-CCeEEEEEccCCCCceeeeeecccccccc--ccccccCCccceeeEEEcCCC----------
Q 010256 345 SDIKFARNGRHIL-SRD-YMTLKLWDINMDSGPVATFQVHEHLRPKL--CDLYENDSIFDKFECCLSGDG---------- 410 (514)
Q Consensus 345 ~~~~~s~~g~~l~-~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~~~---------- 410 (514)
.+++|+|+|++++ +++ ++.|++||+.+ ++.+..+..+....... ........... ...|+.+.
T Consensus 247 ~~~~~s~dg~~l~~s~~~d~~v~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~a~fs~~~~~~~~~~~~~ 323 (391)
T 1l0q_A 247 AGIAVTPDGKKVYVALSFXNTVSVIDTAT-NTITATMAVGKNPYASGQFIGSIPVQPVYP--SADFKSNITSGYIFLSEP 323 (391)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEECSSSEECCSSCEEECSSCCCCC--BCCEEESCCSSEEETTCC
T ss_pred cEEEEccCCCEEEEEcCCCCEEEEEECCC-CcEEEEEECCcCCCccceeeeccccccccc--ccccccccccccccccce
Confidence 8899999999885 554 49999999997 77777777665432100 00000011111 11222221
Q ss_pred CEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeec
Q 010256 411 GRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG 459 (514)
Q Consensus 411 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 459 (514)
..+...+.|...++|++..+... .+..+ ...|+++|.|.++.
T Consensus 324 ~~~~~~~~~~~~~~W~~~~g~~~-----~~~~~--~~~~~~~g~y~~~~ 365 (391)
T 1l0q_A 324 VQFTDLSKDATEWKWDFGDGSSS-----KKQNP--THTYSETGIYTVRL 365 (391)
T ss_dssp EEEEECCBSCSEEEEECSSSCEE-----CSSSC--EECCSSCEEEEEEE
T ss_pred EEEEeCCCCceEEEEECCCCccc-----CcCCC--eEEeCCCceEEEEE
Confidence 33556677889999999876431 22222 45788888876544
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-26 Score=243.53 Aligned_cols=374 Identities=9% Similarity=0.014 Sum_probs=244.1
Q ss_pred ccccccceEEEEEcCCCCeEEEecCC------CeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRG------GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFD 104 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 104 (514)
...|...|.+++|||||++||+++.+ ..|++|++.+++. ..+..|.
T Consensus 48 lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~------------------------~~lt~~~---- 99 (1045)
T 1k32_A 48 IVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI------------------------KRITYFS---- 99 (1045)
T ss_dssp EECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE------------------------EECCCCC----
T ss_pred eeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCe------------------------EEcccCC----
Confidence 34688999999999999999988643 3799999876542 3445555
Q ss_pred cccccccccce-------eEEEEeeCCCCcEEEEeeCC------CeEEEEEcCccEEEEEeeccCCCcc----cc-----
Q 010256 105 YLKSLEIEEKI-------NKIRWCQSANSALYLLSTND------KTIKLWKVQEKKVKKVFDWNVHPEK----AA----- 162 (514)
Q Consensus 105 ~~~~~~~~~~v-------~~i~~~~~~~~~~l~s~~~d------~~i~iw~~~~~~~~~~~~~~~~~~~----~~----- 162 (514)
..+ ..++| +++|+++++++.+ ..|.+|++.+++...+......... .+
T Consensus 100 --------~~~~~~~~~~~~~~~--SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~ 169 (1045)
T 1k32_A 100 --------GKSTGRRMFTDVAGF--DPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRN 169 (1045)
T ss_dssp --------EEEETTEECSEEEEE--CTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEES
T ss_pred --------CcccccccccccccC--CCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEecc
Confidence 445 89999 5677777777644 4688888888775543322110000 00
Q ss_pred -------------CCcceec------------ccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeecccc
Q 010256 163 -------------GNGPIFG------------SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQE 217 (514)
Q Consensus 163 -------------~~~~v~~------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~ 217 (514)
....++. -......+.|+++ . ++++++.++.+++|. +....
T Consensus 170 ~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~------------l~~~~~~dg~~~l~~-~~~~g 235 (1045)
T 1k32_A 170 TFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-R------------IYFITDIDGFGQIYS-TDLDG 235 (1045)
T ss_dssp CSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-E------------EEEEECTTSSCEEEE-EETTS
T ss_pred CCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-E------------EEEEEeccCceEEEE-EeCCC
Confidence 0000000 0000012233333 2 235667788889888 22111
Q ss_pred ccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccC---CCcccccCCceEEEEEe-cC
Q 010256 218 TNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVK---PANMEDLTEVITSAEFH-PT 293 (514)
Q Consensus 218 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~i~~v~~~-p~ 293 (514)
. ..+. +..|. .+...+|+|+|+.|+.+.++.|++|++. ......+..-. ......|...+.+++|+ |+
T Consensus 236 ~-----~~~~-l~~~~-~~~~~~~SpDG~~la~~~~~~i~~~d~~-~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pd 307 (1045)
T 1k32_A 236 K-----DLRK-HTSFT-DYYPRHLNTDGRRILFSKGGSIYIFNPD-TEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLD 307 (1045)
T ss_dssp C-----SCEE-CCCCC-SSCEEEEEESSSCEEEEETTEEEEECTT-TCCEEECCCCCCCBCCSEEEECGGGGEEEEEECG
T ss_pred C-----cceE-ecCCC-CcceeeEcCCCCEEEEEeCCEEEEecCC-ceEeeeeccCcccccccccccccccceeeecCCC
Confidence 0 1111 13333 4567799999999999888999999984 33222110000 00111234568899999 99
Q ss_pred CCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecccc-ceeEEEEecCCCEEEEEeC-CeEE-EEEcc
Q 010256 294 HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA-SISDIKFARNGRHILSRDY-MTLK-LWDIN 370 (514)
Q Consensus 294 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s~~g~~l~~~~~-~~i~-iwd~~ 370 (514)
| +.|++++ ++.+.+|++..+... . +..|.. .+..++|+ +|+.|+.+++ ..+. +||+.
T Consensus 308 G-~~la~~~-~~~i~~~~~~~~~~~-----~------------~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~ 367 (1045)
T 1k32_A 308 G-DLIAFVS-RGQAFIQDVSGTYVL-----K------------VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYR 367 (1045)
T ss_dssp G-GCEEEEE-TTEEEEECTTSSBEE-----E------------CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETT
T ss_pred C-CEEEEEE-cCEEEEEcCCCCceE-----E------------ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECC
Confidence 9 7788777 889999998876531 1 122334 68999999 9999998766 7777 88987
Q ss_pred CCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEEC
Q 010256 371 MDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQT 450 (514)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 450 (514)
. ++ ...+..+... +..++|+|||++|++++.++.|++||+.+++. ...+.+|...+..++|+
T Consensus 368 ~-~~-~~~l~~~~~~---------------~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~-~~~~~~~~~~v~~~~~S 429 (1045)
T 1k32_A 368 T-GK-AEKFEENLGN---------------VFAMGVDRNGKFAVVANDRFEIMTVDLETGKP-TVIERSREAMITDFTIS 429 (1045)
T ss_dssp T-CC-EEECCCCCCS---------------EEEEEECTTSSEEEEEETTSEEEEEETTTCCE-EEEEECSSSCCCCEEEC
T ss_pred C-CC-ceEecCCccc---------------eeeeEECCCCCEEEEECCCCeEEEEECCCCce-EEeccCCCCCccceEEC
Confidence 5 43 3333333222 34899999999999999999999999998743 35666898999999999
Q ss_pred CCCCceeecCCCC----------eEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEec
Q 010256 451 PSRPSRPLGSLSG----------VVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS 506 (514)
Q Consensus 451 ~~~~~l~s~s~d~----------~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~ 506 (514)
||+++|++++.++ .|++++...- . ......+...+..++|+|||++|++++.
T Consensus 430 pDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g---~-~~~l~~~~~~~~~~~~spdG~~l~~~s~ 491 (1045)
T 1k32_A 430 DNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR---K-IFAATTENSHDYAPAFDADSKNLYYLSY 491 (1045)
T ss_dssp TTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT---E-EEECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred CCCCeEEEEecCccccccCCCCCeEEEEECCCC---c-EEEeeCCCcccCCceEcCCCCEEEEEec
Confidence 9999999887654 7888432211 1 1122346677889999999999998774
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.2e-26 Score=232.52 Aligned_cols=335 Identities=8% Similarity=0.058 Sum_probs=213.7
Q ss_pred ccceEEEEEcCCCCeEEEecC-CC-----eEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccc
Q 010256 35 VDIISAIEFDKSGDHLATGDR-GG-----RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~-dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (514)
...|++++|||||++|++++. |+ .|++||+.+++.. ..+..... .|....+.. . +........
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~----~~~~~~~~----~~~~~~~~~-~--~~~~~~~~~ 104 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTR----LLVDSKVV----LPGTETLSD-E--EKARRERQR 104 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEE----EEECGGGT----C---------------------
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCcee----Eccchhhc----ccccccccc-h--hhhhhhhhh
Confidence 457999999999999999998 88 8999999877632 00000000 000000000 0 000000000
Q ss_pred cccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCcc---EEEEEeeccCCCccccCCcceecccccCCceeeccCCCc
Q 010256 109 LEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEK---KVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (514)
Q Consensus 109 ~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 185 (514)
......|.+++| ++||++|++++. +.|++||+.++ +..
T Consensus 105 ~~~~~~v~~~~~--SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~------------------------------------ 145 (741)
T 2ecf_A 105 IAAMTGIVDYQW--SPDAQRLLFPLG-GELYLYDLKQEGKAAVR------------------------------------ 145 (741)
T ss_dssp --CCEESCCCEE--CTTSSEEEEEET-TEEEEEESSSCSTTSCC------------------------------------
T ss_pred hccccCcceeEE--CCCCCEEEEEeC-CcEEEEECCCCCcceEE------------------------------------
Confidence 000023677788 567778877775 78888887654 210
Q ss_pred cccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCC
Q 010256 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISN 265 (514)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~ 265 (514)
. +..|...+..++|+|||++|+.+.++.|++||+.+++
T Consensus 146 -----------------------------------------~-l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~ 183 (741)
T 2ecf_A 146 -----------------------------------------Q-LTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGR 183 (741)
T ss_dssp -----------------------------------------B-CCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTE
T ss_pred -----------------------------------------E-cccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCC
Confidence 0 1345567899999999999999977799999998644
Q ss_pred ceeeeeccCCCcccccCC----------------ceEEEEEecCCCcEEEEEecCC------------------------
Q 010256 266 QSFNIVDVKPANMEDLTE----------------VITSAEFHPTHCNMLAYSSSKG------------------------ 305 (514)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~----------------~i~~v~~~p~~~~~l~~~~~dg------------------------ 305 (514)
.. .+. ..+.. .+.+++|+||| +.|++++.|+
T Consensus 184 ~~-~~~-------~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~ 254 (741)
T 2ecf_A 184 QM-QLT-------ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYP 254 (741)
T ss_dssp EE-ECC-------CCCCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECC
T ss_pred EE-Eec-------cCCccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceEeecC
Confidence 32 221 11111 24789999999 7888887665
Q ss_pred ---------eEEEEEcCC-CccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe------CCeEEEEEc
Q 010256 306 ---------SIRLIDMRQ-SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD------YMTLKLWDI 369 (514)
Q Consensus 306 ---------~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~------~~~i~iwd~ 369 (514)
.|.+||+.+ ++.. . +... ..|...+..++| |||++|+.+. +..|++||+
T Consensus 255 ~~g~~~~~~~l~~~d~~~~~~~~----~-~~~~---------~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~ 319 (741)
T 2ecf_A 255 AAGDANVQVKLGVISPAEQAQTQ----W-IDLG---------KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTL 319 (741)
T ss_dssp BTTSCCCEEEEEEECSSTTCCCE----E-ECCC---------SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEET
T ss_pred CCCCCCCeeEEEEEECCCCCceE----E-ecCC---------CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEEC
Confidence 788888877 6532 1 1100 124467999999 9999998642 268999999
Q ss_pred cCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEE-E
Q 010256 370 NMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQ-V 448 (514)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~-~ 448 (514)
.+ ++....+..+.... +..+..++|+|||+++++++.||.++||.+..... ...+..+...+..+ .
T Consensus 320 ~~-g~~~~~~~~~~~~~-----------~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~ 386 (741)
T 2ecf_A 320 AS-NQQRVLAHETSPTW-----------VPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLA 386 (741)
T ss_dssp TT-CCEEEEEEEECSSC-----------CCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEE
T ss_pred CC-CceEEEEEcCCCCc-----------CCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeE
Confidence 87 66666555443210 00022789999999999999999888887653223 56777787888887 5
Q ss_pred ECCCCCcee-ecCCCC--eEEE--ee--CCCCCccccCCcccccccceEEEEEcCCCCEEEEEe
Q 010256 449 QTPSRPSRP-LGSLSG--VVRR--VK--GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 505 (514)
Q Consensus 449 ~~~~~~~l~-s~s~d~--~v~i--~~--~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~ 505 (514)
|+|+++.|+ +++.++ .+++ .+ +..+. .+.....+..++||||+++|+...
T Consensus 387 ~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~-------~l~~~~~~~~~~~spdg~~l~~~~ 443 (741)
T 2ecf_A 387 VDEKAGLAYFRAGIESARESQIYAVPLQGGQPQ-------RLSKAPGMHSASFARNASVYVDSW 443 (741)
T ss_dssp EETTTTEEEEEECSSCTTCBEEEEEETTCCCCE-------ECCCSCSEEEEEECTTSSEEEEEE
T ss_pred EeCCCCEEEEEEeCCCCceEEEEEEEcCCCCee-------ecccCCCceEEEECCCCCEEEEEe
Confidence 999998765 455555 6777 22 21111 112256788999999999998654
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-25 Score=234.93 Aligned_cols=365 Identities=10% Similarity=0.036 Sum_probs=245.9
Q ss_pred cccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccc
Q 010256 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (514)
.+|...+.+++|+++ .++++++.||.+.||.+..... ....+..|
T Consensus 200 ~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~----------------------~~~~l~~~------------ 244 (1045)
T 1k32_A 200 VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGK----------------------DLRKHTSF------------ 244 (1045)
T ss_dssp ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSC----------------------SCEECCCC------------
T ss_pred cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCC----------------------cceEecCC------------
Confidence 468899999999998 6777888889999998764221 11223333
Q ss_pred ccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeec-cCCCcccccc
Q 010256 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYM-ANGGCGERNF 190 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~l~~~~ 190 (514)
..+..++|+ ++|++++.+ .++.|.+|++...++. .......... ............++|+ |||+.+
T Consensus 245 -~~~~~~~~S--pDG~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~~~~----~~~~~~~~~v~~~~~S~pdG~~l---- 311 (1045)
T 1k32_A 245 -TDYYPRHLN--TDGRRILFS-KGGSIYIFNPDTEKIE-KIEIGDLESP----EDRIISIPSKFAEDFSPLDGDLI---- 311 (1045)
T ss_dssp -CSSCEEEEE--ESSSCEEEE-ETTEEEEECTTTCCEE-ECCCCCCCBC----CSEEEECGGGGEEEEEECGGGCE----
T ss_pred -CCcceeeEc--CCCCEEEEE-eCCEEEEecCCceEee-eeccCccccc----ccccccccccceeeecCCCCCEE----
Confidence 235667885 567778777 4899999999655443 2111100000 0000000112378999 999987
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCcc-CeEEEEECCCCCEEEEe-cCCeEE-EEeccCCCce
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDY-HINSISNNSDGETFISA-DDLRIN-LWNLEISNQS 267 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~-~d~~i~-iwd~~~~~~~ 267 (514)
+.+. ++.+.+|+ ..... .. . +..|.. .+..++|+ +|+.|+++ .+..+. +|++..+..
T Consensus 312 --------a~~~-~~~i~~~~-~~~~~------~~-~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~- 371 (1045)
T 1k32_A 312 --------AFVS-RGQAFIQD-VSGTY------VL-K-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA- 371 (1045)
T ss_dssp --------EEEE-TTEEEEEC-TTSSB------EE-E-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE-
T ss_pred --------EEEE-cCEEEEEc-CCCCc------eE-E-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCc-
Confidence 5544 77888887 33221 11 1 245666 88999999 99999988 777888 889875432
Q ss_pred eeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEE
Q 010256 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 347 (514)
. .+..+...+..++|+|+| +.|++++.++.|++||+.+++.. .. ..+|...+.++
T Consensus 372 ~--------~l~~~~~~~~~~~~SpDG-~~la~~~~~~~v~~~d~~tg~~~----~~------------~~~~~~~v~~~ 426 (1045)
T 1k32_A 372 E--------KFEENLGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKPT----VI------------ERSREAMITDF 426 (1045)
T ss_dssp E--------ECCCCCCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEE----EE------------EECSSSCCCCE
T ss_pred e--------EecCCccceeeeEECCCC-CEEEEECCCCeEEEEECCCCceE----Ee------------ccCCCCCccce
Confidence 2 233567889999999999 89999999999999999887642 11 22455778999
Q ss_pred EEecCCCEEEEEeC-----------CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEE
Q 010256 348 KFARNGRHILSRDY-----------MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 416 (514)
Q Consensus 348 ~~s~~g~~l~~~~~-----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 416 (514)
+|||||++|++++. +.|++||+.. ++ +..+..+... +..++|+|||++|+++
T Consensus 427 ~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~-g~-~~~l~~~~~~---------------~~~~~~spdG~~l~~~ 489 (1045)
T 1k32_A 427 TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG-RK-IFAATTENSH---------------DYAPAFDADSKNLYYL 489 (1045)
T ss_dssp EECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT-TE-EEECSCSSSB---------------EEEEEECTTSCEEEEE
T ss_pred EECCCCCeEEEEecCccccccCCCCCeEEEEECCC-Cc-EEEeeCCCcc---------------cCCceEcCCCCEEEEE
Confidence 99999999987532 4899999986 44 4555444332 2378999999999999
Q ss_pred eCCCcEEEEecCCCc------------------------------------------eeeeeecCCCcceeEEEECCCCC
Q 010256 417 SYSNLFRVFGCSEGS------------------------------------------AESTTLEASKNPMRRQVQTPSRP 454 (514)
Q Consensus 417 ~~dg~i~iwd~~~~~------------------------------------------~~~~~~~~~~~~v~~~~~~~~~~ 454 (514)
+.++...+|+..... .....+..|...+..+.++|+++
T Consensus 490 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~ 569 (1045)
T 1k32_A 490 SYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSI 569 (1045)
T ss_dssp ESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEE
T ss_pred ecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCe
Confidence 987777666542211 01123345667788999999998
Q ss_pred ceee-----------cCCCC--eEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecCcEEEEe
Q 010256 455 SRPL-----------GSLSG--VVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 455 ~l~s-----------~s~d~--~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~i~~ 513 (514)
++++ .+.++ .+.+++..... .. .....+..++|||||+.|++++.+++.+|.
T Consensus 570 ~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~---~~----~l~~~v~~~~~S~DG~~l~~~~~~~i~~~d 634 (1045)
T 1k32_A 570 LIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK---VT----EVKNNLTDLRLSADRKTVMVRKDDGKIYTF 634 (1045)
T ss_dssp EEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC---EE----EEEEEEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred EEEEecccCcccccccccCCCceEEEEECCCCc---EE----EeecCcceEEECCCCCEEEEEcCCcEEEEe
Confidence 7775 23333 44443322111 00 112668899999999999999988999986
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.94 E-value=6.1e-25 Score=225.06 Aligned_cols=334 Identities=11% Similarity=0.027 Sum_probs=208.2
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccce
Q 010256 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (514)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (514)
..+.+++|+|||+++++ +.||.|++||+.+++.. ..+.+|... ...|
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~-----------------------~~~~~~~~~---------~~~v 63 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTST-----------------------VLIEGKKIE---------SLRA 63 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCE-----------------------EEECTTTTT---------TTTC
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEE-----------------------EEecccccc---------cccc
Confidence 34778999999998876 68999999999887632 234444300 0148
Q ss_pred eEEEEeeCCCCcEEEEeeCC---------CeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcc
Q 010256 116 NKIRWCQSANSALYLLSTND---------KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (514)
Q Consensus 116 ~~i~~~~~~~~~~l~s~~~d---------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 186 (514)
.+++| ++||++|++++.+ +.+.+||+.+++...+..
T Consensus 64 ~~~~~--SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~--------------------------------- 108 (723)
T 1xfd_A 64 IRYEI--SPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDP--------------------------------- 108 (723)
T ss_dssp SEEEE--CTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCC---------------------------------
T ss_pred ceEEE--CCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccC---------------------------------
Confidence 99999 6788899998764 677788887765311100
Q ss_pred ccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCc
Q 010256 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQ 266 (514)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~ 266 (514)
..+|...+..++|+|||+.|+.+.++.|++||+.+++.
T Consensus 109 ------------------------------------------~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~ 146 (723)
T 1xfd_A 109 ------------------------------------------PEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQA 146 (723)
T ss_dssp ------------------------------------------TTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCC
T ss_pred ------------------------------------------CccccccccccEECCCCCEEEEEECCeEEEEECCCCce
Confidence 12344457788999999999999668999999986543
Q ss_pred eeeeeccCCCc--cccc---------CCceEEEEEecCCCcEEEEEecCC------------------------------
Q 010256 267 SFNIVDVKPAN--MEDL---------TEVITSAEFHPTHCNMLAYSSSKG------------------------------ 305 (514)
Q Consensus 267 ~~~~~~~~~~~--~~~~---------~~~i~~v~~~p~~~~~l~~~~~dg------------------------------ 305 (514)
. .+....... +.++ ...+.+++|+||| +.|++++.++
T Consensus 147 ~-~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 224 (723)
T 1xfd_A 147 I-RVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSE 224 (723)
T ss_dssp E-EEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSC
T ss_pred E-EEecCCCCCceECcccceeEEEEeccCcceEEECCCC-CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCC
Confidence 2 221100000 0001 1133789999999 7888877543
Q ss_pred ----eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe----C-CeEEEEEccCCCCce
Q 010256 306 ----SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----Y-MTLKLWDINMDSGPV 376 (514)
Q Consensus 306 ----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~----~-~~i~iwd~~~~~~~~ 376 (514)
.|++||+.+++.. ..+..+. .+..+...+..++|||||+++++.. . ..|++||+.+ ++..
T Consensus 225 ~~~~~l~~~d~~~~~~~----~~l~~~~------~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~-g~~~ 293 (723)
T 1xfd_A 225 NPSISLHVIGLNGPTHD----LEMMPPD------DPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT-GVCT 293 (723)
T ss_dssp CCEEEEEEEESSSSCCC----EECCCCC------CGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT-CCEE
T ss_pred CCeeEEEEEECCCCcee----EEeeCCc------cCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC-Ccce
Confidence 6888888776531 1121110 0112346789999999999887642 2 6899999986 6655
Q ss_pred eeeeecc-ccccccccccccCCccceeeEEEcCCCCEEEE--EeCCC------cEEEEe-cCCCce-eeeeecCCCccee
Q 010256 377 ATFQVHE-HLRPKLCDLYENDSIFDKFECCLSGDGGRVAT--GSYSN------LFRVFG-CSEGSA-ESTTLEASKNPMR 445 (514)
Q Consensus 377 ~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s--~~~dg------~i~iwd-~~~~~~-~~~~~~~~~~~v~ 445 (514)
..+..+. ..... . ...++|+|||+.|+. +..++ .|++|| ...+.. ....+..+...+.
T Consensus 294 ~~~~~~~~~~~~~---------~--~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~ 362 (723)
T 1xfd_A 294 KKHEDESEAWLHR---------Q--NEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVT 362 (723)
T ss_dssp EEEEEECSSCCCC---------C--CCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEE
T ss_pred EEEEeccCCEEec---------c--CCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEE
Confidence 5544332 11100 0 016899999997774 45666 577777 343320 0233443333344
Q ss_pred -EEEECCCCCceeecCCC---CeEEE--ee--CCCCCccccCCcccccccceEEEEEcCCCCEEEEEe
Q 010256 446 -RQVQTPSRPSRPLGSLS---GVVRR--VK--GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 505 (514)
Q Consensus 446 -~~~~~~~~~~l~s~s~d---~~v~i--~~--~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~ 505 (514)
.+.|+|+++.|+..+.+ +.+++ ++ +.... ..+.. .+.+...+..++|+|||++|+...
T Consensus 363 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~l~~-~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 363 KILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNR-QCLSC-DLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp EEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCC-BCSST-TSSSSCCCCEEEECTTSSEEEEEC
T ss_pred eeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCc-ceecc-cccCCCCeEEEEECCCCCEEEEEc
Confidence 46899999998766544 66777 22 11011 01110 011456789999999999998654
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.1e-23 Score=200.54 Aligned_cols=293 Identities=11% Similarity=0.091 Sum_probs=206.9
Q ss_pred eEEEEEcCCCCeEEEecCCCeEEEEEe--cCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccce
Q 010256 38 ISAIEFDKSGDHLATGDRGGRVVLFER--TDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (514)
Q Consensus 38 V~~~~~s~~g~~l~tg~~dg~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (514)
+.+++|+|||++|++++.|+.|++||+ .+++ ...++..+ ..+
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~-----------------------~~~~i~~g-------------~~p 224 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT-----------------------KVAEIKIG-------------IEA 224 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE-----------------------EEEEEECC-------------SEE
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCc-----------------------EEEEEecC-------------CCc
Confidence 889999999999999999999999998 5444 22334322 557
Q ss_pred eEEEEeeCC----CCcEEEEee-CCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 116 NKIRWCQSA----NSALYLLST-NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 116 ~~i~~~~~~----~~~~l~s~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..++| ++ +|+++++++ .+++|.+||..++++.......... .++
T Consensus 225 ~~va~--sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~----------------------~~~------- 273 (543)
T 1nir_A 225 RSVES--SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT----------------------VDT------- 273 (543)
T ss_dssp EEEEE--CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEEC----------------------SSS-------
T ss_pred ceEEe--CCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcc----------------------cCc-------
Confidence 89999 56 788999887 5899999999988766554432000 000
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccC-ccCeEEEEECCCCCEEEE-e-cCCeEEEEeccCCCce
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAH-DYHINSISNNSDGETFIS-A-DDLRINLWNLEISNQS 267 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~ 267 (514)
...| ...+.++.++|++..++. . .+++|.+||..+.+..
T Consensus 274 --------------------------------------~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l 315 (543)
T 1nir_A 274 --------------------------------------QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNL 315 (543)
T ss_dssp --------------------------------------CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSC
T ss_pred --------------------------------------cccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcc
Confidence 0012 236889999998776555 4 7999999999865433
Q ss_pred eeeeccCCCcccccCCceEEEEEecCCCcEEE-EEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeE
Q 010256 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLA-YSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 346 (514)
. +. .+ .+...+..+.|+|++ ++|+ ++..+++|.+||+.++++. ..++.... .|.+....
T Consensus 316 ~-~~-----~i-~~~~~~~~~~~spdg-~~l~va~~~~~~v~v~D~~tg~l~----~~i~~g~~--------ph~g~g~~ 375 (543)
T 1nir_A 316 T-VT-----SI-GAAPFLHDGGWDSSH-RYFMTAANNSNKVAVIDSKDRRLS----ALVDVGKT--------PHPGRGAN 375 (543)
T ss_dssp E-EE-----EE-ECCSSCCCEEECTTS-CEEEEEEGGGTEEEEEETTTTEEE----EEEECSSS--------BCCTTCEE
T ss_pred e-eE-----Ee-ccCcCccCceECCCC-CEEEEEecCCCeEEEEECCCCeEE----EeeccCCC--------CCCCCCcc
Confidence 2 10 11 245567889999999 6554 5556899999999998763 33332211 12222323
Q ss_pred EEEecC-CCEEEEEe--CCeEEEEEccCC------CCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe
Q 010256 347 IKFARN-GRHILSRD--YMTLKLWDINMD------SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 417 (514)
Q Consensus 347 ~~~s~~-g~~l~~~~--~~~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 417 (514)
+ ++|+ +.+++++. +++|.+||+.+. .+.++++..|.... ..++++|||++|++++
T Consensus 376 ~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~---------------~~v~~~pdg~~l~v~~ 439 (543)
T 1nir_A 376 F-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGS---------------LFIKTHPKSSHLYVDT 439 (543)
T ss_dssp E-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCC---------------CCEECCTTCCEEEECC
T ss_pred c-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCc---------------eEEEcCCCCCcEEEec
Confidence 3 4777 66667764 599999999852 56778887775432 2799999999999987
Q ss_pred -------CCCcEEEEecCCCceeeeee--------cCCCcceeEEEECCCCCceeec-----CCCCeEEEeeCC
Q 010256 418 -------YSNLFRVFGCSEGSAESTTL--------EASKNPMRRQVQTPSRPSRPLG-----SLSGVVRRVKGA 471 (514)
Q Consensus 418 -------~dg~i~iwd~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~s~-----s~d~~v~i~~~~ 471 (514)
.+++|.+||+.+++.....+ ..+...+..+.|+|+|+++.++ +.|+.|.+++..
T Consensus 440 ~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~ 513 (543)
T 1nir_A 440 TFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDK 513 (543)
T ss_dssp TTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETT
T ss_pred CCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECC
Confidence 37899999999886553443 4567889999999999998865 347999995443
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.93 E-value=6.2e-23 Score=194.60 Aligned_cols=261 Identities=12% Similarity=0.111 Sum_probs=191.4
Q ss_pred ccccccceEEEEEcC--------------CCCeEEEecCC------CeEEEEEecCCcccCCcccccccccccccCCccc
Q 010256 31 EVQEVDIISAIEFDK--------------SGDHLATGDRG------GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF 90 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~--------------~g~~l~tg~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (514)
...|...+..+++++ .+..++.++.+ +.|++||+.+...
T Consensus 113 ~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~--------------------- 171 (415)
T 2hqs_A 113 YKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ--------------------- 171 (415)
T ss_dssp EEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSC---------------------
T ss_pred EEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCC---------------------
Confidence 446777777777764 25677766654 7999999864332
Q ss_pred eeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCC---eEEEEEcCccEEEEEeeccCCCccccCCcce
Q 010256 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDK---TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPI 167 (514)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v 167 (514)
..+.+|. ..|.+++| +++|++|++++.++ .|++||+.+++...+
T Consensus 172 ---~~l~~~~------------~~v~~~~~--Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l---------------- 218 (415)
T 2hqs_A 172 ---FVVHRSP------------QPLMSPAW--SPDGSKLAYVTFESGRSALVIQTLANGAVRQV---------------- 218 (415)
T ss_dssp ---EEEEEES------------SCEEEEEE--CTTSSEEEEEECTTSSCEEEEEETTTCCEEEE----------------
T ss_pred ---EEEeCCC------------CcceeeEE--cCCCCEEEEEEecCCCcEEEEEECCCCcEEEe----------------
Confidence 3455666 77999999 67888999998875 999999988754221
Q ss_pred ecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCE
Q 010256 168 FGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET 247 (514)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 247 (514)
..|...+.+++|+|||+.
T Consensus 219 --------------------------------------------------------------~~~~~~~~~~~~spdg~~ 236 (415)
T 2hqs_A 219 --------------------------------------------------------------ASFPRHNGAPAFSPDGSK 236 (415)
T ss_dssp --------------------------------------------------------------ECCSSCEEEEEECTTSSE
T ss_pred --------------------------------------------------------------ecCCCcccCEEEcCCCCE
Confidence 234456889999999998
Q ss_pred EE-Ee-cCC--eEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEec-CC--eEEEEEcCCCccccc
Q 010256 248 FI-SA-DDL--RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KG--SIRLIDMRQSALCDT 320 (514)
Q Consensus 248 l~-s~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~-dg--~i~~wd~~~~~~~~~ 320 (514)
|+ ++ .++ .|++||+++++. . .+..|...+.+++|+|+| +.|++++. ++ .|.+||+.+++..
T Consensus 237 la~~~~~~g~~~i~~~d~~~~~~-~--------~l~~~~~~~~~~~~spdg-~~l~~~s~~~g~~~i~~~d~~~~~~~-- 304 (415)
T 2hqs_A 237 LAFALSKTGSLNLYVMDLASGQI-R--------QVTDGRSNNTEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGGAPQ-- 304 (415)
T ss_dssp EEEEECTTSSCEEEEEETTTCCE-E--------ECCCCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCCE--
T ss_pred EEEEEecCCCceEEEEECCCCCE-E--------eCcCCCCcccceEECCCC-CEEEEEECCCCCcEEEEEECCCCCEE--
Confidence 88 55 444 599999986543 2 345677889999999999 77777775 45 6777788776531
Q ss_pred cccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-C---CeEEEEEccCCCCceeeeeeccccccccccccccC
Q 010256 321 HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y---MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYEND 396 (514)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (514)
. +..+...+.+++|+|+|++|++++ + ..|.+||+.+ ++. ..+..+. .
T Consensus 305 ---~------------l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~-~~~-~~l~~~~-~----------- 355 (415)
T 2hqs_A 305 ---R------------ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT-GGV-QVLSSTF-L----------- 355 (415)
T ss_dssp ---E------------CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT-CCE-EECCCSS-S-----------
T ss_pred ---E------------EecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC-CCE-EEecCCC-C-----------
Confidence 1 122335688999999999998753 2 5899999986 443 3343332 1
Q ss_pred CccceeeEEEcCCCCEEEEEeCCC---cEEEEecCCCceeeeeecCCCcceeEEEECCCCC
Q 010256 397 SIFDKFECCLSGDGGRVATGSYSN---LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP 454 (514)
Q Consensus 397 ~~~~v~~~~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 454 (514)
+.+++|+|||++|++++.++ .|++||+..+ ....+..|...|.+++|+|...
T Consensus 356 ----~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~--~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 356 ----DETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR--FKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp ----CEEEEECTTSSEEEEEEEETTEEEEEEEETTSC--CEEECCCSSSEEEEEEECCCCC
T ss_pred ----cCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC--cEEEeeCCCCCCcCCccccccc
Confidence 33899999999999888776 7999999743 3468889999999999999744
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.8e-23 Score=210.30 Aligned_cols=247 Identities=6% Similarity=-0.007 Sum_probs=160.4
Q ss_pred CeEEEEECCCCCEEEEecCCeEEEEeccC-----CCceeeeeccCCC-------cccccCCceEEEEEecCCCcEEEEEe
Q 010256 235 HINSISNNSDGETFISADDLRINLWNLEI-----SNQSFNIVDVKPA-------NMEDLTEVITSAEFHPTHCNMLAYSS 302 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~~d~~i~iwd~~~-----~~~~~~~~~~~~~-------~~~~~~~~i~~v~~~p~~~~~l~~~~ 302 (514)
.+.+++|+|||+.|+++.++.|++||+.+ ++.. .+...... ..+.+...+.++.|+||| +.|++++
T Consensus 122 ~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~-~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg-~~la~~~ 199 (706)
T 2z3z_A 122 ETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAI-AVTIDGTETLVYGQAVHQREFGIEKGTFWSPKG-SCLAFYR 199 (706)
T ss_dssp CCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCE-ESCSCCBTTEEESSCCGGGCTTCCCSEEECTTS-SEEEEEE
T ss_pred cccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcE-EeccCCCCCeEcccchhhhhcCCCceEEECCCC-CEEEEEE
Confidence 35567899999999988889999999986 4332 21100000 000111225789999999 8888887
Q ss_pred ---------------------------------cCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 303 ---------------------------------SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 303 ---------------------------------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
.+..|++||+.+++... ... ...|...+.+++|
T Consensus 200 ~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~----~~~----------~~~~~~~~~~~~~ 265 (706)
T 2z3z_A 200 MDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVY----LQT----------GEPKEKFLTNLSW 265 (706)
T ss_dssp EECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEE----CCC----------CSCTTCEEEEEEE
T ss_pred ECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEe----ecc----------CCCCceeEeeEEE
Confidence 34679999998876421 110 0123457899999
Q ss_pred ecCCCEEEEEe-CC-----eEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcC--CCCEEEEEeCCCc
Q 010256 350 ARNGRHILSRD-YM-----TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG--DGGRVATGSYSNL 421 (514)
Q Consensus 350 s~~g~~l~~~~-~~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~s~~~dg~ 421 (514)
+|||+.|++++ ++ .|.+||+.+ ++....+....... .+..+..++|+| ||++|++++.|+.
T Consensus 266 spdg~~l~~~~~~~~~~~~~v~~~d~~~-g~~~~~~~~~~~~~----------~~~~~~~~~~sp~~dg~~l~~~~~~g~ 334 (706)
T 2z3z_A 266 SPDENILYVAEVNRAQNECKVNAYDAET-GRFVRTLFVETDKH----------YVEPLHPLTFLPGSNNQFIWQSRRDGW 334 (706)
T ss_dssp CTTSSEEEEEEECTTSCEEEEEEEETTT-CCEEEEEEEEECSS----------CCCCCSCCEECTTCSSEEEEEECTTSS
T ss_pred ECCCCEEEEEEeCCCCCeeEEEEEECCC-CceeeEEEEccCCC----------eECccCCceeecCCCCEEEEEEccCCc
Confidence 99999888753 33 899999986 53443333221110 000012689999 9999999999999
Q ss_pred EEEEecCCCceeeeeecCCCcceeE-EEECCCCCceeecCC-CC----eEEEeeCCCCCccccCCcccccccceEEEEEc
Q 010256 422 FRVFGCSEGSAESTTLEASKNPMRR-QVQTPSRPSRPLGSL-SG----VVRRVKGADNSALDANGNAFDFSMKLLHLAWH 495 (514)
Q Consensus 422 i~iwd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~s~s~-d~----~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s 495 (514)
++||.+.........+..+...+.. +.|+|+++.|+.++. ++ .|..++...-. ...+.+...+.+++||
T Consensus 335 ~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-----~~~l~~~~~~~~~~~s 409 (706)
T 2z3z_A 335 NHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-----TKDLTPESGMHRTQLS 409 (706)
T ss_dssp CEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-----CEESCCSSSEEEEEEC
T ss_pred cEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-----ceeccCCCceEEEEEC
Confidence 9999876322344667777777776 799999997765544 43 44443321111 1122356778999999
Q ss_pred CCCCEEEEEec-----CcEEEEe
Q 010256 496 PSENSIACAAS-----NSLYMYY 513 (514)
Q Consensus 496 pd~~~l~~~~~-----~~~~i~~ 513 (514)
|||++|+.... ..+++|.
T Consensus 410 pdg~~l~~~~~~~~~p~~i~l~d 432 (706)
T 2z3z_A 410 PDGSAIIDIFQSPTVPRKVTVTN 432 (706)
T ss_dssp TTSSEEEEEEECSSCSCEEEEEE
T ss_pred CCCCEEEEEecCCCCCcEEEEEE
Confidence 99999986643 2378875
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-21 Score=179.94 Aligned_cols=288 Identities=9% Similarity=0.100 Sum_probs=182.0
Q ss_pred EEEcCCCCe-EEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEE
Q 010256 41 IEFDKSGDH-LATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (514)
Q Consensus 41 ~~~s~~g~~-l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~ 119 (514)
..|.+++.+ +++++.++.|.+||..+++.. ..+..+. ..+ .++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~-----------------------~~~~~~~------------~~~-~~~ 46 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEIL-----------------------NQITLGY------------DFV-DTA 46 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEE-----------------------EEEECCC------------CEE-EEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCccccee-----------------------eeEEccC------------Ccc-eEE
Confidence 456665554 777788999999999877632 2233333 446 899
Q ss_pred EeeCCCCcEEEEeeC-CCeEEEEEcCccEE-EEEeeccCCCccccCCcceecccccCCc-eeeccCCCccccccCCCCCC
Q 010256 120 WCQSANSALYLLSTN-DKTIKLWKVQEKKV-KKVFDWNVHPEKAAGNGPIFGSHVSAIP-KSYMANGGCGERNFGCASND 196 (514)
Q Consensus 120 ~~~~~~~~~l~s~~~-d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 196 (514)
| +++++++++++. ++.|.+||+.+++. ......... +.. ++|+|+|+.+
T Consensus 47 ~--s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~----------------~~~~~~~s~dg~~l---------- 98 (331)
T 3u4y_A 47 I--TSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQS----------------SMADVDITPDDQFA---------- 98 (331)
T ss_dssp E--CSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSS----------------CCCCEEECTTSSEE----------
T ss_pred E--cCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCC----------------CccceEECCCCCEE----------
Confidence 9 567776666654 89999999998875 443333311 114 8999999987
Q ss_pred cccCCCCC-C--cEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCe-EEEEeccCCCceeee
Q 010256 197 SSFPPGGV-S--SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLR-INLWNLEISNQSFNI 270 (514)
Q Consensus 197 ~~~~~~~~-~--~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~-i~iwd~~~~~~~~~~ 270 (514)
++...+ + .|.+|| +...+ ....+ .......+++|+|+|++++++ .++. |.+|++...+.....
T Consensus 99 --~~~~~~~~~~~i~v~d-~~~~~------~~~~~--~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~ 167 (331)
T 3u4y_A 99 --VTVTGLNHPFNMQSYS-FLKNK------FISTI--PIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDT 167 (331)
T ss_dssp --EECCCSSSSCEEEEEE-TTTTE------EEEEE--ECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEE
T ss_pred --EEecCCCCcccEEEEE-CCCCC------eEEEE--ECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeec
Confidence 644444 3 899999 33222 11121 223456899999999865554 5677 999999854433221
Q ss_pred eccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEe
Q 010256 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (514)
Q Consensus 271 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 350 (514)
. .........+..++|+|++..+++++..++.|.+||+.+++... ....+.. ...+..++|+
T Consensus 168 ~----~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~-~~~~~~~-------------~~~~~~~~~s 229 (331)
T 3u4y_A 168 G----QEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT-LLNAVGT-------------NNLPGTIVVS 229 (331)
T ss_dssp E----EEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE-EEEEEEC-------------SSCCCCEEEC
T ss_pred C----CccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc-eeeeccC-------------CCCCceEEEC
Confidence 0 01112345579999999993355556678999999998876411 0112221 1457889999
Q ss_pred cCCCEEEEEe--CCeEEEEEccCCCCc--eeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe-CCCcEEEE
Q 010256 351 RNGRHILSRD--YMTLKLWDINMDSGP--VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVF 425 (514)
Q Consensus 351 ~~g~~l~~~~--~~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iw 425 (514)
|+|++++.+. ++.|.+||+.+ ++. +..+..+-.... ........++|+|||++|++++ .++.|.+|
T Consensus 230 pdg~~l~v~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 300 (331)
T 3u4y_A 230 RDGSTVYVLTESTVDVFNFNQLS-GTLSFVKSFGHGLLIDP--------RPLFGANQMALNKTETKLFISANISRELKVF 300 (331)
T ss_dssp TTSSEEEEECSSEEEEEEEETTT-TEEEEEEEEECCCCCCC--------GGGTTCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCCEEEEEEcCCCEEEEEECCC-CceeeecccccccccCC--------CCcccccceEECCCCCEEEEecCCCCcEEEE
Confidence 9999877653 37899999986 554 222222100000 0111112589999999886555 56799999
Q ss_pred ecCCC
Q 010256 426 GCSEG 430 (514)
Q Consensus 426 d~~~~ 430 (514)
|+...
T Consensus 301 d~~~~ 305 (331)
T 3u4y_A 301 TISGK 305 (331)
T ss_dssp ETTSC
T ss_pred EecCC
Confidence 99854
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-21 Score=179.98 Aligned_cols=283 Identities=8% Similarity=0.042 Sum_probs=197.2
Q ss_pred ccccceEEEEEcCCCCeEEEecC-------CCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccc
Q 010256 33 QEVDIISAIEFDKSGDHLATGDR-------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDY 105 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 105 (514)
.....+..++|+|+|++|++++. ++.|.+||..+++.. ..+...
T Consensus 38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~-----------------------~~~~~~------ 88 (353)
T 3vgz_A 38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVT-----------------------QAIHND------ 88 (353)
T ss_dssp EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEE-----------------------EEEEES------
T ss_pred hhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEE-----------------------EEEecC------
Confidence 44567889999999998888774 568999998876632 222221
Q ss_pred ccccccccceeEEEEeeCCCCcEEEE-eeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCC
Q 010256 106 LKSLEIEEKINKIRWCQSANSALYLL-STNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (514)
Q Consensus 106 ~~~~~~~~~v~~i~~~~~~~~~~l~s-~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 184 (514)
..+..++| +++++++++ ...++.|.+||..+++............
T Consensus 89 -------~~~~~~~~--s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~------------------------- 134 (353)
T 3vgz_A 89 -------LKPFGATI--NNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKR------------------------- 134 (353)
T ss_dssp -------SCCCSEEE--ETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCC-------------------------
T ss_pred -------CCcceEEE--CCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCcc-------------------------
Confidence 34677888 456665554 5668999999999887655443321000
Q ss_pred ccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe---cCCeEEEEec
Q 010256 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA---DDLRINLWNL 261 (514)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~---~d~~i~iwd~ 261 (514)
.+ ......+.+++|+|+++.++++ .++.|.+||.
T Consensus 135 -------------------------------~~------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~ 171 (353)
T 3vgz_A 135 -------------------------------TE------------EVRPLQPRELVADDATNTVYISGIGKESVIWVVDG 171 (353)
T ss_dssp -------------------------------CS------------SCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEET
T ss_pred -------------------------------cc------------ccCCCCCceEEECCCCCEEEEEecCCCceEEEEcC
Confidence 00 0011235789999999977765 3789999999
Q ss_pred cCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccc
Q 010256 262 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 341 (514)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (514)
++.+.... +..+...+.+++|+|++ +.+++++.++.|.+||+.+++.. ..+.... .++.
T Consensus 172 ~~~~~~~~--------~~~~~~~~~~~~~s~dg-~~l~~~~~~~~i~~~d~~~~~~~----~~~~~~~--------~~~~ 230 (353)
T 3vgz_A 172 GNIKLKTA--------IQNTGKMSTGLALDSEG-KRLYTTNADGELITIDTADNKIL----SRKKLLD--------DGKE 230 (353)
T ss_dssp TTTEEEEE--------ECCCCTTCCCCEEETTT-TEEEEECTTSEEEEEETTTTEEE----EEEECCC--------SSSC
T ss_pred CCCceEEE--------ecCCCCccceEEECCCC-CEEEEEcCCCeEEEEECCCCeEE----EEEEcCC--------CCCC
Confidence 86654332 22234457889999999 78888999999999999987753 2222110 1123
Q ss_pred cceeEEEEecCCCEEEEEe-C-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe-C
Q 010256 342 ASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-Y 418 (514)
Q Consensus 342 ~~i~~~~~s~~g~~l~~~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~ 418 (514)
..+..++|+|+|++++.++ + +.|.+||..+ ++.+..+...... .++|+|+|++++.++ .
T Consensus 231 ~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~~~~~-----------------~~~~s~dg~~l~v~~~~ 292 (353)
T 3vgz_A 231 HFFINISLDTARQRAFITDSKAAEVLVVDTRN-GNILAKVAAPESL-----------------AVLFNPARNEAYVTHRQ 292 (353)
T ss_dssp CCEEEEEEETTTTEEEEEESSSSEEEEEETTT-CCEEEEEECSSCC-----------------CEEEETTTTEEEEEETT
T ss_pred cccceEEECCCCCEEEEEeCCCCEEEEEECCC-CcEEEEEEcCCCc-----------------eEEECCCCCEEEEEECC
Confidence 4678899999999877753 3 8999999987 7777766643321 799999999666555 7
Q ss_pred CCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCC
Q 010256 419 SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLS 462 (514)
Q Consensus 419 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d 462 (514)
++.|.+||..+++. ...+... ..+..++|+|++++|+.+..+
T Consensus 293 ~~~v~~~d~~~~~~-~~~~~~~-~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 293 AGKVSVIDAKSYKV-VKTFDTP-THPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp TTEEEEEETTTTEE-EEEEECC-SEEEEEEECTTSCEEEEEEEC
T ss_pred CCeEEEEECCCCeE-EEEEecC-CCCCeEEEcCCCCEEEEEEcc
Confidence 89999999988743 3444443 367899999999977666543
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-21 Score=181.01 Aligned_cols=235 Identities=14% Similarity=0.149 Sum_probs=142.7
Q ss_pred CeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEe-cCCeEEEEE
Q 010256 235 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLID 311 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg~i~~wd 311 (514)
.+..++|+|++++|+++ .++.|.+||+..+ ....... .+. ....+.+++|+|++ +.+++++ .++.|++||
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~-~~~~~~~----~~~-~~~~~~~~~~s~dg-~~l~~~~~~~~~v~~~d 157 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDG-LPVGVVD----VVE-GLDGCHSANISPDN-RTLWVPALKQDRICLFT 157 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETT-EEEEEEE----EEC-CCTTBCCCEECTTS-SEEEEEEGGGTEEEEEE
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCC-ccccccc----ccc-CCCCceEEEECCCC-CEEEEecCCCCEEEEEE
Confidence 56789999999987665 5899999999522 1111110 112 23458889999999 6666666 899999999
Q ss_pred cCC-Ccccccccc--ceeccCCCCccceeeccccceeEEEEecCCCEEEEEe--CCeEEEEEccCCCCceeeeeeccccc
Q 010256 312 MRQ-SALCDTHSK--LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVATFQVHEHLR 386 (514)
Q Consensus 312 ~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~ 386 (514)
+.+ ++... .. .+... ....+..++|+|+|+++++++ ++.|.+||+......+..........
T Consensus 158 ~~~~~~~~~--~~~~~~~~~-----------~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~ 224 (343)
T 1ri6_A 158 VSDDGHLVA--QDPAEVTTV-----------EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMP 224 (343)
T ss_dssp ECTTSCEEE--EEEEEEECS-----------TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSC
T ss_pred ecCCCceee--ecccccccC-----------CCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccC
Confidence 987 44311 00 11111 113678899999999776643 49999999963122221111111000
Q ss_pred cccccccccCCccceeeEEEcCCCCEEE-EEeCCCcEEEEecCC--Cc-eeeeeecCCCcceeEEEECCCCCceeecC-C
Q 010256 387 PKLCDLYENDSIFDKFECCLSGDGGRVA-TGSYSNLFRVFGCSE--GS-AESTTLEASKNPMRRQVQTPSRPSRPLGS-L 461 (514)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~dg~i~iwd~~~--~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~s-~ 461 (514)
.. + .....+..++|+|+|++|+ ++..++.|++||+.. +. .....+..+.. +..++|+|++++|++++ .
T Consensus 225 ~~----~--~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~ 297 (343)
T 1ri6_A 225 EN----F--SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQK 297 (343)
T ss_dssp TT----C--CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTT
T ss_pred cc----c--cccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCC
Confidence 00 0 0011133699999999877 445789999999983 22 22234444444 88999999999887776 6
Q ss_pred CCeEEEe--eCC--CCCccccCCcccccccceEEEEEcCCCCE
Q 010256 462 SGVVRRV--KGA--DNSALDANGNAFDFSMKLLHLAWHPSENS 500 (514)
Q Consensus 462 d~~v~i~--~~~--~~~~~~~~~~~~~~~~~v~~~~~spd~~~ 500 (514)
++.+.++ +.. .+. . ...+.......+++|.|+.+.
T Consensus 298 ~~~v~v~~~d~~~g~~~---~-~~~~~~g~~p~~i~~~~~~~~ 336 (343)
T 1ri6_A 298 SHHISVYEIVGEQGLLH---E-KGRYAVGQGPMWVVVNAHEGG 336 (343)
T ss_dssp TCEEEEEEEETTTTEEE---E-EEEEECSSSCCEEEEEEEC--
T ss_pred CCeEEEEEEcCCCceee---E-ccccccCCCCeeEEEEcccCC
Confidence 8999983 311 111 0 011112345667777776553
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.90 E-value=4e-22 Score=180.63 Aligned_cols=258 Identities=13% Similarity=0.124 Sum_probs=177.8
Q ss_pred EecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEE
Q 010256 52 TGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLL 131 (514)
Q Consensus 52 tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s 131 (514)
.++.|+.|++||+.+++.. .+..|. ..|.+++| ++++++|++
T Consensus 17 ~~~~~~~i~~~d~~~~~~~------------------------~~~~~~------------~~v~~~~~--spdg~~l~~ 58 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR------------------------VVWQTP------------ELFEAPNW--SPDGKYLLL 58 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE------------------------EEEEES------------SCCEEEEE--CTTSSEEEE
T ss_pred CCCcceeEEEEeCCCCcee------------------------eeccCC------------cceEeeEE--CCCCCEEEE
Confidence 3467899999998776531 233455 77999999 667888888
Q ss_pred eeCCCeEEEEEcCc-cEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEec
Q 010256 132 STNDKTIKLWKVQE-KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLP 210 (514)
Q Consensus 132 ~~~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~ 210 (514)
++ ++.|++||+.+ ++......
T Consensus 59 ~~-~~~i~~~d~~~~~~~~~~~~--------------------------------------------------------- 80 (297)
T 2ojh_A 59 NS-EGLLYRLSLAGDPSPEKVDT--------------------------------------------------------- 80 (297)
T ss_dssp EE-TTEEEEEESSSCCSCEECCC---------------------------------------------------------
T ss_pred Ec-CCeEEEEeCCCCCCceEecc---------------------------------------------------------
Confidence 76 78999999987 54221100
Q ss_pred eeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-c--CCeEEEEeccCCCceeeeeccCCCcccccCCceEE
Q 010256 211 VVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITS 287 (514)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 287 (514)
..+...+.+++|+|++++|+++ . ++...+|.++....... .+.. ...+..
T Consensus 81 -------------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~-------~~~~-~~~~~~ 133 (297)
T 2ojh_A 81 -------------------GFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPR-------LMTK-NLPSYW 133 (297)
T ss_dssp -------------------TTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCE-------ECCS-SSSEEE
T ss_pred -------------------ccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceE-------Eeec-CCCccc
Confidence 1122456788999999999887 3 24555555432222111 1222 234889
Q ss_pred EEEecCCCcEEE-EEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe--CCeE
Q 010256 288 AEFHPTHCNMLA-YSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTL 364 (514)
Q Consensus 288 v~~~p~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~~~i 364 (514)
++|+|++ +.|+ ++..++.+++|+++..... ... +..+...+.+++|+|+|++|+.+. ++.+
T Consensus 134 ~~~spdg-~~l~~~~~~~~~~~l~~~~~~~~~---~~~------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~ 197 (297)
T 2ojh_A 134 HGWSPDG-KSFTYCGIRDQVFDIYSMDIDSGV---ETR------------LTHGEGRNDGPDYSPDGRWIYFNSSRTGQM 197 (297)
T ss_dssp EEECTTS-SEEEEEEEETTEEEEEEEETTTCC---EEE------------CCCSSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred eEECCCC-CEEEEEECCCCceEEEEEECCCCc---ceE------------cccCCCccccceECCCCCEEEEEecCCCCc
Confidence 9999999 5555 7888999999997532111 111 223446789999999999888653 4889
Q ss_pred EEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCC-----------CcEEEEecCCCcee
Q 010256 365 KLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-----------NLFRVFGCSEGSAE 433 (514)
Q Consensus 365 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----------g~i~iwd~~~~~~~ 433 (514)
++|++...+..+..+..+... +..++|+|+|++|++++.+ +.|++||+.+++..
T Consensus 198 ~i~~~~~~~~~~~~~~~~~~~---------------~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 262 (297)
T 2ojh_A 198 QIWRVRVDGSSVERITDSAYG---------------DWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVE 262 (297)
T ss_dssp EEEEEETTSSCEEECCCCSEE---------------EEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCE
T ss_pred cEEEECCCCCCcEEEecCCcc---------------cCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCce
Confidence 999987435556555544432 3479999999999988765 56999999876443
Q ss_pred e-eeecCCCcceeEEEECCCCCceeecCCCC
Q 010256 434 S-TTLEASKNPMRRQVQTPSRPSRPLGSLSG 463 (514)
Q Consensus 434 ~-~~~~~~~~~v~~~~~~~~~~~l~s~s~d~ 463 (514)
. ..+.+|...+..+.|+|++++|++++.+.
T Consensus 263 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 263 TLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred eeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 2 34557888899999999999998887553
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.1e-22 Score=179.95 Aligned_cols=234 Identities=12% Similarity=0.086 Sum_probs=162.3
Q ss_pred cCccCeEEEEECCCCCEEEEecCCeEEEEeccC-CCceeeeeccCCCccccc-CCceEEEEEecCCCcEEEEEe--cCCe
Q 010256 231 AHDYHINSISNNSDGETFISADDLRINLWNLEI-SNQSFNIVDVKPANMEDL-TEVITSAEFHPTHCNMLAYSS--SKGS 306 (514)
Q Consensus 231 ~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~-~~~i~~v~~~p~~~~~l~~~~--~dg~ 306 (514)
.|...|.+++|+|++++|+++.++.|++||+.+ ++.. .+ ...+ ...+.+++|+|++ ++|++++ .++.
T Consensus 39 ~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~-~~-------~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~ 109 (297)
T 2ojh_A 39 QTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPE-KV-------DTGFATICNNDHGISPDG-ALYAISDKVEFGK 109 (297)
T ss_dssp EESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCE-EC-------CCTTCCCBCSCCEECTTS-SEEEEEECTTTSS
T ss_pred cCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCce-Ee-------ccccccccccceEECCCC-CEEEEEEeCCCCc
Confidence 455778999999999999999888999999986 4432 21 2223 4678899999999 7888888 3345
Q ss_pred EEEEEc--CCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEE-EE-eCCeEEEEEccCCCCceeeeeec
Q 010256 307 IRLIDM--RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL-SR-DYMTLKLWDINMDSGPVATFQVH 382 (514)
Q Consensus 307 i~~wd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~-~~-~~~~i~iwd~~~~~~~~~~~~~~ 382 (514)
..||.+ .++.. ..+.. + ..+..++|+|++++|+ ++ .++.++||++.........+..+
T Consensus 110 ~~l~~~~~~~~~~-----~~~~~------------~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 171 (297)
T 2ojh_A 110 SAIYLLPSTGGTP-----RLMTK------------N-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHG 171 (297)
T ss_dssp CEEEEEETTCCCC-----EECCS------------S-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCS
T ss_pred ceEEEEECCCCce-----EEeec------------C-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccC
Confidence 555554 43321 11111 1 2488899999999887 44 45899999976534444444433
Q ss_pred cccccccccccccCCccceeeEEEcCCCCEEEEEe-CCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCC
Q 010256 383 EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSL 461 (514)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~ 461 (514)
... +.+++|+|+|++|+.++ .++.+++|++.........+..|...+..+.|+|++++|++++.
T Consensus 172 ~~~---------------~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 236 (297)
T 2ojh_A 172 EGR---------------NDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSY 236 (297)
T ss_dssp SSC---------------EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEE
T ss_pred CCc---------------cccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEc
Confidence 322 34899999999888666 58999999986333444677788888999999999999998887
Q ss_pred C-----------CeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecC
Q 010256 462 S-----------GVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASN 507 (514)
Q Consensus 462 d-----------~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~ 507 (514)
+ +.+.+++...-.. ........+...+..++|+||+++|++++.+
T Consensus 237 ~~~~~~~~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 237 DADVFDHPRDLDVRVQLMDMDGGNV-ETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp ETTCCSCCSSEEEEEEEEETTSCSC-EEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred CCCCCcccccCceEEEEEecCCCCc-eeeeccCCCCcccccceECCCCCEEEEEEec
Confidence 6 3466633221110 0111122456788999999999999977643
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=8.4e-21 Score=175.88 Aligned_cols=283 Identities=12% Similarity=0.100 Sum_probs=175.0
Q ss_pred ccccccceEEEEEcCCCCeEEEecCC-CeEEEEEec--CCcccCCcccccccccccccCCccceeeeeeccCCCcccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRG-GRVVLFERT--DTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~d-g~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (514)
...|...+.+++|+|+|++|++++.+ +.|.+|++. +++.. ....+..+
T Consensus 33 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~---------------------~~~~~~~~-------- 83 (343)
T 1ri6_A 33 VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT---------------------FAAESALP-------- 83 (343)
T ss_dssp EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE---------------------EEEEEECS--------
T ss_pred eEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCcee---------------------eccccccC--------
Confidence 45677889999999999999888876 899999987 33311 22222222
Q ss_pred ccccccceeEEEEeeCCCCcEEEEee-CCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcc
Q 010256 108 SLEIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (514)
Q Consensus 108 ~~~~~~~v~~i~~~~~~~~~~l~s~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 186 (514)
..+..++| +++++++++++ .++.|.+||+.++........
T Consensus 84 -----~~~~~~~~--s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-------------------------------- 124 (343)
T 1ri6_A 84 -----GSLTHIST--DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV-------------------------------- 124 (343)
T ss_dssp -----SCCSEEEE--CTTSSEEEEEETTTTEEEEEEEETTEEEEEEEE--------------------------------
T ss_pred -----CCCcEEEE--cCCCCEEEEEecCCCeEEEEECCCCcccccccc--------------------------------
Confidence 45888999 56777777665 488999999853321111000
Q ss_pred ccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCeEEEEeccCC
Q 010256 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEIS 264 (514)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~ 264 (514)
......+.+++|+|+++.++++ .++.|++||+.+.
T Consensus 125 -------------------------------------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 161 (343)
T 1ri6_A 125 -------------------------------------------VEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDD 161 (343)
T ss_dssp -------------------------------------------ECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred -------------------------------------------ccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCC
Confidence 0011236778999999877765 7999999999863
Q ss_pred CceeeeeccCCCcccccCCceEEEEEecCCCcEE-EEEecCCeEEEEEcCC--CccccccccceeccCCCCccceeeccc
Q 010256 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNML-AYSSSKGSIRLIDMRQ--SALCDTHSKLFEEQEAPGTRSFFTEII 341 (514)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l-~~~~~dg~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (514)
......... . ........+..++|+|++ +++ +++..++.|.+||+.. +... ....+..... -....
T Consensus 162 ~~~~~~~~~-~-~~~~~~~~~~~~~~~pdg-~~l~~~~~~~~~i~~~~~~~~~g~~~--~~~~~~~~~~------~~~~~ 230 (343)
T 1ri6_A 162 GHLVAQDPA-E-VTTVEGAGPRHMVFHPNE-QYAYCVNELNSSVDVWELKDPHGNIE--CVQTLDMMPE------NFSDT 230 (343)
T ss_dssp SCEEEEEEE-E-EECSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEESSCTTSCCE--EEEEEECSCT------TCCSC
T ss_pred Cceeeeccc-c-cccCCCCCcceEEECCCC-CEEEEEeCCCCEEEEEEecCCCCcEE--EEeeccccCc------ccccc
Confidence 332211000 0 011124568899999999 555 5555899999999954 3211 0111110000 00012
Q ss_pred cceeEEEEecCCCEEEEE-e-CCeEEEEEccCCC---CceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEE
Q 010256 342 ASISDIKFARNGRHILSR-D-YMTLKLWDINMDS---GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 416 (514)
Q Consensus 342 ~~i~~~~~s~~g~~l~~~-~-~~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 416 (514)
..+..++|+|+|++|+++ . ++.|.+||+.... +.+..+..+.. +..++|+|+|++|+++
T Consensus 231 ~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~----------------~~~~~~s~dg~~l~~~ 294 (343)
T 1ri6_A 231 RWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ----------------PRGFNVDHSGKYLIAA 294 (343)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS----------------CCCEEECTTSSEEEEE
T ss_pred CCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc----------------cceEEECCCCCEEEEe
Confidence 357789999999988754 3 4999999998322 22222322221 2279999999988887
Q ss_pred e-CCCcEEEEecC--CCcee-eeeecCCCcceeEEEECCC
Q 010256 417 S-YSNLFRVFGCS--EGSAE-STTLEASKNPMRRQVQTPS 452 (514)
Q Consensus 417 ~-~dg~i~iwd~~--~~~~~-~~~~~~~~~~v~~~~~~~~ 452 (514)
+ .++.|.+|++. ++... ...+... .....++|.++
T Consensus 295 ~~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~i~~~~~ 333 (343)
T 1ri6_A 295 GQKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMWVVVNAH 333 (343)
T ss_dssp CTTTCEEEEEEEETTTTEEEEEEEEECS-SSCCEEEEEEE
T ss_pred cCCCCeEEEEEEcCCCceeeEccccccC-CCCeeEEEEcc
Confidence 7 68999999554 44322 1233332 33446666555
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.8e-22 Score=202.68 Aligned_cols=328 Identities=10% Similarity=0.015 Sum_probs=200.1
Q ss_pred EEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEE
Q 010256 40 AIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (514)
Q Consensus 40 ~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~ 119 (514)
+++|+|||++++++ .|+.|++||+.+++.. ..+.+|.. ....+.+++
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~-----------------------~~~~~~~~---------~~~~~~~~~ 66 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSY-----------------------TILSNRTM---------KSVNASNYG 66 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEE-----------------------EEECHHHH---------HTTTCSEEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEE-----------------------EEEccccc---------cccceeeEE
Confidence 78999999766665 6999999999877632 22232220 001388999
Q ss_pred EeeCCCCcEEEEeeC---------CCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 120 WCQSANSALYLLSTN---------DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 120 ~~~~~~~~~l~s~~~---------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
| ++||++|++++. ++.|++||+.+++......
T Consensus 67 ~--SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~------------------------------------- 107 (719)
T 1z68_A 67 L--SPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE------------------------------------- 107 (719)
T ss_dssp E--CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-------------------------------------
T ss_pred E--CCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee-------------------------------------
Confidence 9 678889998876 7899999998876310000
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~ 270 (514)
+ ...+..++|+|||+.|+.+.++.|++|++.+++.. .+
T Consensus 108 --------------------------------------l---~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~-~l 145 (719)
T 1z68_A 108 --------------------------------------L---PRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPF-QI 145 (719)
T ss_dssp --------------------------------------C---CSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCE-EC
T ss_pred --------------------------------------c---CcccccceECCCCCEEEEEECCeEEEEeCCCCCcE-EE
Confidence 0 02366789999999999998889999999865432 22
Q ss_pred e-ccCCC-cccccCC---------ceEEEEEecCCCcEEEEEecCC----------------------------------
Q 010256 271 V-DVKPA-NMEDLTE---------VITSAEFHPTHCNMLAYSSSKG---------------------------------- 305 (514)
Q Consensus 271 ~-~~~~~-~~~~~~~---------~i~~v~~~p~~~~~l~~~~~dg---------------------------------- 305 (514)
. ..... .+.++.. ...+++|+||| +.|++++.|.
T Consensus 146 ~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~ 224 (719)
T 1z68_A 146 TFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVV 224 (719)
T ss_dssp CCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEE
T ss_pred ecCCCcCCeEcccccceeeeecccCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCee
Confidence 1 00000 0111111 12489999999 8888887652
Q ss_pred eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-----CeEEEEE----ccCCCCce
Q 010256 306 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-----MTLKLWD----INMDSGPV 376 (514)
Q Consensus 306 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-----~~i~iwd----~~~~~~~~ 376 (514)
.|++||+.+++.... . .+.. ...+.+|...+.+++|+||++++++..+ ..|.+|| +.+ ++..
T Consensus 225 ~l~~~d~~~~~~~~~-~-~~~~------~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~-g~~~ 295 (719)
T 1z68_A 225 RIFIIDTTYPAYVGP-Q-EVPV------PAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQT-WDCP 295 (719)
T ss_dssp EEEEEESSCHHHHCC-E-ECCC------CHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSS-EECC
T ss_pred EEEEEECCCCCccce-e-EccC------CccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCC-CceE
Confidence 788899887653100 0 0000 0113345678999999999887777422 3588889 654 4444
Q ss_pred eee----eeccccccccccccccCCccceeeEEEcCCCCEEEE--EeCCC--cEEEEecCCCceeeeeecCCCcceeEEE
Q 010256 377 ATF----QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT--GSYSN--LFRVFGCSEGSAESTTLEASKNPMRRQV 448 (514)
Q Consensus 377 ~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 448 (514)
..+ ..+...... . ....++|+|||+.|+. ...+| .|++||+.++. ...+..+...+..+.
T Consensus 296 ~~~~~~~~~~~~~~~~-------~---~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~--~~~lt~~~~~v~~~~ 363 (719)
T 1z68_A 296 KTQEHIEESRTGWAGG-------F---FVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN--AIQITSGKWEAINIF 363 (719)
T ss_dssp GGGEEEEECSSSCSSS-------S---SCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT--CEECSCSSSCEEEEE
T ss_pred EEEecccccCCceEcc-------c---cCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc--eEecccCceEEEEEE
Confidence 333 233322100 0 0015789999996554 44555 57777877654 345555666677777
Q ss_pred ECCCCCceeecCCC-----CeEEE--ee--CCCCCccccCCcccccccceEEEEEcCCCCEEEEE
Q 010256 449 QTPSRPSRPLGSLS-----GVVRR--VK--GADNSALDANGNAFDFSMKLLHLAWHPSENSIACA 504 (514)
Q Consensus 449 ~~~~~~~l~s~s~d-----~~v~i--~~--~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~ 504 (514)
+. +++.|+..+.+ +..++ ++ +.......+.....++...+..+.|+||+++|+..
T Consensus 364 ~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~ 427 (719)
T 1z68_A 364 RV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALV 427 (719)
T ss_dssp EE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEE
T ss_pred EE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEE
Confidence 77 77776665544 66666 22 12111001111111245678899999999988854
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-21 Score=200.14 Aligned_cols=304 Identities=8% Similarity=-0.010 Sum_probs=194.3
Q ss_pred cceeEEEEeeCCCCcEEEEeeC-CC-----eEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcc
Q 010256 113 EKINKIRWCQSANSALYLLSTN-DK-----TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~-d~-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 186 (514)
..+.+++| ++||++|++++. |+ .|++||+.+++.......+.. .|+++.+
T Consensus 37 ~~~~~~~~--SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~----------------------~~~~~~~ 92 (741)
T 2ecf_A 37 PTLMKPKV--APDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVV----------------------LPGTETL 92 (741)
T ss_dssp CCCEEEEE--CTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGT----------------------C------
T ss_pred CCCCCceE--ecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhc----------------------ccccccc
Confidence 56999999 678899999987 88 999999999887665543311 1223222
Q ss_pred ccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCC-
Q 010256 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISN- 265 (514)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~- 265 (514)
.. ..... ..... ......+.+++|+|||++|+++.++.|++||+.++.
T Consensus 93 ------------~~--~~~~~---------------~~~~~--~~~~~~v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~ 141 (741)
T 2ecf_A 93 ------------SD--EEKAR---------------RERQR--IAAMTGIVDYQWSPDAQRLLFPLGGELYLYDLKQEGK 141 (741)
T ss_dssp ---------------------------------------------CCEESCCCEECTTSSEEEEEETTEEEEEESSSCST
T ss_pred ------------cc--hhhhh---------------hhhhh--hccccCcceeEECCCCCEEEEEeCCcEEEEECCCCCc
Confidence 00 00000 00000 011234778999999999999955999999998652
Q ss_pred -ceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeec-----
Q 010256 266 -QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE----- 339 (514)
Q Consensus 266 -~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 339 (514)
... .+..+...+..++|+||| +.|++++ ++.|++||+.+++.. +....... ....+
T Consensus 142 ~~~~--------~l~~~~~~~~~~~~SPDG-~~la~~~-~~~i~~~d~~~g~~~----~~~~~~~~----~~~~g~~~~v 203 (741)
T 2ecf_A 142 AAVR--------QLTHGEGFATDAKLSPKG-GFVSFIR-GRNLWVIDLASGRQM----QLTADGST----TIGNGIAEFV 203 (741)
T ss_dssp TSCC--------BCCCSSSCEEEEEECTTS-SEEEEEE-TTEEEEEETTTTEEE----ECCCCCCS----SEEESCCCHH
T ss_pred ceEE--------EcccCCcccccccCCCCC-CEEEEEe-CCcEEEEecCCCCEE----EeccCCcc----ceecccccee
Confidence 221 345567789999999999 8888877 569999999887642 11111100 00000
Q ss_pred ---cccceeEEEEecCCCEEEEEe-CC---------------------------------eEEEEEccCCCCceeeeee-
Q 010256 340 ---IIASISDIKFARNGRHILSRD-YM---------------------------------TLKLWDINMDSGPVATFQV- 381 (514)
Q Consensus 340 ---~~~~i~~~~~s~~g~~l~~~~-~~---------------------------------~i~iwd~~~~~~~~~~~~~- 381 (514)
....+.+++|||||++|++++ ++ .|.+||+...++.......
T Consensus 204 ~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~ 283 (741)
T 2ecf_A 204 ADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGK 283 (741)
T ss_dssp HHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCS
T ss_pred eeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCC
Confidence 012257899999999998863 23 7778887631222221111
Q ss_pred -ccccccccccccccCCccceeeEEEcCCCCEEEEEeC-----CCcEEEEecCCCceeeeeecCCCc----ceeEEEECC
Q 010256 382 -HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-----SNLFRVFGCSEGSAESTTLEASKN----PMRRQVQTP 451 (514)
Q Consensus 382 -~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~----~v~~~~~~~ 451 (514)
+.. .+..++| |||++|++++. +..|++||+.+++.. ..+..+.. .+..+.|+|
T Consensus 284 ~~~~---------------~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~~~~sp 346 (741)
T 2ecf_A 284 EQDI---------------YLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQR-VLAHETSPTWVPLHNSLRFLD 346 (741)
T ss_dssp CSSE---------------EEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEE-EEEEEECSSCCCCCSCCEECT
T ss_pred Ccce---------------EEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceE-EEEEcCCCCcCCcCCceEECC
Confidence 111 1348999 99999987653 568999999987543 44444432 456889999
Q ss_pred CCCceeecCCCCeEEE--ee--CCCCCccccCCcccccccceEEE-EEcCCCCEEEEE-ecC---cEEEEe
Q 010256 452 SRPSRPLGSLSGVVRR--VK--GADNSALDANGNAFDFSMKLLHL-AWHPSENSIACA-ASN---SLYMYY 513 (514)
Q Consensus 452 ~~~~l~s~s~d~~v~i--~~--~~~~~~~~~~~~~~~~~~~v~~~-~~spd~~~l~~~-~~~---~~~i~~ 513 (514)
|++++++++.|+.+++ ++ +. . .....+...|..+ +|+||++.|+.. +.+ .+.||.
T Consensus 347 dg~~~~~~~~~g~~~l~~~~~~~~-~------~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 347 DGSILWSSERTGFQHLYRIDSKGK-A------AALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp TSCEEEEECTTSSCEEEEECSSSC-E------EESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred CCeEEEEecCCCccEEEEEcCCCC-e------eeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 9999999999998777 22 21 1 1122356678787 599999988744 444 566774
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.6e-21 Score=196.39 Aligned_cols=307 Identities=12% Similarity=0.059 Sum_probs=187.8
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccce
Q 010256 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (514)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (514)
..|++++|||| .+++.+ .++.|++||+.+++.. .+..+. ..+
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~------------------------~l~~~~------------~~~ 123 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVT------------------------YLFDTN------------EET 123 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEE------------------------EEECCT------------TCC
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceE------------------------EccCCc------------ccc
Confidence 56999999999 666655 4699999999776531 223333 558
Q ss_pred eEEEEeeCCCCcEEEEeeCCCeEEEEEcCc-----cEEEEEeeccCCCccccCCcc-ee-cccccCCceeeccCCCcccc
Q 010256 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQE-----KKVKKVFDWNVHPEKAAGNGP-IF-GSHVSAIPKSYMANGGCGER 188 (514)
Q Consensus 116 ~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~-----~~~~~~~~~~~~~~~~~~~~~-v~-~~~~~~~~~~~~~~~~~l~~ 188 (514)
.+++| +++|++|+++ .|+.|++|++.+ ++........... ...+. +. ........+.|+|||+.+..
T Consensus 124 ~~~~~--SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~---~~~g~~~~~ee~~~~~~~~~SpDg~~la~ 197 (706)
T 2z3z_A 124 ASLDF--SPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTET---LVYGQAVHQREFGIEKGTFWSPKGSCLAF 197 (706)
T ss_dssp TTCEE--CTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTT---EEESSCCGGGCTTCCCSEEECTTSSEEEE
T ss_pred cCCcC--CCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCC---eEcccchhhhhcCCCceEEECCCCCEEEE
Confidence 88899 6788888885 679999999998 7655433222110 00000 00 00001237899999998832
Q ss_pred ccCCCCC-------------------CcccC--CCCCCcEEeceeecccccccccccccccc-ccCccCeEEEEECCCCC
Q 010256 189 NFGCASN-------------------DSSFP--PGGVSSLRLPVVVTSQETNLVAGCRRIYA-HAHDYHINSISNNSDGE 246 (514)
Q Consensus 189 ~~~~~~~-------------------~~~~~--~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~ 246 (514)
....... .+... ...+..|.+|| +...+. ..... ..|...+.+++|+|||+
T Consensus 198 ~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d-~~~~~~------~~~~~~~~~~~~~~~~~~spdg~ 270 (706)
T 2z3z_A 198 YRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYH-LATGKT------VYLQTGEPKEKFLTNLSWSPDEN 270 (706)
T ss_dssp EEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEE-TTTTEE------EECCCCSCTTCEEEEEEECTTSS
T ss_pred EEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEE-CCCCce------EeeccCCCCceeEeeEEEECCCC
Confidence 2100000 00000 11446788888 332211 11111 25667899999999999
Q ss_pred EEEEe-cCC-----eEEEEeccCCCceeeeeccCCCcccccCCceEEEEEec--CCCcEEEEEecCCeEEEEEcC-CCcc
Q 010256 247 TFISA-DDL-----RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP--THCNMLAYSSSKGSIRLIDMR-QSAL 317 (514)
Q Consensus 247 ~l~s~-~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p--~~~~~l~~~~~dg~i~~wd~~-~~~~ 317 (514)
.|+++ .++ .|++||+.+++....+... ........+.+++|+| +| +++++++.|+.++||++. ++..
T Consensus 271 ~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~---~~~~~~~~~~~~~~sp~~dg-~~l~~~~~~g~~~l~~~~~~~~~ 346 (706)
T 2z3z_A 271 ILYVAEVNRAQNECKVNAYDAETGRFVRTLFVE---TDKHYVEPLHPLTFLPGSNN-QFIWQSRRDGWNHLYLYDTTGRL 346 (706)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTCCEEEEEEEE---ECSSCCCCCSCCEECTTCSS-EEEEEECTTSSCEEEEEETTSCE
T ss_pred EEEEEEeCCCCCeeEEEEEECCCCceeeEEEEc---cCCCeECccCCceeecCCCC-EEEEEEccCCccEEEEEECCCCE
Confidence 98886 554 9999999866333322110 0001112346789999 98 799999999999999886 3332
Q ss_pred ccccccceeccCCCCccceeeccccceeE-EEEecCCCEEEEE-eC-C----eEEEEEccCCCCceeeeeeccccccccc
Q 010256 318 CDTHSKLFEEQEAPGTRSFFTEIIASISD-IKFARNGRHILSR-DY-M----TLKLWDINMDSGPVATFQVHEHLRPKLC 390 (514)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~s~~g~~l~~~-~~-~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 390 (514)
... +..+...+.. ++|+|+|+.|+.+ .+ + .|..||+.. ++ ...+. +...
T Consensus 347 ----~~~------------l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-~~-~~~l~-~~~~----- 402 (706)
T 2z3z_A 347 ----IRQ------------VTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG-GK-TKDLT-PESG----- 402 (706)
T ss_dssp ----EEE------------CCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC-CC-CEESC-CSSS-----
T ss_pred ----EEe------------cCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC-CC-ceecc-CCCc-----
Confidence 111 2233355766 7999999988764 33 4 555566654 33 33332 2111
Q ss_pred cccccCCccceeeEEEcCCCCEEEEEeCC----CcEEEEecCCCc
Q 010256 391 DLYENDSIFDKFECCLSGDGGRVATGSYS----NLFRVFGCSEGS 431 (514)
Q Consensus 391 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~i~iwd~~~~~ 431 (514)
+.+++|+|||++|+....+ +.|++||+.+++
T Consensus 403 ----------~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 403 ----------MHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp ----------EEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred ----------eEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 3489999999998866443 569999998764
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.9e-20 Score=171.72 Aligned_cols=271 Identities=10% Similarity=0.108 Sum_probs=168.4
Q ss_pred ccccccceEEEEEcCCCCeEEEecC---CCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDR---GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (514)
...+...+..++|+|||+ |++++. ++.|.+|++.+++.. .+..+..+.
T Consensus 35 ~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~---------------------~~~~~~~~~------- 85 (347)
T 3hfq_A 35 LLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH---------------------KLNTVVAPG------- 85 (347)
T ss_dssp EEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE---------------------EEEEEEEES-------
T ss_pred eeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE---------------------EeeeeecCC-------
Confidence 345667788999999999 555543 689999999765421 223333343
Q ss_pred ccccccceeEEEEeeCCCCcEEEEee-CCCeEEEEEcC-ccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCc
Q 010256 108 SLEIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQ-EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (514)
Q Consensus 108 ~~~~~~~v~~i~~~~~~~~~~l~s~~-~d~~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 185 (514)
..+..++| +++|++|++++ .++.|.+|++. ++........... +..
T Consensus 86 -----~~p~~~a~--spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~-------------------------~~~ 133 (347)
T 3hfq_A 86 -----TPPAYVAV--DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHS-------------------------GHG 133 (347)
T ss_dssp -----CCCSEEEE--ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECC-------------------------CCC
T ss_pred -----CCCEEEEE--CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecC-------------------------CCC
Confidence 56889999 56788888877 78999999995 3333222111100 000
Q ss_pred cccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCC
Q 010256 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEIS 264 (514)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~ 264 (514)
+. ...+...+.+++|+|+|+++++. .++.|++|++...
T Consensus 134 --------------------------------------p~---~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~ 172 (347)
T 3hfq_A 134 --------------------------------------PR---PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDA 172 (347)
T ss_dssp --------------------------------------SS---TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTT
T ss_pred --------------------------------------CC---ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCC
Confidence 00 01233568899999999966666 7899999999833
Q ss_pred CceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCC--CccccccccceeccCCCCccceeecccc
Q 010256 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ--SALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (514)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (514)
......... .......+..++|+|+|..+++++..++.|.+|++.. ++.. ....+..... . +. ...
T Consensus 173 g~~~~~~~~----~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~--~~~~~~~~~~--~---~~-~~~ 240 (347)
T 3hfq_A 173 GQLSEQSVL----TMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFT--QLGIVKTIPA--D---YT-AHN 240 (347)
T ss_dssp SCEEEEEEE----ECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEE--EEEEEESSCT--T---CC-SCC
T ss_pred CcEEEeeeE----EcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceE--EeeeeeecCC--C---CC-CCC
Confidence 322211100 0112345788999999933455566789999999875 3321 0111111100 0 00 013
Q ss_pred ceeEEEEecCCCEEEE-Ee-CCeEEEEEccCCC--CceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeC
Q 010256 343 SISDIKFARNGRHILS-RD-YMTLKLWDINMDS--GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 418 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~-~~-~~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 418 (514)
.+..++|+|||++|++ .. ++.|.+|++...+ +.+..+..+... +..++|+|||++|++++.
T Consensus 241 ~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~spdg~~l~v~~~ 305 (347)
T 3hfq_A 241 GAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDF---------------PRDFDLDPTEAFVVVVNQ 305 (347)
T ss_dssp EEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSC---------------CCEEEECTTSSEEEEEET
T ss_pred cceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCC---------------cCeEEECCCCCEEEEEEc
Confidence 5888999999998855 44 4999999997422 223333332211 128999999998888775
Q ss_pred -CCcEEEEec--CCC
Q 010256 419 -SNLFRVFGC--SEG 430 (514)
Q Consensus 419 -dg~i~iwd~--~~~ 430 (514)
++.|.+|++ .++
T Consensus 306 ~~~~v~v~~~d~~tg 320 (347)
T 3hfq_A 306 NTDNATLYARDLTSG 320 (347)
T ss_dssp TTTEEEEEEECTTTC
T ss_pred CCCcEEEEEEeCCCC
Confidence 489999954 455
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-20 Score=171.36 Aligned_cols=272 Identities=7% Similarity=0.039 Sum_probs=179.1
Q ss_pred CcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCC
Q 010256 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (514)
Q Consensus 126 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 205 (514)
+..+++.+.++.|++||+.+++.......... .+ .++|+|+|+.+ +++...++
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~---------------~~-~~~~s~dg~~l-----------~~~~~~~~ 62 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEILNQITLGYD---------------FV-DTAITSDCSNV-----------VVTSDFCQ 62 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEEEEEECCCC---------------EE-EEEECSSSCEE-----------EEEESTTC
T ss_pred CEEEEEecCCCeEEEEeCcccceeeeEEccCC---------------cc-eEEEcCCCCEE-----------EEEeCCCC
Confidence 34577788899999999999987666554311 12 67899999865 14444578
Q ss_pred cEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cC-C--eEEEEeccCCCceeeeeccCCCccccc
Q 010256 206 SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD-L--RINLWNLEISNQSFNIVDVKPANMEDL 281 (514)
Q Consensus 206 ~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~ 281 (514)
.|.+|| ....+. .... ...+..+..+++|+|++++++++ .+ + .|.+||+++++....+ . .
T Consensus 63 ~i~~~d-~~~~~~-----~~~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~--------~-~ 126 (331)
T 3u4y_A 63 TLVQIE-TQLEPP-----KVVA-IQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTI--------P-I 126 (331)
T ss_dssp EEEEEE-CSSSSC-----EEEE-EEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEE--------E-C
T ss_pred eEEEEE-CCCCce-----eEEe-cccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEE--------E-C
Confidence 999998 332221 0111 23444555559999999999966 44 3 9999999865543221 1 2
Q ss_pred CCceEEEEEecCCCcEEEEEecCCe-EEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE-
Q 010256 282 TEVITSAEFHPTHCNMLAYSSSKGS-IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR- 359 (514)
Q Consensus 282 ~~~i~~v~~~p~~~~~l~~~~~dg~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~- 359 (514)
...+.+++|+|+|..++++...++. |.+|++........ .... ..........++|+|+|++++.+
T Consensus 127 ~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~----~~~~--------~~~~~~~~~~~~~spdg~~l~v~~ 194 (331)
T 3u4y_A 127 PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFD----TGQE--------FISGGTRPFNITFTPDGNFAFVAN 194 (331)
T ss_dssp CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEE----EEEE--------EECSSSSEEEEEECTTSSEEEEEE
T ss_pred CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEee----cCCc--------cccCCCCccceEECCCCCEEEEEe
Confidence 3456899999999445566666688 99999976432110 0000 00112457899999999977654
Q ss_pred e-CCeEEEEEccCCCCc---eeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe-CCCcEEEEecCCCceee
Q 010256 360 D-YMTLKLWDINMDSGP---VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAES 434 (514)
Q Consensus 360 ~-~~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~ 434 (514)
. ++.|.+||+.+ ++. +..+..+.. +..++|+|||++|+.++ .++.|.+||+.+++...
T Consensus 195 ~~~~~v~v~d~~~-~~~~~~~~~~~~~~~----------------~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~ 257 (331)
T 3u4y_A 195 LIGNSIGILETQN-PENITLLNAVGTNNL----------------PGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSF 257 (331)
T ss_dssp TTTTEEEEEECSS-TTSCEEEEEEECSSC----------------CCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEE
T ss_pred CCCCeEEEEECCC-CcccceeeeccCCCC----------------CceEEECCCCCEEEEEEcCCCEEEEEECCCCceee
Confidence 3 48999999987 676 555554322 12799999999776554 57889999999874411
Q ss_pred -eeecCC----Ccc---eeEEEECCCCCceeec-CCCCeEEEee
Q 010256 435 -TTLEAS----KNP---MRRQVQTPSRPSRPLG-SLSGVVRRVK 469 (514)
Q Consensus 435 -~~~~~~----~~~---v~~~~~~~~~~~l~s~-s~d~~v~i~~ 469 (514)
..+..+ ..+ ...++|+|++++|+++ ..++.|.+++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d 301 (331)
T 3u4y_A 258 VKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFT 301 (331)
T ss_dssp EEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence 222221 222 2458999999987554 5567898843
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=9e-21 Score=175.24 Aligned_cols=273 Identities=10% Similarity=0.087 Sum_probs=181.9
Q ss_pred CeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeec-cCCCcccccccccccc-ceeEEEEeeCCC
Q 010256 48 DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ-SHEPEFDYLKSLEIEE-KINKIRWCQSAN 125 (514)
Q Consensus 48 ~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~-~v~~i~~~~~~~ 125 (514)
++|++++.++.|.+||..+++. ...+. ++. . .+..++| +++
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~-----------------------~~~~~~~~~------------~~~~~~~~~--s~d 44 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAV-----------------------DKVITIADA------------GPTPMVPMV--APG 44 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEE-----------------------EEEEECTTC------------TTCCCCEEE--CTT
T ss_pred cEEEEcCCCCeEEEEECCCCcE-----------------------EEEEEcCCC------------CCCccceEE--cCC
Confidence 4789999999999999887653 22222 121 1 4788899 567
Q ss_pred CcEEE-EeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCC--
Q 010256 126 SALYL-LSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPG-- 202 (514)
Q Consensus 126 ~~~l~-s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-- 202 (514)
+++++ ++..++.|.+||+.+++............ ....+..++|+|+|+.+ +++.
T Consensus 45 g~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~----------~~~~~~~~~~s~dg~~l------------~~~~~~ 102 (337)
T 1pby_B 45 GRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE----------RVKSLFGAALSPDGKTL------------AIYESP 102 (337)
T ss_dssp SSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE----------EEECTTCEEECTTSSEE------------EEEEEE
T ss_pred CCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc----------ccccccceEECCCCCEE------------EEEecc
Confidence 76654 55678999999999988665544321000 00012378999999877 5553
Q ss_pred ----------CCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeec
Q 010256 203 ----------GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVD 272 (514)
Q Consensus 203 ----------~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~ 272 (514)
.++.|.+|| +...+ ....+ . ....+.+++|+|++++|+++ ++.|.+||+.+++....+ .
T Consensus 103 ~~~~~~~~~~~~~~i~v~d-~~~~~------~~~~~-~-~~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~~~~~~~-~ 171 (337)
T 1pby_B 103 VRLELTHFEVQPTRVALYD-AETLS------RRKAF-E-APRQITMLAWARDGSKLYGL-GRDLHVMDPEAGTLVEDK-P 171 (337)
T ss_dssp EEECSSCEEECCCEEEEEE-TTTTE------EEEEE-E-CCSSCCCEEECTTSSCEEEE-SSSEEEEETTTTEEEEEE-C
T ss_pred cccccccccccCceEEEEE-CCCCc------EEEEE-e-CCCCcceeEECCCCCEEEEe-CCeEEEEECCCCcEeeee-e
Confidence 468999999 32211 11111 1 13457789999999988887 688999999866543222 1
Q ss_pred cCCCcccccCCceEEEEEecCCCcEEEEEe-cCC-----------------------eEEEEEcCCCccccccccceecc
Q 010256 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKG-----------------------SIRLIDMRQSALCDTHSKLFEEQ 328 (514)
Q Consensus 273 ~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg-----------------------~i~~wd~~~~~~~~~~~~~~~~~ 328 (514)
....... +.|+|++ ..++..+ .++ .|.+||+.+++.. .+.
T Consensus 172 -----~~~~~~~---~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-----~~~-- 235 (337)
T 1pby_B 172 -----IQSWEAE---TYAQPDV-LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-----MRE-- 235 (337)
T ss_dssp -----STTTTTT---TBCCCBC-CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-----EEE--
T ss_pred -----ccccCCC---ceeCCCc-cEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-----Eee--
Confidence 1111122 2678888 4443333 233 4688998887642 111
Q ss_pred CCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcC
Q 010256 329 EAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 408 (514)
Q Consensus 329 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (514)
+..+...+.+++|+|+|++++++ ++.|.+||+.+ ++.+..+..+.. +.+++|+|
T Consensus 236 --------~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~-~~~~~~~~~~~~----------------~~~~~~s~ 289 (337)
T 1pby_B 236 --------VRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEK-NASIKRVPLPHS----------------YYSVNVST 289 (337)
T ss_dssp --------EEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTT-TEEEEEEECSSC----------------CCEEEECT
T ss_pred --------cCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCC-CcCcceecCCCc----------------eeeEEECC
Confidence 12233567889999999999988 68999999986 666666554322 22899999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCce
Q 010256 409 DGGRVATGSYSNLFRVFGCSEGSA 432 (514)
Q Consensus 409 ~~~~l~s~~~dg~i~iwd~~~~~~ 432 (514)
||++|++++.++.|++||+.+++.
T Consensus 290 dg~~l~~~~~~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 290 DGSTVWLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp TSCEEEEESBSSEEEEEETTTCCE
T ss_pred CCCEEEEEcCCCcEEEEECcCCcE
Confidence 999999999999999999998744
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-20 Score=193.29 Aligned_cols=289 Identities=9% Similarity=0.035 Sum_probs=179.9
Q ss_pred ceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCcc---CeEEEEECCCCCEEEEe-
Q 010256 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDY---HINSISNNSDGETFISA- 251 (514)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~l~s~- 251 (514)
.++|+|||+.+ ++ +.++.|++|| ....+. ... +..|.. .|.+++|+|||++|+++
T Consensus 21 ~~~~spdg~~~------------~~-~~dg~i~~~d-~~~g~~------~~~-~~~~~~~~~~v~~~~~SpDg~~l~~~~ 79 (723)
T 1xfd_A 21 EAKWISDTEFI------------YR-EQKGTVRLWN-VETNTS------TVL-IEGKKIESLRAIRYEISPDREYALFSY 79 (723)
T ss_dssp CCCBSSSSCBC------------CC-CSSSCEEEBC-GGGCCC------EEE-ECTTTTTTTTCSEEEECTTSSEEEEEE
T ss_pred ccEEcCCCcEE------------EE-eCCCCEEEEE-CCCCcE------EEE-eccccccccccceEEECCCCCEEEEEe
Confidence 78999999965 55 6889999999 333221 111 234443 48999999999999988
Q ss_pred cC---------CeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccc
Q 010256 252 DD---------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS 322 (514)
Q Consensus 252 ~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 322 (514)
.+ +.+++||+.+++. ..+ .....+...+..++|+||| +.|++++. +.|++||+.+++..
T Consensus 80 ~~~~~~~~~~~~~i~~~d~~~~~~-~~l-----~~~~~~~~~~~~~~~SPdG-~~la~~~~-~~i~~~~~~~g~~~---- 147 (723)
T 1xfd_A 80 NVEPIYQHSYTGYYVLSKIPHGDP-QSL-----DPPEVSNAKLQYAGWGPKG-QQLIFIFE-NNIYYCAHVGKQAI---- 147 (723)
T ss_dssp SCCCCSSSCCCSEEEEEESSSCCC-EEC-----CCTTCCSCCCSBCCBCSST-TCEEEEET-TEEEEESSSSSCCE----
T ss_pred cCccceeecceeeEEEEECCCCce-Eec-----cCCccccccccccEECCCC-CEEEEEEC-CeEEEEECCCCceE----
Confidence 53 7899999986653 211 1223455568899999999 78888776 79999999887642
Q ss_pred cceeccCCCCccceeeccc---------cceeEEEEecCCCEEEEEeC-C------------------------------
Q 010256 323 KLFEEQEAPGTRSFFTEII---------ASISDIKFARNGRHILSRDY-M------------------------------ 362 (514)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~---------~~i~~~~~s~~g~~l~~~~~-~------------------------------ 362 (514)
+....+.. ...+.++. +.+.+++|||||+.|+.++. +
T Consensus 148 ~~~~~~~~---~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 224 (723)
T 1xfd_A 148 RVVSTGKE---GVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSE 224 (723)
T ss_dssp EEECCCBT---TTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSC
T ss_pred EEecCCCC---CceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCC
Confidence 11111110 00011111 13478999999999998642 1
Q ss_pred ----eEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeC----CCcEEEEecCCCceee
Q 010256 363 ----TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY----SNLFRVFGCSEGSAES 434 (514)
Q Consensus 363 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~----dg~i~iwd~~~~~~~~ 434 (514)
.|++||+.+ ++....+..+.... ..-..+..++|+|||++|++.+. +..|++||+.+++...
T Consensus 225 ~~~~~l~~~d~~~-~~~~~~l~~~~~~~---------~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~ 294 (723)
T 1xfd_A 225 NPSISLHVIGLNG-PTHDLEMMPPDDPR---------MREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTK 294 (723)
T ss_dssp CCEEEEEEEESSS-SCCCEECCCCCCGG---------GSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEE
T ss_pred CCeeEEEEEECCC-CceeEEeeCCccCC---------CccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceE
Confidence 688888876 54444444331100 00112448999999999877653 3579999999875442
Q ss_pred eeecCCCcce----eEEEECCCCCceeec--CCCC----eEEE--ee---CCCCCccccCCcccccccceEE-EEEcCCC
Q 010256 435 TTLEASKNPM----RRQVQTPSRPSRPLG--SLSG----VVRR--VK---GADNSALDANGNAFDFSMKLLH-LAWHPSE 498 (514)
Q Consensus 435 ~~~~~~~~~v----~~~~~~~~~~~l~s~--s~d~----~v~i--~~---~~~~~~~~~~~~~~~~~~~v~~-~~~spd~ 498 (514)
.....+...+ ..+.|+|||+.|+.. ..++ ..++ ++ +.... ...........+.. ++|+|||
T Consensus 295 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~---~~~~l~~~~~~~~~~~~~spdg 371 (723)
T 1xfd_A 295 KHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSND---NIQSITSGDWDVTKILAYDEKG 371 (723)
T ss_dssp EEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSC---CCCBSCCSSSCEEEEEEEETTT
T ss_pred EEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcc---ceeEeecCCeEEEeeeEEcCCC
Confidence 2222333443 378999999988754 4566 4444 33 22100 00011112334444 6999999
Q ss_pred CEEEEEe-c---CcEEEEe
Q 010256 499 NSIACAA-S---NSLYMYY 513 (514)
Q Consensus 499 ~~l~~~~-~---~~~~i~~ 513 (514)
+.|+..+ + ....||.
T Consensus 372 ~~l~~~~~~~~~~~~~l~~ 390 (723)
T 1xfd_A 372 NKIYFLSTEDLPRRRQLYS 390 (723)
T ss_dssp TEEEEEESSSCTTCCEEEE
T ss_pred CEEEEEEcCCCCcceEEEE
Confidence 9998655 3 4566764
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.6e-21 Score=190.88 Aligned_cols=269 Identities=13% Similarity=0.034 Sum_probs=178.8
Q ss_pred cccceEEEEEcCCCCeEEEecC-CCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccc
Q 010256 34 EVDIISAIEFDKSGDHLATGDR-GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (514)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (514)
+..+|.+++|+|||++||+++. ||+++||++.+++. ..+..|. .
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~------------------------~~lt~~~-----------~ 64 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET------------------------VKLNREP-----------I 64 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE------------------------EECCSSC-----------C
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc------------------------Eeeeccc-----------c
Confidence 3567999999999999999886 99999999865542 1222332 0
Q ss_pred cceeEEEEeeCCCCcEEEEeeC---CCeEEEEEcCc---cEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcc
Q 010256 113 EKINKIRWCQSANSALYLLSTN---DKTIKLWKVQE---KKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~---d~~i~iw~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 186 (514)
..+..+.|+ ++ +++++++. +...++|.+.. +....
T Consensus 65 ~~~~~~~~s--pd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~------------------------------------ 105 (582)
T 3o4h_A 65 NSVLDPHYG--VG-RVILVRDVSKGAEQHALFKVNTSRPGEEQR------------------------------------ 105 (582)
T ss_dssp SEECEECTT--CS-EEEEEEECSTTSCCEEEEEEETTSTTCCEE------------------------------------
T ss_pred cccccccCC--CC-eEEEEeccCCCCcceEEEEEeccCCCcccc------------------------------------
Confidence 468899994 55 67777664 45566665432 11000
Q ss_pred ccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCC--EEEEecCCeEEEEeccCC
Q 010256 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGE--TFISADDLRINLWNLEIS 264 (514)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~~d~~i~iwd~~~~ 264 (514)
+ ... ..+...+|+|+++ .++++.++.+.+||+.++
T Consensus 106 --------------------------l---------------~~~--~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g 142 (582)
T 3o4h_A 106 --------------------------L---------------EAV--KPMRILSGVDTGEAVVFTGATEDRVALYALDGG 142 (582)
T ss_dssp --------------------------C---------------TTS--CSBEEEEEEECSSCEEEEEECSSCEEEEEEETT
T ss_pred --------------------------c---------------cCC--CCceeeeeCCCCCeEEEEecCCCCceEEEccCC
Confidence 0 000 1122456777764 455555555559999865
Q ss_pred CceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC----CeEEEEEcCCCccccccccceeccCCCCccceeecc
Q 010256 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK----GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 340 (514)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d----g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (514)
+.. .+ ..+.. .+++|+||| ++|++++.+ +.|++||+.+++.. . +..|
T Consensus 143 ~~~-~l--------~~~~~--~~~~~spDG-~~la~~~~~~~~~~~i~~~d~~~g~~~-----~------------l~~~ 193 (582)
T 3o4h_A 143 GLR-EL--------ARLPG--FGFVSDIRG-DLIAGLGFFGGGRVSLFTSNLSSGGLR-----V------------FDSG 193 (582)
T ss_dssp EEE-EE--------EEESS--CEEEEEEET-TEEEEEEEEETTEEEEEEEETTTCCCE-----E------------ECCS
T ss_pred cEE-Ee--------ecCCC--ceEEECCCC-CEEEEEEEcCCCCeEEEEEcCCCCCce-----E------------eecC
Confidence 432 22 12222 789999999 889988777 78999999887641 1 3344
Q ss_pred ccceeEEEEecCCCEEEEEeC-C--eEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe
Q 010256 341 IASISDIKFARNGRHILSRDY-M--TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 417 (514)
Q Consensus 341 ~~~i~~~~~s~~g~~l~~~~~-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 417 (514)
...+..++|||||+.|++++. + .|++||+.+ ++.. .+..+........ ..+....+|+|||.++++++
T Consensus 194 ~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~-~~~~-~~~~~~~~~~~~~-------~~~~~~~~~spdg~~~~~~~ 264 (582)
T 3o4h_A 194 EGSFSSASISPGMKVTAGLETAREARLVTVDPRD-GSVE-DLELPSKDFSSYR-------PTAITWLGYLPDGRLAVVAR 264 (582)
T ss_dssp SCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT-CCEE-ECCCSCSHHHHHC-------CSEEEEEEECTTSCEEEEEE
T ss_pred CCccccceECCCCCEEEEccCCCeeEEEEEcCCC-CcEE-EccCCCcChhhhh-------hccccceeEcCCCcEEEEEE
Confidence 567899999999999997654 6 899999986 5555 5554443221000 00001233999999999999
Q ss_pred CCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCe
Q 010256 418 YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV 464 (514)
Q Consensus 418 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~ 464 (514)
.|+.+++|++ ++.. . .....+..+.++ +++++++++.+.+
T Consensus 265 ~~g~~~l~~~--g~~~-~---~~~~~v~~~~~s-dg~~l~~~s~~~~ 304 (582)
T 3o4h_A 265 REGRSAVFID--GERV-E---APQGNHGRVVLW-RGKLVTSHTSLST 304 (582)
T ss_dssp ETTEEEEEET--TEEE-C---CCSSEEEEEEEE-TTEEEEEEEETTE
T ss_pred cCCcEEEEEE--CCee-c---cCCCceEEEEec-CCEEEEEEcCCCC
Confidence 9999999999 5332 2 344678899999 9999988887754
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-20 Score=174.32 Aligned_cols=233 Identities=13% Similarity=0.076 Sum_probs=159.5
Q ss_pred eEEEEECCCCCEEEE-e-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEe-----------
Q 010256 236 INSISNNSDGETFIS-A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS----------- 302 (514)
Q Consensus 236 v~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~----------- 302 (514)
+..++|+|+++.++. + .++.|.+||+.+++....+ .... ...+...+..++|+|++ +.+++++
T Consensus 36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~-~~~~--~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~ 111 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRI-DLST--PEERVKSLFGAALSPDG-KTLAIYESPVRLELTHFE 111 (337)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEE-ECCB--TTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCEE
T ss_pred ccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeE-EcCC--cccccccccceEECCCC-CEEEEEeccccccccccc
Confidence 567889999987654 4 6899999999866544322 1100 00012256789999999 7777775
Q ss_pred -cCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeee
Q 010256 303 -SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQV 381 (514)
Q Consensus 303 -~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~ 381 (514)
.++.|.+||+.+++.. ..+... ..+.+++|+|+|++|+++ ++.|.+||+.+ ++.+..+..
T Consensus 112 ~~~~~i~v~d~~~~~~~----~~~~~~-------------~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~-~~~~~~~~~ 172 (337)
T 1pby_B 112 VQPTRVALYDAETLSRR----KAFEAP-------------RQITMLAWARDGSKLYGL-GRDLHVMDPEA-GTLVEDKPI 172 (337)
T ss_dssp ECCCEEEEEETTTTEEE----EEEECC-------------SSCCCEEECTTSSCEEEE-SSSEEEEETTT-TEEEEEECS
T ss_pred ccCceEEEEECCCCcEE----EEEeCC-------------CCcceeEECCCCCEEEEe-CCeEEEEECCC-CcEeeeeec
Confidence 5799999999887642 222221 357789999999988887 67899999986 666555543
Q ss_pred ccccccccccccccCCccceeeEEEcCCCCEEEEEeCC-C-----------------------cEEEEecCCCceeeeee
Q 010256 382 HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-N-----------------------LFRVFGCSEGSAESTTL 437 (514)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-g-----------------------~i~iwd~~~~~~~~~~~ 437 (514)
+.... .+.|+|||++|+..+.+ + .|.+||+.+++.....+
T Consensus 173 ~~~~~----------------~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~ 236 (337)
T 1pby_B 173 QSWEA----------------ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV 236 (337)
T ss_dssp TTTTT----------------TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE
T ss_pred cccCC----------------CceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeec
Confidence 33111 34678888866544432 2 46899999876544455
Q ss_pred cCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 438 EASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 438 ~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
..+...+..++++|++++++++ ++.|.+++..... .. ..+.....+.+++|+||+++|++++ ++.+.+|.
T Consensus 237 ~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~---~~-~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d 307 (337)
T 1pby_B 237 RIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNA---SI-KRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYD 307 (337)
T ss_dssp EECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTE---EE-EEEECSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred CCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCc---Cc-ceecCCCceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence 5666778889999999999888 7888884432211 00 1122345678999999999888776 56788886
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-19 Score=167.04 Aligned_cols=234 Identities=10% Similarity=0.038 Sum_probs=154.7
Q ss_pred eEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcc--cccCCceEEEEEecCCCcEEEEEe--cCCeEEE
Q 010256 236 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANM--EDLTEVITSAEFHPTHCNMLAYSS--SKGSIRL 309 (514)
Q Consensus 236 v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~i~~v~~~p~~~~~l~~~~--~dg~i~~ 309 (514)
+..++|+|+++.++.+ .++.|.+||.++++....+ ....... ......+.+++|+|++ +.+++++ .++.|.+
T Consensus 91 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~i~~ 168 (353)
T 3vgz_A 91 PFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRL-VLDDRKRTEEVRPLQPRELVADDAT-NTVYISGIGKESVIWV 168 (353)
T ss_dssp CCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE-ESCCCCCCSSCCCCEEEEEEEETTT-TEEEEEEESSSCEEEE
T ss_pred cceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEE-ecCCCccccccCCCCCceEEECCCC-CEEEEEecCCCceEEE
Confidence 4567899999866554 6899999999876544322 1100000 0011237889999999 6555555 4789999
Q ss_pred EEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccc
Q 010256 310 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPK 388 (514)
Q Consensus 310 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~ 388 (514)
||+.+++.. ..+.. +...+.+++|+|+|+++++++. +.|.+||..+ ++.+..+.......
T Consensus 169 ~d~~~~~~~----~~~~~------------~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~-- 229 (353)
T 3vgz_A 169 VDGGNIKLK----TAIQN------------TGKMSTGLALDSEGKRLYTTNADGELITIDTAD-NKILSRKKLLDDGK-- 229 (353)
T ss_dssp EETTTTEEE----EEECC------------CCTTCCCCEEETTTTEEEEECTTSEEEEEETTT-TEEEEEEECCCSSS--
T ss_pred EcCCCCceE----EEecC------------CCCccceEEECCCCCEEEEEcCCCeEEEEECCC-CeEEEEEEcCCCCC--
Confidence 999887653 22221 1234778999999999888765 9999999987 66666655422100
Q ss_pred cccccccCCccceeeEEEcCCCCEEEEEeC-CCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCce-eecCCCCeEE
Q 010256 389 LCDLYENDSIFDKFECCLSGDGGRVATGSY-SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSR-PLGSLSGVVR 466 (514)
Q Consensus 389 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~s~d~~v~ 466 (514)
...+..++|+|+|++|+.++. ++.|.+||+.+++.. ..+.... ...++++|+++++ ++...++.|.
T Consensus 230 ---------~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~-~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~ 297 (353)
T 3vgz_A 230 ---------EHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNIL-AKVAAPE--SLAVLFNPARNEAYVTHRQAGKVS 297 (353)
T ss_dssp ---------CCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEE-EEEECSS--CCCEEEETTTTEEEEEETTTTEEE
T ss_pred ---------CcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE-EEEEcCC--CceEEECCCCCEEEEEECCCCeEE
Confidence 001237999999998776654 599999999887543 3444332 2568999999955 5555789999
Q ss_pred EeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEec
Q 010256 467 RVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS 506 (514)
Q Consensus 467 i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~ 506 (514)
+++..... .. ..+.....+..++|+||+++|+++..
T Consensus 298 ~~d~~~~~---~~-~~~~~~~~~~~~~~s~dg~~l~v~~~ 333 (353)
T 3vgz_A 298 VIDAKSYK---VV-KTFDTPTHPNSLALSADGKTLYVSVK 333 (353)
T ss_dssp EEETTTTE---EE-EEEECCSEEEEEEECTTSCEEEEEEE
T ss_pred EEECCCCe---EE-EEEecCCCCCeEEEcCCCCEEEEEEc
Confidence 95432211 11 11223457899999999998876653
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.6e-19 Score=163.01 Aligned_cols=214 Identities=9% Similarity=0.090 Sum_probs=134.7
Q ss_pred cCeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCC----CcccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010256 234 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKP----ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 307 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i 307 (514)
..+..++|+|++++|+++ .++.|.+|++........+..... .........+.+++|+|++ +++++...++.|
T Consensus 86 ~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg-~l~v~~~~~~~v 164 (347)
T 3hfq_A 86 TPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN-RLAVIDLGSDKV 164 (347)
T ss_dssp CCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTS-CEEEEETTTTEE
T ss_pred CCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCC-cEEEEeCCCCEE
Confidence 456789999999987776 689999999964333222111000 0001123458899999999 677777778999
Q ss_pred EEEEcC-CCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE-eC-CeEEEEEccCCCCceeeeeeccc
Q 010256 308 RLIDMR-QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DY-MTLKLWDINMDSGPVATFQVHEH 384 (514)
Q Consensus 308 ~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~-~~i~iwd~~~~~~~~~~~~~~~~ 384 (514)
.+||+. ++.... ...+... ....+..++|+|||+++++. .. +.|.+|++......+........
T Consensus 165 ~~~~~~~~g~~~~--~~~~~~~-----------~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~ 231 (347)
T 3hfq_A 165 YVYNVSDAGQLSE--QSVLTME-----------AGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKT 231 (347)
T ss_dssp EEEEECTTSCEEE--EEEEECC-----------TTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES
T ss_pred EEEEECCCCcEEE--eeeEEcC-----------CCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeee
Confidence 999998 443210 1111111 11256789999999977764 33 89999998842122211111000
Q ss_pred cccccccccccCCccceeeEEEcCCCCEEE-EEeCCCcEEEEecCCCc--eeeeeecCCCcceeEEEECCCCCceeecCC
Q 010256 385 LRPKLCDLYENDSIFDKFECCLSGDGGRVA-TGSYSNLFRVFGCSEGS--AESTTLEASKNPMRRQVQTPSRPSRPLGSL 461 (514)
Q Consensus 385 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~ 461 (514)
.... + .....+..++|+|||++|+ +...++.|.+|++.... .....+..+...+..++|+|++++|++++.
T Consensus 232 ~~~~----~--~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 305 (347)
T 3hfq_A 232 IPAD----Y--TAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQ 305 (347)
T ss_dssp SCTT----C--CSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEET
T ss_pred cCCC----C--CCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEc
Confidence 0000 0 0001134799999999874 55678999999997322 223455566667889999999998877765
Q ss_pred -CCeEEE
Q 010256 462 -SGVVRR 467 (514)
Q Consensus 462 -d~~v~i 467 (514)
++.+.+
T Consensus 306 ~~~~v~v 312 (347)
T 3hfq_A 306 NTDNATL 312 (347)
T ss_dssp TTTEEEE
T ss_pred CCCcEEE
Confidence 488888
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-18 Score=177.84 Aligned_cols=326 Identities=9% Similarity=0.059 Sum_probs=190.7
Q ss_pred ceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccccee
Q 010256 37 IISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (514)
Q Consensus 37 ~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 116 (514)
...+++|+|||++|+++ ||.|++||+.+++.. ..+.+|... .......
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~-----------------------~~~~~~~~~-------~~~~~~~ 65 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSS-----------------------VFLENSTFD-------EFGHSIN 65 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEE-----------------------EEECTTTTT-------TCCSCCC
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceE-----------------------EEEechhhh-------hhccccc
Confidence 46689999999999986 899999999887632 334444310 0001234
Q ss_pred EEEEeeCCCCcEEEEeeCC---------CeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccc
Q 010256 117 KIRWCQSANSALYLLSTND---------KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (514)
Q Consensus 117 ~i~~~~~~~~~~l~s~~~d---------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 187 (514)
.+.| ++||++|+.++.+ +.+.+||+.+++...
T Consensus 66 ~~~~--Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~------------------------------------- 106 (740)
T 4a5s_A 66 DYSI--SPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT------------------------------------- 106 (740)
T ss_dssp EEEE--CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-------------------------------------
T ss_pred ceEE--CCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-------------------------------------
Confidence 5778 6788899988876 455688887775321
Q ss_pred cccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCce
Q 010256 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQS 267 (514)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~ 267 (514)
+..|...+...+|||||+.|+.+.++.|++|++.++...
T Consensus 107 -----------------------------------------l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~ 145 (740)
T 4a5s_A 107 -----------------------------------------EERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSY 145 (740)
T ss_dssp -----------------------------------------SSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCE
T ss_pred -----------------------------------------cccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceE
Confidence 123445688999999999999998899999999865432
Q ss_pred eeeeccCCCcccccCCce-----------------EEEEEecCCCcEEEEEecCCe-E----------------------
Q 010256 268 FNIVDVKPANMEDLTEVI-----------------TSAEFHPTHCNMLAYSSSKGS-I---------------------- 307 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i-----------------~~v~~~p~~~~~l~~~~~dg~-i---------------------- 307 (514)
++ +..++...+ ..+.|+||| +.|+.++.|.. +
T Consensus 146 -~l------t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~ 217 (740)
T 4a5s_A 146 -RI------TWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVP 217 (740)
T ss_dssp -EC------CSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEE
T ss_pred -EE------cCCCCccceecCcccccccchhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcceeec
Confidence 22 222222222 358999999 78887764332 4
Q ss_pred -------------EEEEcCC---CccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe----C-CeEEE
Q 010256 308 -------------RLIDMRQ---SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----Y-MTLKL 366 (514)
Q Consensus 308 -------------~~wd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~----~-~~i~i 366 (514)
++||+.+ ++... ...+... ..+.+|...+..++|+|||+.++... + ..|.+
T Consensus 218 yp~~G~~~~~~~l~v~d~~~~~~~~~~~--~~~l~~~------~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~ 289 (740)
T 4a5s_A 218 YPKAGAVNPTVKFFVVNTDSLSSVTNAT--SIQITAP------ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDI 289 (740)
T ss_dssp CCBTTSCCCEEEEEEEETTSCCSSSCCC--EEEECCC------HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEE
T ss_pred CCCCcCcCCeeEEEEEECCCCCCCCcce--EEEecCC------ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEE
Confidence 4444444 31000 0000000 00113566799999999999776531 2 47999
Q ss_pred EEccCCCC----c--eeee--eeccccccccccccccCCccceeeEEEcCCCCEEE-EEeC-C--CcEEEEecCCCceee
Q 010256 367 WDINMDSG----P--VATF--QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA-TGSY-S--NLFRVFGCSEGSAES 434 (514)
Q Consensus 367 wd~~~~~~----~--~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~-d--g~i~iwd~~~~~~~~ 434 (514)
||+.+ ++ + +..+ ..+...+.. .....++|+|||+.|+ ..+. + ..|++||+.++...
T Consensus 290 ~d~~t-g~~~~~~~~~~~l~~~~~~~~v~~----------~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~- 357 (740)
T 4a5s_A 290 CDYDE-SSGRWNCLVARQHIEMSTTGWVGR----------FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT- 357 (740)
T ss_dssp EEEET-TTTEEEECGGGCEEEECSSSCSSS----------SSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-
T ss_pred EECCC-CccccceeEEEEeeeccCCceEcc----------CcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-
Confidence 99987 55 1 2222 223322110 0011678999999877 6653 3 46888898865332
Q ss_pred eeecCCCcceeEEEECCCCCce-eecCC----C--CeEEEee--CCCCCccccCCcccccccceEEEEEcCCCCEEEEEe
Q 010256 435 TTLEASKNPMRRQVQTPSRPSR-PLGSL----S--GVVRRVK--GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 505 (514)
Q Consensus 435 ~~~~~~~~~v~~~~~~~~~~~l-~s~s~----d--~~v~i~~--~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~ 505 (514)
.+......+..+.. ++++.| .+++. . ..+..++ +.... ..+..........+..+.||||+++++...
T Consensus 358 -~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~-~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~ 434 (740)
T 4a5s_A 358 -FITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKV-TCLSCELNPERCQYYSVSFSKEAKYYQLRC 434 (740)
T ss_dssp -ESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEE-EESSTTTSTTTBCBEEEEECTTSSEEEEEE
T ss_pred -ecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcc-eeeccccCCCCCceEEEEECCCCCEEEEEe
Confidence 33333444444432 335544 44433 1 2343322 11110 001100011235788999999999888554
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.85 E-value=7.9e-20 Score=181.97 Aligned_cols=259 Identities=9% Similarity=0.020 Sum_probs=177.8
Q ss_pred cceeEEEEeeCCCCcEEEEeeC-CCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 113 EKINKIRWCQSANSALYLLSTN-DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
.+|.+++|+ +||++|++++. ||+++||++.+++...+.
T Consensus 22 ~~~~~~~~~--~DG~~la~~s~~~g~~~lw~~~~g~~~~lt--------------------------------------- 60 (582)
T 3o4h_A 22 VEKYSLQGV--VDGDKLLVVGFSEGSVNAYLYDGGETVKLN--------------------------------------- 60 (582)
T ss_dssp SCEEEEEEE--ETTTEEEEEEEETTEEEEEEEETTEEEECC---------------------------------------
T ss_pred cchheeecC--CCCCeEEEEEccCCceeEEEEcCCCcEeee---------------------------------------
Confidence 569999994 57889998876 999999998665532211
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-c---CCeEEEEeccC--CC
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D---DLRINLWNLEI--SN 265 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~---d~~i~iwd~~~--~~ 265 (514)
..+...+..++|+|| ++++++ . +...++|.+.. ..
T Consensus 61 --------------------------------------~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g 101 (582)
T 3o4h_A 61 --------------------------------------REPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPG 101 (582)
T ss_dssp --------------------------------------SSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTT
T ss_pred --------------------------------------cccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCC
Confidence 122245778899999 666665 3 45566766543 22
Q ss_pred ceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecccccee
Q 010256 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (514)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 345 (514)
....+ .. ...+...+|+|++...+++.+.++.+.+||+.+++.. .+ ..+.. .
T Consensus 102 ~~~~l--------~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~-----~l------------~~~~~--~ 153 (582)
T 3o4h_A 102 EEQRL--------EA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR-----EL------------ARLPG--F 153 (582)
T ss_dssp CCEEC--------TT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEE-----EE------------EEESS--C
T ss_pred ccccc--------cC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEE-----Ee------------ecCCC--c
Confidence 22221 11 1224466888888544555555555669999887641 11 11112 7
Q ss_pred EEEEecCCCEEEEE-eC----CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCC
Q 010256 346 DIKFARNGRHILSR-DY----MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 420 (514)
Q Consensus 346 ~~~~s~~g~~l~~~-~~----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 420 (514)
+++|||||++|+++ .+ ..|++||+.+ ++. ..+..+... +..++|||||++|+++..++
T Consensus 154 ~~~~spDG~~la~~~~~~~~~~~i~~~d~~~-g~~-~~l~~~~~~---------------~~~~~~SpDG~~l~~~~~~~ 216 (582)
T 3o4h_A 154 GFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS-GGL-RVFDSGEGS---------------FSSASISPGMKVTAGLETAR 216 (582)
T ss_dssp EEEEEEETTEEEEEEEEETTEEEEEEEETTT-CCC-EEECCSSCE---------------EEEEEECTTSCEEEEEECSS
T ss_pred eEEECCCCCEEEEEEEcCCCCeEEEEEcCCC-CCc-eEeecCCCc---------------cccceECCCCCEEEEccCCC
Confidence 89999999999964 33 6799999885 443 355555433 23899999999999888888
Q ss_pred --cEEEEecCCCceeeeeecCCCcceeEEE--------ECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceE
Q 010256 421 --LFRVFGCSEGSAESTTLEASKNPMRRQV--------QTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLL 490 (514)
Q Consensus 421 --~i~iwd~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~ 490 (514)
.|++||+.+++.. .+..|...+..+. |+||++++++++.|+.+++..-.+. .. .....|.
T Consensus 217 ~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~g~~----~~----~~~~~v~ 286 (582)
T 3o4h_A 217 EARLVTVDPRDGSVE--DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFIDGER----VE----APQGNHG 286 (582)
T ss_dssp CEEEEEECTTTCCEE--ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEETTEE----EC----CCSSEEE
T ss_pred eeEEEEEcCCCCcEE--EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEECCe----ec----cCCCceE
Confidence 8999999987544 6777877777777 9999999999999999999332111 11 2346789
Q ss_pred EEEEcCCCCEEEEEecC
Q 010256 491 HLAWHPSENSIACAASN 507 (514)
Q Consensus 491 ~~~~spd~~~l~~~~~~ 507 (514)
+++|+ |++++++++.+
T Consensus 287 ~~~~s-dg~~l~~~s~~ 302 (582)
T 3o4h_A 287 RVVLW-RGKLVTSHTSL 302 (582)
T ss_dssp EEEEE-TTEEEEEEEET
T ss_pred EEEec-CCEEEEEEcCC
Confidence 99999 99998876643
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.2e-18 Score=160.75 Aligned_cols=290 Identities=10% Similarity=0.073 Sum_probs=171.4
Q ss_pred cccceEEEEEcCCCCeEEEecCC----CeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccc
Q 010256 34 EVDIISAIEFDKSGDHLATGDRG----GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (514)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (514)
+...+..++|+|||++|++++.+ +.|.+|++..... ....+.....+.
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g-------------------~~~~~~~~~~~~--------- 99 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG-------------------TLHLLNTQKTMG--------- 99 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT-------------------EEEEEEEEECSS---------
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC-------------------cEEEeeEeccCC---------
Confidence 67788899999999999998875 7999999875310 011222333233
Q ss_pred ccccceeEEEEeeCCCCcEEEEee-CCCeEEEEEcCccEEE-EEeeccCCCccccCCcceecccccCCceeeccCCCccc
Q 010256 110 EIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQEKKVK-KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~-~d~~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 187 (514)
.....+++ +++++++++ .++.|.+|++...... ..... ....+..
T Consensus 100 ---~~p~~~~~----dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~------------------------~~~~g~~-- 146 (361)
T 3scy_A 100 ---ADPCYLTT----NGKNIVTANYSGGSITVFPIGQDGALLPASDV------------------------IEFKGSG-- 146 (361)
T ss_dssp ---SCEEEEEE----CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEE------------------------EECCCCC--
T ss_pred ---CCcEEEEE----CCCEEEEEECCCCEEEEEEeCCCCcCccccee------------------------EEccCCC--
Confidence 34566666 556777665 6889999998743211 00000 0000000
Q ss_pred cccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCeEEEEeccCCC
Q 010256 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISN 265 (514)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~ 265 (514)
... ...+...+.+++|+|+|++++++ .++.|.+|++....
T Consensus 147 ----------------------------------~~~----~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~ 188 (361)
T 3scy_A 147 ----------------------------------PDK----ERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNA 188 (361)
T ss_dssp ----------------------------------SCT----TTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTC
T ss_pred ----------------------------------CCc----cccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCC
Confidence 000 01233457889999999976655 68999999987544
Q ss_pred c----e-eeeeccCCCcccccCCceEEEEEecCCCcEEEEEe-cCCeEEEEEcCCCccccccccceeccCCCCccceeec
Q 010256 266 Q----S-FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 339 (514)
Q Consensus 266 ~----~-~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (514)
. . +................+..++|+|++ +++++++ .++.|.+||+.++.... ...+.. ...
T Consensus 189 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~~~--~~~~~~---------~~~ 256 (361)
T 3scy_A 189 NADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDG-KFAYLINEIGGTVIAFRYADGMLDE--IQTVAA---------DTV 256 (361)
T ss_dssp CTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTCEEEEEEEETTEEEE--EEEEES---------CSS
T ss_pred CcccccceeecccccceecCCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEEecCCceEE--eEEEec---------CCC
Confidence 2 1 100000000111234567899999999 6666666 68999999998764311 111111 111
Q ss_pred cccceeEEEEecCCCEEEEE-e--CCeEEEEEccCC-CC--ceeeeeeccccccccccccccCCccceeeEEEcCCCCEE
Q 010256 340 IIASISDIKFARNGRHILSR-D--YMTLKLWDINMD-SG--PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 413 (514)
Q Consensus 340 ~~~~i~~~~~s~~g~~l~~~-~--~~~i~iwd~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 413 (514)
+......++|+|||++|+++ . ++.|.+|++... ++ .+..+.. ... +..++|+|||++|
T Consensus 257 ~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~---------------~~~~~~spdg~~l 320 (361)
T 3scy_A 257 NAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIH---------------PRNFIITPNGKYL 320 (361)
T ss_dssp CCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSC---------------CCEEEECTTSCEE
T ss_pred CCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCC---------------CceEEECCCCCEE
Confidence 22346799999999988764 3 379999999631 33 2222222 111 1279999999998
Q ss_pred EEEe-CCCcEEEEec--CCCceeeeeecCCCcceeEEEEC
Q 010256 414 ATGS-YSNLFRVFGC--SEGSAESTTLEASKNPMRRQVQT 450 (514)
Q Consensus 414 ~s~~-~dg~i~iwd~--~~~~~~~~~~~~~~~~v~~~~~~ 450 (514)
++++ .++.|.+|++ .+++.....-..+...+.++.|.
T Consensus 321 ~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 321 LVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 8877 6789999655 45532211112233455566653
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.9e-19 Score=165.11 Aligned_cols=254 Identities=8% Similarity=0.045 Sum_probs=168.0
Q ss_pred EEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEE
Q 010256 40 AIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (514)
Q Consensus 40 ~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~ 119 (514)
.+++++++.++++++.++.|.+||..+++. ...+..+. ...+..++
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~-----------------------~~~~~~~~-----------~~~~~~~~ 49 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTV-----------------------YKSCVMPD-----------KFGPGTAM 49 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEE-----------------------EEEEECSS-----------CCSSCEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcE-----------------------EEEEecCC-----------CCCCceeE
Confidence 457888999999999999999999887653 22332221 02477889
Q ss_pred EeeCCCCcEEE-EeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcc
Q 010256 120 WCQSANSALYL-LSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS 198 (514)
Q Consensus 120 ~~~~~~~~~l~-s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 198 (514)
| ++++++++ +...++.|.+||+.+++..........+
T Consensus 50 ~--s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~---------------------------------------- 87 (349)
T 1jmx_B 50 M--APDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP---------------------------------------- 87 (349)
T ss_dssp E--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCST----------------------------------------
T ss_pred E--CCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccc----------------------------------------
Confidence 9 56776655 4567899999999988755433321000
Q ss_pred cCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cC------------CeEEEEeccCCC
Q 010256 199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD------------LRINLWNLEISN 265 (514)
Q Consensus 199 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d------------~~i~iwd~~~~~ 265 (514)
..+...+.+++|+|+|++|+++ .+ +.|.+||+.+++
T Consensus 88 -------------------------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 136 (349)
T 1jmx_B 88 -------------------------------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL 136 (349)
T ss_dssp -------------------------------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred -------------------------------ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc
Confidence 0001235678899999988887 44 999999998643
Q ss_pred ceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccC--CC------------
Q 010256 266 QSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE--AP------------ 331 (514)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~--~~------------ 331 (514)
....+ ....+...+.+++|+|++ + +++++ +.|.+||+.+++... .+.... .+
T Consensus 137 ~~~~~------~~~~~~~~~~~~~~s~dg-~-l~~~~--~~i~~~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 202 (349)
T 1jmx_B 137 EAKPV------RTFPMPRQVYLMRAADDG-S-LYVAG--PDIYKMDVKTGKYTV----ALPLRNWNRKGYSAPDVLYFWP 202 (349)
T ss_dssp GBCCS------EEEECCSSCCCEEECTTS-C-EEEES--SSEEEECTTTCCEEE----EECSTTCCCTTBCCCBCCCCCC
T ss_pred cccee------eeccCCCcccceeECCCC-c-EEEcc--CcEEEEeCCCCceec----cccccccCCccccCccceeeec
Confidence 22111 111133457889999999 6 44443 349999998876532 111110 00
Q ss_pred --Cc----------------------------------------cceeeccccceeEEEEec-CCCEEEEEeCCeEEEEE
Q 010256 332 --GT----------------------------------------RSFFTEIIASISDIKFAR-NGRHILSRDYMTLKLWD 368 (514)
Q Consensus 332 --~~----------------------------------------~~~~~~~~~~i~~~~~s~-~g~~l~~~~~~~i~iwd 368 (514)
.. ...+..+...+..++|+| +|++++++ ++.|.+||
T Consensus 203 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d 281 (349)
T 1jmx_B 203 HQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYD 281 (349)
T ss_dssp CCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEE
T ss_pred CCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEE
Confidence 00 000001123567888999 99999988 88999999
Q ss_pred ccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCce
Q 010256 369 INMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (514)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 432 (514)
+.+ ++.+..+..... +..++|+|+|++|++++.++.|++||+.+++.
T Consensus 282 ~~~-~~~~~~~~~~~~----------------~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~ 328 (349)
T 1jmx_B 282 LKQ-RKLIKAANLDHT----------------YYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEK 328 (349)
T ss_dssp TTT-TEEEEEEECSSC----------------CCEEEECSSSSCEEEESBSSEEEEEETTTTEE
T ss_pred Ccc-CeEEEEEcCCCC----------------ccceEECCCCCEEEEecCCCeEEEEeccccce
Confidence 987 666666653322 12899999999888888899999999988743
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.6e-18 Score=163.26 Aligned_cols=230 Identities=10% Similarity=0.112 Sum_probs=144.2
Q ss_pred cccccceEEEEEcCCCCeEE----EecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccc
Q 010256 32 VQEVDIISAIEFDKSGDHLA----TGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~----tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (514)
+.|...|++++|+|+|++|| +|+.|+.|+|||+.+..... . ...........+.+|.
T Consensus 89 ~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~-~-----------~~~~~~~~~~~~~~h~------- 149 (434)
T 2oit_A 89 VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEA-K-----------QQKRPFAYHKLLKDAG------- 149 (434)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTT-C-----------SSCCCSEEEECCCSGG-------
T ss_pred ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCC-c-----------CCcceeeeeeccCCCC-------
Confidence 45667899999999999999 88999999999987541000 0 0000011234456676
Q ss_pred ccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccc
Q 010256 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (514)
Q Consensus 108 ~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 187 (514)
..|.+++|+|. ++.+|++++.||+|++||++++.....
T Consensus 150 -----~~V~~v~~~p~-~~~~las~s~Dg~v~iwD~~~~~~~~~------------------------------------ 187 (434)
T 2oit_A 150 -----GMVIDMKWNPT-VPSMVAVCLADGSIAVLQVTETVKVCA------------------------------------ 187 (434)
T ss_dssp -----GSEEEEEECSS-CTTEEEEEETTSCEEEEEESSSEEEEE------------------------------------
T ss_pred -----CceEEEEECCC-CCCEEEEEECCCeEEEEEcCCCcceee------------------------------------
Confidence 88999999653 256999999999999999987642110
Q ss_pred cccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCc
Q 010256 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 266 (514)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~ 266 (514)
..+|...|.+++|+|+|++|++| .||+|++||++ ++.
T Consensus 188 -----------------------------------------~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~ 225 (434)
T 2oit_A 188 -----------------------------------------TLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQE 225 (434)
T ss_dssp -----------------------------------------EECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCE
T ss_pred -----------------------------------------ccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccc
Confidence 13466789999999999999999 99999999998 333
Q ss_pred eeeeeccCCCcccccCCceEEEEEecCCCcEEEE-EecCC------eEEEEEcCCCccccccccceeccCCCCccceeec
Q 010256 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY-SSSKG------SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE 339 (514)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~-~~~dg------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (514)
...+ .........|...+.++.|++++ .++++ .+.+| .+++|+++...... ...+.....+. ..+.+
T Consensus 226 ~~~~-~~~~~~~~~~~~~v~~v~w~~~~-~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~--~~~~~~~~~~~--~~~~~ 299 (434)
T 2oit_A 226 KKVI-PCPPFYESDHPVRVLDVLWIGTY-VFAIVYAAADGTLETSPDVVMALLPKKEEKH--PEIFVNFMEPC--YGSCT 299 (434)
T ss_dssp EEEE-CCCTTCCTTSCEEEEEEEEEETT-EEEEEEEETTCCSSSCCEEEEEECCCTTTCC--CCEEEECCCSS--CCCCS
T ss_pred cccc-cCCcccCCCCceeEEEEEEecCc-eEEEEEccCCCccCCCCceEEEEeccCCCCC--CcceEecccCC--CCCCC
Confidence 2221 11110111234589999999987 55543 33443 38999998653210 11111111110 00011
Q ss_pred cccceeEEEEecCCCEEEEEeC--CeEEEEEcc
Q 010256 340 IIASISDIKFARNGRHILSRDY--MTLKLWDIN 370 (514)
Q Consensus 340 ~~~~i~~~~~s~~g~~l~~~~~--~~i~iwd~~ 370 (514)
...+-..+.+-++.+++++++. ..|.|....
T Consensus 300 ~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 300 ERQHHYYLSYIEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp SSCCCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred CcCcceeeehhccCCEEEEecCCCCceeEEEec
Confidence 1122233444477777776543 667777654
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4e-17 Score=152.21 Aligned_cols=205 Identities=13% Similarity=0.117 Sum_probs=128.1
Q ss_pred CeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeec---c---CCCcccccCCceEEEEEecCCCcEE-EEEecCC
Q 010256 235 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVD---V---KPANMEDLTEVITSAEFHPTHCNML-AYSSSKG 305 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~---~---~~~~~~~~~~~i~~v~~~p~~~~~l-~~~~~dg 305 (514)
....+++ ++++|+++ .++.|.+|++...+....+.. . .+.....+...+.+++|+|++ +++ ++...++
T Consensus 101 ~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~ 177 (361)
T 3scy_A 101 DPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDG-KYLLADDLGTD 177 (361)
T ss_dssp CEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTS-SEEEEEETTTT
T ss_pred CcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCC-CEEEEEeCCCC
Confidence 4556777 77777666 689999999975443221100 0 000111223456889999999 655 4455589
Q ss_pred eEEEEEcCCCcc------cccc--ccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe--CCeEEEEEccCCCCc
Q 010256 306 SIRLIDMRQSAL------CDTH--SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGP 375 (514)
Q Consensus 306 ~i~~wd~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~~~i~iwd~~~~~~~ 375 (514)
.|.+|++..... .... ..... ..+...+..++|+|+|++++++. ++.|.+||+.. ++.
T Consensus 178 ~v~v~~~~~~~~~~~~~~l~~~~~~~~~~-----------~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~-g~~ 245 (361)
T 3scy_A 178 QIHKFNINPNANADNKEKFLTKGTPEAFK-----------VAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD-GML 245 (361)
T ss_dssp EEEEEEECTTCCTTTCCCCEEEEEEEEEE-----------CCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEET-TEE
T ss_pred EEEEEEEcCCCCcccccceeeccccccee-----------cCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC-Cce
Confidence 999999875431 1000 00011 11124578899999999887764 49999999985 432
Q ss_pred --eeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeC--CCcEEEEecC--CCce-eeeeecCCCcceeEEE
Q 010256 376 --VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY--SNLFRVFGCS--EGSA-ESTTLEASKNPMRRQV 448 (514)
Q Consensus 376 --~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~--dg~i~iwd~~--~~~~-~~~~~~~~~~~v~~~~ 448 (514)
+..+...... ......++|+|||++|+++.. ++.|.+|++. ++.. ....+.. ...+..++
T Consensus 246 ~~~~~~~~~~~~------------~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~ 312 (361)
T 3scy_A 246 DEIQTVAADTVN------------AQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFI 312 (361)
T ss_dssp EEEEEEESCSSC------------CCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEE
T ss_pred EEeEEEecCCCC------------CCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEE
Confidence 1222111110 011237999999999876665 4899999996 3332 2233333 45678999
Q ss_pred ECCCCCceeecC-CCCeEEE
Q 010256 449 QTPSRPSRPLGS-LSGVVRR 467 (514)
Q Consensus 449 ~~~~~~~l~s~s-~d~~v~i 467 (514)
|+|++++|++++ .++.+.+
T Consensus 313 ~spdg~~l~~~~~~~~~v~v 332 (361)
T 3scy_A 313 ITPNGKYLLVACRDTNVIQI 332 (361)
T ss_dssp ECTTSCEEEEEETTTTEEEE
T ss_pred ECCCCCEEEEEECCCCCEEE
Confidence 999999887776 6788888
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-19 Score=170.51 Aligned_cols=230 Identities=10% Similarity=0.030 Sum_probs=151.8
Q ss_pred cccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccc
Q 010256 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (514)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (514)
+...++.+++++++.+|++|+.++ ++||+.......... ... + ... ... .....+.+..
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~----~~~-------~-~~~-~~~-------~~~~~~~~~~ 93 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKP----GDD-------P-NKI-VDK-------VQGLLVPMKF 93 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCT----TCC-------T-TCE-EEC-------CCCEEECCSS
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhccc----ccC-------c-ccc-ccc-------CccccccCCC
Confidence 345699999999999999999888 999986432110000 000 0 000 000 0011122237
Q ss_pred ceeEEEEeeCCCCcEEE----EeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 114 KINKIRWCQSANSALYL----LSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 114 ~v~~i~~~~~~~~~~l~----s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
.|.+++| ++++++|+ +++.|+.|++||+.++... ... ..+
T Consensus 94 ~v~~l~~--spdg~~lav~~~sgs~d~~v~iwd~~~~~~~-----~~~------------------------~~~----- 137 (434)
T 2oit_A 94 PIHHLAL--SCDNLTLSACMMSSEYGSIIAFFDVRTFSNE-----AKQ------------------------QKR----- 137 (434)
T ss_dssp CEEEEEE--CTTSCEEEEEEEETTTEEEEEEEEHHHHHCT-----TCS------------------------SCC-----
T ss_pred cccEEEE--cCCCCEEEEEEeccCCCceEEEEEccccccC-----CcC------------------------Ccc-----
Confidence 7999999 56788999 7889999999998764100 000 000
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC-CCEEEEe-cCCeEEEEeccCCCce
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLRINLWNLEISNQS 267 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~ 267 (514)
.+ .... .+.+|...|.+++|+|+ +.+|+++ .||+|++||+++....
T Consensus 138 ----------------~~---------------~~~~-~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~ 185 (434)
T 2oit_A 138 ----------------PF---------------AYHK-LLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV 185 (434)
T ss_dssp ----------------CS---------------EEEE-CCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE
T ss_pred ----------------ee---------------eeee-ccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce
Confidence 00 0001 13678899999999998 8899998 9999999999866332
Q ss_pred eeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEE
Q 010256 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 347 (514)
. ...+|...|.+++|+|+| ++|++|+.||.|++||++ ++. ...+..+.. ....|...+.++
T Consensus 186 ~--------~~~~~~~~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~~----~~~~~~~~~-----~~~~~~~~v~~v 246 (434)
T 2oit_A 186 C--------ATLPSTVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQE----KKVIPCPPF-----YESDHPVRVLDV 246 (434)
T ss_dssp E--------EEECGGGCEEEEEECTTS-SCEEEEETTSCEEEECTT-CCE----EEEECCCTT-----CCTTSCEEEEEE
T ss_pred e--------eccCCCCceeEEEEcCCC-CEEEEEcCCCcEEEEccC-Ccc----cccccCCcc-----cCCCCceeEEEE
Confidence 2 234578899999999998 899999999999999998 332 122222110 011234579999
Q ss_pred EEecCCCEEEEEe--CC------eEEEEEccC
Q 010256 348 KFARNGRHILSRD--YM------TLKLWDINM 371 (514)
Q Consensus 348 ~~s~~g~~l~~~~--~~------~i~iwd~~~ 371 (514)
+|++++.++++.+ +| .+++|++..
T Consensus 247 ~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 247 LWIGTYVFAIVYAAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp EEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred EEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence 9999998887632 22 489999985
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-17 Score=154.90 Aligned_cols=259 Identities=9% Similarity=-0.003 Sum_probs=161.9
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcC-ccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQ-EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
..+..++| +++|++|++++.+ .|.+|++. +++.......... +. +..++++|+|+.+.+
T Consensus 40 ~~~~~~a~--spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-------g~-------~~~~~~spdg~~l~~--- 99 (365)
T 1jof_A 40 EPISWMTF--DHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-------GH-------PRANDADTNTRAIFL--- 99 (365)
T ss_dssp CCCSEEEE--CTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-------SS-------GGGGCTTSCCEEEEE---
T ss_pred CCCcEEEE--CCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-------CC-------CccEEECCCCCEEEE---
Confidence 35788999 6788889988887 99999997 7766543332110 11 126789999984200
Q ss_pred CCCCCcccCCC-------------CCCcEEeceeec-cccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCe
Q 010256 192 CASNDSSFPPG-------------GVSSLRLPVVVT-SQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLR 255 (514)
Q Consensus 192 ~~~~~~~~~~~-------------~~~~i~i~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~ 255 (514)
+++. .++.+.+|+ +. ..+. ......+...+...+.+++|+|+|++|+++ .++.
T Consensus 100 -------~~~~~~~~~~~~~~~~~~~g~v~v~~-~~~~g~~---~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~ 168 (365)
T 1jof_A 100 -------LAAKQPPYAVYANPFYKFAGYGNVFS-VSETGKL---EKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANK 168 (365)
T ss_dssp -------EECSSTTCCEEEEEESSSCCEEEEEE-ECTTCCE---EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTE
T ss_pred -------EEecCCcceeccceeecCCceEEEEc-cCCCCcC---cceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCE
Confidence 3333 678899998 33 2111 111111111245678999999999988876 4789
Q ss_pred EEEEecc-CCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEec-CCeEEEEEcC--CCcccc--ccccceeccC
Q 010256 256 INLWNLE-ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIRLIDMR--QSALCD--THSKLFEEQE 329 (514)
Q Consensus 256 i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~-dg~i~~wd~~--~~~~~~--~~~~~~~~~~ 329 (514)
|++|+++ +++.. .+... ....+...+..++|+|+| +++++++. ++.|.+|++. +++... ..+..+...
T Consensus 169 v~~~~~~~~g~~~-~~~~~---~~~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~- 242 (365)
T 1jof_A 169 LWTHRKLASGEVE-LVGSV---DAPDPGDHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG- 242 (365)
T ss_dssp EEEEEECTTSCEE-EEEEE---ECSSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT-
T ss_pred EEEEEECCCCCEE-EeeeE---ecCCCCCCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCC-
Confidence 9999997 44322 11000 111235668999999999 67776664 7899999875 343210 001111100
Q ss_pred CCCccceeecccc------ceeEEE-EecCCCEEEEEe--CC-----eEEEEEccCCCCceee---eeeccccccccccc
Q 010256 330 APGTRSFFTEIIA------SISDIK-FARNGRHILSRD--YM-----TLKLWDINMDSGPVAT---FQVHEHLRPKLCDL 392 (514)
Q Consensus 330 ~~~~~~~~~~~~~------~i~~~~-~s~~g~~l~~~~--~~-----~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~ 392 (514)
+.+|.. .+..++ |+|||++|++++ .. .|.+|++...++.... ...+...
T Consensus 243 -------~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~------- 308 (365)
T 1jof_A 243 -------IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSG------- 308 (365)
T ss_dssp -------CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCC-------
T ss_pred -------cCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCC-------
Confidence 112222 578899 999999988753 23 8999999632443321 2112111
Q ss_pred cccCCccceeeEEEcC---CCCEEEEEeC-CCcEEEEecCCC
Q 010256 393 YENDSIFDKFECCLSG---DGGRVATGSY-SNLFRVFGCSEG 430 (514)
Q Consensus 393 ~~~~~~~~v~~~~~s~---~~~~l~s~~~-dg~i~iwd~~~~ 430 (514)
...++|+| ||++|++++. ++.|.+|++...
T Consensus 309 --------~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 309 --------GHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp --------TTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred --------cccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 11788999 8999998876 489999998754
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.81 E-value=4e-18 Score=160.79 Aligned_cols=292 Identities=10% Similarity=0.087 Sum_probs=170.2
Q ss_pred EEEcCCCCeEEEecC-CC--eEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeE
Q 010256 41 IEFDKSGDHLATGDR-GG--RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 117 (514)
Q Consensus 41 ~~~s~~g~~l~tg~~-dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~ 117 (514)
.+|||||++|++++. +| .|.+||+.+++.. ....++. ..+..
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~-----------------------~lt~~~~------------~~~~~ 85 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVAT-----------------------QLTEGRG------------DNTFG 85 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEE-----------------------ECCCSSC------------BCSSS
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceE-----------------------EeeeCCC------------CCccc
Confidence 889999999999887 67 4788887766531 2223333 33445
Q ss_pred EEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCc
Q 010256 118 IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS 197 (514)
Q Consensus 118 i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 197 (514)
+.| +++|+.|+.++.++.|++||+.+++...+...+.. .+. .....++++++.+
T Consensus 86 ~~~--spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~--------~~~-----~~~~~~~~dg~~l----------- 139 (388)
T 3pe7_A 86 GFL--SPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAE--------WVG-----YGTWVANSDCTKL----------- 139 (388)
T ss_dssp CEE--CTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT--------EEE-----EEEEEECTTSSEE-----------
T ss_pred eEE--cCCCCEEEEEeCCCeEEEEECCCCcceeeeechhh--------ccc-----ccceeECCCCCee-----------
Confidence 678 67888999999999999999999876555443310 000 0011123444432
Q ss_pred ccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCE-----EEEe-cCCeEEEEeccCCCceeeee
Q 010256 198 SFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET-----FISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 198 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-----l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
+. +. ....+ +.+.... +... .+..|.+||+.+++..
T Consensus 140 -~~------~~----~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~---- 181 (388)
T 3pe7_A 140 -VG------IE----IRRED-----------------------WVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST---- 181 (388)
T ss_dssp -EE------EE----EEGGG-----------------------CCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE----
T ss_pred -cc------cc----ccCcc-----------------------cccccccchhhhhhccCCcceEEEEECCCCceE----
Confidence 10 00 00000 0000000 0012 3478999999865432
Q ss_pred ccCCCcccccCCceEEEEEec-CCCcEEEEEecC------CeEEEEEcCCCccccccccceeccCCCCccceeeccccce
Q 010256 272 DVKPANMEDLTEVITSAEFHP-THCNMLAYSSSK------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p-~~~~~l~~~~~d------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 344 (514)
.+..+...+..++|+| ++ ..|+....+ ..|.++|+..+.. +.+.... ....+
T Consensus 182 -----~l~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~-----~~l~~~~----------~~~~~ 240 (388)
T 3pe7_A 182 -----VILQENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTNM-----RKVKTHA----------EGESC 240 (388)
T ss_dssp -----EEEEESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCCC-----EESCCCC----------TTEEE
T ss_pred -----EeecCCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCce-----EEeeeCC----------CCccc
Confidence 2233566789999999 98 777776653 3677788765432 1111110 00247
Q ss_pred eEEEEecCCCEEEEEe--C-C---eEEEEEccCCCCcee--eeeeccccccccccccccCCccceeeEEEcCCCCEEEEE
Q 010256 345 SDIKFARNGRHILSRD--Y-M---TLKLWDINMDSGPVA--TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 416 (514)
Q Consensus 345 ~~~~~s~~g~~l~~~~--~-~---~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 416 (514)
..++|+|||+.|+..+ + . .|.+||+.+ ++... .+..+..... ....++|+|||+.|+..
T Consensus 241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-g~~~~l~~~~~~~~~~~------------~~~~~~~spdg~~l~~~ 307 (388)
T 3pe7_A 241 THEFWVPDGSALVYVSYLKGSPDRFIYSADPET-LENRQLTSMPACSHLMS------------NYDGSLMVGDGSDAPVD 307 (388)
T ss_dssp EEEEECTTSSCEEEEEEETTCCCEEEEEECTTT-CCEEEEEEECCEEEEEE------------CTTSSEEEEEECCC---
T ss_pred ccceECCCCCEEEEEecCCCCCcceEEEEecCC-CceEEEEcCCCceeeee------------cCCCCeEccCCCcceeE
Confidence 7889999999876532 2 2 399999986 54322 2221100000 00035799999988753
Q ss_pred ---------eCCCcEEEEecCCCceeeeeecCCCc-----------ceeEEEECCCCCceeecC-CCCeEEE
Q 010256 417 ---------SYSNLFRVFGCSEGSAESTTLEASKN-----------PMRRQVQTPSRPSRPLGS-LSGVVRR 467 (514)
Q Consensus 417 ---------~~dg~i~iwd~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~s~s-~d~~v~i 467 (514)
..+..|++||+.+++. ..+..+.. .+..++|+||++.|+..+ .++...+
T Consensus 308 ~~~~~~~~~~~~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l 377 (388)
T 3pe7_A 308 VQDDSGYKIENDPFLYVFNMKNGTQ--HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPAL 377 (388)
T ss_dssp ---------CCCCEEEEEETTTTEE--EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEE
T ss_pred eeeccccccCCCCEEEEEeccCCce--EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeE
Confidence 4567899999987643 34444544 577889999999887665 3454444
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-17 Score=155.05 Aligned_cols=248 Identities=8% Similarity=0.056 Sum_probs=143.2
Q ss_pred eEEEEECCCCCEEE-Ee-cCCeEEEEeccCCCceeeeeccCCCccccc----CCceEEEEEecCCCcEEEEEecC-----
Q 010256 236 INSISNNSDGETFI-SA-DDLRINLWNLEISNQSFNIVDVKPANMEDL----TEVITSAEFHPTHCNMLAYSSSK----- 304 (514)
Q Consensus 236 v~~~~~~~~~~~l~-s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~~i~~v~~~p~~~~~l~~~~~d----- 304 (514)
+..++|+|+++.++ ++ .++.|.+||+.+++....+ ..... ...+..++|+|++ +++++++.+
T Consensus 45 ~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~------~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~ 117 (349)
T 1jmx_B 45 PGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA------NLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLN 117 (349)
T ss_dssp SCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE------ESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECS
T ss_pred CceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEE------EcccccccccccccceEECCCC-CEEEEEcccccccc
Confidence 45788999998665 44 7899999999866543322 11110 2236789999999 788877765
Q ss_pred -------CeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCcee
Q 010256 305 -------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVA 377 (514)
Q Consensus 305 -------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~ 377 (514)
+.|.+||+.+++.... ...+.. ...+.+++|+|+|+ ++++ .+.|.+||+.+ ++.+.
T Consensus 118 ~~~~~~~~~i~~~d~~~~~~~~~-~~~~~~-------------~~~~~~~~~s~dg~-l~~~-~~~i~~~d~~~-~~~~~ 180 (349)
T 1jmx_B 118 DHYVVKPPRLEVFSTADGLEAKP-VRTFPM-------------PRQVYLMRAADDGS-LYVA-GPDIYKMDVKT-GKYTV 180 (349)
T ss_dssp SCEEECCCEEEEEEGGGGGGBCC-SEEEEC-------------CSSCCCEEECTTSC-EEEE-SSSEEEECTTT-CCEEE
T ss_pred cccccCCCeEEEEECCCccccce-eeeccC-------------CCcccceeECCCCc-EEEc-cCcEEEEeCCC-Cceec
Confidence 8999999988653211 122221 13578899999999 5554 33599999987 66666
Q ss_pred eeeeccccccc-----cccccccCC----ccceeeEEEcCCCCEEEEEeCC-CcEEEEecCCCceeeeeecCCCcceeEE
Q 010256 378 TFQVHEHLRPK-----LCDLYENDS----IFDKFECCLSGDGGRVATGSYS-NLFRVFGCSEGSAESTTLEASKNPMRRQ 447 (514)
Q Consensus 378 ~~~~~~~~~~~-----~~~~~~~~~----~~~v~~~~~s~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~v~~~ 447 (514)
.+..+...... ...++.... ......+++++++......... ..+..++..+++.....+..+...+..+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (349)
T 1jmx_B 181 ALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTG 260 (349)
T ss_dssp EECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEE
T ss_pred cccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceee
Confidence 55433210000 000000000 0011245666554321111111 1122255555433333333455677899
Q ss_pred EECC-CCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 448 VQTP-SRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 448 ~~~~-~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
+++| ++++++++ ++.|.+++..... .. ..+.....+..++|+||+++|++++ ++.+.+|.
T Consensus 261 ~~sp~dg~~l~~~--~~~v~~~d~~~~~---~~-~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d 322 (349)
T 1jmx_B 261 LRSPKDPNQIYGV--LNRLAKYDLKQRK---LI-KAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFN 322 (349)
T ss_dssp EECSSCTTEEEEE--ESEEEEEETTTTE---EE-EEEECSSCCCEEEECSSSSCEEEESBSSEEEEEE
T ss_pred EecCCCCCEEEEE--cCeEEEEECccCe---EE-EEEcCCCCccceEECCCCCEEEEecCCCeEEEEe
Confidence 9999 99999888 8888884432211 10 1112345678999999999888765 56688886
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=9.8e-18 Score=171.37 Aligned_cols=291 Identities=9% Similarity=0.009 Sum_probs=171.6
Q ss_pred ceEEEEEcCCCCeEEEecC---------CCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccc
Q 010256 37 IISAIEFDKSGDHLATGDR---------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (514)
Q Consensus 37 ~V~~~~~s~~g~~l~tg~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (514)
.|.+++|||||++||+++. ++.|++||+.+++.... ..+ .
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~---------------------~~l---~------- 109 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG---------------------NEL---P------- 109 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS---------------------SCC---C-------
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccc---------------------eec---C-------
Confidence 3899999999999999876 68999999987763100 001 1
Q ss_pred ccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccc
Q 010256 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (514)
Q Consensus 108 ~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 187 (514)
..+..++| ++||+.|+.+. ++.|++|++.+++...+.... .. ..+....
T Consensus 110 -----~~~~~~~~--SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~-~~------~~v~~g~---------------- 158 (719)
T 1z68_A 110 -----RPIQYLCW--SPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNG-RE------NKIFNGI---------------- 158 (719)
T ss_dssp -----SSBCCEEE--CSSTTCEEEEE-TTEEEEESSTTSCCEECCCCC-BT------TTEEESS----------------
T ss_pred -----cccccceE--CCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCC-Cc------CCeEccc----------------
Confidence 34788999 67888888875 789999999887644321110 00 0000000
Q ss_pred cccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cC-------------
Q 010256 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD------------- 253 (514)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d------------- 253 (514)
....+...-.....+++|+|||+.|+++ .|
T Consensus 159 ------------------------------------~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~ 202 (719)
T 1z68_A 159 ------------------------------------PDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYG 202 (719)
T ss_dssp ------------------------------------CCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECC
T ss_pred ------------------------------------ccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccC
Confidence 0000000000122456677777776665 32
Q ss_pred ---------------------CeEEEEeccCCCce--eeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC----Ce
Q 010256 254 ---------------------LRINLWNLEISNQS--FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK----GS 306 (514)
Q Consensus 254 ---------------------~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d----g~ 306 (514)
..|++||+.+++.. ..+ ..+..+.++...+.+++|+||+ +++++.... ..
T Consensus 203 ~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~ 279 (719)
T 1z68_A 203 DEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEV--PVPAMIASSDYYFSWLTWVTDE-RVCLQWLKRVQNVSV 279 (719)
T ss_dssp SSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEEC--CCCHHHHTSCEEEEEEEESSSS-EEEEEEEESSTTEEE
T ss_pred CCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEc--cCCccCCCCcceEEEeEEeCCC-eEEEEEeccccCeEE
Confidence 27889999855421 111 1112345678889999999997 777765433 24
Q ss_pred EEEEE----cCCCccccccccceeccCCCCccceeecccccee-----EEEEecCCCEEEE--Ee-CC--eEEEEEccCC
Q 010256 307 IRLID----MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS-----DIKFARNGRHILS--RD-YM--TLKLWDINMD 372 (514)
Q Consensus 307 i~~wd----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~s~~g~~l~~--~~-~~--~i~iwd~~~~ 372 (514)
|.+|| +.+++.. ..+.. ...+|...+. .+.|+|||+.++. .. ++ .|.+||+..
T Consensus 280 l~~~d~~~~~~~g~~~----~~~~~--------~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~- 346 (719)
T 1z68_A 280 LSICDFREDWQTWDCP----KTQEH--------IEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTV- 346 (719)
T ss_dssp EEEEEECSSSSSEECC----GGGEE--------EEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCS-
T ss_pred EEEEcccCCCCCCceE----EEEec--------ccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCC-
Confidence 88899 7666542 22210 0012334455 7899999996654 32 24 566677654
Q ss_pred CCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCC-----CcEEEEecCC--Cceeeeeec----CCC
Q 010256 373 SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-----NLFRVFGCSE--GSAESTTLE----ASK 441 (514)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~--~~~~~~~~~----~~~ 441 (514)
++ ...+..+... +..+.++ +++.|+..+.+ +..++|.+.. +......+. +|.
T Consensus 347 ~~-~~~lt~~~~~---------------v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~ 409 (719)
T 1z68_A 347 EN-AIQITSGKWE---------------AINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKER 409 (719)
T ss_dssp TT-CEECSCSSSC---------------EEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTT
T ss_pred Cc-eEecccCceE---------------EEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCC
Confidence 33 3344332211 2356666 78777766554 7888998764 311112222 366
Q ss_pred cceeEEEECCCCCceee
Q 010256 442 NPMRRQVQTPSRPSRPL 458 (514)
Q Consensus 442 ~~v~~~~~~~~~~~l~s 458 (514)
..+..+.|+|++++++.
T Consensus 410 ~~~~~~~~s~dg~~l~~ 426 (719)
T 1z68_A 410 CQYYTASFSDYAKYYAL 426 (719)
T ss_dssp BCBEEEEECGGGSSEEE
T ss_pred CceEEEEECCCCCEEEE
Confidence 67788999999988764
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=7.5e-17 Score=163.23 Aligned_cols=203 Identities=8% Similarity=0.003 Sum_probs=129.5
Q ss_pred CccCeEEEEECCCCCEEEEe-cC----------CeEEEEeccCC-----CceeeeeccCCCccc-ccCCceEEEEEecCC
Q 010256 232 HDYHINSISNNSDGETFISA-DD----------LRINLWNLEIS-----NQSFNIVDVKPANME-DLTEVITSAEFHPTH 294 (514)
Q Consensus 232 h~~~v~~~~~~~~~~~l~s~-~d----------~~i~iwd~~~~-----~~~~~~~~~~~~~~~-~~~~~i~~v~~~p~~ 294 (514)
|...+.+++|+|||+.|+++ .+ ..|++||+.+. +... .+. .+...+..++|+|||
T Consensus 128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--------~l~~~~~~~~~~~~~SpDG 199 (662)
T 3azo_A 128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR--------ELSDDAHRFVTGPRLSPDG 199 (662)
T ss_dssp TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE--------ESSCSCSSEECCCEECTTS
T ss_pred CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee--------EEEecCCCcccCceECCCC
Confidence 44567889999999999987 55 58999999852 2222 233 445677889999999
Q ss_pred CcEEEEEecC--------CeEEEEEcC-CCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-C--
Q 010256 295 CNMLAYSSSK--------GSIRLIDMR-QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-M-- 362 (514)
Q Consensus 295 ~~~l~~~~~d--------g~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~-- 362 (514)
+.|+.++.+ ..|++||+. ++... . ... ...+|...+..+.|+|||+++++++. +
T Consensus 200 -~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~-~-~~~-----------l~~~~~~~~~~~~~spdg~l~~~~~~~~~~ 265 (662)
T 3azo_A 200 -RQAVWLAWDHPRMPWEGTELKTARVTEDGRFA-D-TRT-----------LLGGPEEAIAQAEWAPDGSLIVATDRTGWW 265 (662)
T ss_dssp -SEEEEEEECTTCCTTTCEEEEEEEECTTSCEE-E-EEE-----------EEEETTBCEEEEEECTTSCEEEEECTTSSC
T ss_pred -CEEEEEECCCCCCCCCCcEEEEEEECCCCccc-c-cEE-----------eCCCCCceEcceEECCCCeEEEEECCCCCe
Confidence 788877755 379999998 45210 0 111 12223467899999999997766654 6
Q ss_pred eEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEE--ecCCCceeeeeecCC
Q 010256 363 TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF--GCSEGSAESTTLEAS 440 (514)
Q Consensus 363 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw--d~~~~~~~~~~~~~~ 440 (514)
.|.+||+.. ++.......+.... .. ....++..++|+|+++++++++. +.++|| |+.++ . ...+..+
T Consensus 266 ~l~~~~~~~-~~~~~l~~~~~~~~----~p---~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~-~-~~~l~~~ 334 (662)
T 3azo_A 266 NLHRVDPAT-GAATQLCRREEEFA----GP---LWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG-E-LVDAAGP 334 (662)
T ss_dssp EEEEECTTT-CCEEESSCCSSBSS----CC---CCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT-E-EEECCSS
T ss_pred EEEEEECCC-Cceeeccccccccc----Cc---cccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC-c-EEEecCC
Confidence 566666644 44333222222110 00 00011237899999999999998 999999 55444 2 4667777
Q ss_pred CcceeEE-EECCCCCceeecCCCCeEEE
Q 010256 441 KNPMRRQ-VQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 441 ~~~v~~~-~~~~~~~~l~s~s~d~~v~i 467 (514)
...+..+ .+.++.-++++++.+....+
T Consensus 335 ~~~~~~~~s~~~~~~~~~~~~~~~~~~i 362 (662)
T 3azo_A 335 WTEWAATLTVSGTRAVGVAASPRTAYEV 362 (662)
T ss_dssp CCEEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred CCeEEEEEecCCCEEEEEEcCCCCCCEE
Confidence 7777766 55444445556666655554
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-15 Score=134.82 Aligned_cols=265 Identities=11% Similarity=0.184 Sum_probs=177.1
Q ss_pred ccccccccchhhccccCcccccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccc
Q 010256 11 AAQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEF 90 (514)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (514)
+.....|.+...|+.+.. ..++-..+.+++++++|+++++...++.|.+|+.....
T Consensus 7 ~~~~~~~~~~~~~g~~g~--~~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~---------------------- 62 (286)
T 1q7f_A 7 QIKRQRMIYHCKFGEFGV--MEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRF---------------------- 62 (286)
T ss_dssp -CCCEEECEEEEECCBSS--STTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCE----------------------
T ss_pred ccccceeEEEEeccCCCC--CCCccCCCceEEECCCCCEEEEECCCCEEEEECCCCcE----------------------
Confidence 344566777777776543 34677889999999999988888889999999975221
Q ss_pred eeeeeec------cCCCccccccccccccceeEEEEeeCCCCcEEEEeeC-CCeEEEEEcCccEEEEEeeccCCCccccC
Q 010256 91 RYKTEFQ------SHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTN-DKTIKLWKVQEKKVKKVFDWNVHPEKAAG 163 (514)
Q Consensus 91 ~~~~~~~------~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
...+. ++. ..+..+++. .+++.++++... ++.|.+|+. +++......
T Consensus 63 --~~~~~~~~~~~~~~------------~~p~~i~~~-~~~g~l~v~~~~~~~~i~~~d~-~g~~~~~~~---------- 116 (286)
T 1q7f_A 63 --KFQFGECGKRDSQL------------LYPNRVAVV-RNSGDIIVTERSPTHQIQIYNQ-YGQFVRKFG---------- 116 (286)
T ss_dssp --EEEECCBSSSTTCB------------SSEEEEEEE-TTTTEEEEEECGGGCEEEEECT-TSCEEEEEC----------
T ss_pred --EEEecccCCCcccc------------cCceEEEEE-cCCCeEEEEcCCCCCEEEEECC-CCcEEEEec----------
Confidence 11111 122 457888884 245555555533 789999984 443221110
Q ss_pred CcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC
Q 010256 164 NGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS 243 (514)
Q Consensus 164 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 243 (514)
..+...+.++++++
T Consensus 117 ------------------------------------------------------------------~~~~~~~~~i~~~~ 130 (286)
T 1q7f_A 117 ------------------------------------------------------------------ATILQHPRGVTVDN 130 (286)
T ss_dssp ------------------------------------------------------------------TTTCSCEEEEEECT
T ss_pred ------------------------------------------------------------------CccCCCceEEEEeC
Confidence 11224567899999
Q ss_pred CCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccc
Q 010256 244 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS 322 (514)
Q Consensus 244 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 322 (514)
+++++++. .++.|.+||.. ++.. ..+ ....+...+..++++|++ +++++...++.|++||... +. +
T Consensus 131 ~g~l~v~~~~~~~i~~~~~~-g~~~-~~~-----~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~g-~~----~ 197 (286)
T 1q7f_A 131 KGRIIVVECKVMRVIIFDQN-GNVL-HKF-----GCSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYEG-QY----L 197 (286)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEE-EEE-----ECTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETTC-CE----E
T ss_pred CCCEEEEECCCCEEEEEcCC-CCEE-EEe-----CCCCccCCcEEEEECCCC-CEEEEECCCCEEEEEcCCC-CE----E
Confidence 99988887 78999999975 3322 221 111234568999999998 7888778899999999754 32 2
Q ss_pred cceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-C-eEEEEEccCCCCceeeeeeccccccccccccccCCccc
Q 010256 323 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-M-TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFD 400 (514)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (514)
..+... ++...+..++++++|+++++... + .|.+||.. ++.+..+..+.... .
T Consensus 198 ~~~~~~----------g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~--g~~~~~~~~~~~~~-------------~ 252 (286)
T 1q7f_A 198 RQIGGE----------GITNYPIGVGINSNGEILIADNHNNFNLTIFTQD--GQLISALESKVKHA-------------Q 252 (286)
T ss_dssp EEESCT----------TTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT--SCEEEEEEESSCCS-------------C
T ss_pred EEEccC----------CccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC--CCEEEEEcccCCCC-------------c
Confidence 222211 11246789999999998888654 4 99999964 66666665543211 1
Q ss_pred eeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 401 KFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 401 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
...++++|+|+++++ +.|++|++|+....
T Consensus 253 ~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 253 CFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred ceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 237999999987777 67899999998643
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-16 Score=162.41 Aligned_cols=204 Identities=11% Similarity=0.057 Sum_probs=124.2
Q ss_pred EEEEECCCCCEEEEe-cC---------CeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCe
Q 010256 237 NSISNNSDGETFISA-DD---------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 306 (514)
Q Consensus 237 ~~~~~~~~~~~l~s~-~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~ 306 (514)
.+++|||||++|+.+ .+ +.+.+||+.+++.. .+..+...+..++||||| +.||.+ .++.
T Consensus 65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~---------~l~~~~~~~~~~~~SPdG-~~la~~-~~~~ 133 (740)
T 4a5s_A 65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI---------TEERIPNNTQWVTWSPVG-HKLAYV-WNND 133 (740)
T ss_dssp CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC---------CSSCCCTTEEEEEECSST-TCEEEE-ETTE
T ss_pred cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE---------EcccCCCcceeeEECCCC-CEEEEE-ECCe
Confidence 468899999999887 54 66789999865432 345567789999999999 778877 5789
Q ss_pred EEEEEcCCCccccccccceeccCCCCccceeeccc---------cceeEEEEecCCCEEEEEe-C-CeEEEEE-------
Q 010256 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII---------ASISDIKFARNGRHILSRD-Y-MTLKLWD------- 368 (514)
Q Consensus 307 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~i~~~~~s~~g~~l~~~~-~-~~i~iwd------- 368 (514)
|++||+.++... ..+..+.. ...+.++. +....+.|||||+.|+..+ + +.+.+|+
T Consensus 134 i~~~~~~~~~~~---~lt~~g~~----~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~ 206 (740)
T 4a5s_A 134 IYVKIEPNLPSY---RITWTGKE----DIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDE 206 (740)
T ss_dssp EEEESSTTSCCE---ECCSCCBT----TTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCST
T ss_pred EEEEECCCCceE---EEcCCCCc----cceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCC
Confidence 999999887642 11111111 11122222 2234589999999999753 2 4444444
Q ss_pred ----------------------------ccC---CCC-ceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEE
Q 010256 369 ----------------------------INM---DSG-PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG 416 (514)
Q Consensus 369 ----------------------------~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 416 (514)
+.+ ... ....+..... + ...-.-+..++|+|||++++..
T Consensus 207 ~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~-------~--~~~~~~~~~~~wspdg~~~~~~ 277 (740)
T 4a5s_A 207 SLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPAS-------M--LIGDHYLCDVTWATQERISLQW 277 (740)
T ss_dssp TCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHH-------H--HTSCEEEEEEEEEETTEEEEEE
T ss_pred CCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCcc-------C--CCCCeEEEEEEEeCCCeEEEEE
Confidence 432 100 1111110000 0 0011124589999999977654
Q ss_pred eC----CCcEEEEecCCCc----eee-eee--cCCCccee-----EEEECCCCCcee-ecC-CCCeEEE
Q 010256 417 SY----SNLFRVFGCSEGS----AES-TTL--EASKNPMR-----RQVQTPSRPSRP-LGS-LSGVVRR 467 (514)
Q Consensus 417 ~~----dg~i~iwd~~~~~----~~~-~~~--~~~~~~v~-----~~~~~~~~~~l~-s~s-~d~~v~i 467 (514)
.. +..|++||+.+++ +.. ..+ ++|...+. ...|+|||+.++ ..+ .+|.-.|
T Consensus 278 ~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l 346 (740)
T 4a5s_A 278 LRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHI 346 (740)
T ss_dssp EESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEE
T ss_pred eCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEE
Confidence 32 3479999999886 221 222 55665554 788999999876 554 4454444
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-16 Score=150.33 Aligned_cols=221 Identities=8% Similarity=0.045 Sum_probs=134.5
Q ss_pred EEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEE--EEecCCCcEEEEE-------------
Q 010256 238 SISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSA--EFHPTHCNMLAYS------------- 301 (514)
Q Consensus 238 ~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v--~~~p~~~~~l~~~------------- 301 (514)
.++|+||++.|+.+ .++.|++||+.+++... + ...+...+... .++|++ .+++..
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~-~-------~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~~~ 155 (388)
T 3pe7_A 85 GGFLSPDDDALFYVKDGRNLMRVDLATLEENV-V-------YQVPAEWVGYGTWVANSDC-TKLVGIEIRREDWVPLTDW 155 (388)
T ss_dssp SCEECTTSSEEEEEETTTEEEEEETTTCCEEE-E-------EECCTTEEEEEEEEECTTS-SEEEEEEEEGGGCCCCCSH
T ss_pred ceEEcCCCCEEEEEeCCCeEEEEECCCCccee-e-------eechhhcccccceeECCCC-CeeccccccCccccccccc
Confidence 45799999999998 78899999998765432 2 12233334333 348888 666632
Q ss_pred ---------ecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec-CCCEEEEEeC-------CeE
Q 010256 302 ---------SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY-------MTL 364 (514)
Q Consensus 302 ---------~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~~-------~~i 364 (514)
..+..|.+||+.+++.. . +..+...+..++|+| ||+.|+.... ..|
T Consensus 156 ~~~~~~~~~~~~~~l~~~d~~~g~~~-----~------------l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l 218 (388)
T 3pe7_A 156 KKFHEFYFTKPCCRLMRVDLKTGEST-----V------------ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARM 218 (388)
T ss_dssp HHHHHHGGGCCCEEEEEEETTTCCEE-----E------------EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSE
T ss_pred chhhhhhccCCcceEEEEECCCCceE-----E------------eecCCccccccEECCCCCCEEEEEEecCCCCCcceE
Confidence 23467999999887531 1 222335688999999 9998887542 267
Q ss_pred EEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeC-CC----cEEEEecCCCceee-eeec
Q 010256 365 KLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SN----LFRVFGCSEGSAES-TTLE 438 (514)
Q Consensus 365 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg----~i~iwd~~~~~~~~-~~~~ 438 (514)
.++|... .....+..+.... .+..++|+|||+.|+..+. ++ .|++||+.+++... ..+.
T Consensus 219 ~~~d~~~--~~~~~l~~~~~~~-------------~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~ 283 (388)
T 3pe7_A 219 WLINEDG--TNMRKVKTHAEGE-------------SCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMP 283 (388)
T ss_dssp EEEETTS--CCCEESCCCCTTE-------------EEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEEC
T ss_pred EEEeCCC--CceEEeeeCCCCc-------------ccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCC
Confidence 7777653 3333333322100 1236899999997765443 22 39999999875432 2233
Q ss_pred CCCcc---eeEEEECCCCCceeec---------CCCCeEEEee--CCCCCccccCCccccccc-----------ceEEEE
Q 010256 439 ASKNP---MRRQVQTPSRPSRPLG---------SLSGVVRRVK--GADNSALDANGNAFDFSM-----------KLLHLA 493 (514)
Q Consensus 439 ~~~~~---v~~~~~~~~~~~l~s~---------s~d~~v~i~~--~~~~~~~~~~~~~~~~~~-----------~v~~~~ 493 (514)
++... .....|+|+|+.|+.. ..+..|.+++ +.... . ...+.. .+.+++
T Consensus 284 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~--~----l~~~~~~~~~~~~~~~~~~~~~~ 357 (388)
T 3pe7_A 284 ACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH--R----VARHDTSWKVFEGDRQVTHPHPS 357 (388)
T ss_dssp CEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEE--E----EEECCCCCCCBTTBSSTTCCCCE
T ss_pred CceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE--E----eccccCcccccccccccCCCCcc
Confidence 31111 1223789999988864 4456777733 22111 1 111222 578899
Q ss_pred EcCCCCEEEEEe
Q 010256 494 WHPSENSIACAA 505 (514)
Q Consensus 494 ~spd~~~l~~~~ 505 (514)
|+|||+.|+.++
T Consensus 358 ~spDg~~l~~~s 369 (388)
T 3pe7_A 358 FTPDDKQILFTS 369 (388)
T ss_dssp ECTTSSEEEEEE
T ss_pred CCCCCCEEEEEe
Confidence 999999999766
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-17 Score=156.77 Aligned_cols=293 Identities=10% Similarity=0.059 Sum_probs=183.4
Q ss_pred cccceEEEEEcCCCCeEEEecCC---CeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 34 EVDIISAIEFDKSGDHLATGDRG---GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
|...+.+++|||||++|+..... ..|.+|++.+++.. .+..+.
T Consensus 34 ~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~------------------------~l~~~~---------- 79 (396)
T 3c5m_A 34 HRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV------------------------QLTEGK---------- 79 (396)
T ss_dssp ECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE------------------------ECCCSS----------
T ss_pred cceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE------------------------EeecCC----------
Confidence 44457889999999998877543 36888888766531 111111
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
......+.| +++|++|+.++.++.|.+|++.+++...+...+. .|+++|+.+
T Consensus 80 -~~~~~~~~~--spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~---------------------~~~~~g~~l---- 131 (396)
T 3c5m_A 80 -GDNTFGGFI--STDERAFFYVKNELNLMKVDLETLEEQVIYTVDE---------------------EWKGYGTWV---- 131 (396)
T ss_dssp -CBCTTTCEE--CTTSSEEEEEETTTEEEEEETTTCCEEEEEECCT---------------------TEEEEEEEE----
T ss_pred -CCccccceE--CCCCCEEEEEEcCCcEEEEECCCCCcEEEEeccc---------------------ccCCCCCEE----
Confidence 011233678 6788899999999999999999887665544331 255666655
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe------cCCeEEEEeccCC
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA------DDLRINLWNLEIS 264 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~------~d~~i~iwd~~~~ 264 (514)
+....+....+|. ..+.|+|+++.++.. .+..|.+||+.++
T Consensus 132 --------~~~~~~~~~~~~~-------------------------~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g 178 (396)
T 3c5m_A 132 --------ANSDCTKLVGIEI-------------------------LKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETG 178 (396)
T ss_dssp --------ECTTSSEEEEEEE-------------------------EGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTC
T ss_pred --------EeccCCccccccc-------------------------cccccCCCCcceeeeeeccCCCcceEEEEECCCC
Confidence 4443333333222 123467888876643 4568999999865
Q ss_pred CceeeeeccCCCcccccCCceEEEEEec-CCCcEEEEEecC------CeEEEEEcCCCccccccccceeccCCCCcccee
Q 010256 265 NQSFNIVDVKPANMEDLTEVITSAEFHP-THCNMLAYSSSK------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFF 337 (514)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p-~~~~~l~~~~~d------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (514)
+.. . +..+...+..+.|+| ++ ..|+..+.+ ..|.+||+..+... .+....
T Consensus 179 ~~~-~--------~~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-----~l~~~~-------- 235 (396)
T 3c5m_A 179 ELE-V--------IHQDTAWLGHPIYRPFDD-STVGFCHEGPHDLVDARMWLVNEDGSNVR-----KIKEHA-------- 235 (396)
T ss_dssp CEE-E--------EEEESSCEEEEEEETTEE-EEEEEEECSCSSSCSCCCEEEETTSCCCE-----ESSCCC--------
T ss_pred cEE-e--------eccCCcccccceECCCCC-CEEEEEecCCCCCCCceEEEEECCCCcee-----EeeccC--------
Confidence 432 2 223566788999999 77 666665543 36888887654421 111000
Q ss_pred eccccceeEEEEecCCCEEEEEe-C-----CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcC-CC
Q 010256 338 TEIIASISDIKFARNGRHILSRD-Y-----MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DG 410 (514)
Q Consensus 338 ~~~~~~i~~~~~s~~g~~l~~~~-~-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~ 410 (514)
....+..++|+|+|++|+..+ + +.|++||+.+ ++... +..... . .+.|+| ||
T Consensus 236 --~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-g~~~~-l~~~~~----------------~-~~~~s~~dg 294 (396)
T 3c5m_A 236 --EGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET-LENEE-VMVMPP----------------C-SHLMSNFDG 294 (396)
T ss_dssp --TTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT-CCEEE-EEECCS----------------E-EEEEECSSS
T ss_pred --CCccccceEECCCCCEEEEEecCCCCccceEEEEECCC-CCeEE-eeeCCC----------------C-CCCccCCCC
Confidence 013578899999999877642 1 3499999985 44322 221111 1 378999 99
Q ss_pred CEEEEEe----------------CCCcEEEEecCCCceeeeeecCCCc-----------ceeEEEECCCCCceeecCC-C
Q 010256 411 GRVATGS----------------YSNLFRVFGCSEGSAESTTLEASKN-----------PMRRQVQTPSRPSRPLGSL-S 462 (514)
Q Consensus 411 ~~l~s~~----------------~dg~i~iwd~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~s~s~-d 462 (514)
++|++++ .++.|++||+.++.. ..+..+.. .+..+.|+|+++.|+..+. +
T Consensus 295 ~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~ 372 (396)
T 3c5m_A 295 SLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA--QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFE 372 (396)
T ss_dssp SEEEEEECCC----------CCCCCCEEEEEETTTTBC--CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT
T ss_pred ceEEEecCCcceeeccccccccCCCCcEEEEecccCce--EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCC
Confidence 9888754 347899999987643 33444433 2556789999998877654 4
Q ss_pred CeEEE
Q 010256 463 GVVRR 467 (514)
Q Consensus 463 ~~v~i 467 (514)
+...+
T Consensus 373 ~~~~l 377 (396)
T 3c5m_A 373 GVPAI 377 (396)
T ss_dssp SSCEE
T ss_pred CCceE
Confidence 44444
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.76 E-value=9.5e-16 Score=142.13 Aligned_cols=278 Identities=9% Similarity=0.005 Sum_probs=169.5
Q ss_pred EEEEeeCCCCcEEEEee----------CCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcc
Q 010256 117 KIRWCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (514)
Q Consensus 117 ~i~~~~~~~~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 186 (514)
.++| +++|++++++. .++.|.+||..+.+............ .....+..++++|||+.+
T Consensus 54 ~i~~--spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~---------~~g~~p~~i~~spdg~~l 122 (361)
T 2oiz_A 54 HVQV--SNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRV---------QGLNYDGLFRQTTDGKFI 122 (361)
T ss_dssp EEEE--CTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBC---------CBCCCGGGEEECTTSSEE
T ss_pred ceEE--CCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccc---------ccCCCcceEEECCCCCEE
Confidence 7888 67888998876 36789999999887666554321000 000122378999999988
Q ss_pred ccccCCCCCCcccCCCC--CCcEEeceeecccccccccccccc-ccccCccCeEEEEECCCC-CEEEEe-cCCeEEEEec
Q 010256 187 ERNFGCASNDSSFPPGG--VSSLRLPVVVTSQETNLVAGCRRI-YAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNL 261 (514)
Q Consensus 187 ~~~~~~~~~~~~~~~~~--~~~i~i~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~ 261 (514)
+++.. ++.|.+|| +..... ... + . ......+.+.|++ ..+++. .||.+.+|+.
T Consensus 123 ------------~v~n~~~~~~v~v~d-~~~~~~------~~~~i-~--~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~ 180 (361)
T 2oiz_A 123 ------------VLQNASPATSIGIVD-VAKGDY------VEDVT-A--AAGCWSVIPQPNRPRSFMTICGDGGLLTINL 180 (361)
T ss_dssp ------------EEEEESSSEEEEEEE-TTTTEE------EEEEG-G--GTTEEEEEECTTSSSEEEEEETTSSEEEEEE
T ss_pred ------------EEECCCCCCeEEEEE-CCCCcE------EEEEe-c--CCCcceeEEcCCCCeeEEEECCCCcEEEEEE
Confidence 66543 68899999 332211 111 1 0 0122335567765 455555 8899999988
Q ss_pred cCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccc
Q 010256 262 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 341 (514)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (514)
+........... ...+.....+ ..+.++|++ ..++..+.++.+.++|+....... ...+...... ........
T Consensus 181 ~~~g~~~~~~~~-~~~~~~~~~~-~~~~~~~~g-~~~~~~~~~~~v~v~d~~~~~~~~--~~~~~~~~~~--~~~~~~~p 253 (361)
T 2oiz_A 181 GEDGKVASQSRS-KQMFSVKDDP-IFIAPALDK-DKAHFVSYYGNVYSADFSGDEVKV--DGPWSLLNDE--DKAKNWVP 253 (361)
T ss_dssp CTTSSEEEEEEC-CCCSCTTTSC-BCSCCEECS-SEEEEEBTTSEEEEEECSSSSCEE--EEEEESCCHH--HHHTTCEE
T ss_pred CCCCcEeeeccc-cceEcCCCCc-eEEEecccC-CEEEEEeCCCeEEEEEecCCCcee--cccccccCcc--cccccccc
Confidence 653333211100 0011111222 233346777 566667789999999987553210 1111100000 00000000
Q ss_pred cceeEEEEecCCCEEEEE-e-----------CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCC
Q 010256 342 ASISDIKFARNGRHILSR-D-----------YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (514)
Q Consensus 342 ~~i~~~~~s~~g~~l~~~-~-----------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 409 (514)
.....++|+|+++.+++. . ...|.+||+.+ .+.+.++..+. .. .++|+||
T Consensus 254 ~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t-~~~v~~i~~~~-p~----------------~ia~spd 315 (361)
T 2oiz_A 254 GGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT-KQRVARIPGRD-AL----------------SMTIDQQ 315 (361)
T ss_dssp CCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT-TEEEEEEECTT-CC----------------EEEEETT
T ss_pred CCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC-CcEEEEEecCC-ee----------------EEEECCC
Confidence 112237899998877764 2 24899999998 88888887765 22 8999999
Q ss_pred CCEEEEEeCCCcEEEEecCCC--ceeeeeecCCCcceeEEEECCCCC
Q 010256 410 GGRVATGSYSNLFRVFGCSEG--SAESTTLEASKNPMRRQVQTPSRP 454 (514)
Q Consensus 410 ~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~ 454 (514)
|++|++++. +.|.+||..++ +.. ..+..+......++++|+|+
T Consensus 316 g~~l~v~n~-~~v~v~D~~t~~l~~~-~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 316 RNLMLTLDG-GNVNVYDISQPEPKLL-RTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp TTEEEEECS-SCEEEEECSSSSCEEE-EEETTSCSSEEEEEECCCSC
T ss_pred CCEEEEeCC-CeEEEEECCCCcceee-EEeccCCCCcEEEEecCCCC
Confidence 999998887 99999999987 433 55556667778899999975
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-16 Score=147.56 Aligned_cols=258 Identities=11% Similarity=0.015 Sum_probs=156.6
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEEec-CCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccc
Q 010256 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERT-DTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (514)
...+..++|+|||++|++++.+ .|.+|++. +++.. .......+ +
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~---------------------~~~~~~~~-------------g 83 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIV---------------------HEASHPIG-------------G 83 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEE---------------------EEEEEECC-------------S
T ss_pred CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEE---------------------EeeEeecC-------------C
Confidence 3468899999999999998887 89999986 54421 01111111 1
Q ss_pred ceeEEEEeeCCCCcE--EEEee-------------CCCeEEEEEcC-ccEEEEEeeccCCCccccCCcceecccccCCce
Q 010256 114 KINKIRWCQSANSAL--YLLST-------------NDKTIKLWKVQ-EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPK 177 (514)
Q Consensus 114 ~v~~i~~~~~~~~~~--l~s~~-------------~d~~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 177 (514)
....++| +++|++ ++++. .++.+.+|++. +++........... ... .+..+
T Consensus 84 ~~~~~~~--spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~----~~~-------~~~~~ 150 (365)
T 1jof_A 84 HPRANDA--DTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQ----ENT-------GIHGM 150 (365)
T ss_dssp SGGGGCT--TSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECC----TTC-------CEEEE
T ss_pred CCccEEE--CCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeC----CCC-------cceEE
Confidence 1334667 677774 44553 68999999997 45543322210000 011 12278
Q ss_pred eeccCCCccccccCCCCCCcccCCC-CCCcEEeceeec-ccccccccccccccc-ccCccCeEEEEECCCCCEEEEe--c
Q 010256 178 SYMANGGCGERNFGCASNDSSFPPG-GVSSLRLPVVVT-SQETNLVAGCRRIYA-HAHDYHINSISNNSDGETFISA--D 252 (514)
Q Consensus 178 ~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~i~i~~~~~-~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~--~ 252 (514)
+|+|||+.+ ++++ .++.|.+|+ +. ..+.. ....+. ..|...+..++|+|+|++++++ .
T Consensus 151 ~~spdG~~l------------~~~~~~~~~v~~~~-~~~~g~~~----~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~ 213 (365)
T 1jof_A 151 VFDPTETYL------------YSADLTANKLWTHR-KLASGEVE----LVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA 213 (365)
T ss_dssp EECTTSSEE------------EEEETTTTEEEEEE-ECTTSCEE----EEEEEECSSTTCCEEEEEECTTSSEEEEEETT
T ss_pred EECCCCCEE------------EEEcCCCCEEEEEE-ECCCCCEE----EeeeEecCCCCCCCCEeEECCCCCEEEEEECC
Confidence 999999976 5433 467899999 43 11110 011110 1235668999999999988776 4
Q ss_pred CCeEEEEeccC--CCcee--eeeccCCCcccccCC------ceEEEE-EecCCCcEEEEEecC-C-----eEEEEEcC-C
Q 010256 253 DLRINLWNLEI--SNQSF--NIVDVKPANMEDLTE------VITSAE-FHPTHCNMLAYSSSK-G-----SIRLIDMR-Q 314 (514)
Q Consensus 253 d~~i~iwd~~~--~~~~~--~~~~~~~~~~~~~~~------~i~~v~-~~p~~~~~l~~~~~d-g-----~i~~wd~~-~ 314 (514)
++.|.+|+++. ++... ..+..-+..+.++.. .+..++ |+|+| ++|+++..+ . .|.+|++. +
T Consensus 214 ~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG-~~l~v~~~~~~~~~~~~i~v~~~~~~ 292 (365)
T 1jof_A 214 GNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRDC 292 (365)
T ss_dssp TTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECTT
T ss_pred CCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCC-CEEEEECCCCCCCCCCeEEEEEECCC
Confidence 78999998753 32211 111111111222332 588999 99999 677666543 3 89999996 4
Q ss_pred CccccccccceeccCCCCccceeeccccceeEEEEec---CCCEEEEEe-C-CeEEEEEccC
Q 010256 315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR---NGRHILSRD-Y-MTLKLWDINM 371 (514)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~---~g~~l~~~~-~-~~i~iwd~~~ 371 (514)
++.. .... ....+...+..++|+| +|++|++++ + +.|.+|+++.
T Consensus 293 g~~~----~~~~---------~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 293 GSIE----KQLF---------LSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp SCEE----EEEE---------EEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred CCEE----Eeee---------eeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 4421 1000 0011123466789999 899999874 4 8999999985
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.71 E-value=4.4e-15 Score=137.69 Aligned_cols=312 Identities=8% Similarity=-0.014 Sum_probs=185.0
Q ss_pred CCCcEEEEee------CCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCc
Q 010256 124 ANSALYLLST------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS 197 (514)
Q Consensus 124 ~~~~~l~s~~------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 197 (514)
+++.+++++. .|+.|.+||..+++........ ..+ .++++|||+.+
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g----------------~~p-~i~~spdg~~l----------- 64 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTA----------------FNG-HVQVSNDGKKI----------- 64 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECC----------------EEE-EEEECTTSSEE-----------
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCC----------------CCC-ceEECCCCCEE-----------
Confidence 3445555543 4789999999998866544332 122 67899999987
Q ss_pred ccCCC----------CCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--c-CCeEEEEeccCC
Q 010256 198 SFPPG----------GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--D-DLRINLWNLEIS 264 (514)
Q Consensus 198 ~~~~~----------~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~-d~~i~iwd~~~~ 264 (514)
++++ .++.|.+|| ....+........... ..+......++++|+|++|+++ . +++|.+||+++.
T Consensus 65 -yv~~~~~~~~~~g~~~~~v~v~d-~~t~~~~~~i~~~~~~-~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~ 141 (361)
T 2oiz_A 65 -YTMTTYHERITRGKRSDVVEVWD-ADKLTFEKEISLPPKR-VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKG 141 (361)
T ss_dssp -EEEEEEETTSSSSCEEEEEEEEE-TTTCCEEEEEEECTTB-CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTT
T ss_pred -EEEEecccccccCCCCCEEEEEE-CcCCcEEEEEEcCccc-cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCC
Confidence 4443 367799998 3322211100000000 0122346679999999999887 3 689999999976
Q ss_pred CceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCC-Ccccccc--ccceeccCCCCccceeeccc
Q 010256 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ-SALCDTH--SKLFEEQEAPGTRSFFTEII 341 (514)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 341 (514)
+....++ . . .....+.+.|++...+++.+.||.+.+|++.. ++..... ...++. ..
T Consensus 142 ~~~~~~i-------~-~-~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~------------~~ 200 (361)
T 2oiz_A 142 DYVEDVT-------A-A-AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSV------------KD 200 (361)
T ss_dssp EEEEEEG-------G-G-TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCT------------TT
T ss_pred cEEEEEe-------c-C-CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcC------------CC
Confidence 5432201 1 1 12234667887767888899999999999865 3321000 011111 11
Q ss_pred cceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCce--eeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeC
Q 010256 342 ASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPV--ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY 418 (514)
Q Consensus 342 ~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 418 (514)
.++ .+.+++++..++..+. +.|.++|+.. .... ..+.......... .... . ....++|+||++.++.+..
T Consensus 201 ~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~-~~~~~~~~~~~~~~~~~~~-~~~p-~---g~~~~a~~~dg~~lyv~~~ 273 (361)
T 2oiz_A 201 DPI-FIAPALDKDKAHFVSYYGNVYSADFSG-DEVKVDGPWSLLNDEDKAK-NWVP-G---GYNLVGLHRASGRMYVFMH 273 (361)
T ss_dssp SCB-CSCCEECSSEEEEEBTTSEEEEEECSS-SSCEEEEEEESCCHHHHHT-TCEE-C---CSSCEEEETTTTEEEEEEE
T ss_pred Cce-EEEecccCCEEEEEeCCCeEEEEEecC-CCceecccccccCcccccc-cccc-C---CeeEEEEecCCCeEEEEEc
Confidence 121 2334677776665544 8999999874 2211 1111100000000 0000 0 0013789999888776543
Q ss_pred -----------CCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCccccccc
Q 010256 419 -----------SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSM 487 (514)
Q Consensus 419 -----------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~ 487 (514)
++.|.+||+.+++ ...++..+. +..++++|++++|++++. +.|.+++..... .+..........
T Consensus 274 ~~~~~~~~~~~~~~v~viD~~t~~-~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~-l~~~~~i~~~G~ 348 (361)
T 2oiz_A 274 PDGKEGTHKFPAAEIWVMDTKTKQ-RVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPE-PKLLRTIEGAAE 348 (361)
T ss_dssp SSCCTTCTTCCCSEEEEEETTTTE-EEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSS-CEEEEEETTSCS
T ss_pred cCCCcccccCCCceEEEEECCCCc-EEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCc-ceeeEEeccCCC
Confidence 3589999999874 456777776 889999999999998887 999995433220 011111123466
Q ss_pred ceEEEEEcCCCC
Q 010256 488 KLLHLAWHPSEN 499 (514)
Q Consensus 488 ~v~~~~~spd~~ 499 (514)
....++++|||+
T Consensus 349 ~P~~~~~~p~G~ 360 (361)
T 2oiz_A 349 ASLQVQFHPVGG 360 (361)
T ss_dssp SEEEEEECCCSC
T ss_pred CcEEEEecCCCC
Confidence 778999999986
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-14 Score=133.96 Aligned_cols=276 Identities=12% Similarity=0.101 Sum_probs=177.3
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccce
Q 010256 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (514)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (514)
..|.+++|++++..++..+.++.++.|.- + ....+..+. ..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----------------------~~~~~~~~~------------~~~ 47 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITA---E-----------------------PWLEISKKG------------LQL 47 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEEC---E-----------------------EEEEEESSC------------CCE
T ss_pred cccceeeecCCccceeEEeecccCccccc---c-----------------------eeEEEeccC------------ccc
Confidence 45788899998888877777888888832 1 112334443 557
Q ss_pred eEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCC
Q 010256 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (514)
Q Consensus 116 ~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (514)
.+++| +++|++++++..++.|.+||..+++.....
T Consensus 48 ~~~~~--~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~------------------------------------------- 82 (333)
T 2dg1_A 48 EGLNF--DRQGQLFLLDVFEGNIFKINPETKEIKRPF------------------------------------------- 82 (333)
T ss_dssp EEEEE--CTTSCEEEEETTTCEEEEECTTTCCEEEEE-------------------------------------------
T ss_pred cCcEE--CCCCCEEEEECCCCEEEEEeCCCCcEEEEe-------------------------------------------
Confidence 88999 567777778888999999998876543221
Q ss_pred CcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cC----CeEEEEeccCCCceeee
Q 010256 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD----LRINLWNLEISNQSFNI 270 (514)
Q Consensus 196 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d----~~i~iwd~~~~~~~~~~ 270 (514)
..+...+.+++++++++++++. .+ +.|.+||.++.... .+
T Consensus 83 ----------------------------------~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~-~~ 127 (333)
T 2dg1_A 83 ----------------------------------VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ-DI 127 (333)
T ss_dssp ----------------------------------ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE-EE
T ss_pred ----------------------------------eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEE-EE
Confidence 0122457899999999988887 55 68999998855432 11
Q ss_pred eccCCCcccccCCceEEEEEecCCCcEEEEEec------CCeEEEEEcCCCccccccccceeccCCCCccceeeccccce
Q 010256 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS------KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (514)
Q Consensus 271 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~------dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 344 (514)
+. .......+..++++|++ +++++... .+.|..+|..+++.. .+ ......+
T Consensus 128 ~~-----~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-----~~------------~~~~~~~ 184 (333)
T 2dg1_A 128 IE-----DLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVT-----PI------------IQNISVA 184 (333)
T ss_dssp EC-----SSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCEE-----EE------------EEEESSE
T ss_pred Ec-----cCccCCcccceEECCCC-CEEEEeccccccCCCceEEEEeCCCCEEE-----Ee------------ecCCCcc
Confidence 10 01234578999999998 77776553 245666665543321 11 1112357
Q ss_pred eEEEEecCCCEEEEE-e-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcE
Q 010256 345 SDIKFARNGRHILSR-D-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 422 (514)
Q Consensus 345 ~~~~~s~~g~~l~~~-~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 422 (514)
..++|+|+|+.|+.+ . ++.|.+||+...+..+..+...... .+. . ......++++++|+++++...++.|
T Consensus 185 ~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~-----~~~--~-~~~~~~i~~d~~G~l~v~~~~~~~v 256 (333)
T 2dg1_A 185 NGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPY-----YFT--G-HEGPDSCCIDSDDNLYVAMYGQGRV 256 (333)
T ss_dssp EEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEE-----ECC--S-SSEEEEEEEBTTCCEEEEEETTTEE
T ss_pred cceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEE-----ecC--C-CCCCCceEECCCCCEEEEEcCCCEE
Confidence 889999999876654 3 3899999997434433322110000 000 0 0012379999999988888788999
Q ss_pred EEEecCCCceeeeeecCCC------cceeEEEECCCCCceeecCCC
Q 010256 423 RVFGCSEGSAESTTLEASK------NPMRRQVQTPSRPSRPLGSLS 462 (514)
Q Consensus 423 ~iwd~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~s~s~d 462 (514)
.+||.. ++ ....+..+. ..+..++++|+++.|..++.+
T Consensus 257 ~~~d~~-g~-~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 257 LVFNKR-GY-PIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEECTT-SC-EEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EEECCC-CC-EEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 999985 43 333444332 268899999998777655544
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.6e-13 Score=130.40 Aligned_cols=323 Identities=11% Similarity=0.029 Sum_probs=204.5
Q ss_pred CCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEEEeeCC
Q 010256 45 KSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSA 124 (514)
Q Consensus 45 ~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~ 124 (514)
|.+.++++...++.|.++|..+++.. ..+... ..+..+.| ++
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~-----------------------~~i~~g-------------~~p~~v~~--Sp 206 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIK-----------------------TVLDTG-------------YAVHISRL--SA 206 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEE-----------------------EEEECS-------------SCEEEEEE--CT
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEE-----------------------EEEeCC-------------CCccceEE--CC
Confidence 44556777778999999999877642 233221 34678888 67
Q ss_pred CCcEEEEeeCCCeEEEEEcC--ccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCC
Q 010256 125 NSALYLLSTNDKTIKLWKVQ--EKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPG 202 (514)
Q Consensus 125 ~~~~l~s~~~d~~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 202 (514)
+|+++++++.|+.|.+||+. +++......
T Consensus 207 DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~------------------------------------------------- 237 (567)
T 1qks_A 207 SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK------------------------------------------------- 237 (567)
T ss_dssp TSCEEEEEETTSEEEEEETTSSSCCEEEEEE-------------------------------------------------
T ss_pred CCCEEEEEcCCCeEEEEECCCCCCcEeEEEe-------------------------------------------------
Confidence 88899999999999999995 443322111
Q ss_pred CCCcEEeceeeccccccccccccccccccCccCeEEEEEC----CCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCC
Q 010256 203 GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNN----SDGETFISA--DDLRINLWNLEISNQSFNIVDVKPA 276 (514)
Q Consensus 203 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~ 276 (514)
.+ .....++|+ |||++++++ .+++|.++|..+.+... .+.....
T Consensus 238 ---------------------------~G--~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~-~i~~~~~ 287 (567)
T 1qks_A 238 ---------------------------IG--SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKK-IQSTRGM 287 (567)
T ss_dssp ---------------------------CC--SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEE-EEECCEE
T ss_pred ---------------------------cC--CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEE-EEecccc
Confidence 00 124578999 699998887 68999999988665443 3222111
Q ss_pred ccc---ccC-CceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecC
Q 010256 277 NME---DLT-EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (514)
Q Consensus 277 ~~~---~~~-~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 352 (514)
... .|. ..+..+..+++++.+++....+|.|.++|....+... +..+.. ......+.|+|+
T Consensus 288 ~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~--v~~i~~-------------~~~~~d~~~~pd 352 (567)
T 1qks_A 288 TYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK--TTEISA-------------ERFLHDGGLDGS 352 (567)
T ss_dssp CTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE--EEEEEC-------------CSSEEEEEECTT
T ss_pred ccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccce--eeeeec-------------cccccCceECCC
Confidence 111 122 2678899999886677777778999999987643210 111111 124667899999
Q ss_pred CCEEEEEe--CCeEEEEEccCCCCceeeeee-ccccccccccccccCCccceeeEE-EcCCCC-EEEEEe-CCCcEEEEe
Q 010256 353 GRHILSRD--YMTLKLWDINMDSGPVATFQV-HEHLRPKLCDLYENDSIFDKFECC-LSGDGG-RVATGS-YSNLFRVFG 426 (514)
Q Consensus 353 g~~l~~~~--~~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~-~l~s~~-~dg~i~iwd 426 (514)
|++++++. +++|.++|+.+ ++.+..+.. ...... . . ... ++|++. .++++. .++.|.++|
T Consensus 353 gr~~~va~~~sn~V~ViD~~t-~kl~~~i~vgg~~Php--------g--~---g~~~~~p~~g~v~~t~~~g~~~Vsvid 418 (567)
T 1qks_A 353 HRYFITAANARNKLVVIDTKE-GKLVAIEDTGGQTPHP--------G--R---GANFVHPTFGPVWATSHMGDDSVALIG 418 (567)
T ss_dssp SCEEEEEEGGGTEEEEEETTT-TEEEEEEECSSSSBCC--------T--T---CEEEEETTTEEEEEEEBSSSSEEEEEE
T ss_pred CCEEEEEeCCCCeEEEEECCC-CcEEEEEeccCcCCCC--------c--c---ceeeECCCCCcEEEeCCCCCCeEEEec
Confidence 99988754 38999999997 776666543 211100 0 0 223 578754 444543 568999999
Q ss_pred cCCCc------eeeeeecCCCcceeEEEECCCCCceeecCC-------CCeEEEeeCCCC-----Ccc-c-cCC----cc
Q 010256 427 CSEGS------AESTTLEASKNPMRRQVQTPSRPSRPLGSL-------SGVVRRVKGADN-----SAL-D-ANG----NA 482 (514)
Q Consensus 427 ~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~-------d~~v~i~~~~~~-----~~~-~-~~~----~~ 482 (514)
..+.+ +...++......-..+..+|++++|.+... ...|.+++...+ ... + +.. ..
T Consensus 419 ~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~ 498 (567)
T 1qks_A 419 TDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGI 498 (567)
T ss_dssp CCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTC
T ss_pred CCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEecccccccc
Confidence 88732 233555544333345778999998877552 357777544433 100 0 100 00
Q ss_pred cccccceEEEEEcCCCCEEEEEe------cCcEEEEe
Q 010256 483 FDFSMKLLHLAWHPSENSIACAA------SNSLYMYY 513 (514)
Q Consensus 483 ~~~~~~v~~~~~spd~~~l~~~~------~~~~~i~~ 513 (514)
-+-...+.++.|+|+|+.+.++. ++.+.++.
T Consensus 499 ~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 499 TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred CCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence 01246889999999999988763 46666664
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=4.3e-14 Score=126.94 Aligned_cols=245 Identities=10% Similarity=0.116 Sum_probs=162.4
Q ss_pred ccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEe-cCCCcEEEEEec-CCe
Q 010256 230 HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH-PTHCNMLAYSSS-KGS 306 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~-p~~~~~l~~~~~-dg~ 306 (514)
.++-..+.+++++++++++++. .++.|.+||.+ ++....+ ... ....++...+..+++. +++ +++++... ++.
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~-~~~-~~~~~~~~~p~~i~~~~~~g-~l~v~~~~~~~~ 101 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQF-GEC-GKRDSQLLYPNRVAVVRNSG-DIIVTERSPTHQ 101 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEE-CCB-SSSTTCBSSEEEEEEETTTT-EEEEEECGGGCE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEe-ccc-CCCcccccCceEEEEEcCCC-eEEEEcCCCCCE
Confidence 3455678999999999988887 89999999987 4332221 110 0112344568999995 666 66666543 899
Q ss_pred EEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeecccc
Q 010256 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHL 385 (514)
Q Consensus 307 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~ 385 (514)
|.+|| .+++.. ..+.. .+...+.+++++|+|+++++... +.|.+||.. ++.+..+......
T Consensus 102 i~~~d-~~g~~~----~~~~~-----------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~~~~~~~~ 163 (286)
T 1q7f_A 102 IQIYN-QYGQFV----RKFGA-----------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN--GNVLHKFGCSKHL 163 (286)
T ss_dssp EEEEC-TTSCEE----EEECT-----------TTCSCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEEECTTTC
T ss_pred EEEEC-CCCcEE----EEecC-----------ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC--CCEEEEeCCCCcc
Confidence 99999 444432 22211 11246789999999998877654 899999965 5555544321111
Q ss_pred ccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeec--CCCcceeEEEECCCCCceeecCCCC
Q 010256 386 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE--ASKNPMRRQVQTPSRPSRPLGSLSG 463 (514)
Q Consensus 386 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~s~d~ 463 (514)
.....++++++|+++++...++.|++||.... ....+. ++...+..++++++++++++...++
T Consensus 164 -------------~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~--~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~ 228 (286)
T 1q7f_A 164 -------------EFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ--YLRQIGGEGITNYPIGVGINSNGEILIADNHNN 228 (286)
T ss_dssp -------------SSEEEEEECSSSEEEEEEGGGTEEEEEETTCC--EEEEESCTTTSCSEEEEEECTTCCEEEEECSSS
T ss_pred -------------CCcEEEEECCCCCEEEEECCCCEEEEEcCCCC--EEEEEccCCccCCCcEEEECCCCCEEEEeCCCC
Confidence 11338999999998888888999999998532 233443 3346788999999999999888876
Q ss_pred -eEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecCcEEEEe
Q 010256 464 -VVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 464 -~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~i~~ 513 (514)
.|++++........+.. ......+..++++|+|+++++..++.+.+|.
T Consensus 229 ~~i~~~~~~g~~~~~~~~--~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~ 277 (286)
T 1q7f_A 229 FNLTIFTQDGQLISALES--KVKHAQCFDVALMDDGSVVLASKDYRLYIYR 277 (286)
T ss_dssp CEEEEECTTSCEEEEEEE--SSCCSCEEEEEEETTTEEEEEETTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEcc--cCCCCcceeEEECCCCcEEEECCCCeEEEEE
Confidence 88884321100000100 0112347899999999988886677888885
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.9e-14 Score=129.83 Aligned_cols=259 Identities=9% Similarity=0.078 Sum_probs=166.8
Q ss_pred cceEEEEEcCCCCeEEEecCC------------------------CeEEEEEecCCcccCCcccccccccccccCCccce
Q 010256 36 DIISAIEFDKSGDHLATGDRG------------------------GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFR 91 (514)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~d------------------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (514)
..|.+|+++|+|+++++...+ +.|.+||..+++.
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~---------------------- 81 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI---------------------- 81 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE----------------------
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE----------------------
Confidence 569999999999999888777 3677887665552
Q ss_pred eeeeec-cCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccE-EEEEeeccCCCccccCCcceec
Q 010256 92 YKTEFQ-SHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKK-VKKVFDWNVHPEKAAGNGPIFG 169 (514)
Q Consensus 92 ~~~~~~-~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~v~~ 169 (514)
...+. ++- .....+++ +++|.++++...++.|++|+..... ........
T Consensus 82 -~~~~~~~~~------------~~p~gia~--d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~-------------- 132 (329)
T 3fvz_A 82 -LQSSGKNLF------------YLPHGLSI--DTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRS-------------- 132 (329)
T ss_dssp -EEEECTTTC------------SSEEEEEE--CTTSCEEEEETTTTEEEEECTTCSSCCSEEESBT--------------
T ss_pred -EeccCCCcc------------CCceEEEE--CCCCCEEEEECCCCEEEEEeCCCCeEEEEEeccc--------------
Confidence 12222 221 45788999 5677788888888999999975431 11110000
Q ss_pred ccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECC-CCCEE
Q 010256 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETF 248 (514)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l 248 (514)
+ ..+. ..++-.....++++| ++.++
T Consensus 133 -------------~---------------~~g~--------------------------~~~~~~~P~~ia~~~~~g~ly 158 (329)
T 3fvz_A 133 -------------M---------------QPGS--------------------------DQNHFCQPTDVAVEPSTGAVF 158 (329)
T ss_dssp -------------T---------------BCCC--------------------------STTCCSSEEEEEECTTTCCEE
T ss_pred -------------C---------------CCCC--------------------------CccccCCCcEEEEeCCCCeEE
Confidence 0 0000 012335678999999 78888
Q ss_pred EEe--cCCeEEEEeccCCCceeeeeccCCC---cccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccccc
Q 010256 249 ISA--DDLRINLWNLEISNQSFNIVDVKPA---NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK 323 (514)
Q Consensus 249 ~s~--~d~~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 323 (514)
++. .++.|++|+.. +... ..+..... ...++-..+..++++|+++.++++...++.|++||..+++.. .
T Consensus 159 v~d~~~~~~I~~~~~~-g~~~-~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~----~ 232 (329)
T 3fvz_A 159 VSDGYCNSRIVQFSPS-GKFV-TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFV----R 232 (329)
T ss_dssp EEECSSCCEEEEECTT-SCEE-EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE----E
T ss_pred EEeCCCCCeEEEEcCC-CCEE-EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEE----E
Confidence 876 48999999954 4332 22110000 001123458899999993388888888999999999877653 2
Q ss_pred ceeccCCCCccceeeccccceeEEEEecCCCEEEEE-------eC-CeEEEEEccCCCCceeeeeecccccccccccccc
Q 010256 324 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-------DY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYEN 395 (514)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-------~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (514)
.+... .+...+.+++|+| +..+++. .. .+|++||..+ ++.+..+.....
T Consensus 233 ~~~~~----------~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~-g~~~~~~~~~~~----------- 289 (329)
T 3fvz_A 233 EIKHA----------SFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSS-GEIIDVFKPVRK----------- 289 (329)
T ss_dssp EECCT----------TTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTT-CCEEEEECCSSS-----------
T ss_pred EEecc----------ccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCC-CeEEEEEcCCCC-----------
Confidence 22211 2234678899998 4333332 22 5899999987 777766632111
Q ss_pred CCccceeeEEEcCCCCEEEEEeCCCcEEEEecCC
Q 010256 396 DSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 396 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 429 (514)
.......++++|+|.++++...+++|++|++..
T Consensus 290 -~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 290 -HFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp -CCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred -ccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 011133899999998888888999999999863
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-14 Score=146.61 Aligned_cols=183 Identities=11% Similarity=0.078 Sum_probs=122.1
Q ss_pred CCCCCE-EEEe--cCCeEEEEecc--CCCceeeeeccCCCcccc-----cCCceEEEEEecCCCcEEEEEecC-------
Q 010256 242 NSDGET-FISA--DDLRINLWNLE--ISNQSFNIVDVKPANMED-----LTEVITSAEFHPTHCNMLAYSSSK------- 304 (514)
Q Consensus 242 ~~~~~~-l~s~--~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~-----~~~~i~~v~~~p~~~~~l~~~~~d------- 304 (514)
||||+. |+.+ .+..|.++++. ...... .+.. +...+..++|+||| +.|++++.+
T Consensus 87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~--------~l~~~~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~ 157 (662)
T 3azo_A 87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPR--------PLTPVSAVGGGLRWADPVLLPER-GEVWCMAEEFTGEGPS 157 (662)
T ss_dssp CSSSSCEEEEEBTTTCCEEEECTTSTTCCCCE--------ECSCCCCSTTCEEEEEEEEETTT-TEEEEEEEEECSSSTT
T ss_pred ecCCCeEEEEEECCCCeEEEEcCCCCCCCCCE--------eccCCccCCCCccccCcEECCCC-CEEEEEEecccCCCCC
Confidence 499998 7766 35667777664 202222 2222 45678899999999 788888876
Q ss_pred ---CeEEEEEcCC------CccccccccceeccCCCCccceee-ccccceeEEEEecCCCEEEEEe-C--------CeEE
Q 010256 305 ---GSIRLIDMRQ------SALCDTHSKLFEEQEAPGTRSFFT-EIIASISDIKFARNGRHILSRD-Y--------MTLK 365 (514)
Q Consensus 305 ---g~i~~wd~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~g~~l~~~~-~--------~~i~ 365 (514)
..|++||+.+ +.. .. +. .+...+..++|||||++|+..+ + ..|+
T Consensus 158 ~~~~~i~~~~~~~~~~~~~~~~-----~~------------l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~ 220 (662)
T 3azo_A 158 DVRRFLAAVPLDGSAAADRSAV-----RE------------LSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELK 220 (662)
T ss_dssp CEEEEEEEEETTSTTTTCGGGS-----EE------------SSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEE
T ss_pred CceeEEEEEECCCCccccCCce-----eE------------EEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEE
Confidence 5899999987 432 11 11 2224678899999999998753 2 3799
Q ss_pred EEEccCCCC--ceeeee-eccccccccccccccCCccceeeEEEcCCCCEEEEEeCCC--cEEEEecCCCceeeeeecCC
Q 010256 366 LWDINMDSG--PVATFQ-VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN--LFRVFGCSEGSAESTTLEAS 440 (514)
Q Consensus 366 iwd~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~ 440 (514)
+||+...+. ....+. .+... +..++|+|||+++++++.++ .|++||+.+++.. .....+
T Consensus 221 ~~d~~~~g~~~~~~~l~~~~~~~---------------~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~ 284 (662)
T 3azo_A 221 TARVTEDGRFADTRTLLGGPEEA---------------IAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAAT-QLCRRE 284 (662)
T ss_dssp EEEECTTSCEEEEEEEEEETTBC---------------EEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEE-ESSCCS
T ss_pred EEEECCCCcccccEEeCCCCCce---------------EcceEECCCCeEEEEECCCCCeEEEEEECCCCcee-eccccc
Confidence 999983141 223332 22222 33799999999888888888 6677776555332 233333
Q ss_pred Ccc--------eeEEEECCCCCceeecCCCCeEEE
Q 010256 441 KNP--------MRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 441 ~~~--------v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
... +..++++|+++++++++. +.+++
T Consensus 285 ~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l 318 (662)
T 3azo_A 285 EEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVL 318 (662)
T ss_dssp SBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEE
T ss_pred ccccCccccccCceEeEeCCCEEEEEEEc-CccEE
Confidence 222 467889999999999998 88888
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-13 Score=126.27 Aligned_cols=270 Identities=12% Similarity=0.048 Sum_probs=167.9
Q ss_pred ceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCC
Q 010256 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDL 254 (514)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~ 254 (514)
++.|++++..+ +....++.++.|. ...... +..+...+.+++|++++++++++ .++
T Consensus 10 ~~~~~~~~~~~------------~~~~~~~~~~~~~----------~~~~~~-~~~~~~~~~~~~~~~~g~l~~~~~~~~ 66 (333)
T 2dg1_A 10 TLFYSGKSNSA------------VPIISESELQTIT----------AEPWLE-ISKKGLQLEGLNFDRQGQLFLLDVFEG 66 (333)
T ss_dssp BCCSCGGGGCS------------SCCCCGGGSCEEE----------CEEEEE-EESSCCCEEEEEECTTSCEEEEETTTC
T ss_pred eeeecCCccce------------eEEeecccCcccc----------cceeEE-EeccCccccCcEECCCCCEEEEECCCC
Confidence 67788887776 6666777777664 111112 23455667899999999988888 889
Q ss_pred eEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC----CeEEEEEcCCCccccccccceeccCC
Q 010256 255 RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK----GSIRLIDMRQSALCDTHSKLFEEQEA 330 (514)
Q Consensus 255 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d----g~i~~wd~~~~~~~~~~~~~~~~~~~ 330 (514)
.|.+||.++++.. .+ ...+...+.+++++|++ +++++...+ +.|.+||..++... ..+...
T Consensus 67 ~i~~~d~~~~~~~-~~-------~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~~~~~~----~~~~~~-- 131 (333)
T 2dg1_A 67 NIFKINPETKEIK-RP-------FVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNLQ----DIIEDL-- 131 (333)
T ss_dssp EEEEECTTTCCEE-EE-------EECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSCE----EEECSS--
T ss_pred EEEEEeCCCCcEE-EE-------eeCCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeCCCCEEE----EEEccC--
Confidence 9999999855432 21 11245679999999998 777776666 68999998876531 011100
Q ss_pred CCccceeeccccceeEEEEecCCCEEEEEeC-----CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEE
Q 010256 331 PGTRSFFTEIIASISDIKFARNGRHILSRDY-----MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC 405 (514)
Q Consensus 331 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 405 (514)
.+...+.+++++|+|+++++... ....||.+...+..+..+...... ...++
T Consensus 132 --------~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---------------~~~i~ 188 (333)
T 2dg1_A 132 --------STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISV---------------ANGIA 188 (333)
T ss_dssp --------SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESS---------------EEEEE
T ss_pred --------ccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCc---------------ccceE
Confidence 01246889999999998887542 133444443322233333221111 22799
Q ss_pred EcCCCCEEE-EEeCCCcEEEEecCC-Cceee-------eeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCcc
Q 010256 406 LSGDGGRVA-TGSYSNLFRVFGCSE-GSAES-------TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSAL 476 (514)
Q Consensus 406 ~s~~~~~l~-s~~~dg~i~iwd~~~-~~~~~-------~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~ 476 (514)
|+|+|++|+ +.+.++.|++|++.+ +.... ..+.++ ..+..+++.++++++++...++.|.+++.......
T Consensus 189 ~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~~~~ 267 (333)
T 2dg1_A 189 LSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIG 267 (333)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEE
T ss_pred ECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCCCCEEE
Confidence 999998654 445678999999964 22211 111222 35678999999998888877888887432110000
Q ss_pred ccCCcc--cccccceEEEEEcCCCCEEEEEecC
Q 010256 477 DANGNA--FDFSMKLLHLAWHPSENSIACAASN 507 (514)
Q Consensus 477 ~~~~~~--~~~~~~v~~~~~spd~~~l~~~~~~ 507 (514)
.+.... .++...+.+++|+||++.|.+++.+
T Consensus 268 ~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 268 QILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 111000 0111268999999998887766544
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-13 Score=127.09 Aligned_cols=214 Identities=10% Similarity=0.052 Sum_probs=140.2
Q ss_pred cCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccC--CCcccccCCceEEEEEec-CCCcEEEEEe-cCC
Q 010256 231 AHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK--PANMEDLTEVITSAEFHP-THCNMLAYSS-SKG 305 (514)
Q Consensus 231 ~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~i~~v~~~p-~~~~~l~~~~-~dg 305 (514)
++-..+..++++|+|+++++. .++.|++||..........+... +..-..+...+..++++| ++ .++++.+ .++
T Consensus 88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g-~lyv~d~~~~~ 166 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG-AVFVSDGYCNS 166 (329)
T ss_dssp TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC-CEEEEECSSCC
T ss_pred CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCC-eEEEEeCCCCC
Confidence 344578899999999988888 78999999986332122221100 000123445689999999 66 7888876 699
Q ss_pred eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecC-CCEEEEEeC-CeEEEEEccCCCCceeeeeecc
Q 010256 306 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN-GRHILSRDY-MTLKLWDINMDSGPVATFQVHE 383 (514)
Q Consensus 306 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~ 383 (514)
.|++||. ++... ..+....... ....++......++++|+ +.++++... ++|++||..+ ++.+..+....
T Consensus 167 ~I~~~~~-~g~~~----~~~~~~g~~~--~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~-G~~~~~~~~~~ 238 (329)
T 3fvz_A 167 RIVQFSP-SGKFV----TQWGEESSGS--SPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDT-KEFVREIKHAS 238 (329)
T ss_dssp EEEEECT-TSCEE----EEECEECCSS--SCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTT-CCEEEEECCTT
T ss_pred eEEEEcC-CCCEE----EEeccCCCCC--CCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCC-CcEEEEEeccc
Confidence 9999994 44432 2222111000 000122245889999998 665555544 8999999986 77777664332
Q ss_pred ccccccccccccCCccceeeEEEcC------CCCEEEEEeCCCcEEEEecCCCceeeeee---cCCCcceeEEEECCCCC
Q 010256 384 HLRPKLCDLYENDSIFDKFECCLSG------DGGRVATGSYSNLFRVFGCSEGSAESTTL---EASKNPMRRQVQTPSRP 454 (514)
Q Consensus 384 ~~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~ 454 (514)
... .+..++|+| +|+.+++...+..|++|+..+++.. ..+ .++...+..++++|++.
T Consensus 239 ~~~-------------~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~-~~~~~~~~~~~~p~~ia~~~dG~ 304 (329)
T 3fvz_A 239 FGR-------------NVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEII-DVFKPVRKHFDMPHDIVASEDGT 304 (329)
T ss_dssp TTT-------------CEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEE-EEECCSSSCCSSEEEEEECTTSE
T ss_pred cCC-------------CcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEE-EEEcCCCCccCCeeEEEECCCCC
Confidence 110 133788888 3443333344568999999887543 454 46777789999999999
Q ss_pred ceeecCCCCeEEE
Q 010256 455 SRPLGSLSGVVRR 467 (514)
Q Consensus 455 ~l~s~s~d~~v~i 467 (514)
++++...++.|++
T Consensus 305 lyvad~~~~~I~~ 317 (329)
T 3fvz_A 305 VYIGDAHTNTVWK 317 (329)
T ss_dssp EEEEESSSCCEEE
T ss_pred EEEEECCCCEEEE
Confidence 8999888888888
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-13 Score=124.67 Aligned_cols=241 Identities=9% Similarity=0.024 Sum_probs=160.7
Q ss_pred ccccceEEEEEcCCCC-eEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccc
Q 010256 33 QEVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~-~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (514)
.+.....+++|+|+|+ +++++..++.|..|+..++ . ..+..+.
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~------------------------~~~~~~~----------- 68 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L------------------------SPEMHPS----------- 68 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E------------------------EEEESSC-----------
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e------------------------EEEECCC-----------
Confidence 3456788999999998 7888888999999997654 2 2233333
Q ss_pred ccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
..+.++++ +++|.++++...++.|.+||..+++.........
T Consensus 69 -~~~~~l~~--~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~----------------------------------- 110 (296)
T 3e5z_A 69 -HHQNGHCL--NKQGHLIACSHGLRRLERQREPGGEWESIADSFE----------------------------------- 110 (296)
T ss_dssp -SSEEEEEE--CTTCCEEEEETTTTEEEEECSTTCCEEEEECEET-----------------------------------
T ss_pred -CCcceeeE--CCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccC-----------------------------------
Confidence 56889999 5677777777777899999997776433211100
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEE----e-c-------------C
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS----A-D-------------D 253 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s----~-~-------------d 253 (514)
......+.+++++|+|+++++ | . .
T Consensus 111 --------------------------------------~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~ 152 (296)
T 3e5z_A 111 --------------------------------------GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPG 152 (296)
T ss_dssp --------------------------------------TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSS
T ss_pred --------------------------------------CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCC
Confidence 000123556788888887776 2 1 2
Q ss_pred CeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcC-CCcc-ccccccceeccCCC
Q 010256 254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR-QSAL-CDTHSKLFEEQEAP 331 (514)
Q Consensus 254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~-~~~~-~~~~~~~~~~~~~~ 331 (514)
+.|..++.. ..... +..+......++|+|++ +.+++.+.++.|.+||+. ++.. .. ...+.
T Consensus 153 ~~l~~~~~~--g~~~~--------~~~~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~~--~~~~~----- 214 (296)
T 3e5z_A 153 RWVFRLAPD--GTLSA--------PIRDRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETEYQ--GVHFT----- 214 (296)
T ss_dssp CEEEEECTT--SCEEE--------EECCCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEEEE--EEEEC-----
T ss_pred cEEEEECCC--CCEEE--------eecCCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCcCC--CeEee-----
Confidence 455555554 22221 22344567899999999 677777788999999997 3332 10 11111
Q ss_pred CccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEE-cCCC
Q 010256 332 GTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL-SGDG 410 (514)
Q Consensus 332 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~ 410 (514)
.+...+..++++++|+++++. ++.|.+||.. ++.+..+..+.. .. +++| +|++
T Consensus 215 -------~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~--g~~~~~~~~~~~-~~---------------~~~f~~~d~ 268 (296)
T 3e5z_A 215 -------VEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD--GDELGRVLTPQT-TS---------------NLCFGGPEG 268 (296)
T ss_dssp -------CSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT--SCEEEEEECSSC-CC---------------EEEEESTTS
T ss_pred -------CCCCCCCeEEECCCCCEEEEc-CCeEEEECCC--CCEEEEEECCCC-ce---------------eEEEECCCC
Confidence 122456789999999987777 8899999986 666766665543 22 7889 5899
Q ss_pred CEEEEEeCCCcEEEEecCCC
Q 010256 411 GRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 411 ~~l~s~~~dg~i~iwd~~~~ 430 (514)
+.|++++.+ .+.-++.++.
T Consensus 269 ~~L~v~t~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 269 RTLYMTVST-EFWSIETNVR 287 (296)
T ss_dssp CEEEEEETT-EEEEEECSCC
T ss_pred CEEEEEcCC-eEEEEEcccc
Confidence 988888775 4555555543
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-13 Score=124.29 Aligned_cols=237 Identities=9% Similarity=0.023 Sum_probs=154.6
Q ss_pred cCccCeEEEEECCCCC-EEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEE
Q 010256 231 AHDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 308 (514)
Q Consensus 231 ~h~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~ 308 (514)
.+.....+++|+|+++ +++++ .++.|..|+..++ . . .+..+...+.+++++|+| +++++...++.|.
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~-~-------~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~ 93 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--L-S-------PEMHPSHHQNGHCLNKQG-HLIACSHGLRRLE 93 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--E-E-------EEESSCSSEEEEEECTTC-CEEEEETTTTEEE
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--e-E-------EEECCCCCcceeeECCCC-cEEEEecCCCeEE
Confidence 3445678999999998 66777 8999999999854 2 2 123345678999999999 7777776778999
Q ss_pred EEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEE----Ee-----------C-CeEEEEEccCC
Q 010256 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS----RD-----------Y-MTLKLWDINMD 372 (514)
Q Consensus 309 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~----~~-----------~-~~i~iwd~~~~ 372 (514)
+||..+++.. ....... ......+..++++|+|+++++ |. + +.-.||.+...
T Consensus 94 ~~d~~~g~~~----~~~~~~~--------~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (296)
T 3e5z_A 94 RQREPGGEWE----SIADSFE--------GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD 161 (296)
T ss_dssp EECSTTCCEE----EEECEET--------TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT
T ss_pred EEcCCCCcEE----EEeeccC--------CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC
Confidence 9999777632 1111000 001135678999999998887 22 0 12245555432
Q ss_pred CCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecC-CCce-e-eeeecCCCcceeEEEE
Q 010256 373 SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS-EGSA-E-STTLEASKNPMRRQVQ 449 (514)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~-~~~~-~-~~~~~~~~~~v~~~~~ 449 (514)
..+..+..+... ...++|+|||+.|++.+.++.|++|++. ++.. . ...+..+...+..+++
T Consensus 162 -g~~~~~~~~~~~---------------~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~ 225 (296)
T 3e5z_A 162 -GTLSAPIRDRVK---------------PNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRV 225 (296)
T ss_dssp -SCEEEEECCCSS---------------EEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEE
T ss_pred -CCEEEeecCCCC---------------CccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEE
Confidence 223333222111 2279999999998777788999999987 3422 1 2233445556778999
Q ss_pred CCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEE-cCCCCEEEEEecCcEEEEe
Q 010256 450 TPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAW-HPSENSIACAASNSLYMYY 513 (514)
Q Consensus 450 ~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~-spd~~~l~~~~~~~~~i~~ 513 (514)
.++|+++++. ++.|.+++-. . ........+.. +.+++| +|+++.|.+++.++++-+.
T Consensus 226 d~~G~l~v~~--~~~v~~~~~~---g-~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~ 283 (296)
T 3e5z_A 226 DAGGLIWASA--GDGVHVLTPD---G-DELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIE 283 (296)
T ss_dssp BTTSCEEEEE--TTEEEEECTT---S-CEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEEE
T ss_pred CCCCCEEEEc--CCeEEEECCC---C-CEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEEE
Confidence 9999977776 6777773221 1 01111111334 899999 6899999999988877653
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.8e-12 Score=114.24 Aligned_cols=277 Identities=7% Similarity=-0.009 Sum_probs=182.1
Q ss_pred cccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccc
Q 010256 34 EVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (514)
Q Consensus 34 h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (514)
+...+.+++++++|+++++...++.|.+|+.. ++.. . .....+. .
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~---------------------~-~~~~~~~------------~ 57 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT---------------------E-YPLPTPD------------A 57 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE---------------------E-EECSSTT------------C
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE---------------------E-ecCCccc------------C
Confidence 34679999999999988877668899999976 3321 0 0111122 5
Q ss_pred ceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCC
Q 010256 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (514)
Q Consensus 114 ~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (514)
.+..+++ .++|.++++...++.|..|+.. ++.... ..
T Consensus 58 ~~~~i~~--~~~g~l~v~~~~~~~i~~~~~~-g~~~~~-~~--------------------------------------- 94 (299)
T 2z2n_A 58 KVMCLTI--SSDGEVWFTENAANKIGRITKK-GIIKEY-TL--------------------------------------- 94 (299)
T ss_dssp CEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEE-EC---------------------------------------
T ss_pred ceeeEEE--CCCCCEEEeCCCCCeEEEECCC-CcEEEE-eC---------------------------------------
Confidence 5888888 5677777776667888888875 321110 00
Q ss_pred CCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeec
Q 010256 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (514)
Q Consensus 194 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~ 272 (514)
......+.++++++++.++++. .++.|..||. ++... ..
T Consensus 95 ------------------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~-- 134 (299)
T 2z2n_A 95 ------------------------------------PNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR-EY-- 134 (299)
T ss_dssp ------------------------------------SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-EE--
T ss_pred ------------------------------------CCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE-Ee--
Confidence 0112356789999999888887 7889999998 33322 11
Q ss_pred cCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecC
Q 010256 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (514)
Q Consensus 273 ~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 352 (514)
........+..+++.+++ +++++...++.|..||. +++.. .+... .....+.+++++++
T Consensus 135 ----~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~-----~~~~~----------~~~~~~~~i~~~~~ 193 (299)
T 2z2n_A 135 ----ELPNKGSYPSFITLGSDN-ALWFTENQNNAIGRITE-SGDIT-----EFKIP----------TPASGPVGITKGND 193 (299)
T ss_dssp ----ECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEE-----EEECS----------STTCCEEEEEECTT
T ss_pred ----cCCCCCCCCceEEEcCCC-CEEEEeCCCCEEEEEcC-CCcEE-----EeeCC----------CCCCcceeEEECCC
Confidence 112234568999999998 77777777889999998 55432 11111 11245788999999
Q ss_pred CCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCc
Q 010256 353 GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 431 (514)
Q Consensus 353 g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 431 (514)
|++.++.. .+.|.+||. + ++.. .+..... ...+..++++++|+++++...++.|..||.. +.
T Consensus 194 g~l~v~~~~~~~i~~~~~-~-g~~~-~~~~~~~-------------~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~ 256 (299)
T 2z2n_A 194 DALWFVEIIGNKIGRITT-S-GEIT-EFKIPTP-------------NARPHAITAGAGIDLWFTEWGANKIGRLTSN-NI 256 (299)
T ss_dssp SSEEEEETTTTEEEEECT-T-CCEE-EEECSST-------------TCCEEEEEECSTTCEEEEETTTTEEEEEETT-TE
T ss_pred CCEEEEccCCceEEEECC-C-CcEE-EEECCCC-------------CCCceeEEECCCCCEEEeccCCceEEEECCC-Cc
Confidence 99777764 489999998 4 4422 2211110 0113489999999977776678899999983 43
Q ss_pred eeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 432 AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 432 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.....+..+...+..+++ +++.+.++.+.++.+++
T Consensus 257 ~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~ 291 (299)
T 2z2n_A 257 IEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKL 291 (299)
T ss_dssp EEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEE
T ss_pred eEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEE
Confidence 222223455567889999 88888777665666555
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-14 Score=137.76 Aligned_cols=217 Identities=11% Similarity=0.055 Sum_probs=125.9
Q ss_pred EEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEE-------------------EEEecCCCcEE
Q 010256 239 ISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITS-------------------AEFHPTHCNML 298 (514)
Q Consensus 239 ~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~-------------------v~~~p~~~~~l 298 (514)
+.|+|||+.|+.+ .++.|++||+.+++.. .+.. .+...... +.|+|++ +.+
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~-~~~~-------~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg-~~~ 156 (396)
T 3c5m_A 86 GFISTDERAFFYVKNELNLMKVDLETLEEQ-VIYT-------VDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT-SWE 156 (396)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTCCEE-EEEE-------CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC-SHH
T ss_pred ceECCCCCEEEEEEcCCcEEEEECCCCCcE-EEEe-------cccccCCCCCEEEeccCCccccccccccccCCCC-cce
Confidence 4577777777766 6667888887644322 2111 01111111 3456776 444
Q ss_pred EEE-----ecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec-CCCEEEEEeC-------CeEE
Q 010256 299 AYS-----SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRDY-------MTLK 365 (514)
Q Consensus 299 ~~~-----~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~~-------~~i~ 365 (514)
+.. ..+..|.+||+.+++.. . +..+...+..+.|+| +++.|+..++ ..|.
T Consensus 157 ~~~~~~~~~~~~~l~~~d~~~g~~~----~-------------~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~ 219 (396)
T 3c5m_A 157 KFAEFYHTNPTCRLIKVDIETGELE----V-------------IHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMW 219 (396)
T ss_dssp HHHHHHHTCCCEEEEEEETTTCCEE----E-------------EEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCE
T ss_pred eeeeeccCCCcceEEEEECCCCcEE----e-------------eccCCcccccceECCCCCCEEEEEecCCCCCCCceEE
Confidence 433 35668999999876532 1 112235688999999 7887766432 3678
Q ss_pred EEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCC-----CcEEEEecCCCceeeeeecCC
Q 010256 366 LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-----NLFRVFGCSEGSAESTTLEAS 440 (514)
Q Consensus 366 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~ 440 (514)
+||+.. ++ ...+..+... ..+..++|+|||++|+.++.+ +.|++||+.+++... .....
T Consensus 220 ~~d~~~-~~-~~~l~~~~~~-------------~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~ 283 (396)
T 3c5m_A 220 LVNEDG-SN-VRKIKEHAEG-------------ESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEE-VMVMP 283 (396)
T ss_dssp EEETTS-CC-CEESSCCCTT-------------EEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEE-EEECC
T ss_pred EEECCC-Cc-eeEeeccCCC-------------ccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEE-eeeCC
Confidence 888764 33 2222222100 013378999999988776543 449999998774332 11111
Q ss_pred CcceeEEEECC-CCCceeecC----------------CCCeEEEeeC--CCCCccccCCccccccc-----------ceE
Q 010256 441 KNPMRRQVQTP-SRPSRPLGS----------------LSGVVRRVKG--ADNSALDANGNAFDFSM-----------KLL 490 (514)
Q Consensus 441 ~~~v~~~~~~~-~~~~l~s~s----------------~d~~v~i~~~--~~~~~~~~~~~~~~~~~-----------~v~ 490 (514)
. .. ..|+| +++++++++ .+..+.+++. .... . ...+.. .+.
T Consensus 284 -~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~--~----l~~~~~~~~~~~~~~~~~~~ 354 (396)
T 3c5m_A 284 -P-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ--K----LCKHSTSWDVLDGDRQITHP 354 (396)
T ss_dssp -S-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC--E----EEECCCCCCCBTTBSSTTCC
T ss_pred -C-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE--E----ccCCCCccccccccccCCCC
Confidence 1 22 78999 999888754 2356766332 2211 1 111222 256
Q ss_pred EEEEcCCCCEEEEEec
Q 010256 491 HLAWHPSENSIACAAS 506 (514)
Q Consensus 491 ~~~~spd~~~l~~~~~ 506 (514)
.++|+|||+.|+.++.
T Consensus 355 ~~~~s~dg~~l~~~s~ 370 (396)
T 3c5m_A 355 HPSFTPNDDGVLFTSD 370 (396)
T ss_dssp CCEECTTSSEEEEEEC
T ss_pred CceEccCCCeEEEEec
Confidence 7899999999987763
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.7e-13 Score=125.47 Aligned_cols=282 Identities=10% Similarity=0.027 Sum_probs=158.5
Q ss_pred ccccccceEEEEEcCCCCeEEEec---------CCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCC
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGD---------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEP 101 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 101 (514)
++.....+..+++ ||+++|... .++.|.+|++.+++.. .+
T Consensus 10 ~l~~~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~------------------------~l----- 58 (347)
T 2gop_A 10 TFAKFAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR------------------------FI----- 58 (347)
T ss_dssp CCCCSCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE------------------------EE-----
T ss_pred cceeeEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE------------------------Ec-----
Confidence 3344567888888 899888753 2567889998765421 11
Q ss_pred ccccccccccccceeEEEEeeCCCCcEEEEeeCC---C--eEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCc
Q 010256 102 EFDYLKSLEIEEKINKIRWCQSANSALYLLSTND---K--TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIP 176 (514)
Q Consensus 102 ~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d---~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 176 (514)
..+..++| +++|++|+.++.+ + .|.+|++.+++...+.... . +. .
T Consensus 59 -----------~~~~~~~~--SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~---------~-~~-------~ 108 (347)
T 2gop_A 59 -----------ENATMPRI--SPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK---------N-IR-------S 108 (347)
T ss_dssp -----------ESCEEEEE--CTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES---------E-EE-------E
T ss_pred -----------ccCCCeEE--CCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC---------C-cc-------c
Confidence 22778899 6788888877543 3 4777888887765544322 1 22 5
Q ss_pred eeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeE
Q 010256 177 KSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRI 256 (514)
Q Consensus 177 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i 256 (514)
+.|+|||+.+ +....+. .. ......+..+.|..++.-+.......|
T Consensus 109 ~~wspdg~~l------------~~~~~~~-----------~~-----------~~~~~~~~~~~~~~~g~~~~~~~~~~l 154 (347)
T 2gop_A 109 LEWNEDSRKL------------LIVGFKR-----------RE-----------DEDFIFEDDVPAWFDDLGFFDGEKTTF 154 (347)
T ss_dssp EEECTTSSEE------------EEEEECC-----------CC--------------------CCCC---------CEEEE
T ss_pred eeECCCCCEE------------EEEEccC-----------CC-----------cCCcEEEcccceeecCcccccCccceE
Confidence 6677777655 2111000 00 000001112222223322222234679
Q ss_pred EEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCC-------eEEEEEcCCCccccccccceeccC
Q 010256 257 NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG-------SIRLIDMRQSALCDTHSKLFEEQE 329 (514)
Q Consensus 257 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg-------~i~~wd~~~~~~~~~~~~~~~~~~ 329 (514)
.+||+.+++....+ .. . .+..+.|+|+| +++++..++ ...||.+.+++. ..
T Consensus 155 ~~~d~~~~~~~~~l--------~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~~-----~~----- 212 (347)
T 2gop_A 155 WIFDTESEEVIEEF--------EK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGKE-----EK----- 212 (347)
T ss_dssp EEEETTTTEEEEEE--------EE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTEE-----EE-----
T ss_pred EEEECCCCeEEeee--------cC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCCce-----EE-----
Confidence 99999855431222 22 2 67889999997 666665542 345554443332 11
Q ss_pred CCCccceeeccccceeEEEEecCCCEEEEEe-C--------CeEEEEEccCCCCceeeeeeccccccccccccccCCccc
Q 010256 330 APGTRSFFTEIIASISDIKFARNGRHILSRD-Y--------MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFD 400 (514)
Q Consensus 330 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (514)
+..+ ..+..+ +|+|+.|+..+ + ..|.+|| . ++.......+...
T Consensus 213 -------l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~-~~~~~l~~~~~~~--------------- 264 (347)
T 2gop_A 213 -------MFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--G-KEVMGILDEVDRG--------------- 264 (347)
T ss_dssp -------EEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--S-SCEEESSTTCCSE---------------
T ss_pred -------eccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--C-CceEeccccCCcc---------------
Confidence 1122 334444 99999888753 2 3677777 3 4433322222221
Q ss_pred eee-EEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCe
Q 010256 401 KFE-CCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGV 464 (514)
Q Consensus 401 v~~-~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~ 464 (514)
+.. +.|+ |+ ++++++.++.++|| +.++ .. ..+..+...+..+.++| .++++++.++.
T Consensus 265 ~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g-~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~ 322 (347)
T 2gop_A 265 VGQAKIKD-GK-VYFTLFEEGSVNLY-IWDG-EI-KPIAKGRHWIMGFDVDE--IVVYLKETATR 322 (347)
T ss_dssp EEEEEEET-TE-EEEEEEETTEEEEE-EESS-SE-EEEECSSSEEEEEEESS--SEEEEEECSSS
T ss_pred cCCccEEc-Cc-EEEEEecCCcEEEE-EcCC-ce-EEEecCCCeEEeeeeeC--cEEEEEcCCCC
Confidence 234 8899 88 88999999999999 8754 33 33444577889999999 66666665554
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-11 Score=110.73 Aligned_cols=233 Identities=8% Similarity=-0.029 Sum_probs=155.9
Q ss_pred cCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEc
Q 010256 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~ 312 (514)
..+.++++++++.++++. .++.|..||.. ++ ...+ .+......+.++++.|++ .++++...++.|..||.
T Consensus 57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-~~~~------~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~ 127 (299)
T 2z2n_A 57 AKVMCLTISSDGEVWFTENAANKIGRITKK-GI-IKEY------TLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD 127 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-EEEE------ECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT
T ss_pred CceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc-EEEE------eCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC
Confidence 457789999999988887 68999999986 22 2111 112234578999999998 77777777889999998
Q ss_pred CCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeecccccccccc
Q 010256 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCD 391 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 391 (514)
+++.. .+.. ......+..++++++|+++++... +.|..||. . ++... +.....
T Consensus 128 -~g~~~-----~~~~----------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~-g~~~~-~~~~~~------- 181 (299)
T 2z2n_A 128 -DGKIR-----EYEL----------PNKGSYPSFITLGSDNALWFTENQNNAIGRITE-S-GDITE-FKIPTP------- 181 (299)
T ss_dssp -TCCEE-----EEEC----------SSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-T-CCEEE-EECSST-------
T ss_pred -CCCEE-----EecC----------CCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-C-CcEEE-eeCCCC-------
Confidence 54421 1111 111246889999999988887654 89999998 4 44332 211110
Q ss_pred ccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCC
Q 010256 392 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGA 471 (514)
Q Consensus 392 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~ 471 (514)
...+..++++++|+++++...++.|.+||. ++......+..+...+..+++.++++++++...++.|..++..
T Consensus 182 ------~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 182 ------ASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp ------TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred ------CCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence 011337999999998777767889999999 5543322344455678899999999987777667777774321
Q ss_pred -CCCccccCCcccccccceEEEEEcCCCCEEEEEecCcEEEEe
Q 010256 472 -DNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 472 -~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~i~~ 513 (514)
... .+. .......+.++++ +++++.++...+++..|.
T Consensus 255 g~~~--~~~--~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~ 292 (299)
T 2z2n_A 255 NIIE--EYP--IQIKSAEPHGICF-DGETIWFAMECDKIGKLT 292 (299)
T ss_dssp TEEE--EEE--CSSSSCCEEEEEE-CSSCEEEEETTTEEEEEE
T ss_pred CceE--EEe--CCCCCCccceEEe-cCCCEEEEecCCcEEEEE
Confidence 111 010 1123467899999 999887776677777764
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.1e-13 Score=138.77 Aligned_cols=161 Identities=10% Similarity=0.055 Sum_probs=101.1
Q ss_pred CccCeEEEEECCCCCEEEEe-c-----CCeEEEEeccC------CCceeeeeccCCCcccccCCceEEEEEecCCCcEEE
Q 010256 232 HDYHINSISNNSDGETFISA-D-----DLRINLWNLEI------SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA 299 (514)
Q Consensus 232 h~~~v~~~~~~~~~~~l~s~-~-----d~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~ 299 (514)
|...+..+.|+|||++|+.+ . +..|++||+.+ +..... .+..+...+.. .|+|+| ..|+
T Consensus 231 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-------~l~~~~~~~~~-~~s~dg-~~l~ 301 (710)
T 2xdw_A 231 EPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV-------KLIDNFEGEYD-YVTNEG-TVFT 301 (710)
T ss_dssp CTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE-------EEECSSSSCEE-EEEEET-TEEE
T ss_pred CCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE-------EeeCCCCcEEE-EEeccC-CEEE
Confidence 44557789999999998875 3 57899999985 321121 22334444444 488888 5555
Q ss_pred EEec-C---CeEEEEEcCCCccccccccceeccCCCCccceeeccc--cceeEEEEecCCCEEEEEe-CC--eEEEEEcc
Q 010256 300 YSSS-K---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII--ASISDIKFARNGRHILSRD-YM--TLKLWDIN 370 (514)
Q Consensus 300 ~~~~-d---g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~s~~g~~l~~~~-~~--~i~iwd~~ 370 (514)
..+. + +.|.+||+.++... ..+.+ ..|. ..+..++|++++.++++.. ++ .|.+||+.
T Consensus 302 ~~s~~~~~~~~l~~~d~~~~~~~--~~~~l------------~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~ 367 (710)
T 2xdw_A 302 FKTNRHSPNYRLINIDFTDPEES--KWKVL------------VPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLA 367 (710)
T ss_dssp EEECTTCTTCEEEEEETTSCCGG--GCEEE------------ECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT
T ss_pred EEECCCCCCCEEEEEeCCCCCcc--cceec------------cCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECC
Confidence 4444 3 36999998775320 01111 1121 2577899997777777754 45 56677775
Q ss_pred CCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEE-e---CCCcEEEEecCCCc
Q 010256 371 MDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-S---YSNLFRVFGCSEGS 431 (514)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~---~dg~i~iwd~~~~~ 431 (514)
. ++.+..+..+... +..++++|+++.|+.. + ..+.|++||+.+++
T Consensus 368 ~-g~~~~~l~~~~~~---------------v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 368 T-GALLKIFPLEVGS---------------VVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp T-CCEEEEECCCSSE---------------EEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred C-CCEEEecCCCCce---------------EEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 4 6666666554322 3378899999766533 2 34789999998775
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-13 Score=139.40 Aligned_cols=251 Identities=10% Similarity=0.001 Sum_probs=151.0
Q ss_pred ccccceEEEEEcCCCCeEE-----EecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccc
Q 010256 33 QEVDIISAIEFDKSGDHLA-----TGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~-----tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (514)
+|...+.+++|||||++|| .|+.+..|++||+.+++... ...+..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~---------------------~~~~~~--------- 167 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK---------------------VDVIEG--------- 167 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS---------------------SCCBSC---------
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC---------------------CcccCc---------
Confidence 4556799999999999999 44556789999998876310 000110
Q ss_pred ccccccceeEEEEeeCCCCcEEEEeeCCCe-------------EEEEEcCccEEEEEeeccCCCccccCCcceecccccC
Q 010256 108 SLEIEEKINKIRWCQSANSALYLLSTNDKT-------------IKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSA 174 (514)
Q Consensus 108 ~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~-------------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 174 (514)
.....++| ++||+.|+.++.|.. |++|++.+++...
T Consensus 168 -----~~~~~~~w--spDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~------------------------ 216 (695)
T 2bkl_A 168 -----GKYATPKW--TPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKD------------------------ 216 (695)
T ss_dssp -----CTTCCCEE--CTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGC------------------------
T ss_pred -----ccccceEE--ecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhc------------------------
Confidence 11257889 678888998887765 7777765542100
Q ss_pred CceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cC
Q 010256 175 IPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD 253 (514)
Q Consensus 175 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d 253 (514)
..++. ...|...+..+.|+|||++|+.+ .+
T Consensus 217 --------------------------------~lv~~-----------------~~~~~~~~~~~~~SpDG~~l~~~~~~ 247 (695)
T 2bkl_A 217 --------------------------------TVVHE-----------------RTGDPTTFLQSDLSRDGKYLFVYILR 247 (695)
T ss_dssp --------------------------------EEEEC-----------------CCCCTTCEEEEEECTTSCCEEEEEEE
T ss_pred --------------------------------eEEEe-----------------cCCCCEEEEEEEECCCCCEEEEEEeC
Confidence 00000 12344567889999999998876 44
Q ss_pred C----eEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEe---cCCeEEEEEcCCCcccccccccee
Q 010256 254 L----RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS---SKGSIRLIDMRQSALCDTHSKLFE 326 (514)
Q Consensus 254 ~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~---~dg~i~~wd~~~~~~~~~~~~~~~ 326 (514)
+ .|.+|+..++. .. .+..+...+....+ +++ .+++... .++.|.+||+.++.... ...+
T Consensus 248 ~~~~~~l~~~~~~~~~-~~--------~l~~~~~~~~~~~~-~~g-~l~~~s~~~~~~~~l~~~d~~~~~~~~--~~~l- 313 (695)
T 2bkl_A 248 GWSENDVYWKRPGEKD-FR--------LLVKGVGAKYEVHA-WKD-RFYVLTDEGAPRQRVFEVDPAKPARAS--WKEI- 313 (695)
T ss_dssp TTTEEEEEEECTTCSS-CE--------EEEECSSCCEEEEE-ETT-EEEEEECTTCTTCEEEEEBTTBCSGGG--CEEE-
T ss_pred CCCceEEEEEcCCCCc-eE--------EeecCCCceEEEEe-cCC-cEEEEECCCCCCCEEEEEeCCCCCccC--CeEE-
Confidence 4 56666554322 22 22334445556656 677 4444444 25789999987754210 0111
Q ss_pred ccCCCCccceeecc-ccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeE
Q 010256 327 EQEAPGTRSFFTEI-IASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC 404 (514)
Q Consensus 327 ~~~~~~~~~~~~~~-~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 404 (514)
+..+ ...+..++|+ ++.++++.. ++..+||.+...++....+..+... .+..+
T Consensus 314 ----------~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~--------------~v~~~ 368 (695)
T 2bkl_A 314 ----------VPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVG--------------AASNL 368 (695)
T ss_dssp ----------ECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSS--------------EECCC
T ss_pred ----------ecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCe--------------EEEEe
Confidence 1111 2457788888 666666654 5777777665335545444433111 12267
Q ss_pred EEcCCCCEEEEE----eCCCcEEEEecCCCce
Q 010256 405 CLSGDGGRVATG----SYSNLFRVFGCSEGSA 432 (514)
Q Consensus 405 ~~s~~~~~l~s~----~~dg~i~iwd~~~~~~ 432 (514)
+++|+++.|+.. ...+.|++||+.+++.
T Consensus 369 ~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 369 MGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp BSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred ecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 888999877632 2347899999987753
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-11 Score=119.54 Aligned_cols=300 Identities=10% Similarity=0.050 Sum_probs=186.7
Q ss_pred ccccceEEEEEcCCCCeEEEecCCCeEEEEEec--CCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERT--DTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
.....+..+.|+|||++|++++.|+.|.+||+. +.+. ...+...
T Consensus 194 ~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~-----------------------v~~i~~G----------- 239 (567)
T 1qks_A 194 DTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT-----------------------VAEIKIG----------- 239 (567)
T ss_dssp ECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE-----------------------EEEEECC-----------
T ss_pred eCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE-----------------------eEEEecC-----------
Confidence 334467799999999999999999999999985 4332 2222221
Q ss_pred cccceeEEEEee--CCCCcEEEEee-CCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccc
Q 010256 111 IEEKINKIRWCQ--SANSALYLLST-NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (514)
Q Consensus 111 ~~~~v~~i~~~~--~~~~~~l~s~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 187 (514)
.....++|++ .++|++++++. .+++|.++|..+.+........... .++.
T Consensus 240 --~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~----------------------~~~~--- 292 (567)
T 1qks_A 240 --SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT----------------------YDEQ--- 292 (567)
T ss_dssp --SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEEC----------------------TTTC---
T ss_pred --CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccc----------------------cccc---
Confidence 3357888841 05788888765 5699999999888766544322000 0000
Q ss_pred cccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCc-cCeEEEEECCCCCEEEEe--cCCeEEEEeccCC
Q 010256 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHD-YHINSISNNSDGETFISA--DDLRINLWNLEIS 264 (514)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~ 264 (514)
..|. ..+..+..++++..++.. .+|.|.++|....
T Consensus 293 ------------------------------------------~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~ 330 (567)
T 1qks_A 293 ------------------------------------------EYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDL 330 (567)
T ss_dssp ------------------------------------------CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCS
T ss_pred ------------------------------------------cccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCC
Confidence 0111 256678888887666555 7899999998754
Q ss_pred CceeeeeccCCCcccccCCceEEEEEecCCCcEEEE-EecCCeEEEEEcCCCccccccccceec-cCCCCccceeecccc
Q 010256 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAY-SSSKGSIRLIDMRQSALCDTHSKLFEE-QEAPGTRSFFTEIIA 342 (514)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~-~~~dg~i~~wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 342 (514)
+.. .+. .+ ........+.|+|++ ++|++ ...++.|.++|+.++++. ..++. ... .|.+
T Consensus 331 ~~~-~v~-----~i-~~~~~~~d~~~~pdg-r~~~va~~~sn~V~ViD~~t~kl~----~~i~vgg~~--------Phpg 390 (567)
T 1qks_A 331 NNL-KTT-----EI-SAERFLHDGGLDGSH-RYFITAANARNKLVVIDTKEGKLV----AIEDTGGQT--------PHPG 390 (567)
T ss_dssp SEE-EEE-----EE-ECCSSEEEEEECTTS-CEEEEEEGGGTEEEEEETTTTEEE----EEEECSSSS--------BCCT
T ss_pred ccc-eee-----ee-eccccccCceECCCC-CEEEEEeCCCCeEEEEECCCCcEE----EEEeccCcC--------CCCc
Confidence 322 111 11 123456788999999 55554 446889999999998753 22222 111 1211
Q ss_pred ceeEEEEecCCC-EEEEE--eCCeEEEEEccCC------CCceeeeeeccccccccccccccCCccceeeEEEcCCCCEE
Q 010256 343 SISDIKFARNGR-HILSR--DYMTLKLWDINMD------SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 413 (514)
Q Consensus 343 ~i~~~~~s~~g~-~l~~~--~~~~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 413 (514)
.-..+ ++|++. ..+++ ++++|.++|.... .+.+.++...... . ..+..+|++++|
T Consensus 391 ~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g-----------~----~~i~~~p~~~~l 454 (567)
T 1qks_A 391 RGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGG-----------S----LFIKTHPNSQYL 454 (567)
T ss_dssp TCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC-----------C----CCEECCTTCSEE
T ss_pred cceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCC-----------C----EEEEeCCCCCeE
Confidence 11112 578744 44555 3489999998852 2344555443211 0 147889999998
Q ss_pred EEEeC-------CCcEEEEecCCC-----ceeeeeec--------CCCcceeEEEECCCCCceeecC-----CCCeEEEe
Q 010256 414 ATGSY-------SNLFRVFGCSEG-----SAESTTLE--------ASKNPMRRQVQTPSRPSRPLGS-----LSGVVRRV 468 (514)
Q Consensus 414 ~s~~~-------dg~i~iwd~~~~-----~~~~~~~~--------~~~~~v~~~~~~~~~~~l~s~s-----~d~~v~i~ 468 (514)
..... .++|.++|+.+. ......+. .-...+..+.|+|+|+++..+. .++.|.++
T Consensus 455 ~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~ 534 (567)
T 1qks_A 455 YVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVV 534 (567)
T ss_dssp EEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEE
T ss_pred EEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEE
Confidence 87652 469999999865 22212232 1245678999999999876653 36777775
Q ss_pred eCC
Q 010256 469 KGA 471 (514)
Q Consensus 469 ~~~ 471 (514)
+..
T Consensus 535 D~~ 537 (567)
T 1qks_A 535 DDK 537 (567)
T ss_dssp ETT
T ss_pred ECC
Confidence 443
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.2e-13 Score=136.95 Aligned_cols=239 Identities=8% Similarity=-0.021 Sum_probs=149.6
Q ss_pred ccCccCeEEEEECCCCCEEEE-----e-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEec
Q 010256 230 HAHDYHINSISNNSDGETFIS-----A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS 303 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~~~l~s-----~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~ 303 (514)
.+|...+..++|||||++|+. | ++.+|++||+.+++.... ..+... ....++|+||| +.|+.++.
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~------~~~~~~--~~~~~~wspDg-~~l~~~~~ 187 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV------DVIEGG--KYATPKWTPDS-KGFYYEWL 187 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS------CCBSCC--TTCCCEECTTS-SEEEEEEC
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC------cccCcc--cccceEEecCC-CEEEEEEe
Confidence 345567889999999999994 3 357899999997653200 011111 12678999999 78888888
Q ss_pred CCe-------------EEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CC----eEE
Q 010256 304 KGS-------------IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YM----TLK 365 (514)
Q Consensus 304 dg~-------------i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~----~i~ 365 (514)
|.. |++|++.++..... ..+.. ..+...+.++.|||||++|+..+ ++ .|.
T Consensus 188 d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~--lv~~~----------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~ 255 (695)
T 2bkl_A 188 PTDPSIKVDERPGYTTIRYHTLGTEPSKDT--VVHER----------TGDPTTFLQSDLSRDGKYLFVYILRGWSENDVY 255 (695)
T ss_dssp CCCTTSCGGGGGGGCEEEEEETTSCGGGCE--EEECC----------CCCTTCEEEEEECTTSCCEEEEEEETTTEEEEE
T ss_pred cCCCCCccccCCCCCEEEEEECCCCchhce--EEEec----------CCCCEEEEEEEECCCCCEEEEEEeCCCCceEEE
Confidence 765 99999987753211 11111 11234688999999999988753 23 566
Q ss_pred EEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe---CCCcEEEEecCCCce--eeeeecCC
Q 010256 366 LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS---YSNLFRVFGCSEGSA--ESTTLEAS 440 (514)
Q Consensus 366 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~---~dg~i~iwd~~~~~~--~~~~~~~~ 440 (514)
+|+.. ......+..+.... ....+ ++|++++... .++.|++||+.++.. ....+..+
T Consensus 256 ~~~~~--~~~~~~l~~~~~~~---------------~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~ 317 (695)
T 2bkl_A 256 WKRPG--EKDFRLLVKGVGAK---------------YEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPED 317 (695)
T ss_dssp EECTT--CSSCEEEEECSSCC---------------EEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCC
T ss_pred EEcCC--CCceEEeecCCCce---------------EEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCC
Confidence 66543 23444454443221 14555 5666444443 257899999987642 12233333
Q ss_pred -CcceeEEEECCCCCceeecCCCCeEEE--ee--CCCCCccccCCcccccccceEEEEEcCCCCEEEEEec-----CcEE
Q 010256 441 -KNPMRRQVQTPSRPSRPLGSLSGVVRR--VK--GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS-----NSLY 510 (514)
Q Consensus 441 -~~~v~~~~~~~~~~~l~s~s~d~~v~i--~~--~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~-----~~~~ 510 (514)
...+..+.++ ++.++++...|+..++ ++ +.... .+. ......|..++++||++.|+.... ..++
T Consensus 318 ~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~--~l~---~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~ 391 (695)
T 2bkl_A 318 SSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVR--TVQ---LPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIY 391 (695)
T ss_dssp SSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEE--ECC---CSSSSEECCCBSCTTCSEEEEEEEETTEEEEEE
T ss_pred CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeE--Eec---CCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEE
Confidence 4567778887 7788899999999888 22 22111 111 112566788899999988774432 3566
Q ss_pred EEe
Q 010256 511 MYY 513 (514)
Q Consensus 511 i~~ 513 (514)
+|.
T Consensus 392 ~~d 394 (695)
T 2bkl_A 392 KTS 394 (695)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=4.6e-13 Score=136.27 Aligned_cols=241 Identities=8% Similarity=-0.048 Sum_probs=156.7
Q ss_pred ccCccCeEEEEECCCCCEEEEe-c-CC----eEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEec
Q 010256 230 HAHDYHINSISNNSDGETFISA-D-DL----RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS 303 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~~~l~s~-~-d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~ 303 (514)
.+|...+..++|+|||++|+.+ + +| .|++||+.+++..... +. ...+..++|+||| +.|+.++.
T Consensus 121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~-------~~--~~~~~~~~wspDg-~~l~~~~~ 190 (710)
T 2xdw_A 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-------LE--RVKFSCMAWTHDG-KGMFYNAY 190 (710)
T ss_dssp TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-------EE--EECSCCEEECTTS-SEEEEEEC
T ss_pred cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccc-------cc--CcccceEEEEeCC-CEEEEEEE
Confidence 3454567899999999999976 3 33 8999999866543211 11 1225679999999 78888877
Q ss_pred CCe----------------EEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe------C
Q 010256 304 KGS----------------IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD------Y 361 (514)
Q Consensus 304 dg~----------------i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~------~ 361 (514)
++. |++|++.++..... ..+... .|...+..+.|+|||++|+... +
T Consensus 191 ~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~--~v~~~~----------~~~~~~~~~~~SpDg~~l~~~~~~~~~~~ 258 (710)
T 2xdw_A 191 PQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDI--LCAEFP----------DEPKWMGGAELSDDGRYVLLSIREGCDPV 258 (710)
T ss_dssp CCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCE--EEECCT----------TCTTCEEEEEECTTSCEEEEEEECSSSSC
T ss_pred CCccccccccccccCCCCEEEEEECCCCcccce--EEeccC----------CCCeEEEEEEEcCCCCEEEEEEEccCCCc
Confidence 665 99999987653211 111111 1224578899999999988742 3
Q ss_pred CeEEEEEccC------CCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCC----CcEEEEecCCCc
Q 010256 362 MTLKLWDINM------DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS----NLFRVFGCSEGS 431 (514)
Q Consensus 362 ~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~i~iwd~~~~~ 431 (514)
..|++||+.. .......+..+.... ...|+|+|+.|+..+.+ +.|.+||+.++.
T Consensus 259 ~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 322 (710)
T 2xdw_A 259 NRLWYCDLQQESNGITGILKWVKLIDNFEGE----------------YDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPE 322 (710)
T ss_dssp CEEEEEEGGGSSSSSCSSCCCEEEECSSSSC----------------EEEEEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred cEEEEEECcccccccCCccceEEeeCCCCcE----------------EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence 6899999974 222345554443321 23588999987766543 369999998764
Q ss_pred e-eeeeecCCCc--ceeEEEECCCCCceeecCCCCeEEE--eeC--CCCCccccCCcccccccceEEEEEcCCCCEEEEE
Q 010256 432 A-ESTTLEASKN--PMRRQVQTPSRPSRPLGSLSGVVRR--VKG--ADNSALDANGNAFDFSMKLLHLAWHPSENSIACA 504 (514)
Q Consensus 432 ~-~~~~~~~~~~--~v~~~~~~~~~~~l~s~s~d~~v~i--~~~--~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~ 504 (514)
. ....+..|.. .+..+.+++++.++++...|+..++ ++- .+.. ..+. .+...|..++++|+++.|+..
T Consensus 323 ~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~-~~l~----~~~~~v~~~~~s~d~~~l~~~ 397 (710)
T 2xdw_A 323 ESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALL-KIFP----LEVGSVVGYSGQKKDTEIFYQ 397 (710)
T ss_dssp GGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEE-EEEC----CCSSEEEEEECCTTCSEEEEE
T ss_pred cccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEE-EecC----CCCceEEEEecCCCCCEEEEE
Confidence 2 1234444543 6778888888889999999997776 321 1111 0111 135678899999999877744
Q ss_pred e-----cCcEEEEe
Q 010256 505 A-----SNSLYMYY 513 (514)
Q Consensus 505 ~-----~~~~~i~~ 513 (514)
. ...+++|.
T Consensus 398 ~ss~~~P~~i~~~d 411 (710)
T 2xdw_A 398 FTSFLSPGIIYHCD 411 (710)
T ss_dssp EECSSCCCEEEEEE
T ss_pred EeCCCCCCEEEEEE
Confidence 3 23566654
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-12 Score=120.38 Aligned_cols=209 Identities=11% Similarity=0.041 Sum_probs=132.6
Q ss_pred CeEEEEECCCCCEEEEe-cC---Ce--EEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC----
Q 010256 235 HINSISNNSDGETFISA-DD---LR--INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---- 304 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~-~d---~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d---- 304 (514)
.+..++|+|||+.|+.. .+ +. |.+|++.+++ ...+ ..+.. +..++|+|++ +.|+.++.+
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~-~~~l--------~~~~~-~~~~~wspdg-~~l~~~~~~~~~~ 128 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLS-SKKI--------LEAKN-IRSLEWNEDS-RKLLIVGFKRRED 128 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTE-EEEE--------EEESE-EEEEEECTTS-SEEEEEEECCCC-
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCc-eEEE--------EcCCC-ccceeECCCC-CEEEEEEccCCCc
Confidence 45678999999988876 32 44 7777877443 2222 12233 8999999999 777776632
Q ss_pred -----------------------CeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC
Q 010256 305 -----------------------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY 361 (514)
Q Consensus 305 -----------------------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 361 (514)
..|.+||+.+++.. +. +.. . .+..++|+|+| +++++..
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~----~~------------l~~-~-~~~~~~~spdg-~~~~~~~ 189 (347)
T 2gop_A 129 EDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI----EE------------FEK-P-RFSSGIWHRDK-IVVNVPH 189 (347)
T ss_dssp --------CCCC---------CEEEEEEEETTTTEEE----EE------------EEE-E-TTCEEEEETTE-EEEEEEC
T ss_pred CCcEEEcccceeecCcccccCccceEEEEECCCCeEE----ee------------ecC-C-CcccccCCCCe-EEEEEec
Confidence 56888998876531 11 111 1 57789999999 7776532
Q ss_pred -C-------eEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCC--------CcEEEE
Q 010256 362 -M-------TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS--------NLFRVF 425 (514)
Q Consensus 362 -~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d--------g~i~iw 425 (514)
. ...||.+.. ++ ...+..+ .. ...++|||++|+.++.+ ..|++|
T Consensus 190 ~~~~~~~~~~~~l~~~d~-~~-~~~l~~~-~~-----------------~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~ 249 (347)
T 2gop_A 190 REIIPQYFKFWDIYIWED-GK-EEKMFEK-VS-----------------FYAVDSDGERILLYGKPEKKYMSEHNKLYIY 249 (347)
T ss_dssp CCSSCCSSCCEEEEEEET-TE-EEEEEEE-ES-----------------EEEEEECSSCEEEEECCSSSCCCSSCEEEEE
T ss_pred ccccccccccccEEEeCC-Cc-eEEeccC-cc-----------------eeeECCCCCEEEEEEccccCCccccceEEEE
Confidence 1 445555542 43 3333322 11 22349999988877644 368888
Q ss_pred ecCCCceeeeeecCCCcceeE-EEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEE
Q 010256 426 GCSEGSAESTTLEASKNPMRR-QVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACA 504 (514)
Q Consensus 426 d~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~ 504 (514)
| ++ ........+...+.. +.|+ ++ ++++++.++.+++. -. .. .. .....+...|.+++|+| .+++++
T Consensus 250 d--~~-~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~--~g-~~-~~~~~~~~~v~~~~~s~--~~~~~~ 317 (347)
T 2gop_A 250 D--GK-EVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW--DG-EI-KPIAKGRHWIMGFDVDE--IVVYLK 317 (347)
T ss_dssp C--SS-CEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE--SS-SE-EEEECSSSEEEEEEESS--SEEEEE
T ss_pred C--CC-ceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec--CC-ce-EEEecCCCeEEeeeeeC--cEEEEE
Confidence 8 44 333445566777886 8999 88 99999999988883 11 11 11 11223467889999999 555555
Q ss_pred e
Q 010256 505 A 505 (514)
Q Consensus 505 ~ 505 (514)
+
T Consensus 318 ~ 318 (347)
T 2gop_A 318 E 318 (347)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2.7e-12 Score=114.11 Aligned_cols=238 Identities=8% Similarity=0.024 Sum_probs=154.0
Q ss_pred ceEEEEEcCCCCeEE-EecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccce
Q 010256 37 IISAIEFDKSGDHLA-TGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (514)
Q Consensus 37 ~V~~~~~s~~g~~l~-tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (514)
...+++++++|++++ +...++.|.+|+..+.... .....+. ..+
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~-----------------------~~~~~~~------------~~p 69 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT-----------------------VLPFNGL------------YQP 69 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----E-----------------------ECCCCSC------------CSC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccc-----------------------eEeeCCc------------CCc
Confidence 788999999999777 5467889999986543321 0001111 346
Q ss_pred eEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCC
Q 010256 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (514)
Q Consensus 116 ~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (514)
.++++ .++|.++++.. ++.|.+||......... .
T Consensus 70 ~~i~~--~~~g~l~v~~~-~~~i~~~d~~~~~~~~~---~---------------------------------------- 103 (270)
T 1rwi_B 70 QGLAV--DGAGTVYVTDF-NNRVVTLAAGSNNQTVL---P---------------------------------------- 103 (270)
T ss_dssp CCEEE--CTTCCEEEEET-TTEEEEECTTCSCCEEC---C----------------------------------------
T ss_pred ceeEE--CCCCCEEEEcC-CCEEEEEeCCCceEeee---e----------------------------------------
Confidence 77888 55666555555 88899998765421100 0
Q ss_pred CcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccC
Q 010256 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVK 274 (514)
Q Consensus 196 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~ 274 (514)
......+.+++++++++++++. .++.|.+|+..+......
T Consensus 104 ----------------------------------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~----- 144 (270)
T 1rwi_B 104 ----------------------------------FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL----- 144 (270)
T ss_dssp ----------------------------------CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC-----
T ss_pred ----------------------------------cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee-----
Confidence 0111346789999999988877 788999997653322210
Q ss_pred CCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCC
Q 010256 275 PANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR 354 (514)
Q Consensus 275 ~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 354 (514)
.......+.+++++|++ +++++...++.|.+||......... . ..+...+.+++++++|.
T Consensus 145 ---~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~~~-----~-----------~~~~~~p~~i~~d~~g~ 204 (270)
T 1rwi_B 145 ---PFTGLNDPDGVAVDNSG-NVYVTDTDNNRVVKLEAESNNQVVL-----P-----------FTDITAPWGIAVDEAGT 204 (270)
T ss_dssp ---CCCSCCSCCCEEECTTC-CEEEEEGGGTEEEEECTTTCCEEEC-----C-----------CSSCCSEEEEEECTTCC
T ss_pred ---ccccCCCceeEEEeCCC-CEEEEECCCCEEEEEecCCCceEee-----c-----------ccCCCCceEEEECCCCC
Confidence 11123457889999998 7777777788999999876543210 0 01114578899999997
Q ss_pred EEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 355 HILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 355 ~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
++++.. ++.|.+||... ... ...... . ......++++++|+++++...+++|+++++...
T Consensus 205 l~v~~~~~~~v~~~~~~~-~~~-~~~~~~-~-------------~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 205 VYVTEHNTNQVVKLLAGS-TTS-TVLPFT-G-------------LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EEEEETTTSCEEEECTTC-SCC-EECCCC-S-------------CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred EEEEECCCCcEEEEcCCC-Ccc-eeeccC-C-------------CCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 777664 48899999864 222 221110 0 011348999999998888889999999998754
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.54 E-value=9.6e-11 Score=105.72 Aligned_cols=270 Identities=9% Similarity=0.012 Sum_probs=176.7
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccc
Q 010256 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (514)
...+.+++++++|+++++...++.|.+|+.. ++.. . ..+..+. ..
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~---------------------~-~~~~~~~------------~~ 63 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK---------------------E-FEVPTPD------------AK 63 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE---------------------E-EECSSTT------------CC
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE---------------------E-EECCCCC------------Cc
Confidence 4578999999999988887778999999976 3321 0 0111111 45
Q ss_pred eeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCC
Q 010256 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (514)
Q Consensus 115 v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (514)
+..+++ .+++.++++...++.|..||.. ++.... ..
T Consensus 64 ~~~i~~--~~~g~l~v~~~~~~~v~~~d~~-g~~~~~-~~---------------------------------------- 99 (300)
T 2qc5_A 64 VMCLIV--SSLGDIWFTENGANKIGKLSKK-GGFTEY-PL---------------------------------------- 99 (300)
T ss_dssp EEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEE-EC----------------------------------------
T ss_pred ceeEEE--CCCCCEEEEecCCCeEEEECCC-CCeEEe-cC----------------------------------------
Confidence 788888 5677777666667888888876 442211 00
Q ss_pred CCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeecc
Q 010256 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 273 (514)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~ 273 (514)
......+.+++++++++++++. .++.|..+|.. ++.. ..
T Consensus 100 -----------------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~--- 139 (300)
T 2qc5_A 100 -----------------------------------PQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EY--- 139 (300)
T ss_dssp -----------------------------------SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EE---
T ss_pred -----------------------------------CCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-Ec---
Confidence 0011346789999999988887 68899999987 3322 21
Q ss_pred CCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCC
Q 010256 274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (514)
Q Consensus 274 ~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 353 (514)
.+......+..+++.+++ +++++...++.|..||. +++.. .+.. ..+...+..++++++|
T Consensus 140 ---~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~~-----~~~~----------~~~~~~~~~i~~d~~g 199 (300)
T 2qc5_A 140 ---DLPNKGSYPAFITLGSDN-ALWFTENQNNSIGRITN-TGKLE-----EYPL----------PTNAAAPVGITSGNDG 199 (300)
T ss_dssp ---ECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCEE-----EEEC----------SSTTCCEEEEEECTTS
T ss_pred ---cCCCCCCCceeEEECCCC-CEEEEecCCCeEEEECC-CCcEE-----EeeC----------CCCCCCcceEEECCCC
Confidence 122234568999999998 77776666889999998 44421 1111 1112467899999999
Q ss_pred CEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCce
Q 010256 354 RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (514)
Q Consensus 354 ~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 432 (514)
.+.++... +.|.+||.. ++... +..... ...+.+++++++|+++++...++.|..|+.. +..
T Consensus 200 ~l~v~~~~~~~i~~~~~~--g~~~~-~~~~~~-------------~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~ 262 (300)
T 2qc5_A 200 ALWFVEIMGNKIGRITTT--GEISE-YDIPTP-------------NARPHAITAGKNSEIWFTEWGANQIGRITND-NTI 262 (300)
T ss_dssp SEEEEETTTTEEEEECTT--CCEEE-EECSST-------------TCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE
T ss_pred CEEEEccCCCEEEEEcCC--CcEEE-EECCCC-------------CCCceEEEECCCCCEEEeccCCCeEEEECCC-CcE
Confidence 87777654 789999873 43322 211110 0113489999999977776677899999984 433
Q ss_pred eeeeecCCCcceeEEEECCCCCceeecC
Q 010256 433 ESTTLEASKNPMRRQVQTPSRPSRPLGS 460 (514)
Q Consensus 433 ~~~~~~~~~~~v~~~~~~~~~~~l~s~s 460 (514)
....+......+.++++.+++++.++..
T Consensus 263 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~ 290 (300)
T 2qc5_A 263 QEYQLQTENAEPHGITFGKDGSVWFALK 290 (300)
T ss_dssp EEEECCSTTCCCCCEEECTTSCEEEECS
T ss_pred EEEECCccCCccceeEeCCCCCEEEEcc
Confidence 3233343455678899999988776665
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-11 Score=108.90 Aligned_cols=185 Identities=11% Similarity=0.090 Sum_probs=127.7
Q ss_pred CeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEec-CCeEEEEEcC
Q 010256 235 HINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-KGSIRLIDMR 313 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~-dg~i~~wd~~ 313 (514)
.+.++.++|+|++++ +.++.|..||. +++...++- . .....+.++.+.|+| +++++.+. ++.+..+|.
T Consensus 38 ~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~------~-~~~~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd~- 106 (276)
T 3no2_A 38 ECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIA------A-PAGCEMQTARILPDG-NALVAWCGHPSTILEVNM- 106 (276)
T ss_dssp CCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEE------C-CTTCEEEEEEECTTS-CEEEEEESTTEEEEEECT-
T ss_pred CCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEc------C-CCCccccccEECCCC-CEEEEecCCCCEEEEEeC-
Confidence 456788999999888 54677999998 566554331 1 123467889999999 88888777 778888886
Q ss_pred CCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccc
Q 010256 314 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDL 392 (514)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 392 (514)
+++.+. .+..... ...+......+++.++|.++++... +.|.+||.+ ++.+..+......
T Consensus 107 ~Gk~l~----~~~~~~~------~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~--G~~~w~~~~~~~~------- 167 (276)
T 3no2_A 107 KGEVLS----KTEFETG------IERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN--GQLLNSVKLSGTP------- 167 (276)
T ss_dssp TSCEEE----EEEECCS------CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT--SCEEEEEECSSCC-------
T ss_pred CCCEEE----EEeccCC------CCcccccccCceECCCCCEEEEecCCCEEEEECCC--CCEEEEEECCCCc-------
Confidence 555432 2221110 0111134556778999999998765 999999986 7887777654221
Q ss_pred cccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCC------CcceeEEEECCCCCceeec
Q 010256 393 YENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS------KNPMRRQVQTPSRPSRPLG 459 (514)
Q Consensus 393 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~s~ 459 (514)
.++.+.++|+++++++.+++|..+|..+++.. ..+..+ ...+..+...+++.++++.
T Consensus 168 ---------~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~-w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 168 ---------FSSAFLDNGDCLVACGDAHCFVQLNLESNRIV-RRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp ---------CEEEECTTSCEEEECBTTSEEEEECTTTCCEE-EEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred ---------cceeEcCCCCEEEEeCCCCeEEEEeCcCCcEE-EEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 16778899999999888889999999988543 444322 2236677788888877765
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-11 Score=109.69 Aligned_cols=233 Identities=6% Similarity=-0.048 Sum_probs=149.9
Q ss_pred CeEEEEECCCCCEEE-Ee-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEc
Q 010256 235 HINSISNNSDGETFI-SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~-s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~ 312 (514)
...++++++++++++ +. .++.|.+|+..+..... . .......+.++++++++ +++++.. ++.|.+||.
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~-~-------~~~~~~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~ 94 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-L-------PFNGLYQPQGLAVDGAG-TVYVTDF-NNRVVTLAA 94 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE-C-------CCCSCCSCCCEEECTTC-CEEEEET-TTEEEEECT
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce-E-------eeCCcCCcceeEECCCC-CEEEEcC-CCEEEEEeC
Confidence 678999999999887 54 78999999976433211 0 11223457889999998 6666555 889999998
Q ss_pred CCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeecccccccccc
Q 010256 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCD 391 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 391 (514)
...... .+... ....+..++++++|+++++... +.|.+|+... ....... ....
T Consensus 95 ~~~~~~-----~~~~~-----------~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~-~~~~~~~--~~~~------ 149 (270)
T 1rwi_B 95 GSNNQT-----VLPFD-----------GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS-KTQTVLP--FTGL------ 149 (270)
T ss_dssp TCSCCE-----ECCCC-----------SCSSEEEEEECTTCCEEEEEGGGTEEEEECTTC-CSCEECC--CCSC------
T ss_pred CCceEe-----eeecC-----------CcCCCcceEECCCCCEEEEECCCCEEEEEECCC-ceeEeec--cccC------
Confidence 764321 11110 1135789999999997777544 8899997543 2221111 1100
Q ss_pred ccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCC
Q 010256 392 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGA 471 (514)
Q Consensus 392 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~ 471 (514)
.....++++++|+++++...++.|.+|+....... .....+...+..+++.+++.++++...++.|.+++..
T Consensus 150 -------~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~ 221 (270)
T 1rwi_B 150 -------NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV-VLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG 221 (270)
T ss_dssp -------CSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEE-ECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTT
T ss_pred -------CCceeEEEeCCCCEEEEECCCCEEEEEecCCCceE-eecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCC
Confidence 01227999999998887777889999998765332 2222333667899999999888888778888874322
Q ss_pred CCCccccCCcccccccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 472 DNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 472 ~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
...... ........+..++++|+|+++++.. ++.+.+|.
T Consensus 222 ~~~~~~---~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~ 261 (270)
T 1rwi_B 222 STTSTV---LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT 261 (270)
T ss_dssp CSCCEE---CCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred CCccee---eccCCCCCceeEEECCCCCEEEEECCCCEEEEEc
Confidence 111001 1112235789999999998766665 56666664
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.49 E-value=6e-11 Score=108.39 Aligned_cols=233 Identities=9% Similarity=-0.015 Sum_probs=148.0
Q ss_pred cCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEc
Q 010256 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~ 312 (514)
.....+++. +++.+++. .++.|.+||..+.+....+ . .......+++++++ .++++...++.|.+||+
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i--------~-~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~ 112 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRI--------T-GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINP 112 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEE--------E-CCSSEEEEEEEETT-EEEEEEBSCSEEEEEET
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEc--------C-CCCCCcEEEEeCCC-eEEEEECCCCeEEEEEC
Confidence 345677774 34455555 7899999999977654432 1 23567899999998 66666558999999999
Q ss_pred CCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe--CCeEEEEEccCCCCceeeeeeccccccccc
Q 010256 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVATFQVHEHLRPKLC 390 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 390 (514)
.+++.. ..+..... .+.......+++ .+++++++.. ++.|.++|..+ ++.+..+......
T Consensus 113 ~t~~~~----~~i~~g~~-------~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t-~~~~~~i~~g~~p----- 174 (328)
T 3dsm_A 113 KTYEIT----GYIECPDM-------DMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTET-DKVVDELTIGIQP----- 174 (328)
T ss_dssp TTTEEE----EEEECTTC-------CTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTT-TEEEEEEECSSCB-----
T ss_pred CCCeEE----EEEEcCCc-------cccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCC-CeEEEEEEcCCCc-----
Confidence 987753 22222110 000113455666 4555555542 58999999987 6666666543222
Q ss_pred cccccCCccceeeEEEcCCCCEEEEEeCC----------CcEEEEecCCCceeeeeecCC-CcceeEEEECCCCCceeec
Q 010256 391 DLYENDSIFDKFECCLSGDGGRVATGSYS----------NLFRVFGCSEGSAESTTLEAS-KNPMRRQVQTPSRPSRPLG 459 (514)
Q Consensus 391 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~ 459 (514)
..++++|+|++++++..+ +.|.++|..+++. ...+... ......++++|+++.|.++
T Consensus 175 -----------~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v-~~~~~~~~g~~p~~la~~~d~~~lyv~ 242 (328)
T 3dsm_A 175 -----------TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTV-EKQFKFKLGDWPSEVQLNGTRDTLYWI 242 (328)
T ss_dssp -----------CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEE-EEEEECCTTCCCEEEEECTTSCEEEEE
T ss_pred -----------cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeE-EEEEecCCCCCceeEEEecCCCEEEEE
Confidence 178899999988776654 7899999988743 3344322 2367899999999988776
Q ss_pred CCCCeEEEeeCC--CCCccccCCccccc-ccceEEEEEcCCCCEEEEEe------cCcEEEEe
Q 010256 460 SLSGVVRRVKGA--DNSALDANGNAFDF-SMKLLHLAWHPSENSIACAA------SNSLYMYY 513 (514)
Q Consensus 460 s~d~~v~i~~~~--~~~~~~~~~~~~~~-~~~v~~~~~spd~~~l~~~~------~~~~~i~~ 513 (514)
.. .|.+++.. ++.. ...... ......++++|++..|.++. .+.+.+|.
T Consensus 243 ~~--~v~~~d~~t~~~~~----~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d 299 (328)
T 3dsm_A 243 NN--DIWRMPVEADRVPV----RPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS 299 (328)
T ss_dssp SS--SEEEEETTCSSCCS----SCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred cc--EEEEEECCCCceee----eeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence 54 66664322 2211 011111 45788999999554444443 56677775
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.48 E-value=3.4e-11 Score=109.51 Aligned_cols=158 Identities=8% Similarity=0.116 Sum_probs=101.4
Q ss_pred CeEEEEECCCCCEEEEe-cC---------------CeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEe----cCC
Q 010256 235 HINSISNNSDGETFISA-DD---------------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH----PTH 294 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~-~d---------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~----p~~ 294 (514)
.+.+++++++|+++++. .+ +.|..|+.. ++ ...+ ..+......++++ |++
T Consensus 118 ~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~--------~~~~~~~~~i~~~~~~d~dg 187 (314)
T 1pjx_A 118 GCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ-MIQV--------DTAFQFPNGIAVRHMNDGRP 187 (314)
T ss_dssp CCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC-EEEE--------EEEESSEEEEEEEECTTSCE
T ss_pred CCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC-EEEe--------ccCCCCcceEEEecccCCCC
Confidence 46788899998887776 44 567777764 22 2211 1123456889999 998
Q ss_pred CcEE-EEEecCCeEEEEEcC-CCccccccccceeccCCCCccceeeccc-cceeEEEEecCCCEEEEEe-CCeEEEEEcc
Q 010256 295 CNML-AYSSSKGSIRLIDMR-QSALCDTHSKLFEEQEAPGTRSFFTEII-ASISDIKFARNGRHILSRD-YMTLKLWDIN 370 (514)
Q Consensus 295 ~~~l-~~~~~dg~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~ 370 (514)
+.+ ++...++.|.+||+. ++.... ...+.. +.++. ..+..++++++|+++++.. ++.|.+||..
T Consensus 188 -~~l~v~~~~~~~i~~~~~~~~g~~~~--~~~~~~---------~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~ 255 (314)
T 1pjx_A 188 -YQLIVAETPTKKLWSYDIKGPAKIEN--KKVWGH---------IPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD 255 (314)
T ss_dssp -EEEEEEETTTTEEEEEEEEETTEEEE--EEEEEE---------CCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred -CEEEEEECCCCeEEEEECCCCCcccc--ceEEEE---------CCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCC
Confidence 554 444568999999986 333210 001110 11122 3467899999999888764 4899999987
Q ss_pred CCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEE-EEeCCCcEEEEecCCC
Q 010256 371 MDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA-TGSYSNLFRVFGCSEG 430 (514)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~dg~i~iwd~~~~ 430 (514)
+ ++.+..+..+... +.+++|+++|+.|+ +...++.|..|++...
T Consensus 256 ~-g~~~~~~~~~~~~---------------~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 256 G-GQPKMRIRCPFEK---------------PSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp C-BSCSEEEECSSSC---------------EEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred C-CcEeEEEeCCCCC---------------ceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 5 5555555443221 33899999999554 5556789999998753
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.8e-11 Score=105.71 Aligned_cols=225 Identities=10% Similarity=0.072 Sum_probs=148.5
Q ss_pred CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEEEeeCCC
Q 010256 46 SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSAN 125 (514)
Q Consensus 46 ~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~ 125 (514)
.+++|++++.++.|.+||.++++. +-.+..+.. ..+.++.+ .++
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~-----------------------~w~~~~~~~-----------~~~~~~~~--~pd 47 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEI-----------------------VWEYPLEKG-----------WECNSVAA--TKA 47 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEE-----------------------EEEEECCTT-----------CCCCEEEE--CTT
T ss_pred CCcEEEeeCCCCEEEEEECCCCeE-----------------------EEEeCCCcc-----------CCCcCeEE--CCC
Confidence 457999999999999999877774 233333320 24778888 567
Q ss_pred CcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCC
Q 010256 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (514)
Q Consensus 126 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 205 (514)
|++++ +.++.|..||. +++.......
T Consensus 48 G~ilv--s~~~~V~~~d~-~G~~~W~~~~--------------------------------------------------- 73 (276)
T 3no2_A 48 GEILF--SYSKGAKMITR-DGRELWNIAA--------------------------------------------------- 73 (276)
T ss_dssp SCEEE--ECBSEEEEECT-TSCEEEEEEC---------------------------------------------------
T ss_pred CCEEE--eCCCCEEEECC-CCCEEEEEcC---------------------------------------------------
Confidence 77777 45678888887 5553332211
Q ss_pred cEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-c-CCeEEEEeccCCCceeeeeccCCCcccccCC
Q 010256 206 SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D-DLRINLWNLEISNQSFNIVDVKPANMEDLTE 283 (514)
Q Consensus 206 ~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 283 (514)
.....+.++.+.++|+++++. . ++.|..+|.. ++...++ .... ....+..
T Consensus 74 -------------------------~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~-~~~~-~~~~~~~ 125 (276)
T 3no2_A 74 -------------------------PAGCEMQTARILPDGNALVAWCGHPSTILEVNMK-GEVLSKT-EFET-GIERPHA 125 (276)
T ss_dssp -------------------------CTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEEE-EECC-SCSSGGG
T ss_pred -------------------------CCCccccccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEE-eccC-CCCcccc
Confidence 011235677888999998887 5 7777777763 4433322 1111 1111222
Q ss_pred ceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-C
Q 010256 284 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-M 362 (514)
Q Consensus 284 ~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~ 362 (514)
....+.+.++| +++++...++.|..||.. ++..+ .+... ..+.++.+.++|.+++++.+ +
T Consensus 126 ~~~~v~~~~~G-~~lv~~~~~~~v~~~d~~-G~~~w----~~~~~-------------~~~~~~~~~~~g~~~v~~~~~~ 186 (276)
T 3no2_A 126 QFRQINKNKKG-NYLVPLFATSEVREIAPN-GQLLN----SVKLS-------------GTPFSSAFLDNGDCLVACGDAH 186 (276)
T ss_dssp SCSCCEECTTS-CEEEEETTTTEEEEECTT-SCEEE----EEECS-------------SCCCEEEECTTSCEEEECBTTS
T ss_pred cccCceECCCC-CEEEEecCCCEEEEECCC-CCEEE----EEECC-------------CCccceeEcCCCCEEEEeCCCC
Confidence 34566788998 899999999999999987 77643 23221 23556788899999998766 7
Q ss_pred eEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe
Q 010256 363 TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 417 (514)
Q Consensus 363 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 417 (514)
+|..+|..+ ++.+..+....... .....+..++..++|+++++..
T Consensus 187 ~v~~~d~~t-G~~~w~~~~~~~~~---------~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 187 CFVQLNLES-NRIVRRVNANDIEG---------VQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEEEECTTT-CCEEEEEEGGGSBS---------CCCSEEEEEEECTTSCEEEEEE
T ss_pred eEEEEeCcC-CcEEEEecCCCCCC---------ccccccccceEcCCCCEEEEec
Confidence 899999987 88887776432110 0112244788889999888764
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.47 E-value=5.3e-10 Score=100.81 Aligned_cols=234 Identities=4% Similarity=-0.049 Sum_probs=152.6
Q ss_pred cCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEc
Q 010256 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~ 312 (514)
..+.+++++++++++++. .++.|..||.. ++. ... ........+.++++.+++ +++++...++.|..+|.
T Consensus 62 ~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~-~~~------~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~ 132 (300)
T 2qc5_A 62 AKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF-TEY------PLPQPDSGPYGITEGLNG-DIWFTQLNGDRIGKLTA 132 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEE------ECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECT
T ss_pred CcceeEEECCCCCEEEEecCCCeEEEECCC-CCe-EEe------cCCCCCCCCccceECCCC-CEEEEccCCCeEEEECC
Confidence 457789999999988877 68899999987 432 211 122234668999999998 77777766889999998
Q ss_pred CCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeecccccccccc
Q 010256 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCD 391 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 391 (514)
. ++.. .+... .....+.++++.++|++.++... +.|..+|.. ++... +.....
T Consensus 133 ~-g~~~-----~~~~~----------~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~--g~~~~-~~~~~~------- 186 (300)
T 2qc5_A 133 D-GTIY-----EYDLP----------NKGSYPAFITLGSDNALWFTENQNNSIGRITNT--GKLEE-YPLPTN------- 186 (300)
T ss_dssp T-SCEE-----EEECS----------STTCCEEEEEECTTSSEEEEETTTTEEEEECTT--CCEEE-EECSST-------
T ss_pred C-CCEE-----EccCC----------CCCCCceeEEECCCCCEEEEecCCCeEEEECCC--CcEEE-eeCCCC-------
Confidence 6 4432 11111 11246789999999997766654 789999873 44332 221111
Q ss_pred ccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCC
Q 010256 392 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGA 471 (514)
Q Consensus 392 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~ 471 (514)
......++++++|+++++....+.|.+|+. ++......+..+...+..+++.+++++.++...++.|..++..
T Consensus 187 ------~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 187 ------AAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp ------TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred ------CCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence 011337899999988877777788999998 4433333344455668899999999987777667777764321
Q ss_pred CCCccccCCcccccccceEEEEEcCCCCEEEEEecCcEEEEe
Q 010256 472 DNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 472 ~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~i~~ 513 (514)
.... .. ........+.++++.++|++.++.. +++..|.
T Consensus 260 g~~~-~~--~~~~~~~~~~~i~~~~~g~l~v~~~-~~i~~~~ 297 (300)
T 2qc5_A 260 NTIQ-EY--QLQTENAEPHGITFGKDGSVWFALK-CKIGKLN 297 (300)
T ss_dssp SCEE-EE--ECCSTTCCCCCEEECTTSCEEEECS-SEEEEEE
T ss_pred CcEE-EE--ECCccCCccceeEeCCCCCEEEEcc-CceEEeC
Confidence 1100 01 0111245688999999999666555 3666654
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.5e-12 Score=129.48 Aligned_cols=236 Identities=11% Similarity=0.076 Sum_probs=145.8
Q ss_pred CccCeEEEEECCCCCEEEEe-c-C----CeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCC
Q 010256 232 HDYHINSISNNSDGETFISA-D-D----LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG 305 (514)
Q Consensus 232 h~~~v~~~~~~~~~~~l~s~-~-d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg 305 (514)
|...+..++|+|||++|+.+ + + ..|++||+.+++..... . +...+..++|+|| . .|+.++.++
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-------~--~~~~~~~~~wspD-~-~l~~~~~~~ 229 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-------L--KWVKFSGLAWLGN-D-ALLYSRFAE 229 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-------E--EEEESCCCEESTT-S-EEEEEECCC
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-------C--CCceeccEEEECC-C-EEEEEEecC
Confidence 33467789999999999986 3 2 46999999976543210 1 1112357889999 4 455555543
Q ss_pred --------------eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-C-----CeEE
Q 010256 306 --------------SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-----MTLK 365 (514)
Q Consensus 306 --------------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~-----~~i~ 365 (514)
.|++|++.++..... ..+... .+...+..+.|||||++|+... + ..|+
T Consensus 230 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~--lv~~~~----------~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~ 297 (741)
T 1yr2_A 230 PKEGQAFQALNYNQTVWLHRLGTPQSADQ--PVFATP----------ELPKRGHGASVSSDGRWVVITSSEGTDPVNTVH 297 (741)
T ss_dssp C--------CCCCCEEEEEETTSCGGGCE--EEECCT----------TCTTCEEEEEECTTSCEEEEEEECTTCSCCEEE
T ss_pred cccccccccCCCCCEEEEEECCCCchhCE--EEeccC----------CCCeEEEEEEECCCCCEEEEEEEccCCCcceEE
Confidence 388899876653111 112211 1123578899999999888743 2 4899
Q ss_pred EEEccCCC--CceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCC----CcEEEEecCCCc-eeeeeec
Q 010256 366 LWDINMDS--GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS----NLFRVFGCSEGS-AESTTLE 438 (514)
Q Consensus 366 iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~i~iwd~~~~~-~~~~~~~ 438 (514)
+||+.. + +....+..+.... ... ++|+|+.|+..+.+ +.|++||+.++. .....+.
T Consensus 298 ~~d~~~-~~~~~~~~l~~~~~~~---------------~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~ 360 (741)
T 1yr2_A 298 VARVTN-GKIGPVTALIPDLKAQ---------------WDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP 360 (741)
T ss_dssp EEEEET-TEECCCEEEECSSSSC---------------EEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC
T ss_pred EEECCC-CCCcccEEecCCCCce---------------EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec
Confidence 999986 3 2144444333211 133 45899988877653 459999998742 3334455
Q ss_pred CCCcceeEEEECCCCCceeecCCCCeEEE--ee--CCCCCccccCCcccccccceEEEEEcCCCCEEEEEe-----cCcE
Q 010256 439 ASKNPMRRQVQTPSRPSRPLGSLSGVVRR--VK--GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-----SNSL 509 (514)
Q Consensus 439 ~~~~~v~~~~~~~~~~~l~s~s~d~~v~i--~~--~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~-----~~~~ 509 (514)
.+...+..+.+. ++.++++...|+..++ ++ +.... .+. ......|..++++||++.|+... ...+
T Consensus 361 ~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~--~l~---~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i 434 (741)
T 1yr2_A 361 ESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAG--AVS---LPGIGSASGLSGRPGDRHAYLSFSSFTQPATV 434 (741)
T ss_dssp CCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEE--ECB---CSSSCEEEEEECCBTCSCEEEEEEETTEEEEE
T ss_pred CCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCcee--ecc---CCCCeEEEEeecCCCCCEEEEEEcCCCCCCEE
Confidence 555566677777 6678888889998887 22 22111 111 12356788999999998777432 2456
Q ss_pred EEEe
Q 010256 510 YMYY 513 (514)
Q Consensus 510 ~i~~ 513 (514)
++|.
T Consensus 435 ~~~d 438 (741)
T 1yr2_A 435 LALD 438 (741)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6664
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.3e-11 Score=110.08 Aligned_cols=249 Identities=8% Similarity=0.032 Sum_probs=153.9
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccce
Q 010256 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (514)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (514)
+....+++. +++++++...++.|.+||..+++.. .++.. . ...
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~-----------------------~~i~~-~------------~~p 86 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEV-----------------------GRITG-F------------TSP 86 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEE-----------------------EEEEC-C------------SSE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEE-----------------------EEcCC-C------------CCC
Confidence 456778885 3455556666889999999877642 23321 1 447
Q ss_pred eEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCC
Q 010256 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (514)
Q Consensus 116 ~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (514)
..++++ +++..+++...++.|.+||..+++..........
T Consensus 87 ~~i~~~--~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~-------------------------------------- 126 (328)
T 3dsm_A 87 RYIHFL--SDEKAYVTQIWDYRIFIINPKTYEITGYIECPDM-------------------------------------- 126 (328)
T ss_dssp EEEEEE--ETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTC--------------------------------------
T ss_pred cEEEEe--CCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCc--------------------------------------
Confidence 888885 4554444444899999999999876544332200
Q ss_pred CcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-c-CCeEEEEeccCCCceeeeecc
Q 010256 196 DSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D-DLRINLWNLEISNQSFNIVDV 273 (514)
Q Consensus 196 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~-d~~i~iwd~~~~~~~~~~~~~ 273 (514)
.++......+++ .+++.+++. . ++.|.++|+++.+....+
T Consensus 127 ----------------------------------~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i--- 168 (328)
T 3dsm_A 127 ----------------------------------DMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDEL--- 168 (328)
T ss_dssp ----------------------------------CTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEE---
T ss_pred ----------------------------------cccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEE---
Confidence 000012234555 344445554 3 899999999866543322
Q ss_pred CCCcccccCCceEEEEEecCCCcEEEEEecC----------CeEEEEEcCCCccccccccceeccCCCCccceeeccccc
Q 010256 274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSK----------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIAS 343 (514)
Q Consensus 274 ~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d----------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (514)
. .......+.++|+| ++++++..+ +.|.++|..+++.. ..+.... ...
T Consensus 169 -----~-~g~~p~~i~~~~dG-~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~----~~~~~~~-----------g~~ 226 (328)
T 3dsm_A 169 -----T-IGIQPTSLVMDKYN-KMWTITDGGYEGSPYGYEAPSLYRIDAETFTVE----KQFKFKL-----------GDW 226 (328)
T ss_dssp -----E-CSSCBCCCEECTTS-EEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEE----EEEECCT-----------TCC
T ss_pred -----E-cCCCccceEEcCCC-CEEEEECCCccCCccccCCceEEEEECCCCeEE----EEEecCC-----------CCC
Confidence 1 12334678899998 666665554 78999999887652 2222110 125
Q ss_pred eeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcC-CCCEEEEE----eC
Q 010256 344 ISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATG----SY 418 (514)
Q Consensus 344 i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~----~~ 418 (514)
...++|+|+++.|+++.. .|.+||..+ ++.......... ......++++| +++++++. ..
T Consensus 227 p~~la~~~d~~~lyv~~~-~v~~~d~~t-~~~~~~~~~~~~-------------~~~p~gi~vdp~~g~lyva~~~~y~~ 291 (328)
T 3dsm_A 227 PSEVQLNGTRDTLYWINN-DIWRMPVEA-DRVPVRPFLEFR-------------DTKYYGLTVNPNNGEVYVADAIDYQQ 291 (328)
T ss_dssp CEEEEECTTSCEEEEESS-SEEEEETTC-SSCCSSCSBCCC-------------SSCEEEEEECTTTCCEEEEECTTSSS
T ss_pred ceeEEEecCCCEEEEEcc-EEEEEECCC-CceeeeeeecCC-------------CCceEEEEEcCCCCeEEEEccccccc
Confidence 788999999999988765 899999976 443211100000 00123799999 56666666 57
Q ss_pred CCcEEEEecCCCceeeeeec
Q 010256 419 SNLFRVFGCSEGSAESTTLE 438 (514)
Q Consensus 419 dg~i~iwd~~~~~~~~~~~~ 438 (514)
++.|.+||.. ++ ...++.
T Consensus 292 ~~~V~v~d~~-g~-~~~~i~ 309 (328)
T 3dsm_A 292 QGIVYRYSPQ-GK-LIDEFY 309 (328)
T ss_dssp EEEEEEECTT-CC-EEEEEE
T ss_pred CCEEEEECCC-CC-EEEEEE
Confidence 8899999998 53 334443
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.47 E-value=3.7e-11 Score=109.56 Aligned_cols=283 Identities=9% Similarity=0.023 Sum_probs=170.2
Q ss_pred eeCCCCcEEEEeeC-----CCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCC
Q 010256 121 CQSANSALYLLSTN-----DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (514)
Q Consensus 121 ~~~~~~~~l~s~~~-----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (514)
.|.+++..++++.. ++.|.+.|..+++..........+ .++++|||+.+
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-----------------~va~spDG~~l--------- 92 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-----------------NPVVADDGSFI--------- 92 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-----------------EEEECTTSSCE---------
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-----------------cEEECCCCCEE---------
Confidence 44677878887754 689999999999887766554222 47899999987
Q ss_pred CcccCCC----------CCCcEEeceeecccccccccccccccccc------CccCeEEEEECCCCCEEEEe-c--CCeE
Q 010256 196 DSSFPPG----------GVSSLRLPVVVTSQETNLVAGCRRIYAHA------HDYHINSISNNSDGETFISA-D--DLRI 256 (514)
Q Consensus 196 ~~~~~~~----------~~~~i~i~~~~~~~~~~~~~~~~~~~~~~------h~~~v~~~~~~~~~~~l~s~-~--d~~i 256 (514)
++++ .++.|.+|| ....+.. ..+..+ .......++|+|||+++..+ . ++.|
T Consensus 93 ---yVan~~~~r~~~G~~~~~VsviD-~~t~~v~------~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~V 162 (386)
T 3sjl_D 93 ---AHASTVFSRIARGERTDYVEVFD-PVTLLPT------ADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV 162 (386)
T ss_dssp ---EEEEEEEEETTEEEEEEEEEEEC-TTTCCEE------EEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE
T ss_pred ---EEEcccccccccCCCCCEEEEEE-CCCCeEE------EEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeE
Confidence 5443 357899988 3332211 111000 01235578999999998876 3 6899
Q ss_pred EEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCC-CccccccccceeccCCCCccc
Q 010256 257 NLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ-SALCDTHSKLFEEQEAPGTRS 335 (514)
Q Consensus 257 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~ 335 (514)
.++|+.+.+....+ . .. + +....|.+.+.+++.+.||.+.+.++.. ++........+...
T Consensus 163 sVID~~t~~vv~tI-~-----v~---g---~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~------- 223 (386)
T 3sjl_D 163 GVVDLEGKAFKRML-D-----VP---D---CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE------- 223 (386)
T ss_dssp EEEETTTTEEEEEE-E-----CC---S---EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT-------
T ss_pred EEEECCCCcEEEEE-E-----CC---C---cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccc-------
Confidence 99999976544332 1 11 1 1122354446778888999999999876 44321100111110
Q ss_pred eeeccccce-eEEEEe-cCCCEEEEEeCCeEEEEEccCCCC--ceeeeeeccccccccccccccCCccceeeEEEcCCCC
Q 010256 336 FFTEIIASI-SDIKFA-RNGRHILSRDYMTLKLWDINMDSG--PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG 411 (514)
Q Consensus 336 ~~~~~~~~i-~~~~~s-~~g~~l~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 411 (514)
..++ ....|. ++|++++...+++|.+.|+.. .. .+..+..-.. ..+..-...+. ...++++++++
T Consensus 224 -----~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~-~~~~v~~~~~~~~~--~~~~~g~~p~g---~q~~a~~~~~~ 292 (386)
T 3sjl_D 224 -----DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSS-GDAKFLPAVEALTE--AERADGWRPGG---WQQVAYHRALD 292 (386)
T ss_dssp -----TSCBCSCCEEETTTTEEEEEBTTSEEEEEECTT-SSCEECCCEESSCH--HHHHTTEEECS---SSCEEEETTTT
T ss_pred -----cccccccceeEcCCCcEEEEeCCCEEEEEECCC-Ccceeecceecccc--ccccccccCCC---cceeeECCCCC
Confidence 0112 123564 688777766669999999975 22 2222220000 00000000000 11578899999
Q ss_pred EEEEEeC----------CCcEEEEecCCCceeeeeecCCCcceeEEEECCCCC-ceee-cCCCCeEEEeeCC
Q 010256 412 RVATGSY----------SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP-SRPL-GSLSGVVRRVKGA 471 (514)
Q Consensus 412 ~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s-~s~d~~v~i~~~~ 471 (514)
.|+.... .+.|.+.|+++++......-+ .+++.+.+++|++ +|.+ ...++.|.+++..
T Consensus 293 ~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg--~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~ 362 (386)
T 3sjl_D 293 RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG--HEIDSINVSQDEKPLLYALSTGDKTLYIHDAE 362 (386)
T ss_dssp EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECSSSSCEEEEEETTTTEEEEEETT
T ss_pred eEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC--CCcceEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence 8877643 257999999988554333223 2678999999997 5544 5668999985544
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.44 E-value=9.1e-12 Score=127.25 Aligned_cols=159 Identities=9% Similarity=0.023 Sum_probs=94.2
Q ss_pred cCeEEEEECCCCCEEEEe-cC-----CeEEEEeccCCCce-eeeeccCCCcccccCCceEEEEEecCCCcEEEEEec---
Q 010256 234 YHINSISNNSDGETFISA-DD-----LRINLWNLEISNQS-FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS--- 303 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~-~d-----~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~--- 303 (514)
..+..+.|+|||++|+.. .+ ..|++||+.++... .. .+..+...+... ++|++ ..|+..+.
T Consensus 268 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~-------~l~~~~~~~~~~-~~~dg-~~l~~~s~~~~ 338 (741)
T 1yr2_A 268 KRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT-------ALIPDLKAQWDF-VDGVG-DQLWFVSGDGA 338 (741)
T ss_dssp TCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCE-------EEECSSSSCEEE-EEEET-TEEEEEECTTC
T ss_pred eEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccE-------EecCCCCceEEE-EeccC-CEEEEEECCCC
Confidence 357889999999988876 43 38999999855211 11 122233334444 34888 66666665
Q ss_pred -CCeEEEEEcCCCc-cccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE-eCCeEEEEEccCCCCceeeee
Q 010256 304 -KGSIRLIDMRQSA-LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQ 380 (514)
Q Consensus 304 -dg~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~iwd~~~~~~~~~~~~ 380 (514)
++.|.+||+.++. . ...+ +..+...+..+.++ ++.++++. .++..+||.+...++....+.
T Consensus 339 ~~~~l~~~d~~~~~~~----~~~l-----------~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~ 402 (741)
T 1yr2_A 339 PLKKIVRVDLSGSTPR----FDTV-----------VPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVS 402 (741)
T ss_dssp TTCEEEEEECSSSSCE----EEEE-----------ECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECB
T ss_pred CCCEEEEEeCCCCccc----cEEE-----------ecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeecc
Confidence 3459999987642 1 1111 11222346677777 45555655 457777766553255454444
Q ss_pred eccccccccccccccCCccceeeEEEcCCCCEEE-EE---eCCCcEEEEecCCCc
Q 010256 381 VHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA-TG---SYSNLFRVFGCSEGS 431 (514)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~---~~dg~i~iwd~~~~~ 431 (514)
.+... .+..++++|+++.|+ +. ...+.|++||+.+++
T Consensus 403 ~~~~~--------------~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 403 LPGIG--------------SASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp CSSSC--------------EEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred CCCCe--------------EEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 32110 133788999988665 22 234789999998764
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-09 Score=100.33 Aligned_cols=294 Identities=7% Similarity=-0.025 Sum_probs=169.1
Q ss_pred EEcCCCCeEEEecC--CC---eEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccccee
Q 010256 42 EFDKSGDHLATGDR--GG---RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN 116 (514)
Q Consensus 42 ~~s~~g~~l~tg~~--dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~ 116 (514)
...|+++++++... .+ .|.+||..+++.. ..+.... .+
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~-----------------------~~i~~g~------------~p-- 69 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSIL-----------------------GHVNGGF------------LP-- 69 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEE-----------------------EEecCCC------------CC--
Confidence 44578887777653 22 7899998876632 2222211 22
Q ss_pred EEEEeeCCCCcEEEEee----------CCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcc
Q 010256 117 KIRWCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (514)
Q Consensus 117 ~i~~~~~~~~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 186 (514)
.+++ +++|++++++. .++.|.+||..+.+.............. ....+..+.++|||+.+
T Consensus 70 ~i~~--spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~--------~g~~p~~~~~spDG~~l 139 (373)
T 2mad_H 70 NPVA--AHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFD--------VGPYSWMNANTPNNADL 139 (373)
T ss_pred CeEE--CCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccc--------cCCCccceEECCCCCEE
Confidence 7788 67888888875 3688999999987766554432000000 00122378999999998
Q ss_pred ccccCCCCCCcccCCCC--CCcEEeceeecccccccccccccc-ccccCccCeEEEEECCCCC-EEEEe-cCCeEEEEec
Q 010256 187 ERNFGCASNDSSFPPGG--VSSLRLPVVVTSQETNLVAGCRRI-YAHAHDYHINSISNNSDGE-TFISA-DDLRINLWNL 261 (514)
Q Consensus 187 ~~~~~~~~~~~~~~~~~--~~~i~i~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~ 261 (514)
+.++. ++.|.++| ... +. ... + . . . .++.+.|++. .+++. .||.+.++|.
T Consensus 140 ------------~v~n~~~~~~v~viD-~t~-~~------~~~~i-~-~-~--~~~~~~~~~~~~~~~~~~dg~~~~vd~ 194 (373)
T 2mad_H 140 ------------LFFQFAAGPAVGLVV-QGG-SS------DDQLL-S-S-P--TCYHIHPGAPSTFYLLCAQGGLAKTDH 194 (373)
T ss_pred ------------EEEecCCCCeEEEEE-CCC-CE------EeEEc-C-C-C--ceEEEEeCCCceEEEEcCCCCEEEEEC
Confidence 55443 46677655 221 11 111 1 0 0 0 1244556553 33444 8999999999
Q ss_pred cCCCceeeeeccCCCcccccCCc-eEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecc
Q 010256 262 EISNQSFNIVDVKPANMEDLTEV-ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 340 (514)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~-i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (514)
+++..... ...+ .+. ...+ .....+.+++ ..++..+..+.+.+.|+....... ...++....... .....
T Consensus 195 -~g~~~~~~-~~~~-~~~-~~~p~~~~~~~~~~~-~~~~~~~~~~~v~vid~~~~~~~v--~~~~~~~~~~~~--~~~~~ 265 (373)
T 2mad_H 195 -AGGAAGAG-LVGA-MLT-AAQNLLTQPAQANKS-GRIVWPVYSGKILQADISAAGATN--KAPIDALSGGRK--ADTWR 265 (373)
T ss_pred -CCcEEEEE-eccc-ccc-CCcceeecceeEecC-CEEEEEcCCceEEEEeccCCcceE--eeeeeecCCccc--cccee
Confidence 56544221 1000 011 1122 2335667776 344444478899999987643210 112221100000 00001
Q ss_pred ccceeEEEEecCCCEEEEEe-----------CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCC
Q 010256 341 IASISDIKFARNGRHILSRD-----------YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (514)
Q Consensus 341 ~~~i~~~~~s~~g~~l~~~~-----------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 409 (514)
......+.++|+++.++... .+.|.++|..+ .+.+.++...... ..++|+||
T Consensus 266 p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t-~~vv~~i~~g~~p----------------~~i~~s~D 328 (373)
T 2mad_H 266 PGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV-GQTSSQISLGHDV----------------DAISVAQD 328 (373)
T ss_pred cCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCC-CEEEEEEECCCCc----------------CeEEECCC
Confidence 12345578999998877642 15799999997 7777777644322 28999999
Q ss_pred CC-EEEEEe-CCCcEEEEecCCCcee
Q 010256 410 GG-RVATGS-YSNLFRVFGCSEGSAE 433 (514)
Q Consensus 410 ~~-~l~s~~-~dg~i~iwd~~~~~~~ 433 (514)
|+ +++++. .++.|.+||+.+++..
T Consensus 329 g~~~l~v~~~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 329 GGPDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred CCeEEEEEcCCCCeEEEEECCCCCEE
Confidence 99 777776 5899999999987544
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.42 E-value=2.6e-10 Score=104.05 Aligned_cols=314 Identities=8% Similarity=0.001 Sum_probs=177.8
Q ss_pred EEEcCCCCeEEEecC-----CCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccce
Q 010256 41 IEFDKSGDHLATGDR-----GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (514)
Q Consensus 41 ~~~s~~g~~l~tg~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (514)
....|+++.+++... ++.|.+.|..+.+.. .++..-. .+
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~-----------------------~~I~vG~------------~P- 81 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVI-----------------------GMIDGGF------------LP- 81 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEE-----------------------EEEEECS------------SC-
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEE-----------------------EEEECCC------------CC-
Confidence 455789998888765 679999998877642 3333221 22
Q ss_pred eEEEEeeCCCCcEEEEee----------CCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCc
Q 010256 116 NKIRWCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (514)
Q Consensus 116 ~~i~~~~~~~~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 185 (514)
. +.+ +++|++++++. .++.|.+||..+++............ ......+..+.++|||+.
T Consensus 82 ~-va~--spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r--------~~~g~~P~~~a~spDGk~ 150 (386)
T 3sjl_D 82 N-PVV--ADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPR--------FLVGTYPWMTSLTPDGKT 150 (386)
T ss_dssp E-EEE--CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC--------CCBSCCGGGEEECTTSSE
T ss_pred c-EEE--CCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccc--------cccCCCCceEEEcCCCCE
Confidence 3 888 67888887765 36789999999998776665431000 000112337899999998
Q ss_pred cccccCCCCCCcccCCC--CCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEecc
Q 010256 186 GERNFGCASNDSSFPPG--GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLE 262 (514)
Q Consensus 186 l~~~~~~~~~~~~~~~~--~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~ 262 (514)
+ ++.. .++.|.++| ....+. ...+.. ... ...+....+.+++. .||++.+.++.
T Consensus 151 l------------yVan~~~~~~VsVID-~~t~~v------v~tI~v---~g~-~~~~P~g~~~~~~~~~DG~~~~v~~~ 207 (386)
T 3sjl_D 151 L------------LFYQFSPAPAVGVVD-LEGKAF------KRMLDV---PDC-YHIFPTAPDTFFMHCRDGSLAKVAFG 207 (386)
T ss_dssp E------------EEEECSSSCEEEEEE-TTTTEE------EEEEEC---CSE-EEEEEEETTEEEEEETTSCEEEEECC
T ss_pred E------------EEEEcCCCCeEEEEE-CCCCcE------EEEEEC---CCc-ceeecCCCceeEEECCCCCEEEEECC
Confidence 7 5544 367899888 332221 111100 001 11122223344443 67777777776
Q ss_pred CCCceeeeeccCCCcccccCCceE-EEEEe-cCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecc
Q 010256 263 ISNQSFNIVDVKPANMEDLTEVIT-SAEFH-PTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 340 (514)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~i~-~v~~~-p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (514)
+........ ...+......+. ...|. ++| ++++ .+.+|.+.+.|+.+..... ...+...... .......
T Consensus 208 ~~g~v~~~~---~~~~~~~~~~~~~~~~~~~~dG-~~~~-vs~~g~V~v~d~~~~~~~v--~~~~~~~~~~--~~~~g~~ 278 (386)
T 3sjl_D 208 TEGTPEITH---TEVFHPEDEFLINHPAYSQKAG-RLVW-PTYTGKIHQIDLSSGDAKF--LPAVEALTEA--ERADGWR 278 (386)
T ss_dssp SSSCCEEEE---CCCCSCTTSCBCSCCEEETTTT-EEEE-EBTTSEEEEEECTTSSCEE--CCCEESSCHH--HHHTTEE
T ss_pred CCCeEEEee---cceeccccccccccceeEcCCC-cEEE-EeCCCEEEEEECCCCccee--ecceeccccc--ccccccc
Confidence 422221110 001111112221 23665 566 4444 6668999999997654210 1111100000 0000001
Q ss_pred ccceeEEEEecCCCEEEEEe----------C-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCC
Q 010256 341 IASISDIKFARNGRHILSRD----------Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (514)
Q Consensus 341 ~~~i~~~~~s~~g~~l~~~~----------~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 409 (514)
......++++++++.++... . ..|.+.|+.+ .+.+.++...... +.+++++|
T Consensus 279 p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t-~kv~~~i~vg~~~----------------~~lavs~D 341 (386)
T 3sjl_D 279 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT-GERLAKFEMGHEI----------------DSINVSQD 341 (386)
T ss_dssp ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEEEEE----------------CEEEECSS
T ss_pred CCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCC-CeEEEEEECCCCc----------------ceEEECCC
Confidence 13445678899988887742 1 5799999998 8888887655432 28999999
Q ss_pred CC-EEEEE-eCCCcEEEEecCCCceeeeeecCCCcceeEEEECCC
Q 010256 410 GG-RVATG-SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS 452 (514)
Q Consensus 410 ~~-~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 452 (514)
++ +|++. ..++.|.++|..+++.. .++..- .....+.+++|
T Consensus 342 ~~~~ly~tn~~~~~VsViD~~t~k~~-~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 342 EKPLLYALSTGDKTLYIHDAESGEEL-RSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp SSCEEEEEETTTTEEEEEETTTCCEE-EEECCC-CSSCCEEEECC
T ss_pred CCeEEEEEcCCCCeEEEEECCCCcEE-EEecCC-CCCceeEECCc
Confidence 97 66664 45899999999988543 444322 22234555554
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.37 E-value=5.2e-10 Score=101.64 Aligned_cols=238 Identities=6% Similarity=0.046 Sum_probs=147.6
Q ss_pred cCeEEEEECCCCCEEEE-------e-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecC-CCcEEEEEecC
Q 010256 234 YHINSISNNSDGETFIS-------A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT-HCNMLAYSSSK 304 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s-------~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~-~~~~l~~~~~d 304 (514)
....+++|++++.++++ + .++.|.+||..+++.. .+. . ....++...+.+++++++ + +++++ +..
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~-~~~-~--~~~~~~~~~~~~i~~~~~~g-~l~v~-~~~ 91 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-VIC-K--PEVNGYGGIPAGCQCDRDAN-QLFVA-DMR 91 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE-EEE-C--CEETTEECCEEEEEECSSSS-EEEEE-ETT
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEE-EEE-e--cccCCCCCCCceEEEecCCC-cEEEE-ECC
Confidence 45678999999999988 5 7899999998755432 111 0 011224467899999999 6 55554 445
Q ss_pred CeEEEEEcCCCccccccccc-eeccCCCCccceeeccccceeEEEEecCCCEEEEEeC----------------CeEEEE
Q 010256 305 GSIRLIDMRQSALCDTHSKL-FEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY----------------MTLKLW 367 (514)
Q Consensus 305 g~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~----------------~~i~iw 367 (514)
+.|.+||.. ++.. .. ..... ......+.+++++++|+++++... +.|..|
T Consensus 92 ~~l~~~d~~-g~~~----~~~~~~~~--------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (314)
T 1pjx_A 92 LGLLVVQTD-GTFE----EIAKKDSE--------GRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCF 158 (314)
T ss_dssp TEEEEEETT-SCEE----ECCSBCTT--------SCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEE
T ss_pred CCEEEEeCC-CCEE----EEEeccCC--------CccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEE
Confidence 588999987 5531 11 11000 001135889999999988877532 345555
Q ss_pred EccCCCCceeeeeeccccccccccccccCCccceeeEEEc----CCCCEEEEE-eCCCcEEEEecC-CCce----eeeee
Q 010256 368 DINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS----GDGGRVATG-SYSNLFRVFGCS-EGSA----ESTTL 437 (514)
Q Consensus 368 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----~~~~~l~s~-~~dg~i~iwd~~-~~~~----~~~~~ 437 (514)
|.. ++.. .+..+... ...++|+ |+++.|+.+ ..++.|++|++. ++.. ....+
T Consensus 159 ~~~--g~~~-~~~~~~~~---------------~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~ 220 (314)
T 1pjx_A 159 TTD--GQMI-QVDTAFQF---------------PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHI 220 (314)
T ss_dssp CTT--SCEE-EEEEEESS---------------EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEC
T ss_pred CCC--CCEE-EeccCCCC---------------cceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEEC
Confidence 433 3322 22111111 1278999 999765544 567899999986 3321 11233
Q ss_pred cCCC-cceeEEEECCCCCceeecCCCCeEEEeeCC--CCCccccCCcccccccceEEEEEcCCCCEEEEEecC--cEEEE
Q 010256 438 EASK-NPMRRQVQTPSRPSRPLGSLSGVVRRVKGA--DNSALDANGNAFDFSMKLLHLAWHPSENSIACAASN--SLYMY 512 (514)
Q Consensus 438 ~~~~-~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~--~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~--~~~i~ 512 (514)
..+. ..+..+++.++++++++...++.|.+++.. +.. .....+...+.+++|+|+++.|.+++.+ ++..|
T Consensus 221 ~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~-----~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~ 295 (314)
T 1pjx_A 221 PGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPK-----MRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKF 295 (314)
T ss_dssp CCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCS-----EEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEe-----EEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEE
Confidence 3443 567889999999988887777777774322 111 1111234678999999999977766644 77776
Q ss_pred e
Q 010256 513 Y 513 (514)
Q Consensus 513 ~ 513 (514)
.
T Consensus 296 ~ 296 (314)
T 1pjx_A 296 E 296 (314)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.37 E-value=9.6e-10 Score=98.89 Aligned_cols=234 Identities=8% Similarity=0.063 Sum_probs=146.1
Q ss_pred cceEEEEEcCC-CCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccc
Q 010256 36 DIISAIEFDKS-GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (514)
Q Consensus 36 ~~V~~~~~s~~-g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (514)
..-.+..|+|+ +.++++...++.|..|+..+++.. .+. .. ..
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~------------------------~~~-~~------------~~ 55 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ------------------------RVT-MD------------AP 55 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE------------------------EEE-CS------------SC
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE------------------------EEe-CC------------Cc
Confidence 34568899995 456666667889999998765421 111 11 55
Q ss_pred eeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCC
Q 010256 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (514)
Q Consensus 115 v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (514)
+.++++ .++|+++++ . ++.|.+||..+++.........
T Consensus 56 ~~~i~~--~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~-------------------------------------- 93 (297)
T 3g4e_A 56 VSSVAL--RQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDN-------------------------------------- 93 (297)
T ss_dssp EEEEEE--BTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCT--------------------------------------
T ss_pred eEEEEE--CCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCC--------------------------------------
Confidence 889999 567775444 4 5689999998877543322110
Q ss_pred CCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cC---------CeEEEEeccCC
Q 010256 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DD---------LRINLWNLEIS 264 (514)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d---------~~i~iwd~~~~ 264 (514)
......+++++++|+|+++++. .. ..-.+|.+...
T Consensus 94 -----------------------------------~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~ 138 (297)
T 3g4e_A 94 -----------------------------------DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD 138 (297)
T ss_dssp -----------------------------------TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT
T ss_pred -----------------------------------CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC
Confidence 0011346788899999877764 22 23455555433
Q ss_pred CceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEc--CCCccccccccceeccCCCCccceeecccc
Q 010256 265 NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM--RQSALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (514)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (514)
.....+ .........++|+|++..++++.+.++.|.+||+ .++.... .+.+.. +..+..
T Consensus 139 g~~~~~--------~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~--~~~~~~---------~~~~~~ 199 (297)
T 3g4e_A 139 HHVKKY--------FDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISN--RRSVYK---------LEKEEQ 199 (297)
T ss_dssp SCEEEE--------EEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEE--EEEEEE---------CCGGGC
T ss_pred CCEEEE--------eeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccC--cEEEEE---------CCCCCC
Confidence 322211 1223456899999999435566667899999997 3443211 011110 112224
Q ss_pred ceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEc-CCCCEEEEEeC
Q 010256 343 SISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS-GDGGRVATGSY 418 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~~~ 418 (514)
....++++++|++.++... +.|.+||..+ ++.+..+..+... +++++|. ||++.|+.++.
T Consensus 200 ~p~g~~~d~~G~lwva~~~~~~v~~~d~~t-G~~~~~i~~p~~~---------------~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 200 IPDGMCIDAEGKLWVACYNGGRVIRLDPVT-GKRLQTVKLPVDK---------------TTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEEEEBTTSCEEEEEETTTEEEEECTTT-CCEEEEEECSSSB---------------EEEEEEESGGGCEEEEEEB
T ss_pred CCCeeEECCCCCEEEEEcCCCEEEEEcCCC-ceEEEEEECCCCC---------------ceEEEEeCCCCCEEEEEcC
Confidence 6788999999988877654 8899999986 7777777655322 3489998 88887665543
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.4e-10 Score=105.29 Aligned_cols=292 Identities=7% Similarity=0.010 Sum_probs=167.3
Q ss_pred CCCCeEEEecCC-----CeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEE
Q 010256 45 KSGDHLATGDRG-----GRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (514)
Q Consensus 45 ~~g~~l~tg~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~ 119 (514)
++++++++.... +.|.++|..+.+.. .++..-. .+ .+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv-----------------------~~I~vG~------------~P--gia 124 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRIL-----------------------GMTDGGF------------LP--HPV 124 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEE-----------------------EEEEECS------------SC--EEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEE-----------------------EEEECCC------------CC--ceE
Confidence 577766665542 69999999877742 3332211 33 788
Q ss_pred EeeCCCCcEEEEee----------CCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 120 WCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 120 ~~~~~~~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
+ ++++++++++. .++.|.++|..+++.............. ....+..+.++|||+.+
T Consensus 125 ~--SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~--------~g~~P~~~~~spDGk~l--- 191 (426)
T 3c75_H 125 A--AEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFL--------VGTYQWMNALTPDNKNL--- 191 (426)
T ss_dssp E--CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC--------BSCCGGGSEECTTSSEE---
T ss_pred E--CCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccc--------cCCCcceEEEcCCCCEE---
Confidence 8 67888888775 4679999999999877665543100000 00112378999999988
Q ss_pred cCCCCCCcccCCCC--CCcEEeceeeccccccccccccccccccCccCeEEEEECCCC-CEEEEe-cCCeEEEEeccCCC
Q 010256 190 FGCASNDSSFPPGG--VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDG-ETFISA-DDLRINLWNLEISN 265 (514)
Q Consensus 190 ~~~~~~~~~~~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~ 265 (514)
+++.. ++.|.+.| ....+. ...+..+ .. ....|++ ..+++. .||++.+.+..+++
T Consensus 192 ---------yV~n~~~~~~VsVID-~~t~kv------v~~I~v~---g~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~ 250 (426)
T 3c75_H 192 ---------LFYQFSPAPAVGVVD-LEGKTF------DRMLDVP---DC--YHIFPASPTVFYMNCRDGSLARVDFADGE 250 (426)
T ss_dssp ---------EEEECSSSCEEEEEE-TTTTEE------EEEEECC---SE--EEEEEEETTEEEEEETTSSEEEEECCTTC
T ss_pred ---------EEEecCCCCeEEEEE-CCCCeE------EEEEEcC---Cc--eeeccCCCcEEEEEcCCCCEEEEECCCCc
Confidence 55442 57788888 322221 1111011 01 1222332 333333 66666666664332
Q ss_pred ceeeeeccCCCcccccCCc-eEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccce
Q 010256 266 QSFNIVDVKPANMEDLTEV-ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASI 344 (514)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~-i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 344 (514)
... ... ..+.....+ ...+.+.+++ ..++..+..+.+.+.|+....... ...+....... . .........
T Consensus 251 v~~-~~~---~~~~v~~~p~~~~~~~~~dg-~~~~~~s~~g~V~ViD~~~~~~~v--~~~~~~~~~~~-i-~~g~~p~g~ 321 (426)
T 3c75_H 251 TKV-TNT---EVFHTEDELLINHPAFSLRS-GRLVWPTYTGKIFQADLTAEGATF--RAPIEALTEAE-R-ADDWRPGGW 321 (426)
T ss_dssp CEE-EEC---CCCSCTTSCBCSCCEECTTT-CEEEEEBTTSEEEEEEECSSCEEE--CCCEESSCTTT-G-GGTEEECSS
T ss_pred EEE-Eee---eeeccCCCceeeEeeecCCC-CEEEEEeCCCcEEEEeccCCceEE--eeeeeeccccc-c-ccccccCCc
Confidence 221 100 001111111 1235678888 555556778999999997654211 11111100000 0 000001123
Q ss_pred eEEEEecCCCEEEEEe-----------CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCC-E
Q 010256 345 SDIKFARNGRHILSRD-----------YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-R 412 (514)
Q Consensus 345 ~~~~~s~~g~~l~~~~-----------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~ 412 (514)
..++++|+++.++... .+.|.++|..+ .+.+.++....... .++|+|||+ +
T Consensus 322 ~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T-~kvv~~I~vg~~P~----------------gia~spDg~~~ 384 (426)
T 3c75_H 322 QQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET-GERINKIELGHEID----------------SINVSQDAEPL 384 (426)
T ss_dssp SCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEEEEEC----------------EEEECCSSSCE
T ss_pred eeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCC-CeEEEEEECCCCcC----------------eEEEccCCCEE
Confidence 3478999988777642 14799999998 88888887554322 899999999 8
Q ss_pred EEEEe-CCCcEEEEecCCCcee
Q 010256 413 VATGS-YSNLFRVFGCSEGSAE 433 (514)
Q Consensus 413 l~s~~-~dg~i~iwd~~~~~~~ 433 (514)
+++.. .++.|.++|+.+++..
T Consensus 385 lyv~n~~s~~VsVID~~t~kvv 406 (426)
T 3c75_H 385 LYALSAGTQTLHIYDAATGEEL 406 (426)
T ss_dssp EEEEETTTTEEEEEETTTCCEE
T ss_pred EEEEcCCCCeEEEEECCCCCEE
Confidence 88877 5899999999988544
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.33 E-value=5.1e-10 Score=102.95 Aligned_cols=270 Identities=6% Similarity=-0.016 Sum_probs=158.9
Q ss_pred cceEEEEEcCCCCeEEEec--CCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccc
Q 010256 36 DIISAIEFDKSGDHLATGD--RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (514)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (514)
..+..++++|+|+++++.. .++.++||.+.+++.. .+ |... ....+|- .
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-----~~----------p~~~--~~~~~~~------------~ 67 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-----PF----------PPQS--GNAIITF------------D 67 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-----ES----------CCCC--SSCCCCC------------S
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-----cC----------CCcc--cCcccce------------e
Confidence 5789999999999988863 2343677776533311 00 0000 0011222 5
Q ss_pred ceeEEEEeeCCCCcEEEEeeC-----CCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccc
Q 010256 114 KINKIRWCQSANSALYLLSTN-----DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (514)
Q Consensus 114 ~v~~i~~~~~~~~~~l~s~~~-----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (514)
.+..+++ .++++++++-.. ++.|.+||+.+++......+...
T Consensus 68 ~p~gv~~--d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~------------------------------- 114 (343)
T 2qe8_A 68 TVLGIKS--DGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPP------------------------------- 114 (343)
T ss_dssp CEEEEEE--CSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTT-------------------------------
T ss_pred EeeEEEE--cCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChh-------------------------------
Confidence 6899999 566765555433 57899999998875544332200
Q ss_pred ccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-----cCCeEEEEeccC
Q 010256 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-----DDLRINLWNLEI 263 (514)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-----~d~~i~iwd~~~ 263 (514)
...+...+..+++++++..+..+ .++.|.+||+.+
T Consensus 115 ----------------------------------------~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~ 154 (343)
T 2qe8_A 115 ----------------------------------------ITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQT 154 (343)
T ss_dssp ----------------------------------------TSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTT
T ss_pred ----------------------------------------hcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCC
Confidence 00112345678888765444333 368999999985
Q ss_pred CCceeeeeccCCCcccccCCce-EEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecccc
Q 010256 264 SNQSFNIVDVKPANMEDLTEVI-TSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (514)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~i-~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (514)
++ ..+++ .+|.... ....+.+++ ..+.+.+.++.++.|. .
T Consensus 155 g~-~~r~~-------~~~~~~~~~~~~~~~~g-~~~~~~~~~g~~~~~~------------------------------~ 195 (343)
T 2qe8_A 155 GL-AARVL-------QGYPGIAPEDIDLVIDG-VPVQIGQPDGTVIRPH------------------------------L 195 (343)
T ss_dssp CC-EEEEC-------TTCTTTSCCSCCCEETT-EECBEECTTSCEECCC------------------------------C
T ss_pred CC-EEEEe-------cCCCcccccccceeECC-EEEEeccCCCceecee------------------------------c
Confidence 54 33321 1111100 013455566 6677777777765542 1
Q ss_pred ceeEEEEecCCCEEEEEeC--CeEEEEEccC--CCCc-----ee--eeeeccccccccccccccCCccceeeEEEcCCCC
Q 010256 343 SISDIKFARNGRHILSRDY--MTLKLWDINM--DSGP-----VA--TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG 411 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~--~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 411 (514)
.+..++|+|+|+.|+.++. ..+..++... .+.. .. ...++... ...++++++|+
T Consensus 196 ~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~---------------pdgia~d~~G~ 260 (343)
T 2qe8_A 196 GVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPI---------------CDGISIDKDHN 260 (343)
T ss_dssp CEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCS---------------CSCEEECTTCC
T ss_pred ccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCC---------------CceEEECCCCC
Confidence 3577999999998888654 4555555321 0110 00 01111111 11699999999
Q ss_pred EEEEEeCCCcEEEEecCCCceeeeeecC-CCcceeEEEECCCCCceeecCCC
Q 010256 412 RVATGSYSNLFRVFGCSEGSAESTTLEA-SKNPMRRQVQTPSRPSRPLGSLS 462 (514)
Q Consensus 412 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~s~d 462 (514)
++++...++.|.+||.++++ ....... +...+..+++.++++++++.+..
T Consensus 261 l~va~~~~~~V~~~d~~~G~-~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~ 311 (343)
T 2qe8_A 261 IYVGDLAHSAIGVITSADRA-YKLLVTDEKLSWTDSFNFGSDGYLYFDCNQL 311 (343)
T ss_dssp EEEEEGGGTEEEEEETTTTE-EEEEEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred EEEEccCCCeEEEEECCCCC-EEEEEECCceecCCeeEECCCCcEEEEeCcc
Confidence 99998889999999985553 2222222 24567899999998877776543
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.6e-09 Score=100.38 Aligned_cols=268 Identities=10% Similarity=0.111 Sum_probs=154.4
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
.....|+| ++++.++++...++.|++||..+++........ ..+ .++++++++.+
T Consensus 131 ~~P~~la~--d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~----------------~~~-~ia~~~~g~~l------ 185 (409)
T 3hrp_A 131 KYMWGIAA--VGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF----------------KGG-KPAVTKDKQRV------ 185 (409)
T ss_dssp CCEEEEEE--CSTTEEEEEETTTTEEEEEETTTTEEEEEEETC----------------CBC-BCEECTTSSEE------
T ss_pred CCceEEEE--eCCCCEEEEecCCCcEEEEECCCCEEEEeeccC----------------CCC-ceeEecCCCcE------
Confidence 35778899 567777777777899999999988876554432 112 26889999876
Q ss_pred CCCCcccCCCCCC--cEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 193 ASNDSSFPPGGVS--SLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 193 ~~~~~~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
+.+..++ .|..++ .. ..................+.+++++|++..|..+ .++.|+.||..+....
T Consensus 186 ------~~~d~~~~~~I~~~d-~~---~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~-- 253 (409)
T 3hrp_A 186 ------YSIGWEGTHTVYVYM-KA---SGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT-- 253 (409)
T ss_dssp ------EEEBSSTTCEEEEEE-GG---GTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE--
T ss_pred ------EEEecCCCceEEEEE-cC---CCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE--
Confidence 5555544 566555 21 1110001100001134567889999954445556 7889999999855422
Q ss_pred eeccCCCcccccCCce-E-EEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccC-CCCcc--ceeeccccce
Q 010256 270 IVDVKPANMEDLTEVI-T-SAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE-APGTR--SFFTEIIASI 344 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i-~-~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~i 344 (514)
++... ...+....- . .++|+|++..++++-..++.|+.|+..... ..+.+.. ..... ..........
T Consensus 254 ~~~~~--~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~------~~~~g~~~~~g~~dg~~~~~~~~~P 325 (409)
T 3hrp_A 254 LIKQL--ELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGEC------EWFCGSATQKTVQDGLREEALFAQP 325 (409)
T ss_dssp EEEEC--CCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCE------EEEEECTTCCSCBCEEGGGCBCSSE
T ss_pred EEecc--cccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCE------EEEEeCCCCCCcCCCcccccEeCCC
Confidence 11000 011111111 3 899999643777777778999999876431 1111111 00000 0000112357
Q ss_pred eEEEEecCCCEEEEEe-C-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcE
Q 010256 345 SDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLF 422 (514)
Q Consensus 345 ~~~~~s~~g~~l~~~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 422 (514)
..++++|+|+++++-. . ++|+.|++.. +. +.++.++.....................++++++|.++++-..+++|
T Consensus 326 ~gia~d~dG~lyvad~~~~~~I~~~~~~~-G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~I 403 (409)
T 3hrp_A 326 NGMTVDEDGNFYIVDGFKGYCLRKLDILD-GY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAI 403 (409)
T ss_dssp EEEEECTTCCEEEEETTTTCEEEEEETTT-TE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEE
T ss_pred eEEEEeCCCCEEEEeCCCCCEEEEEECCC-CE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeE
Confidence 8999999999777755 5 8999999764 43 44554441110000000000111223489999998888888888888
Q ss_pred EEEec
Q 010256 423 RVFGC 427 (514)
Q Consensus 423 ~iwd~ 427 (514)
+.+++
T Consensus 404 r~i~~ 408 (409)
T 3hrp_A 404 RKYAV 408 (409)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88765
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.31 E-value=9.2e-09 Score=95.18 Aligned_cols=286 Identities=6% Similarity=-0.101 Sum_probs=163.2
Q ss_pred CCCCcEEEEeeC--CC---eEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCc
Q 010256 123 SANSALYLLSTN--DK---TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS 197 (514)
Q Consensus 123 ~~~~~~l~s~~~--d~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 197 (514)
.+++.+++++.. .. .|.++|..+++......... .+ .++++|||+.+
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~----------------~p-~i~~spDg~~l----------- 80 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF----------------LP-NPVAAHSGSEF----------- 80 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCC----------------CC-CeEECCCCCEE-----------
Confidence 456666666643 33 88999999988765444321 22 78999999987
Q ss_pred ccCCC----------CCCcEEeceeeccccccccccc--cccccccCccCeEEEEECCCCCEEEEe-c--CCeEEEEecc
Q 010256 198 SFPPG----------GVSSLRLPVVVTSQETNLVAGC--RRIYAHAHDYHINSISNNSDGETFISA-D--DLRINLWNLE 262 (514)
Q Consensus 198 ~~~~~----------~~~~i~i~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~-~--d~~i~iwd~~ 262 (514)
+... .++.|.++| ....+....... ...+. +......++|+|||++|+.+ . ++.|.++| .
T Consensus 81 -yv~n~~~~~~~rg~~~~~v~viD-~~t~~~~~~i~~~~~~~~~--~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~ 155 (373)
T 2mad_H 81 -ALASTSFSRIAKGKRTDYVEVFD-PVTFLPIADIELPDAPRFD--VGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-Q 155 (373)
T ss_pred -EEEeccccccccCCCCCeEEEEE-CCCCcEEEEEECCCccccc--cCCCccceEECCCCCEEEEEecCCCCeEEEEE-C
Confidence 4433 367788888 332211110000 00000 01234589999999999987 3 58899999 8
Q ss_pred CCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecccc
Q 010256 263 ISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 342 (514)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (514)
+.+....++. ... ++.+.|++...+++.+.||.+.++|. +++.... ..... .+.+...
T Consensus 156 t~~~~~~~i~--------~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~----~~~~~------~~~~~~p 213 (373)
T 2mad_H 156 GGSSDDQLLS--------SPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA----GLVGA------MLTAAQN 213 (373)
T ss_pred CCCEEeEEcC--------CCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE----Eeccc------cccCCcc
Confidence 6654322011 111 25566777677888889999999999 7665311 00000 0000001
Q ss_pred ceeEEEEecCCCE-EEEEeCCeEEEEEccCCC-CceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeC--
Q 010256 343 SISDIKFARNGRH-ILSRDYMTLKLWDINMDS-GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-- 418 (514)
Q Consensus 343 ~i~~~~~s~~g~~-l~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-- 418 (514)
......+.+++.. ++....+.+.+.|+.... +.+..+........ ..- ........++++||++.|+.+..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~---~~~--~~p~g~~~~~~s~d~~~lyV~~~~~ 288 (373)
T 2mad_H 214 LLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRK---ADT--WRPGGWQQVAYLKSSDGIYLLTSEQ 288 (373)
T ss_pred eeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCccc---ccc--eecCceEeEEECCCCCEEEEEeccC
Confidence 1223456666544 334444889999986411 11222211110000 000 00001124789999998777543
Q ss_pred --------CCcEEEEecCCCceeeeeecCCCcceeEEEECCCCC-ceeecC-CCCeEEEeeC
Q 010256 419 --------SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP-SRPLGS-LSGVVRRVKG 470 (514)
Q Consensus 419 --------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~s-~d~~v~i~~~ 470 (514)
++.|.++|+.+++.. ..+... .....+.++||++ .++++. .++.|.+++.
T Consensus 289 ~~~~~~~~~~~V~VID~~t~~vv-~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~ 348 (373)
T 2mad_H 289 SAWKLHAAAKEVTSVTGLVGQTS-SQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYDA 348 (373)
T ss_pred CcccccCCCCeEEEEECCCCEEE-EEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence 357999999987443 444322 2577999999999 677776 5889988543
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3.1e-10 Score=114.78 Aligned_cols=160 Identities=8% Similarity=0.021 Sum_probs=95.6
Q ss_pred CccCeEEEEECCCCCEEEEe-c----CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC--
Q 010256 232 HDYHINSISNNSDGETFISA-D----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-- 304 (514)
Q Consensus 232 h~~~v~~~~~~~~~~~l~s~-~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d-- 304 (514)
|...+..+.|+|||++|+.. . ...|+++|+.++..... .+..+....... +++++..+++....+
T Consensus 232 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~-------~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~ 303 (693)
T 3iuj_A 232 QHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLL-------TVQGDLDADVSL-VDNKGSTLYLLTNRDAP 303 (693)
T ss_dssp GCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCE-------EEECSSSSCEEE-EEEETTEEEEEECTTCT
T ss_pred CCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceE-------EEeCCCCceEEE-EeccCCEEEEEECCCCC
Confidence 33456788999999988653 2 35899999976542222 223334444444 666664555555544
Q ss_pred -CeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE--eC--CeEEEEEccCCCCceeee
Q 010256 305 -GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR--DY--MTLKLWDINMDSGPVATF 379 (514)
Q Consensus 305 -g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~--~~--~~i~iwd~~~~~~~~~~~ 379 (514)
+.|..+|+.++.... .+. +..|...+. .|+++++.|+.. .+ ..|++||+. +.....+
T Consensus 304 ~~~l~~~d~~~~~~~~--~~~------------l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~--g~~~~~l 365 (693)
T 3iuj_A 304 NRRLVTVDAANPGPAH--WRD------------LIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE--GKRVREV 365 (693)
T ss_dssp TCEEEEEETTSCCGGG--CEE------------EECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT--SCEEEEE
T ss_pred CCEEEEEeCCCCCccc--cEE------------EecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC--CCeeEEe
Confidence 678899988754210 111 222223343 889999988764 33 378888876 3444444
Q ss_pred eeccccccccccccccCCccceeeEEEcCCCCEEEEEeCC----CcEEEEecCCCc
Q 010256 380 QVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS----NLFRVFGCSEGS 431 (514)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~i~iwd~~~~~ 431 (514)
...... .+..+.++++++.|+....+ +.++.||+.+++
T Consensus 366 ~~p~~~--------------~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 366 ALPGLG--------------SVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp CCSSSS--------------EEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred ecCCCc--------------eEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 322110 02256677888766655444 789999998764
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-09 Score=98.41 Aligned_cols=232 Identities=11% Similarity=0.044 Sum_probs=143.1
Q ss_pred ccccceEEEEEcCCCC-eEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccc
Q 010256 33 QEVDIISAIEFDKSGD-HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~-~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (514)
..........|+|+|+ +++++..++.|..|+.. ++. ..+..+.
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~------------------------~~~~~~~----------- 85 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV------------------------DVLLDAT----------- 85 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE------------------------EEEEESC-----------
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE------------------------EEEeCCC-----------
Confidence 4456678899999998 66777788999999863 321 1222222
Q ss_pred ccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
..+..+++ .++|+++++...++.|.+|+.. ++.........
T Consensus 86 -~~~~gl~~--d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~----------------------------------- 126 (305)
T 3dr2_A 86 -AFTNGNAV--DAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYA----------------------------------- 126 (305)
T ss_dssp -SCEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEEECEET-----------------------------------
T ss_pred -CccceeeE--CCCCCEEEEECCCCEEEEECCC-CCEEEEEeccC-----------------------------------
Confidence 45888999 6677766665566889999875 44322211000
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEE----e-c-------------C
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS----A-D-------------D 253 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s----~-~-------------d 253 (514)
......+++++++++|+++++ | . .
T Consensus 127 --------------------------------------~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~ 168 (305)
T 3dr2_A 127 --------------------------------------GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAH 168 (305)
T ss_dssp --------------------------------------TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSC
T ss_pred --------------------------------------CCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCC
Confidence 000123456777777777765 3 1 2
Q ss_pred CeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC------CeEEEEEcCCCccccccccceec
Q 010256 254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK------GSIRLIDMRQSALCDTHSKLFEE 327 (514)
Q Consensus 254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d------g~i~~wd~~~~~~~~~~~~~~~~ 327 (514)
+.|..||..+++.. .+ . .......++|+|++ +.|+.+... +.|.+|++..+... . ...+..
T Consensus 169 ~~v~~~d~~~g~~~-~~--------~-~~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~l~-~-~~~~~~ 235 (305)
T 3dr2_A 169 HSVYRLPPDGSPLQ-RM--------A-DLDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGALH-D-RRHFAS 235 (305)
T ss_dssp EEEEEECSSSCCCE-EE--------E-EESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTEEE-E-EEEEEC
T ss_pred CeEEEEcCCCCcEE-EE--------e-cCCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCCcc-C-CeEEEE
Confidence 45777776544322 11 1 23456789999999 666666554 78999998764311 0 111110
Q ss_pred cCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEc
Q 010256 328 QEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 407 (514)
Q Consensus 328 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 407 (514)
...+....++++++|++.++. .+.|.+|+.. ++.+..+..+.. +..++|+
T Consensus 236 -----------~~~~~pdgi~~d~~G~lwv~~-~~gv~~~~~~--g~~~~~~~~~~~----------------~~~~~f~ 285 (305)
T 3dr2_A 236 -----------VPDGLPDGFCVDRGGWLWSSS-GTGVCVFDSD--GQLLGHIPTPGT----------------ASNCTFD 285 (305)
T ss_dssp -----------CSSSCCCSEEECTTSCEEECC-SSEEEEECTT--SCEEEEEECSSC----------------CCEEEEC
T ss_pred -----------CCCCCCCeEEECCCCCEEEec-CCcEEEECCC--CCEEEEEECCCc----------------eeEEEEe
Confidence 011345678899999965554 4459999874 677766655432 1278999
Q ss_pred CCCCEEEEEeCCC
Q 010256 408 GDGGRVATGSYSN 420 (514)
Q Consensus 408 ~~~~~l~s~~~dg 420 (514)
++++.|..++.++
T Consensus 286 ~d~~~L~it~~~~ 298 (305)
T 3dr2_A 286 QAQQRLFITGGPC 298 (305)
T ss_dssp TTSCEEEEEETTE
T ss_pred CCCCEEEEEcCCe
Confidence 9999888777654
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.30 E-value=1.9e-09 Score=96.92 Aligned_cols=226 Identities=10% Similarity=0.008 Sum_probs=139.7
Q ss_pred cCeEEEEECCCCC-EEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEE
Q 010256 234 YHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (514)
Q Consensus 234 ~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd 311 (514)
.-..+..|++++. ++++. .++.|..||..++... .+ .....+.+++++|++ +++++ . ++.|.+||
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~--~~--------~~~~~~~~i~~~~dG-~l~v~-~-~~~l~~~d 79 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ--RV--------TMDAPVSSVALRQSG-GYVAT-I-GTKFCALN 79 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE--EE--------ECSSCEEEEEEBTTS-SEEEE-E-TTEEEEEE
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE--EE--------eCCCceEEEEECCCC-CEEEE-E-CCeEEEEE
Confidence 3456788999655 45555 7899999999855432 11 134678999999999 65554 3 67899999
Q ss_pred cCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE-e---------CCeEEEEEccCCCCceeeeee
Q 010256 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-D---------YMTLKLWDINMDSGPVATFQV 381 (514)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~---------~~~i~iwd~~~~~~~~~~~~~ 381 (514)
..+++.. .+...... .....+..++++|+|+++++. . ...-.||.+...++.. .+..
T Consensus 80 ~~~g~~~-----~~~~~~~~-------~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~-~~~~ 146 (297)
T 3g4e_A 80 WKEQSAV-----VLATVDND-------KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVK-KYFD 146 (297)
T ss_dssp TTTTEEE-----EEEECCTT-------CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEE-EEEE
T ss_pred CCCCcEE-----EEEecCCC-------CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEE-EEee
Confidence 9876531 11111000 011357889999999977763 1 1234666665423322 2221
Q ss_pred ccccccccccccccCCccceeeEEEcCCCCEEE-EEeCCCcEEEEec--CCCcee----eeeecCCCcceeEEEECCCCC
Q 010256 382 HEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA-TGSYSNLFRVFGC--SEGSAE----STTLEASKNPMRRQVQTPSRP 454 (514)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~dg~i~iwd~--~~~~~~----~~~~~~~~~~v~~~~~~~~~~ 454 (514)
.... ...++|+||++.|+ +.+.++.|.+|++ .++... ...+..+......+++.++|+
T Consensus 147 ~~~~---------------pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~ 211 (297)
T 3g4e_A 147 QVDI---------------SNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK 211 (297)
T ss_dssp EESB---------------EEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC
T ss_pred cccc---------------ccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC
Confidence 1111 12799999998765 5556789999987 344221 122223345677899999999
Q ss_pred ceeecCCCCeEEEeeC--CCCCccccCCcccccccceEEEEEc-CCCCEEEEEe
Q 010256 455 SRPLGSLSGVVRRVKG--ADNSALDANGNAFDFSMKLLHLAWH-PSENSIACAA 505 (514)
Q Consensus 455 ~l~s~s~d~~v~i~~~--~~~~~~~~~~~~~~~~~~v~~~~~s-pd~~~l~~~~ 505 (514)
+.++...++.|.+++- .++.. .+ ......+++++|. ||++.|.+++
T Consensus 212 lwva~~~~~~v~~~d~~tG~~~~-~i----~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 212 LWVACYNGGRVIRLDPVTGKRLQ-TV----KLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp EEEEEETTTEEEEECTTTCCEEE-EE----ECSSSBEEEEEEESGGGCEEEEEE
T ss_pred EEEEEcCCCEEEEEcCCCceEEE-EE----ECCCCCceEEEEeCCCCCEEEEEc
Confidence 8888777777777332 11111 11 1134679999998 8988877554
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.29 E-value=1e-09 Score=99.12 Aligned_cols=232 Identities=10% Similarity=0.013 Sum_probs=143.3
Q ss_pred CccCeEEEEECCCCC-EEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEE
Q 010256 232 HDYHINSISNNSDGE-TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 309 (514)
Q Consensus 232 h~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~ 309 (514)
.........|+|+++ ++++. .++.|..|+.. ++ .. .+......+..++++++| +++++...++.|.+
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~--------~~~~~~~~~~gl~~d~dG-~l~v~~~~~~~v~~ 111 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VD--------VLLDATAFTNGNAVDAQQ-RLVHCEHGRRAITR 111 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EE--------EEEESCSCEEEEEECTTS-CEEEEETTTTEEEE
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EE--------EEeCCCCccceeeECCCC-CEEEEECCCCEEEE
Confidence 334567899999998 55566 78999999884 33 21 122245668999999998 77666556688999
Q ss_pred EEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEE----Ee--------------CCeEEEEEccC
Q 010256 310 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS----RD--------------YMTLKLWDINM 371 (514)
Q Consensus 310 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~----~~--------------~~~i~iwd~~~ 371 (514)
|+.. ++. ..+..... ......+.+++++|+|+++++ |. .+.|..+|..+
T Consensus 112 ~~~~-g~~-----~~~~~~~~-------~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~ 178 (305)
T 3dr2_A 112 SDAD-GQA-----HLLVGRYA-------GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG 178 (305)
T ss_dssp ECTT-SCE-----EEEECEET-------TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS
T ss_pred ECCC-CCE-----EEEEeccC-------CCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCC
Confidence 9975 442 11111000 001135778999999998886 32 13566666543
Q ss_pred CCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCC------CcEEEEecCCCceee--ee-ecCCCc
Q 010256 372 DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS------NLFRVFGCSEGSAES--TT-LEASKN 442 (514)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d------g~i~iwd~~~~~~~~--~~-~~~~~~ 442 (514)
++... +. .... ...++|+||++.|+.+... +.|++|++..+. +. .. ......
T Consensus 179 -g~~~~-~~-~~~~---------------p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~ 239 (305)
T 3dr2_A 179 -SPLQR-MA-DLDH---------------PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDG 239 (305)
T ss_dssp -CCCEE-EE-EESS---------------EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSS
T ss_pred -CcEEE-Ee-cCCC---------------CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCC
Confidence 43322 22 1111 1278999999987776654 789999987543 11 11 112233
Q ss_pred ceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecCcEEEEe
Q 010256 443 PMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 443 ~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~i~~ 513 (514)
....+++.++|++.++. .++ |.+++-... .. ..+.....+.+++|+|+++.|.+++.++++.+.
T Consensus 240 ~pdgi~~d~~G~lwv~~-~~g-v~~~~~~g~----~~-~~~~~~~~~~~~~f~~d~~~L~it~~~~l~~~~ 303 (305)
T 3dr2_A 240 LPDGFCVDRGGWLWSSS-GTG-VCVFDSDGQ----LL-GHIPTPGTASNCTFDQAQQRLFITGGPCLWMLP 303 (305)
T ss_dssp CCCSEEECTTSCEEECC-SSE-EEEECTTSC----EE-EEEECSSCCCEEEECTTSCEEEEEETTEEEEEE
T ss_pred CCCeEEECCCCCEEEec-CCc-EEEECCCCC----EE-EEEECCCceeEEEEeCCCCEEEEEcCCeEEEEE
Confidence 45578899999965554 555 555221100 00 011112358899999999999998888887664
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-10 Score=105.68 Aligned_cols=179 Identities=9% Similarity=0.128 Sum_probs=122.2
Q ss_pred CeEEEEECCCCCEEEEecCCeEEEEeccCCCceee--eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEc
Q 010256 235 HINSISNNSDGETFISADDLRINLWNLEISNQSFN--IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~ 312 (514)
.++.+++++...++++|....+++|+++....... -.+..+.....+.. |+.++| ++ ++|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~-~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HG-DQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ET-TEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CC-CEEEEE-cCCcEEEEEc
Confidence 68899999999999999434677798764331000 00011111223556 999999 77 788888 8899999999
Q ss_pred CCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEE-EeCCeEEEEEccCCCCceeeeeecccccccccc
Q 010256 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCD 391 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 391 (514)
++.... .. ...|...+.++.+.+.. +++ .++|.|.+||++. +.... +..
T Consensus 114 ~sl~~~----~~------------~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~-~~~~~----~~~------- 163 (388)
T 1xip_A 114 EELSEF----RT------------VTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRT-KSTKQ----LAQ------- 163 (388)
T ss_dssp SSTTCE----EE------------EEECSSCEEEEEECSSE--EEEEETTSEEEEEETTT-CCEEE----EEE-------
T ss_pred hhhhcc----Cc------------cceeecceeeEEecCCC--EEEEECCCCEEEEEccC-Ccccc----ccC-------
Confidence 875432 11 12233457777776543 555 4669999999986 44332 111
Q ss_pred ccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCcee-eeee------c---CCCcceeEEEECCCCCceee
Q 010256 392 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE-STTL------E---ASKNPMRRQVQTPSRPSRPL 458 (514)
Q Consensus 392 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~------~---~~~~~v~~~~~~~~~~~l~s 458 (514)
.|.+++|||+| ++.|..||.+++|+...+... ..++ . +|...|.++.|.+++.++++
T Consensus 164 --------~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 164 --------NVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp --------SEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred --------CceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 14599999999 678899999999998876421 3344 2 47788999999999998877
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.3e-09 Score=98.68 Aligned_cols=288 Identities=9% Similarity=0.030 Sum_probs=168.8
Q ss_pred eeCCCCcEEEEeeC-C----CeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCC
Q 010256 121 CQSANSALYLLSTN-D----KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASN 195 (514)
Q Consensus 121 ~~~~~~~~l~s~~~-d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (514)
.|.+++..++++.. + +.|.++|..+++.......... + .+.++|||+.+
T Consensus 79 ~p~~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~----------------P-gia~SpDgk~l--------- 132 (426)
T 3c75_H 79 APAPDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFL----------------P-HPVAAEDGSFF--------- 132 (426)
T ss_dssp CCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSS----------------C-EEEECTTSSCE---------
T ss_pred cCCCCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCC----------------C-ceEECCCCCEE---------
Confidence 44566666666544 2 7999999999998777665432 3 67899999988
Q ss_pred CcccCCC----------CCCcEEeceeeccccccccccc--cccccccCccCeEEEEECCCCCEEEEe-c--CCeEEEEe
Q 010256 196 DSSFPPG----------GVSSLRLPVVVTSQETNLVAGC--RRIYAHAHDYHINSISNNSDGETFISA-D--DLRINLWN 260 (514)
Q Consensus 196 ~~~~~~~----------~~~~i~i~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~-~--d~~i~iwd 260 (514)
+++. .++.|.++| ....+....... ...+ ........+.|+|||++++.+ . ++.|.+.|
T Consensus 133 ---yVan~~~~~~~~G~~~~~VsviD-~~t~~vv~~I~v~g~~r~--~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID 206 (426)
T 3c75_H 133 ---AQASTVFERIARGKRTDYVEVFD-PVTFLPIADIELPDAPRF--LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVD 206 (426)
T ss_dssp ---EEEEEEEEETTEEEEEEEEEEEC-TTTCCEEEEEEETTCCCC--CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEE
T ss_pred ---EEEeccccccccCCCCCEEEEEE-CCCCcEEEEEECCCcccc--ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEE
Confidence 5544 356888888 333222111000 0000 001234568999999999887 3 68999999
Q ss_pred ccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecc
Q 010256 261 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 340 (514)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (514)
+.+.+....+ . .. . +....|++...+++.+.||.+.+.++.+++........+.....
T Consensus 207 ~~t~kvv~~I-~-----v~---g---~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~---------- 264 (426)
T 3c75_H 207 LEGKTFDRML-D-----VP---D---CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDE---------- 264 (426)
T ss_dssp TTTTEEEEEE-E-----CC---S---EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTS----------
T ss_pred CCCCeEEEEE-E-----cC---C---ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCC----------
Confidence 9976644332 1 11 1 13345555467777788888888888555432110011111110
Q ss_pred ccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCc--eeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe
Q 010256 341 IASISDIKFARNGRHILSRDY-MTLKLWDINMDSGP--VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 417 (514)
Q Consensus 341 ~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 417 (514)
.....+.+.+++..++.... +.|.+.|+.. ... +..+...... .+....... ....++++|+++.++...
T Consensus 265 -p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~-~~~~v~~~~~~~~~~--~i~~g~~p~---g~~~va~s~dg~rlyVa~ 337 (426)
T 3c75_H 265 -LLINHPAFSLRSGRLVWPTYTGKIFQADLTA-EGATFRAPIEALTEA--ERADDWRPG---GWQQTAYHRQSDRIYLLV 337 (426)
T ss_dssp -CBCSCCEECTTTCEEEEEBTTSEEEEEEECS-SCEEECCCEESSCTT--TGGGTEEEC---SSSCEEEEGGGTEEEEEE
T ss_pred -ceeeEeeecCCCCEEEEEeCCCcEEEEeccC-CceEEeeeeeecccc--ccccccccC---CceeeEEcCCCCEEEEEe
Confidence 01123567888887766554 8999999864 221 1111110000 000000000 011478999998777654
Q ss_pred C----------CCcEEEEecCCCceeeeeecCCCcceeEEEECCCCC-ceeecC-CCCeEEEeeCC
Q 010256 418 Y----------SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP-SRPLGS-LSGVVRRVKGA 471 (514)
Q Consensus 418 ~----------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~s-~d~~v~i~~~~ 471 (514)
. ++.|.++|+.+.+.. ..+... .....+.++|+++ ++++.. .++.|.+++..
T Consensus 338 ~~~~~gthk~~s~~VsVID~~T~kvv-~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~ 401 (426)
T 3c75_H 338 DQRDEWKHKAASRFVVVLNAETGERI-NKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAA 401 (426)
T ss_dssp EECCTTCTTSCEEEEEEEETTTCCEE-EEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred cccccccccCCCCEEEEEECCCCeEE-EEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECC
Confidence 2 357999999987544 444322 2477899999999 777776 58999995544
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=8.7e-09 Score=93.91 Aligned_cols=144 Identities=13% Similarity=0.078 Sum_probs=88.4
Q ss_pred CeEEEEECCCCCEEEEe-cC------CeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEE-EEEecCCe
Q 010256 235 HINSISNNSDGETFISA-DD------LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNML-AYSSSKGS 306 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~-~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l-~~~~~dg~ 306 (514)
.+++++++|+|+++++. .+ +.|..++ + .....+ .........++|+|++ +.+ ++.+.++.
T Consensus 135 ~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~-g~~~~~--------~~~~~~~~~i~~s~dg-~~lyv~~~~~~~ 202 (326)
T 2ghs_A 135 RSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--K-GKVTKL--------FADISIPNSICFSPDG-TTGYFVDTKVNR 202 (326)
T ss_dssp EEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--T-TEEEEE--------EEEESSEEEEEECTTS-CEEEEEETTTCE
T ss_pred CCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--C-CcEEEe--------eCCCcccCCeEEcCCC-CEEEEEECCCCE
Confidence 46789999999877765 32 3455555 2 322211 1123346789999999 555 55556789
Q ss_pred EEEEEcC--CC-ccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeec
Q 010256 307 IRLIDMR--QS-ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVH 382 (514)
Q Consensus 307 i~~wd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~ 382 (514)
|.+||+. ++ .... .+.+.. +.........++++++|.+.++... +.|.+||.. ++.+..+..+
T Consensus 203 I~~~d~~~~~Gl~~~~--~~~~~~---------~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~--g~~~~~i~~~ 269 (326)
T 2ghs_A 203 LMRVPLDARTGLPTGK--AEVFID---------STGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD--GNHIARYEVP 269 (326)
T ss_dssp EEEEEBCTTTCCBSSC--CEEEEE---------CTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT--CCEEEEEECS
T ss_pred EEEEEcccccCCcccC--ceEEEE---------CCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC--CCEEEEEECC
Confidence 9999986 44 3211 011110 0111234678999999988777644 889999983 6666665544
Q ss_pred cccccccccccccCCccceeeEEEc-CCCCEEEEEeC
Q 010256 383 EHLRPKLCDLYENDSIFDKFECCLS-GDGGRVATGSY 418 (514)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~~~ 418 (514)
... +.+++|+ ++++.|+.++.
T Consensus 270 ~~~---------------~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 270 GKQ---------------TTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp CSB---------------EEEEEEESTTSCEEEEEEB
T ss_pred CCC---------------cEEEEEecCCCCEEEEEec
Confidence 321 3489998 88887655543
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.23 E-value=5.7e-09 Score=98.02 Aligned_cols=259 Identities=9% Similarity=-0.014 Sum_probs=148.4
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccce
Q 010256 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (514)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (514)
.....|+|+++|+++++...++.|++||..++... ...... ...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~-----------------------~~~~~~-------------~~~ 174 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVT-----------------------TVHPGF-------------KGG 174 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEE-----------------------EEEETC-------------CBC
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEE-----------------------EeeccC-------------CCC
Confidence 56889999999998888778899999998766531 111111 223
Q ss_pred eEEEEeeCCCCcEEEEeeCCC--eEEEEEcCccEEEEEe-eccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 116 NKIRWCQSANSALYLLSTNDK--TIKLWKVQEKKVKKVF-DWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 116 ~~i~~~~~~~~~~l~s~~~d~--~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
. ++| .+++..|+++..++ .|.+++...+...... ..... ....+..++++|++..+
T Consensus 175 ~-ia~--~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~------------~~~~p~~iav~p~~g~l------ 233 (409)
T 3hrp_A 175 K-PAV--TKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGST------------FSGKIGAVALDETEEWL------ 233 (409)
T ss_dssp B-CEE--CTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTT------------SCSCCCBCEECTTSSEE------
T ss_pred c-eeE--ecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccch------------hcCCcEEEEEeCCCCeE------
Confidence 3 788 56777888887755 7888887765422222 11000 00122378888844433
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCe--EEEEECCC-CCEEEEe-cCCeEEEEeccCCCcee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHI--NSISNNSD-GETFISA-DDLRINLWNLEISNQSF 268 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v--~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~ 268 (514)
+....++.|..|+ .......... . ....++...- ..++|+|+ +.++++- .++.|+.|+.... ..
T Consensus 234 ------yv~d~~~~I~~~d-~~~~~~~~~~-~--~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~ 301 (409)
T 3hrp_A 234 ------YFVDSNKNFGRFN-VKTQEVTLIK-Q--LELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CE 301 (409)
T ss_dssp ------EEECTTCEEEEEE-TTTCCEEEEE-E--CCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EE
T ss_pred ------EEEECCCcEEEEE-CCCCCEEEEe-c--ccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EE
Confidence 3355567788777 3221110000 0 0011222222 38999996 5555555 7899999998632 22
Q ss_pred eeeccC-CCcc------cccCCceEEEEEecCCCcEEEEEe-cCCeEEEEEcCCCccccccccceeccC-CCCcc--cee
Q 010256 269 NIVDVK-PANM------EDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFEEQE-APGTR--SFF 337 (514)
Q Consensus 269 ~~~~~~-~~~~------~~~~~~i~~v~~~p~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~--~~~ 337 (514)
.+.... .... ...-.....++++|+| +++++-+ .++.|+.||+.++.. ..+.+.. ..... ...
T Consensus 302 ~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG-~lyvad~~~~~~I~~~~~~~G~v-----~~~~g~~~~~g~~~g~~~ 375 (409)
T 3hrp_A 302 WFCGSATQKTVQDGLREEALFAQPNGMTVDEDG-NFYIVDGFKGYCLRKLDILDGYV-----STVAGQVDVASQIDGTPL 375 (409)
T ss_dssp EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC-CEEEEETTTTCEEEEEETTTTEE-----EEEEECTTCBSCCCBSTT
T ss_pred EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC-CEEEEeCCCCCEEEEEECCCCEE-----EEEeCCCCCCCcCCCChh
Confidence 211110 0000 0012457899999999 7777777 789999999877653 2222210 00000 000
Q ss_pred eccccceeEEEEecCCCEEEEEeC-CeEEEEEc
Q 010256 338 TEIIASISDIKFARNGRHILSRDY-MTLKLWDI 369 (514)
Q Consensus 338 ~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~ 369 (514)
.........++++++|.++++-.. ++|+.+++
T Consensus 376 ~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 376 EATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred ceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 011246889999999877777544 78887765
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.8e-10 Score=104.27 Aligned_cols=184 Identities=10% Similarity=0.043 Sum_probs=123.5
Q ss_pred ceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccc-cccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCC
Q 010256 284 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT-HSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYM 362 (514)
Q Consensus 284 ~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~ 362 (514)
.+..+++++.. .++++|+.+ .+++|++........ ....++ ......+.. |+.++| ++.+|+++.++
T Consensus 39 ~~nlLais~~~-gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~-------~~~~~~lp~-V~~l~f--d~~~L~v~~~~ 106 (388)
T 1xip_A 39 SLQNLDISNSK-SLFVAASGS-KAVVGELQLLRDHITSDSTPLT-------FKWEKEIPD-VIFVCF--HGDQVLVSTRN 106 (388)
T ss_dssp CCBCEEEETTT-TEEEEEETT-EEEEEEHHHHHHHHHSSSCCCC-------CSEEEECTT-EEEEEE--ETTEEEEEESS
T ss_pred cccEEEEcCCC-CEEEEeCCC-EEEEEEhhHhhhhhcccccccc-------ceEEeeCCC-eeEEEE--CCCEEEEEcCC
Confidence 68899999998 788888887 556699865431000 000010 011223445 999999 89999999779
Q ss_pred eEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCc
Q 010256 363 TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKN 442 (514)
Q Consensus 363 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 442 (514)
.|++||+.. .........+... +.++.+.+. .+++++.||.|.+||++++... .+..
T Consensus 107 ~l~v~dv~s-l~~~~~~~~~~~~---------------v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~-----~~~~ 163 (388)
T 1xip_A 107 ALYSLDLEE-LSEFRTVTSFEKP---------------VFQLKNVNN--TLVILNSVNDLSALDLRTKSTK-----QLAQ 163 (388)
T ss_dssp EEEEEESSS-TTCEEEEEECSSC---------------EEEEEECSS--EEEEEETTSEEEEEETTTCCEE-----EEEE
T ss_pred cEEEEEchh-hhccCccceeecc---------------eeeEEecCC--CEEEEECCCCEEEEEccCCccc-----cccC
Confidence 999999986 4444444444322 225555543 3888899999999999976432 1456
Q ss_pred ceeEEEECCCCCceeecCCCCeEEEe--eCCCCC-ccccCC-ccc----ccccceEEEEEcCCCCEEEEE
Q 010256 443 PMRRQVQTPSRPSRPLGSLSGVVRRV--KGADNS-ALDANG-NAF----DFSMKLLHLAWHPSENSIACA 504 (514)
Q Consensus 443 ~v~~~~~~~~~~~l~s~s~d~~v~i~--~~~~~~-~~~~~~-~~~----~~~~~v~~~~~spd~~~l~~~ 504 (514)
.|++++|+|+| ++.|..||.++++ ++.... +.++.. ..+ ++...|.++.|.+++.++++=
T Consensus 164 ~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 164 NVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp SEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred CceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 89999999999 6778889999993 232210 111111 111 267899999999999999864
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.7e-08 Score=91.97 Aligned_cols=224 Identities=12% Similarity=0.009 Sum_probs=134.4
Q ss_pred eEEEEECCCCC-EEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcC
Q 010256 236 INSISNNSDGE-TFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (514)
Q Consensus 236 v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~ 313 (514)
..+..|+|++. ++++. .++.|..||.+++... .+ . ....+.++.++|++ +++++ +. ..|.+||..
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~------~---~~~~v~~i~~~~dg-~l~v~-~~-~gl~~~d~~ 117 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VH------A---LPFMGSALAKISDS-KQLIA-SD-DGLFLRDTA 117 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EE------E---CSSCEEEEEEEETT-EEEEE-ET-TEEEEEETT
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EE------E---CCCcceEEEEeCCC-eEEEE-EC-CCEEEEECC
Confidence 46788999855 45555 7899999999854321 11 1 23568999999998 66664 44 459999988
Q ss_pred CCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-----CeEEEEEccCCCCceeeeeeccccccc
Q 010256 314 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-----MTLKLWDINMDSGPVATFQVHEHLRPK 388 (514)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-----~~i~iwd~~~~~~~~~~~~~~~~~~~~ 388 (514)
+++.. .+..... ......+.+++++|+|+++++... ....||.+.. ++.. .+......
T Consensus 118 ~g~~~-----~~~~~~~-------~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~-g~~~-~~~~~~~~--- 180 (326)
T 2ghs_A 118 TGVLT-----LHAELES-------DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAK-GKVT-KLFADISI--- 180 (326)
T ss_dssp TCCEE-----EEECSST-------TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEET-TEEE-EEEEEESS---
T ss_pred CCcEE-----EEeeCCC-------CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeC-CcEE-EeeCCCcc---
Confidence 77631 1111000 001135889999999998776431 2334444432 4322 22211111
Q ss_pred cccccccCCccceeeEEEcCCCCEEEEE-eCCCcEEEEecC--CC-ce----eeeeecCCCcceeEEEECCCCCceeecC
Q 010256 389 LCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCS--EG-SA----ESTTLEASKNPMRRQVQTPSRPSRPLGS 460 (514)
Q Consensus 389 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~~--~~-~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~s 460 (514)
...++|+|||+.|+.+ +.++.|.+|++. ++ .. ....+.........+++.+++.+.++..
T Consensus 181 ------------~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~ 248 (326)
T 2ghs_A 181 ------------PNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW 248 (326)
T ss_dssp ------------EEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE
T ss_pred ------------cCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe
Confidence 1278999999876544 557899999985 44 21 1122233345567899999998877766
Q ss_pred CCCeEEEeeCCCCCccccCCcccccccceEEEEEc-CCCCEEEEEe
Q 010256 461 LSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWH-PSENSIACAA 505 (514)
Q Consensus 461 ~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s-pd~~~l~~~~ 505 (514)
.++.|.+++-... ...........+++++|+ ||++.|.+++
T Consensus 249 ~~~~v~~~d~~g~----~~~~i~~~~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 249 GEGAVDRYDTDGN----HIARYEVPGKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp TTTEEEEECTTCC----EEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred CCCEEEEECCCCC----EEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence 6666766332110 000111124578999998 9988776554
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=7.2e-10 Score=112.12 Aligned_cols=237 Identities=11% Similarity=0.095 Sum_probs=143.4
Q ss_pred cCccCeEEEEECCCCCEEEEe------cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC
Q 010256 231 AHDYHINSISNNSDGETFISA------DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK 304 (514)
Q Consensus 231 ~h~~~v~~~~~~~~~~~l~s~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d 304 (514)
+|...+..++|||||++|+.+ +..+|++||+.+++.... .+. ......++|+ |+ +.|+.++.+
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-------~~~--~~k~~~~~Ws-Dg-~~l~y~~~~ 194 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-------PLK--DVKFSGISWL-GN-EGFFYSSYD 194 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-------EEE--EEESCCCEEE-TT-TEEEEEESS
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-------ccC--CceeccEEEe-CC-CEEEEEEec
Confidence 455678889999999999854 235799999997764321 111 1112467899 98 777777776
Q ss_pred C-------------eEEEEEcCCCccccccccceeccCCCCccceeec-cccceeEEEEecCCCEEEEE-e---C-CeEE
Q 010256 305 G-------------SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTE-IIASISDIKFARNGRHILSR-D---Y-MTLK 365 (514)
Q Consensus 305 g-------------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~g~~l~~~-~---~-~~i~ 365 (514)
. .|++|++.+...... ..+.. .. |...+.++.|+|||++|+.. . . ..|+
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~--~v~~~----------~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~ 262 (693)
T 3iuj_A 195 KPDGSELSARTDQHKVYFHRLGTAQEDDR--LVFGA----------IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLY 262 (693)
T ss_dssp CCC-------CCCCEEEEEETTSCGGGCE--EEESC----------SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEE
T ss_pred CcccccccccCCCcEEEEEECCCCcccce--EEEec----------CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEE
Confidence 3 489999877653211 11111 11 22356789999999988753 2 2 5899
Q ss_pred EEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEE-eCC---CcEEEEecCCCcee-eeeecCC
Q 010256 366 LWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-SYS---NLFRVFGCSEGSAE-STTLEAS 440 (514)
Q Consensus 366 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~d---g~i~iwd~~~~~~~-~~~~~~~ 440 (514)
++|+..+......+..+.... ... |+++|..|+.. ..+ +.|..+++.++... ...+..|
T Consensus 263 ~~d~~~~~~~~~~l~~~~~~~---------------~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~ 326 (693)
T 3iuj_A 263 VKDLSQENAPLLTVQGDLDAD---------------VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE 326 (693)
T ss_dssp EEETTSTTCCCEEEECSSSSC---------------EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC
T ss_pred EEECCCCCCceEEEeCCCCce---------------EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC
Confidence 999986333455555443321 123 66676665544 333 67999999876431 1345556
Q ss_pred CcceeEEEECCCCCceeecCC-CCe--EEEee--CCCCCccccCCcccccccceEEEEEcCCCCEEEEEec-----CcEE
Q 010256 441 KNPMRRQVQTPSRPSRPLGSL-SGV--VRRVK--GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS-----NSLY 510 (514)
Q Consensus 441 ~~~v~~~~~~~~~~~l~s~s~-d~~--v~i~~--~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~-----~~~~ 510 (514)
...+. .++++++.|+.... ++. +++++ +.... .+ .+.....+..+.++|+++.|+.... ..++
T Consensus 327 ~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~--~l---~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~ 399 (693)
T 3iuj_A 327 RQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVR--EV---ALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLY 399 (693)
T ss_dssp CSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEE--EE---CCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEE
T ss_pred CCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeE--Ee---ecCCCceEEeeecCCCCCEEEEEecCCCCCCEEE
Confidence 55554 88888888776654 443 44422 22111 11 1123456778888999888775432 4555
Q ss_pred EEe
Q 010256 511 MYY 513 (514)
Q Consensus 511 i~~ 513 (514)
.|.
T Consensus 400 ~~d 402 (693)
T 3iuj_A 400 RFE 402 (693)
T ss_dssp EEC
T ss_pred EEE
Confidence 553
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.5e-08 Score=92.63 Aligned_cols=257 Identities=9% Similarity=0.010 Sum_probs=143.2
Q ss_pred EEEEeeCCCCcEEEEee----------CCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcc
Q 010256 117 KIRWCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (514)
Q Consensus 117 ~i~~~~~~~~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 186 (514)
.+.+ ++++++++++. .++.|.+||+.+++............. .....+..++++|||+.+
T Consensus 69 ~i~~--spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~--------~~g~~P~~ia~SpDGk~l 138 (368)
T 1mda_H 69 LAVA--GHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRF--------SVGPRVHIIGNCASSACL 138 (368)
T ss_dssp EEEE--CTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSC--------CBSCCTTSEEECTTSSCE
T ss_pred ceEE--CCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccc--------ccCCCcceEEEcCCCCEE
Confidence 6788 67888888875 478999999999988777654310000 000112388999999988
Q ss_pred ccccCCCCCCcccCCCC--CCcEEe--ceeeccccccccccccccccccCccCeEEEEECCCCCE-EEEe-cCCeEEEEe
Q 010256 187 ERNFGCASNDSSFPPGG--VSSLRL--PVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET-FISA-DDLRINLWN 260 (514)
Q Consensus 187 ~~~~~~~~~~~~~~~~~--~~~i~i--~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~-~d~~i~iwd 260 (514)
+++.. ...+.+ +| .... ..+..+. . +.+.|+++. +++. .|+.+.+.|
T Consensus 139 ------------yVan~~~~~~v~V~~iD-~~tv---------~~i~v~~---~--~~~~p~g~~~~~~~~~dg~~~~vd 191 (368)
T 1mda_H 139 ------------LFFLFGSSAAAGLSVPG-ASDD---------QLTKSAS---C--FHIHPGAAATHYLGSCPASLAASD 191 (368)
T ss_dssp ------------EEEECSSSCEEEEEETT-TEEE---------EEEECSS---C--CCCEEEETTEEECCCCTTSCEEEE
T ss_pred ------------EEEccCCCCeEEEEEEc-hhhc---------eEEECCC---c--eEEccCCCeEEEEEcCCCCEEEEE
Confidence 55543 456777 77 2220 0100000 0 112344432 3333 677777788
Q ss_pred ccC----CCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccce
Q 010256 261 LEI----SNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSF 336 (514)
Q Consensus 261 ~~~----~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (514)
+++ ......... ..+.-...+. . .+++ ..++..+. +.+.+.|+.+..... ...+...... ...
T Consensus 192 ~~~~~~~~~~v~~~~t---~~i~vg~~P~---~-~~~~-~~~~~vs~-~~V~viD~~~~~~~v--~~~~~~~~~~--~~~ 258 (368)
T 1mda_H 192 LAAAPAAAGIVGAQCT---GAQNCSSQAA---Q-ANYP-GMLVWAVA-SSILQGDIPAAGATM--KAAIDGNESG--RKA 258 (368)
T ss_dssp CCSSCCCCEECCCCSC---TTSCBCSCCE---E-ETTT-TEEEECBS-SCCEEEECCSSCCEE--ECCCCSSCTH--HHH
T ss_pred CccccccCCeEEEEee---eeeeCCCCcc---c-cccC-CEEEEEcC-CEEEEEECCCCcceE--EEEEEecccc--ccc
Confidence 775 222110000 0111122333 3 6666 45555556 899999986532110 1111110000 000
Q ss_pred eeccccceeEEEEecCCCEEEEE-e-C--------CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEE
Q 010256 337 FTEIIASISDIKFARNGRHILSR-D-Y--------MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 406 (514)
Q Consensus 337 ~~~~~~~i~~~~~s~~g~~l~~~-~-~--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 406 (514)
..........++++|+++.++.+ . . ..+.++|+.+ .+.+.++....... .++|
T Consensus 259 ~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t-~~vv~~i~vg~~p~----------------gi~~ 321 (368)
T 1mda_H 259 DNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPISNGHDSD----------------AIIA 321 (368)
T ss_dssp TTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS-CCEEECCEEEEEEC----------------EEEE
T ss_pred cccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCC-CeEEEEEECCCCcc----------------eEEE
Confidence 00000122236899999888763 2 2 2566999998 88888776655332 8999
Q ss_pred cCCCC-EEEEEe-CCCcEEEEecCCCceeeeeecCCC
Q 010256 407 SGDGG-RVATGS-YSNLFRVFGCSEGSAESTTLEASK 441 (514)
Q Consensus 407 s~~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~ 441 (514)
+|||+ ++++.. .++.|.++|+.+++. ..++....
T Consensus 322 s~Dg~~l~va~~~~~~~VsVID~~t~kv-v~~I~vg~ 357 (368)
T 1mda_H 322 AQDGASDNYANSAGTEVLDIYDAASDQD-QSSVELDK 357 (368)
T ss_dssp CCSSSCEEEEEETTTTEEEEEESSSCEE-EEECCCCS
T ss_pred CCCCCEEEEEccCCCCeEEEEECCCCcE-EEEEECCC
Confidence 99998 455666 589999999998743 35555443
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.13 E-value=6.8e-08 Score=88.78 Aligned_cols=169 Identities=16% Similarity=0.183 Sum_probs=90.8
Q ss_pred EEEECCCCCEEEEec--------------------CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEE--ecCCC
Q 010256 238 SISNNSDGETFISAD--------------------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF--HPTHC 295 (514)
Q Consensus 238 ~~~~~~~~~~l~s~~--------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~--~p~~~ 295 (514)
.+.|+|+++.+++++ +.+|.+||+.+.+ ....++ +.........+.| +|++
T Consensus 192 d~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k-~~~tI~-----vg~~g~~P~~i~f~~~Pdg- 264 (462)
T 2ece_A 192 DFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK-RIHSLT-----LGEENRMALELRPLHDPTK- 264 (462)
T ss_dssp CEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE-EEEEEE-----SCTTEEEEEEEEECSSTTC-
T ss_pred eEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc-EeeEEe-----cCCCCCccceeEeeECCCC-
Confidence 456677777777663 7899999998653 333221 1111233456666 9999
Q ss_pred cEEEEEe------cCCeEEEEEcCCCccccccccceeccCCC--Ccc----ceeeccccceeEEEEecCCCEEEEEeC--
Q 010256 296 NMLAYSS------SKGSIRLIDMRQSALCDTHSKLFEEQEAP--GTR----SFFTEIIASISDIKFARNGRHILSRDY-- 361 (514)
Q Consensus 296 ~~l~~~~------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~i~~~~~s~~g~~l~~~~~-- 361 (514)
+++++++ .+++|.+|....+... ..+.++....+ ... .-+.+-......+.+||||++|+++..
T Consensus 265 ~~aYV~~e~~~~~Lss~V~v~~~d~g~~~--~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~ 342 (462)
T 2ece_A 265 LMGFINMVVSLKDLSSSIWLWFYEDGKWN--AEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGI 342 (462)
T ss_dssp CEEEEEEEEETTTCCEEEEEEEEETTEEE--EEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTT
T ss_pred CEEEEEEeeeccCCCceEEEEEecCCcee--EEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCC
Confidence 5555554 5678888777654321 12222111100 000 000011235788999999999998753
Q ss_pred CeEEEEEccCCCC--ceeeeeeccccccccccccccCCc-cceeeEEEcCCCCEEEEEe
Q 010256 362 MTLKLWDINMDSG--PVATFQVHEHLRPKLCDLYENDSI-FDKFECCLSGDGGRVATGS 417 (514)
Q Consensus 362 ~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~ 417 (514)
+.|.+||+...++ .+..+...... ...... ....+ ..=..++++|||++|+++.
T Consensus 343 d~VavfdV~d~~~~~lv~~I~tGG~~-~~~~~~-~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 343 GEVRQYDISNPFKPVLTGKVKLGGIF-HRADHP-AGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TEEEEEECSSTTSCEEEEEEECBTTT-TCBCCT-TSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CEEEEEEecCCCCcEEEEEEEeCCee-cccccc-ccccCCCCCCEEEEcCCCCEEEEEc
Confidence 8999999864332 23333222100 000000 00000 0001789999999998887
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.8e-08 Score=92.64 Aligned_cols=254 Identities=7% Similarity=-0.049 Sum_probs=148.3
Q ss_pred cCeEEEEECCCCCEEEEe---cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEec-----CC
Q 010256 234 YHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS-----KG 305 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~-----dg 305 (514)
..+..++++++|+++++. .++.++||.+.+ .......... .....+...+.++++++++ +++++-.. ++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~-g~~~~~p~~~-~~~~~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ-DGLIPFPPQS-GNAIITFDTVLGIKSDGNG-IVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET-TEEEESCCCC-SSCCCCCSCEEEEEECSSS-EEEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECC-CCeecCCCcc-cCcccceeEeeEEEEcCCC-cEEEEcCCCCcCCCC
Confidence 578899999999999985 245356666652 2222110000 1122355679999999998 66665443 57
Q ss_pred eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEE-EEEe----CCeEEEEEccCCCCceeeee
Q 010256 306 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI-LSRD----YMTLKLWDINMDSGPVATFQ 380 (514)
Q Consensus 306 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l-~~~~----~~~i~iwd~~~~~~~~~~~~ 380 (514)
.|.+||+.+++.. +.+...... ..+...+..+++++++..+ ++.. ++.|.+||+.. ++....+.
T Consensus 94 ~i~~~d~~tg~~~----~~~~~~~~~------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~-g~~~r~~~ 162 (343)
T 2qe8_A 94 KLVAWDTLNNQLS----RVIYLPPPI------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQT-GLAARVLQ 162 (343)
T ss_dssp EEEEEETTTTEEE----EEEECCTTT------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTT-CCEEEECT
T ss_pred eEEEEECCCCeEE----EEEECChhh------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCC-CCEEEEec
Confidence 9999999988752 233321110 1122456889999865454 4433 38999999986 65555443
Q ss_pred eccccccc-----cc--ccc---ccCC----ccceeeEEEcCCCCEEEEEeCCC-cEEEEecC---CCc----eee--ee
Q 010256 381 VHEHLRPK-----LC--DLY---ENDS----IFDKFECCLSGDGGRVATGSYSN-LFRVFGCS---EGS----AES--TT 436 (514)
Q Consensus 381 ~~~~~~~~-----~~--~~~---~~~~----~~~v~~~~~s~~~~~l~s~~~dg-~i~iwd~~---~~~----~~~--~~ 436 (514)
.|...... .. .++ .... ......++|+|||+.|+.+..++ .++.++.. .+. ... ..
T Consensus 163 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 242 (343)
T 2qe8_A 163 GYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIE 242 (343)
T ss_dssp TCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCE
T ss_pred CCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceE
Confidence 32211110 00 000 0000 01245799999999888877665 55555432 110 000 01
Q ss_pred ecCCCcceeEEEECCCCCceeecCCCCeEEEeeC--CCCCccccCCcccccccceEEEEEcCCCCEEEEEe
Q 010256 437 LEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKG--ADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 505 (514)
Q Consensus 437 ~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~--~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~ 505 (514)
..++......+++.+++.++++...++.|.+++. .+.. .+.. .........+++.++++++++.+
T Consensus 243 ~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~--~~~~--~~~~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 243 RYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYK--LLVT--DEKLSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp EEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEE--EEEE--CGGGSCEEEEEECTTSCEEEEEC
T ss_pred ecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEE--EEEE--CCceecCCeeEECCCCcEEEEeC
Confidence 2233445667999999999999988898888443 1111 0110 11245688999999998877765
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=6.5e-08 Score=96.96 Aligned_cols=200 Identities=9% Similarity=0.088 Sum_probs=116.7
Q ss_pred EEEEECCCCCEEEEe-cCC-------------------eEEEEeccCCCceeeeeccCCCccc--ccCCceEEEEEecCC
Q 010256 237 NSISNNSDGETFISA-DDL-------------------RINLWNLEISNQSFNIVDVKPANME--DLTEVITSAEFHPTH 294 (514)
Q Consensus 237 ~~~~~~~~~~~l~s~-~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~i~~v~~~p~~ 294 (514)
..++++|++..++.+ .++ .|..+|.++++...... ..+...- .......-+....+|
T Consensus 246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~-~~~~d~wd~~~~~~p~l~~~~~dG 324 (677)
T 1kb0_A 246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQ-ETPGDNWDYTSTQPMILADIKIAG 324 (677)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE-SSTTCCSCCCCCSCCEEEEEEETT
T ss_pred cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEe-cCCCcccccccCCCcEEEecccCC
Confidence 367889988888877 543 59999999887665431 1110000 001222333444465
Q ss_pred C--cEEEEEecCCeEEEEEcCCCccccccccc-------eeccCCCC----------ccceee---ccccceeEEEEecC
Q 010256 295 C--NMLAYSSSKGSIRLIDMRQSALCDTHSKL-------FEEQEAPG----------TRSFFT---EIIASISDIKFARN 352 (514)
Q Consensus 295 ~--~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-------~~~~~~~~----------~~~~~~---~~~~~i~~~~~s~~ 352 (514)
. ..++.++.+|.+.++|.++++.+...... ++....+. ...... +.. .-..++++|+
T Consensus 325 ~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~-~w~~~a~dp~ 403 (677)
T 1kb0_A 325 KPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAH-NWHPMSFNPQ 403 (677)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSS-CSSCCEEETT
T ss_pred cEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCccccc-CCCCceEcCC
Confidence 2 47888999999999999999875331100 00000000 000000 000 1135788998
Q ss_pred CCEEEEEe--------------------------------------------CCeEEEEEccCCCCceeeeeeccccccc
Q 010256 353 GRHILSRD--------------------------------------------YMTLKLWDINMDSGPVATFQVHEHLRPK 388 (514)
Q Consensus 353 g~~l~~~~--------------------------------------------~~~i~iwd~~~~~~~~~~~~~~~~~~~~ 388 (514)
+.++++.. .+.|..||+.+ ++.+-.+......
T Consensus 404 ~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~~~~~--- 479 (677)
T 1kb0_A 404 TGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA-QKAAWSVEHVSPW--- 479 (677)
T ss_dssp TTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT-TEEEEEEEESSSC---
T ss_pred CCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCC-CcEEeecCCCCCC---
Confidence 88777631 16788999987 7766665533211
Q ss_pred cccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeec-CCCcceeEEEECCCCCce
Q 010256 389 LCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE-ASKNPMRRQVQTPSRPSR 456 (514)
Q Consensus 389 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l 456 (514)
....+..++.+++.++.||.+++||..+++.+ ..+. ++......+.+.++|+.+
T Consensus 480 -------------~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~l-w~~~~~~~~~~~p~~y~~~G~~~ 534 (677)
T 1kb0_A 480 -------------NGGTLTTAGNVVFQGTADGRLVAYHAATGEKL-WEAPTGTGVVAAPSTYMVDGRQY 534 (677)
T ss_dssp -------------CCCEEEETTTEEEEECTTSEEEEEETTTCCEE-EEEECSSCCCSCCEEEEETTEEE
T ss_pred -------------cCcceEeCCCEEEEECCCCcEEEEECCCCcee-eeeeCCCCcccCCEEEEeCCEEE
Confidence 14456678888999999999999999998654 4443 332233345566676543
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.06 E-value=9.7e-08 Score=95.91 Aligned_cols=198 Identities=12% Similarity=0.068 Sum_probs=115.2
Q ss_pred EEEECCCCCEEEEe-cCC-------------------eEEEEeccCCCceeeeeccCCCcccc--cCCceEEEEEecCCC
Q 010256 238 SISNNSDGETFISA-DDL-------------------RINLWNLEISNQSFNIVDVKPANMED--LTEVITSAEFHPTHC 295 (514)
Q Consensus 238 ~~~~~~~~~~l~s~-~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~i~~v~~~p~~~ 295 (514)
.++++|++.+++.+ .++ .|..+|.++++...... ..+..... ....+.......+|.
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~-~~~~d~wd~~~~~~~~l~d~~~~G~ 317 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQ-TTPGDAWDYTATQHMILAELPIDGK 317 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEE-SSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeee-cCCcccccccCCCCcEEEeeccCCc
Confidence 57888988888888 665 49999999887665431 11100000 112222223333551
Q ss_pred --cEEEEEecCCeEEEEEcCCCcccccccc---ceecc----C--------------CCCccceeeccc--cceeEEEEe
Q 010256 296 --NMLAYSSSKGSIRLIDMRQSALCDTHSK---LFEEQ----E--------------APGTRSFFTEII--ASISDIKFA 350 (514)
Q Consensus 296 --~~l~~~~~dg~i~~wd~~~~~~~~~~~~---~~~~~----~--------------~~~~~~~~~~~~--~~i~~~~~s 350 (514)
..++.++.+|.++++|.++++.+..... .+... . .........+.. ..-..++|+
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d 397 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN 397 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence 2788899999999999999987522100 00000 0 000000000000 012347888
Q ss_pred cCCCEEEEEe----------------------------------------------CCeEEEEEccCCCCceeeeeeccc
Q 010256 351 RNGRHILSRD----------------------------------------------YMTLKLWDINMDSGPVATFQVHEH 384 (514)
Q Consensus 351 ~~g~~l~~~~----------------------------------------------~~~i~iwd~~~~~~~~~~~~~~~~ 384 (514)
|+..++++.. ++.|..||+.+ ++.+-.+..+..
T Consensus 398 p~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~~~~ 476 (689)
T 1yiq_A 398 PDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK-QQAAWEVPYVTI 476 (689)
T ss_dssp TTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT-TEEEEEEEESSS
T ss_pred CCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC-CCeEeEccCCCC
Confidence 8877777631 26688899887 777666655432
Q ss_pred cccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCC-CcceeEEEECCCCC
Q 010256 385 LRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS-KNPMRRQVQTPSRP 454 (514)
Q Consensus 385 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~ 454 (514)
.. .-.+...+.+++.++.||.|+.||.++++.+ ..++.. ......+.+..+|+
T Consensus 477 ~~----------------~g~~~tagglvf~gt~dg~l~a~D~~tG~~l-w~~~~~~~~~~~p~ty~~~G~ 530 (689)
T 1yiq_A 477 FN----------------GGTLSTAGNLVFEGSADGRVIAYAADTGEKL-WEQPAASGVMAAPVTYSVDGE 530 (689)
T ss_dssp CC----------------CCEEEETTTEEEEECTTSEEEEEETTTCCEE-EEEECSSCCCSCCEEEEETTE
T ss_pred cc----------------CccceECCCEEEEECCCCcEEEEECCCCccc-eeeeCCCCcccCceEEEECCE
Confidence 21 3355667889999999999999999999654 344432 22223456666666
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.3e-05 Score=80.69 Aligned_cols=385 Identities=10% Similarity=0.031 Sum_probs=206.7
Q ss_pred eEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeE
Q 010256 38 ISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINK 117 (514)
Q Consensus 38 V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~ 117 (514)
|.++...++|.+.+ |+.++-|..|+..+++.. ... ...+. ..|.+
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~---------------------~~~-~~~~~------------~~i~~ 219 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFE---------------------KVI-PILGT------------KQIQA 219 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEE---------------------ECC-----C------------CCEEE
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEE---------------------Eec-CCCCC------------CeeEE
Confidence 88998888886555 555444888887655421 000 00011 45777
Q ss_pred EEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCc
Q 010256 118 IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDS 197 (514)
Q Consensus 118 i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 197 (514)
+.. ..++ .+..++.++-+.+||..+++......... ....+....|. ++...++|...
T Consensus 220 i~~--d~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~-~~~~l~~~~i~-------~i~~d~~g~lW----------- 277 (795)
T 4a2l_A 220 ILQ--QSPT-RIWVATEGAGLFLINPKTKEIKNYLHSPS-NPKSISSNYIR-------SLAMDSQNRLW----------- 277 (795)
T ss_dssp EEE--EETT-EEEEEEBSSCEEEEETTTTEEEEECCCTT-CTTSCSCSBEE-------EEEECTTSCEE-----------
T ss_pred EEE--cCCC-CEEEEECCCCeEEEeCCCCeEEEeecCCC-CccccCCCeEE-------EEEEcCCCCEE-----------
Confidence 776 3444 45556655558899998877554322110 01111223333 55556666653
Q ss_pred ccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCc
Q 010256 198 SFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPAN 277 (514)
Q Consensus 198 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~ 277 (514)
.++.. -|.+|+ ..................-....|.++...++|.+-+...++-|..|+..+... ..+...+..
T Consensus 278 --igt~~-Gl~~~~-~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~--~~~~~~~~~ 351 (795)
T 4a2l_A 278 --IGTFN-DLNIYH-EGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRF--KNIRNIPYK 351 (795)
T ss_dssp --EEESS-CEEEEE-TTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSS--EEECCCTTS
T ss_pred --EEeCC-hhheEc-CCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccc--eEEcCCCCC
Confidence 33333 466555 111110000000000001234679999999999877666767788888764321 111111100
Q ss_pred ccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccC-CCCccceeeccccceeEEEEecCCCEE
Q 010256 278 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE-APGTRSFFTEIIASISDIKFARNGRHI 356 (514)
Q Consensus 278 ~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~s~~g~~l 356 (514)
-.-....|.++...++| + |-.|+.++-|..||..++... .+.... .+. ..+ ....|.++...++|+.|
T Consensus 352 ~~l~~~~V~~i~~d~~g-~-lWiGt~~~Gl~~~~~~~~~~~-----~~~~~~~~~~--~~l--~~~~v~~i~~d~~g~~l 420 (795)
T 4a2l_A 352 NSLSDNVVSCIVEDKDK-N-LWIGTNDGGLNLYNPITQRFT-----SYTLQEDESA--RGI--GSNNIKAVYVDEKKSLV 420 (795)
T ss_dssp SSCSCSSEEEEEECTTS-C-EEEEESSSCEEEECTTTCCEE-----EECCC--------CC--SCSCEEEEEEETTTTEE
T ss_pred CCCCCCeeEEEEECCCC-C-EEEEECCCCeEEEcCCCCcEE-----EEecCCCCcc--cCC--CCccEEEEEEcCCCCEE
Confidence 01124568999998887 4 555888888999998765421 111100 000 000 12468999999999844
Q ss_pred EEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeee
Q 010256 357 LSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAEST 435 (514)
Q Consensus 357 ~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 435 (514)
..|. ++.|.+||..+ ++ ...+...... .... .|.++...++|++.+.. . +.+.+||..++.....
T Consensus 421 Wigt~~~Gl~~~d~~~-~~-~~~~~~~~~~-------l~~~---~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~ 486 (795)
T 4a2l_A 421 YIGTHAGGLSILHRNS-GQ-VENFNQRNSQ-------LVNE---NVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFTTI 486 (795)
T ss_dssp EEEETTTEEEEEETTT-CC-EEEECTTTSC-------CSCS---CEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEEEC
T ss_pred EEEeCcCceeEEeCCC-Cc-EEEeecCCCC-------cCCC---eeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEEEc
Confidence 4444 47799999875 33 3333211000 0011 24578888888866544 4 4588999876533211
Q ss_pred ee-----cCCCcceeEEEECCCCCceeecCCCCeEEE-eeCCCCCccccC-CcccccccceEEEEEcCCCCEEEEEecCc
Q 010256 436 TL-----EASKNPMRRQVQTPSRPSRPLGSLSGVVRR-VKGADNSALDAN-GNAFDFSMKLLHLAWHPSENSIACAASNS 508 (514)
Q Consensus 436 ~~-----~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i-~~~~~~~~~~~~-~~~~~~~~~v~~~~~spd~~~l~~~~~~~ 508 (514)
.. .-....|.++...+++.+.+... .|-.++ ..+... ..... ....-....|.++...++|++.+ ++.++
T Consensus 487 ~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~G 563 (795)
T 4a2l_A 487 EKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWV-GTREG 563 (795)
T ss_dssp CBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEE-EESSC
T ss_pred cccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEE-EeCCC
Confidence 11 11235688898998888766555 665555 222221 10000 00111346789999999998554 44458
Q ss_pred EEEEe
Q 010256 509 LYMYY 513 (514)
Q Consensus 509 ~~i~~ 513 (514)
++.|.
T Consensus 564 l~~~d 568 (795)
T 4a2l_A 564 FYCFN 568 (795)
T ss_dssp EEEEE
T ss_pred ceeEC
Confidence 88875
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.7e-07 Score=83.97 Aligned_cols=240 Identities=9% Similarity=-0.028 Sum_probs=132.3
Q ss_pred ccCCCCCCcEEeceeeccccccccccccc--ccc-ccCccCeEEEEECCCCCEEEEe-cC------CeEEEEeccCCCce
Q 010256 198 SFPPGGVSSLRLPVVVTSQETNLVAGCRR--IYA-HAHDYHINSISNNSDGETFISA-DD------LRINLWNLEISNQS 267 (514)
Q Consensus 198 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~--~~~-~~h~~~v~~~~~~~~~~~l~s~-~d------~~i~iwd~~~~~~~ 267 (514)
++.+..++.|.++|+..........+... .+. ..-......+...|+| +++++ .+ +.|.++|.++.+..
T Consensus 99 ~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~ 177 (462)
T 2ece_A 99 IVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPL 177 (462)
T ss_dssp EEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEE
T ss_pred EEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEE
Confidence 36677788999998222211111111110 000 0011234567788999 77776 44 78999999876644
Q ss_pred eeeeccCCCccccc-CCceEEEEEecCCCcEEEEEe-------------------cCCeEEEEEcCCCccccccccceec
Q 010256 268 FNIVDVKPANMEDL-TEVITSAEFHPTHCNMLAYSS-------------------SKGSIRLIDMRQSALCDTHSKLFEE 327 (514)
Q Consensus 268 ~~~~~~~~~~~~~~-~~~i~~v~~~p~~~~~l~~~~-------------------~dg~i~~wd~~~~~~~~~~~~~~~~ 327 (514)
.++ . .... ...-+.+-|+|++ +.+++.. .+.+|.+||+.+++. ..++..
T Consensus 178 ~~~-~-----~~~~~~~~~Yd~~~~p~~-~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~----~~tI~v 246 (462)
T 2ece_A 178 GKW-E-----IDRGDQYLAYDFWWNLPN-EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR----IHSLTL 246 (462)
T ss_dssp EEC-C-----SBCTTCCCCCCEEEETTT-TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE----EEEEES
T ss_pred EEE-c-----cCCCCccccceEEECCCC-CEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE----eeEEec
Confidence 332 1 1111 2233468889999 7777764 368999999998754 233332
Q ss_pred cCCCCccceeeccccceeEEEE--ecCCCEEEEE-e-----C-CeEEEEEccCCCCc--eeeeeeccc-ccccccccccc
Q 010256 328 QEAPGTRSFFTEIIASISDIKF--ARNGRHILSR-D-----Y-MTLKLWDINMDSGP--VATFQVHEH-LRPKLCDLYEN 395 (514)
Q Consensus 328 ~~~~~~~~~~~~~~~~i~~~~~--s~~g~~l~~~-~-----~-~~i~iwd~~~~~~~--~~~~~~~~~-~~~~~~~~~~~ 395 (514)
.. .......+.| +|++++++.+ . . ++|.+|..+. +.. .+.+..... ....+..+...
T Consensus 247 g~----------~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~-g~~~~~~vIdi~~~~v~~~lp~~~~~ 315 (462)
T 2ece_A 247 GE----------ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED-GKWNAEKVIEIPAEPLEGNLPEILKP 315 (462)
T ss_dssp CT----------TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET-TEEEEEEEEEECCEECCSSCCGGGGG
T ss_pred CC----------CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC-CceeEEEEEeCCCccccccccccccc
Confidence 10 0023445555 9999988764 3 4 7888877763 321 111111110 00000000000
Q ss_pred -CC-ccceeeEEEcCCCCEEEEEe-CCCcEEEEecCCCc--eeeeeecCCC--------------cceeEEEECCCCCce
Q 010256 396 -DS-IFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGS--AESTTLEASK--------------NPMRRQVQTPSRPSR 456 (514)
Q Consensus 396 -~~-~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~--~~~~~~~~~~--------------~~v~~~~~~~~~~~l 456 (514)
.. -.....+.+|+||++|.++. ..+.|.+||+.... .+...+.... ...+.+.++|||++|
T Consensus 316 f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~L 395 (462)
T 2ece_A 316 FKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRV 395 (462)
T ss_dssp GTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEE
T ss_pred cccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEE
Confidence 00 00123799999999988765 46899999986332 2222222110 135789999999988
Q ss_pred eecC
Q 010256 457 PLGS 460 (514)
Q Consensus 457 ~s~s 460 (514)
.++.
T Consensus 396 yVaN 399 (462)
T 2ece_A 396 YVTN 399 (462)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 7775
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=7.3e-08 Score=88.16 Aligned_cols=256 Identities=10% Similarity=0.054 Sum_probs=139.1
Q ss_pred EEEEcCCCCeEEEec----------CCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccC-CCccccccc
Q 010256 40 AIEFDKSGDHLATGD----------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSH-EPEFDYLKS 108 (514)
Q Consensus 40 ~~~~s~~g~~l~tg~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~~~~~~~ 108 (514)
.++++|||++|+++. .++.|.+||..+.+.. .++... .+.+.
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv-----------------------~~I~v~~~~~~~---- 121 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI-----------------------ADIELPDAPRFS---- 121 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE-----------------------EEEEETTSCSCC----
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEE-----------------------EEEECCCccccc----
Confidence 799999999998886 3688999999887743 222111 00000
Q ss_pred cccccceeEEEEeeCCCCcEEEEeeC--CCeEEE--EEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCC
Q 010256 109 LEIEEKINKIRWCQSANSALYLLSTN--DKTIKL--WKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGG 184 (514)
Q Consensus 109 ~~~~~~v~~i~~~~~~~~~~l~s~~~--d~~i~i--w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 184 (514)
....-..+.+ ++||++++++.. +..+.+ +|..+ ........ +....|+++
T Consensus 122 --~g~~P~~ia~--SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-------------------~~~~~p~g~ 175 (368)
T 1mda_H 122 --VGPRVHIIGN--CASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-------------------CFHIHPGAA 175 (368)
T ss_dssp --BSCCTTSEEE--CTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS-------------------CCCCEEEET
T ss_pred --cCCCcceEEE--cCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC-------------------ceEEccCCC
Confidence 0012345677 678888888864 467888 88877 22222210 112234443
Q ss_pred ccccccCCCCCCcccCCCCCCcEEeceeeccc---cccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEe
Q 010256 185 CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQ---ETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWN 260 (514)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~---~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd 260 (514)
.. +++.+.++.+.+.+ +... +..........+ .-...+. . .+++..++.. . +.+.+.|
T Consensus 176 ~~-----------~~~~~~dg~~~~vd-~~~~~~~~~~v~~~~t~~i-~vg~~P~---~-~~~~~~~~~vs~-~~V~viD 237 (368)
T 1mda_H 176 AT-----------HYLGSCPASLAASD-LAAAPAAAGIVGAQCTGAQ-NCSSQAA---Q-ANYPGMLVWAVA-SSILQGD 237 (368)
T ss_dssp TE-----------EECCCCTTSCEEEE-CCSSCCCCEECCCCSCTTS-CBCSCCE---E-ETTTTEEEECBS-SCCEEEE
T ss_pred eE-----------EEEEcCCCCEEEEE-CccccccCCeEEEEeeeee-eCCCCcc---c-cccCCEEEEEcC-CEEEEEE
Confidence 32 13444556555544 2110 000000000011 1112233 3 5555555555 7 9999999
Q ss_pred ccCCCc-eeeeeccCCCcccc---cCCceEEEEEecCCCcEEEEEec---------CCeEEEEEcCCCccccccccceec
Q 010256 261 LEISNQ-SFNIVDVKPANMED---LTEVITSAEFHPTHCNMLAYSSS---------KGSIRLIDMRQSALCDTHSKLFEE 327 (514)
Q Consensus 261 ~~~~~~-~~~~~~~~~~~~~~---~~~~i~~v~~~p~~~~~l~~~~~---------dg~i~~wd~~~~~~~~~~~~~~~~ 327 (514)
...... ....+.+....... .......++++|++ ..++.+.. ++.+.++|+.+.+.. ..+..
T Consensus 238 ~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg-~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv----~~i~v 312 (368)
T 1mda_H 238 IPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNT-DGIMILTVEHSRSCLAAAENTSSVTASVGQTS----GPISN 312 (368)
T ss_dssp CCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTT-TEEEEEEEECSSCTTSCEEEEEEEESSSCCEE----ECCEE
T ss_pred CCCCcceEEEEEEeccccccccccccCcceeeEEcCCC-CEEEEEeccccCcccccCCCEEEEECCCCeEE----EEEEC
Confidence 864321 11111110000000 11111226899998 45554332 235669999998763 33332
Q ss_pred cCCCCccceeeccccceeEEEEecCCCE-EEEEe--CCeEEEEEccCCCCceeeeeecccc
Q 010256 328 QEAPGTRSFFTEIIASISDIKFARNGRH-ILSRD--YMTLKLWDINMDSGPVATFQVHEHL 385 (514)
Q Consensus 328 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~-l~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~ 385 (514)
. .....++|+|||+. +++.. ++.|.++|+.+ .+.+.++......
T Consensus 313 g-------------~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t-~kvv~~I~vg~~P 359 (368)
T 1mda_H 313 G-------------HDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS-DQDQSSVELDKGP 359 (368)
T ss_dssp E-------------EEECEEEECCSSSCEEEEEETTTTEEEEEESSS-CEEEEECCCCSCC
T ss_pred C-------------CCcceEEECCCCCEEEEEccCCCCeEEEEECCC-CcEEEEEECCCCC
Confidence 2 24788999999984 55554 59999999998 8888888765543
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.95 E-value=1.1e-06 Score=81.81 Aligned_cols=309 Identities=11% Similarity=0.111 Sum_probs=157.6
Q ss_pred CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccccee-EEEEeeCC
Q 010256 46 SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKIN-KIRWCQSA 124 (514)
Q Consensus 46 ~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~-~i~~~~~~ 124 (514)
++..|++++.++.|..+|..+++.. ....+..... . .. .....+. .+..
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~---------------------W~~~~~~~~~---~-~~-~~~~~~~~~~~~---- 101 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEI---------------------WSVSLAEKDG---W-FS-KEPALLSGGVTV---- 101 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEE---------------------EEEECCC------C-CS-CCCCCEEEEEEE----
T ss_pred ECCEEEEEcCCCeEEEEEccCCcee---------------------eeecCccccc---c-cc-ccCcccccCceE----
Confidence 3567888888999999999887742 1111110000 0 00 0001122 2222
Q ss_pred CCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCC
Q 010256 125 NSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGV 204 (514)
Q Consensus 125 ~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 204 (514)
++..+++++.++.|..+|..+++........... . ......++ .+ +.++.+
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~---------~-------~~p~~~~~-~v------------~v~~~~ 152 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEA---------L-------SRPVVSDG-LV------------LIHTSN 152 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCC---------C-------SCCEEETT-EE------------EEECTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCce---------E-------cCCEEECC-EE------------EEEcCC
Confidence 2347888899999999999999876655443211 0 00011122 22 555667
Q ss_pred CcEEeceeeccccccccccccccccccCccCe------EEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCc
Q 010256 205 SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHI------NSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPAN 277 (514)
Q Consensus 205 ~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v------~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 277 (514)
+.+..+| ..+.+. +..+ .. ...+ ...... +..++.+ .++.+..+|.++++.........+..
T Consensus 153 g~l~~~d-~~tG~~------~W~~-~~-~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~ 221 (376)
T 3q7m_A 153 GQLQALN-EADGAV------KWTV-NL-DMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATG 221 (376)
T ss_dssp SEEEEEE-TTTCCE------EEEE-EC-CC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC---
T ss_pred CeEEEEE-CCCCcE------EEEE-eC-CCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCC
Confidence 7777776 222111 1111 00 0000 111111 3456667 89999999998776654331110000
Q ss_pred c---cccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCC
Q 010256 278 M---EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR 354 (514)
Q Consensus 278 ~---~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 354 (514)
. ............. + ..++.++.++.+..+|.++++..+. ... .....+... +.
T Consensus 222 ~~~~~~~~~~~~~p~~~-~--~~v~~~~~~g~l~~~d~~tG~~~w~----~~~--------------~~~~~~~~~--~~ 278 (376)
T 3q7m_A 222 STEIDRLSDVDTTPVVV-N--GVVFALAYNGNLTALDLRSGQIMWK----REL--------------GSVNDFIVD--GN 278 (376)
T ss_dssp --------CCCCCCEEE-T--TEEEEECTTSCEEEEETTTCCEEEE----ECC--------------CCEEEEEEE--TT
T ss_pred CcccccccccCCCcEEE-C--CEEEEEecCcEEEEEECCCCcEEee----ccC--------------CCCCCceEE--CC
Confidence 0 0000000011111 2 4677788899999999999876432 110 123333333 44
Q ss_pred EEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCcee
Q 010256 355 HILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 355 ~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
.++.++ ++.|..+|..+ ++.+.......... ...... .+..|+.++.+|.|+.+|..+++.+
T Consensus 279 ~l~~~~~~g~l~~~d~~t-G~~~w~~~~~~~~~--------------~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~ 341 (376)
T 3q7m_A 279 RIYLVDQNDRVMALTIDG-GVTLWTQSDLLHRL--------------LTSPVL--YNGNLVVGDSEGYLHWINVEDGRFV 341 (376)
T ss_dssp EEEEEETTCCEEEEETTT-CCEEEEECTTTTSC--------------CCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred EEEEEcCCCeEEEEECCC-CcEEEeecccCCCc--------------ccCCEE--ECCEEEEEeCCCeEEEEECCCCcEE
Confidence 555554 58999999987 76655443111100 002222 2567888889999999999988543
Q ss_pred eeeecCCCccee-EEEECCCCCceeecCCCCeEEE
Q 010256 434 STTLEASKNPMR-RQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 434 ~~~~~~~~~~v~-~~~~~~~~~~l~s~s~d~~v~i 467 (514)
...+.....+. .... .+..|..++.+|.+..
T Consensus 342 -~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~ 373 (376)
T 3q7m_A 342 -AQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYS 373 (376)
T ss_dssp -EEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEE
T ss_pred -EEEecCCCcceeCCEE--ECCEEEEEeCCCEEEE
Confidence 33333222221 1122 2345666666776654
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=4.5e-05 Score=78.52 Aligned_cols=388 Identities=10% Similarity=0.042 Sum_probs=209.8
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccc
Q 010256 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (514)
...|.++...++|.+.+....+| |.+|+..+++.. .+. +.+. ....+ ....
T Consensus 214 ~~~i~~i~~d~~g~lwigt~~~G-l~~~~~~~~~~~------------------------~~~-~~~~--~~~~l-~~~~ 264 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWVATEGAG-LFLINPKTKEIK------------------------NYL-HSPS--NPKSI-SSNY 264 (795)
T ss_dssp CCCEEEEEEEETTEEEEEEBSSC-EEEEETTTTEEE------------------------EEC-CCTT--CTTSC-SCSB
T ss_pred CCeeEEEEEcCCCCEEEEECCCC-eEEEeCCCCeEE------------------------Eee-cCCC--Ccccc-CCCe
Confidence 46788998888886555433344 888987654421 010 0000 00000 0155
Q ss_pred eeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCC
Q 010256 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (514)
Q Consensus 115 v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (514)
|.++.. ..+|. |..|+.+ -|.+|+..+++.......... ...+....|. ++...++|..
T Consensus 265 i~~i~~--d~~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~-~~~l~~~~i~-------~i~~D~~g~l--------- 323 (795)
T 4a2l_A 265 IRSLAM--DSQNR-LWIGTFN-DLNIYHEGTDSFASYSSNPVE-NGSLSQRSVR-------SIFMDSQGGM--------- 323 (795)
T ss_dssp EEEEEE--CTTSC-EEEEESS-CEEEEETTTTEEEEECCCTTS-TTSCSSSCEE-------EEEECTTSCE---------
T ss_pred EEEEEE--cCCCC-EEEEeCC-hhheEcCCCCeEEEEecCCCC-CCCCCCCcEE-------EEEEeCCcCE---------
Confidence 888887 55664 4455555 588999888876544322111 1112223343 5566666664
Q ss_pred CCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccC
Q 010256 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVK 274 (514)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~ 274 (514)
..|+.++-|..++ ......... ........-....|.++...++|.+.+...++-|..|+..+.... .. ...
T Consensus 324 ----Wigt~~~Gl~~~~-~~~~~~~~~-~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~-~~-~~~ 395 (795)
T 4a2l_A 324 ----WLGTYFGGLNYYH-PIRNRFKNI-RNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFT-SY-TLQ 395 (795)
T ss_dssp ----EEEESSSCEEEEC-GGGGSSEEE-CCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEE-EE-CCC
T ss_pred ----EEEECCCCeEEeC-CCcccceEE-cCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEE-EE-ecC
Confidence 4455556666655 111110000 000000011245699999999998776557777899998744321 11 000
Q ss_pred CCcc--cccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecC
Q 010256 275 PANM--EDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARN 352 (514)
Q Consensus 275 ~~~~--~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 352 (514)
+... .-....|.++...+++ ++|..|+.++-|.+||..+++.. .+.... + ......|.++...++
T Consensus 396 ~~~~~~~l~~~~v~~i~~d~~g-~~lWigt~~~Gl~~~d~~~~~~~-----~~~~~~-~------~l~~~~v~~i~~d~~ 462 (795)
T 4a2l_A 396 EDESARGIGSNNIKAVYVDEKK-SLVYIGTHAGGLSILHRNSGQVE-----NFNQRN-S------QLVNENVYAILPDGE 462 (795)
T ss_dssp ------CCSCSCEEEEEEETTT-TEEEEEETTTEEEEEETTTCCEE-----EECTTT-S------CCSCSCEEEEEECSS
T ss_pred CCCcccCCCCccEEEEEEcCCC-CEEEEEeCcCceeEEeCCCCcEE-----EeecCC-C------CcCCCeeEEEEECCC
Confidence 0000 0124578999998888 64666888788999998876531 121100 0 011246899999988
Q ss_pred CCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCce
Q 010256 353 GRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (514)
Q Consensus 353 g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 432 (514)
|.+.++.. +.+.+||..+ ++ ...+...... .. ... ..|.++...++|++.+... +.|..||..++..
T Consensus 463 g~lwigt~-~Gl~~~~~~~-~~-~~~~~~~~~~-~~----~~~---~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~ 529 (795)
T 4a2l_A 463 GNLWLGTL-SALVRFNPEQ-RS-FTTIEKEKDG-TP----VVS---KQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI 529 (795)
T ss_dssp SCEEEEES-SCEEEEETTT-TE-EEECCBCTTC-CB----CCC---CCEEEEEECTTCCEEEEES--SCEEEEEEETTEE
T ss_pred CCEEEEec-CceeEEeCCC-Ce-EEEccccccc-cc----cCC---ceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE
Confidence 88777655 5688898764 32 2222111000 00 000 1244788888898766443 5688899876533
Q ss_pred eeeeec-------CCCcceeEEEECCCCCceeecCCCCeEEEe-eCCCCCccccCCcccccccceEEEEEcCCCCEEEEE
Q 010256 433 ESTTLE-------ASKNPMRRQVQTPSRPSRPLGSLSGVVRRV-KGADNSALDANGNAFDFSMKLLHLAWHPSENSIACA 504 (514)
Q Consensus 433 ~~~~~~-------~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~-~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~ 504 (514)
.+. .....|.++...+++.+.+.... |-.++- ....... +....--....|.++...++|++.+ +
T Consensus 530 ---~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~~~~~--~~~~~gl~~~~i~~i~~d~~g~lWi-~ 602 (795)
T 4a2l_A 530 ---QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEKDKQIKR--YNTTNGLPNNVVYGILEDSFGRLWL-S 602 (795)
T ss_dssp ---EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETTTTEEEE--ECGGGTCSCSCEEEEEECTTSCEEE-E
T ss_pred ---EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCCCCcEEE--eCCCCCCchhheEEEEECCCCCEEE-E
Confidence 111 23356888888888886655543 655551 1111110 0000000134688899988887544 4
Q ss_pred ecCcEEEEe
Q 010256 505 ASNSLYMYY 513 (514)
Q Consensus 505 ~~~~~~i~~ 513 (514)
+.+++..|.
T Consensus 603 t~~Gl~~~~ 611 (795)
T 4a2l_A 603 TNRGISCFN 611 (795)
T ss_dssp ETTEEEEEE
T ss_pred cCCceEEEc
Confidence 467887764
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.87 E-value=1e-05 Score=71.13 Aligned_cols=176 Identities=10% Similarity=0.025 Sum_probs=102.0
Q ss_pred CeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEec--CCeEEEE
Q 010256 235 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS--KGSIRLI 310 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~--dg~i~~w 310 (514)
....+++++++..|..+ ..+.|.+++++... ...+. .........++++|+++.++++... .+.|..+
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~~~-------~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~ 151 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVLF-------DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETS 151 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEE-------CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEE
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EEEEE-------ECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEE
Confidence 45789999976555554 67899999987332 21111 1112457899999975344444433 4688888
Q ss_pred EcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC--CeEEEEEccCCCCceeeeeeccccccc
Q 010256 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPK 388 (514)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~ 388 (514)
++..... ..+.. ........++++|++..|+.++. +.|.++|... ......+.....
T Consensus 152 ~~dg~~~-----~~~~~-----------~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g-~~~~~~~~~~~~---- 210 (267)
T 1npe_A 152 HMDGTNR-----RILAQ-----------DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ-PGRRKVLEGLQY---- 210 (267)
T ss_dssp ETTSCCC-----EEEEC-----------TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE-EEEEEEEECCCS----
T ss_pred ecCCCCc-----EEEEE-----------CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC-CceEEEecCCCC----
Confidence 8754321 11110 01135788999998887776543 8999999874 222222111100
Q ss_pred cccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCC-cceeEEEECCCC
Q 010256 389 LCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASK-NPMRRQVQTPSR 453 (514)
Q Consensus 389 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~ 453 (514)
-..++.. ++.++++....+.|..+|..+++.. .++.... .....+++.|++
T Consensus 211 ------------P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~-~~i~~g~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 211 ------------PFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEM-DTFHPHKQTRLYGITIALSQ 262 (267)
T ss_dssp ------------EEEEEEE-TTEEEEEETTTTEEEEEETTTTEEE-EEECCSSCCCCCCEEEECSC
T ss_pred ------------ceEEEEe-CCEEEEEECCCCeEEEEeCCCCCce-EEEccccccccceeeecCcc
Confidence 1155554 3444444446689999999887443 4444332 245677777763
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.9e-09 Score=98.68 Aligned_cols=144 Identities=8% Similarity=0.024 Sum_probs=70.2
Q ss_pred CCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccc
Q 010256 243 SDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH 321 (514)
Q Consensus 243 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 321 (514)
.++..++++ .|+.|+.||.++++..... ........ ...++ +. .+ ..+++++.++.++.||.++|+..+.
T Consensus 47 ~~g~~~v~~s~dg~l~a~d~~tG~~~w~~-~~~~~~~~-~~sp~----~~-~~-~~v~~g~~dg~v~a~D~~tG~~~w~- 117 (369)
T 2hz6_A 47 VEEPAFLPDPNDGSLYTLGSKNNEGLTKL-PFTIPELV-QASPC----RS-SD-GILYMGKKQDIWYVIDLLTGEKQQT- 117 (369)
T ss_dssp ---CCEEECTTTCCEEEC-----CCSEEC-SCCHHHHH-TTCSC----C-------CCCCEEEEEEEEECCC--------
T ss_pred cCCCEEEEeCCCCEEEEEECCCCceeeee-eccCcccc-ccCce----Ee-cC-CEEEEEeCCCEEEEEECCCCcEEEE-
Confidence 446666776 8999999999876654321 00000000 01111 11 23 4677888899999999999987432
Q ss_pred ccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccc
Q 010256 322 SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFD 400 (514)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (514)
+..+ . ...++|++..+++++ ++.|+.||.++ ++.+..+......
T Consensus 118 ---~~~~-------------~---~~~~~p~~~~v~~~~~dg~v~a~d~~t-G~~~W~~~~~~~~--------------- 162 (369)
T 2hz6_A 118 ---LSSA-------------F---ADSLSPSTSLLYLGRTEYTITMYDTKT-RELRWNATYFDYA--------------- 162 (369)
T ss_dssp ----------------------------------EEEEEEEEEEECCCSSS-SSCCCEEEEEEEC---------------
T ss_pred ---ecCC-------------C---cccccccCCEEEEEecCCEEEEEECCC-CCEEEeEeccccc---------------
Confidence 1111 0 134556777777765 49999999987 7766655433211
Q ss_pred eeeEEEcCCC---CEEEEEeCCCcEEEEecCCCce
Q 010256 401 KFECCLSGDG---GRVATGSYSNLFRVFGCSEGSA 432 (514)
Q Consensus 401 v~~~~~s~~~---~~l~s~~~dg~i~iwd~~~~~~ 432 (514)
..+++++. ..+++++.||.|+.||..+++.
T Consensus 163 --~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 163 --ASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp --CBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred --CccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence 23333332 4566788999999999998854
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.84 E-value=7.5e-08 Score=87.95 Aligned_cols=183 Identities=10% Similarity=0.130 Sum_probs=113.0
Q ss_pred cCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcC
Q 010256 234 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~ 313 (514)
..+.++...+++.+++...++.|..+|.. ++..... ......+.++...+++ .++ .++ +.+..+| .
T Consensus 137 ~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~--------~~~~~~~~~~~~d~~g-~l~-v~t--~~l~~~d-~ 202 (330)
T 3hxj_A 137 AIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRF--------KTNDAITSAASIGKDG-TIY-FGS--DKVYAIN-P 202 (330)
T ss_dssp CCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEE--------ECSSCCCSCCEECTTC-CEE-EES--SSEEEEC-T
T ss_pred ceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEE--------ecCCCceeeeEEcCCC-EEE-EEe--CEEEEEC-C
Confidence 34556677778876665578999999987 5443322 1123445666777777 544 455 8888999 5
Q ss_pred CCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeecccccccccccc
Q 010256 314 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLY 393 (514)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (514)
+++.... +.. ....+.++...++|.+.++..++.|..+|.. ++.+..+........
T Consensus 203 ~g~~~~~----~~~------------~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~--g~~~~~~~~~~~~~~------ 258 (330)
T 3hxj_A 203 DGTEKWN----FYA------------GYWTVTRPAISEDGTIYVTSLDGHLYAINPD--GTEKWRFKTGKRIES------ 258 (330)
T ss_dssp TSCEEEE----ECC------------SSCCCSCCEECTTSCEEEEETTTEEEEECTT--SCEEEEEECSSCCCS------
T ss_pred CCcEEEE----Ecc------------CCcceeceEECCCCeEEEEcCCCeEEEECCC--CCEeEEeeCCCCccc------
Confidence 6554211 111 1135777888888877766666788888743 555554443322111
Q ss_pred ccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 394 ENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 394 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.+.+.++++ |..++.+|.|..+|. +++. ...+......+.++...+++++ ..++.+|.+++
T Consensus 259 ---------~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~-~~~~~~~~~~~~~~~~d~~g~l-~~gt~~G~~~~ 319 (330)
T 3hxj_A 259 ---------SPVIGNTDT-IYFGSYDGHLYAINP-DGTE-KWNFETGSWIIATPVIDENGTI-YFGTRNGKFYA 319 (330)
T ss_dssp ---------CCEECTTSC-EEEECTTCEEEEECT-TSCE-EEEEECSSCCCSCCEECTTCCE-EEECTTSCEEE
T ss_pred ---------cceEcCCCe-EEEecCCCCEEEECC-CCcE-EEEEEcCCccccceEEcCCCEE-EEEcCCCeEEE
Confidence 455555665 556778889999996 4433 3344444455667777777764 45778888888
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.84 E-value=9.6e-07 Score=88.70 Aligned_cols=335 Identities=10% Similarity=0.035 Sum_probs=171.7
Q ss_pred cEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCc
Q 010256 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS 206 (514)
Q Consensus 127 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 206 (514)
..+++++.++.|..+|..+|+..-............ ..+.......+. ..+..+ +.++.++.
T Consensus 71 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~----~~~~~~~~~~~~--~~~g~v------------~v~~~dg~ 132 (689)
T 1yiq_A 71 GVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAG----EACCDAVNRGVA--VWKGKV------------YVGVLDGR 132 (689)
T ss_dssp TEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGG----GCTTCSCCCCCE--EETTEE------------EEECTTSE
T ss_pred CEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccc----cccccCCCCccE--EECCEE------------EEEccCCE
Confidence 467778888999999999998777665442211000 000000000111 122333 66667788
Q ss_pred EEeceeecccccccccccccccccc-CccCeEEEEECC---CCCEEEEec------CCeEEEEeccCCCceeeeecc--C
Q 010256 207 LRLPVVVTSQETNLVAGCRRIYAHA-HDYHINSISNNS---DGETFISAD------DLRINLWNLEISNQSFNIVDV--K 274 (514)
Q Consensus 207 i~i~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~---~~~~l~s~~------d~~i~iwd~~~~~~~~~~~~~--~ 274 (514)
+..+| ..+.+. +..+... +......+..+| ++..++... ++.|+.||.++++...+.... .
T Consensus 133 l~AlD-a~TG~~------~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~ 205 (689)
T 1yiq_A 133 LEAID-AKTGQR------AWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGD 205 (689)
T ss_dssp EEEEE-TTTCCE------EEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCC
T ss_pred EEEEE-CCCCCE------eeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCC
Confidence 88777 222111 1111010 100001111112 444444322 689999999988876554211 0
Q ss_pred CC-c------------cc--------ccCCceEEEEEecCCCcEEEEEecCCe-------------------EEEEEcCC
Q 010256 275 PA-N------------ME--------DLTEVITSAEFHPTHCNMLAYSSSKGS-------------------IRLIDMRQ 314 (514)
Q Consensus 275 ~~-~------------~~--------~~~~~i~~v~~~p~~~~~l~~~~~dg~-------------------i~~wd~~~ 314 (514)
+. . .. +.......++++|+. .+++.++.++. |..+|.++
T Consensus 206 p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~T 284 (689)
T 1yiq_A 206 PKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADT 284 (689)
T ss_dssp TTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTT
T ss_pred cccccccccccccccccCCceeeecCCCCccccceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccC
Confidence 00 0 00 111112367889987 78888887764 99999999
Q ss_pred CccccccccceeccCCCCccceeeccccceeEEEEecCCC---EEEEEeC-CeEEEEEccCCCCceeeeeecccc-cccc
Q 010256 315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR---HILSRDY-MTLKLWDINMDSGPVATFQVHEHL-RPKL 389 (514)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~---~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~-~~~~ 389 (514)
++..+..... .+... -+. ....+.-.....+|+ .++.++. |.++++|..+ ++++......... ...+
T Consensus 285 G~~~W~~~~~--~~d~w----d~~-~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~l~~~~~~~~~w~~~~ 356 (689)
T 1yiq_A 285 GEYVWHYQTT--PGDAW----DYT-ATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRAT-GELLSAKGIVPQSWTKGM 356 (689)
T ss_dssp CCEEEEEESS--TTCCS----CCC-CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTT-CCEEEEEESSCCSSEEEE
T ss_pred CceeEeeecC--Ccccc----ccc-CCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCC-CCEecccccccccccccc
Confidence 9875432110 00000 000 001222223333565 6667665 9999999997 8776443322100 0000
Q ss_pred c----------c-c--cccCC----------ccceeeEEEcCCCCEEEEEeC----------------------------
Q 010256 390 C----------D-L--YENDS----------IFDKFECCLSGDGGRVATGSY---------------------------- 418 (514)
Q Consensus 390 ~----------~-~--~~~~~----------~~~v~~~~~s~~~~~l~s~~~---------------------------- 418 (514)
. . . +.... ...-..++|+|+..++++...
T Consensus 357 ~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 436 (689)
T 1yiq_A 357 DMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRT 436 (689)
T ss_dssp ETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEE
T ss_pred CccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccc
Confidence 0 0 0 00000 000114789999888776532
Q ss_pred -----------------CCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEee---CCCCCcccc
Q 010256 419 -----------------SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVK---GADNSALDA 478 (514)
Q Consensus 419 -----------------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~---~~~~~~~~~ 478 (514)
+|.|+.||+.+++. .-.++.+. ++..-.+...+.+++.++.|+.++.++ |..+++..+
T Consensus 437 ~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~-~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 437 GMMPEGAEGLLEMAKSWSGKLIAWDPVKQQA-AWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA 514 (689)
T ss_dssp CCCCSSHHHHHHHHTTCEEEEEEEETTTTEE-EEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cccCcccccCCCCCCCcceeEEEEECCCCCe-EeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence 37799999999843 34444333 233335556778899999999999943 444432222
Q ss_pred CCcccccccceEEEEEcCCCCEEE
Q 010256 479 NGNAFDFSMKLLHLAWHPSENSIA 502 (514)
Q Consensus 479 ~~~~~~~~~~v~~~~~spd~~~l~ 502 (514)
. ....-.-+.|..||+..+
T Consensus 515 ~-----~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 515 A-----SGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp S-----SCCCSCCEEEEETTEEEE
T ss_pred C-----CCcccCceEEEECCEEEE
Confidence 1 122224467788988554
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.75 E-value=1.4e-06 Score=87.27 Aligned_cols=78 Identities=9% Similarity=0.021 Sum_probs=52.8
Q ss_pred CeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeecc
Q 010256 305 GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHE 383 (514)
Q Consensus 305 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~ 383 (514)
|.|..||+.+++..++. +. ..++....+...+..++.++ ++.+++||.++ ++.+..+....
T Consensus 457 g~l~A~D~~tG~~~W~~----~~-------------~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~t-G~~lw~~~~~~ 518 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSV----EH-------------VSPWNGGTLTTAGNVVFQGTADGRLVAYHAAT-GEKLWEAPTGT 518 (677)
T ss_dssp EEEEEEETTTTEEEEEE----EE-------------SSSCCCCEEEETTTEEEEECTTSEEEEEETTT-CCEEEEEECSS
T ss_pred cEEEEEeCCCCcEEeec----CC-------------CCCCcCcceEeCCCEEEEECCCCcEEEEECCC-CceeeeeeCCC
Confidence 77999999998865431 11 12344455667777888775 49999999998 99988887654
Q ss_pred ccccccccccccCCccceeeEEEcCCCCEEE
Q 010256 384 HLRPKLCDLYENDSIFDKFECCLSGDGGRVA 414 (514)
Q Consensus 384 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 414 (514)
.... .-+.|..+|+.++
T Consensus 519 ~~~~--------------~p~~y~~~G~~~v 535 (677)
T 1kb0_A 519 GVVA--------------APSTYMVDGRQYV 535 (677)
T ss_dssp CCCS--------------CCEEEEETTEEEE
T ss_pred Cccc--------------CCEEEEeCCEEEE
Confidence 3221 1466778887544
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.71 E-value=0.00016 Score=74.38 Aligned_cols=393 Identities=10% Similarity=0.001 Sum_probs=201.1
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccc
Q 010256 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (514)
...|.++...++|.+. .|+..+-|.+++..+.+... +.. +.+..+..... . ..+ ....
T Consensus 257 ~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~-----~~~--------~~f~~~~~~~~-~------~~l-~~~~ 314 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKLW-IATELNGIMILDLQQNQFLL-----PEQ--------IRFEFIREGDN-N------YSL-SNAS 314 (781)
T ss_dssp CCCEEEEEECTTSEEE-EEESSSCEEEEETTCC----------------------CEEECBCSS-T------TSB-SSSC
T ss_pred CceEEEEEECCCCCEE-EEeCCCCeEEECCCCCeeee-----eec--------cccccccCCCC-C------CCC-CCCe
Confidence 3579999998888654 45553458888876554210 000 00000000000 0 000 0156
Q ss_pred eeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccC-CCccccCCcceecccccCCceeeccCCCccccccCCC
Q 010256 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNV-HPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (514)
Q Consensus 115 v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (514)
|.++.. ..+| .|-.|+.++-|..++...+.......... .....+....|. ++...++|..
T Consensus 315 v~~i~~--D~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~-------~i~~d~~g~l-------- 376 (781)
T 3v9f_A 315 ARYIFQ--DSFN-NIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVS-------SVCDDGQGKL-------- 376 (781)
T ss_dssp EEEEEE--CSSC-CEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEE-------EEEECTTSCE--------
T ss_pred EEEEEE--eCCC-CEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceE-------EEEEcCCCCE--------
Confidence 888877 5555 46677777888889887665433221100 001111122333 4455555554
Q ss_pred CCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeecc
Q 010256 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDV 273 (514)
Q Consensus 194 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~ 273 (514)
..|+.++-|..++ ......... ... .......|.++...+++.+.+...++-|..++..+++.. .. .
T Consensus 377 -----Wigt~~~Gl~~~~-~~~~~~~~~---~~~-~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~-~~-~- 443 (781)
T 3v9f_A 377 -----WIGTDGGGINVFE-NGKRVAIYN---KEN-RELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQ-II-E- 443 (781)
T ss_dssp -----EEEEBSSCEEEEE-TTEEEEECC---------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEE-EC-C-
T ss_pred -----EEEeCCCcEEEEE-CCCCeEEEc---cCC-CCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEE-Ee-c-
Confidence 4455455566665 211100000 000 012346789999988888777556677888988644321 11 0
Q ss_pred CCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCC
Q 010256 274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (514)
Q Consensus 274 ~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 353 (514)
.. ......|.++...+++ . |..|+. +.+..||..+++.. .+...... ......|.++...++|
T Consensus 444 -~~--~~~~~~v~~i~~d~~g-~-lwigt~-~Gl~~~~~~~~~~~-----~~~~~~~~------~~~~~~i~~i~~d~~g 506 (781)
T 3v9f_A 444 -LE--KNELLDVRVFYEDKNK-K-IWIGTH-AGVFVIDLASKKVI-----HHYDTSNS------QLLENFVRSIAQDSEG 506 (781)
T ss_dssp -ST--TTCCCCEEEEEECTTS-E-EEEEET-TEEEEEESSSSSCC-----EEECTTTS------SCSCSCEEEEEECTTC
T ss_pred -cC--CCCCCeEEEEEECCCC-C-EEEEEC-CceEEEeCCCCeEE-----ecccCccc------ccccceeEEEEEcCCC
Confidence 00 1134678999888887 4 444555 56888998775431 11111000 0012568999999999
Q ss_pred CEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCcee
Q 010256 354 RHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 354 ~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
.+.++...+-|..||... .....+...... ... .|.++...++|++.++. .+|.+..||..+++..
T Consensus 507 ~lWigt~~~Gl~~~~~~~--~~~~~~~~~~~l--------~~~---~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~~~ 572 (781)
T 3v9f_A 507 RFWIGTFGGGVGIYTPDM--QLVRKFNQYEGF--------CSN---TINQIYRSSKGQMWLAT-GEGLVCFPSARNFDYQ 572 (781)
T ss_dssp CEEEEESSSCEEEECTTC--CEEEEECTTTTC--------SCS---CEEEEEECTTSCEEEEE-TTEEEEESCTTTCCCE
T ss_pred CEEEEEcCCCEEEEeCCC--CeEEEccCCCCC--------CCC---eeEEEEECCCCCEEEEE-CCCceEEECCCCCcEE
Confidence 887776544577788763 233333221111 011 24478888888866544 4665588888765322
Q ss_pred eeee-cC-CCcceeEEEECCCCCceeecCCCCeEEEee-CCCCCccccCCcccccccceEEEEEcCCCCEEEEEecCcEE
Q 010256 434 STTL-EA-SKNPMRRQVQTPSRPSRPLGSLSGVVRRVK-GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLY 510 (514)
Q Consensus 434 ~~~~-~~-~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~-~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~ 510 (514)
.... .+ ....+.++...++|.+.+++ .+|..++-. ...........-.....-...++...++|+ |..|+.+++.
T Consensus 573 ~~~~~~gl~~~~i~~i~~d~~g~lW~~t-~~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~-l~~g~~~Gl~ 650 (781)
T 3v9f_A 573 VFQRKEGLPNTHIRAISEDKNGNIWAST-NTGISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGL-IYFGSINGLC 650 (781)
T ss_dssp EECGGGTCSCCCCCEEEECSSSCEEEEC-SSCEEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSC-EEEEETTEEE
T ss_pred EccccCCCCCceEEEEEECCCCCEEEEc-CCceEEEECCCCceEEecccCCccccccccCceEECCCCE-EEEECCCceE
Confidence 1111 11 12357788888888766654 567666611 111100000000000111234667778887 5556667777
Q ss_pred EEe
Q 010256 511 MYY 513 (514)
Q Consensus 511 i~~ 513 (514)
.|+
T Consensus 651 ~f~ 653 (781)
T 3v9f_A 651 FFN 653 (781)
T ss_dssp EEC
T ss_pred EEC
Confidence 764
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.70 E-value=0.00027 Score=72.62 Aligned_cols=396 Identities=10% Similarity=0.002 Sum_probs=199.9
Q ss_pred cceEEEEEcC--CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccc
Q 010256 36 DIISAIEFDK--SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (514)
Q Consensus 36 ~~V~~~~~s~--~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (514)
..|.++.... +|.+. .++.++-|..|+..+++.. .+..... ..+. ..
T Consensus 115 ~~i~~i~~d~~~~g~lw-i~t~~~gl~~~~~~~~~~~------------------------~~~~~~~-----~~l~-~~ 163 (781)
T 3v9f_A 115 NDVTHITSSVQAGKGLW-VCTYYRGIEYLDIATGKFT------------------------HYNKSTV-----PALP-SE 163 (781)
T ss_dssp SCEEEEEECSSTTSEEE-EEESSSCEEEEETTTTEEE------------------------EESTTTC-----TTCS-CC
T ss_pred CcceEEEecCccCCCEE-EEECCCCeeEEECCCCeEE------------------------eeccCcc-----cCCC-cc
Confidence 4688998887 77544 4553445888887654421 0100000 0000 14
Q ss_pred ceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCC
Q 010256 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (514)
Q Consensus 114 ~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (514)
.|.++.. ..++ .|..++.++-+..||..+++..........+ ..+....+. .+...++|...
T Consensus 164 ~i~~i~~--d~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~-~~l~~~~i~-------~i~~d~~g~lw------- 225 (781)
T 3v9f_A 164 QTWTATE--AEDG-KLYIGHVEGGLSILSLNDKSVKHFVHDPQNP-NSLPGNDVR-------CIYKDTNGNIW------- 225 (781)
T ss_dssp CEEEEEE--EETT-EEEEEETTTEEEEEETTTTEEEEECC---------CCSSEE-------EEEECTTCCEE-------
T ss_pred ceEEEEE--CCCC-CEEEEecCCCeEEEcCCCCceEeeecCCCCc-ccCCCCcee-------EEEEcCCCCEE-------
Confidence 4777766 3344 4556776667889998887654432111000 011112232 44455555543
Q ss_pred CCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeec-
Q 010256 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVD- 272 (514)
Q Consensus 194 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~- 272 (514)
.++.. -+.+|+ .......................|.++...++|.+.+....+-|.++|..+.... ....
T Consensus 226 ------igt~~-Gl~~~d-~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~ 296 (781)
T 3v9f_A 226 ------IGTSK-GLALFN-ANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFL-LPEQI 296 (781)
T ss_dssp ------EEETT-EEEEEE-TTTTEEEC-----------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------
T ss_pred ------EEeCC-cHheEC-CCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCeee-eeecc
Confidence 33333 466565 1111100000000000011235689999988887666555456888888744321 1100
Q ss_pred ------cCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeE
Q 010256 273 ------VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (514)
Q Consensus 273 ------~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 346 (514)
.......-....|.++...++| . |-.|+.++-|..++..+... ..+.......... .-....|.+
T Consensus 297 ~f~~~~~~~~~~~l~~~~v~~i~~D~~g-~-lWigt~~~Gl~~~~~~~~~~-----~~~~~~~~~~~~~--~l~~~~v~~ 367 (781)
T 3v9f_A 297 RFEFIREGDNNYSLSNASARYIFQDSFN-N-IWIGTWGGGINFISNAPPTF-----HTWSYSPTQMNES--SLSNKVVSS 367 (781)
T ss_dssp -CEEECBCSSTTSBSSSCEEEEEECSSC-C-EEEEEBSSCEEEECSSCCSC-----EEEC----CCCSS--CCSSSCEEE
T ss_pred ccccccCCCCCCCCCCCeEEEEEEeCCC-C-EEEEecCCeEEEeCCCCCcc-----eeeccCccccccC--CCCCcceEE
Confidence 0000011234678999998887 4 55577778888888765442 1111100000000 001246899
Q ss_pred EEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEe
Q 010256 347 IKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (514)
Q Consensus 347 ~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 426 (514)
+...++|.+.+...++-|..||..+ +. ...+...... .-..|.++...++|++.+ |+.++.|..++
T Consensus 368 i~~d~~g~lWigt~~~Gl~~~~~~~-~~-~~~~~~~~~~-----------~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~ 433 (781)
T 3v9f_A 368 VCDDGQGKLWIGTDGGGINVFENGK-RV-AIYNKENREL-----------LSNSVLCSLKDSEGNLWF-GTYLGNISYYN 433 (781)
T ss_dssp EEECTTSCEEEEEBSSCEEEEETTE-EE-EECC-----C-----------CCSBEEEEEECTTSCEEE-EETTEEEEEEC
T ss_pred EEEcCCCCEEEEeCCCcEEEEECCC-Ce-EEEccCCCCC-----------CCcceEEEEECCCCCEEE-EeccCCEEEEc
Confidence 9998888877665456688888764 21 1111100000 001245788887887655 66667799999
Q ss_pred cCCCceeeeee-cCCCcceeEEEECCCCCceeecCCCCeEEE-eeCCCCCccccCCcccccccceEEEEEcCCCCEEEEE
Q 010256 427 CSEGSAESTTL-EASKNPMRRQVQTPSRPSRPLGSLSGVVRR-VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACA 504 (514)
Q Consensus 427 ~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i-~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~ 504 (514)
..+++...... ......|.++...+++.+.+... .|-.++ ..+..................|.++...++|++.+..
T Consensus 434 ~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt 512 (781)
T 3v9f_A 434 TRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT 512 (781)
T ss_dssp SSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE
T ss_pred CCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEE
Confidence 87663221111 12345788888888887665544 554444 1121111100000000114678999999999866655
Q ss_pred ecCcEEEEe
Q 010256 505 ASNSLYMYY 513 (514)
Q Consensus 505 ~~~~~~i~~ 513 (514)
..++++.|.
T Consensus 513 ~~~Gl~~~~ 521 (781)
T 3v9f_A 513 FGGGVGIYT 521 (781)
T ss_dssp SSSCEEEEC
T ss_pred cCCCEEEEe
Confidence 457887764
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.69 E-value=8e-07 Score=84.77 Aligned_cols=191 Identities=8% Similarity=0.055 Sum_probs=106.5
Q ss_pred CCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCC--------------
Q 010256 242 NSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG-------------- 305 (514)
Q Consensus 242 ~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg-------------- 305 (514)
.+||+.|..+ .++.+.+.|.++.+...++. .. .....++++|+| .++++.+.+.
T Consensus 161 ~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~------Vg---g~pd~~~~spdG-k~~~vt~~~se~~~~i~~~~~~~~ 230 (595)
T 1fwx_A 161 VNDGTNMEDVANYVNVFTAVDADKWEVAWQVL------VS---GNLDNCDADYEG-KWAFSTSYNSEKGMTLPEMTAAEM 230 (595)
T ss_dssp SCSSSSTTCGGGEEEEEEEEETTTTEEEEEEE------ES---SCCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCCSE
T ss_pred CCCCcccccccccCceEEEEECCCCeEEEEEE------eC---CCccceEECCCC-CEEEEEecCcccCcchhhcccccc
Confidence 3444444444 46678888887654443321 11 123557788888 6666666542
Q ss_pred -eEEEEEcCCCccc--------cccccceeccCC--CCccceeeccccceeEEEEecCCCEEEEEeC--CeEEEEEccCC
Q 010256 306 -SIRLIDMRQSALC--------DTHSKLFEEQEA--PGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMD 372 (514)
Q Consensus 306 -~i~~wd~~~~~~~--------~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~~ 372 (514)
.|.+.|....... ...+..++.... ......+.. .....++.++|||+++++++. .+|.++|+.+
T Consensus 231 d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~- 308 (595)
T 1fwx_A 231 DHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR- 308 (595)
T ss_dssp EEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG-
T ss_pred ceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcc-
Confidence 3555554322100 001222222210 000011111 124677999999999998653 8999999985
Q ss_pred CC------------ceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC---------c
Q 010256 373 SG------------PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG---------S 431 (514)
Q Consensus 373 ~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---------~ 431 (514)
.+ ....+....+ -..++|+|+|...++.-.|+.|.+||+... .
T Consensus 309 ~~~~~~~~l~~~~~v~~~v~vG~g----------------P~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~ 372 (595)
T 1fwx_A 309 FDAVFYENADPRSAVVAEPELGLG----------------PLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVD 372 (595)
T ss_dssp HHHHHHSCCCGGGGEEECCBCCSC----------------EEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCC
T ss_pred cccccccccCcccceEEEcCCCCC----------------cceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccc
Confidence 21 1111111111 126899999954556678999999998762 1
Q ss_pred eeeeeecCCCcce-----eEEEECCCCCceeecC
Q 010256 432 AESTTLEASKNPM-----RRQVQTPSRPSRPLGS 460 (514)
Q Consensus 432 ~~~~~~~~~~~~v-----~~~~~~~~~~~l~s~s 460 (514)
....++..|..+- .....+|||++|++..
T Consensus 373 ~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~N 406 (595)
T 1fwx_A 373 PIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS 406 (595)
T ss_dssp CEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred eeEEEeecccccccceeccceEeCCCCCEEEEcC
Confidence 3345666665542 2234589999988763
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.7e-06 Score=78.86 Aligned_cols=211 Identities=10% Similarity=0.041 Sum_probs=119.6
Q ss_pred CCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccccc
Q 010256 245 GETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSK 323 (514)
Q Consensus 245 ~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 323 (514)
+..+..+ .++.|..+|.+ ++..... ......+.++...+++ . +..++.++.|..+|.. ++...
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~--------~~~~~~~~~~~~~~~g-~-l~vgt~~~~l~~~d~~-g~~~~---- 170 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRF--------KTKKAIYATPIVSEDG-T-IYVGSNDNYLYAINPD-GTEKW---- 170 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEE--------ECSSCCCSCCEECTTS-C-EEEECTTSEEEEECTT-SCEEE----
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEE--------cCCCceeeeeEEcCCC-E-EEEEcCCCEEEEECCC-CCEeE----
Confidence 3445556 78999999987 5443322 1123335556667676 4 6668888999999988 65422
Q ss_pred ceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceee
Q 010256 324 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFE 403 (514)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 403 (514)
.+... ...+.++.+.+++.+.++. +.|..+| .+ ++.+......... +.+
T Consensus 171 ~~~~~------------~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~-g~~~~~~~~~~~~---------------~~~ 219 (330)
T 3hxj_A 171 RFKTN------------DAITSAASIGKDGTIYFGS--DKVYAIN-PD-GTEKWNFYAGYWT---------------VTR 219 (330)
T ss_dssp EEECS------------SCCCSCCEECTTCCEEEES--SSEEEEC-TT-SCEEEEECCSSCC---------------CSC
T ss_pred EEecC------------CCceeeeEEcCCCEEEEEe--CEEEEEC-CC-CcEEEEEccCCcc---------------eec
Confidence 11111 1346667777788766655 7899999 44 5555444332211 226
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCccc
Q 010256 404 CCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAF 483 (514)
Q Consensus 404 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~ 483 (514)
+...++|.+. .++.++.|..++.. +... ..+......+..+...+++. |..++.++.+..++.... ... ...
T Consensus 220 ~~~~~~g~l~-v~t~~~gl~~~~~~-g~~~-~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~~g~---~~~-~~~ 291 (330)
T 3hxj_A 220 PAISEDGTIY-VTSLDGHLYAINPD-GTEK-WRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINPDGT---EKW-NFE 291 (330)
T ss_dssp CEECTTSCEE-EEETTTEEEEECTT-SCEE-EEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECTTSC---EEE-EEE
T ss_pred eEECCCCeEE-EEcCCCeEEEECCC-CCEe-EEeeCCCCccccceEcCCCe-EEEecCCCCEEEECCCCc---EEE-EEE
Confidence 7788887654 46667888888753 4332 33333333344555655554 555666766666332100 000 000
Q ss_pred ccccceEEEEEcCCCCEEEEEecCcEEE
Q 010256 484 DFSMKLLHLAWHPSENSIACAASNSLYM 511 (514)
Q Consensus 484 ~~~~~v~~~~~spd~~~l~~~~~~~~~i 511 (514)
.....+.++...+++++.+ ++.++++.
T Consensus 292 ~~~~~~~~~~~d~~g~l~~-gt~~G~~~ 318 (330)
T 3hxj_A 292 TGSWIIATPVIDENGTIYF-GTRNGKFY 318 (330)
T ss_dssp CSSCCCSCCEECTTCCEEE-ECTTSCEE
T ss_pred cCCccccceEEcCCCEEEE-EcCCCeEE
Confidence 1234567777778887555 55444443
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=2.7e-05 Score=77.99 Aligned_cols=178 Identities=15% Similarity=0.180 Sum_probs=101.5
Q ss_pred EEEECCCCCEEEEe-cCC-------------------eEEEEeccCCCceeeeeccCCCccc--ccCCceEEEEEecCCC
Q 010256 238 SISNNSDGETFISA-DDL-------------------RINLWNLEISNQSFNIVDVKPANME--DLTEVITSAEFHPTHC 295 (514)
Q Consensus 238 ~~~~~~~~~~l~s~-~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~i~~v~~~p~~~ 295 (514)
.++++|+...+..+ .++ .|..+|.++++...+.. ..+.... ....++....+..++.
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~-~~~~~~wd~~~~~~~~~~d~~~~G~ 312 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQ-VTPGDSWDFTATQQITLAELNIDGK 312 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE-SSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEee-cCCCccccccCCCCcEEEEeccCCc
Confidence 57888888888777 555 49999999887665431 1000000 0112333333444651
Q ss_pred --cEEEEEecCCeEEEEEcCCCcccccccc-------ceeccCC-C----C------ccceeecccc--ceeEEEEecCC
Q 010256 296 --NMLAYSSSKGSIRLIDMRQSALCDTHSK-------LFEEQEA-P----G------TRSFFTEIIA--SISDIKFARNG 353 (514)
Q Consensus 296 --~~l~~~~~dg~i~~wd~~~~~~~~~~~~-------~~~~~~~-~----~------~~~~~~~~~~--~i~~~~~s~~g 353 (514)
..++.++.+|.+.++|..+++.+..... .++.... + . ......+..+ .-..++++|+.
T Consensus 313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~ 392 (668)
T 1kv9_A 313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT 392 (668)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC
Confidence 2688899999999999999987522100 0000000 0 0 0000000000 01236777776
Q ss_pred CEEEEE------------------------------------eC-CeEEEEEccCCCCceeeeeeccccccccccccccC
Q 010256 354 RHILSR------------------------------------DY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYEND 396 (514)
Q Consensus 354 ~~l~~~------------------------------------~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (514)
..++.. .. +.|..||+.+ ++.+-.........
T Consensus 393 g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~t-G~~~W~~~~~~~~~---------- 461 (668)
T 1kv9_A 393 GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVK-QKAAWKVPYPTHWN---------- 461 (668)
T ss_dssp TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTT-TEEEEEEEESSSCC----------
T ss_pred CEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCC-CcEEEEccCCCCCc----------
Confidence 665531 12 6788899887 77665555432211
Q ss_pred CccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCcee
Q 010256 397 SIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 397 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
...+...+.+++.++.||.++.||.++++.+
T Consensus 462 ------~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l 492 (668)
T 1kv9_A 462 ------GGTLSTAGNLVFQGTAAGQMHAYSADKGEAL 492 (668)
T ss_dssp ------CCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ------CceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence 3344557888999999999999999998544
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.1e-05 Score=69.46 Aligned_cols=210 Identities=7% Similarity=-0.011 Sum_probs=128.4
Q ss_pred ccccc--ceEEEEEcCCCCeEEEecC--CCeEEEEEecCCcccCCcccccccccccccCCccceeeeee--ccCCCcccc
Q 010256 32 VQEVD--IISAIEFDKSGDHLATGDR--GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF--QSHEPEFDY 105 (514)
Q Consensus 32 ~~h~~--~V~~~~~s~~g~~l~tg~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~~~~ 105 (514)
++|.. ....++|+||+.++++.+. ++.|.+.|+.+++.. ..+ ..+
T Consensus 15 ~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~-----------------------~~i~l~~~------ 65 (266)
T 2iwa_A 15 FPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVE-----------------------NIHKMDDS------ 65 (266)
T ss_dssp EECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEE-----------------------EEEECCTT------
T ss_pred EECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEE-----------------------EEEecCCC------
Confidence 34543 4689999998755544432 579999999988753 121 111
Q ss_pred ccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCc
Q 010256 106 LKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (514)
Q Consensus 106 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 185 (514)
.-...+++ .. +...++.-.++.+.++|..+.+....+... .+. ....++||+.
T Consensus 66 -------~fgeGi~~--~g-~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~~----------------g~glt~Dg~~ 118 (266)
T 2iwa_A 66 -------YFGEGLTL--LN-EKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MKD----------------GWGLATDGKI 118 (266)
T ss_dssp -------CCEEEEEE--ET-TEEEEEETTCSEEEEEETTTTEEEEEEECC-SSS----------------CCEEEECSSS
T ss_pred -------cceEEEEE--eC-CEEEEEEecCCEEEEEECCCCcEEEEEECC-CCC----------------eEEEEECCCE
Confidence 11223444 22 344455567899999999998877765543 111 4456778887
Q ss_pred cccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccc-cCccCeEEEEECCCCCEEEEe-cCCeEEEEeccC
Q 010256 186 GERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAH-AHDYHINSISNNSDGETFISA-DDLRINLWNLEI 263 (514)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~ 263 (514)
+ +++..++.+.+.| ..+.+. ......-.. ..-..++.+.|. ++..++.. .++.|.+.|..+
T Consensus 119 l------------~vs~gs~~l~viD-~~t~~v---~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~t 181 (266)
T 2iwa_A 119 L------------YGSDGTSILYEID-PHTFKL---IKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKD 181 (266)
T ss_dssp E------------EEECSSSEEEEEC-TTTCCE---EEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTT
T ss_pred E------------EEECCCCeEEEEE-CCCCcE---EEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCC
Confidence 7 5555678888877 222111 111111000 011246778888 77666666 789999999997
Q ss_pred CCceeeeeccCCC------cccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCC
Q 010256 264 SNQSFNIVDVKPA------NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 315 (514)
Q Consensus 264 ~~~~~~~~~~~~~------~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~ 315 (514)
++.. ..+++... .-.........|+|+|++..+++++...+.+...++...
T Consensus 182 g~V~-~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 182 GTLL-GWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp CCEE-EEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred CcEE-EEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 6644 33322100 000112467899999998678888888899998888654
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=2.4e-05 Score=70.85 Aligned_cols=155 Identities=9% Similarity=0.019 Sum_probs=88.3
Q ss_pred eEEEEECC-CCCEEEEe-c-----------------CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCc
Q 010256 236 INSISNNS-DGETFISA-D-----------------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCN 296 (514)
Q Consensus 236 v~~~~~~~-~~~~l~s~-~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~ 296 (514)
...+++.+ +|++.++- . ++.|..||..+++.. .+ .........++++|++ +
T Consensus 128 p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~-~~--------~~~~~~p~gia~~~dg-~ 197 (322)
T 2fp8_A 128 LYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT-LL--------LKELHVPGGAEVSADS-S 197 (322)
T ss_dssp EEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE-EE--------EEEESCCCEEEECTTS-S
T ss_pred cceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE-Ee--------ccCCccCcceEECCCC-C
Confidence 45566777 66665553 2 366778887643321 11 0111234679999998 6
Q ss_pred EE-EEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE-e----------CCeE
Q 010256 297 ML-AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-D----------YMTL 364 (514)
Q Consensus 297 ~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~----------~~~i 364 (514)
.| ++-+..+.|..|++.....- ....+.. ..+ ...+++.++|.+.++. . .+.|
T Consensus 198 ~lyv~d~~~~~I~~~~~~~~~~~--~~~~~~~------------~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v 262 (322)
T 2fp8_A 198 FVLVAEFLSHQIVKYWLEGPKKG--TAEVLVK------------IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKG 262 (322)
T ss_dssp EEEEEEGGGTEEEEEESSSTTTT--CEEEEEE------------CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEE
T ss_pred EEEEEeCCCCeEEEEECCCCcCC--ccceEEe------------CCC-CCCeEECCCCCEEEEecCcccccccCCCccEE
Confidence 44 44456789999998753210 0111110 112 6778999999877764 2 2456
Q ss_pred EEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCC
Q 010256 365 KLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 365 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 429 (514)
..+|.. ++.+..+....+.. ...+..+++ .+++++++....+.|..+++..
T Consensus 263 ~~~d~~--G~~~~~~~~~~g~~-----------~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 263 IKFDEF--GNILEVIPLPPPFA-----------GEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEECTT--SCEEEEEECCTTTT-----------TSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred EEECCC--CCEEEEEECCCCCc-----------cccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 667653 66666665433210 011225665 4666666666778899998864
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.61 E-value=2e-06 Score=82.08 Aligned_cols=261 Identities=9% Similarity=0.027 Sum_probs=145.4
Q ss_pred CCCCeEEEecC-CCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEEEeeC
Q 010256 45 KSGDHLATGDR-GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQS 123 (514)
Q Consensus 45 ~~g~~l~tg~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~ 123 (514)
+||++|..... +++|.+.|+.+.+... ..++.. ......+++..-
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~---------------------ii~ip~-------------g~~phg~~~~~~ 144 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDA---------------------ILEIPN-------------AKGIHGLRPQKW 144 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEE---------------------EEECSS-------------CCSEEEEEECCS
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEee---------------------EEeCCC-------------CCCCcceeeeec
Confidence 38888877664 5679999998776420 001111 133566666312
Q ss_pred CCCcEEEEee------------------CCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCc
Q 010256 124 ANSALYLLST------------------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGC 185 (514)
Q Consensus 124 ~~~~~l~s~~------------------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 185 (514)
++++++++++ .++.+.+.|..+.+..........+. .++.+|+|+.
T Consensus 145 p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd----------------~~~~spdGk~ 208 (595)
T 1fwx_A 145 PRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLD----------------NCDADYEGKW 208 (595)
T ss_dssp SBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCC----------------CEEECSSSSE
T ss_pred CCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCcc----------------ceEECCCCCE
Confidence 6677877774 34689999999988777666543222 6677888877
Q ss_pred cccccCCCCCC-cc--cCCCC-----------------------CCcEEeceeeccccccccccc-cccccccCccCeEE
Q 010256 186 GERNFGCASND-SS--FPPGG-----------------------VSSLRLPVVVTSQETNLVAGC-RRIYAHAHDYHINS 238 (514)
Q Consensus 186 l~~~~~~~~~~-~~--~~~~~-----------------------~~~i~i~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~ 238 (514)
+....-..... .+ .+... -+.+.+.| ..... ... .... .-.....+
T Consensus 209 ~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID-~~~~~----~~~~~~~I--pvg~~PhG 281 (595)
T 1fwx_A 209 AFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVD-GRKEA----SSLFTRYI--PIANNPHG 281 (595)
T ss_dssp EEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEE-CSGGG----CCSSEEEE--EEESSCCC
T ss_pred EEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEe-CcccC----CceeEEEE--ecCCCceE
Confidence 62221111000 00 00000 02244444 11100 000 0010 01124567
Q ss_pred EEECCCCCEEEEe--cCCeEEEEeccCCCceee-eeccCC---CcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEc
Q 010256 239 ISNNSDGETFISA--DDLRINLWNLEISNQSFN-IVDVKP---ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (514)
Q Consensus 239 ~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~-~~~~~~---~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~ 312 (514)
+.++|||++++++ .+.+|.++|+.+.+.... .++... ... .-......++|+|+| ...++.-.|+.|..||+
T Consensus 282 v~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi 359 (595)
T 1fwx_A 282 CNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNI 359 (595)
T ss_dssp EEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCEEEEEECTTS-EEEEEETTTTEEEEEEH
T ss_pred EEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-CCCCCcceEEECCCC-eEEEEEecCCcEEEEEh
Confidence 9999999988876 699999999985421100 000000 011 124567899999999 77788888999999999
Q ss_pred CCCc------cccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC---CeE-----------EEEEccC
Q 010256 313 RQSA------LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY---MTL-----------KLWDINM 371 (514)
Q Consensus 313 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~---~~i-----------~iwd~~~ 371 (514)
.+.. .....+..++.+.. .+|...-..+.++|||++|++... .++ .++|+..
T Consensus 360 ~~a~~~~~g~~~~~vi~kidV~yq-------pGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~ 431 (595)
T 1fwx_A 360 EDAIRAYAGEKVDPIKDKLDVHYQ-------PGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISG 431 (595)
T ss_dssp HHHHHHHHTCSCCCEEEEEECSSC-------EEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSS
T ss_pred hHhhhhhcccccceeEEEeecccc-------cccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCC
Confidence 7621 11112333333221 233333344567899999998642 344 8899853
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=9.8e-06 Score=69.88 Aligned_cols=190 Identities=7% Similarity=0.030 Sum_probs=116.4
Q ss_pred ceEEEEEecCCCcEEEEEec--CCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-
Q 010256 284 VITSAEFHPTHCNMLAYSSS--KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD- 360 (514)
Q Consensus 284 ~i~~v~~~p~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~- 360 (514)
....+.|+|++ .++++.+. ++.|+++|+.+++.. ..+..... .....+++. +..|+...
T Consensus 22 f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~----~~i~l~~~-----------~fgeGi~~~--g~~lyv~t~ 83 (266)
T 2iwa_A 22 FTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVE----NIHKMDDS-----------YFGEGLTLL--NEKLYQVVW 83 (266)
T ss_dssp CEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEE----EEEECCTT-----------CCEEEEEEE--TTEEEEEET
T ss_pred CcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEE----EEEecCCC-----------cceEEEEEe--CCEEEEEEe
Confidence 46899999987 66666553 689999999998864 22221110 112234544 55666554
Q ss_pred -CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeec-
Q 010256 361 -YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE- 438 (514)
Q Consensus 361 -~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~- 438 (514)
++.+.++|..+ .+.+.++... ... ...+++||+.|+.+..++.|.++|..+.+.. ..+.
T Consensus 84 ~~~~v~viD~~t-~~v~~~i~~g-~~~----------------g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~-~~I~V 144 (266)
T 2iwa_A 84 LKNIGFIYDRRT-LSNIKNFTHQ-MKD----------------GWGLATDGKILYGSDGTSILYEIDPHTFKLI-KKHNV 144 (266)
T ss_dssp TCSEEEEEETTT-TEEEEEEECC-SSS----------------CCEEEECSSSEEEECSSSEEEEECTTTCCEE-EEEEC
T ss_pred cCCEEEEEECCC-CcEEEEEECC-CCC----------------eEEEEECCCEEEEECCCCeEEEEECCCCcEE-EEEEE
Confidence 49999999987 7778777543 111 3446678887777777899999999887544 3333
Q ss_pred C-CCc---ceeEEEECCCCCceeecCCCCeEEEeeCCCCCc-cccCCccc---------ccccceEEEEEcCCCCEEEEE
Q 010256 439 A-SKN---PMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSA-LDANGNAF---------DFSMKLLHLAWHPSENSIACA 504 (514)
Q Consensus 439 ~-~~~---~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~-~~~~~~~~---------~~~~~v~~~~~spd~~~l~~~ 504 (514)
+ ... ..+.+.+. +++..+....++.|.+++-..... ..+..... ........++|+|+++.|.++
T Consensus 145 g~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVT 223 (266)
T 2iwa_A 145 KYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVT 223 (266)
T ss_dssp EETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEE
T ss_pred CCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEE
Confidence 1 112 35577777 676666666677777743322110 01110000 012356899999999888876
Q ss_pred e--cCcEEE
Q 010256 505 A--SNSLYM 511 (514)
Q Consensus 505 ~--~~~~~i 511 (514)
+ .+.+++
T Consensus 224 gk~~~~v~~ 232 (266)
T 2iwa_A 224 GKLWPKLFE 232 (266)
T ss_dssp ETTCSEEEE
T ss_pred CCCCCeEEE
Confidence 6 444444
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.58 E-value=1.4e-05 Score=74.31 Aligned_cols=264 Identities=9% Similarity=0.071 Sum_probs=139.3
Q ss_pred CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEEEeeCCC
Q 010256 46 SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSAN 125 (514)
Q Consensus 46 ~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~ 125 (514)
++..++.++.++.|..+|..+++.. . ...... ........ .
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~---------------------W--~~~~~~------------~~~~~p~~--~-- 142 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVA---------------------W--QTKVAG------------EALSRPVV--S-- 142 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEE---------------------E--EEECSS------------CCCSCCEE--E--
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEE---------------------E--EEeCCC------------ceEcCCEE--E--
Confidence 3557777888999999998877742 1 111111 00111112 1
Q ss_pred CcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCC
Q 010256 126 SALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVS 205 (514)
Q Consensus 126 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 205 (514)
+..+++++.++.|..+|..+++............... ........ ++ .+ +.+..++
T Consensus 143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~----------~~~~~~~~-~~-~v------------~~g~~~g 198 (376)
T 3q7m_A 143 DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR----------GESAPTTA-FG-AA------------VVGGDNG 198 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C----------CCCCCEEE-TT-EE------------EECCTTT
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec----------CCCCcEEE-CC-EE------------EEEcCCC
Confidence 2378888889999999999998766555432110000 00011111 22 22 5566677
Q ss_pred cEEeceeeccccccccccccccccccCc------cCeEEEEECC--CCCEEEEe-cCCeEEEEeccCCCceeeeeccCCC
Q 010256 206 SLRLPVVVTSQETNLVAGCRRIYAHAHD------YHINSISNNS--DGETFISA-DDLRINLWNLEISNQSFNIVDVKPA 276 (514)
Q Consensus 206 ~i~i~~~~~~~~~~~~~~~~~~~~~~h~------~~v~~~~~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~ 276 (514)
.+..+| ..+.+. ...+..... ..+..+.-.| .+..+..+ .++.+..+|.++++.....
T Consensus 199 ~l~~~d-~~tG~~------~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~------ 265 (376)
T 3q7m_A 199 RVSAVL-MEQGQM------IWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKR------ 265 (376)
T ss_dssp EEEEEE-TTTCCE------EEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEE------
T ss_pred EEEEEE-CCCCcE------EEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeec------
Confidence 777766 221111 111000000 0000000111 23455555 7899999999877655432
Q ss_pred cccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEE
Q 010256 277 NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI 356 (514)
Q Consensus 277 ~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 356 (514)
. ......+... + ..++.++.++.+..+|..+++..++. +... ...+...... +..|
T Consensus 266 ~----~~~~~~~~~~--~-~~l~~~~~~g~l~~~d~~tG~~~w~~----~~~~-----------~~~~~~~~~~--~~~l 321 (376)
T 3q7m_A 266 E----LGSVNDFIVD--G-NRIYLVDQNDRVMALTIDGGVTLWTQ----SDLL-----------HRLLTSPVLY--NGNL 321 (376)
T ss_dssp C----CCCEEEEEEE--T-TEEEEEETTCCEEEEETTTCCEEEEE----CTTT-----------TSCCCCCEEE--TTEE
T ss_pred c----CCCCCCceEE--C-CEEEEEcCCCeEEEEECCCCcEEEee----cccC-----------CCcccCCEEE--CCEE
Confidence 1 1223344443 3 46777888999999999998764321 1000 0112222222 4456
Q ss_pred EEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEe
Q 010256 357 LSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (514)
Q Consensus 357 ~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 426 (514)
+.++ +|.|.++|..+ ++.+........... ..... .+..|+.++.+|.|+.|+
T Consensus 322 ~v~~~~g~l~~~d~~t-G~~~~~~~~~~~~~~--------------~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 322 VVGDSEGYLHWINVED-GRFVAQQKVDSSGFQ--------------TEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEECTTSEEEEEETTT-CCEEEEEECCTTCBC--------------SCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred EEEeCCCeEEEEECCC-CcEEEEEecCCCcce--------------eCCEE--ECCEEEEEeCCCEEEEEe
Confidence 6665 49999999987 777766654221110 01222 245677888999999987
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.6e-08 Score=93.70 Aligned_cols=176 Identities=9% Similarity=0.025 Sum_probs=86.6
Q ss_pred CCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccc
Q 010256 244 DGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHS 322 (514)
Q Consensus 244 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 322 (514)
++..++++ .|+.|+.||..+++...+. .. ..+.+..+..++ .++++++.|+.|+.||..+++..+...
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~--------~~--~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~~~w~~~ 76 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTL--------KE--DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNEGLTKLP 76 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEE--------EC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEe--------cC--CCceecceEcCC-CEEEEeCCCCEEEEEECCCCceeeeee
Confidence 46677777 8999999999988766543 11 233344445566 677778899999999998887642211
Q ss_pred cceeccCCCCccceeeccccceeEEEEecCCCEEEEE-eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccce
Q 010256 323 KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 401 (514)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 401 (514)
. .... .. ...++ +..++ .++++ .++.|+.||..+ ++.+..+..+.
T Consensus 77 ~--~~~~------~~--~~sp~----~~~~~-~v~~g~~dg~v~a~D~~t-G~~~w~~~~~~------------------ 122 (369)
T 2hz6_A 77 F--TIPE------LV--QASPC----RSSDG-ILYMGKKQDIWYVIDLLT-GEKQQTLSSAF------------------ 122 (369)
T ss_dssp C--CHHH------HH--TTCSC----C------CCCCEEEEEEEEECCC-------------------------------
T ss_pred c--cCcc------cc--ccCce----EecCC-EEEEEeCCCEEEEEECCC-CcEEEEecCCC------------------
Confidence 0 0000 00 00111 11233 44554 458999999997 77776665443
Q ss_pred eeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCC---CceeecCCCCeEEEe
Q 010256 402 FECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSR---PSRPLGSLSGVVRRV 468 (514)
Q Consensus 402 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~s~s~d~~v~i~ 468 (514)
...++|++..|++++.|+.|+.||..+++.+ ..+..+ .....++.++. ..+++++.|+.+..+
T Consensus 123 -~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~-W~~~~~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a~ 188 (369)
T 2hz6_A 123 -ADSLSPSTSLLYLGRTEYTITMYDTKTRELR-WNATYF--DYAASLPEDDVDYKMSHFVSNGDGLVVTV 188 (369)
T ss_dssp -----------EEEEEEEEEEECCCSSSSSCC-CEEEEE--EECCBCCCCCTTCCCCEEEEETSCEEEEE
T ss_pred -cccccccCCEEEEEecCCEEEEEECCCCCEE-EeEecc--cccCccccCCccccceEEEECCCCEEEEE
Confidence 2334568888999999999999999988543 222211 11223333332 456677888988883
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.53 E-value=2.3e-05 Score=66.70 Aligned_cols=190 Identities=13% Similarity=0.179 Sum_probs=112.6
Q ss_pred cceEEEEEcCCCCeEEEecCCC--eEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccc
Q 010256 36 DIISAIEFDKSGDHLATGDRGG--RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (514)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (514)
.....+.|+ ++.++.+.+.+| .|+++|+.+++.. ..+.-. .
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~-----------------------~~~~l~-------------~ 85 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTL-----------------------QQIELG-------------K 85 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEE-----------------------EEEECC-------------T
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEE-----------------------EEEecC-------------C
Confidence 445789998 676666666665 8999999988753 111111 1
Q ss_pred ceeE--EEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 114 KINK--IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 114 ~v~~--i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
.... ++. .. +++.++.-.++.+.++|..+.+....+..... ...+++|++.+
T Consensus 86 ~~FgeGit~--~g-~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~e------------------G~glt~dg~~L----- 139 (262)
T 3nol_A 86 RYFGEGISD--WK-DKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGE------------------GWGLTHNDQYL----- 139 (262)
T ss_dssp TCCEEEEEE--ET-TEEEEEESSSSEEEEEETTTCCEEEEEECSSC------------------CCCEEECSSCE-----
T ss_pred ccceeEEEE--eC-CEEEEEEeeCCEEEEEECccCcEEEEEECCCC------------------ceEEecCCCEE-----
Confidence 2222 333 22 23444456789999999999988777765421 34556777776
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCc-cCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHD-YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
+....++.|.++| ..+.+. .........+.. ..++.+.|. +|+..+.. .+..|.+.|.++++.. .
T Consensus 140 -------~~SdGs~~i~~iD-p~T~~v---~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~-~ 206 (262)
T 3nol_A 140 -------IMSDGTPVLRFLD-PESLTP---VRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVT-G 206 (262)
T ss_dssp -------EECCSSSEEEEEC-TTTCSE---EEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEE-E
T ss_pred -------EEECCCCeEEEEc-CCCCeE---EEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEE-E
Confidence 5555577788877 222111 111111001111 345567776 77766666 7889999999866543 4
Q ss_pred eeccCC---Cc--ccccCCceEEEEEecCCCcEEEEE
Q 010256 270 IVDVKP---AN--MEDLTEVITSAEFHPTHCNMLAYS 301 (514)
Q Consensus 270 ~~~~~~---~~--~~~~~~~i~~v~~~p~~~~~l~~~ 301 (514)
.+++.. .. ........+.|+|+|++..++++|
T Consensus 207 ~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 207 IIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 444321 00 111234678999999984555544
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.50 E-value=3.6e-05 Score=65.48 Aligned_cols=190 Identities=11% Similarity=0.078 Sum_probs=114.8
Q ss_pred CceEEEEEecCCCcEEEEEecCC--eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe
Q 010256 283 EVITSAEFHPTHCNMLAYSSSKG--SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD 360 (514)
Q Consensus 283 ~~i~~v~~~p~~~~~l~~~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~ 360 (514)
.....+.|+ ++ .++.+.+.+| .|+.+|+.+++... ..... .......+.+++..|....
T Consensus 43 ~ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv~~----~~~l~-------------~~~FgeGit~~g~~ly~lt 103 (262)
T 3nol_A 43 AFTEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGKTLQ----QIELG-------------KRYFGEGISDWKDKIVGLT 103 (262)
T ss_dssp CEEEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCCEEE----EEECC-------------TTCCEEEEEEETTEEEEEE
T ss_pred cccceEEEE-CC-EEEEECCCCCCceEEEEECCCCcEEE----EEecC-------------CccceeEEEEeCCEEEEEE
Confidence 334788998 66 7788887776 89999999998742 22221 1233333334455666544
Q ss_pred --CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeec
Q 010256 361 --YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE 438 (514)
Q Consensus 361 --~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 438 (514)
++.+.+||..+ .+.+.++..... ...+++|++.|+.+..++.|.++|..+.+.. ..+.
T Consensus 104 w~~~~v~v~D~~t-~~~~~ti~~~~e------------------G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~-~~I~ 163 (262)
T 3nol_A 104 WKNGLGFVWNIRN-LRQVRSFNYDGE------------------GWGLTHNDQYLIMSDGTPVLRFLDPESLTPV-RTIT 163 (262)
T ss_dssp SSSSEEEEEETTT-CCEEEEEECSSC------------------CCCEEECSSCEEECCSSSEEEEECTTTCSEE-EEEE
T ss_pred eeCCEEEEEECcc-CcEEEEEECCCC------------------ceEEecCCCEEEEECCCCeEEEEcCCCCeEE-EEEE
Confidence 59999999998 888888875432 2334457777776666788999999987544 3332
Q ss_pred C--CCcc---eeEEEECCCCCceeecCCCCeEEEeeCCC--CCc-cccCC---c---ccccccceEEEEEcCCCCEEEEE
Q 010256 439 A--SKNP---MRRQVQTPSRPSRPLGSLSGVVRRVKGAD--NSA-LDANG---N---AFDFSMKLLHLAWHPSENSIACA 504 (514)
Q Consensus 439 ~--~~~~---v~~~~~~~~~~~l~s~s~d~~v~i~~~~~--~~~-~~~~~---~---~~~~~~~v~~~~~spd~~~l~~~ 504 (514)
. ...+ ++.+.+. +|++.+..-.+..|.+++-.. ... ..+.. . ........+.|||+|+++.|.+.
T Consensus 164 V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVT 242 (262)
T 3nol_A 164 VTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVT 242 (262)
T ss_dssp CEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEE
T ss_pred eccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEE
Confidence 2 1222 3446665 676666665566666622111 100 00100 0 00113456889999999998888
Q ss_pred ecCcEEEE
Q 010256 505 ASNSLYMY 512 (514)
Q Consensus 505 ~~~~~~i~ 512 (514)
+..-=.+|
T Consensus 243 GK~Wp~~~ 250 (262)
T 3nol_A 243 GKLWPKVF 250 (262)
T ss_dssp ETTCSEEE
T ss_pred CCCCCceE
Confidence 75543333
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.49 E-value=0.00052 Score=61.46 Aligned_cols=193 Identities=12% Similarity=0.071 Sum_probs=104.0
Q ss_pred CeEEEEECCCCCEEEEe-cC--CeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEE
Q 010256 235 HINSISNNSDGETFISA-DD--LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd 311 (514)
.+..++++++++++++. .. ..|..+|..+++. ..+... . .......++..+.+ ..+++-..++.|..+|
T Consensus 73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~-~~~~~~-----~-~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d 144 (306)
T 2p4o_A 73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV-ETLLTL-----P-DAIFLNGITPLSDT-QYLTADSYRGAIWLID 144 (306)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE-EEEEEC-----T-TCSCEEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred CceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE-EEEEeC-----C-CccccCcccccCCC-cEEEEECCCCeEEEEe
Confidence 36788999999876665 32 2466667654432 222111 1 11223455555554 5555555688999999
Q ss_pred cCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC--CeEEEEEccCCCCc--eeeeeecccccc
Q 010256 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGP--VATFQVHEHLRP 387 (514)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~~~~~--~~~~~~~~~~~~ 387 (514)
..++... +......-.. ............+ +|+++.|+.++. +.|..+++...++. ...+......
T Consensus 145 ~~~~~~~---v~~~~~~~~~---~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P-- 214 (306)
T 2p4o_A 145 VVQPSGS---IWLEHPMLAR---SNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNI-- 214 (306)
T ss_dssp TTTTEEE---EEEECGGGSC---SSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCC--
T ss_pred CCCCcEe---EEEECCcccc---ccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCC--
Confidence 7654210 0000000000 0000001123445 888888777643 89999998742221 1111110000
Q ss_pred ccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCcee-eeeecCCCcceeEEEEC---CCCCceeecC
Q 010256 388 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE-STTLEASKNPMRRQVQT---PSRPSRPLGS 460 (514)
Q Consensus 388 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~---~~~~~l~s~s 460 (514)
..++++++|+++++....+.|.+++.. ++.. ...+........+++|. |+++.|...+
T Consensus 215 --------------~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 215 --------------DDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp --------------SSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred --------------CCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEEC
Confidence 178999999988777778899999975 4322 11233333557788998 7866554443
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00024 Score=63.74 Aligned_cols=234 Identities=8% Similarity=0.006 Sum_probs=127.8
Q ss_pred cCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC-C-eEEEE
Q 010256 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-G-SIRLI 310 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d-g-~i~~w 310 (514)
.....++|+++++++++- .++.|..||.+. + ....+ .....+..+++.+++ +++++.... + .|..+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~-~~~~~--------~~~~~p~gia~~~dG-~l~vad~~~~~~~v~~~ 100 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHA--------TVEGKVSGLAFTSNG-DLVATGWNADSIPVVSL 100 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEE--------ECSSEEEEEEECTTS-CEEEEEECTTSCEEEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC-c-eEEEE--------eCCCCceeEEEcCCC-cEEEEeccCCcceEEEE
Confidence 456789999999988877 789999999873 2 22221 123468899999998 665554332 2 46667
Q ss_pred EcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCC-ceeeeeeccccccc
Q 010256 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSG-PVATFQVHEHLRPK 388 (514)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~-~~~~~~~~~~~~~~ 388 (514)
|..+++.. ....... ......++..+++..+++-. .+.|.++|... ++ .+......-.....
T Consensus 101 d~~~g~~~----~~~~~~~-----------~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~-~~~~v~~~~~~~~~~~~ 164 (306)
T 2p4o_A 101 VKSDGTVE----TLLTLPD-----------AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQ-PSGSIWLEHPMLARSNS 164 (306)
T ss_dssp ECTTSCEE----EEEECTT-----------CSCEEEEEESSSSEEEEEETTTTEEEEEETTT-TEEEEEEECGGGSCSST
T ss_pred cCCCCeEE----EEEeCCC-----------ccccCcccccCCCcEEEEECCCCeEEEEeCCC-CcEeEEEECCccccccc
Confidence 77666531 1111100 01223444455554444443 48888888753 21 11111000000000
Q ss_pred cccccccCCccceeeEEEcCCCCEEEEE-eCCCcEEEEecCC-Ccee-eeeecCCCcceeEEEECCCCCceeecCCCCeE
Q 010256 389 LCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSE-GSAE-STTLEASKNPMRRQVQTPSRPSRPLGSLSGVV 465 (514)
Q Consensus 389 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~~~-~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v 465 (514)
......-..+ +++++.|..+ ...++|+.|++.. +... ...+. .......+++.++|+++++....+.|
T Consensus 165 ------~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V 235 (306)
T 2p4o_A 165 ------ESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSV 235 (306)
T ss_dssp ------TCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCE
T ss_pred ------cCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeE
Confidence 0001111134 7888766544 5678999999874 2211 11111 11345678999999887777766777
Q ss_pred EEeeCC-CCCccccCCcccccccceEEEEEc---CCCCEEEEEec
Q 010256 466 RRVKGA-DNSALDANGNAFDFSMKLLHLAWH---PSENSIACAAS 506 (514)
Q Consensus 466 ~i~~~~-~~~~~~~~~~~~~~~~~v~~~~~s---pd~~~l~~~~~ 506 (514)
.+++.. +.. .+. .........++++|. ||++.|.+++.
T Consensus 236 ~~~~~~G~~~--~~~-~~~~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 236 VRIAPDRSTT--IIA-QAEQGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp EEECTTCCEE--EEE-CGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred EEECCCCCEE--EEe-ecccccCCceEEEEecccCCCCEEEEECC
Confidence 764321 110 000 000113568999999 89888776653
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=9e-05 Score=72.60 Aligned_cols=55 Identities=13% Similarity=0.097 Sum_probs=36.9
Q ss_pred CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCcee
Q 010256 362 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 362 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
+.|..||..+ ++.+-++....... ...+...+..++.++.||.|+.||.++++.+
T Consensus 444 g~l~a~D~~t-G~~~W~~~~~~~~~----------------~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~l 498 (571)
T 2ad6_A 444 GQIRAFDLTT-GKAKWTKWEKFAAW----------------GGTLYTKGGLVWYATLDGYLKALDNKDGKEL 498 (571)
T ss_dssp EEEEEECTTT-CCEEEEEEESSCCC----------------SBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CeEEEEECCC-CCEEEEecCCCCcc----------------ceeEEECCCEEEEEcCCCeEEEEECCCCCEE
Confidence 6788888876 76665554332111 2223335667778999999999999998554
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.40 E-value=0.00074 Score=57.83 Aligned_cols=177 Identities=12% Similarity=0.161 Sum_probs=97.7
Q ss_pred CeEEEEECCCCCEEEEe-cCCeEEEEeccCCCce--eeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEE
Q 010256 235 HINSISNNSDGETFISA-DDLRINLWNLEISNQS--FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd 311 (514)
....|++.+++.++++. .++.+.++++...... .....+.. .....+.....++|+|.+ +.|+++.......+|.
T Consensus 71 D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~-~~~~~N~g~EGLA~d~~~-~~L~va~E~~p~~i~~ 148 (255)
T 3qqz_A 71 DLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPL-QESPTNCGFEGLAYSRQD-HTFWFFKEKNPIEVYK 148 (255)
T ss_dssp SEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCC-SSCCCSSCCEEEEEETTT-TEEEEEEESSSEEEEE
T ss_pred ChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeecccc-ccccccCCcceEEEeCCC-CEEEEEECcCCceEEE
Confidence 35567888888776776 7788888887654431 12111110 011235567899999998 5666666665666666
Q ss_pred cCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEE-EeC-CeEEEEEccCCCCceeeeeecccccccc
Q 010256 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS-RDY-MTLKLWDINMDSGPVATFQVHEHLRPKL 389 (514)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 389 (514)
+. +..........+... .. -..+...+.+++++|....++. .+. ..|.++|.. ++.+..+....+.-. +
T Consensus 149 ~~-g~~~~~~l~i~~~~~---~~--~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~--g~~~~~~~L~~g~~~-l 219 (255)
T 3qqz_A 149 VN-GLLSSNELHISKDKA---LQ--RQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV--GEVIGEMSLTKGSRG-L 219 (255)
T ss_dssp EE-STTCSSCCEEEECHH---HH--HTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT--CCEEEEEECSTTGGG-C
T ss_pred Ec-ccccCCceeeecchh---hc--cccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC--CCEEEEEEcCCccCC-c
Confidence 65 211100011111100 00 0001235789999996555544 444 888999876 666666654432100 0
Q ss_pred ccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecC
Q 010256 390 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 390 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 428 (514)
. ..+..-..|+|.++|+++++ +.-+.++.|...
T Consensus 220 ~-----~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~~ 252 (255)
T 3qqz_A 220 S-----HNIKQAEGVAMDASGNIYIV-SEPNRFYRFTPQ 252 (255)
T ss_dssp S-----SCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC-
T ss_pred c-----cccCCCCeeEECCCCCEEEE-cCCceEEEEEec
Confidence 0 00011127999999986655 666777777543
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.38 E-value=5.2e-05 Score=64.52 Aligned_cols=183 Identities=11% Similarity=-0.027 Sum_probs=112.8
Q ss_pred cCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEc
Q 010256 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~ 312 (514)
.-...+.|+. +.++.+. .+|.|+.+|+++++....+ +.+ ...-..+++ ++..+++..-.++.+.+||.
T Consensus 55 ~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~------~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~ 123 (268)
T 3nok_A 55 AFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME--RLG------NIFAEGLAS--DGERLYQLTWTEGLLFTWSG 123 (268)
T ss_dssp CCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE--ECT------TCCEEEEEE--CSSCEEEEESSSCEEEEEET
T ss_pred cccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE--CCC------CcceeEEEE--eCCEEEEEEccCCEEEEEEC
Confidence 3457888874 4444554 7889999999987765443 211 111123444 44356666777999999999
Q ss_pred CCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeecccccccccc
Q 010256 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCD 391 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 391 (514)
.+.+.. ..+.... .-. .++++++.|+.++ .++|.++|..+ .+.+.++.......
T Consensus 124 ~Tl~~~----~ti~~~~-------------eGw--GLt~Dg~~L~vSdGs~~l~~iDp~T-~~v~~~I~V~~~g~----- 178 (268)
T 3nok_A 124 MPPQRE----RTTRYSG-------------EGW--GLCYWNGKLVRSDGGTMLTFHEPDG-FALVGAVQVKLRGQ----- 178 (268)
T ss_dssp TTTEEE----EEEECSS-------------CCC--CEEEETTEEEEECSSSEEEEECTTT-CCEEEEEECEETTE-----
T ss_pred CcCcEE----EEEeCCC-------------cee--EEecCCCEEEEECCCCEEEEEcCCC-CeEEEEEEeCCCCc-----
Confidence 998763 3333211 112 3335678777765 48999999987 77777776543211
Q ss_pred ccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCC-------------CcceeEEEECCCCCce-e
Q 010256 392 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEAS-------------KNPMRRQVQTPSRPSR-P 457 (514)
Q Consensus 392 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l-~ 457 (514)
.+..+..+.|. +|++.+..-.++.|.+.|.++++.. ..+.-. ..-.+.+++.|+++.| +
T Consensus 179 -----~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~-~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfV 251 (268)
T 3nok_A 179 -----PVELINELECA-NGVIYANIWHSSDVLEIDPATGTVV-GVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFM 251 (268)
T ss_dssp -----ECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEE-EEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEE
T ss_pred -----ccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEE-EEEECCCCcccccccccCcCCceEEEEEcCCCCEEEE
Confidence 01112256666 7766655556789999999998543 333211 1345789999976544 4
Q ss_pred ec
Q 010256 458 LG 459 (514)
Q Consensus 458 s~ 459 (514)
+|
T Consensus 252 TG 253 (268)
T 3nok_A 252 TG 253 (268)
T ss_dssp EE
T ss_pred eC
Confidence 43
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00063 Score=59.53 Aligned_cols=191 Identities=7% Similarity=-0.053 Sum_probs=112.3
Q ss_pred CeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEc
Q 010256 235 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~ 312 (514)
.+..++|++++..|..+ ..+.|..+++..... ..++ .........++++|++..++++-...+.|.++++
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~-------~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~ 108 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTII-------RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKM 108 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEE-------CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EEEE-------ECCCCCccEEEEEecCCeEEEEECCCCEEEEEEc
Confidence 46789999976666655 688999999874432 2211 1122467899999976356666666789999998
Q ss_pred CCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe----CCeEEEEEccCCCCceeeeeeccccccc
Q 010256 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----YMTLKLWDINMDSGPVATFQVHEHLRPK 388 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~~ 388 (514)
..... ..+... .......++++|++..|+.++ .+.|..+++. +.....+... ..
T Consensus 109 ~g~~~-----~~~~~~-----------~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d--g~~~~~~~~~-~~--- 166 (267)
T 1npe_A 109 DGTQR-----RVLFDT-----------GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD--GTNRRILAQD-NL--- 166 (267)
T ss_dssp TSCSC-----EEEECS-----------SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT--SCCCEEEECT-TC---
T ss_pred CCCCE-----EEEEEC-----------CCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC--CCCcEEEEEC-CC---
Confidence 64321 111100 013468899999766555433 2678888876 3333322111 00
Q ss_pred cccccccCCccceeeEEEcCCCCEEEEE-eCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 389 LCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 389 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
..-..++++++++.|..+ ...+.|.++++... .....+..-. ....++.. .+.++++....+.|..
T Consensus 167 ----------~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~-~~~~~~~~~~-~P~gi~~d-~~~lyva~~~~~~v~~ 233 (267)
T 1npe_A 167 ----------GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP-GRRKVLEGLQ-YPFAVTSY-GKNLYYTDWKTNSVIA 233 (267)
T ss_dssp ----------SCEEEEEEETTTTEEEEEETTTTEEEEEETTEE-EEEEEEECCC-SEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred ----------CCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC-ceEEEecCCC-CceEEEEe-CCEEEEEECCCCeEEE
Confidence 001279999987766544 46689999998743 2223333322 23455554 3444455545567766
Q ss_pred e
Q 010256 468 V 468 (514)
Q Consensus 468 ~ 468 (514)
+
T Consensus 234 ~ 234 (267)
T 1npe_A 234 M 234 (267)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=0.00011 Score=66.57 Aligned_cols=194 Identities=11% Similarity=0.017 Sum_probs=110.6
Q ss_pred CeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCC------------cccccCCceEEEEEec-CCCcEEEE
Q 010256 235 HINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPA------------NMEDLTEVITSAEFHP-THCNMLAY 300 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~------------~~~~~~~~i~~v~~~p-~~~~~l~~ 300 (514)
...+++++++++++.++ .++.|..|+....... .+...... ........+..+++.+ ++ + |+.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~-l~v 96 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-Q-LYI 96 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-E-EEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCC-c-EEE
Confidence 35678899999867777 8899999988743321 11000000 0001123578999998 65 4 444
Q ss_pred EecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec-CCCEEEEEe------------------C
Q 010256 301 SSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR-NGRHILSRD------------------Y 361 (514)
Q Consensus 301 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~------------------~ 361 (514)
+...+.|..+|..++.. ..+..... .........+++.+ +|++.++-. .
T Consensus 97 ~d~~~~i~~~d~~~g~~-----~~~~~~~~-------~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~ 164 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGHA-----TQLATSVD-------GVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKT 164 (322)
T ss_dssp EETTTEEEEECTTCEEC-----EEEESEET-------TEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCC
T ss_pred EECCCCEEEEeCCCCEE-----EEecccCC-------CCcccccceEEEecCCCEEEEECCcccccccccceehcccCCC
Confidence 55556688888765532 11111000 00113467899999 998777632 1
Q ss_pred CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEE-eCCCcEEEEecCCCce-eeeeecC
Q 010256 362 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSA-ESTTLEA 439 (514)
Q Consensus 362 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~~~~~~-~~~~~~~ 439 (514)
+.|..||... ++ +..+...-.. -..++|+|+|+.|..+ +..+.|++|++..... ....+..
T Consensus 165 g~v~~~d~~~-~~-~~~~~~~~~~---------------p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~ 227 (322)
T 2fp8_A 165 GRLIKYDPST-KE-TTLLLKELHV---------------PGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK 227 (322)
T ss_dssp EEEEEEETTT-TE-EEEEEEEESC---------------CCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE
T ss_pred ceEEEEeCCC-CE-EEEeccCCcc---------------CcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe
Confidence 5677787654 32 2222111000 1179999999866555 5668999999874211 0111111
Q ss_pred CCcceeEEEECCCCCceeecCC
Q 010256 440 SKNPMRRQVQTPSRPSRPLGSL 461 (514)
Q Consensus 440 ~~~~v~~~~~~~~~~~l~s~s~ 461 (514)
... ...+++.++|++.++...
T Consensus 228 ~~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 228 IPN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp CSS-EEEEEECTTSCEEEEEEE
T ss_pred CCC-CCCeEECCCCCEEEEecC
Confidence 122 667899999987766544
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.33 E-value=5.7e-05 Score=64.29 Aligned_cols=185 Identities=11% Similarity=0.040 Sum_probs=112.5
Q ss_pred CceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe--
Q 010256 283 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-- 360 (514)
Q Consensus 283 ~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-- 360 (514)
.....+.|+. + .++.+.+.+|.|+.+|+.+++...+ + .. .........+++..|+...
T Consensus 55 ~ftqGL~~~~-~-~Ly~stG~~g~v~~iD~~Tgkv~~~----~-l~-------------~~~FgeGit~~g~~Ly~ltw~ 114 (268)
T 3nok_A 55 AFTQGLVFHQ-G-HFFESTGHQGTLRQLSLESAQPVWM----E-RL-------------GNIFAEGLASDGERLYQLTWT 114 (268)
T ss_dssp CCEEEEEEET-T-EEEEEETTTTEEEECCSSCSSCSEE----E-EC-------------TTCCEEEEEECSSCEEEEESS
T ss_pred cccceEEEEC-C-EEEEEcCCCCEEEEEECCCCcEEeE----E-CC-------------CCcceeEEEEeCCEEEEEEcc
Confidence 3457888874 4 7888888999999999999987432 2 11 1222222333455555443
Q ss_pred CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecC-
Q 010256 361 YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA- 439 (514)
Q Consensus 361 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~- 439 (514)
++.+.+||..+ .+.+.++....... .++ +|++.|+.+..++.|+++|..+.+.. ..+..
T Consensus 115 ~~~v~V~D~~T-l~~~~ti~~~~eGw----------------GLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~-~~I~V~ 174 (268)
T 3nok_A 115 EGLLFTWSGMP-PQRERTTRYSGEGW----------------GLC--YWNGKLVRSDGGTMLTFHEPDGFALV-GAVQVK 174 (268)
T ss_dssp SCEEEEEETTT-TEEEEEEECSSCCC----------------CEE--EETTEEEEECSSSEEEEECTTTCCEE-EEEECE
T ss_pred CCEEEEEECCc-CcEEEEEeCCCcee----------------EEe--cCCCEEEEECCCCEEEEEcCCCCeEE-EEEEeC
Confidence 59999999997 88888887532211 344 57888777777899999999987544 33332
Q ss_pred -CCc---ceeEEEECCCCCceeecCCCCeEEEeeCCC--CCc-cccCC---c----ccccccceEEEEEcCCCCEEEEEe
Q 010256 440 -SKN---PMRRQVQTPSRPSRPLGSLSGVVRRVKGAD--NSA-LDANG---N----AFDFSMKLLHLAWHPSENSIACAA 505 (514)
Q Consensus 440 -~~~---~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~--~~~-~~~~~---~----~~~~~~~v~~~~~spd~~~l~~~~ 505 (514)
+.. .++.+.+. +|++.+..-.+..|.+++-.. ... ..+.. . ......-.+.|||+|+++.|.+.+
T Consensus 175 ~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 175 LRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp ETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 222 23455665 666666665566666522111 110 00100 0 011234568899999988888777
Q ss_pred cCc
Q 010256 506 SNS 508 (514)
Q Consensus 506 ~~~ 508 (514)
..-
T Consensus 254 K~W 256 (268)
T 3nok_A 254 KLW 256 (268)
T ss_dssp TTC
T ss_pred CCC
Confidence 543
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.31 E-value=0.0022 Score=59.46 Aligned_cols=171 Identities=9% Similarity=0.022 Sum_probs=96.3
Q ss_pred EEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC-CeEEEEEcC
Q 010256 237 NSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-GSIRLIDMR 313 (514)
Q Consensus 237 ~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d-g~i~~wd~~ 313 (514)
..+++++.+..|..+ ..+.|.+.+++... ...+ +.........++++|.++.++++-... +.|..+++.
T Consensus 162 ~glavd~~~g~lY~~d~~~~~I~~~~~dg~~-~~~l-------~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d 233 (386)
T 3v65_B 162 GGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RKVL-------LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD 233 (386)
T ss_dssp CCEEEETTTTEEEEEETTTTEEEECBTTSCS-CEEE-------ECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred cEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc-eEEe-------ecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC
Confidence 457777755554444 57788888876332 2111 112235578999999774555554445 788888876
Q ss_pred CCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC--CeEEEEEccCCCCceeeeeecccccccccc
Q 010256 314 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLCD 391 (514)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 391 (514)
.... ..+-. ........++++|++..|+.++. +.|..+|+.. .....+......
T Consensus 234 G~~~-----~~~~~-----------~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG--~~~~~~~~~~~~------ 289 (386)
T 3v65_B 234 GSGR-----RIIAD-----------THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG--SHRKAVISQGLP------ 289 (386)
T ss_dssp SCSC-----EEEEC-----------SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS--CSCEEEECSSCS------
T ss_pred CCCc-----EEEEE-----------CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC--CeeEEEEECCCC------
Confidence 5321 11111 11135688999988777777643 7888888763 322222211100
Q ss_pred ccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEE
Q 010256 392 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQ 449 (514)
Q Consensus 392 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 449 (514)
. -..+++ .++.++++-...+.|..++..+++.. .++.........+++
T Consensus 290 -----~---P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~-~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 290 -----H---PFAITV-FEDSLYWTDWHTKSINSANKFTGKNQ-EIIRNKLHFPMDIHT 337 (386)
T ss_dssp -----S---EEEEEE-ETTEEEEEETTTTEEEEEETTTCCSC-EEEECSCSCCCCEEE
T ss_pred -----C---ceEEEE-ECCEEEEeeCCCCeEEEEECCCCcce-EEEccCCCCCceEEE
Confidence 0 126777 34555666667788999986666443 334333233334433
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.31 E-value=0.00039 Score=58.62 Aligned_cols=187 Identities=11% Similarity=0.091 Sum_probs=109.2
Q ss_pred CCceEEEEEecCCCcEEEEEecCC--eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE
Q 010256 282 TEVITSAEFHPTHCNMLAYSSSKG--SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR 359 (514)
Q Consensus 282 ~~~i~~v~~~p~~~~~l~~~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 359 (514)
......+.|++ + .++.+.+.+| .|+.+|+.+++.. ....... ........+.+..|...
T Consensus 20 ~~ftqGL~~~~-~-~LyestG~~g~S~v~~vD~~tgkv~----~~~~l~~-------------~~fgeGi~~~~~~ly~l 80 (243)
T 3mbr_X 20 TAFTEGLFYLR-G-HLYESTGETGRSSVRKVDLETGRIL----QRAEVPP-------------PYFGAGIVAWRDRLIQL 80 (243)
T ss_dssp TCCEEEEEEET-T-EEEEEECCTTSCEEEEEETTTCCEE----EEEECCT-------------TCCEEEEEEETTEEEEE
T ss_pred ccccccEEEEC-C-EEEEECCCCCCceEEEEECCCCCEE----EEEeCCC-------------CcceeEEEEeCCEEEEE
Confidence 34567899987 4 6777777754 8999999999864 2222221 22223233345556554
Q ss_pred e--CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee
Q 010256 360 D--YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTL 437 (514)
Q Consensus 360 ~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 437 (514)
. ++.+.+||.++ .+.+.++..... ...+.+|++.|+.+..++.|.++|..+.+.. ..+
T Consensus 81 tw~~~~v~v~D~~t-l~~~~ti~~~~~------------------Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~-~~I 140 (243)
T 3mbr_X 81 TWRNHEGFVYDLAT-LTPRARFRYPGE------------------GWALTSDDSHLYMSDGTAVIRKLDPDTLQQV-GSI 140 (243)
T ss_dssp ESSSSEEEEEETTT-TEEEEEEECSSC------------------CCEEEECSSCEEEECSSSEEEEECTTTCCEE-EEE
T ss_pred EeeCCEEEEEECCc-CcEEEEEeCCCC------------------ceEEeeCCCEEEEECCCCeEEEEeCCCCeEE-EEE
Confidence 3 49999999997 888888775432 2233456776666667889999999987543 333
Q ss_pred cC--CCc---ceeEEEECCCCCceeecCCCCeEEEeeCC--CCCc-cc---cCCcc----cccccceEEEEEcCCCCEEE
Q 010256 438 EA--SKN---PMRRQVQTPSRPSRPLGSLSGVVRRVKGA--DNSA-LD---ANGNA----FDFSMKLLHLAWHPSENSIA 502 (514)
Q Consensus 438 ~~--~~~---~v~~~~~~~~~~~l~s~s~d~~v~i~~~~--~~~~-~~---~~~~~----~~~~~~v~~~~~spd~~~l~ 502 (514)
+. +.. .++.+.+. +++..+..-.+..|.+++-. +... .. +.... .....-.+.|||+|+++.|.
T Consensus 141 ~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lf 219 (243)
T 3mbr_X 141 KVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLF 219 (243)
T ss_dssp ECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEE
T ss_pred EEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEE
Confidence 32 222 23445544 55655555444455441111 0000 00 00000 11234568899999998888
Q ss_pred EEecCc
Q 010256 503 CAASNS 508 (514)
Q Consensus 503 ~~~~~~ 508 (514)
+.+..-
T Consensus 220 VTGK~w 225 (243)
T 3mbr_X 220 VTGKRW 225 (243)
T ss_dssp EEETTC
T ss_pred EECCCC
Confidence 777543
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00022 Score=70.00 Aligned_cols=55 Identities=24% Similarity=0.238 Sum_probs=37.1
Q ss_pred CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCcee
Q 010256 362 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 362 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
+.|..||+.+ ++.+-......... .-.....+.+++.++.||.++.||.++++.+
T Consensus 466 G~l~A~D~~t-G~~~W~~~~~~~~~----------------~g~~~tagglvf~g~~dg~l~A~D~~tG~~l 520 (582)
T 1flg_A 466 GSLRAMDPVS-GKVVWEHKEHLPLW----------------AGVLATAGNLVFTGTGDGYFKAFDAKSGKEL 520 (582)
T ss_dssp EEEEEECTTT-CCEEEEEEESSCCC----------------SCCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ceEEEEECCC-CCEEEEecCCCCCc----------------ccceEeCCCEEEEECCCCcEEEEECCCCCEE
Confidence 6788888887 77665554332110 1112234678888999999999999998554
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00028 Score=59.55 Aligned_cols=182 Identities=9% Similarity=0.021 Sum_probs=109.6
Q ss_pred cCeEEEEECCCCCEEEEe-c--CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEE
Q 010256 234 YHINSISNNSDGETFISA-D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLI 310 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~w 310 (514)
.-...+.|++ +.++.+. . +..|+.+|+++++....+ .+..+ ..-..+++. +..+++..-.++.+.+|
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~------~l~~~-~fgeGi~~~--~~~ly~ltw~~~~v~v~ 90 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRA------EVPPP-YFGAGIVAW--RDRLIQLTWRNHEGFVY 90 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEE------ECCTT-CCEEEEEEE--TTEEEEEESSSSEEEEE
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEE------eCCCC-cceeEEEEe--CCEEEEEEeeCCEEEEE
Confidence 4466899987 4444444 4 459999999987655433 12111 111234444 33566667779999999
Q ss_pred EcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeecccccccc
Q 010256 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKL 389 (514)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 389 (514)
|..+.+.. ..+.... ....+.++++.|+.++ +++|.++|..+ .+.+.++.......
T Consensus 91 D~~tl~~~----~ti~~~~---------------~Gwglt~dg~~L~vSdgs~~l~~iDp~t-~~~~~~I~V~~~g~--- 147 (243)
T 3mbr_X 91 DLATLTPR----ARFRYPG---------------EGWALTSDDSHLYMSDGTAVIRKLDPDT-LQQVGSIKVTAGGR--- 147 (243)
T ss_dssp ETTTTEEE----EEEECSS---------------CCCEEEECSSCEEEECSSSEEEEECTTT-CCEEEEEECEETTE---
T ss_pred ECCcCcEE----EEEeCCC---------------CceEEeeCCCEEEEECCCCeEEEEeCCC-CeEEEEEEEccCCc---
Confidence 99998763 3333211 1123345677666654 48999999987 77777776543211
Q ss_pred ccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecC-------------CCcceeEEEECCCCCce
Q 010256 390 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA-------------SKNPMRRQVQTPSRPSR 456 (514)
Q Consensus 390 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l 456 (514)
.+..+..+.+. +|+..+..-.+..|.+.|..+++.. ..+.- ...-.+.+++.|+++.|
T Consensus 148 -------~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~-~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~l 218 (243)
T 3mbr_X 148 -------PLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVV-AWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRL 218 (243)
T ss_dssp -------ECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEE-EEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEE
T ss_pred -------ccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEE-EEEECCcCccccccccCCcCCceEEEEEcCCCCEE
Confidence 00111245554 6766655556789999999998543 33321 11345789999876544
Q ss_pred e
Q 010256 457 P 457 (514)
Q Consensus 457 ~ 457 (514)
.
T Consensus 219 f 219 (243)
T 3mbr_X 219 F 219 (243)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.26 E-value=7.7e-05 Score=75.95 Aligned_cols=193 Identities=12% Similarity=0.088 Sum_probs=105.4
Q ss_pred CeEEEEEC-CCCCEEEEe-c-C----CeEEEEeccCC-CceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC--
Q 010256 235 HINSISNN-SDGETFISA-D-D----LRINLWNLEIS-NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-- 304 (514)
Q Consensus 235 ~v~~~~~~-~~~~~l~s~-~-d----~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d-- 304 (514)
.+...+|+ |||++|+.+ + + .+|+++|+.++ +.... .+. ....+++|+||+ +.|+....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-------~~~---~~~~~~~WspDg-~~l~y~~~d~~ 243 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-------KVS---GTNGEIVWGPDH-TSLFYVTKDET 243 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-------CEE---EECSCCEECSST-TEEEEEEECTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-------ccc---CceeeEEEecCC-CEEEEEEECCC
Confidence 57789999 999998865 2 2 35999999876 42110 111 113467899999 666666654
Q ss_pred ---CeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe----CCeEEEEEccCCCCce-
Q 010256 305 ---GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----YMTLKLWDINMDSGPV- 376 (514)
Q Consensus 305 ---g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~----~~~i~iwd~~~~~~~~- 376 (514)
..|.++++.++.... ...+... .......+.|||||++|+... ...|.++|+..+....
T Consensus 244 ~~~~~v~~~~lgt~~~~~--~lv~~~~-----------~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~ 310 (751)
T 2xe4_A 244 LRENKVWRHVMGKLQSED--VCLYEEH-----------NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNT 310 (751)
T ss_dssp CCEEEEEEEETTSCGGGC--EEEEECC-----------CTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCC
T ss_pred CCCCEEEEEECCCCchhc--EEEEecC-----------CCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCce
Confidence 257777876654211 1122211 112356789999999988642 2578888887521122
Q ss_pred -eeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCC----CcEEEEecCCCceeeee-ecCCCc--ceeEEE
Q 010256 377 -ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS----NLFRVFGCSEGSAESTT-LEASKN--PMRRQV 448 (514)
Q Consensus 377 -~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~-~~~~~~--~v~~~~ 448 (514)
..+...... . .+++.|+.++.+++....+ ..|..+++.+.... .. +-.+.. .+..+.
T Consensus 311 ~~~l~~~~~~-----------~---~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~-~~~li~~~~~~~l~~~~ 375 (751)
T 2xe4_A 311 LEIVRPREKG-----------V---RYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDW-SHVLVDHSEDVFMESIA 375 (751)
T ss_dssp EEESSCCCTT-----------C---CEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCC-CCEEECCCSSEEEEEEE
T ss_pred eEEeecCCCC-----------c---eEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccc-eeeEECCCCCcEEEEEE
Confidence 222211110 0 1244444333444444443 35667776642121 22 222322 344555
Q ss_pred ECCCCCceeecCCCCeEEE
Q 010256 449 QTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 449 ~~~~~~~l~s~s~d~~v~i 467 (514)
+. .+.++++...++..++
T Consensus 376 ~~-~~~lv~~~~~~g~~~l 393 (751)
T 2xe4_A 376 VR-SNYLVVAGRRAGLTRI 393 (751)
T ss_dssp EC-SSEEEEEEEETTEEEE
T ss_pred EE-CCEEEEEEEeCCEEEE
Confidence 54 3445667777887776
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.24 E-value=0.0027 Score=57.86 Aligned_cols=157 Identities=10% Similarity=0.044 Sum_probs=92.8
Q ss_pred eEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC-CeEEEEEc
Q 010256 236 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-GSIRLIDM 312 (514)
Q Consensus 236 v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d-g~i~~wd~ 312 (514)
...+++++.+..|..+ ..+.|.+.+++.... ..+ ..........++++|.++.++++-... +.|..+++
T Consensus 118 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l-------~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~ 189 (349)
T 3v64_C 118 PGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KVL-------LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 189 (349)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEE-------ECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred ccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce-EEE-------EeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeC
Confidence 3568888765555444 678899999873322 111 112234578999999764555555555 78888887
Q ss_pred CCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC--CeEEEEEccCCCCceeeeeeccccccccc
Q 010256 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLC 390 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 390 (514)
..... ..+-. ........++++|++..|+.++. +.|..+|+.. .....+......
T Consensus 190 dG~~~-----~~~~~-----------~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG--~~~~~~~~~~~~----- 246 (349)
T 3v64_C 190 DGSGR-----RIIAD-----------THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG--SHRKAVISQGLP----- 246 (349)
T ss_dssp TSCSC-----EESCC-----------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEECSSCS-----
T ss_pred CCCCc-----EEEEE-----------CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC--CceEEEEeCCCC-----
Confidence 65321 11100 01135788999998877777643 8899999863 322222211100
Q ss_pred cccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCcee
Q 010256 391 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 391 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
. -..+++ .++.++++-...+.|..++..+++..
T Consensus 247 ------~---P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~ 279 (349)
T 3v64_C 247 ------H---PFAITV-FEDSLYWTDWHTKSINSANKFTGKNQ 279 (349)
T ss_dssp ------S---EEEEEE-ETTEEEEEETTTTEEEEEETTTCCSC
T ss_pred ------C---ceEEEE-ECCEEEEecCCCCeEEEEEccCCCcc
Confidence 0 126777 34555556566788888886666443
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=0.0016 Score=63.73 Aligned_cols=80 Identities=11% Similarity=0.163 Sum_probs=47.5
Q ss_pred EEEECCCCCEEEEe-cC----------------CeEEEEeccCCCceeeeeccCCCc---ccccCCceEEEEEe-cCCC-
Q 010256 238 SISNNSDGETFISA-DD----------------LRINLWNLEISNQSFNIVDVKPAN---MEDLTEVITSAEFH-PTHC- 295 (514)
Q Consensus 238 ~~~~~~~~~~l~s~-~d----------------~~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~i~~v~~~-p~~~- 295 (514)
.+++.++..++..+ .+ +.|..+|.++++...... ..+.. +.....++. +... .+|.
T Consensus 245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q-~~~~d~wd~d~~~~p~l-~d~~~~~G~~ 322 (599)
T 1w6s_A 245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQ-KTPHDEWDYAGVNVMML-SEQKDKDGKA 322 (599)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEE-SSTTCSSCCCCCCCCEE-EEEECTTSCE
T ss_pred ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEee-cCCCccccccCCCccEE-EeccccCCcE
Confidence 34566777777766 44 489999999877654431 11000 001112222 2232 4552
Q ss_pred -cEEEEEecCCeEEEEEcCCCcccc
Q 010256 296 -NMLAYSSSKGSIRLIDMRQSALCD 319 (514)
Q Consensus 296 -~~l~~~~~dg~i~~wd~~~~~~~~ 319 (514)
..++.++.+|.+.++|.++++.+.
T Consensus 323 ~~~v~~~~~~G~l~~lD~~tG~~lw 347 (599)
T 1w6s_A 323 RKLLTHPDRNGIVYTLDRTDGALVS 347 (599)
T ss_dssp EEEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEEEEECCCcEEEEEECCCCCEee
Confidence 367778899999999999998754
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00035 Score=70.02 Aligned_cols=252 Identities=8% Similarity=-0.008 Sum_probs=119.3
Q ss_pred eEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEe-cC-----CeE
Q 010256 236 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SK-----GSI 307 (514)
Q Consensus 236 v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~d-----g~i 307 (514)
..++++..++++++.| .+..+.+||..+..-. .+ . .+..... -.+++..+++ ++++.|+ .+ ..+
T Consensus 245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~-~~---~--~~~~~R~-~~s~~~~~dg-~iyv~GG~~~~~~~~~~~ 316 (656)
T 1k3i_A 245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWI-PG---P--DMQVARG-YQSSATMSDG-RVFTIGGSWSGGVFEKNG 316 (656)
T ss_dssp SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEE-EC---C--CCSSCCS-SCEEEECTTS-CEEEECCCCCSSSCCCCE
T ss_pred cccccCCCCCCEEEeCCCCCCceEEecCcCCcee-EC---C--CCCcccc-ccceEEecCC-eEEEEeCcccCCcccccc
Confidence 3456778899999987 5678999999855321 11 1 1111111 1345566787 7888888 34 468
Q ss_pred EEEEcCCCccccccccceeccCCCCcc-ceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccc
Q 010256 308 RLIDMRQSALCDTHSKLFEEQEAPGTR-SFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLR 386 (514)
Q Consensus 308 ~~wd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~ 386 (514)
.+||..+..-.. +........+... .....+.+.+..+.. .+|+.+..+....+..||... ..............
T Consensus 317 e~yd~~t~~W~~--~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg-~~g~~~~~~~~~~v~~yd~~~-~~w~~~~~~~~~~~ 392 (656)
T 1k3i_A 317 EVYSPSSKTWTS--LPNAKVNPMLTADKQGLYRSDNHAWLFGW-KKGSVFQAGPSTAMNWYYTSG-SGDVKSAGKRQSNR 392 (656)
T ss_dssp EEEETTTTEEEE--ETTSCSGGGCCCCTTGGGTTTCSCCEEEC-GGGCEEECCSSSEEEEEECST-TCEEEEEEECEETT
T ss_pred eEeCCCCCccee--CCCccccccccccccceeecCCceEEEEC-CCCcEEEecCccceeeeecCC-cceeecCCcccccc
Confidence 999998754211 0000000000000 000001112221111 233333333336788899876 33222221111000
Q ss_pred cccccccccCCccceeeEEEc-CCCCEEEEEeCCC-----------cEEEEecCCCceeeee-ecCCCcc-eeEEEECCC
Q 010256 387 PKLCDLYENDSIFDKFECCLS-GDGGRVATGSYSN-----------LFRVFGCSEGSAESTT-LEASKNP-MRRQVQTPS 452 (514)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~~~dg-----------~i~iwd~~~~~~~~~~-~~~~~~~-v~~~~~~~~ 452 (514)
. . .. .... -.++.|. .++++++.|+.++ .|.+||..+....... -..+... -..++..|+
T Consensus 393 ~-~-~~---~~~~-~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~ 466 (656)
T 1k3i_A 393 G-V-AP---DAMC-GNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPD 466 (656)
T ss_dssp E-E-CC---CCBT-CEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTT
T ss_pred c-c-CC---CCCC-CceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCC
Confidence 0 0 00 0000 0134444 3778888887542 6888888776543211 0112222 234567789
Q ss_pred CCceeecCCCC-----------eEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEec
Q 010256 453 RPSRPLGSLSG-----------VVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS 506 (514)
Q Consensus 453 ~~~l~s~s~d~-----------~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~ 506 (514)
+++++.|+.+. .+.+++-... ...................+.||+++++.|+.
T Consensus 467 g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~-~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 467 GSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD-TFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp SCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT-EEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCEEEECCcccCcCcCCCCcccceEEEcCCCC-ceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 99999998652 2334221100 00000000011122234556799999998884
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=0.0031 Score=56.62 Aligned_cols=228 Identities=7% Similarity=-0.037 Sum_probs=123.4
Q ss_pred CeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeecc
Q 010256 136 KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTS 215 (514)
Q Consensus 136 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~ 215 (514)
+.|+..++.+.+...+.... ..+..++|.++++.+ +++-...+.|..++ +..
T Consensus 10 ~~I~~i~~~~~~~~~~~~~~----------------~~p~g~~~d~~~~~l-----------y~~D~~~~~I~~~~-~~g 61 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPNL----------------RNVVALDTEVASNRI-----------YWSDLSQRMICSTQ-LDR 61 (316)
T ss_dssp SSEEEEETTSCCCEEEECSC----------------SSEEEEEEETTTTEE-----------EEEETTTTEEEEEE-C--
T ss_pred CeEEEEECCCcceEehhcCC----------------CceEEEEEEeCCCEE-----------EEEECCCCcEEEEE-CCC
Confidence 46888888776544332211 111267777765544 13334456676665 221
Q ss_pred ccccccccccccccccCccCeEEEEECCCCCEEE-Ee-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecC
Q 010256 216 QETNLVAGCRRIYAHAHDYHINSISNNSDGETFI-SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT 293 (514)
Q Consensus 216 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~ 293 (514)
... ...........-.....+++++.+..|. +- ..+.|.+.+++. .....++ .........++++|.
T Consensus 62 ~~~---~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g-~~~~~~~-------~~~~~~P~~iavdp~ 130 (316)
T 1ijq_A 62 AHG---VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG-VKRKTLF-------RENGSKPRAIVVDPV 130 (316)
T ss_dssp ---------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS-SSEEEEE-------ECTTCCEEEEEEETT
T ss_pred CCC---CcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC-CceEEEE-------ECCCCCcceEEeCCC
Confidence 000 0000111111223457899987655554 44 688999999873 3222221 112346789999997
Q ss_pred CCcEEEEEecC-CeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC--CeEEEEEcc
Q 010256 294 HCNMLAYSSSK-GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDIN 370 (514)
Q Consensus 294 ~~~~l~~~~~d-g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~iwd~~ 370 (514)
++.++++.... +.|..+++..... +.+.. ........++++|++..|+.++. +.|..+|+.
T Consensus 131 ~g~ly~~d~~~~~~I~~~~~dG~~~-----~~~~~-----------~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d 194 (316)
T 1ijq_A 131 HGFMYWTDWGTPAKIKKGGLNGVDI-----YSLVT-----------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 194 (316)
T ss_dssp TTEEEEEECSSSCEEEEEETTSCCE-----EEEEC-----------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCEEEEEccCCCCeEEEEcCCCCCe-----EEEEE-----------CCCCCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence 63555544333 6888888754321 11110 01135788999998888777653 799999987
Q ss_pred CCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCcee
Q 010256 371 MDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
+.....+........ .-..+++. .+.++++-...++|..++..+++..
T Consensus 195 --g~~~~~~~~~~~~~~------------~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~ 242 (316)
T 1ijq_A 195 --GGNRKTILEDEKRLA------------HPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV 242 (316)
T ss_dssp --SCSCEEEEECTTTTS------------SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred --CCceEEEeecCCccC------------CcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcce
Confidence 333333322110000 01267774 4555556667788999998776443
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.17 E-value=0.0016 Score=55.76 Aligned_cols=212 Identities=12% Similarity=0.093 Sum_probs=117.2
Q ss_pred ccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEE
Q 010256 278 MEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL 357 (514)
Q Consensus 278 ~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 357 (514)
+.+....+..++|+|++..++++...++.|...|+. ++.. +.+... + ....-.+++.+++.+++
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~----~~i~l~----------g-~~D~EGIa~~~~g~~~v 85 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLI----RTIPLD----------F-VKDLETIEYIGDNQFVI 85 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEE----EEEECS----------S-CSSEEEEEECSTTEEEE
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEE----EEEecC----------C-CCChHHeEEeCCCEEEE
Confidence 445556799999999874677778888999999987 5542 222211 0 13577888999998777
Q ss_pred EEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCC--Cceee
Q 010256 358 SRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE--GSAES 434 (514)
Q Consensus 358 ~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~--~~~~~ 434 (514)
+... +.+.++++...+. +.......-. +.....+. +...++|+|+++.|.++.......||.+.. .....
T Consensus 86 s~E~~~~l~~~~v~~~~~-i~~~~~~~~~---~~~~~~N~---g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l 158 (255)
T 3qqz_A 86 SDERDYAIYVISLTPNSE-VKILKKIKIP---LQESPTNC---GFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNEL 158 (255)
T ss_dssp EETTTTEEEEEEECTTCC-EEEEEEEECC---CSSCCCSS---CCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCC
T ss_pred EECCCCcEEEEEcCCCCe-eeeeeeeccc---cccccccC---CcceEEEeCCCCEEEEEECcCCceEEEEcccccCCce
Confidence 7543 8999999876332 2222111100 00001111 234899999997777766555555555431 00111
Q ss_pred eeec-------CCCcceeEEEECCCCC-ceeecCCCCeEEEee--CCCCCccccCCcccc---cccceEEEEEcCCCCEE
Q 010256 435 TTLE-------ASKNPMRRQVQTPSRP-SRPLGSLSGVVRRVK--GADNSALDANGNAFD---FSMKLLHLAWHPSENSI 501 (514)
Q Consensus 435 ~~~~-------~~~~~v~~~~~~~~~~-~l~s~s~d~~v~i~~--~~~~~~~~~~~~~~~---~~~~v~~~~~spd~~~l 501 (514)
..+. .+.....++++.|... +++....++.+-.++ |.-.....+.....+ .-.+-..|+|.++|++.
T Consensus 159 ~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ly 238 (255)
T 3qqz_A 159 HISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIY 238 (255)
T ss_dssp EEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEE
T ss_pred eeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEE
Confidence 1111 1234567888887654 444444555554422 221111111111111 11355789999999865
Q ss_pred EEEecCcEEEE
Q 010256 502 ACAASNSLYMY 512 (514)
Q Consensus 502 ~~~~~~~~~i~ 512 (514)
+++-.|-++.|
T Consensus 239 IvsE~n~~y~f 249 (255)
T 3qqz_A 239 IVSEPNRFYRF 249 (255)
T ss_dssp EEETTTEEEEE
T ss_pred EEcCCceEEEE
Confidence 56445555554
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00021 Score=71.53 Aligned_cols=307 Identities=12% Similarity=0.029 Sum_probs=152.1
Q ss_pred cEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCc
Q 010256 127 ALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS 206 (514)
Q Consensus 127 ~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 206 (514)
..+++++.++.|.-+|..+|+..-........... ...+.......+.. .+..+ +.++.++.
T Consensus 67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~v------------~v~~~dg~ 128 (668)
T 1kv9_A 67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKA----RTSCCDAVNRGVAL--WGDKV------------YVGTLDGR 128 (668)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGG----GGCTTCSCCCCCEE--EBTEE------------EEECTTSE
T ss_pred CEEEEECCCCeEEEEECCCChhceEECCCCCcccc----ccccccCCccceEE--ECCEE------------EEEcCCCE
Confidence 36777888899999999999877666544221100 00000000001111 12222 55666777
Q ss_pred EEeceeeccccccccccccccccccCccCeEEEEECC--CCCEEEEe-c------CCeEEEEeccCCCceeeeecc--CC
Q 010256 207 LRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS--DGETFISA-D------DLRINLWNLEISNQSFNIVDV--KP 275 (514)
Q Consensus 207 i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~-~------d~~i~iwd~~~~~~~~~~~~~--~~ 275 (514)
+..+| ..+.+. +..+..........+.-.| .+..++.+ . ++.|..+|.++++...+.... .+
T Consensus 129 l~alD-~~tG~~------~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p 201 (668)
T 1kv9_A 129 LIALD-AKTGKA------IWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDP 201 (668)
T ss_dssp EEEEE-TTTCCE------EEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCT
T ss_pred EEEEE-CCCCCE------eeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCC
Confidence 77766 222111 1111000000000000011 13344444 3 589999999988766554211 11
Q ss_pred Cc-------------cc--------ccCCceEEEEEecCCCcEEEEEecCC-------------------eEEEEEcCCC
Q 010256 276 AN-------------ME--------DLTEVITSAEFHPTHCNMLAYSSSKG-------------------SIRLIDMRQS 315 (514)
Q Consensus 276 ~~-------------~~--------~~~~~i~~v~~~p~~~~~l~~~~~dg-------------------~i~~wd~~~~ 315 (514)
.. .. +.......+++.|+. .+++.++.++ .|..+|.+++
T Consensus 202 ~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG 280 (668)
T 1kv9_A 202 ALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTG 280 (668)
T ss_dssp TSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC
T ss_pred CccccccccccccccCCccceeeeCCCCccccceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCC
Confidence 00 00 111122357888887 6888887766 3999999999
Q ss_pred ccccccccceeccCCCCccceeeccccceeEEEEecCCC---EEEEEeC-CeEEEEEccCCCCceeeeeeccccc-ccc-
Q 010256 316 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGR---HILSRDY-MTLKLWDINMDSGPVATFQVHEHLR-PKL- 389 (514)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~---~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~-~~~- 389 (514)
+..++.... .+... -+. ...+.....+..+|+ .++.++. |.++++|..+ ++.+.......... ..+
T Consensus 281 ~~~W~~~~~--~~~~w----d~~-~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~l~~~~~~~~~w~~~~d 352 (668)
T 1kv9_A 281 KLAWHYQVT--PGDSW----DFT-ATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTN-GKLISAEKFGKVTWAEKVD 352 (668)
T ss_dssp CEEEEEESS--TTCCS----CCC-CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTT-CCEEEEEESSCCCSEEEEC
T ss_pred ceeeEeecC--CCccc----ccc-CCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCC-CCEeccccccccccccccc
Confidence 875432110 00000 000 001222233334665 5666655 9999999997 87775443222000 000
Q ss_pred ----c------cccccCC---------ccceeeEEEcCCCCEEEEE----------------------------------
Q 010256 390 ----C------DLYENDS---------IFDKFECCLSGDGGRVATG---------------------------------- 416 (514)
Q Consensus 390 ----~------~~~~~~~---------~~~v~~~~~s~~~~~l~s~---------------------------------- 416 (514)
. ..|.... ...-..++++|+..+++..
T Consensus 353 ~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p 432 (668)
T 1kv9_A 353 LATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVP 432 (668)
T ss_dssp TTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCC
T ss_pred cccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCC
Confidence 0 0000000 0000137888887766542
Q ss_pred --eCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEee
Q 010256 417 --SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVK 469 (514)
Q Consensus 417 --~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~ 469 (514)
..+|.|+-||+.+++.. -..+.. .+.....+...+.+++.++.|+.++.++
T Consensus 433 ~~~~~g~l~A~D~~tG~~~-W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d 485 (668)
T 1kv9_A 433 AAVVSGALLAWDPVKQKAA-WKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYS 485 (668)
T ss_dssp GGGCEEEEEEEETTTTEEE-EEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred CCCccceEEEEeCCCCcEE-EEccCC-CCCcCceeEeCCCEEEEECCcccchhhh
Confidence 12478999999988543 233222 2233334445677888899999999943
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00087 Score=67.16 Aligned_cols=78 Identities=13% Similarity=0.064 Sum_probs=49.0
Q ss_pred EEEEcC-CCCeEEEecCCC-----------eEEEEEecCCcccCCcccccccccccccCCccceeeeee-ccCCCccccc
Q 010256 40 AIEFDK-SGDHLATGDRGG-----------RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF-QSHEPEFDYL 106 (514)
Q Consensus 40 ~~~~s~-~g~~l~tg~~dg-----------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~ 106 (514)
++++.+ +|++++.|+.+. .+.+||..+++.. .+..+ ..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~---------------------~~~~~~~~~~------ 242 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS---------------------DRTVTVTKHD------ 242 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBC---------------------CCEEEECSCC------
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEE---------------------eCcccCCCCC------
Confidence 566677 888888887542 5788888776643 00111 1111
Q ss_pred cccccccceeEEEEeeCCCCcEEEEee-CCCeEEEEEcCccEEEEEe
Q 010256 107 KSLEIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQEKKVKKVF 152 (514)
Q Consensus 107 ~~~~~~~~v~~i~~~~~~~~~~l~s~~-~d~~i~iw~~~~~~~~~~~ 152 (514)
....++++ ..++.+++.|+ .+..+.+||..+++.....
T Consensus 243 ------~~~~~~~~--~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~ 281 (656)
T 1k3i_A 243 ------MFCPGISM--DGNGQIVVTGGNDAKKTSLYDSSSDSWIPGP 281 (656)
T ss_dssp ------CSSCEEEE--CTTSCEEEECSSSTTCEEEEEGGGTEEEECC
T ss_pred ------CccccccC--CCCCCEEEeCCCCCCceEEecCcCCceeECC
Confidence 12334555 45677888887 4568999999988766553
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.0023 Score=65.19 Aligned_cols=31 Identities=10% Similarity=-0.011 Sum_probs=24.8
Q ss_pred ceEEEEEc-CCCCeEEEecC-C----CeEEEEEecCC
Q 010256 37 IISAIEFD-KSGDHLATGDR-G----GRVVLFERTDT 67 (514)
Q Consensus 37 ~V~~~~~s-~~g~~l~tg~~-d----g~i~iw~~~~~ 67 (514)
.+...+|| |||++||.+.. + ..|+++|+.++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g 211 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDP 211 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCC
Confidence 67889999 99999986543 2 35999999877
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=0.0018 Score=63.38 Aligned_cols=170 Identities=14% Similarity=0.071 Sum_probs=88.6
Q ss_pred EEEEecCCCcEEEEEecC----------------CeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEe
Q 010256 287 SAEFHPTHCNMLAYSSSK----------------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (514)
Q Consensus 287 ~v~~~p~~~~~l~~~~~d----------------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 350 (514)
.+++.+.. ..++.++.+ +.|..+|.++++..++.... .+... -+.....++. +...
T Consensus 239 ~~a~d~~~-g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~--~~d~~----d~~~~~~p~l-~~~~ 310 (571)
T 2ad6_A 239 WYAYDPKL-NLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKT--PHDEW----DFAGVNQMVL-TDQP 310 (571)
T ss_dssp CCEEETTT-TEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESS--TTCSS----CCCCCCCCEE-EEEE
T ss_pred eEEEcCCC-CeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCC--CCccc----ccccCCCCEE-Eecc
Confidence 35677765 466655532 35899999998875431110 00000 0000112222 2333
Q ss_pred cCCC---EEEEEeC-CeEEEEEccCCCCceeeeeecccc-----------ccc---------------cccccccCCccc
Q 010256 351 RNGR---HILSRDY-MTLKLWDINMDSGPVATFQVHEHL-----------RPK---------------LCDLYENDSIFD 400 (514)
Q Consensus 351 ~~g~---~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~-----------~~~---------------~~~~~~~~~~~~ 400 (514)
++|+ .++.++. |.+.++|..+ ++.+......... ... ++....... .
T Consensus 311 ~~G~~~~~v~~~~~~G~l~~lD~~t-G~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~--~ 387 (571)
T 2ad6_A 311 VNGKMTPLLSHIDRNGILYTLNREN-GNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFH--N 387 (571)
T ss_dssp ETTEEEEEEEEECTTSEEEEEETTT-CCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSS--C
T ss_pred cCCcEEEEEEEeCCCcEEEEEECCC-CCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCcccc--C
Confidence 5774 4555654 8999999987 7776655432200 000 000000000 0
Q ss_pred eeeEEEcCCCCEEEEEe-------------------------------------CCCcEEEEecCCCceeeeeecCCCcc
Q 010256 401 KFECCLSGDGGRVATGS-------------------------------------YSNLFRVFGCSEGSAESTTLEASKNP 443 (514)
Q Consensus 401 v~~~~~s~~~~~l~s~~-------------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~ 443 (514)
-..++++|+..+++... .+|.|+.||+.+++.+ -..+.. .+
T Consensus 388 w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~-W~~~~~-~~ 465 (571)
T 2ad6_A 388 QGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAK-WTKWEK-FA 465 (571)
T ss_dssp SCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEE-EEEEES-SC
T ss_pred CCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEE-EEecCC-CC
Confidence 01578888887776653 3478999999988543 333221 12
Q ss_pred eeEEEECCCCCceeecCCCCeEEEee
Q 010256 444 MRRQVQTPSRPSRPLGSLSGVVRRVK 469 (514)
Q Consensus 444 v~~~~~~~~~~~l~s~s~d~~v~i~~ 469 (514)
+....+...+..+..++.|+.++.++
T Consensus 466 ~~~~~~~t~gg~v~~g~~dg~l~a~D 491 (571)
T 2ad6_A 466 AWGGTLYTKGGLVWYATLDGYLKALD 491 (571)
T ss_dssp CCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred ccceeEEECCCEEEEEcCCCeEEEEE
Confidence 22222233456677788999999844
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0087 Score=55.67 Aligned_cols=250 Identities=8% Similarity=-0.029 Sum_probs=132.3
Q ss_pred EEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcE
Q 010256 128 LYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSL 207 (514)
Q Consensus 128 ~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 207 (514)
+|+.+. ...|+..++.......+.... . .+..++|.+.++.+ +++-...+.|
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~---------~-------~~~~l~~d~~~~~l-----------ywsD~~~~~I 136 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIPNL---------R-------NVVALDTEVASNRI-----------YWSDLSQRMI 136 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEECSC---------S-------CEEEEEEETTTTEE-----------EEEETTTTEE
T ss_pred eeEEec-cceeEEEccCCcceeEecccc---------C-------cceEEeeeeccCce-----------EEEecCCCeE
Confidence 444443 467888888766543332211 1 11267787765544 1333344556
Q ss_pred EeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCce
Q 010256 208 RLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVI 285 (514)
Q Consensus 208 ~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 285 (514)
..++ +..... .................+++++.+..|..+ ..+.|.+.+++... ...++ .......
T Consensus 137 ~~~~-~~g~~~---~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~-~~~l~-------~~~~~~P 204 (400)
T 3p5b_L 137 CSTQ-LDRAHG---VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLF-------RENGSKP 204 (400)
T ss_dssp EEEE-C---------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCS-EEEEE-------ECSSCCE
T ss_pred EEEE-cccCCC---CCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCc-eEEEE-------eCCCCCc
Confidence 6555 221100 000111112233457789999855555544 67899999987332 22221 1223457
Q ss_pred EEEEEecCCCcEEEEEec-CCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC--C
Q 010256 286 TSAEFHPTHCNMLAYSSS-KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--M 362 (514)
Q Consensus 286 ~~v~~~p~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~ 362 (514)
..|+++|.++.++.+-.. .+.|...++..... ..+- .........|++++++..|+.++. +
T Consensus 205 ~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~-----~~~~-----------~~~l~~P~glavd~~~~~lY~aD~~~~ 268 (400)
T 3p5b_L 205 RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-----YSLV-----------TENIQWPNGITLDLLSGRLYWVDSKLH 268 (400)
T ss_dssp EEEEEETTTTEEEEEECSSSCCEEEEETTSCSC-----EEEE-----------CSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred ceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc-----EEEE-----------ECCCCceEEEEEEeCCCEEEEEECCCC
Confidence 899999976344444322 36888888865332 1111 111135788999998888877653 7
Q ss_pred eEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCc
Q 010256 363 TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKN 442 (514)
Q Consensus 363 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 442 (514)
.|..+|+. +.....+........ .-..+++. .+.++.+-...+.|..+|..+++.. .++.....
T Consensus 269 ~I~~~d~d--G~~~~~~~~~~~~l~------------~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~-~~i~~~~~ 332 (400)
T 3p5b_L 269 SISSIDVN--GGNRKTILEDEKRLA------------HPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV-NLLAENLL 332 (400)
T ss_dssp EEEEEETT--SCCCEEEEECSSTTS------------SEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCC-EEEECSCS
T ss_pred EEEEEeCC--CCccEEEEeCCCCCC------------CCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCce-EEEecCCC
Confidence 89999986 333333322110000 01256663 3445556666788999997777544 34443333
Q ss_pred ceeEEEE
Q 010256 443 PMRRQVQ 449 (514)
Q Consensus 443 ~v~~~~~ 449 (514)
....+..
T Consensus 333 ~p~~i~v 339 (400)
T 3p5b_L 333 SPEDMVL 339 (400)
T ss_dssp CEEEEEE
T ss_pred CCceEEE
Confidence 3344433
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0034 Score=59.02 Aligned_cols=268 Identities=9% Similarity=0.021 Sum_probs=133.7
Q ss_pred ceeEEEEeeC-CCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 114 KINKIRWCQS-ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 114 ~v~~i~~~~~-~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
.-..|+|.|. .++ .|+.+...+.|+.++..+++........ ..+..++++++|+.+
T Consensus 140 ~P~gvavd~~s~~g-~Lyv~D~~~~I~~id~~~g~v~~~~~~~----------------~~P~giavd~dG~ly------ 196 (433)
T 4hw6_A 140 NIWRMMFDPNSNYD-DLYWVGQRDAFRHVDFVNQYVDIKTTNI----------------GQCADVNFTLNGDMV------ 196 (433)
T ss_dssp CCCEEEECTTTTTC-EEEEECBTSCEEEEETTTTEEEEECCCC----------------SCEEEEEECTTCCEE------
T ss_pred CCceEEEccccCCC-EEEEEeCCCCEEEEECCCCEEEEeecCC----------------CCccEEEECCCCCEE------
Confidence 3568888542 234 4555443389999999888766553311 122378899999833
Q ss_pred CCCCcccCCCCC--CcEEeceeeccccccccccccccccccCccCeEEEEECC-CCCEEEEe-cCCeEEEEeccCCCcee
Q 010256 193 ASNDSSFPPGGV--SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSF 268 (514)
Q Consensus 193 ~~~~~~~~~~~~--~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~ 268 (514)
++.... ..-.++. +. ........ .. ...-.....++++| ++.++++- .++.|+.+|..++....
T Consensus 197 ------Vad~~~~~~~~gv~~-~~-~~~~~~~~--~~--~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~ 264 (433)
T 4hw6_A 197 ------VVDDQSSDTNTGIYL-FT-RASGFTER--LS--LCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE 264 (433)
T ss_dssp ------EEECCSCTTSEEEEE-EC-GGGTTCCE--EE--EEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE
T ss_pred ------EEcCCCCcccceEEE-EE-CCCCeecc--cc--ccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE
Confidence 221111 0111111 10 01100000 00 01123456788999 67766666 78899999987544312
Q ss_pred eeeccCCCcccccCCceEEEEEecCCCc-EEEEEecCCeEEEEEcCC--Cccccccccceecc-CCCCccc--eeecccc
Q 010256 269 NIVDVKPANMEDLTEVITSAEFHPTHCN-MLAYSSSKGSIRLIDMRQ--SALCDTHSKLFEEQ-EAPGTRS--FFTEIIA 342 (514)
Q Consensus 269 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~-~l~~~~~dg~i~~wd~~~--~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~ 342 (514)
.+... +.......++|+|++ + ++++-...+.|+.+++.. +... ....+.+. ....... .....-.
T Consensus 265 ~~~~~------~~~~~~~~ia~dpdG-~~LYvad~~~~~I~~~~~d~~~~~~~--~~~~~ag~~g~~g~~dg~~~~a~~~ 335 (433)
T 4hw6_A 265 EEVMM------DTKGSNFHIVWHPTG-DWAYIIYNGKHCIYRVDYNRETGKLA--VPYIVCGQHSSPGWVDGMGTGARLW 335 (433)
T ss_dssp EEEEC------SCCSSCEEEEECTTS-SEEEEEETTTTEEEEEEBCTTTCCBC--CCEEEEECTTCCCCBCEEGGGSBCS
T ss_pred EEecc------CCCCCcccEEEeCCC-CEEEEEeCCCCEEEEEeCCCCCcccC--cEEEEEecCCCCccCCCcccceEEc
Confidence 22111 112223479999999 6 555555678999988753 2211 01112111 0000000 0001113
Q ss_pred ceeEEEE---------ecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccc--ccccccc-ccccCCccceeeEEEc-C
Q 010256 343 SISDIKF---------ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEH--LRPKLCD-LYENDSIFDKFECCLS-G 408 (514)
Q Consensus 343 ~i~~~~~---------s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~v~~~~~s-~ 408 (514)
....+++ .++|.+.++-.. +.|+.++.. + .+.++.+... ....... ......+..-..++++ +
T Consensus 336 ~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~--G-~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~ 412 (433)
T 4hw6_A 336 GPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE--G-RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMK 412 (433)
T ss_dssp SEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT--S-EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETT
T ss_pred CCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC--C-CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECC
Confidence 4677899 667766666444 788888742 4 3344433211 0000000 0000111122378999 6
Q ss_pred CCCEEEEEeCCCcEEEEecC
Q 010256 409 DGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 409 ~~~~l~s~~~dg~i~iwd~~ 428 (514)
+|.++++=...++|+.++++
T Consensus 413 ~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 413 RKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp TTEEEEEEGGGTEEEEEEEC
T ss_pred CCEEEEEeCCCCEEEEEecC
Confidence 67666665667788887764
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0045 Score=60.65 Aligned_cols=85 Identities=11% Similarity=0.063 Sum_probs=47.5
Q ss_pred EEEEecCCCcEEEEEecC----------------CeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEe
Q 010256 287 SAEFHPTHCNMLAYSSSK----------------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (514)
Q Consensus 287 ~v~~~p~~~~~l~~~~~d----------------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 350 (514)
.+++.+.. .+++.++.+ +.|.-+|.++++..+..... .+.. --+.....++. +...
T Consensus 245 ~~a~d~~~-g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~--~~d~----wd~d~~~~p~l-~d~~ 316 (599)
T 1w6s_A 245 WYAYDPGT-NLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKT--PHDE----WDYAGVNVMML-SEQK 316 (599)
T ss_dssp CCEEETTT-TEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESS--TTCS----SCCCCCCCCEE-EEEE
T ss_pred ceeEeCCC-CEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecC--CCcc----ccccCCCccEE-Eecc
Confidence 45667776 577777655 37899999999875431110 0000 00000111222 2222
Q ss_pred -cCC---CEEEEEeC-CeEEEEEccCCCCceeeee
Q 010256 351 -RNG---RHILSRDY-MTLKLWDINMDSGPVATFQ 380 (514)
Q Consensus 351 -~~g---~~l~~~~~-~~i~iwd~~~~~~~~~~~~ 380 (514)
.+| +.++.++. |.+.++|..+ ++++....
T Consensus 317 ~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~lw~~~ 350 (599)
T 1w6s_A 317 DKDGKARKLLTHPDRNGIVYTLDRTD-GALVSANK 350 (599)
T ss_dssp CTTSCEEEEEEEECTTSEEEEEETTT-CCEEEEEE
T ss_pred ccCCcEEEEEEEECCCcEEEEEECCC-CCEeeccc
Confidence 467 45555654 9999999987 77766554
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0047 Score=55.82 Aligned_cols=197 Identities=11% Similarity=0.053 Sum_probs=109.9
Q ss_pred CeEEEEECCCCCEEEEe-------------cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEec--CCC-cEE
Q 010256 235 HINSISNNSDGETFISA-------------DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP--THC-NML 298 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~-------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p--~~~-~~l 298 (514)
...++...|+|..++++ .+|.|.++|.++.......+......+....-....+.+.+ ++. +++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34567778888777765 58999999987432222211111000122334677888766 342 244
Q ss_pred EEEec--CCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe----C-----------
Q 010256 299 AYSSS--KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----Y----------- 361 (514)
Q Consensus 299 ~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~----~----------- 361 (514)
++-.. +..|.+|++.........+..++... ....+++.+.++|.+.++.. +
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~-----------~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~ 199 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKL-----------LPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLG 199 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTT-----------CSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCC-----------CCCCceEEEeCCCCEEecCCcEeCCcccccchhhcc
Confidence 44444 56788888866433222233333321 14688999999999888753 1
Q ss_pred -CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe-CCCcEEEEecCCCceee--eee
Q 010256 362 -MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGCSEGSAES--TTL 437 (514)
Q Consensus 362 -~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~--~~~ 437 (514)
..=.+|.+.. ++.......-.. -..++|+||++.|..+. ..++|+.|++.....+. ..+
T Consensus 200 ~~~g~vyr~d~-~~~~~~~~~l~~----------------pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~ 262 (355)
T 3sre_A 200 LAWSFVTYYSP-NDVRVVAEGFDF----------------ANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL 262 (355)
T ss_dssp CCCEEEEEECT-TCCEEEEEEESS----------------EEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE
T ss_pred CCccEEEEEEC-CeEEEeecCCcc----------------cCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE
Confidence 1233444442 221111111111 12799999998777654 56899999986432221 233
Q ss_pred cCCCcceeEEEECC-CCCceeecC
Q 010256 438 EASKNPMRRQVQTP-SRPSRPLGS 460 (514)
Q Consensus 438 ~~~~~~v~~~~~~~-~~~~l~s~s 460 (514)
......-.+++.+ +|.+.+++.
T Consensus 263 -~~~g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 263 -SFDTLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp -ECSSEEEEEEECTTTCCEEEEEE
T ss_pred -eCCCCCceEEEeCCCCcEEEEec
Confidence 2234556788888 588777554
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0049 Score=57.97 Aligned_cols=159 Identities=9% Similarity=0.092 Sum_probs=89.6
Q ss_pred ceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCC
Q 010256 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (514)
Q Consensus 114 ~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (514)
....|++.|. ++..|+++...+.|+.+|+..+.+..+.... ..+..++++++|+.+.
T Consensus 138 ~P~~lavdp~-~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~----------------~~P~~ia~d~~G~~ly------ 194 (430)
T 3tc9_A 138 GAVWLSFDPK-NHNHLYLVGEQHPTRLIDFEKEYVSTVYSGL----------------SKVRTICWTHEADSMI------ 194 (430)
T ss_dssp CCCEEEEETT-EEEEEEEEEBTEEEEEEETTTTEEEEEECCC----------------SCEEEEEECTTSSEEE------
T ss_pred CCCEEEECCC-CCCeEEEEeCCCcEEEEECCCCEEEEEecCC----------------CCcceEEEeCCCCEEE------
Confidence 4567888531 2335666655588999999887765543311 1222788999998551
Q ss_pred CCCcccCCCCCCcE--EeceeeccccccccccccccccccCccCeEEEEECC-CCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 194 SNDSSFPPGGVSSL--RLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNS-DGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 194 ~~~~~~~~~~~~~i--~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
++....+.+ .++-+.. +..... ...+ . .......++++| ++.++++- .++.|..++...... ..
T Consensus 195 -----vad~~~~~~~~~v~~~~~--~g~~~~--~~~l-~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~-~~ 262 (430)
T 3tc9_A 195 -----ITNDQNNNDRPNNYILTR--ESGFKV--ITEL-T-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET-TP 262 (430)
T ss_dssp -----EEECCSCTTSEEEEEEEG--GGTSCS--EEEE-E-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE-EE
T ss_pred -----EEeCCCCcccceEEEEeC--CCceee--eeee-c-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE-EE
Confidence 222211111 1111011 111100 0011 1 123456788999 67777666 788999999874432 11
Q ss_pred eeccCCCcccccCCceEEEEEecCCCc-EEEEEecCCeEEEEEcCC
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCN-MLAYSSSKGSIRLIDMRQ 314 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~-~l~~~~~dg~i~~wd~~~ 314 (514)
+. ... .......++|+|++ + ++++-...+.|..++...
T Consensus 263 ~~-----~~~-~~~~P~gia~~pdG-~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 263 LF-----TIQ-DSGWEFHIQFHPSG-NYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp EE-----ECS-SSSCCEEEEECTTS-SEEEEEETTTTEEEEEEEET
T ss_pred EE-----EcC-CCCcceeEEEcCCC-CEEEEEECCCCEEEEEeCCc
Confidence 11 111 12456899999999 6 555556688999988764
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.011 Score=55.75 Aligned_cols=224 Identities=12% Similarity=0.010 Sum_probs=109.2
Q ss_pred cCeEEEEE-------CCCCCEEEEe-cCC-------eEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEE
Q 010256 234 YHINSISN-------NSDGETFISA-DDL-------RINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNML 298 (514)
Q Consensus 234 ~~v~~~~~-------~~~~~~l~s~-~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l 298 (514)
.....++| +++++.|+.+ ..+ .|.+++...........+. ..+... .....++++|++..++
T Consensus 186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~--~~v~~~-~~p~giavdp~~g~LY 262 (496)
T 3kya_A 186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDI--QLIAAY-KQCNGATIHPINGELY 262 (496)
T ss_dssp SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCE--EEEEEE-SCCCCEEECTTTCCEE
T ss_pred CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccc--eeeccC-CCceEEEEcCCCCeEE
Confidence 34678889 9999866665 322 2556654321111100000 011111 2345778899654777
Q ss_pred EEEecCCeEEEEEcC-------CCccccccccceeccCCCCcccee-eccccceeEEEEecCCCEEEEEe-C-CeEEEEE
Q 010256 299 AYSSSKGSIRLIDMR-------QSALCDTHSKLFEEQEAPGTRSFF-TEIIASISDIKFARNGRHILSRD-Y-MTLKLWD 368 (514)
Q Consensus 299 ~~~~~dg~i~~wd~~-------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~~g~~l~~~~-~-~~i~iwd 368 (514)
++-..++.|..+|+. ++... .+....... .....+ .+.......++|+|+|++|+.++ . ..|+.++
T Consensus 263 vtd~~~g~V~r~d~~~~~~~~~tg~~~-tp~~~~~~g---~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid 338 (496)
T 3kya_A 263 FNSYEKGQVFRLDLVDYFKTIKNGGSW-DPIVKNNPN---TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSD 338 (496)
T ss_dssp EEETTTTEEEEECHHHHHHHHHTTCCC-CCBGGGCTT---TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEECCCCEEEEEecccccccccCceee-ccccccccc---ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEe
Confidence 777788899999997 44320 000000000 000000 01113467899999999766654 3 8888877
Q ss_pred ccCCCCce---eeeeeccccccccccccccCCcccee-eEEEc-------CCCCEEEEEeCCCcEEEEecCCCceeeeee
Q 010256 369 INMDSGPV---ATFQVHEHLRPKLCDLYENDSIFDKF-ECCLS-------GDGGRVATGSYSNLFRVFGCSEGSAESTTL 437 (514)
Q Consensus 369 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s-------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 437 (514)
.......+ .++-+..+.............+..-. .++.. ++|.++++=....+|+.++. ++ .. .++
T Consensus 339 ~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G-~v-~Ti 415 (496)
T 3kya_A 339 YDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG-IV-STY 415 (496)
T ss_dssp EETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TC-BE-EEE
T ss_pred cCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CC-CE-EEE
Confidence 65312121 23322211000000000000111111 23443 45666666667788999984 44 22 233
Q ss_pred cCC------------------------CcceeEEEECCC-CCceeecCCCCeEEE
Q 010256 438 EAS------------------------KNPMRRQVQTPS-RPSRPLGSLSGVVRR 467 (514)
Q Consensus 438 ~~~------------------------~~~v~~~~~~~~-~~~l~s~s~d~~v~i 467 (514)
-+. ......+++.++ +.++++=+.+..||.
T Consensus 416 aG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrk 470 (496)
T 3kya_A 416 AGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRT 470 (496)
T ss_dssp EESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred ecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEE
Confidence 221 123456777775 666666566666665
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.013 Score=52.89 Aligned_cols=231 Identities=10% Similarity=0.073 Sum_probs=121.4
Q ss_pred cCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcC
Q 010256 234 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~ 313 (514)
..+.++.+++ +..++.+..+.|.. ...+......+.. ...+...+..+.+.+++ .+++.+ .++.| |-..
T Consensus 80 ~~~~~i~~~~-~~~~~~g~~g~i~~--S~DgG~tW~~~~~----~~~~~~~~~~i~~~~~~-~~~~~~-~~g~v--~~S~ 148 (327)
T 2xbg_A 80 YRFNSVSFQG-NEGWIVGEPPIMLH--TTDGGQSWSQIPL----DPKLPGSPRLIKALGNG-SAEMIT-NVGAI--YRTK 148 (327)
T ss_dssp CEEEEEEEET-TEEEEEEETTEEEE--ESSTTSSCEECCC----CTTCSSCEEEEEEEETT-EEEEEE-TTCCE--EEES
T ss_pred ccEEEEEecC-CeEEEEECCCeEEE--ECCCCCCceECcc----ccCCCCCeEEEEEECCC-CEEEEe-CCccE--EEEc
Confidence 4678888876 55556566675543 2323333322110 01123457788887776 566655 45543 2222
Q ss_pred C-CccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEE-EEccCCCCceeeeeecccccccccc
Q 010256 314 Q-SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKL-WDINMDSGPVATFQVHEHLRPKLCD 391 (514)
Q Consensus 314 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~ 391 (514)
. ++. +.... ......+..+++.|++++++.+..+.+.. .|-. +..-..+.....
T Consensus 149 DgG~t-------W~~~~--------~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g--G~tW~~~~~~~~------- 204 (327)
T 2xbg_A 149 DSGKN-------WQALV--------QEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG--QTAWEPHNRTTS------- 204 (327)
T ss_dssp STTSS-------EEEEE--------CSCCCCEEEEEECTTSCEEEEETTSSEEEEECTT--CSSCEEEECCSS-------
T ss_pred CCCCC-------CEEee--------cCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC--CCceeECCCCCC-------
Confidence 2 221 11110 11124688899999999988887655433 3321 222222211110
Q ss_pred ccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeec-C---CCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 392 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE-A---SKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 392 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~---~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
..+..+++.+++++++. +.+|.+++.+...++. -..+. . +...+..+.+.+++.+++++. ++.+..
T Consensus 205 -------~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~t-W~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~~ 274 (327)
T 2xbg_A 205 -------RRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSEN-WGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGALLC 274 (327)
T ss_dssp -------SCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEE-ECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCEEE
T ss_pred -------CccceeEECCCCCEEEE-eCCceEEEecCCCCCe-eEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeEEE
Confidence 11337888999886654 5578877764221211 11111 1 223577888988887777665 676655
Q ss_pred -eeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecCcEEE
Q 010256 468 -VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYM 511 (514)
Q Consensus 468 -~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~i 511 (514)
.++...+.. +. ........+.++.|.++++.++++.+..++-
T Consensus 275 S~DgG~tW~~-~~-~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~ 317 (327)
T 2xbg_A 275 SQDGGQTWQQ-DV-DVKKVPSNFYKILFFSPDQGFILGQKGILLR 317 (327)
T ss_dssp ESSTTSSCEE-CG-GGTTSSSCCCEEEEEETTEEEEECSTTEEEE
T ss_pred eCCCCcccEE-cC-ccCCCCCCeEEEEEECCCceEEEcCCceEEE
Confidence 454444421 11 0011235678899987777666665554443
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.88 E-value=0.042 Score=58.31 Aligned_cols=33 Identities=6% Similarity=-0.006 Sum_probs=27.4
Q ss_pred ccceEEEEEcCC------CCeEEEecC-CCeEEEEEecCC
Q 010256 35 VDIISAIEFDKS------GDHLATGDR-GGRVVLFERTDT 67 (514)
Q Consensus 35 ~~~V~~~~~s~~------g~~l~tg~~-dg~i~iw~~~~~ 67 (514)
.+.|+|+++.|. ++++|.|.. |++|+|+++.+.
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l 592 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSF 592 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTC
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCC
Confidence 467999999873 369999997 999999998743
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.015 Score=58.94 Aligned_cols=160 Identities=11% Similarity=-0.003 Sum_probs=94.9
Q ss_pred cCeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC-CeEEEE
Q 010256 234 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-GSIRLI 310 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d-g~i~~w 310 (514)
.....|++++.+..|..+ ..+.|.+.++... ....++ .........|+++|.++.++++-... +.|...
T Consensus 471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~-~~~~l~-------~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~ 542 (791)
T 3m0c_C 471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV-KRKTLF-------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 542 (791)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSS-SEEEEE-------ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred CCcceeeeeecCCcEEEEecCCCeEEEEeCCCC-eEEEEE-------eCCCCCcceEEEecCCCCEEEecCCCCCeEEEE
Confidence 456789999887666655 6889999998733 222221 12234578999999863444443333 788888
Q ss_pred EcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC--CeEEEEEccCCCCceeeeeec-ccccc
Q 010256 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVH-EHLRP 387 (514)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~~~~~~~~~~~~-~~~~~ 387 (514)
++..... ..+- .........|++++.+..|+.++. ..|...++. +.....+... ....
T Consensus 543 ~~dG~~~-----~~lv-----------~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d--G~~~~~v~~~~~~l~- 603 (791)
T 3m0c_C 543 GLNGVDI-----YSLV-----------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKRLA- 603 (791)
T ss_dssp ETTSCCE-----EEEE-----------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEEECTTTTS-
T ss_pred ecCCCce-----EEEE-----------eCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecC--CCceEEEecCCCccC-
Confidence 8865432 1111 111146788999988777777643 788888886 4443333221 1110
Q ss_pred ccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCcee
Q 010256 388 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 388 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
.-+.+++.. ++++++-...+.|...+..+++..
T Consensus 604 ------------~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 604 ------------HPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDV 636 (791)
T ss_dssp ------------SEEEEEEET-TEEEEEETTTTEEEEEETTTCCCC
T ss_pred ------------CCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcce
Confidence 012566532 334444456678888887777444
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.017 Score=52.70 Aligned_cols=113 Identities=14% Similarity=0.106 Sum_probs=63.0
Q ss_pred cCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecC---CCcEEEEEecC-----C
Q 010256 234 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSSSK-----G 305 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~---~~~~l~~~~~d-----g 305 (514)
.....++|.|+|+++++-.++.|++++ . +. ...+.... ...........++++|+ ++.++++-... +
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~-~-g~-~~~~~~~~--v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR-E-GR-LSTYAELS--VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE-T-TE-EEEEEECC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE-C-CC-ccEeecce--EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 346799999999977766669999998 3 32 11111111 12223456899999998 42455544433 6
Q ss_pred eEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEE
Q 010256 306 SIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 358 (514)
Q Consensus 306 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 358 (514)
.|..|+...+... .....+...... .-..| ....++|.|||.+.++
T Consensus 106 ~v~r~~~~~~~~~-~~~~l~~~~p~~----~~~~h--~~~~l~~~pdG~Lyv~ 151 (352)
T 2ism_A 106 QVVRLRHLGERGV-LDRVVLDGIPAR----PHGLH--SGGRIAFGPDGMLYVT 151 (352)
T ss_dssp EEEEEEECSSCEE-EEEEEEEEECCC----TTCCC--CCCCEEECTTSCEEEE
T ss_pred EEEEEEeCCCCcC-ceEEEEEeCCCC----CCCCc--CCceEEECCCCCEEEE
Confidence 7778887643211 001111100000 00112 2367999999987776
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.016 Score=51.26 Aligned_cols=214 Identities=9% Similarity=0.028 Sum_probs=115.5
Q ss_pred eEEEEECCCCCE-EEEe-cCCeEEEEeccCCCceeeeeccCCCccc--c-cCCceEEEEE---ecCCCcEEEEEec----
Q 010256 236 INSISNNSDGET-FISA-DDLRINLWNLEISNQSFNIVDVKPANME--D-LTEVITSAEF---HPTHCNMLAYSSS---- 303 (514)
Q Consensus 236 v~~~~~~~~~~~-l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~-~~~~i~~v~~---~p~~~~~l~~~~~---- 303 (514)
..++.|++.... +++. ..++|..||...+. ...+ .+. .+. + ....+..+.| .|++ +++++...
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~-~~~~-~~~--~~s~~g~~~~~~sGl~~~~~D~~g-rL~vv~~~~~af 89 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQS-HFNV-VID--GASSNGDGEQQMSGLSLLTHDNSK-RLFAVMKNAKSF 89 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCC-EEEE-CCT--TTCCSSCCSEEEEEEEESSSSSCC-EEEEEEEETTTT
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCe-EEEE-ecC--CccccCCCcceeeEEEEeccCCCC-cEEEEEcccccc
Confidence 446889875444 4455 79999999987332 2222 111 111 1 1124579999 6887 77775442
Q ss_pred ---------CCeEEEEEcC---CCccccccccceeccCCCCccceeec-cccceeEEEEecCCCEEEEEeCCeEEEEEcc
Q 010256 304 ---------KGSIRLIDMR---QSALCDTHSKLFEEQEAPGTRSFFTE-IIASISDIKFARNGRHILSRDYMTLKLWDIN 370 (514)
Q Consensus 304 ---------dg~i~~wd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~ 370 (514)
+..+..||+. +++... ...............+ -......++..++|+..++++.+.=.||.+.
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~----~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~ 165 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVW----SVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVS 165 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSE----EEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEEC
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEE----EecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEe
Confidence 6789999998 665431 1111000000000000 0124789999999998888654312255554
Q ss_pred CCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeec--CC---Cccee
Q 010256 371 MDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLE--AS---KNPMR 445 (514)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~---~~~v~ 445 (514)
..++.+..+....... ........++++|+|+.|++....|.+..+|+.........+. +. .....
T Consensus 166 pdG~~~~~~~~~~~~~---------~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~d 236 (334)
T 2p9w_A 166 ADGKTVSTFAWESGNG---------GQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTE 236 (334)
T ss_dssp TTSCCEEEEEECCCCS---------SSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEE
T ss_pred CCCCEEeeeeecCCCc---------ccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcc
Confidence 4355444332222110 0011123899999999888887799999999884322001122 21 11223
Q ss_pred EE-EECCCCCc-eeecCCCCeEEE
Q 010256 446 RQ-VQTPSRPS-RPLGSLSGVVRR 467 (514)
Q Consensus 446 ~~-~~~~~~~~-l~s~s~d~~v~i 467 (514)
.+ ....+++. |++.+..+.+.+
T Consensus 237 gilp~~~~G~vllV~~~~~~~~~l 260 (334)
T 2p9w_A 237 KIVTVPVGNESVLVGARAPYAISF 260 (334)
T ss_dssp EEEEEEETTEEEEEEEETTEEEEE
T ss_pred cccccccCCEEEEEEcCCCCEEEE
Confidence 32 33456776 555556666555
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.017 Score=53.40 Aligned_cols=192 Identities=9% Similarity=-0.062 Sum_probs=112.7
Q ss_pred cCeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEE
Q 010256 234 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd 311 (514)
..+..++|++.+..|..+ ..+.|..+++..... ..++ .........+++.+.+++++++-...+.|.+.+
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~~~-------~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~ 187 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EEVV-------STGLESPGGLAVDWVHDKLYWTDSGTSRIEVAN 187 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE-EEEE-------CSSCSCCCCEEEETTTTEEEEEETTTTEEEECB
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc-EEEE-------eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEe
Confidence 346789999866655554 688999999874432 1211 111234567888886646666666678888888
Q ss_pred cCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe--C-CeEEEEEccCCCCceeeeeeccccccc
Q 010256 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y-MTLKLWDINMDSGPVATFQVHEHLRPK 388 (514)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~-~~i~iwd~~~~~~~~~~~~~~~~~~~~ 388 (514)
+..... ..+. .........++++|.+..|+..+ . +.|..+++. +.....+......
T Consensus 188 ~dg~~~-----~~l~-----------~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~~~~~~~--- 246 (386)
T 3v65_B 188 LDGAHR-----KVLL-----------WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--GSGRRIIADTHLF--- 246 (386)
T ss_dssp TTSCSC-----EEEE-----------CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEEEECSSCS---
T ss_pred CCCCce-----EEee-----------cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC--CCCcEEEEECCCC---
Confidence 764321 1111 11113578899999777776654 3 677777776 4333333211100
Q ss_pred cccccccCCccceeeEEEcCCCCEEEEE-eCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 389 LCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 389 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.-..++|+|++..|..+ +..+.|..+++... .....+.........+++ ..+.++.+-...+.|..
T Consensus 247 -----------~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~ 313 (386)
T 3v65_B 247 -----------WPNGLTIDYAGRRMYWVDAKHHVIERANLDGS-HRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINS 313 (386)
T ss_dssp -----------CEEEEEEEGGGTEEEEEETTTTEEEEECTTSC-SCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEE
T ss_pred -----------CeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC-eeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEE
Confidence 01279999877666554 45678999998643 322333333445566777 34455555555666655
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.026 Score=51.36 Aligned_cols=189 Identities=8% Similarity=-0.032 Sum_probs=108.7
Q ss_pred eEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCC
Q 010256 236 INSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 315 (514)
Q Consensus 236 v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~ 315 (514)
..|.+..+ ...|+.+....|+..++...... .+ .. ....+..++|++.+..++.+-...+.|..+++...
T Consensus 36 ~~C~~~~~-~~~ll~~~~~~I~~i~~~g~~~~-~~-------~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~ 105 (349)
T 3v64_C 36 RSCKALGP-EPVLLFANRIDIRQVLPHRSEYT-LL-------LN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGS 105 (349)
T ss_dssp SCEEESSS-CCEEEEECBSCEEEECTTSCCEE-EE-------EC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred Cccccccc-CceeEeecccceEEEeCCCCeeE-Ee-------ec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCC
Confidence 34555555 34555565556888888643221 11 11 23447899999876355555556788999998765
Q ss_pred ccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe--CCeEEEEEccCCCCceeeeeecccccccccccc
Q 010256 316 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLY 393 (514)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (514)
... .+... .......+++.+.+..|+..+ .+.|.+.++.. .....+.... ..
T Consensus 106 ~~~-----~~~~~-----------~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG--~~~~~l~~~~-l~------- 159 (349)
T 3v64_C 106 NVE-----EVVST-----------GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG--AHRKVLLWQS-LE------- 159 (349)
T ss_dssp SCE-----EEECS-----------SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEECTT-CS-------
T ss_pred Cce-----EEEeC-----------CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCC--CceEEEEeCC-CC-------
Confidence 421 11100 112457899998666665543 38899999873 3333322111 00
Q ss_pred ccCCccceeeEEEcCCCCEEEEEe-CC-CcEEEEecCCCceeeeeecCCCcceeEEEECCCCCce-eecCCCCeEEE
Q 010256 394 ENDSIFDKFECCLSGDGGRVATGS-YS-NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSR-PLGSLSGVVRR 467 (514)
Q Consensus 394 ~~~~~~~v~~~~~s~~~~~l~s~~-~d-g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~s~d~~v~i 467 (514)
.-..++++|.+..|+... .. +.|+.+++... .....+.........++++|++..| .+-+..+.|..
T Consensus 160 ------~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~ 229 (349)
T 3v64_C 160 ------KPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIER 229 (349)
T ss_dssp ------CEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred ------CcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-CcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEE
Confidence 012799999666555443 44 78888887643 2222223334556789999866544 44445566666
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.033 Score=52.27 Aligned_cols=255 Identities=9% Similarity=-0.003 Sum_probs=127.6
Q ss_pred cceEEEEEcCC--CCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccc
Q 010256 36 DIISAIEFDKS--GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (514)
Q Consensus 36 ~~V~~~~~s~~--g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (514)
.....|+|+|+ +..|..+...+.|+.++..++... .+.... .
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~------------------------~~~~~~------------~ 182 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVD------------------------IKTTNI------------G 182 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEE------------------------EECCCC------------S
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEE------------------------EeecCC------------C
Confidence 45678999995 445555554488999997665531 111111 4
Q ss_pred ceeEEEEeeCCCCcEEEEeeCC---Ce-EEEEEcCccEE--EEEeeccCCCccccCCcceecccccCCceeecc-CCCcc
Q 010256 114 KINKIRWCQSANSALYLLSTND---KT-IKLWKVQEKKV--KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA-NGGCG 186 (514)
Q Consensus 114 ~v~~i~~~~~~~~~~l~s~~~d---~~-i~iw~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~l 186 (514)
....|++ +++|.++++.... .. +...+...+.. ..... ...+..+++.| +|...
T Consensus 183 ~P~giav--d~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~-----------------~~~P~giavd~~~G~ly 243 (433)
T 4hw6_A 183 QCADVNF--TLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCN-----------------ARGAKTCAVHPQNGKIY 243 (433)
T ss_dssp CEEEEEE--CTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEE-----------------CSSBCCCEECTTTCCEE
T ss_pred CccEEEE--CCCCCEEEEcCCCCcccceEEEEECCCCeeccccccc-----------------cCCCCEEEEeCCCCeEE
Confidence 5788999 5677744443211 11 22222211110 00001 12233678888 55544
Q ss_pred ccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCeEEEEeccCC
Q 010256 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEIS 264 (514)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~ 264 (514)
++-..++.|..++ ...... .. ..+..+....-..++|+|+++.|..+ ..+.|+.++....
T Consensus 244 ------------v~d~~~~~V~~~d-~~~g~~---~~--~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~ 305 (433)
T 4hw6_A 244 ------------YTRYHHAMISSYD-PATGTL---TE--EEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRE 305 (433)
T ss_dssp ------------ECBTTCSEEEEEC-TTTCCE---EE--EEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTT
T ss_pred ------------EEECCCCEEEEEE-CCCCeE---EE--EEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCC
Confidence 4555566777666 211110 00 00011112233479999999966555 6789999887532
Q ss_pred Ccee---eeeccCC--Ccc------cccCCceEEEEE---------ecCCCcEEEEEecCCeEEEEEcCCCccccccccc
Q 010256 265 NQSF---NIVDVKP--ANM------EDLTEVITSAEF---------HPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKL 324 (514)
Q Consensus 265 ~~~~---~~~~~~~--~~~------~~~~~~i~~v~~---------~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 324 (514)
...+ ..+.... ..+ ...-.....+++ .+++ +++++-...+.|+.++. ++.. .+
T Consensus 306 ~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g-~lyvaD~~n~~I~~~~~-~G~v-----~t 378 (433)
T 4hw6_A 306 TGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEY-DFYFCDRDSHTVRVLTP-EGRV-----TT 378 (433)
T ss_dssp TCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCE-EEEEEETTTTEEEEECT-TSEE-----EE
T ss_pred CcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCC-cEEEEECCCCEEEEECC-CCCE-----EE
Confidence 1110 0110000 000 001234678999 6666 67776667789999985 4432 22
Q ss_pred eeccCC---CCcc---ceeeccccceeEEEEe-cCCCEEEEEeC-CeEEEEEcc
Q 010256 325 FEEQEA---PGTR---SFFTEIIASISDIKFA-RNGRHILSRDY-MTLKLWDIN 370 (514)
Q Consensus 325 ~~~~~~---~~~~---~~~~~~~~~i~~~~~s-~~g~~l~~~~~-~~i~iwd~~ 370 (514)
+-+... .... ......-.....|+++ ++|.++++-.. ++|+.++++
T Consensus 379 ~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 379 YAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 221110 0000 0000112357889999 56655555333 788887764
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00061 Score=68.40 Aligned_cols=175 Identities=11% Similarity=-0.016 Sum_probs=92.9
Q ss_pred CeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC-CeEEEEE
Q 010256 235 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-GSIRLID 311 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d-g~i~~wd 311 (514)
....|++.+.+..|..+ ..+.|.++++.... ...++ .........++++|.++.++++-... +.|..++
T Consensus 454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~-~~~l~-------~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~ 525 (699)
T 1n7d_A 454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLF-------REQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 525 (699)
T ss_dssp -CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC-EEEEC-------CCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCC
T ss_pred CcceEEEEeeCCcEEEEeccCCeEEEEecCCCc-eEEEE-------eCCCCCcceEEEccCCCcEEEcccCCCCeEEEEe
Confidence 34578888655444444 67889999987332 22221 11123457788998763444443222 6777777
Q ss_pred cCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC--CeEEEEEccCCCCceeeeeecccccccc
Q 010256 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKL 389 (514)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 389 (514)
+..... +.+.. ........|+|+|++..|+.++. +.|..+++.. .....+........
T Consensus 526 ~dG~~~-----~~l~~-----------~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG--~~~~~~~~~~~~~~-- 585 (699)
T 1n7d_A 526 LNGVDI-----YSLVT-----------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG--GNRKTILEDEKRLA-- 585 (699)
T ss_dssp SSSCCC-----CEESC-----------SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS--SCCEEECCCSSSCS--
T ss_pred CCCCCe-----eEEEe-----------CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC--CceEEEEecCCcCC--
Confidence 654221 11100 01134678999998777766543 7899998863 32222221100000
Q ss_pred ccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEE
Q 010256 390 CDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQ 449 (514)
Q Consensus 390 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 449 (514)
. -..+++..+ .++++....+.|..++..+++.. .++.........+++
T Consensus 586 -------~---P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~-~~i~~~~~~P~~i~v 633 (699)
T 1n7d_A 586 -------H---PFSLAVFED-KVFWTDIINEAIFSANRLTGSDV-NLLAENLLSPEDMVL 633 (699)
T ss_dssp -------S---CCCCEEETT-EEEEECSTTTCEEEEETTTEEEE-ECCCTTCSSCCCCCB
T ss_pred -------C---ceEeEEECC-EEEEEeCCCCeEEEEEccCCCce-EEeecCCCCCcEEEE
Confidence 0 115666543 44555556789999998776433 344332223334443
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0068 Score=57.00 Aligned_cols=148 Identities=11% Similarity=0.030 Sum_probs=89.5
Q ss_pred ceEEEEEec-CCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-
Q 010256 284 VITSAEFHP-THCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY- 361 (514)
Q Consensus 284 ~i~~v~~~p-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~- 361 (514)
....++++| ++ ..|+.+...+.|+.+|+..+... .+.. .......++|+++|++|+.++.
T Consensus 138 ~P~~lavdp~~~-g~Lyv~d~~~~I~~id~~~~~v~-----~~~~------------~~~~P~~ia~d~~G~~lyvad~~ 199 (430)
T 3tc9_A 138 GAVWLSFDPKNH-NHLYLVGEQHPTRLIDFEKEYVS-----TVYS------------GLSKVRTICWTHEADSMIITNDQ 199 (430)
T ss_dssp CCCEEEEETTEE-EEEEEEEBTEEEEEEETTTTEEE-----EEEC------------CCSCEEEEEECTTSSEEEEEECC
T ss_pred CCCEEEECCCCC-CeEEEEeCCCcEEEEECCCCEEE-----EEec------------CCCCcceEEEeCCCCEEEEEeCC
Confidence 457889998 34 35555555588999998776531 1111 1145789999999996665432
Q ss_pred -C----eEEEEEccCCCCce--eeeeeccccccccccccccCCccceeeEEEcC-CCCEEEEEeCCCcEEEEecCCCcee
Q 010256 362 -M----TLKLWDINMDSGPV--ATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 362 -~----~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
+ .+.+++.. +... ..+..... ...++++| +|.++++-..+++|+.++...+...
T Consensus 200 ~~~~~~~v~~~~~~--g~~~~~~~l~~~~~----------------p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~ 261 (430)
T 3tc9_A 200 NNNDRPNNYILTRE--SGFKVITELTKGQN----------------CNGAETHPINGELYFNSWNAGQVFRYDFTTQETT 261 (430)
T ss_dssp SCTTSEEEEEEEGG--GTSCSEEEEEECSS----------------CCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE
T ss_pred CCcccceEEEEeCC--CceeeeeeeccCCC----------------ceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE
Confidence 1 33334433 3222 22221111 11789999 7777776667789999998865321
Q ss_pred eeeecCCCcceeEEEECCCCC-ceeecCCCCeEEE
Q 010256 434 STTLEASKNPMRRQVQTPSRP-SRPLGSLSGVVRR 467 (514)
Q Consensus 434 ~~~~~~~~~~v~~~~~~~~~~-~l~s~s~d~~v~i 467 (514)
.....+.....+.++++|+++ ++++-...+.|..
T Consensus 262 ~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~ 296 (430)
T 3tc9_A 262 PLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILR 296 (430)
T ss_dssp EEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred EEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEE
Confidence 111112224467899999999 4555556667766
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.034 Score=49.08 Aligned_cols=175 Identities=9% Similarity=0.066 Sum_probs=99.5
Q ss_pred CCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE---ecCCCEEEE
Q 010256 282 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF---ARNGRHILS 358 (514)
Q Consensus 282 ~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---s~~g~~l~~ 358 (514)
.....+++|++..+.++++.-..++|..||...+.... + .++.-..+. .....+..+.| .|+++++++
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~--~-~~~~~s~~g------~~~~~~sGl~~~~~D~~grL~vv 82 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFN--V-VIDGASSNG------DGEQQMSGLSLLTHDNSKRLFAV 82 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEE--E-CCTTTCCSS------CCSEEEEEEEESSSSSCCEEEEE
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEE--E-ecCCccccC------CCcceeeEEEEeccCCCCcEEEE
Confidence 34455789998763444444479999999987554311 1 121100000 00013578999 688888886
Q ss_pred Ee--------------CCeEEEEEcc---CCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCC-C
Q 010256 359 RD--------------YMTLKLWDIN---MDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-N 420 (514)
Q Consensus 359 ~~--------------~~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-g 420 (514)
.. +..|..||+. + ++.+.......... ...... .........++..++|+..++++.. +
T Consensus 83 ~~~~~af~~~g~~~~g~~~v~~~Dl~~~~t-g~~~~~~dL~~~~~-~~~~~~-g~~~~~~nDvavD~~GnaYVt~s~~~~ 159 (334)
T 2p9w_A 83 MKNAKSFNFADQSSHGASSFHSFNLPLSEN-SKPVWSVNFEKVQD-EFEKKA-GKRPFGVVQSAQDRDGNSYVAFALGMP 159 (334)
T ss_dssp EEETTTTCTTSCCSSSCCEEEEEESSCCTT-CCCSEEEESHHHHH-HHHHHH-SSCCEEEEEEEECTTSCEEEEEEESSC
T ss_pred EcccccccccccccCCCCEEEEEcCCcCCC-CCEEEEecCccccc-cccccc-cccccCCceeEECCCCCEEEeCCCCCC
Confidence 43 4678999988 6 55554443211000 000000 0001113389999999999998887 7
Q ss_pred cEEEEecCCCceee-eeecC----CCcceeEEEECCCCCceeecCCCCeEEEee
Q 010256 421 LFRVFGCSEGSAES-TTLEA----SKNPMRRQVQTPSRPSRPLGSLSGVVRRVK 469 (514)
Q Consensus 421 ~i~iwd~~~~~~~~-~~~~~----~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~ 469 (514)
.|...+.... ... ..+.. ..-..+.++++|+++.|+....++.+...+
T Consensus 160 ~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD 212 (334)
T 2p9w_A 160 AIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFD 212 (334)
T ss_dssp EEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEE
T ss_pred eEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEc
Confidence 7777666532 221 11111 112256899999999887776688777643
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.53 E-value=0.045 Score=48.98 Aligned_cols=180 Identities=7% Similarity=-0.045 Sum_probs=103.9
Q ss_pred EEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCC---cccccccc
Q 010256 247 TFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS---ALCDTHSK 323 (514)
Q Consensus 247 ~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~---~~~~~~~~ 323 (514)
+|+.+....|+..|+...... .++ .....+..++|++.+..++++-..++.|..+++... ... ..
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~-~~~--------~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~---~~ 70 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYT-SLI--------PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY---DT 70 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCE-EEE--------CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C---EE
T ss_pred EEEEECCCeEEEEECCCcceE-ehh--------cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCccc---EE
Confidence 455565567889998854432 221 123457899999876356666666789999998752 111 01
Q ss_pred ceeccCCCCccceeeccccceeEEEEecCCCEEEEEe--CCeEEEEEccCCCCceeeeeeccccccccccccccCCccce
Q 010256 324 LFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 401 (514)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 401 (514)
.+. ........+++.+.+..|+..+ .+.|.++++. +.....+...... .-
T Consensus 71 ~~~------------~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~--g~~~~~~~~~~~~--------------~P 122 (316)
T 1ijq_A 71 VIS------------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK--GVKRKTLFRENGS--------------KP 122 (316)
T ss_dssp EEC------------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT--SSSEEEEEECTTC--------------CE
T ss_pred EEe------------CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCC--CCceEEEEECCCC--------------Cc
Confidence 111 0112457899987666665543 3899999986 3333333211100 01
Q ss_pred eeEEEcCCCCEEEEEeC-C-CcEEEEecCCCceeeeeecCCCcceeEEEECCCCCce-eecCCCCeEEE
Q 010256 402 FECCLSGDGGRVATGSY-S-NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSR-PLGSLSGVVRR 467 (514)
Q Consensus 402 ~~~~~s~~~~~l~s~~~-d-g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~s~d~~v~i 467 (514)
..++++|.+..|+.+.. . +.|...++... ...............+++++++..| .+-+..+.|..
T Consensus 123 ~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~ 190 (316)
T 1ijq_A 123 RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 190 (316)
T ss_dssp EEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred ceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEE
Confidence 27899997766655443 2 68888887633 2222223344567789999876654 44455667776
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.09 Score=51.47 Aligned_cols=77 Identities=10% Similarity=0.138 Sum_probs=41.3
Q ss_pred CCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEee---CCCCCccccCCcccccccceEEEEEc
Q 010256 419 SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVK---GADNSALDANGNAFDFSMKLLHLAWH 495 (514)
Q Consensus 419 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~---~~~~~~~~~~~~~~~~~~~v~~~~~s 495 (514)
+|.|.-||+.+++.+ -..+... ++..-.....+.+++.++.|+.++.++ |..+++..+.. ...-.-+.|.
T Consensus 465 ~G~l~A~D~~tG~~~-W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~-----g~~a~P~~y~ 537 (582)
T 1flg_A 465 VGSLRAMDPVSGKVV-WEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGS-----GIVSPPITWE 537 (582)
T ss_dssp SEEEEEECTTTCCEE-EEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS-----CCCSCCEEEE
T ss_pred cceEEEEECCCCCEE-EEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCC-----CcccCceEEE
Confidence 578999999988543 2222221 222211222466777799999999843 34444222211 1111236667
Q ss_pred CCCCEEE
Q 010256 496 PSENSIA 502 (514)
Q Consensus 496 pd~~~l~ 502 (514)
.+|+..+
T Consensus 538 ~~G~qYv 544 (582)
T 1flg_A 538 QDGEQYL 544 (582)
T ss_dssp ETTEEEE
T ss_pred ECCEEEE
Confidence 8887544
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.13 Score=50.67 Aligned_cols=370 Identities=11% Similarity=-0.012 Sum_probs=179.4
Q ss_pred ccceEEEEEcCCCCeEEEec-CCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccccc
Q 010256 35 VDIISAIEFDKSGDHLATGD-RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEE 113 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 113 (514)
......|+|++.+..|..+. ..+.|..+++.+.... ...+...- .
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~----------------------~~v~~~~~------------~ 84 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV----------------------QNVVVSGL------------L 84 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----C----------------------EEEECSSC------------S
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCce----------------------EEEEeCCC------------C
Confidence 45578899998766666554 4677888887543210 01111110 3
Q ss_pred ceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCC
Q 010256 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (514)
Q Consensus 114 ~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (514)
....|++.+ ..+.++++-...+.|.+.++.......+..... ..+..+++.|.+..+
T Consensus 85 ~P~GlAvD~-~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l---------------~~P~~Iavdp~~g~l------- 141 (619)
T 3s94_A 85 SPDGLACDW-LGEKLYWTDSETNRIEVSNLDGSLRKVLFWQEL---------------DQPRAIALDPSSGFM------- 141 (619)
T ss_dssp CEEEEEEET-TTTEEEEEETTTTEEEEEETTSCSCEEEECSSC---------------SCCCCEEEETTTTEE-------
T ss_pred CcCeEEEEe-cCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCC---------------CCCceEEEecCCCeE-------
Confidence 467777742 134455555677899999987654333322111 123377887765544
Q ss_pred CCCcccCCCC--CCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceee
Q 010256 194 SNDSSFPPGG--VSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 194 ~~~~~~~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~ 269 (514)
+.... .+.|...+ .+. .....+....-...+.|++++++..|..+ ..+.|...|++.. ....
T Consensus 142 -----y~tD~g~~~~I~r~~----~dG----~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~-~~~~ 207 (619)
T 3s94_A 142 -----YWTDWGEVPKIERAG----MDG----SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT-NRQA 207 (619)
T ss_dssp -----EEEECSSSCEEEEEE----TTS----CSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCC-EEC-
T ss_pred -----EEeccCCCCEEEEEE----CCC----CceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCC-ccEE
Confidence 22221 23333222 111 11111111223457899999987777776 5778888888732 2211
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccc---------ccceeccCCCCccceeecc
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTH---------SKLFEEQEAPGTRSFFTEI 340 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 340 (514)
+. .+......++++..+ .++++-...+.|...|..+++..... +..+.....|.....-...
T Consensus 208 ~~-------~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ 278 (619)
T 3s94_A 208 VV-------KGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGID 278 (619)
T ss_dssp ---------------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTT
T ss_pred EE-------eCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCC
Confidence 11 111122346666544 45555556788999998776532110 0111110001000000000
Q ss_pred ccceeEEE-----------EecCC---------------CEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccc
Q 010256 341 IASISDIK-----------FARNG---------------RHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYE 394 (514)
Q Consensus 341 ~~~i~~~~-----------~s~~g---------------~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (514)
.+....++ ..|.| .+|+.+..+.|+..++.........+..
T Consensus 279 ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~------------- 345 (619)
T 3s94_A 279 NGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQL------------- 345 (619)
T ss_dssp GGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCEEEEESSSTTCCCEECCC-------------
T ss_pred CCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEcccceEEEecCCCccceeEEec-------------
Confidence 00011111 11221 1344444455665565531111111110
Q ss_pred cCCccceeeEEEcCCCCEEEEE-eCCCcEEEEecCCCceeeeeecCCCcceeEEEECC-CCCceeecCCCCeEEEe--eC
Q 010256 395 NDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTP-SRPSRPLGSLSGVVRRV--KG 470 (514)
Q Consensus 395 ~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~s~d~~v~i~--~~ 470 (514)
..+.....++|++.+..|+.+ ...+.|+.+++..... ...+.........+++.+ .+++..+-+..+.|.+. +|
T Consensus 346 -~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~-~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G 423 (619)
T 3s94_A 346 -EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGS-QFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNG 423 (619)
T ss_dssp -SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred -cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCcc-EEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCC
Confidence 011123478999866655544 4578899998875422 233443445667888886 45566666677788873 23
Q ss_pred CCCCccccCCcccccccceEEEEEcCCCCEEEEE
Q 010256 471 ADNSALDANGNAFDFSMKLLHLAWHPSENSIACA 504 (514)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~ 504 (514)
.... .+.. +--...+.|++.|....|..+
T Consensus 424 ~~~~--~l~~---~~l~~P~~iavdp~~G~ly~t 452 (619)
T 3s94_A 424 TMRK--ILIS---EDLEEPRAIVLDPMVGYMYWT 452 (619)
T ss_dssp CSCE--EEEC---TTCCSEEEEEEETTTTEEEEE
T ss_pred CeEE--EEEE---CCCCCeeeEEEEcCCCcEEEe
Confidence 2111 1110 123567889999874444433
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.09 Score=53.30 Aligned_cols=183 Identities=7% Similarity=-0.070 Sum_probs=105.2
Q ss_pred EEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccccccee
Q 010256 247 TFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 326 (514)
Q Consensus 247 ~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 326 (514)
+|+.+....|+..++...... .+ ......+..++|++....++++-...+.|+.+++............
T Consensus 397 ~Ll~an~~~Ir~i~l~~~~~~-~l--------~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~v-- 465 (791)
T 3m0c_C 397 YLFFTNRHEVRKMTLDRSEYT-SL--------IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV-- 465 (791)
T ss_dssp EEEEECBSSEEEECTTSCCCE-EE--------ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE--
T ss_pred ccccccccceeEeeccCCcce-ee--------ecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEE--
Confidence 444455566777777643321 11 1234567899999866356666666788988888653210000111
Q ss_pred ccCCCCccceeeccccceeEEEEecCCCEEEEEeC--CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeE
Q 010256 327 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC 404 (514)
Q Consensus 327 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 404 (514)
+.........|++.+.++.|+..+. +.|.+.++. +.....+...... ....|
T Consensus 466 ----------i~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld--G~~~~~l~~~~l~--------------~P~gI 519 (791)
T 3m0c_C 466 ----------ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK--GVKRKTLFRENGS--------------KPRAI 519 (791)
T ss_dssp ----------ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT--SSSEEEEEECTTC--------------CEEEE
T ss_pred ----------EecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC--CCeEEEEEeCCCC--------------CcceE
Confidence 1111245678999988877776543 899999987 4444444321110 01279
Q ss_pred EEcCCCCEEEEEeC-C-CcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeec-CCCCeEEE
Q 010256 405 CLSGDGGRVATGSY-S-NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG-SLSGVVRR 467 (514)
Q Consensus 405 ~~s~~~~~l~s~~~-d-g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-s~d~~v~i 467 (514)
+++|.+.+|+.... . ++|...++... .....+.........+++.+.+..|..+ .....|..
T Consensus 520 aVDp~~g~LYwtD~g~~~~I~~~~~dG~-~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~ 584 (791)
T 3m0c_C 520 VVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 584 (791)
T ss_dssp EEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEecCCCCEEEecCCCCCeEEEEecCCC-ceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEE
Confidence 99998666665543 2 67888888643 3333444445677889999766554444 44556666
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.08 Score=47.59 Aligned_cols=236 Identities=11% Similarity=0.050 Sum_probs=122.6
Q ss_pred cCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcC
Q 010256 234 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~ 313 (514)
..+.+|.|.+.+..++++..+.|. ...+ +....+.+.. ........+.+|.|.+ + ..++. +..+.|.. ...
T Consensus 36 ~~~~~v~~~~~~~~~~~G~~g~i~-~s~D-gG~tW~~~~~---~~~~~~~~~~~i~~~~-~-~~~~~-g~~g~i~~-S~D 106 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWLVGVNATLM-ETRD-GGQTWEPRTL---VLDHSDYRFNSVSFQG-N-EGWIV-GEPPIMLH-TTD 106 (327)
T ss_dssp SCEEEEEESSSSCEEEEETTTEEE-EESS-TTSSCEECCC---CCSCCCCEEEEEEEET-T-EEEEE-EETTEEEE-ESS
T ss_pred CcEEEEEECCCCcEEEEcCCCeEE-EeCC-CCCCCeECCC---CCCCCCccEEEEEecC-C-eEEEE-ECCCeEEE-ECC
Confidence 468899998888888877777653 3333 3333222110 1111244688999987 4 45554 45564432 222
Q ss_pred CCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeecccccccccccc
Q 010256 314 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLY 393 (514)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (514)
.++. +.....+ ..+.+.+..+.+.++++.++++.++.| |.....++.-........
T Consensus 107 gG~t-------W~~~~~~------~~~~~~~~~i~~~~~~~~~~~~~~g~v--~~S~DgG~tW~~~~~~~~--------- 162 (327)
T 2xbg_A 107 GGQS-------WSQIPLD------PKLPGSPRLIKALGNGSAEMITNVGAI--YRTKDSGKNWQALVQEAI--------- 162 (327)
T ss_dssp TTSS-------CEECCCC------TTCSSCEEEEEEEETTEEEEEETTCCE--EEESSTTSSEEEEECSCC---------
T ss_pred CCCC-------ceECccc------cCCCCCeEEEEEECCCCEEEEeCCccE--EEEcCCCCCCEEeecCCC---------
Confidence 2322 1111100 001134667887777877777766543 332222333322221100
Q ss_pred ccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEe--eCC
Q 010256 394 ENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRV--KGA 471 (514)
Q Consensus 394 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~--~~~ 471 (514)
. .+..+++.+++.+++.+...+..+-+|-...... ..-......+..+.+.+++.+++.+ .+|.+++. ++.
T Consensus 163 --~---~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~-~~~~~~~~~~~~~~~~~~g~~~~~~-~~G~~~~s~~D~G 235 (327)
T 2xbg_A 163 --G---VMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWE-PHNRTTSRRLHNMGFTPDGRLWMIV-NGGKIAFSDPDNS 235 (327)
T ss_dssp --C---CEEEEEECTTSCEEEEETTSSEEEEECTTCSSCE-EEECCSSSCEEEEEECTTSCEEEEE-TTTEEEEEETTEE
T ss_pred --c---ceEEEEEcCCCcEEEEECCCcEEEEeCCCCCcee-ECCCCCCCccceeEECCCCCEEEEe-CCceEEEecCCCC
Confidence 0 1347899999988877654333333442111111 1122345567888899988766554 56777663 212
Q ss_pred CCCccccCCcccccccceEEEEEcCCCCEEEEEecCcEE
Q 010256 472 DNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLY 510 (514)
Q Consensus 472 ~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~ 510 (514)
..+. .+....+.....+..+++.+++.+++++....++
T Consensus 236 ~tW~-~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i~ 273 (327)
T 2xbg_A 236 ENWG-ELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALL 273 (327)
T ss_dssp EEEC-CCBCTTSSCCSCEEEEEESSSSCEEEEESTTCEE
T ss_pred CeeE-eccCCcccCCcceEEEEecCCCEEEEEeCCCeEE
Confidence 2211 0111101123458899999998888887765553
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.088 Score=47.86 Aligned_cols=112 Identities=13% Similarity=0.079 Sum_probs=62.3
Q ss_pred cCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecC---CCcEEEEEec---C---
Q 010256 234 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSSS---K--- 304 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~---~~~~l~~~~~---d--- 304 (514)
.....++|.|+|+++++-.++.|++++.. +. ..+..+. ...........|+++|+ ++.++++-+. +
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~~-G~--~~~~~~~--v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISPS-GK--KLVASFD--VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECSS-CE--EEEEECC--CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeCC-Cc--eEeeccc--eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 45678999999987776666999999743 33 1121111 11222456889999997 4245554432 3
Q ss_pred -CeEEEEEcCCCcc-ccccccceeccCCCCccceeeccccceeEEEEecCCCEEEE
Q 010256 305 -GSIRLIDMRQSAL-CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 358 (514)
Q Consensus 305 -g~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 358 (514)
..|..|+...... .......+..-.. -..| ....++|.|||.+.++
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~------~~~h--~~~~l~~~pDG~Lyvt 151 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPG------AYIH--NGGRIRFGPDGMLYIT 151 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEEC------CSSC--CCCCEEECTTSCEEEE
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCC------CCCc--CCceEEECCCCcEEEE
Confidence 5677777664310 0000001110000 0112 3467999999987777
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.30 E-value=0.086 Score=47.08 Aligned_cols=192 Identities=6% Similarity=-0.084 Sum_probs=110.8
Q ss_pred CeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEc
Q 010256 235 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~ 312 (514)
.+.+++|++.+..|..+ ..+.|..+++........+ ....-.....+++.+.+++++++-...+.|.++++
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~-------~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~ 108 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV-------VVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNL 108 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEE-------EEECCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEE-------EcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEEC
Confidence 45688999865555554 6889999998754321111 11112345688999765466666667789999998
Q ss_pred CCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe---CCeEEEEEccCCCCceeeeeecccccccc
Q 010256 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD---YMTLKLWDINMDSGPVATFQVHEHLRPKL 389 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 389 (514)
..... ..+.. ........+++.|.+..|+..+ .+.|...++. +.....+.... .
T Consensus 109 dG~~~-----~~l~~-----------~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~~~~~-l---- 165 (318)
T 3sov_A 109 DGSLR-----KVLFW-----------QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD--GSSRFIIINSE-I---- 165 (318)
T ss_dssp TSCSC-----EEEEC-----------SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT--SCSCEEEECSS-C----
T ss_pred CCCcE-----EEEEe-----------CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC--CCCeEEEEECC-C----
Confidence 65321 11111 1113568899999766666544 2677777776 44333332111 0
Q ss_pred ccccccCCccceeeEEEcCCCCEEEEE-eCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 390 CDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 390 ~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
..-..+++++++..|..+ +..+.|..+|+... .......+.......+++..+ .++.+-...+.|..
T Consensus 166 ---------~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~P~glav~~~-~lywtd~~~~~V~~ 233 (318)
T 3sov_A 166 ---------YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT-NRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILA 233 (318)
T ss_dssp ---------SCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSCCSCEEEEEEETT-EEEEEETTTTEEEE
T ss_pred ---------CCccEEEEeccCCEEEEEECCCCEEEEEcCCCC-ceEEEecCCCCCceEEEEeCC-EEEEEecCCCeEEE
Confidence 001279999977666655 45678999998743 222333333444556666433 34444444555554
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.06 E-value=0.19 Score=46.52 Aligned_cols=184 Identities=7% Similarity=-0.075 Sum_probs=106.4
Q ss_pred CEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccce
Q 010256 246 ETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF 325 (514)
Q Consensus 246 ~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 325 (514)
.+|+.+....|+..++...... .+ ......+..++|++.+..++.+-...+.|+.+++........ ...+
T Consensus 84 ~~ll~~~~~~I~~i~l~~~~~~-~~--------~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~-~~~~ 153 (400)
T 3p5b_L 84 AYLFFTNRHEVRKMTLDRSEYT-SL--------IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS-YDTV 153 (400)
T ss_dssp CEEEEEETTEEEEECTTSCSCE-EE--------ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CC-CEEE
T ss_pred ceeEEeccceeEEEccCCccee-Ee--------ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCc-ceEE
Confidence 4555566678999998744322 11 123456789999987635555555678899888865321000 0111
Q ss_pred eccCCCCccceeeccccceeEEEEecCCCEEEEEe-C-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceee
Q 010256 326 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFE 403 (514)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 403 (514)
+.........+++.+.+..|+..+ . +.|.+.+++ +.....+...... ....
T Consensus 154 -----------~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~--g~~~~~l~~~~~~--------------~P~~ 206 (400)
T 3p5b_L 154 -----------ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK--GVKRKTLFRENGS--------------KPRA 206 (400)
T ss_dssp -----------ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT--TCSEEEEEECSSC--------------CEEE
T ss_pred -----------EeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC--CCceEEEEeCCCC--------------Ccce
Confidence 111113577899998666666543 3 889888887 3433333221110 0127
Q ss_pred EEEcCCCCEEEEEeC--CCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeec-CCCCeEEE
Q 010256 404 CCLSGDGGRVATGSY--SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG-SLSGVVRR 467 (514)
Q Consensus 404 ~~~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-s~d~~v~i 467 (514)
++++|.+.+|+.... .+.|+..++... .....+.........+++++++..|..+ +....|..
T Consensus 207 iavdp~~g~ly~td~~~~~~I~~~~~dG~-~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~ 272 (400)
T 3p5b_L 207 IVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 272 (400)
T ss_dssp EEEETTTTEEEEEECSSSCCEEEEETTSC-SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEecccCeEEEEeCCCCCEEEEEeCCCC-ccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEE
Confidence 999997766665542 378888888643 3223334444667899999876655444 45566666
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.32 Score=48.06 Aligned_cols=197 Identities=11% Similarity=-0.004 Sum_probs=106.6
Q ss_pred cceEEEEEcCCCCeEEEe-cCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccc
Q 010256 36 DIISAIEFDKSGDHLATG-DRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (514)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (514)
..+..|+|++.+..|... ..++.|..+++...... ..+.... ..
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~-----------------------~v~~~g~------------~~ 81 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALE-----------------------HVVEFGL------------DY 81 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-----------------------EEECSSC------------SC
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE-----------------------EEEeCCC------------CC
Confidence 467899999966655544 46788888887643211 0111000 22
Q ss_pred eeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCC
Q 010256 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (514)
Q Consensus 115 v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (514)
...|++.+ ..+.++++-...+.|.+.++.......+..... ..+..+++.|....+
T Consensus 82 P~GlAvD~-~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l---------------~~P~~iavdp~~G~l-------- 137 (628)
T 4a0p_A 82 PEGMAVDW-LGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDL---------------DSPRALALDPAEGFM-------- 137 (628)
T ss_dssp CCEEEEET-TTTEEEEEETTTTEEEEEETTSTTCEEEECSSC---------------CCEEEEEEETTTTEE--------
T ss_pred cceEEEEe-CCCEEEEEECCCCEEEEEecCCCcEEEEEeCCC---------------CCcccEEEccCCCeE--------
Confidence 45566632 234455555667889998887654322221111 122367777755444
Q ss_pred CCcccCCC--CCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeee
Q 010256 195 NDSSFPPG--GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 195 ~~~~~~~~--~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~ 270 (514)
+... ..+.|...+ .+.. ....+ ...-.....|++++++..|..+ ..+.|...|+..... ++
T Consensus 138 ----Y~tD~g~~~~I~r~~----~dG~----~~~~l-~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~--~v 202 (628)
T 4a0p_A 138 ----YWTEWGGKPKIDRAA----MDGS----ERTTL-VPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR--EV 202 (628)
T ss_dssp ----EEEECSSSCEEEEEE----TTSC----SCEEE-ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EE
T ss_pred ----EEeCCCCCCEEEEEe----CCCC----ceEEE-ECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce--EE
Confidence 2222 133444333 1111 11111 1123567899999988877777 578899999874333 22
Q ss_pred eccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCC
Q 010256 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 315 (514)
Q Consensus 271 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~ 315 (514)
+ ........++++.. + .++++-...+.|...|..++
T Consensus 203 ~-------~~~l~~P~glav~~-~-~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 203 I-------ADDLPHPFGLTQYQ-D-YIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp E-------EECCSCEEEEEEET-T-EEEEEETTTTEEEEEETTTC
T ss_pred e-------eccCCCceEEEEEC-C-EEEEecCCCCEEEEEECCCC
Confidence 1 11223355777765 3 55565555777777776544
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.18 Score=45.01 Aligned_cols=150 Identities=7% Similarity=0.129 Sum_probs=82.6
Q ss_pred CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEE--ecCCCc-EEEEEecCCeEEEEEcC---CCcccccccccee
Q 010256 253 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF--HPTHCN-MLAYSSSKGSIRLIDMR---QSALCDTHSKLFE 326 (514)
Q Consensus 253 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~--~p~~~~-~l~~~~~dg~i~~wd~~---~~~~~~~~~~~~~ 326 (514)
+++|.+|++......+..+......+......+..+++ +|.... ++++...+|.+..|++. .+....+.++.|.
T Consensus 98 ~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~ 177 (355)
T 3amr_A 98 KNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK 177 (355)
T ss_dssp CCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred CCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec
Confidence 68999997742222222211000000011155667777 675423 67778888999999984 3333333345555
Q ss_pred ccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCC----CceeeeeeccccccccccccccCCccce
Q 010256 327 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDS----GPVATFQVHEHLRPKLCDLYENDSIFDK 401 (514)
Q Consensus 327 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~v 401 (514)
.. +.+-.+...+....|+.+.. ..|..++.+... +.+..+. ..... .++
T Consensus 178 lg-------------sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~-~g~l~------------aDv 231 (355)
T 3amr_A 178 MN-------------SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD-GRHLT------------RDI 231 (355)
T ss_dssp CS-------------SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS-SSSBC------------SCE
T ss_pred CC-------------CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEec-CCccc------------cCc
Confidence 43 35788999988888888865 445555544211 1222221 11111 123
Q ss_pred eeEEE--cCCCC-EEEEEe-CCCcEEEEecC
Q 010256 402 FECCL--SGDGG-RVATGS-YSNLFRVFGCS 428 (514)
Q Consensus 402 ~~~~~--s~~~~-~l~s~~-~dg~i~iwd~~ 428 (514)
..+++ .++++ ||++++ .++++.+||..
T Consensus 232 EGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 232 EGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred ceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 35666 56666 665555 67799999997
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.067 Score=50.58 Aligned_cols=155 Identities=12% Similarity=-0.004 Sum_probs=90.4
Q ss_pred ceEEEEEecC-CCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE-------ecCCCE
Q 010256 284 VITSAEFHPT-HCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF-------ARNGRH 355 (514)
Q Consensus 284 ~i~~v~~~p~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-------s~~g~~ 355 (514)
....|+|+|. +.+++++-...+.|++.|+.++.+. .+-... .........++| +++|+.
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~-----~l~~~~--------~~~~~~p~~ia~~~~~~~~d~~G~~ 206 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLS-----SPLNIN--------TIPTNRIRSIAFNKKIEGYADEAEY 206 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEE-----EEECCT--------TSSCSBEEEEEECCCBTTTBCTTCE
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEE-----EEEccC--------ccccCCCcEEEEeecccccCCCCCE
Confidence 4678999983 4255555555578999998876642 111100 001135889999 999997
Q ss_pred EEEEeC-C-------eEEEEEccCCCCce-----eeeeeccccccccccccccCCccceeeEEEcCC-CCEEEEEeCCCc
Q 010256 356 ILSRDY-M-------TLKLWDINMDSGPV-----ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD-GGRVATGSYSNL 421 (514)
Q Consensus 356 l~~~~~-~-------~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~ 421 (514)
|+.+++ + .|.+++....+... ..+..... -..++++|+ +.++++-..++.
T Consensus 207 lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~----------------p~giavdp~~g~LYvtd~~~g~ 270 (496)
T 3kya_A 207 MIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQ----------------CNGATIHPINGELYFNSYEKGQ 270 (496)
T ss_dssp EEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESC----------------CCCEEECTTTCCEEEEETTTTE
T ss_pred EEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCC----------------ceEEEEcCCCCeEEEEECCCCE
Confidence 776654 2 25566533212221 12211111 117899995 555556667788
Q ss_pred EEEEecC-------CCce-----------eeeeec-CCCcceeEEEECCCCCc-eeecCCCCeEEE
Q 010256 422 FRVFGCS-------EGSA-----------ESTTLE-ASKNPMRRQVQTPSRPS-RPLGSLSGVVRR 467 (514)
Q Consensus 422 i~iwd~~-------~~~~-----------~~~~~~-~~~~~v~~~~~~~~~~~-l~s~s~d~~v~i 467 (514)
|+.+|+. ++.. ....+. +.....+.++++|++++ +++-+....|+.
T Consensus 271 V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~k 336 (496)
T 3kya_A 271 VFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMR 336 (496)
T ss_dssp EEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred EEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEE
Confidence 9999987 4432 001111 22345678999999994 444455666666
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.11 Score=47.46 Aligned_cols=165 Identities=12% Similarity=0.122 Sum_probs=98.1
Q ss_pred EECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccc--cCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcc
Q 010256 240 SNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMED--LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL 317 (514)
Q Consensus 240 ~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~ 317 (514)
....+|..++.+.++.||.-++.... .++.+. ... .-..+..+..+|+| .+||..+ +..|.|-.+..+..
T Consensus 27 ~~~~n~t~i~~a~~n~iR~~~i~~~~-~Yk~L~-----~~~~i~f~~i~qlvlSpsG-~lLAl~g-~~~V~Vv~LP~~~~ 98 (452)
T 3pbp_A 27 FSSQNGTRIVFIQDNIIRWYNVLTDS-LYHSLN-----FSRHLVLDDTFHVISSTSG-DLLCLFN-DNEIFVMEVPWGYS 98 (452)
T ss_dssp EEETTTTEEEEEETTEEEEEETTTCS-SCEEEE-----CTTTCCCCTTCEEEECTTS-SEEEEEC-SSEEEEEECCTTCS
T ss_pred EEEcCCCEEEEEECCEEEEEECCCCC-cceEEe-----cCcccccCceeEEEECCCC-CEEEEec-CCeEEEEEecCccc
Confidence 34567888888888999998887433 343321 221 12257789999999 7888765 55889988874321
Q ss_pred cccc--------ccceeccCCCCccceeeccccceeEEEEecC---CCEEEE-EeCCeEEEEEccCC-CCceeeeeeccc
Q 010256 318 CDTH--------SKLFEEQEAPGTRSFFTEIIASISDIKFARN---GRHILS-RDYMTLKLWDINMD-SGPVATFQVHEH 384 (514)
Q Consensus 318 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~---g~~l~~-~~~~~i~iwd~~~~-~~~~~~~~~~~~ 384 (514)
.... .+.+..... ......+|..+.|+|- +..|++ -+|+.|++||+... .++. .+....
T Consensus 99 ~~~~~~~~~~~q~~ty~l~~~------~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~- 170 (452)
T 3pbp_A 99 NVEDVSIQDAFQIFHYSIDEE------EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPN- 170 (452)
T ss_dssp CCCCHHHHHTTEEEEEEGGGC------C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCC-
T ss_pred cCcccccccccceeEEEcCCc------ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccc-
Confidence 1110 112222110 0012467999999994 445666 56799999999852 2233 332111
Q ss_pred cccccccccccCCccceeeEEEcCCCCEEEEEe--CCCcEEEE
Q 010256 385 LRPKLCDLYENDSIFDKFECCLSGDGGRVATGS--YSNLFRVF 425 (514)
Q Consensus 385 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--~dg~i~iw 425 (514)
..+-......+|.+++|..++-.|...+ .+|.|+-.
T Consensus 171 -----~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 171 -----NSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp -----SEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred -----cccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 0111122334567999999887666644 77877643
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=96.92 E-value=0.21 Score=44.61 Aligned_cols=157 Identities=11% Similarity=-0.008 Sum_probs=91.7
Q ss_pred eEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEe-cCCeEEEEEc
Q 010256 236 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDM 312 (514)
Q Consensus 236 v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg~i~~wd~ 312 (514)
...+++.+.+..|..+ ..+.|.+++++... ...+ ..........+++.|.++.++.+-. ..+.|...++
T Consensus 81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~~l-------~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~ 152 (318)
T 3sov_A 81 PDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-RKVL-------FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGM 152 (318)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEE-------ECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEET
T ss_pred ccEEEEEcCCCeEEEEECCCCEEEEEECCCCc-EEEE-------EeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEc
Confidence 4578888755554444 67899999987332 2111 1123455789999997634444432 2578888887
Q ss_pred CCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC--CeEEEEEccCCCCceeeeeeccccccccc
Q 010256 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLC 390 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 390 (514)
..... ..+-. ........++++|++..|+.++. +.|..+|+. +.....+......
T Consensus 153 dG~~~-----~~~~~-----------~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~----- 209 (318)
T 3sov_A 153 DGSSR-----FIIIN-----------SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD--GTNRQAVVKGSLP----- 209 (318)
T ss_dssp TSCSC-----EEEEC-----------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEECSCCS-----
T ss_pred CCCCe-----EEEEE-----------CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCC--CCceEEEecCCCC-----
Confidence 64321 11110 01135688999998877777643 889999986 3333333211100
Q ss_pred cccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCcee
Q 010256 391 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 391 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
. -..+++. .+.++.+-...+.|..++..+++..
T Consensus 210 ------~---P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~ 242 (318)
T 3sov_A 210 ------H---PFALTLF-EDILYWTDWSTHSILACNKYTGEGL 242 (318)
T ss_dssp ------C---EEEEEEE-TTEEEEEETTTTEEEEEETTTCCSC
T ss_pred ------C---ceEEEEe-CCEEEEEecCCCeEEEEECCCCCce
Confidence 0 1266765 3345555556788999998777543
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.016 Score=58.29 Aligned_cols=193 Identities=10% Similarity=-0.007 Sum_probs=103.5
Q ss_pred cCeEEEEECCCCCEEEEe--cCCeEEEEeccCC---CceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEE
Q 010256 234 YHINSISNNSDGETFISA--DDLRINLWNLEIS---NQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 308 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~ 308 (514)
..+..++|++.+..|..+ ..+.|+.+++... .....+ +.........|++.+.+.+++++-...+.|.
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~-------i~~~~~~P~glavD~~~g~LY~tD~~~~~I~ 478 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV-------ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVS 478 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCB-------CCSCC--CCCEECCCSSSBCEECCTTTSCEE
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEE-------EeCCCCCcceEEEEeeCCcEEEEeccCCeEE
Confidence 345688999877777766 5788999998741 111111 1111223456788765536666556678899
Q ss_pred EEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe--C-CeEEEEEccCCCCceeeeeecccc
Q 010256 309 LIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y-MTLKLWDINMDSGPVATFQVHEHL 385 (514)
Q Consensus 309 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~-~~i~iwd~~~~~~~~~~~~~~~~~ 385 (514)
++++..... ..+-.. .......++++|.+.+|+..+ . +.|..+++. +.....+......
T Consensus 479 v~d~dg~~~-----~~l~~~-----------~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~d--G~~~~~l~~~~l~ 540 (699)
T 1n7d_A 479 VADTKGVKR-----KTLFRE-----------QGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--GVDIYSLVTENIQ 540 (699)
T ss_dssp EEBSSSCCE-----EEECCC-----------SSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSS--SCCCCEESCSSCS
T ss_pred EEecCCCce-----EEEEeC-----------CCCCcceEEEccCCCcEEEcccCCCCeEEEEeCC--CCCeeEEEeCCCC
Confidence 998865432 111100 012456788998766555533 2 677777765 3322222111000
Q ss_pred ccccccccccCCccceeeEEEcCCCCEEE-EEeCCCcEEEEecCCCceeeeeec--CCCcceeEEEECCCCCceeecCCC
Q 010256 386 RPKLCDLYENDSIFDKFECCLSGDGGRVA-TGSYSNLFRVFGCSEGSAESTTLE--ASKNPMRRQVQTPSRPSRPLGSLS 462 (514)
Q Consensus 386 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~s~d 462 (514)
.-..++|+|++..|+ +-+..+.|..+++... .....+. ........+++..+ .++.+....
T Consensus 541 --------------~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~ 604 (699)
T 1n7d_A 541 --------------WPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFED-KVFWTDIIN 604 (699)
T ss_dssp --------------SCCCEEECTTTCCEEEEETTTTEEEEECSSSS-CCEEECCCSSSCSSCCCCEEETT-EEEEECSTT
T ss_pred --------------CccEEEEeccCCEEEEEecCCCeEEEEccCCC-ceEEEEecCCcCCCceEeEEECC-EEEEEeCCC
Confidence 011799998765544 4456678999998643 2222222 11222334555443 344444455
Q ss_pred CeEEE
Q 010256 463 GVVRR 467 (514)
Q Consensus 463 ~~v~i 467 (514)
+.|..
T Consensus 605 ~~V~~ 609 (699)
T 1n7d_A 605 EAIFS 609 (699)
T ss_dssp TCEEE
T ss_pred CeEEE
Confidence 55555
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.27 Score=44.37 Aligned_cols=156 Identities=7% Similarity=0.117 Sum_probs=87.4
Q ss_pred ccCeEEEEECC--CCC-EEEEe--c--CCeEEEEeccCCCceeeeeccCCCcccc-cCCceEEEEEecCCCcEEEEEec-
Q 010256 233 DYHINSISNNS--DGE-TFISA--D--DLRINLWNLEISNQSFNIVDVKPANMED-LTEVITSAEFHPTHCNMLAYSSS- 303 (514)
Q Consensus 233 ~~~v~~~~~~~--~~~-~l~s~--~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~v~~~p~~~~~l~~~~~- 303 (514)
......+.+.+ ++. +|..+ . +.+|.+|+++........+. ++.+ .-...+.+++.++| .++++...
T Consensus 111 ~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~----~~~g~~~~~pND~~v~~~G-~fyvt~~~~ 185 (355)
T 3sre_A 111 SFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLK----TIRHKLLPSVNDIVAVGPE-HFYATNDHY 185 (355)
T ss_dssp GCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEE----EECCTTCSSEEEEEEEETT-EEEEEESCS
T ss_pred ceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEe----ccccCCCCCCceEEEeCCC-CEEecCCcE
Confidence 34667777755 454 34443 2 67888988875443333221 1221 23457899999998 66665431
Q ss_pred ----------------CCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC--CeEE
Q 010256 304 ----------------KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLK 365 (514)
Q Consensus 304 ----------------dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~ 365 (514)
.|.|..+|. ++. +. +.......+.++|+||++.|+.++. +.|.
T Consensus 186 ftd~~~~~~e~~~~~~~g~vyr~d~--~~~-----~~------------~~~~l~~pNGia~spDg~~lYvadt~~~~I~ 246 (355)
T 3sre_A 186 FIDPYLKSWEMHLGLAWSFVTYYSP--NDV-----RV------------VAEGFDFANGINISPDGKYVYIAELLAHKIH 246 (355)
T ss_dssp CSSHHHHHHHHHTTCCCEEEEEECT--TCC-----EE------------EEEEESSEEEEEECTTSSEEEEEEGGGTEEE
T ss_pred eCCcccccchhhccCCccEEEEEEC--CeE-----EE------------eecCCcccCcceECCCCCEEEEEeCCCCeEE
Confidence 133333333 211 11 1111245788999999998888753 8999
Q ss_pred EEEccCCCCce--eeeeeccccccccccccccCCccceeeEEEcC-CCCEEEEEeCC-CcEEEEecC
Q 010256 366 LWDINMDSGPV--ATFQVHEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATGSYS-NLFRVFGCS 428 (514)
Q Consensus 366 iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d-g~i~iwd~~ 428 (514)
.|++...+... ..+.. ... .-.+++.+ +|++.+++..+ ++|..|+..
T Consensus 247 ~~~~~~~g~l~~~~~~~~-~g~---------------PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 247 VYEKHANWTLTPLRVLSF-DTL---------------VDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp EEEECTTSCEEEEEEEEC-SSE---------------EEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred EEEECCCCcEecCEEEeC-CCC---------------CceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 99997433321 11111 010 01688898 59988766544 345445443
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.32 Score=43.42 Aligned_cols=111 Identities=14% Similarity=0.126 Sum_probs=65.1
Q ss_pred cCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCC-ceeeeeccCCC
Q 010256 199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISN-QSFNIVDVKPA 276 (514)
Q Consensus 199 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~-~~~~~~~~~~~ 276 (514)
++...++.+..|++..........+..+.+.. .+.+..+...+....|..+ ++.-|..++.+-.. ....++..-
T Consensus 147 fV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l--gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~-- 222 (355)
T 3amr_A 147 MVTGKEGEFEQYELKADKNGYISGKKVRAFKM--NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRA-- 222 (355)
T ss_dssp EEECSSSEEEEEEEEECTTSCEEEEEEEEEEC--SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEB--
T ss_pred EEECCCCeEEEEEEEeCCCCcccceEEEEecC--CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEe--
Confidence 77777899999995443333334444455422 3568888899888888888 77666666644221 011111100
Q ss_pred cccccCCceEEEEEe--cCCCcEEEEEe-cCCeEEEEEcC
Q 010256 277 NMEDLTEVITSAEFH--PTHCNMLAYSS-SKGSIRLIDMR 313 (514)
Q Consensus 277 ~~~~~~~~i~~v~~~--p~~~~~l~~~~-~dg~i~~wd~~ 313 (514)
........+..|++. +++..+|++++ .+..+.+||..
T Consensus 223 ~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 223 DGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp SSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred cCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 112223457788774 55422455555 57799999986
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=96.66 E-value=0.91 Score=48.33 Aligned_cols=43 Identities=12% Similarity=0.087 Sum_probs=31.6
Q ss_pred ccceeEEEEeeCCC----CcEEEEeeC-CCeEEEEEcCccEEEEEeec
Q 010256 112 EEKINKIRWCQSAN----SALYLLSTN-DKTIKLWKVQEKKVKKVFDW 154 (514)
Q Consensus 112 ~~~v~~i~~~~~~~----~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~ 154 (514)
+..|.|+++.|.++ +.+++.|.. |++++|+++.+.+......+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L 600 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEML 600 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEEC
Confidence 36699999865443 468899986 99999999987665544443
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.08 Score=43.50 Aligned_cols=141 Identities=4% Similarity=-0.137 Sum_probs=80.7
Q ss_pred ceeEEEEecCCCEEEEEeCCeEEEEEccCCCCce-----eeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe
Q 010256 343 SISDIKFARNGRHILSRDYMTLKLWDINMDSGPV-----ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 417 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 417 (514)
.+..++|+|+|.+.++ .++.+.-.+..+ .... .+..+..... . --.+.|.|+|.+.++
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t-~~~~~W~~s~t~IG~~Gw~---------~----F~a~~fD~~G~LYav-- 104 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPT-HDNDNWMGRAKKIGNGGWN---------Q----FQFLFFDPNGYLYAV-- 104 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCC-STTCCHHHHCEEEECSCGG---------G----CSEEEECTTSCEEEE--
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCC-CCcccccccccEecccccc---------c----ceEEEECCCCCEEEe--
Confidence 6789999999997777 667755544432 1110 1111111110 0 117899999998887
Q ss_pred CCCcEEEEecCCCceee------eeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCcc--c-c-CCccc--cc
Q 010256 418 YSNLFRVFGCSEGSAES------TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSAL--D-A-NGNAF--DF 485 (514)
Q Consensus 418 ~dg~i~iwd~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~--~-~-~~~~~--~~ 485 (514)
.||.|+-++..+..... .+-.+--..+..+.+.|+|.+.+.. |+.+.- ...+... . + ....+ +.
T Consensus 105 ~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr--~~~P~~~~~~wl~~~~~~g~~g 180 (236)
T 1tl2_A 105 SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYK--ALPPVSNQDNWLARATKIGQGG 180 (236)
T ss_dssp ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEE--ECCCSSTTCCHHHHCEEEESSS
T ss_pred CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEe--cCCCCCCCcccccccceeccCC
Confidence 56999888764422211 1111222467889999999988887 666543 2222110 0 0 00111 12
Q ss_pred ccceEEEEEcCCCCEEEEE
Q 010256 486 SMKLLHLAWHPSENSIACA 504 (514)
Q Consensus 486 ~~~v~~~~~spd~~~l~~~ 504 (514)
....+.+.|.|++.+.++.
T Consensus 181 ~~~yr~l~f~~~G~l~~v~ 199 (236)
T 1tl2_A 181 WDTFKFLFFSSVGTLFGVQ 199 (236)
T ss_dssp GGGEEEEEECTTSCEEEEE
T ss_pred cceEEEEEECCCCcEEEEe
Confidence 2345668899999998887
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.15 Score=46.67 Aligned_cols=126 Identities=11% Similarity=0.190 Sum_probs=79.8
Q ss_pred CeEEEEECCCCCEEEEecCCeEEEEeccCCCcee-----------eeeccCCCcccccCCceEEEEEecCCC--cEEEEE
Q 010256 235 HINSISNNSDGETFISADDLRINLWNLEISNQSF-----------NIVDVKPANMEDLTEVITSAEFHPTHC--NMLAYS 301 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~-----------~~~~~~~~~~~~~~~~i~~v~~~p~~~--~~l~~~ 301 (514)
.|..+..+|+|++||...+..|.+-.+..+.... +.+.+.+.. .....+|..+.|||-+. ..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~-~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEE-VGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC---CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcc-cCCCCceeEEEeccccCCCCeEEEE
Confidence 5677999999999999888899998887332111 111111111 11357899999999753 489999
Q ss_pred ecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe--C-CeEEEE
Q 010256 302 SSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y-MTLKLW 367 (514)
Q Consensus 302 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~-~~i~iw 367 (514)
..|+.|++||+..... .+. .++... ...-+......|.+++|.+++-.|.... + |.|+-.
T Consensus 146 tsD~~Ir~yDl~~s~~--~P~-~L~k~~---~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 146 KEDDTITMFDILNSQE--KPI-VLNKPN---NSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ETTSCEEEEETTCTTS--CCE-EESCCC---SEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ecCCEEEEEEcccCCC--CCc-chhccc---cccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 9999999999986321 112 222110 0001122335789999999888777643 4 777553
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.57 Score=42.04 Aligned_cols=115 Identities=11% Similarity=0.085 Sum_probs=64.5
Q ss_pred cCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecC---CCcEEEEEe--cCCeE
Q 010256 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSS--SKGSI 307 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~---~~~~l~~~~--~dg~i 307 (514)
...+.|+|.|+|.++++- ..|.|++++...+... .+. ..+............|+++|+ +..++++-+ .++.|
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~-~v~-~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKT-ELG-EVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-EEE-ECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEe-eec-ccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 456899999999988888 5999999986543321 111 111122234567899999995 214444322 34556
Q ss_pred EEEEcCCCc----cccccccceeccCCCCccceeeccccceeEEEEecCCCEEEE
Q 010256 308 RLIDMRQSA----LCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 358 (514)
Q Consensus 308 ~~wd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 358 (514)
.-|.+..+. ........+..... -..| .-..|+|.|||.+.++
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~------~~~H--~g~~l~fgpDG~Lyvt 156 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPK------GVIH--NGGRIAFGPDKMLYAG 156 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECC------CSSC--CCCCEEECTTSCEEEE
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCC------CCCc--cCccccCCCCCCEEEE
Confidence 666655421 11110111111000 0122 3567999999988777
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=1 Score=44.39 Aligned_cols=142 Identities=11% Similarity=-0.059 Sum_probs=79.4
Q ss_pred ceeEEEEecCCCEEEEEe--CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCC-EEEEEeCC
Q 010256 343 SISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYS 419 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d 419 (514)
.+.+++|.+.+..|+..+ .+.|..+++.. .....+.... . .....+++.+.++ ++++-+..
T Consensus 350 ~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g--~~~~~v~~~~-~-------------~~p~GlAvD~~~~~lY~tD~~~ 413 (619)
T 3s94_A 350 HAIAIDYDPVEGYIYWTDDEVRAIRRSFIDG--SGSQFVVTAQ-I-------------AHPDGIAVDWVARNLYWTDTGT 413 (619)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEECSS-C-------------SCCCEEEEETTTTEEEEEETTT
T ss_pred ccEEEEEEcCCCeEEEEeCCCCeEEEEEcCC--CccEEEEECC-C-------------CCcCceEEecccCcEEEEeCCC
Confidence 467899998666666554 38888888863 2222222111 0 0012788887554 55555567
Q ss_pred CcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecC--CCCeEEE--eeCCCCCccccCCcccccccceEEEEEc
Q 010256 420 NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGS--LSGVVRR--VKGADNSALDANGNAFDFSMKLLHLAWH 495 (514)
Q Consensus 420 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s--~d~~v~i--~~~~~~~~~~~~~~~~~~~~~v~~~~~s 495 (514)
+.|.+.++... .....+.......+.+++.|...+|.... ....|.. .+|.... .+.. +.-...+.|+++
T Consensus 414 ~~I~v~~~~G~-~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~--~l~~---~~l~~P~GlalD 487 (619)
T 3s94_A 414 DRIEVTRLNGT-MRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRV--VLVN---TSLGWPNGLALD 487 (619)
T ss_dssp TEEEEEETTSC-SCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE--EEEC---SSCSCEEEEEEE
T ss_pred CcEEEEeCCCC-eEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccE--EEEe---CCCCCCeeeEEc
Confidence 88999998754 22233334456678999998744443332 2244444 2332211 0110 113456788888
Q ss_pred CCCCEEEEEec
Q 010256 496 PSENSIACAAS 506 (514)
Q Consensus 496 pd~~~l~~~~~ 506 (514)
+++..|..+..
T Consensus 488 ~~~~~LY~aD~ 498 (619)
T 3s94_A 488 YDEGKIYWGDA 498 (619)
T ss_dssp TTTTEEEEEET
T ss_pred ccCCEEEEEEC
Confidence 87777766553
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.77 Score=42.15 Aligned_cols=162 Identities=14% Similarity=0.149 Sum_probs=90.5
Q ss_pred CCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEe-------cCCeEEEEEcCCCcc
Q 010256 245 GETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-------SKGSIRLIDMRQSAL 317 (514)
Q Consensus 245 ~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-------~dg~i~~wd~~~~~~ 317 (514)
.+.|+-..+..|+-|++.......++++.. ..+. ...|..-..+++. ++++..+ -.|.+.+|..+.+.
T Consensus 116 ~~~l~lVT~taVyHWsi~~~s~P~kvFdR~-~~L~--~~QIInY~~d~~~-kW~~l~GI~~~~~~v~G~mQLYS~er~~- 190 (494)
T 1bpo_A 116 LNTVALVTDNAVYHWSMEGESQPVKMFDRH-SSLA--GCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAMQLYSVDRKV- 190 (494)
T ss_dssp TTEEEEECSSEEEEEESSSSCCCEEEEECC-GGGT--TCEEEEEEECTTS-SEEEEEEEEEETTEEEEEEEEEESTTCC-
T ss_pred CCeEEEEcCCeeEEecccCCCCchhheecc-hhcc--cceEEEEEECCCC-CeEEEEeecccCCcccceEEEeeccccc-
Confidence 345666678899999998544555544322 1232 5678888889988 6655333 23667788776543
Q ss_pred ccccccceeccCCCCccceeeccccceeEEEEecCC---CEEEEEe----CCeEEEEEccCCCCceeeeeeccccccccc
Q 010256 318 CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG---RHILSRD----YMTLKLWDINMDSGPVATFQVHEHLRPKLC 390 (514)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g---~~l~~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 390 (514)
.+. +.||.+....+.+..+. .++..+. .++++|.++..+...-..+... ..
T Consensus 191 ----sQ~------------ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk------~v 248 (494)
T 1bpo_A 191 ----SQP------------IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKK------AV 248 (494)
T ss_dssp ----EEE------------ECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCE------EE
T ss_pred ----cch------------heeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccce------ee
Confidence 222 34444444333332111 1222232 2789999986521111111100 00
Q ss_pred c-ccccCCccce-eeEEEcCCCCEEEEEeCCCcEEEEecCCCcee
Q 010256 391 D-LYENDSIFDK-FECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 391 ~-~~~~~~~~~v-~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
+ ++..+...|. .++..|+.-..+..-+.-|.|++||++++.++
T Consensus 249 dv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i 293 (494)
T 1bpo_A 249 DVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 293 (494)
T ss_dssp ECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred eeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceee
Confidence 0 0111111111 16778888888888899999999999999655
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.59 Score=41.20 Aligned_cols=124 Identities=7% Similarity=0.000 Sum_probs=68.7
Q ss_pred EEEecCCCEEEEEe---CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeC-CCcE
Q 010256 347 IKFARNGRHILSRD---YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY-SNLF 422 (514)
Q Consensus 347 ~~~s~~g~~l~~~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i 422 (514)
..|+++++.|+-.+ ++.-.||.+...+.....+..+. ..+|+++++.|+-.+. ...|
T Consensus 109 ~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~-------------------~~~~~~~g~~iy~t~~g~~~I 169 (302)
T 3s25_A 109 IYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHY-------------------LFTCNTSDRYFYYNNPKNGQL 169 (302)
T ss_dssp EEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSC-------------------CCCSEEETTEEEEECTTTCCE
T ss_pred cEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCC-------------------ceEeeEECCEEEEEeCCCceE
Confidence 36788899888765 34445555544355555554432 1235678888775554 5678
Q ss_pred EEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCC--eEEE--eeCCCCCccccCCcccccccceEEEEEcCCC
Q 010256 423 RVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSG--VVRR--VKGADNSALDANGNAFDFSMKLLHLAWHPSE 498 (514)
Q Consensus 423 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~--~v~i--~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~ 498 (514)
+.-++..+... ..+.+ ... ..+.|++++|+-...+. .|.. ++|.... .+. ...+ ..|+|++
T Consensus 170 y~~~l~g~~~~-~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~--~Lt------~~~~--~~~~~~g 234 (302)
T 3s25_A 170 YRYDTASQSEA-LFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPV--VLT------EANI--EHYNVYG 234 (302)
T ss_dssp EEEETTTTEEE-EEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCE--ECS------CSCE--EEEEEET
T ss_pred EEEECCCCCEE-EEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeE--EEe------CCCc--ceEEECC
Confidence 88888765332 23332 222 23558888887665443 3444 3333322 111 1222 3478888
Q ss_pred CEEEEE
Q 010256 499 NSIACA 504 (514)
Q Consensus 499 ~~l~~~ 504 (514)
++|..+
T Consensus 235 ~~Iy~~ 240 (302)
T 3s25_A 235 SLIFYQ 240 (302)
T ss_dssp TEEEEE
T ss_pred CEEEEE
Confidence 888755
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.91 Score=41.11 Aligned_cols=118 Identities=9% Similarity=0.051 Sum_probs=60.7
Q ss_pred cCeEEEEECCCCC-EEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecC---CCcEEEEEec------
Q 010256 234 YHINSISNNSDGE-TFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPT---HCNMLAYSSS------ 303 (514)
Q Consensus 234 ~~v~~~~~~~~~~-~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~---~~~~l~~~~~------ 303 (514)
.....|+|.|+|+ ++++-..|.|++++.. +... ..+.-.+............++++|+ +..++++-+.
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~-~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLS-APLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEEC-CCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-Ccee-eEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 3567999999999 7766677999999854 2211 1111011111223456789999995 3245554333
Q ss_pred -CCeEEEEEcCCCcc-ccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE
Q 010256 304 -KGSIRLIDMRQSAL-CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR 359 (514)
Q Consensus 304 -dg~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 359 (514)
...|..|++..... .......+..... ..-..| ....++|.|||.+.++-
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~----~~~~~h--~~~~l~~~pdG~Lyv~~ 147 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPK----LSTGNH--FGGRLVFDGKGYLFIAL 147 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSC----CBSSSC--CCCCEEECSSSEEEEEE
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCC----CCCCcc--cCccEEECCCCcEEEEE
Confidence 23566666643311 0000011111000 000112 23579999999766663
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.56 Score=38.60 Aligned_cols=156 Identities=7% Similarity=-0.099 Sum_probs=81.5
Q ss_pred ceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCcccee--eccccceeEEEEecCCCEEEEEeC
Q 010256 284 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFF--TEIIASISDIKFARNGRHILSRDY 361 (514)
Q Consensus 284 ~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~g~~l~~~~~ 361 (514)
.+..++|+|+| .+.++ .+|.+.-.+..+... ..+-... ..+ .+- ....++.|.|+|.+.++ ++
T Consensus 42 ~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~-----~~W~~s~-----t~IG~~Gw-~~F~a~~fD~~G~LYav-~d 106 (236)
T 1tl2_A 42 NFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDN-----DNWMGRA-----KKIGNGGW-NQFQFLFFDPNGYLYAV-SK 106 (236)
T ss_dssp TCSEEEECTTS-CEEEE--ETTEEEEESCCCSTT-----CCHHHHC-----EEEECSCG-GGCSEEEECTTSCEEEE-ET
T ss_pred cceeEEECCCc-cEEEE--eCCeEEEECCCCCCc-----ccccccc-----cEeccccc-ccceEEEECCCCCEEEe-CC
Confidence 56799999988 66665 777766555543221 1111100 000 011 11478999999998888 77
Q ss_pred CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCce-----eeee
Q 010256 362 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA-----ESTT 436 (514)
Q Consensus 362 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~ 436 (514)
|.|.-++-.+.+.. ........+ ....-.++..+.|.|+|.+.+.. |+.++-+...++.. ....
T Consensus 107 G~iyr~~pP~~~~~--~Wl~~a~~v-------g~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~ 175 (236)
T 1tl2_A 107 DKLYKASPPQSDTD--NWIARATEV-------GSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATK 175 (236)
T ss_dssp TEEEEESCCCSTTC--CHHHHSEEE-------ECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEE
T ss_pred CEEEEeCCCcCCCC--ceeccccEe-------ccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccce
Confidence 88876654321111 110000000 00000123489999999988776 77765443332211 0111
Q ss_pred ec-CCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 437 LE-ASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 437 ~~-~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+- .....-+-+.|.+++.+.+.. ++.+..
T Consensus 176 ~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y~ 205 (236)
T 1tl2_A 176 IGQGGWDTFKFLFFSSVGTLFGVQ--GGKFYE 205 (236)
T ss_dssp EESSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred eccCCcceEEEEEECCCCcEEEEe--CCeEEe
Confidence 21 223334456688888877666 665555
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=1.5 Score=43.28 Aligned_cols=153 Identities=11% Similarity=-0.021 Sum_probs=89.9
Q ss_pred eEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEE-ecCCeEEEEEc
Q 010256 236 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS-SSKGSIRLIDM 312 (514)
Q Consensus 236 v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~-~~dg~i~~wd~ 312 (514)
...+++++.+..|..+ ..+.|.+.+++... ...++ ...-.....++++|..+.++.+- +..+.|...++
T Consensus 82 P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~-~~~l~-------~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~ 153 (628)
T 4a0p_A 82 PEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH-RQVLV-------WKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAM 153 (628)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSTT-CEEEE-------CSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred cceEEEEeCCCEEEEEECCCCEEEEEecCCCc-EEEEE-------eCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeC
Confidence 4578888766655555 57889999987332 21111 12234578999999653444443 12567888887
Q ss_pred CCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC--CeEEEEEccCCCCceeeeeeccccccccc
Q 010256 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKLC 390 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 390 (514)
..... ..+- ........+++++++..|+.++. +.|..+|+.. .....+...-..
T Consensus 154 dG~~~-----~~l~------------~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG--~~~~v~~~~l~~----- 209 (628)
T 4a0p_A 154 DGSER-----TTLV------------PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG--LNREVIADDLPH----- 209 (628)
T ss_dssp TSCSC-----EEEE------------CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEEECCSC-----
T ss_pred CCCce-----EEEE------------CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCC--CceEEeeccCCC-----
Confidence 65432 1111 01145788999998888877653 8899999874 222333211110
Q ss_pred cccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCc
Q 010256 391 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGS 431 (514)
Q Consensus 391 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 431 (514)
-+.+++.. +.++++-...+.|...|..+++
T Consensus 210 ----------P~glav~~-~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 210 ----------PFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp ----------EEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred ----------ceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence 12666654 4444454457788888876664
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=95.90 E-value=0.66 Score=43.70 Aligned_cols=116 Identities=11% Similarity=0.083 Sum_probs=62.8
Q ss_pred cCeEEEEECCCCCEEEEec-CCeEEEEeccCCCceeeeeccCCCccc--ccCCceEEEEEecC---CCcEEEEEec----
Q 010256 234 YHINSISNNSDGETFISAD-DLRINLWNLEISNQSFNIVDVKPANME--DLTEVITSAEFHPT---HCNMLAYSSS---- 303 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~i~~v~~~p~---~~~~l~~~~~---- 303 (514)
...+.|+|.|+|+++++-. .+.|++++...+.. ..+..+.. .+. .....+..|+|+|+ +..+.++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~-~~~~~~~~-~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSV-KTVFQVPE-IVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEEEECTT-CCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE-eEEecCCc-cccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 3567999999999888874 45788887653332 12211111 111 13567889999995 4244444432
Q ss_pred --------CCeEEEEEcCCCcc-ccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE
Q 010256 304 --------KGSIRLIDMRQSAL-CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR 359 (514)
Q Consensus 304 --------dg~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 359 (514)
...|.-|++..... .......+.... .........++|.|||.+.++.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p--------~~~~H~~~~l~f~pDG~Lyv~~ 161 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLP--------SSKDHQSGRLVIGPDQKIYYTI 161 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEEC--------CCSSCCEEEEEECTTSCEEEEE
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCC--------CCCCCCCCeEeECCCCeEEEEE
Confidence 23555555543211 000011111100 0011247889999999987774
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.98 Score=40.89 Aligned_cols=56 Identities=9% Similarity=-0.032 Sum_probs=34.2
Q ss_pred eEEEcCCCCEEEEEeCCCcEEEEecCCCcee-----eeeecCCCcceeEEEECCCCCceeec
Q 010256 403 ECCLSGDGGRVATGSYSNLFRVFGCSEGSAE-----STTLEASKNPMRRQVQTPSRPSRPLG 459 (514)
Q Consensus 403 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~s~ 459 (514)
.++| .+|.++++.-..+.|...+++..... ...+-.....+..+++.|||.++++.
T Consensus 272 G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~ 332 (352)
T 2ism_A 272 NLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTT 332 (352)
T ss_dssp EEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEE
T ss_pred ceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEE
Confidence 5677 46776666656677887777643210 11111223567889999998766654
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=1.4 Score=39.88 Aligned_cols=27 Identities=33% Similarity=0.429 Sum_probs=21.1
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEE
Q 010256 36 DIISAIEFDKSGDHLATGDRGGRVVLFE 63 (514)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg~i~iw~ 63 (514)
.....|+|.|+|+++++ ..+|.|++++
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d 55 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGRLVLIS 55 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTEEEEEC
T ss_pred CCCeEEEEcCCCeEEEE-eCCCEEEEEe
Confidence 45679999999985555 5669998886
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=94.92 E-value=2 Score=38.52 Aligned_cols=33 Identities=9% Similarity=0.083 Sum_probs=25.7
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEEecCC
Q 010256 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDT 67 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~ 67 (514)
-..-..|+|.|||.++++-...|.|++++..++
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g 63 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTG 63 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCC
Confidence 356789999999998877655899988875443
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=94.85 E-value=3.9 Score=41.52 Aligned_cols=247 Identities=13% Similarity=0.034 Sum_probs=125.5
Q ss_pred cCeEEEEECCCCCEEEEecCCeEEEEeccCCCc-eeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEc
Q 010256 234 YHINSISNNSDGETFISADDLRINLWNLEISNQ-SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~ 312 (514)
..|.++.-..+|.+-+...+| +..++..++.. .............-....|.++.-..++ ++. .|+ ++-+..||.
T Consensus 324 ~~v~~i~~D~~g~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~lW-igt-~~GL~~~~~ 399 (758)
T 3ott_A 324 NQFYSLFRDSKGFYWFGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQ-QLW-IAT-DGSINRYDY 399 (758)
T ss_dssp CBEEEEEECTTCCEEEEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTS-CEE-EEE-TTEEEEEET
T ss_pred ceEEEEEEcCCCCEEEeeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCC-CEE-EEe-CCcHhhcCc
Confidence 468888888888776655544 66666543211 1111100000000123468888888877 444 455 467889998
Q ss_pred CCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCC----CCcee---eeeecccc
Q 010256 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMD----SGPVA---TFQVHEHL 385 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~----~~~~~---~~~~~~~~ 385 (514)
.+++.. .+....... ......|.++...++|.+.+....+-|.++|.... ..... .+......
T Consensus 400 ~~~~~~-----~~~~~~~~~-----~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l 469 (758)
T 3ott_A 400 ATRQFI-----HYNIVDNTG-----TYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGL 469 (758)
T ss_dssp TTTEEE-----EEEEECCC-------CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTC
T ss_pred CCCcEE-----EeecCCCcC-----CCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceeccccccccccc
Confidence 776531 121100000 00124588888887777666444466888886520 01110 11111110
Q ss_pred ccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecC--C--CcceeEEEECCCCCceeecCC
Q 010256 386 RPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEA--S--KNPMRRQVQTPSRPSRPLGSL 461 (514)
Q Consensus 386 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~--~~~v~~~~~~~~~~~l~s~s~ 461 (514)
... .|.++...++|++.+.++..+-|..+|..+++.. .+.. . ...+.++....+|.+.+.. .
T Consensus 470 --------~~~---~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~--~~~~~~~~~~~~~~~i~~d~~g~lWigt-~ 535 (758)
T 3ott_A 470 --------SGM---FINQIIPDNEGNVWVLLYNNKGIDKINPRTREVT--KLFADELTGEKSPNYLLCDEDGLLWVGF-H 535 (758)
T ss_dssp --------SCS---CEEEEEECTTSCEEEEETTCSSEEEEETTTTEEE--EECTTTSCGGGCEEEEEECTTSCEEEEE-T
T ss_pred --------ccc---eeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceE--EecCCCcCCCcccceEEECCCCCEEEEe-c
Confidence 011 2447888888987764444456888898765322 2211 1 2356777777888766544 4
Q ss_pred CCeEEE-eeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecCcEEEEe
Q 010256 462 SGVVRR-VKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 462 d~~v~i-~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~i~~ 513 (514)
.|-.++ ........ +....+ ....|.++... +| .|..++.+++..|.
T Consensus 536 ~Gl~~~~~~~~~~~~--~~~~gl-~~~~i~~i~~~-~g-~lWi~t~~Gl~~~~ 583 (758)
T 3ott_A 536 GGVMRINPKDESQQS--ISFGSF-SNNEILSMTCV-KN-SIWVSTTNGLWIID 583 (758)
T ss_dssp TEEEEECC--CCCCB--CCCCC----CCEEEEEEE-TT-EEEEEESSCEEEEE
T ss_pred CceEEEecCCCceEE--ecccCC-CccceEEEEEC-CC-CEEEECCCCeEEEc
Confidence 565555 11111111 100001 13457777653 44 46666677777664
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=94.79 E-value=1.7 Score=40.96 Aligned_cols=33 Identities=9% Similarity=0.167 Sum_probs=23.1
Q ss_pred CceEEEEEecCCCcEEEEEecCCeEEEEEcCCCc
Q 010256 283 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA 316 (514)
Q Consensus 283 ~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~ 316 (514)
...+.++|.|+| +++++-...+.|++++..++.
T Consensus 27 ~~P~~~a~~pdG-~l~V~e~~gg~I~~~~~~~g~ 59 (454)
T 1cru_A 27 NKPHALLWGPDN-QIWLTERATGKILRVNPESGS 59 (454)
T ss_dssp SSEEEEEECTTS-CEEEEETTTCEEEEECTTTCC
T ss_pred CCceEEEEcCCC-cEEEEEcCCCEEEEEECCCCc
Confidence 356799999999 766654444578888765443
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=94.32 E-value=2.9 Score=37.75 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=22.0
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEEe
Q 010256 36 DIISAIEFDKSGDHLATGDRGGRVVLFER 64 (514)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg~i~iw~~ 64 (514)
.....|+|.|+|++|+.+...|.|++++.
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~ 46 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQA 46 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEET
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeC
Confidence 45689999999983444456799998884
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=94.02 E-value=4.5 Score=43.47 Aligned_cols=161 Identities=13% Similarity=0.156 Sum_probs=85.2
Q ss_pred CCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEe-------cCCeEEEEEcCCCcc
Q 010256 245 GETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-------SKGSIRLIDMRQSAL 317 (514)
Q Consensus 245 ~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-------~dg~i~~wd~~~~~~ 317 (514)
.+.|+-..+..|+.|++.....+.++++.. .++. ...|..-..+++. ++++..+ -.|.+.+|..+.+.
T Consensus 116 ~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~-~~L~--~~QIinY~~d~~~-kW~~l~gi~~~~~~v~G~mQLyS~er~~- 190 (1630)
T 1xi4_A 116 LNTVALVTDNAVYHWSMEGESQPVKMFDRH-SSLA--GCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAMQLYSVDRKV- 190 (1630)
T ss_pred CCeeEEEcCCeEEEeccCCCCccHHHHhcc-hhcc--cCeeEEeeeCCCC-CeEEEEeeccCCCcccceeeeeeccccc-
Confidence 345555577889999997433333332211 1222 4667777888888 5555333 34778888876543
Q ss_pred ccccccceeccCCCCccceeeccccceeEEEEec---CCCEEEEEe----CCeEEEEEccCCCCceeeeeeccccccccc
Q 010256 318 CDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR---NGRHILSRD----YMTLKLWDINMDSGPVATFQVHEHLRPKLC 390 (514)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~---~g~~l~~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 390 (514)
.+. +.||.+....+.... ...++..+. .++++|-++..+...-..+... ..
T Consensus 191 ----sQ~------------iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk------~~ 248 (1630)
T 1xi4_A 191 ----SQP------------IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKK------AV 248 (1630)
T ss_pred ----chh------------hhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccc------cc
Confidence 222 333333333333321 112222221 2789998886520111111100 00
Q ss_pred c-ccccCCc--cceeeEEEcCCCCEEEEEeCCCcEEEEecCCCcee
Q 010256 391 D-LYENDSI--FDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 391 ~-~~~~~~~--~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
+ ++..+.. ++| ++..++.-..+..-+.-|.+++||+.++..+
T Consensus 249 ~~~~~~~~~~Dfpv-~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i 293 (1630)
T 1xi4_A 249 DVFFPPEAQNDFPV-AMQISEKHDVVFLITKYGYIHLYDLETGTCI 293 (1630)
T ss_pred cccCCcccccCcce-EEEeccccCEEEEEecCceEEEEecccchhh
Confidence 0 0111111 111 5777877778888889999999999998554
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=92.47 E-value=6 Score=35.85 Aligned_cols=158 Identities=9% Similarity=0.058 Sum_probs=80.7
Q ss_pred eEEEEeccCCC-ceeeeeccCCCcccccCCceEEEEEe---cC---CCcEEEEEe-cCCeEEEEEcCCCcccccccccee
Q 010256 255 RINLWNLEISN-QSFNIVDVKPANMEDLTEVITSAEFH---PT---HCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFE 326 (514)
Q Consensus 255 ~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~i~~v~~~---p~---~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~ 326 (514)
.|.+||+.+.. +.++.+.+.+.... ....+..+++. |. +..+++.+. ..+.|.++|+.+++.. +...
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~-~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~sw----Rv~~ 198 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVE-KPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSW----NVTH 198 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCC-CGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEE----EEEC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcc-cCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEE----EEcc
Confidence 45566766551 23333333222222 24568888887 22 113444343 4678999999988752 1111
Q ss_pred ccCCCCc--cceeecc----ccceeEEEEecC----CCEEEEEeCCeEEEEEccC----CCCceeee--eeccccccccc
Q 010256 327 EQEAPGT--RSFFTEI----IASISDIKFARN----GRHILSRDYMTLKLWDINM----DSGPVATF--QVHEHLRPKLC 390 (514)
Q Consensus 327 ~~~~~~~--~~~~~~~----~~~i~~~~~s~~----g~~l~~~~~~~i~iwd~~~----~~~~~~~~--~~~~~~~~~~~ 390 (514)
..-.+.. .....+. ...+..++++|+ ++.|+-..-..-++|.+.+ .......+ .+..+.
T Consensus 199 ~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~----- 273 (381)
T 3q6k_A 199 PTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGK----- 273 (381)
T ss_dssp GGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCT-----
T ss_pred CCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCC-----
Confidence 1111111 1111121 247899999998 7888775432335555442 01110111 111110
Q ss_pred cccccCCccceeeEEEc-CCCCEEEEEeCCCcEEEEecCC
Q 010256 391 DLYENDSIFDKFECCLS-GDGGRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 391 ~~~~~~~~~~v~~~~~s-~~~~~l~s~~~dg~i~iwd~~~ 429 (514)
..+-..+++. .+|.++++--..+.|..|+...
T Consensus 274 -------~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 274 -------YNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp -------TCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred -------CCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 0111145675 6787777777889999999875
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=92.30 E-value=6.9 Score=36.09 Aligned_cols=165 Identities=7% Similarity=0.080 Sum_probs=91.1
Q ss_pred cCeEEEEECCCCCEEEE-e---c----CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEec--CCCcEEEEEec
Q 010256 234 YHINSISNNSDGETFIS-A---D----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP--THCNMLAYSSS 303 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s-~---~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p--~~~~~l~~~~~ 303 (514)
..|.....+++.++++. | . .|.+.+|..+..... .+++|......+.+.. ....+|+.+..
T Consensus 151 ~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ---------~ieGhaa~F~~~~~~g~~~~~~lf~fa~r 221 (494)
T 1bpo_A 151 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ---------PIEGHAASFAQFKMEGNAEESTLFCFAVR 221 (494)
T ss_dssp CEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEE---------EECCSEEEEEEEECTTCSSEEEEEEEEEC
T ss_pred ceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccc---------hheeeeeeeEEEecCCCCCCceEEEEEEe
Confidence 45677778889988774 2 1 477889998844322 3566665554444321 11134555544
Q ss_pred C---CeEEEEEcCCCc-ccccc-ccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCcee
Q 010256 304 K---GSIRLIDMRQSA-LCDTH-SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVA 377 (514)
Q Consensus 304 d---g~i~~wd~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~ 377 (514)
. +.+++.++.... -.... .+..+..-.+ ....+-.-++..|+....++.-+. |.|++||+.+ +.++.
T Consensus 222 ~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fpp------e~~~DFPvamqvs~kygviyviTK~G~i~lyDleT-gt~i~ 294 (494)
T 1bpo_A 222 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP------EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET-GTCIY 294 (494)
T ss_dssp STTCCEEEEEECSCCCTTCCCCCCEEEECCCCT------TSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT-CCEEE
T ss_pred cCCCcEEEEEEcCCCccCCCCccceeeeeeCCc------ccccCceeEEEecccCCEEEEEecCceEEEEeccc-ceeee
Confidence 3 789999985431 00000 1111111111 111245567888888777777665 9999999998 77766
Q ss_pred eeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCC
Q 010256 378 TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 429 (514)
.-+-.... |+..+-+....=++.....|.|.--.+..
T Consensus 295 ~nrIs~~~---------------iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 295 MNRISGET---------------IFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (494)
T ss_dssp EEECCSSC---------------EEEEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred eecccCCc---------------eEEecccCCCCcEEEEccCceEEEEEEcc
Confidence 55433322 22333333333444445666665555544
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=92.18 E-value=2.9 Score=39.78 Aligned_cols=105 Identities=10% Similarity=0.047 Sum_probs=66.8
Q ss_pred ceeEEEEecCCCEEEEEeC--CeEEEEEccC-----CCCc---eeeeeeccccccccccccccCCccceeeEEEcCCCCE
Q 010256 343 SISDIKFARNGRHILSRDY--MTLKLWDINM-----DSGP---VATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGR 412 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~-----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 412 (514)
....+.++|||+++++++. .++.++|++. ..+. ...+....... ..-.-.+|.++|+.
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G------------lGPlHt~Fd~~G~a 391 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG------------LGPLHTTFDGRGNA 391 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC------------SCEEEEEECSSSEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC------------CcccEEEECCCCce
Confidence 4567899999999999754 8999999874 1111 11111111100 01125799999966
Q ss_pred EEEEeCCCcEEEEecCCC---------ceeeeeecCCCcceeEEE-----ECCCCCceeec
Q 010256 413 VATGSYSNLFRVFGCSEG---------SAESTTLEASKNPMRRQV-----QTPSRPSRPLG 459 (514)
Q Consensus 413 l~s~~~dg~i~iwd~~~~---------~~~~~~~~~~~~~v~~~~-----~~~~~~~l~s~ 459 (514)
..+---|..|--|++... ......+..|..+-.-.+ -.++|++|++.
T Consensus 392 YTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~l 452 (638)
T 3sbq_A 392 YTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVAL 452 (638)
T ss_dssp EEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEE
T ss_pred EeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEe
Confidence 666778999999998642 133455666665543333 26889999886
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=91.98 E-value=12 Score=38.01 Aligned_cols=251 Identities=7% Similarity=-0.011 Sum_probs=124.9
Q ss_pred cCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcC
Q 010256 234 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMR 313 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~ 313 (514)
..|.++....+|.+-+....| +.++... . ...........-......|.++.-..+| .+. .|+.+ -+..++..
T Consensus 279 ~~i~~i~~D~~g~lWiGT~~G-l~~~~~~-~--~~~~~~~~~~~~~~~~~~v~~i~~D~~g-~lW-iGt~~-Gl~~~~~~ 351 (758)
T 3ott_A 279 NIIWNIFADQEHNIWLGTDYG-ISLSRYN-S--ALQFIPISQITGTGDGNQFYSLFRDSKG-FYW-FGGAN-GLIRFTDP 351 (758)
T ss_dssp SCEEEEEECTTCCEEEEESSS-EEEECCC-C---CEEEEHHHHSCSCCCCBEEEEEECTTC-CEE-EEETT-EEEEESCT
T ss_pred CeEEEEEEcCCCCEEEEeCCc-ccccccC-C--ceeEEecccCCCCCCCceEEEEEEcCCC-CEE-EeeCC-cceeeccc
Confidence 468899888888766655556 5444322 1 1111100000001123568888888877 444 45555 45666655
Q ss_pred CCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeecccccccccccc
Q 010256 314 QSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLY 393 (514)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (514)
++.... ...+...... ..+ ....|.++.-..+|++.+.. ++-|..||..+ + ....+....... ..
T Consensus 352 ~~~~~~--~~~~~~~~~~---~~l--~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~-~-~~~~~~~~~~~~-----~~ 416 (758)
T 3ott_A 352 AGERHD--AIWYRMGDKT---YPL--SHNRIRHIYEDKEQQLWIAT-DGSINRYDYAT-R-QFIHYNIVDNTG-----TY 416 (758)
T ss_dssp TSSCCC--CEEECTTCSS---SCC--SCSCEEEEEECTTSCEEEEE-TTEEEEEETTT-T-EEEEEEEECCC-------C
T ss_pred ccccce--eEEeccCCcC---CCC--CCCceEEEEECCCCCEEEEe-CCcHhhcCcCC-C-cEEEeecCCCcC-----CC
Confidence 432110 1111110000 000 11458888888888776654 56788999875 3 233322111100 00
Q ss_pred ccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC-----ceee--eeec---C-CCcceeEEEECCCCCcee-ecCC
Q 010256 394 ENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG-----SAES--TTLE---A-SKNPMRRQVQTPSRPSRP-LGSL 461 (514)
Q Consensus 394 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-----~~~~--~~~~---~-~~~~v~~~~~~~~~~~l~-s~s~ 461 (514)
... .|.++...++|++. .|+..+-|.++|..+. .... ..+. + ....|.++...+++.+.+ .++.
T Consensus 417 ~~~---~v~~i~~d~~g~lW-igT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~ 492 (758)
T 3ott_A 417 NTN---WTYYIFEDTAGQLW-ISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNN 492 (758)
T ss_dssp BSS---SEEEEEECTTSEEE-EEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTC
T ss_pred CCc---eEEEEEEcCCCCEE-EEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCC
Confidence 001 13467766677644 4666667888886421 1110 0111 1 123488888888888775 4555
Q ss_pred CCeEEEe-eCCCCCccccCCcccccccceEEEEEcCCCCEEEEEecCcEEEEe
Q 010256 462 SGVVRRV-KGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 462 d~~v~i~-~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~i~~ 513 (514)
.|-.++- ...+.. .+..........+.++....+|++-+ |+.++++.|.
T Consensus 493 ~Gl~~~d~~~~~~~--~~~~~~~~~~~~~~~i~~d~~g~lWi-gt~~Gl~~~~ 542 (758)
T 3ott_A 493 KGIDKINPRTREVT--KLFADELTGEKSPNYLLCDEDGLLWV-GFHGGVMRIN 542 (758)
T ss_dssp SSEEEEETTTTEEE--EECTTTSCGGGCEEEEEECTTSCEEE-EETTEEEEEC
T ss_pred CCcEEEeCCCCceE--EecCCCcCCCcccceEEECCCCCEEE-EecCceEEEe
Confidence 6666651 111111 01000111134677888777777554 4567887764
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.23 E-value=7 Score=34.03 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=17.7
Q ss_pred CCCEEEEEeCC-----CcEEEEecCCCcee
Q 010256 409 DGGRVATGSYS-----NLFRVFGCSEGSAE 433 (514)
Q Consensus 409 ~~~~l~s~~~d-----g~i~iwd~~~~~~~ 433 (514)
++++++.|+.+ ..+.+||+++.+..
T Consensus 253 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 282 (301)
T 2vpj_A 253 RGRLYAIAGYDGNSLLSSIECYDPIIDSWE 282 (301)
T ss_dssp TTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred CCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence 67777777765 45788998876543
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=90.64 E-value=11 Score=35.34 Aligned_cols=119 Identities=13% Similarity=0.107 Sum_probs=62.1
Q ss_pred cCeEEEEECCCCC--EEEEecCCeEEEEeccCCCceeeeeccCCCccc----ccCCceEEEEEecC----CCcEEEEEec
Q 010256 234 YHINSISNNSDGE--TFISADDLRINLWNLEISNQSFNIVDVKPANME----DLTEVITSAEFHPT----HCNMLAYSSS 303 (514)
Q Consensus 234 ~~v~~~~~~~~~~--~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~i~~v~~~p~----~~~~l~~~~~ 303 (514)
...+.|+|.|++. +|++-..|.|++++.........+.++...... ........|+|+|+ + .++++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~-~lYv~yt~ 92 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNG-KLYVSYTT 92 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHC-EEEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCC-EEEEEEeC
Confidence 4567899999985 666668899999975422111111111111111 12467889999996 4 44444332
Q ss_pred C------------CeEEEEEcCCCc--ccc--ccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC
Q 010256 304 K------------GSIRLIDMRQSA--LCD--THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY 361 (514)
Q Consensus 304 d------------g~i~~wd~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~ 361 (514)
+ ..|.-|.+..+. ... .....++... ....| ....|+|.|||.+.++-.+
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~------~~~~H--~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAE------LHRKH--LGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEE------SSSSS--CEEEEEECTTSCEEEEECC
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCC------CCCcc--cCCcEeECCCCcEEEEeCC
Confidence 1 134445554321 100 1011111110 01123 4678999999988777443
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=88.60 E-value=12 Score=32.77 Aligned_cols=106 Identities=9% Similarity=0.074 Sum_probs=56.0
Q ss_pred EEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC--CeEEEEEcCC
Q 010256 239 ISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK--GSIRLIDMRQ 314 (514)
Q Consensus 239 ~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d--g~i~~wd~~~ 314 (514)
.+++++++.|.-. ....|..-++.... ...+. .+... ..+.|++ ..|+-...+ ..|..-++..
T Consensus 150 ~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~-~~~l~----------~~~~~-~~~~P~g-~~iy~t~~~~~~~I~~~~ldG 216 (302)
T 3s25_A 150 FTCNTSDRYFYYNNPKNGQLYRYDTASQS-EALFY----------DCNCY-KPVVLDD-TNVYYMDVNRDNAIVHVNINN 216 (302)
T ss_dssp CCSEEETTEEEEECTTTCCEEEEETTTTE-EEEEE----------CSCEE-EEEEEET-TEEEEEEGGGTTEEEEECSSS
T ss_pred eEeeEECCEEEEEeCCCceEEEEECCCCC-EEEEe----------CCCcc-ceeeecC-CEEEEEEcCCCcEEEEEECCC
Confidence 3467788888765 35777777776333 22221 11222 3356888 566655443 3565556654
Q ss_pred CccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC---CeEEEEEccCCCCceeeee
Q 010256 315 SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY---MTLKLWDINMDSGPVATFQ 380 (514)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~---~~i~iwd~~~~~~~~~~~~ 380 (514)
... ..+.. ..+ ..|+|+++.|+-+++ ..|..-++. +.....+.
T Consensus 217 ~~~-----~~Lt~--------------~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~D--G~~r~~l~ 262 (302)
T 3s25_A 217 PNP-----VVLTE--------------ANI--EHYNVYGSLIFYQRGGDNPALCVVKND--GTGFKELA 262 (302)
T ss_dssp CCC-----EECSC--------------SCE--EEEEEETTEEEEEECSSSCEEEEEETT--SCCCEEEE
T ss_pred CCe-----EEEeC--------------CCc--ceEEECCCEEEEEECCCCcEEEEEECC--CCccEEee
Confidence 432 11111 123 347888998886533 455555554 55444443
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.18 E-value=12 Score=32.43 Aligned_cols=25 Identities=8% Similarity=0.165 Sum_probs=18.2
Q ss_pred CCCEEEEEeCC-----CcEEEEecCCCcee
Q 010256 409 DGGRVATGSYS-----NLFRVFGCSEGSAE 433 (514)
Q Consensus 409 ~~~~l~s~~~d-----g~i~iwd~~~~~~~ 433 (514)
++++++.|+.+ ..+.+||+.+....
T Consensus 206 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 235 (301)
T 2vpj_A 206 NDHIYVVGGFDGTAHLSSVEAYNIRTDSWT 235 (301)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred CCEEEEEeCCCCCcccceEEEEeCCCCcEE
Confidence 67777777754 46899999877544
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.71 E-value=15 Score=31.93 Aligned_cols=52 Identities=6% Similarity=-0.004 Sum_probs=27.7
Q ss_pred CCCEEEEEeCC-----CcEEEEecCCCceeee-eecCCCcceeEEEECCCCCceeecCCC
Q 010256 409 DGGRVATGSYS-----NLFRVFGCSEGSAEST-TLEASKNPMRRQVQTPSRPSRPLGSLS 462 (514)
Q Consensus 409 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~s~d 462 (514)
++++++.|+.+ ..+.+||+.+.+.... .+.........+.+ ++++++.|+.+
T Consensus 200 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~ 257 (306)
T 3ii7_A 200 KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQ 257 (306)
T ss_dssp TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBC
T ss_pred CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcC
Confidence 66777777653 4688999987654321 11111111122222 55666666644
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=86.00 E-value=43 Score=36.41 Aligned_cols=154 Identities=10% Similarity=0.160 Sum_probs=95.3
Q ss_pred cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCC
Q 010256 252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (514)
Q Consensus 252 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 331 (514)
+..+|.|.|+..+....+ ..-..-+...+|.. +.+|.-. ...+.|||+.+.... +.+...
T Consensus 46 ~~~~vvIidl~~~~~~~r-----------rpi~AdsAIMnP~~-~iiALra-g~~lQiFnl~~k~kl----ks~~~~--- 105 (1630)
T 1xi4_A 46 EQAQVVIIDMNDPSNPIR-----------RPISADSAIMNPAS-KVIALKA-GKTLQIFNIEMKSKM----KAHTMT--- 105 (1630)
T ss_pred CCceEEEEECCCCCCccc-----------ccccchhhccCCCc-ceEEEec-CCeEEEeehHHhhhh----cccccC---
Confidence 344788888886554321 11222355678887 6666554 789999999886552 222222
Q ss_pred CccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCC
Q 010256 332 GTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG 411 (514)
Q Consensus 332 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 411 (514)
.+|.-=.|-. .+.|+--++..|.-|++.....|.+.+..|..... ..|..-..+++.+
T Consensus 106 ----------e~VvfWkWis-~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~-----------~QIinY~~d~~~k 163 (1630)
T 1xi4_A 106 ----------DDVTFWKWIS-LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAG-----------CQIINYRTDAKQK 163 (1630)
T ss_pred ----------CCceEEEecC-CCeeEEEcCCeEEEeccCCCCccHHHHhcchhccc-----------CeeEEeeeCCCCC
Confidence 2455555543 34555555668999999754677777777765421 1133667788888
Q ss_pred EEEEEe-------CCCcEEEEecCCCceeeeeecCCCcceeEEEE
Q 010256 412 RVATGS-------YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQ 449 (514)
Q Consensus 412 ~l~s~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 449 (514)
+++..+ -.|.+.+|..+.+ ..+.++||......+..
T Consensus 164 W~~l~gi~~~~~~v~G~mQLyS~er~--~sQ~iegha~~F~~~~~ 206 (1630)
T 1xi4_A 164 WLLLTGISAQQNRVVGAMQLYSVDRK--VSQPIEGHAASFAQFKM 206 (1630)
T ss_pred eEEEEeeccCCCcccceeeeeecccc--cchhhhHhHhhhheecc
Confidence 877433 3478899998743 44678888665544443
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.99 E-value=9.2 Score=34.06 Aligned_cols=111 Identities=12% Similarity=0.116 Sum_probs=59.1
Q ss_pred cEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE--eCCeEEEEEccCCC
Q 010256 296 NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR--DYMTLKLWDINMDS 373 (514)
Q Consensus 296 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~--~~~~i~iwd~~~~~ 373 (514)
.+++.++.||.|.-+|..+|+..++.... ... + ....... .. ..++..++.. .+|.|..++..+ +
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~--~~~-p--~~~~~~~--~~-----~~~~~~~vv~p~~dG~l~a~~~~~-G 77 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPE--NFQ-P--LIEIQEP--SR-----LETYETLIIEPFGDGNIYYFNAHQ-G 77 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGG--GSC-C--SEECCCS--CT-----TTSSEEEEECCSTTTEEEEEETTT-E
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCC--ccC-C--cEEecCC--cc-----ccCCcEEEEEECCCCEEEEEECCC-C
Confidence 47888999999999999999876542111 000 0 0000000 00 0123333332 458888888765 4
Q ss_pred CceeeeeeccccccccccccccCCccceeeEEEc-----------CCCCEEEEEeCCCcEEEEecCCCcee
Q 010256 374 GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS-----------GDGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----------~~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
.....+..... +. .. .+... ..+..+++|+.+|++.-.|+.+|+.+
T Consensus 78 ~~~~~~~~~~l-v~-~S------------P~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~ 134 (339)
T 2be1_A 78 LQKLPLSIRQL-VS-TS------------PLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEII 134 (339)
T ss_dssp EEEEEEEHHHH-HT-TC------------SEEEECC----------CCEEEEECEEEEEEEEEETTTCCEE
T ss_pred cEEeeeccccc-ee-cc------------ccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEE
Confidence 33222221110 00 00 01111 14557889999999999999998544
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.97 E-value=23 Score=30.73 Aligned_cols=24 Identities=8% Similarity=0.058 Sum_probs=17.2
Q ss_pred CCCEEEEEeCCC-----cEEEEecCCCce
Q 010256 409 DGGRVATGSYSN-----LFRVFGCSEGSA 432 (514)
Q Consensus 409 ~~~~l~s~~~dg-----~i~iwd~~~~~~ 432 (514)
++++++.|+.++ .+.+||+.+.+.
T Consensus 251 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 251 NGLLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence 677777777553 488899887644
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=82.01 E-value=3.8 Score=39.04 Aligned_cols=79 Identities=15% Similarity=0.114 Sum_probs=52.8
Q ss_pred CeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCC----cccccCCceEEEEEecCCCcEEEEEecCCeEE
Q 010256 235 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPA----NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIR 308 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~ 308 (514)
....+.++|||++++.+ -+.++.++|++.-...+.-.-.++. .-....-.....+|.++| +...+---|..|.
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G-~aYTtlfidSqvv 402 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRG-NAYTTLFIDSQVV 402 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSS-EEEEEETTTTEEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCC-ceEeeeeecceEE
Confidence 34578889999998886 6999999999842211100000000 001124556889999998 7777777899999
Q ss_pred EEEcCC
Q 010256 309 LIDMRQ 314 (514)
Q Consensus 309 ~wd~~~ 314 (514)
-|++..
T Consensus 403 kWni~~ 408 (638)
T 3sbq_A 403 KWNMEE 408 (638)
T ss_dssp EEEHHH
T ss_pred EEeccH
Confidence 999975
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.84 E-value=27 Score=30.26 Aligned_cols=25 Identities=0% Similarity=-0.089 Sum_probs=18.3
Q ss_pred CCCEEEEEeCC-----CcEEEEecCCCcee
Q 010256 409 DGGRVATGSYS-----NLFRVFGCSEGSAE 433 (514)
Q Consensus 409 ~~~~l~s~~~d-----g~i~iwd~~~~~~~ 433 (514)
++++++.|+.+ ..+.+||+.+.+..
T Consensus 247 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 247 GSIVYVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 67778888754 56889999876554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 514 | ||||
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 9e-09 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 0.002 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 0.002 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-07 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 9e-05 |
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.2 bits (131), Expect = 9e-09
Identities = 45/351 (12%), Positives = 103/351 (29%), Gaps = 46/351 (13%)
Query: 102 EFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKA 161
+ + KSL+ + +++ YL + +KT ++++V + + + K
Sbjct: 52 DVELHKSLDHTSVVCCVKFSNDGE---YLATGCNKTTQVYRVSDGSLVARLSDDSAANKD 108
Query: 162 AGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVV-------- 213
N S S + + G+ A + + + ++
Sbjct: 109 PENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYS 168
Query: 214 -----------------TSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLR 255
T + +L G + D + DG+ + D
Sbjct: 169 LDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRA 228
Query: 256 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 315
+ +W+ E + +D + + + + S F + S S++L +++ +
Sbjct: 229 VRVWDSE-TGFLVERLDSENESGTGHKDSVYSVVFTRDG-QSVVSGSLDRSVKLWNLQNA 286
Query: 316 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS-RDYMTLKLWDINMDSG 374
+ + + +N +ILS + WD
Sbjct: 287 NNKSDSKTPNSGT----CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK-SGN 341
Query: 375 PVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 425
P+ Q H + S+ L + ATGS R++
Sbjct: 342 PLLMLQGHRN---------SVISVAVANGSSLGPEYNVFATGSGDCKARIW 383
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.2 bits (87), Expect = 0.002
Identities = 33/285 (11%), Positives = 76/285 (26%), Gaps = 29/285 (10%)
Query: 38 ISAIEFDKSGDHLATG-----DRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRY 92
I ++ F G LATG R + + Q S +
Sbjct: 124 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 183
Query: 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVF 152
+ + E + + D+ +++W + + +
Sbjct: 184 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL 243
Query: 153 DWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVV 212
D H ++ G ++ S D S + +
Sbjct: 244 DSENES---------GTGHKDSVYSVVFTRDG---QSVVSGSLDRSVKLWNLQNANNKSD 291
Query: 213 VTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271
+ + + H + S++ + E +S D + W+ + S N +
Sbjct: 292 SKTPNSG----TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK----SGNPL 343
Query: 272 DVKPANMEDLTEV--ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQ 314
+ + + V + P + N+ A S R+ ++
Sbjct: 344 LMLQGHRNSVISVAVANGSSLGPEY-NVFATGSGDCKARIWKYKK 387
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.9 bits (86), Expect = 0.002
Identities = 36/292 (12%), Positives = 85/292 (29%), Gaps = 37/292 (12%)
Query: 232 HDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFH 291
H + + ++DGE + + ++ + + + D AN + +S+
Sbjct: 61 HTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 120
Query: 292 PTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351
+ + +S + D ++++ + S F
Sbjct: 121 DLYIRSVCFSPDG------KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS 174
Query: 352 NGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG 411
+ + T+++WD+ + GDG
Sbjct: 175 GDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGV----------------TTVAVSPGDGK 218
Query: 412 RVATGSYSNLFRVFGCSEGS------AESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVV 465
+A GS RV+ G +E+ + K+ + V T S GSL V
Sbjct: 219 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV 278
Query: 466 RRVKGADNSALDANGNAFDFSMKL---------LHLAWHPSENSIACAASNS 508
+ + + + + ++ L +A ++ I + +
Sbjct: 279 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 330
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 51.3 bits (121), Expect = 1e-07
Identities = 42/324 (12%), Positives = 93/324 (28%), Gaps = 34/324 (10%)
Query: 112 EEKINKIRWCQSANSALYLLS-TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170
+ ++ + + ++S + D TIK+W + ++ + +
Sbjct: 17 RSPVTRVIFHPVFS---VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL 73
Query: 171 HVSAIPKSYMANGGCGERNFGC---ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRI 227
S + + + + + V + +T + +
Sbjct: 74 LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG 133
Query: 228 YA----HAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLT 282
Y H + + N DG S +D + +W + + + +
Sbjct: 134 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA----TKECKAELREHRHVVE 189
Query: 283 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 342
+ + E + + S +K S + S D K+++ +
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH-DN 248
Query: 343 SISDIKFARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 401
+ + F G+ ILS D TL++WD + T HE +
Sbjct: 249 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKR-CMKTLNAHE------------HFVTS- 294
Query: 402 FECCLSGDGGRVATGSYSNLFRVF 425
V TGS +V+
Sbjct: 295 --LDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.4 bits (98), Expect = 9e-05
Identities = 38/204 (18%), Positives = 68/204 (33%), Gaps = 41/204 (20%)
Query: 224 CRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLT 282
+ H + S+S D F+S D LW++
Sbjct: 175 QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR--------QTFTGHE 226
Query: 283 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIA 342
I + F P + N A S + RL D+R T+ II
Sbjct: 227 SDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTY--------------SHDNIIC 271
Query: 343 SISDIKFARNGRHILS-RDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDK 401
I+ + F+++GR +L+ D +WD + H+ + +
Sbjct: 272 GITSVSFSKSGRLLLAGYDDFNCNVWDAL-KADRAGVLAGHD------------NRVSC- 317
Query: 402 FECCLSGDGGRVATGSYSNLFRVF 425
++ DG VATGS+ + +++
Sbjct: 318 --LGVTDDGMAVATGSWDSFLKIW 339
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 514 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.98 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.97 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.96 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.96 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.95 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.95 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.95 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.94 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.93 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.93 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.91 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.9 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.89 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.87 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.86 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.86 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.84 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.84 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.83 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.83 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.79 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.75 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.71 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.66 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.6 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.59 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.48 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.47 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.46 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.26 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.21 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.19 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.18 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.14 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.08 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.07 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.03 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.98 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.97 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.96 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.91 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.89 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.87 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.76 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.62 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.4 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.36 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.31 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.23 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.6 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.45 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.34 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 97.26 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.77 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 96.51 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 95.96 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 95.77 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 95.12 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 94.97 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 94.9 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 94.68 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 94.63 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 93.67 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 93.54 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 91.22 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 90.08 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 89.51 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 88.84 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 88.6 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 88.28 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 88.12 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 87.97 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 86.75 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 86.61 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 86.6 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 84.63 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 84.54 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.7e-39 Score=296.00 Aligned_cols=285 Identities=11% Similarity=0.170 Sum_probs=229.6
Q ss_pred cccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccc
Q 010256 30 EEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (514)
Q Consensus 30 ~~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (514)
...+|.+.|+|++|+|+|++||+|+ ||.|+|||+.+.... .........+|.
T Consensus 46 ~~~~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~------------------~~~~~~~~~~h~--------- 97 (337)
T d1gxra_ 46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK------------------SPVSQLDCLNRD--------- 97 (337)
T ss_dssp EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC------------------SCSEEEECSCTT---------
T ss_pred EECCCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCccc------------------ceeEEeeecCCC---------
Confidence 3558999999999999999999997 899999999766532 111223345676
Q ss_pred ccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
+.|.+++| ++++++|++++.||.|++||+..........
T Consensus 98 ---~~I~~v~~--s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~------------------------------------ 136 (337)
T d1gxra_ 98 ---NYIRSCKL--LPDGCTLIVGGEASTLSIWDLAAPTPRIKAE------------------------------------ 136 (337)
T ss_dssp ---SBEEEEEE--CTTSSEEEEEESSSEEEEEECCCC--EEEEE------------------------------------
T ss_pred ---CcEEEEEE--cCCCCEEEEeecccccccccccccccccccc------------------------------------
Confidence 88999999 5678899999999999999987543211100
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCcee
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSF 268 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~ 268 (514)
+..|...+.+++|+|++.+++++ .|+.|++|++++.+...
T Consensus 137 ---------------------------------------~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~ 177 (337)
T d1gxra_ 137 ---------------------------------------LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR 177 (337)
T ss_dssp ---------------------------------------EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred ---------------------------------------ccccccccccccccccccccccccccccccccccccccccc
Confidence 24667789999999999999998 99999999998655432
Q ss_pred eeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEE
Q 010256 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (514)
Q Consensus 269 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (514)
....|...+.+++|++++ ..+++++.|+.+++||+++++.. ..+ .|...|.+++
T Consensus 178 --------~~~~~~~~v~~l~~s~~~-~~~~~~~~d~~v~i~d~~~~~~~----~~~-------------~~~~~i~~l~ 231 (337)
T d1gxra_ 178 --------QFQGHTDGASCIDISNDG-TKLWTGGLDNTVRSWDLREGRQL----QQH-------------DFTSQIFSLG 231 (337)
T ss_dssp --------EECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEE----EEE-------------ECSSCEEEEE
T ss_pred --------cccccccccccccccccc-cccccccccccccccccccceee----ccc-------------ccccceEEEE
Confidence 345688899999999998 89999999999999999987652 222 2446899999
Q ss_pred EecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEec
Q 010256 349 FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (514)
Q Consensus 349 ~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 427 (514)
|+|++++|++++. +.+++||++. ... .....|... |.+++|+|++++|++++.||.|++||+
T Consensus 232 ~~~~~~~l~~~~~d~~i~i~d~~~-~~~-~~~~~~~~~---------------i~~v~~s~~g~~l~s~s~Dg~i~iwd~ 294 (337)
T d1gxra_ 232 YCPTGEWLAVGMESSNVEVLHVNK-PDK-YQLHLHESC---------------VLSLKFAYCGKWFVSTGKDNLLNAWRT 294 (337)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTS-SCE-EEECCCSSC---------------EEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred Ecccccccceeccccccccccccc-ccc-ccccccccc---------------cceEEECCCCCEEEEEeCCCeEEEEEC
Confidence 9999999999765 9999999986 443 333444433 448999999999999999999999999
Q ss_pred CCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 428 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.+++.. .. ..|..+|.+++|+|++++|++|+.|++|++
T Consensus 295 ~~~~~~-~~-~~~~~~v~~~~~s~d~~~l~t~s~D~~I~v 332 (337)
T d1gxra_ 295 PYGASI-FQ-SKESSSVLSCDISVDDKYIVTGSGDKKATV 332 (337)
T ss_dssp TTCCEE-EE-EECSSCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred CCCCEE-EE-ccCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 987554 33 357789999999999999999999999999
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=7.1e-39 Score=301.15 Aligned_cols=326 Identities=15% Similarity=0.222 Sum_probs=224.3
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|+||+|+|||++||+|+ |+.|+|||+.+++... .+..... ....+.........+|.
T Consensus 58 ~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~---------- 121 (388)
T d1erja_ 58 SLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA----RLSDDSA-ANKDPENLNTSSSPSSD---------- 121 (388)
T ss_dssp EEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE----EECC------------------CCC----------
T ss_pred eCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEe----eeccccc-ccccccccccccccCCC----------
Confidence 347999999999999999999997 8999999998776421 1100000 00001111112223344
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|++++| ++++++|++|+.||.|++|+...++.......+ ...+. .+.+++++..+
T Consensus 122 --~~V~~l~~--s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h--------~~~v~-------~~~~~~~~~~~---- 178 (388)
T d1erja_ 122 --LYIRSVCF--SPDGKFLATGAEDRLIRIWDIENRKIVMILQGH--------EQDIY-------SLDYFPSGDKL---- 178 (388)
T ss_dssp --CBEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEEEECCC--------SSCEE-------EEEECTTSSEE----
T ss_pred --CCEEEEEE--CCCCCcceecccccccccccccccccccccccc--------ccccc-------ccccccccccc----
Confidence 78999999 567889999999999999999998876665543 23344 77888998888
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEEC-CCCCEEEEe-cCCeEEEEeccCCCcee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNN-SDGETFISA-DDLRINLWNLEISNQSF 268 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~-~d~~i~iwd~~~~~~~~ 268 (514)
++++.++.+++|| ...... ... ..+.....++.+. +++++|+++ .|+.|++||.++.....
T Consensus 179 --------~~~~~~~~i~~~d-~~~~~~------~~~--~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~ 241 (388)
T d1erja_ 179 --------VSGSGDRTVRIWD-LRTGQC------SLT--LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVE 241 (388)
T ss_dssp --------EEEETTSEEEEEE-TTTTEE------EEE--EECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEE
T ss_pred --------cccccceeeeeee-cccccc------ccc--cccccccccccccCCCCCeEEEEcCCCeEEEeecccCccce
Confidence 8999999999999 322211 111 2233344455554 578999998 99999999998665543
Q ss_pred eeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEE
Q 010256 269 NIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (514)
Q Consensus 269 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (514)
.+ ........+|...|.+++|+|++ .+|++++.||.|++||++++.... ................|...|.+++
T Consensus 242 ~~-~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~ 315 (388)
T d1erja_ 242 RL-DSENESGTGHKDSVYSVVFTRDG-QSVVSGSLDRSVKLWNLQNANNKS----DSKTPNSGTCEVTYIGHKDFVLSVA 315 (388)
T ss_dssp EE-C------CCCSSCEEEEEECTTS-SEEEEEETTSEEEEEEC-------------------CEEEEEECCSSCEEEEE
T ss_pred ee-ccccccccCCCCCEEEEEECCCC-CEEEEEECCCcEEEEeccCCcccc----ccccccccceeeecccccceEEEEE
Confidence 32 22223456788999999999998 899999999999999998866421 1111111122234556788999999
Q ss_pred EecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEec
Q 010256 349 FARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (514)
Q Consensus 349 ~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 427 (514)
|+|++++|++|+. |.|++||+.+ ++++.++.+|...+..+... ..++|+|++++|++|+.||.|+||++
T Consensus 316 ~s~~~~~l~sg~~dg~i~vwd~~~-~~~~~~l~~H~~~V~~~~~~---------~~~~~spd~~~l~s~s~Dg~I~iW~~ 385 (388)
T d1erja_ 316 TTQNDEYILSGSKDRGVLFWDKKS-GNPLLMLQGHRNSVISVAVA---------NGSSLGPEYNVFATGSGDCKARIWKY 385 (388)
T ss_dssp ECGGGCEEEEEETTSEEEEEETTT-CCEEEEEECCSSCEEEEEEC---------SSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred ECCCCCEEEEEeCCCEEEEEECCC-CcEEEEEeCCCCCEEEEEEe---------cCcccCCCCCEEEEEeCCCEEEEEee
Confidence 9999999999865 9999999997 89999999987653211100 02346889999999999999999998
Q ss_pred C
Q 010256 428 S 428 (514)
Q Consensus 428 ~ 428 (514)
+
T Consensus 386 ~ 386 (388)
T d1erja_ 386 K 386 (388)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.6e-37 Score=282.80 Aligned_cols=281 Identities=17% Similarity=0.254 Sum_probs=236.1
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|++|+|+|++++||||+.||+|+|||+.+++. ..++.+|.
T Consensus 13 L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~-----------------------~~~~~~h~---------- 59 (317)
T d1vyhc1 13 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF-----------------------ERTLKGHT---------- 59 (317)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCC-----------------------CEEECCCS----------
T ss_pred EcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCE-----------------------EEEEeCCC----------
Confidence 458999999999999999999999999999999987763 36678888
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|.+++| ++++.+++++..++.+.+|+....+....
T Consensus 60 --~~V~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------- 96 (317)
T d1vyhc1 60 --DSVQDISF--DHSGKLLASCSADMTIKLWDFQGFECIRT--------------------------------------- 96 (317)
T ss_dssp --SCEEEEEE--CTTSSEEEEEETTSCCCEEETTSSCEEEC---------------------------------------
T ss_pred --CcEEEEee--ecccccccccccccccccccccccccccc---------------------------------------
Confidence 88999999 56778999999999999998766542110
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
..+|...+.++.++|+++.++++ .|+.+++||+++++...
T Consensus 97 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~- 137 (317)
T d1vyhc1 97 --------------------------------------MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK- 137 (317)
T ss_dssp --------------------------------------CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE-
T ss_pred --------------------------------------cccccccceeeeccCCCceEEeeccCcceeEeecccceeee-
Confidence 24566788999999999999999 99999999998765443
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
.+..|...+.+++|+|++ .+|++++.|+.|++|+++++... .. +.+|...+.+++|
T Consensus 138 -------~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~v~~~~~~~~~~~----~~------------~~~~~~~i~~~~~ 193 (317)
T d1vyhc1 138 -------TFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECK----AE------------LREHRHVVECISW 193 (317)
T ss_dssp -------EEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEE----EE------------ECCCSSCEEEEEE
T ss_pred -------EEccCCCcceeeecccCC-CEEEEEeCCCeEEEEeeccceee----EE------------EecCCCCceEEEE
Confidence 456788999999999998 89999999999999999887652 22 2334455666666
Q ss_pred ecC--------------------CCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcC
Q 010256 350 ARN--------------------GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSG 408 (514)
Q Consensus 350 s~~--------------------g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 408 (514)
+|+ +.++++++ |+.|++||+.+ ++++.++.+|... |.+++|+|
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~~~~~~~---------------v~~~~~~~ 257 (317)
T d1vyhc1 194 APESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST-GMCLMTLVGHDNW---------------VRGVLFHS 257 (317)
T ss_dssp CCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT-TEEEEEEECCSSC---------------EEEEEECS
T ss_pred eeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCC-CcEEEEEeCCCCC---------------EEEEEECC
Confidence 653 45677765 59999999997 8888888888754 44899999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 409 DGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 409 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
++++|++|+.||.|++||+.+++ ...++.+|..+|++++|+|++++|++|+.||+|++
T Consensus 258 ~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~i 315 (317)
T d1vyhc1 258 GGKFILSCADDKTLRVWDYKNKR-CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 315 (317)
T ss_dssp SSSCEEEEETTTEEEEECCTTSC-CCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred CCCEEEEEECCCeEEEEECCCCc-EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 99999999999999999999874 45889999999999999999999999999999998
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=4.7e-37 Score=286.40 Aligned_cols=342 Identities=13% Similarity=0.163 Sum_probs=232.3
Q ss_pred ccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccc
Q 010256 35 VDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (514)
Q Consensus 35 ~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (514)
.++|+|++|+|||++||+|+.||.|+||+..+++.. ....+++|. ..
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~---------------------~~~~l~gH~------------~~ 53 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWV---------------------QVHELKEHN------------GQ 53 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEE---------------------EEEEEECCS------------SC
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEE---------------------EEEEecCCC------------CC
Confidence 478999999999999999999999999999766532 456788998 88
Q ss_pred eeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCC
Q 010256 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (514)
Q Consensus 115 v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (514)
|++++|+ +++++|++++.|++|++||+.++.......
T Consensus 54 V~~l~fs--p~~~~l~s~s~D~~i~vWd~~~~~~~~~~~----------------------------------------- 90 (371)
T d1k8kc_ 54 VTGVDWA--PDSNRIVTCGTDRNAYVWTLKGRTWKPTLV----------------------------------------- 90 (371)
T ss_dssp EEEEEEE--TTTTEEEEEETTSCEEEEEEETTEEEEEEE-----------------------------------------
T ss_pred EEEEEEC--CCCCEEEEEECCCeEEEEeecccccccccc-----------------------------------------
Confidence 9999995 567799999999999999998765433211
Q ss_pred CCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeecc
Q 010256 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDV 273 (514)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~ 273 (514)
+.+|...|.+++|+|+++.|+++ .|++|++|+++.........
T Consensus 91 ----------------------------------~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~-- 134 (371)
T d1k8kc_ 91 ----------------------------------ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK-- 134 (371)
T ss_dssp ----------------------------------CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE--
T ss_pred ----------------------------------cccccccccccccccccccceeecccCcceeeeeeccccccccc--
Confidence 14567889999999999999999 99999999988655432221
Q ss_pred CCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCC--CccceeeccccceeEEEEec
Q 010256 274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP--GTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 274 ~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~s~ 351 (514)
.....|...|.+++|+|++ .+|++|+.|+.|++||+..................+ .......+|...|.+++|+|
T Consensus 135 --~~~~~~~~~v~~v~~~p~~-~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 211 (371)
T d1k8kc_ 135 --HIKKPIRSTVLSLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA 211 (371)
T ss_dssp --EECTTCCSCEEEEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS
T ss_pred --ccccccccccccccccccc-cceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeec
Confidence 1345688899999999999 899999999999999998755322111111011111 11223456788999999999
Q ss_pred CCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 352 NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 352 ~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
+|++|++++ |+.|++||+.. ++.+..+..|... |.+++|+||+++|++|. |+.+++|.....
T Consensus 212 ~g~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~---------------v~s~~fs~d~~~la~g~-d~~~~~~~~~~~ 274 (371)
T d1k8kc_ 212 NGSRVAWVSHDSTVCLADADK-KMAVATLASETLP---------------LLAVTFITESSLVAAGH-DCFPVLFTYDSA 274 (371)
T ss_dssp SSSEEEEEETTTEEEEEEGGG-TTEEEEEECSSCC---------------EEEEEEEETTEEEEEET-TSSCEEEEEETT
T ss_pred ccccccccccCCcceEEeeec-ccceeeeeccccc---------------ceeeeecCCCCEEEEEc-CCceEEEEeeCC
Confidence 999999976 49999999997 8888888877654 44899999998887655 677777665543
Q ss_pred ceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCC----CEEEEEe-
Q 010256 431 SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSE----NSIACAA- 505 (514)
Q Consensus 431 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~----~~l~~~~- 505 (514)
... ..+..+...............-.....|..... .+.... .......|...|+++++.|.+ ..|++++
T Consensus 275 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~ 349 (371)
T d1k8kc_ 275 AGK-LSFGGRLDVPKQSSQRGLTARERFQNLDKKASS-EGSAAA---GAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGM 349 (371)
T ss_dssp TTE-EEECCCCCCC--------CHHHHHHHCCCCC-------------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEET
T ss_pred Cce-EEEeeeecCccccccccccceeeEecccceeEE-eccccc---cceecccccCCEEEEEEeCCCCcceEEEEEEcC
Confidence 222 122221111100000000000000001111111 000000 001112388999999998865 3577777
Q ss_pred cCcEEEEe
Q 010256 506 SNSLYMYY 513 (514)
Q Consensus 506 ~~~~~i~~ 513 (514)
++.++||+
T Consensus 350 Dg~v~iW~ 357 (371)
T d1k8kc_ 350 DGGMSIWD 357 (371)
T ss_dssp TSEEEEEE
T ss_pred CCeEEEEe
Confidence 67799996
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=8.2e-37 Score=276.69 Aligned_cols=288 Identities=11% Similarity=0.135 Sum_probs=224.1
Q ss_pred ccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccc
Q 010256 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (514)
.+.+.+.+++++|+|+.||.+. ++.|.+|++.+... ...+.+|.
T Consensus 15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~-----------------------~~~~~~H~------------ 58 (311)
T d1nr0a1 15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTD-----------------------TEIYTEHS------------ 58 (311)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSC-----------------------CEEECCCS------------
T ss_pred CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCce-----------------------eEEEcCCC------------
Confidence 3445677899999999999985 66799999986653 35578888
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
+.|++++| +++|++|++|+.||+|++||+.+++....
T Consensus 59 ~~v~~~~~--sp~g~~latg~~dg~i~iwd~~~~~~~~~----------------------------------------- 95 (311)
T d1nr0a1 59 HQTTVAKT--SPSGYYCASGDVHGNVRIWDTTQTTHILK----------------------------------------- 95 (311)
T ss_dssp SCEEEEEE--CTTSSEEEEEETTSEEEEEESSSTTCCEE-----------------------------------------
T ss_pred CCEEEEEE--eCCCCeEeccccCceEeeeeeeccccccc-----------------------------------------
Confidence 88999999 56788999999999999999986531110
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-c--CCeEEEEeccCCCceee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D--DLRINLWNLEISNQSFN 269 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~--d~~i~iwd~~~~~~~~~ 269 (514)
..+..|..+|.+++|+|++++|+++ . +..+++|++++.+...
T Consensus 96 ----------------------------------~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~- 140 (311)
T d1nr0a1 96 ----------------------------------TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNG- 140 (311)
T ss_dssp ----------------------------------EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCB-
T ss_pred ----------------------------------cccccccCccccccccccccccccccccccccccccccccccccc-
Confidence 0025677899999999999999887 4 5679999998665432
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
.+.+|...|++++|+|++..+|++|+.|+.|++||+++++.. . .+.+|...|+++.|
T Consensus 141 -------~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~----~------------~~~~~~~~i~~v~~ 197 (311)
T d1nr0a1 141 -------NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK----S------------TFGEHTKFVHSVRY 197 (311)
T ss_dssp -------CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEE----E------------EECCCSSCEEEEEE
T ss_pred -------cccccccccccccccccceeeecccccccccccccccccccc----c------------cccccccccccccc
Confidence 567889999999999998557899999999999999987652 2 24456688999999
Q ss_pred ecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecC
Q 010256 350 ARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 350 s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 428 (514)
+|+++++++++ |+.|++||+.. +..+..+....... . ..-..|++++|+|++++|++|+.||.|+|||++
T Consensus 198 ~p~~~~l~~~~~d~~v~~~d~~~-~~~~~~~~~~~~~~-----~---~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~ 268 (311)
T d1nr0a1 198 NPDGSLFASTGGDGTIVLYNGVD-GTKTGVFEDDSLKN-----V---AHSGSVFGLTWSPDGTKIASASADKTIKIWNVA 268 (311)
T ss_dssp CTTSSEEEEEETTSCEEEEETTT-CCEEEECBCTTSSS-----C---SSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred Ccccccccccccccccccccccc-cccccccccccccc-----c---cccccccccccCCCCCEEEEEeCCCeEEEEECC
Confidence 99999999976 59999999987 66665554322110 0 111135699999999999999999999999999
Q ss_pred CCceeeeeecCCCc-ceeEEEECCCCCceeecCCCCeEEE
Q 010256 429 EGSAESTTLEASKN-PMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 429 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+++ ...++..|.. ....+.+.+++.+|++++.||.|++
T Consensus 269 t~~-~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~ 307 (311)
T d1nr0a1 269 TLK-VEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 307 (311)
T ss_dssp TTE-EEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEE
T ss_pred CCc-EEEEEECCCCccceEEEEEecCCEEEEEECCCEEEE
Confidence 884 4466766643 2334445556678999999999998
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-36 Score=279.55 Aligned_cols=280 Identities=14% Similarity=0.169 Sum_probs=222.8
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
..|.+++| +++|++|++|+ ||.|+|||+.++.....
T Consensus 52 ~~V~~v~f--s~~g~~latg~-dg~V~iWd~~~~~~~~~----------------------------------------- 87 (337)
T d1gxra_ 52 EVVCAVTI--SNPTRHVYTGG-KGCVKVWDISHPGNKSP----------------------------------------- 87 (337)
T ss_dssp SCCCEEEE--CSSSSEEEEEC-BSEEEEEETTSTTCCSC-----------------------------------------
T ss_pred CcEEEEEE--CCCCCEEEEEE-CCEEEEEEccCCcccce-----------------------------------------
Confidence 88999999 67888999987 89999999976531100
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
+. .....+|.+.|.+++|+|++++|+++ .|++|++||+.........
T Consensus 88 --------------~~-----------------~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~- 135 (337)
T d1gxra_ 88 --------------VS-----------------QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA- 135 (337)
T ss_dssp --------------SE-----------------EEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEE-
T ss_pred --------------eE-----------------EeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccc-
Confidence 00 00025788999999999999999999 9999999998754433221
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
.+..|...+..+.|+|++ .++++++.|+.|++||+++++.. . ...+|...|.+++|++
T Consensus 136 -----~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~~~~~~~~~----~------------~~~~~~~~v~~l~~s~ 193 (337)
T d1gxra_ 136 -----ELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLV----R------------QFQGHTDGASCIDISN 193 (337)
T ss_dssp -----EEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEE----E------------EECCCSSCEEEEEECT
T ss_pred -----cccccccccccccccccc-ccccccccccccccccccccccc----c------------cccccccccccccccc
Confidence 456788899999999998 89999999999999999987652 1 1344567899999999
Q ss_pred CCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 352 NGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 352 ~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
++..+++++. +.+++||+++ ++.+..+. +... |.+++|+|++++|++++.|+.+++||+.++
T Consensus 194 ~~~~~~~~~~d~~v~i~d~~~-~~~~~~~~-~~~~---------------i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~ 256 (337)
T d1gxra_ 194 DGTKLWTGGLDNTVRSWDLRE-GRQLQQHD-FTSQ---------------IFSLGYCPTGEWLAVGMESSNVEVLHVNKP 256 (337)
T ss_dssp TSSEEEEEETTSEEEEEETTT-TEEEEEEE-CSSC---------------EEEEEECTTSSEEEEEETTSCEEEEETTSS
T ss_pred ccccccccccccccccccccc-ceeecccc-cccc---------------eEEEEEcccccccceecccccccccccccc
Confidence 9999999764 9999999987 66665543 2221 448999999999999999999999999876
Q ss_pred ceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEec-CcE
Q 010256 431 SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAAS-NSL 509 (514)
Q Consensus 431 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~-~~~ 509 (514)
.. .....|...|..++|+|++++|++++.|+.|++++..... . .....|...|++++|+||+++|++++. +.+
T Consensus 257 ~~--~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~---~-~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I 330 (337)
T d1gxra_ 257 DK--YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA---S-IFQSKESSSVLSCDISVDDKYIVTGSGDKKA 330 (337)
T ss_dssp CE--EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC---E-EEEEECSSCEEEEEECTTSCEEEEEETTSCE
T ss_pred cc--ccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCC---E-EEEccCCCCEEEEEEeCCCCEEEEEeCCCeE
Confidence 43 4667899999999999999999999999999994432211 1 123457899999999999999998874 668
Q ss_pred EEEe
Q 010256 510 YMYY 513 (514)
Q Consensus 510 ~i~~ 513 (514)
+||.
T Consensus 331 ~vWd 334 (337)
T d1gxra_ 331 TVYE 334 (337)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8996
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=8.4e-36 Score=274.47 Aligned_cols=286 Identities=14% Similarity=0.207 Sum_probs=224.9
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|++|+|+|++++||+|+.||+|+|||+.+++ ....+..|.
T Consensus 51 L~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~-----------------------~~~~~~~~~---------- 97 (340)
T d1tbga_ 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN-----------------------KVHAIPLRS---------- 97 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTE-----------------------EEEEEECSC----------
T ss_pred ECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccce-----------------------eEEEEeccc----------
Confidence 45899999999999999999999999999999998766 446677887
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|.+++| ++++.++++++.|+.+++|+..........
T Consensus 98 --~~v~~v~~--~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~-------------------------------------- 135 (340)
T d1tbga_ 98 --SWVMTCAY--APSGNYVACGGLDNICSIYNLKTREGNVRV-------------------------------------- 135 (340)
T ss_dssp --SCEEEEEE--CTTSSEEEEEETTCCEEEEESSSSCSCCCE--------------------------------------
T ss_pred --ccEEeeEe--eccceeeeeecccceeeccccccccccccc--------------------------------------
Confidence 88999999 567789999999999999997654210000
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
... +.+|...........+. .+... .+.....+.........
T Consensus 136 ----------------------------------~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~- 178 (340)
T d1tbga_ 136 ----------------------------------SRE-LAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTT- 178 (340)
T ss_dssp ----------------------------------EEE-ECCCSSCEEEEEEEETT-EEEEEETTTEEEEEETTTTEEEE-
T ss_pred ----------------------------------cee-ccccccccccccccccc-ccccccccccccccccccccccc-
Confidence 000 13444545444444444 44445 88999999887544332
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
....+...+....+.+.+ .++++|+.|+.|++||+++++.. .. +.+|...|++++|
T Consensus 179 -------~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~v~i~d~~~~~~~----~~------------~~~h~~~i~~v~~ 234 (340)
T d1tbga_ 179 -------TFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCR----QT------------FTGHESDINAICF 234 (340)
T ss_dssp -------EEECCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTTTEEE----EE------------ECCCSSCEEEEEE
T ss_pred -------cccccceeEeeecccccc-ceeEEeecCceEEEEECCCCcEE----EE------------EeCCCCCeEEEEE
Confidence 233456778899999988 89999999999999999987752 22 4456689999999
Q ss_pred ecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecC
Q 010256 350 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 350 s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 428 (514)
+|++++|++|+. +.|++||+.. ...+..+...... ..+.+++|+|++++|++|+.||.|++||+.
T Consensus 235 ~p~~~~l~s~s~d~~i~~~~~~~-~~~~~~~~~~~~~-------------~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~ 300 (340)
T d1tbga_ 235 FPNGNAFATGSDDATCRLFDLRA-DQELMTYSHDNII-------------CGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300 (340)
T ss_dssp CTTSSEEEEEETTSCEEEEETTT-TEEEEEECCTTCC-------------SCEEEEEECSSSCEEEEEETTSCEEEEETT
T ss_pred CCCCCEEEEEeCCCeEEEEeecc-ccccccccccccc-------------CceEEEEECCCCCEEEEEECCCEEEEEECC
Confidence 999999999865 9999999986 5555544332221 124589999999999999999999999999
Q ss_pred CCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 429 EGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 429 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+++ ...++.+|..+|.+++|+|++++|++||.||.|++
T Consensus 301 ~~~-~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~i 338 (340)
T d1tbga_ 301 KAD-RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338 (340)
T ss_dssp TCC-EEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred CCc-EEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEE
Confidence 874 45889999999999999999999999999999998
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.2e-35 Score=268.41 Aligned_cols=305 Identities=15% Similarity=0.192 Sum_probs=232.6
Q ss_pred ccceeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcce
Q 010256 88 PEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPI 167 (514)
Q Consensus 88 ~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v 167 (514)
|.......++||. +.|++|+|+ +++++|++|+.||+|++||+.+++....
T Consensus 5 p~~~~~~~L~GH~------------~~I~~l~~s--p~~~~l~s~s~Dg~i~iWd~~~~~~~~~---------------- 54 (317)
T d1vyhc1 5 PRPPEKYALSGHR------------SPVTRVIFH--PVFSVMVSASEDATIKVWDYETGDFERT---------------- 54 (317)
T ss_dssp CCSSCSCEEECCS------------SCEEEEEEC--SSSSEEEEEESSSCEEEEETTTCCCCEE----------------
T ss_pred CCCCccEEEcCCC------------CCeEEEEEc--CCCCEEEEEeCCCeEEEEECCCCCEEEE----------------
Confidence 3333445789998 899999995 5677999999999999999987642111
Q ss_pred ecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCE
Q 010256 168 FGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET 247 (514)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 247 (514)
+.+|...|.+++|+|++.+
T Consensus 55 -------------------------------------------------------------~~~h~~~V~~~~~~~~~~~ 73 (317)
T d1vyhc1 55 -------------------------------------------------------------LKGHTDSVQDISFDHSGKL 73 (317)
T ss_dssp -------------------------------------------------------------ECCCSSCEEEEEECTTSSE
T ss_pred -------------------------------------------------------------EeCCCCcEEEEeeeccccc
Confidence 2567889999999999999
Q ss_pred EEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcccccccccee
Q 010256 248 FISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFE 326 (514)
Q Consensus 248 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 326 (514)
++++ .++.+.+|+........ .+..|...+.++.|+|++ +.+++++.|+.+++||+++++.. ..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~----~~-- 138 (317)
T d1vyhc1 74 LASCSADMTIKLWDFQGFECIR--------TMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCV----KT-- 138 (317)
T ss_dssp EEEEETTSCCCEEETTSSCEEE--------CCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEE----EE--
T ss_pred cccccccccccccccccccccc--------ccccccccceeeeccCCC-ceEEeeccCcceeEeecccceee----eE--
Confidence 9999 89999999988555432 456788999999999999 89999999999999999987652 22
Q ss_pred ccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccC-----Cccc
Q 010256 327 EQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYEND-----SIFD 400 (514)
Q Consensus 327 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 400 (514)
+.+|...+.+++|+|++.+|++++. +.|++|++.. .+.+..+..+...+..+....... ....
T Consensus 139 ----------~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 207 (317)
T d1vyhc1 139 ----------FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT-KECKAELREHRHVVECISWAPESSYSSISEATG 207 (317)
T ss_dssp ----------EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCS
T ss_pred ----------EccCCCcceeeecccCCCEEEEEeCCCeEEEEeecc-ceeeEEEecCCCCceEEEEeeccccceeecccc
Confidence 3455678999999999999999765 9999999997 777777776654432111000000 0001
Q ss_pred eeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCC
Q 010256 401 KFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANG 480 (514)
Q Consensus 401 v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~ 480 (514)
.....+..++.++++++.|+.|++||+.++. ...++.+|..+|.+++++|++++|++++.||.|++++-. ..+...
T Consensus 208 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~---~~~~~~ 283 (317)
T d1vyhc1 208 SETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK---NKRCMK 283 (317)
T ss_dssp CC-------CCEEEEEETTSEEEEEETTTTE-EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCT---TSCCCE
T ss_pred ceeeeeccCCceeEeccCCCEEEEEECCCCc-EEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECC---CCcEEE
Confidence 1123344567789999999999999999874 457889999999999999999999999999999993322 112222
Q ss_pred cccccccceEEEEEcCCCCEEEEEec-CcEEEEe
Q 010256 481 NAFDFSMKLLHLAWHPSENSIACAAS-NSLYMYY 513 (514)
Q Consensus 481 ~~~~~~~~v~~~~~spd~~~l~~~~~-~~~~i~~ 513 (514)
....|...|++++|+|++++|++++. +.++||.
T Consensus 284 ~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 284 TLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 33468999999999999999999885 4688884
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.1e-35 Score=268.62 Aligned_cols=280 Identities=14% Similarity=0.168 Sum_probs=211.6
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeee-ccCCCcccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEF-QSHEPEFDYLKSL 109 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~ 109 (514)
..+|.+.|++++|+|||++||+|+.||.|++||+.+++.. ..+ .+|.
T Consensus 8 ~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~-----------------------~~~~~~h~--------- 55 (299)
T d1nr0a2 8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISN-----------------------RVFPDVHA--------- 55 (299)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE-----------------------ECSSCSCS---------
T ss_pred cCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE-----------------------EEEcCCCC---------
Confidence 4589999999999999999999999999999999876632 233 4566
Q ss_pred ccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
..|++++|+ +++. +++++.|+.+++|+........
T Consensus 56 ---~~v~~v~~~--~~g~-~~~~~~d~~v~~~~~~~~~~~~--------------------------------------- 90 (299)
T d1nr0a2 56 ---TMITGIKTT--SKGD-LFTVSWDDHLKVVPAGGSGVDS--------------------------------------- 90 (299)
T ss_dssp ---SCEEEEEEC--TTSC-EEEEETTTEEEEECSSSSSSCT---------------------------------------
T ss_pred ---CcEEEEEee--ccce-eecccceeeEEEeccCCccccc---------------------------------------
Confidence 789999994 5554 6677889999999876432000
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceee
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFN 269 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~ 269 (514)
.......+...+.+++|+|+++.++++.++.+++|+.... ..
T Consensus 91 -----------------------------------~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~---~~ 132 (299)
T d1nr0a2 91 -----------------------------------SKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL---TE 132 (299)
T ss_dssp -----------------------------------TSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEE---EE
T ss_pred -----------------------------------cccccccccccccccccccccccccccccccccccccccc---cc
Confidence 0000134557788999999999888887789999996521 11
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
. .....+.+++|+|++ ++|++|+.|+.|++||+++++... .....|...|.+++|
T Consensus 133 ~---------~~~~~~~~~~~s~~~-~~l~~g~~dg~i~~~d~~~~~~~~---------------~~~~~~~~~i~~~~~ 187 (299)
T d1nr0a2 133 V---------PISYNSSCVALSNDK-QFVAVGGQDSKVHVYKLSGASVSE---------------VKTIVHPAEITSVAF 187 (299)
T ss_dssp E---------ECSSCEEEEEECTTS-CEEEEEETTSEEEEEEEETTEEEE---------------EEEEECSSCEEEEEE
T ss_pred c---------ccccccccccccccc-cccccccccccccccccccccccc---------------ccccccccccccccc
Confidence 1 134567899999998 899999999999999998765421 012345678999999
Q ss_pred ecCCCEEEEEeC-CeEEEEEccCCCCcee---eeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEE
Q 010256 350 ARNGRHILSRDY-MTLKLWDINMDSGPVA---TFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 425 (514)
Q Consensus 350 s~~g~~l~~~~~-~~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 425 (514)
+|++++|++++. +.|++||+.+ +.... .+..|... |.+++|+|++++|++|+.||.|++|
T Consensus 188 ~~~~~~l~~~~~d~~i~~~~~~~-~~~~~~~~~~~~h~~~---------------v~~l~~s~~~~~l~sgs~dg~i~iw 251 (299)
T d1nr0a2 188 SNNGAFLVATDQSRKVIPYSVAN-NFELAHTNSWTFHTAK---------------VACVSWSPDNVRLATGSLDNSVIVW 251 (299)
T ss_dssp CTTSSEEEEEETTSCEEEEEGGG-TTEESCCCCCCCCSSC---------------EEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ccccccccccccccccccccccc-cccccccccccccccc---------------cccccccccccceEEEcCCCEEEEE
Confidence 999999999865 9999999986 44332 33334332 4589999999999999999999999
Q ss_pred ecCCCceee-eeecCC-CcceeEEEECCCCCceeecCCCCeEEE
Q 010256 426 GCSEGSAES-TTLEAS-KNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 426 d~~~~~~~~-~~~~~~-~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
|+.++.... .....| ...+..+ +.+++++|++++.|++|++
T Consensus 252 d~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~s~D~~i~i 294 (299)
T d1nr0a2 252 NMNKPSDHPIIIKGAHAMSSVNSV-IWLNETTIVSAGQDSNIKF 294 (299)
T ss_dssp ETTCTTSCCEEETTSSTTSCEEEE-EEEETTEEEEEETTSCEEE
T ss_pred ECCCCCcceEEEecCCCCCcEEEE-EECCCCEEEEEeCCCEEEE
Confidence 998765443 233344 4456555 4566789999999999999
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.1e-35 Score=279.30 Aligned_cols=302 Identities=14% Similarity=0.209 Sum_probs=215.0
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCc----------cccCCcceecccccCCceeeccC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPE----------KAAGNGPIFGSHVSAIPKSYMAN 182 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~----------~~~~~~~v~~~~~~~~~~~~~~~ 182 (514)
+.|++++| +++|++|++|+ |+.|++||+.+++............ .......|. +++|+|+
T Consensus 63 ~~V~~l~f--s~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~-------~l~~s~~ 132 (388)
T d1erja_ 63 SVVCCVKF--SNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIR-------SVCFSPD 132 (388)
T ss_dssp SCCCEEEE--CTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEE-------EEEECTT
T ss_pred CcEEEEEE--CCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEE-------EEEECCC
Confidence 89999999 66888999886 8999999999987665544332110 011122233 7899999
Q ss_pred CCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEec
Q 010256 183 GGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNL 261 (514)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~ 261 (514)
|+.+ ++++.|+.|++|+ .... +.... ..+|...|.++++++++..++++ .++.+++||.
T Consensus 133 ~~~l------------~s~~~dg~v~i~~-~~~~------~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~ 192 (388)
T d1erja_ 133 GKFL------------ATGAEDRLIRIWD-IENR------KIVMI-LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDL 192 (388)
T ss_dssp SSEE------------EEEETTSCEEEEE-TTTT------EEEEE-ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CCcc------------eeccccccccccc-cccc------ccccc-cccccccccccccccccccccccccceeeeeeec
Confidence 9998 9999999999999 3222 22222 37899999999999999999999 9999999999
Q ss_pred cCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccc
Q 010256 262 EISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEII 341 (514)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (514)
++...... ..+.....++.+.+..+++|++|+.|+.|++||++++.... .+... .....+|.
T Consensus 193 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~----~~~~~-----~~~~~~h~ 254 (388)
T d1erja_ 193 RTGQCSLT---------LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVE----RLDSE-----NESGTGHK 254 (388)
T ss_dssp TTTEEEEE---------EECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEE----EEC-----------CCCS
T ss_pred cccccccc---------cccccccccccccCCCCCeEEEEcCCCeEEEeecccCccce----eeccc-----cccccCCC
Confidence 86544322 12344556666666444899999999999999999876532 22211 12245677
Q ss_pred cceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCC
Q 010256 342 ASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSN 420 (514)
Q Consensus 342 ~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 420 (514)
..|.+++|+|++++|++++. +.|++||+.. .....................+.. .|++++|+|++++|++|+.||
T Consensus 255 ~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~sg~~dg 330 (388)
T d1erja_ 255 DSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN-ANNKSDSKTPNSGTCEVTYIGHKD---FVLSVATTQNDEYILSGSKDR 330 (388)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEC----------------CEEEEEECCSS---CEEEEEECGGGCEEEEEETTS
T ss_pred CCEEEEEECCCCCEEEEEECCCcEEEEeccC-Cccccccccccccceeeecccccc---eEEEEEECCCCCEEEEEeCCC
Confidence 89999999999999999764 9999999986 333222211111100000011111 255899999999999999999
Q ss_pred cEEEEecCCCceeeeeecCCCcceeEEEE------CCCCCceeecCCCCeEEE
Q 010256 421 LFRVFGCSEGSAESTTLEASKNPMRRQVQ------TPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 421 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~l~s~s~d~~v~i 467 (514)
.|++||+.+++. ..++++|...|.++++ +|++++|++|+.||+|++
T Consensus 331 ~i~vwd~~~~~~-~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~i 382 (388)
T d1erja_ 331 GVLFWDKKSGNP-LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382 (388)
T ss_dssp EEEEEETTTCCE-EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEE
T ss_pred EEEEEECCCCcE-EEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEE
Confidence 999999998854 5789999999999875 678999999999999999
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.4e-35 Score=268.55 Aligned_cols=253 Identities=15% Similarity=0.203 Sum_probs=201.8
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|++++|+|+|++||+|+.||.|+|||+.+++.. ....+.+|.
T Consensus 54 ~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~---------------------~~~~~~~~~---------- 102 (311)
T d1nr0a1 54 YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI---------------------LKTTIPVFS---------- 102 (311)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC---------------------EEEEEECSS----------
T ss_pred EcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccc---------------------ccccccccc----------
Confidence 4589999999999999999999999999999999876532 445677887
Q ss_pred cccceeEEEEeeCCCCcEEEEeeC--CCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTN--DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGER 188 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~ 188 (514)
..|.+++| +++++++++++. ++.+++|++++++...
T Consensus 103 --~~v~~v~~--s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~-------------------------------------- 140 (311)
T d1nr0a1 103 --GPVKDISW--DSESKRIAAVGEGRERFGHVFLFDTGTSNG-------------------------------------- 140 (311)
T ss_dssp --SCEEEEEE--CTTSCEEEEEECCSSCSEEEEETTTCCBCB--------------------------------------
T ss_pred --Cccccccc--cccccccccccccccccccccccccccccc--------------------------------------
Confidence 88999999 567788988875 5679999987654110
Q ss_pred ccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCE-EEEe-cCCeEEEEeccCCCc
Q 010256 189 NFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET-FISA-DDLRINLWNLEISNQ 266 (514)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~-~d~~i~iwd~~~~~~ 266 (514)
. +.+|...|.+++|+|++++ |++| .|+.|++||+++.+.
T Consensus 141 --------------------------------------~-l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~ 181 (311)
T d1nr0a1 141 --------------------------------------N-LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF 181 (311)
T ss_dssp --------------------------------------C-CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE
T ss_pred --------------------------------------c-ccccccccccccccccceeeeccccccccccccccccccc
Confidence 0 2578889999999999885 7778 899999999986543
Q ss_pred eeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeE
Q 010256 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (514)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 346 (514)
.. .+..|...|+++.|+|++ ++|++++.|+.|++||++++... ..++.. .....+|.+.|++
T Consensus 182 ~~--------~~~~~~~~i~~v~~~p~~-~~l~~~~~d~~v~~~d~~~~~~~----~~~~~~-----~~~~~~h~~~V~~ 243 (311)
T d1nr0a1 182 KS--------TFGEHTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGTKT----GVFEDD-----SLKNVAHSGSVFG 243 (311)
T ss_dssp EE--------EECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEE----EECBCT-----TSSSCSSSSCEEE
T ss_pred cc--------ccccccccccccccCccc-ccccccccccccccccccccccc----cccccc-----ccccccccccccc
Confidence 32 356788999999999998 89999999999999999887652 223222 1224578889999
Q ss_pred EEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEE
Q 010256 347 IKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVF 425 (514)
Q Consensus 347 ~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 425 (514)
++|+|++++|++|+ |+.|+|||+++ ++++.++..+..... ..+.+.+++++|++++.||.|++|
T Consensus 244 ~~~s~~~~~l~tgs~Dg~v~iwd~~t-~~~~~~l~~~~~~~~--------------~~~~~~~~~~~l~s~s~dG~i~~w 308 (311)
T d1nr0a1 244 LTWSPDGTKIASASADKTIKIWNVAT-LKVEKTIPVGTRIED--------------QQLGIIWTKQALVSISANGFINFV 308 (311)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSGGG--------------CEEEEEECSSCEEEEETTCCEEEE
T ss_pred cccCCCCCEEEEEeCCCeEEEEECCC-CcEEEEEECCCCccc--------------eEEEEEecCCEEEEEECCCEEEEE
Confidence 99999999999986 59999999997 888888877654321 134455567789999999999999
Q ss_pred ecC
Q 010256 426 GCS 428 (514)
Q Consensus 426 d~~ 428 (514)
|++
T Consensus 309 d~d 311 (311)
T d1nr0a1 309 NPE 311 (311)
T ss_dssp ETT
T ss_pred eCC
Confidence 974
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8e-35 Score=269.30 Aligned_cols=323 Identities=12% Similarity=0.187 Sum_probs=236.5
Q ss_pred ccccccce-EEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccc
Q 010256 31 EVQEVDII-SAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSL 109 (514)
Q Consensus 31 ~~~h~~~V-~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 109 (514)
..+|.+.| +|++| +|++||||+.||+|+|||+.+++ .+.++.+|.
T Consensus 8 L~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~-----------------------~~~~l~~H~--------- 53 (355)
T d1nexb2 8 LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK-----------------------FLLQLSGHD--------- 53 (355)
T ss_dssp EECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTE-----------------------EEEEEECCS---------
T ss_pred ECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCc-----------------------EEEEEECCC---------
Confidence 45798875 66665 58899999999999999998766 557789998
Q ss_pred ccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccc
Q 010256 110 EIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERN 189 (514)
Q Consensus 110 ~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~ 189 (514)
+.|++++|+| + .+|++++.|+.|++|++...+............ ... ...+.++++.+
T Consensus 54 ---~~V~~l~~s~--~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~------~~~-------~~~~~~~~~~~--- 111 (355)
T d1nexb2 54 ---GGVWALKYAH--G-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTV------RCL-------DIVEYKNIKYI--- 111 (355)
T ss_dssp ---SCEEEEEEET--T-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCE------EEE-------EEEEETTEEEE---
T ss_pred ---CCEEEEEEcC--C-CEEEEEecccccccccccccccccccccccccc------ccc-------cccccccccee---
Confidence 8999999954 3 489999999999999999987665544432210 111 34566777777
Q ss_pred cCCCCCCcccCCCCCCcEEeceeecccccccccc----------------ccccccccCccCeEEEEECCCCCEEEEe-c
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAG----------------CRRIYAHAHDYHINSISNNSDGETFISA-D 252 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~----------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~ 252 (514)
++++.|+.|++|+ +.......... ........|...+. .+.+++++++++ .
T Consensus 112 ---------~~~~~d~~i~iw~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~ 179 (355)
T d1nexb2 112 ---------VTGSRDNTLHVWK-LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVSGHGNIVVSGSY 179 (355)
T ss_dssp ---------EEEETTSEEEEEE-CCC-----------CCCEEESCTTTCTTEEEEEECCSSCEE--EEEEETTEEEEEET
T ss_pred ---------eeecCCCcEEEEE-ccCCceeccccccceeccceeccccccceeeeeeecccccc--ccccccceeeeecc
Confidence 8999999999999 33222110000 00000122333333 345678899998 9
Q ss_pred CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCC
Q 010256 253 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPG 332 (514)
Q Consensus 253 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 332 (514)
|+.|++||+++.+... ...++...+.++.|+|++ ..+++++.|+.|++||++++... .
T Consensus 180 d~~i~~~d~~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~----~--------- 237 (355)
T d1nexb2 180 DNTLIVWDVAQMKCLY--------ILSGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGELM----Y--------- 237 (355)
T ss_dssp TSCEEEEETTTTEEEE--------EECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTCCEE----E---------
T ss_pred cceeeeeeccccccee--------eeeccccccccccccccc-eeeecccccceEEeeeccccccc----c---------
Confidence 9999999998665432 345577889999999998 89999999999999999987652 2
Q ss_pred ccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCC
Q 010256 333 TRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG 411 (514)
Q Consensus 333 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 411 (514)
.+.+|...|.+++++ +++|++++ |+.|++||++. .. ..+..|..... ...+++++++
T Consensus 238 ---~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~-~~--~~~~~~~~~~~--------------~~~~~~~~~~ 295 (355)
T d1nexb2 238 ---TLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDAND-YS--RKFSYHHTNLS--------------AITTFYVSDN 295 (355)
T ss_dssp ---EECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTT-CC--EEEEEECTTCC--------------CCCEEEECSS
T ss_pred ---ccccccccccccccc--cceeeeeecccccccccccc-cc--eecccccCCce--------------EEEEEcCCCC
Confidence 245566889999987 46888875 59999999986 43 33444443321 1346778888
Q ss_pred EEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 412 RVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 412 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+|++|+ ||.|+|||+++++.+...+.+|..+|.+++|+|+ .++++++.||.+.|
T Consensus 296 ~l~~g~-d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l 349 (355)
T d1nexb2 296 ILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFL 349 (355)
T ss_dssp EEEEEE-TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEE
T ss_pred EEEEEe-CCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEE
Confidence 877765 8999999999986665677899999999999987 57888999999877
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.5e-32 Score=251.04 Aligned_cols=293 Identities=16% Similarity=0.205 Sum_probs=229.7
Q ss_pred cceeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCccee
Q 010256 89 EFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIF 168 (514)
Q Consensus 89 ~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~ 168 (514)
..+..++++||. +.|++++| ++++.+|++|+.||+|++||+.+++....
T Consensus 44 ~~~~~~tL~GH~------------~~I~~l~~--s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~----------------- 92 (340)
T d1tbga_ 44 QMRTRRTLRGHL------------AKIYAMHW--GTDSRLLVSASQDGKLIIWDSYTTNKVHA----------------- 92 (340)
T ss_dssp CCCEEEEECCCS------------SCEEEEEE--CTTSSEEEEEETTTEEEEEETTTTEEEEE-----------------
T ss_pred ceeeeEEECCCC------------CCEEEEEE--CCCCCEEEEEECCCceeeeecccceeEEE-----------------
Confidence 345667899999 99999999 56788999999999999999988764332
Q ss_pred cccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEE
Q 010256 169 GSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETF 248 (514)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 248 (514)
+..|...|.+++|+|+++++
T Consensus 93 ------------------------------------------------------------~~~~~~~v~~v~~~~~~~~l 112 (340)
T d1tbga_ 93 ------------------------------------------------------------IPLRSSWVMTCAYAPSGNYV 112 (340)
T ss_dssp ------------------------------------------------------------EECSCSCEEEEEECTTSSEE
T ss_pred ------------------------------------------------------------EecccccEEeeEeeccceee
Confidence 14567889999999999999
Q ss_pred EEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceec
Q 010256 249 ISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEE 327 (514)
Q Consensus 249 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 327 (514)
++| .|+.+++|+........... ..+.+|...........+ ..+.....+.....++....... ..
T Consensus 113 ~~~~~d~~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~--- 179 (340)
T d1tbga_ 113 ACGGLDNICSIYNLKTREGNVRVS----RELAGHTGYLSCCRFLDD--NQIVTSSGDTTCALWDIETGQQT----TT--- 179 (340)
T ss_dssp EEEETTCCEEEEESSSSCSCCCEE----EEECCCSSCEEEEEEEET--TEEEEEETTTEEEEEETTTTEEE----EE---
T ss_pred eeecccceeecccccccccccccc----eecccccccccccccccc--ccccccccccccccccccccccc----cc---
Confidence 999 99999999987554332211 134556666666666655 47788888999999988765432 11
Q ss_pred cCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEE
Q 010256 328 QEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 406 (514)
Q Consensus 328 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 406 (514)
...+...+....+.+.+.+++++.. +.|++||++. ++++.++..|... |.+++|
T Consensus 180 ---------~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~-~~~~~~~~~h~~~---------------i~~v~~ 234 (340)
T d1tbga_ 180 ---------FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE-GMCRQTFTGHESD---------------INAICF 234 (340)
T ss_dssp ---------EECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT-TEEEEEECCCSSC---------------EEEEEE
T ss_pred ---------ccccceeEeeeccccccceeEEeecCceEEEEECCC-CcEEEEEeCCCCC---------------eEEEEE
Confidence 2223357888999999999999764 9999999997 8888888887754 449999
Q ss_pred cCCCCEEEEEeCCCcEEEEecCCCceee-eeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCccccc
Q 010256 407 SGDGGRVATGSYSNLFRVFGCSEGSAES-TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDF 485 (514)
Q Consensus 407 s~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~ 485 (514)
+|++++|++|+.||.|++|++....... .....+...+..+.|+|++++|++|+.||.|++++... .+.......|
T Consensus 235 ~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~---~~~~~~~~~H 311 (340)
T d1tbga_ 235 FPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK---ADRAGVLAGH 311 (340)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTT---CCEEEEECCC
T ss_pred CCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCC---CcEEEEEcCC
Confidence 9999999999999999999998775443 23456678899999999999999999999999944322 1222334468
Q ss_pred ccceEEEEEcCCCCEEEEEe-cCcEEEEe
Q 010256 486 SMKLLHLAWHPSENSIACAA-SNSLYMYY 513 (514)
Q Consensus 486 ~~~v~~~~~spd~~~l~~~~-~~~~~i~~ 513 (514)
.+.|++++|+||+++|++++ ++.++||+
T Consensus 312 ~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 312 DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 99999999999999999887 56788985
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=7.4e-33 Score=249.98 Aligned_cols=289 Identities=12% Similarity=0.118 Sum_probs=211.6
Q ss_pred eeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceeccc
Q 010256 92 YKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (514)
Q Consensus 92 ~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (514)
....++||. +.|++++| ++++++|++|+.||+|++||+.+++....
T Consensus 4 ~~~~~~GH~------------~~V~~l~~--s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~-------------------- 49 (299)
T d1nr0a2 4 IDQVRYGHN------------KAITALSS--SADGKTLFSADAEGHINSWDISTGISNRV-------------------- 49 (299)
T ss_dssp EEEEECCCS------------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCCEEEC--------------------
T ss_pred cceEcCCCC------------CCcEEEEE--CCCCCEEEEEcCCCeEEEEECCCCcEEEE--------------------
Confidence 557789999 99999999 56788999999999999999987653221
Q ss_pred ccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe
Q 010256 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 251 (514)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 251 (514)
+..+|...|.+++|+|++++++++
T Consensus 50 --------------------------------------------------------~~~~h~~~v~~v~~~~~g~~~~~~ 73 (299)
T d1nr0a2 50 --------------------------------------------------------FPDVHATMITGIKTTSKGDLFTVS 73 (299)
T ss_dssp --------------------------------------------------------SSCSCSSCEEEEEECTTSCEEEEE
T ss_pred --------------------------------------------------------EcCCCCCcEEEEEeeccceeeccc
Confidence 124677899999999999888777
Q ss_pred cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCC
Q 010256 252 DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAP 331 (514)
Q Consensus 252 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 331 (514)
.|+.+++|+......... ......+...+.+++|+|++ .+++++ .++.+++|+...... ..
T Consensus 74 ~d~~v~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~s~~g-~~~~~~-~~~~i~~~~~~~~~~-------~~----- 134 (299)
T d1nr0a2 74 WDDHLKVVPAGGSGVDSS-----KAVANKLSSQPLGLAVSADG-DIAVAA-CYKHIAIYSHGKLTE-------VP----- 134 (299)
T ss_dssp TTTEEEEECSSSSSSCTT-----SCCEEECSSCEEEEEECTTS-SCEEEE-ESSEEEEEETTEEEE-------EE-----
T ss_pred ceeeEEEeccCCcccccc-----cccccccccccccccccccc-cccccc-ccccccccccccccc-------cc-----
Confidence 999999999874332110 01234467788999999998 665544 567899998543211 11
Q ss_pred CccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCcee-eeeeccccccccccccccCCccceeeEEEcCC
Q 010256 332 GTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVA-TFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (514)
Q Consensus 332 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 409 (514)
....+.+++|+|+++++++|+. +.|++||++. ++... ....|... |.+++|+|+
T Consensus 135 --------~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~-~~~~~~~~~~~~~~---------------i~~~~~~~~ 190 (299)
T d1nr0a2 135 --------ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSG-ASVSEVKTIVHPAE---------------ITSVAFSNN 190 (299)
T ss_dssp --------CSSCEEEEEECTTSCEEEEEETTSEEEEEEEET-TEEEEEEEEECSSC---------------EEEEEECTT
T ss_pred --------ccccccccccccccccccccccccccccccccc-cccccccccccccc---------------ccccccccc
Confidence 1135788999999999999765 9999999985 43322 22333332 458999999
Q ss_pred CCEEEEEeCCCcEEEEecCCCceee--eeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCccccccc
Q 010256 410 GGRVATGSYSNLFRVFGCSEGSAES--TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSM 487 (514)
Q Consensus 410 ~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~ 487 (514)
+++|++++.|+.|++||+.++.... ..+.+|..+|.+++|+|++++|++|+.|+.|++.+-..............+..
T Consensus 191 ~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~ 270 (299)
T d1nr0a2 191 GAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMS 270 (299)
T ss_dssp SSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCC
Confidence 9999999999999999998765433 45678999999999999999999999999999943322221111111112345
Q ss_pred ceEEEEEcCCCCEEEEEe-cCcEEEEeC
Q 010256 488 KLLHLAWHPSENSIACAA-SNSLYMYYA 514 (514)
Q Consensus 488 ~v~~~~~spd~~~l~~~~-~~~~~i~~~ 514 (514)
.|..++| +++++|++++ ++.+.+|+.
T Consensus 271 ~v~~~~~-~~~~~l~s~s~D~~i~iWdl 297 (299)
T d1nr0a2 271 SVNSVIW-LNETTIVSAGQDSNIKFWNV 297 (299)
T ss_dssp CEEEEEE-EETTEEEEEETTSCEEEEEC
T ss_pred cEEEEEE-CCCCEEEEEeCCCEEEEEec
Confidence 6777766 4566777666 677899973
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=7.5e-34 Score=259.27 Aligned_cols=301 Identities=15% Similarity=0.173 Sum_probs=207.8
Q ss_pred cceEEEEEcCCCCeEEEecCCC-eEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccc
Q 010256 36 DIISAIEFDKSGDHLATGDRGG-RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEK 114 (514)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 114 (514)
..+++++|+|+|+.||.++.+. .|+.|+....+. .....+.+|. ...
T Consensus 18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~---------------------~~~~~~~gh~-----------~~~ 65 (325)
T d1pgua1 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKV---------------------PPVVQFTGHG-----------SSV 65 (325)
T ss_dssp TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSS---------------------CSEEEECTTT-----------TSC
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCc---------------------cceEEEeCCC-----------CCC
Confidence 3578999999999999986554 244555332221 1345567764 157
Q ss_pred eeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCC
Q 010256 115 INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (514)
Q Consensus 115 v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (514)
|++++|+|..++.+|++|+.||+|++||+..++.................+.+. .++|+++++.+..
T Consensus 66 v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~-------~v~~s~~~~~l~~------ 132 (325)
T d1pgua1 66 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPIS-------DISWDFEGRRLCV------ 132 (325)
T ss_dssp EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEE-------EEEECTTSSEEEE------
T ss_pred EEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEE-------EEEECCCCCccce------
Confidence 999999988888999999999999999987643221111111111111234444 7899999998711
Q ss_pred CCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCE-EEEe-cCCeEEEEeccCCCceeeeec
Q 010256 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGET-FISA-DDLRINLWNLEISNQSFNIVD 272 (514)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~-~d~~i~iwd~~~~~~~~~~~~ 272 (514)
+..+.++.+++|+ ... ..+... +.+|...|.+++|+|++.. ++++ .|+.+++||....+.....
T Consensus 133 ----~~~~~~~~~~~~~-~~~------~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~-- 198 (325)
T d1pgua1 133 ----VGEGRDNFGVFIS-WDS------GNSLGE-VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD-- 198 (325)
T ss_dssp ----EECCSSCSEEEEE-TTT------CCEEEE-CCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEE--
T ss_pred ----eeccccceEEEEe-ecc------ccccee-eeecccccccccccccccceEEEeecccccccccccccccceec--
Confidence 2334567788877 211 223333 3789999999999999875 5666 8999999998755443332
Q ss_pred cCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEe--
Q 010256 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA-- 350 (514)
Q Consensus 273 ~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-- 350 (514)
.....|...|.+++|+|++..+|++++.|+.|++||+++++. ++.+.. |..++.++.|+
T Consensus 199 ---~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~----~~~l~~------------~~~~v~~~~~s~~ 259 (325)
T d1pgua1 199 ---RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF----LKYIED------------DQEPVQGGIFALS 259 (325)
T ss_dssp ---CSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCE----EEECCB------------TTBCCCSCEEEEE
T ss_pred ---ccccCCCCccEEeeeccccceeccccccccceeeeeeccccc----cccccc------------cccccccceeeee
Confidence 134567888999999998658999999999999999998775 333333 33445444444
Q ss_pred -cCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEec
Q 010256 351 -RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (514)
Q Consensus 351 -~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 427 (514)
|+|++|++++ |+.|+|||+++ ++++..+..+....... ..++.+.++ .+|++++.||.|++||+
T Consensus 260 ~~dg~~l~s~s~D~~i~iwd~~~-~~~~~~~~~~~~~~~~~-----------~~~~~~~~~-~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 260 WLDSQKFATVGADATIRVWDVTT-SKCVQKWTLDKQQLGNQ-----------QVGVVATGN-GRIISLSLDGTLNFYEL 325 (325)
T ss_dssp ESSSSEEEEEETTSEEEEEETTT-TEEEEEEECCTTCGGGC-----------EEEEEEEET-TEEEEEETTSCEEEEET
T ss_pred ccCCCEEEEEeCCCeEEEEECCC-CCEEEEEEecCCcccCe-----------EEEEEECCC-CEEEEEECCCEEEEEEC
Confidence 6889999875 59999999997 88888887766432100 113344433 47889999999999996
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-32 Score=252.58 Aligned_cols=310 Identities=15% Similarity=0.198 Sum_probs=219.6
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.+.|.+ +++++|++||||+.||+|+|||+.+++ .+.++.+|.
T Consensus 12 l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~-----------------------~~~~~~~h~---------- 57 (342)
T d2ovrb2 12 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK-----------------------CLRTLVGHT---------- 57 (342)
T ss_dssp EECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC-----------------------EEEECCCCS----------
T ss_pred ECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCC-----------------------EEEEEeCCC----------
Confidence 4589999865 466679999999999999999998766 456788998
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|.+++|. ++ +|++++.|+.+++|+................ ...........
T Consensus 58 --~~V~~v~~~--~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~---- 110 (342)
T d2ovrb2 58 --GGVWSSQMR--DN--IIISGSTDRTLKVWNAETGECIHTLYGHTST-----------------VRCMHLHEKRV---- 110 (342)
T ss_dssp --SCEEEEEEE--TT--EEEEEETTSCEEEEETTTTEEEEEECCCSSC-----------------EEEEEEETTEE----
T ss_pred --CCEEEEEeC--CC--ccccceecccccccccccccceeccccccee-----------------Eeeeecccccc----
Confidence 889999995 33 8999999999999999887755544333111 11122222333
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~ 269 (514)
..+..++.+.+|+ ...... ...+ ..+.. . .....+....++.+ .|+.|++||.+......
T Consensus 111 --------~~~~~d~~i~~~~-~~~~~~------~~~~-~~~~~-~-~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~- 171 (342)
T d2ovrb2 111 --------VSGSRDATLRVWD-IETGQC------LHVL-MGHVA-A-VRCVQYDGRRVVSGAYDFMVKVWDPETETCLH- 171 (342)
T ss_dssp --------EEEETTSEEEEEE-SSSCCE------EEEE-ECCSS-C-EEEEEECSSCEEEEETTSCEEEEEGGGTEEEE-
T ss_pred --------cccccceeEEEee-cccccc------eeee-ecccc-c-ceeeccccceeeeecCCCeEEEeecccceeeE-
Confidence 6677888899888 322211 1111 11112 1 22334455566666 99999999998654433
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
.+.+|...+..+ .+++ ..+++|+.||.|++||++.++.. .. +.+|...+.++++
T Consensus 172 -------~~~~~~~~~~~~--~~~~-~~l~s~~~dg~i~~~d~~~~~~~----~~------------~~~~~~~v~~~~~ 225 (342)
T d2ovrb2 172 -------TLQGHTNRVYSL--QFDG-IHVVSGSLDTSIRVWDVETGNCI----HT------------LTGHQSLTSGMEL 225 (342)
T ss_dssp -------EECCCSSCEEEE--EECS-SEEEEEETTSCEEEEETTTCCEE----EE------------ECCCCSCEEEEEE
T ss_pred -------EEcCcccccccc--cCCC-CEEEEEeCCCeEEEeecccceee----eE------------ecccccceeEEec
Confidence 345566655554 4466 78999999999999999887652 22 3445567887777
Q ss_pred ecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecC
Q 010256 350 ARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCS 428 (514)
Q Consensus 350 s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 428 (514)
+ +++|++++. +.|++||+.. .+....+..+..... . ..+++++++++++|+.||.|++||++
T Consensus 226 ~--~~~l~s~s~d~~i~iwd~~~-~~~~~~~~~~~~~~~------------~--~~~~~~~~~~~~s~s~Dg~i~iwd~~ 288 (342)
T d2ovrb2 226 K--DNILVSGNADSTVKIWDIKT-GQCLQTLQGPNKHQS------------A--VTCLQFNKNFVITSSDDGTVKLWDLK 288 (342)
T ss_dssp E--TTEEEEEETTSCEEEEETTT-CCEEEEECSTTSCSS------------C--EEEEEECSSEEEEEETTSEEEEEETT
T ss_pred C--CCEEEEEcCCCEEEEEeccc-ccccccccccceeee------------c--eeecccCCCeeEEEcCCCEEEEEECC
Confidence 6 468888764 9999999987 666666655443221 1 33445567899999999999999999
Q ss_pred CCceeeeee-----cCCCcceeEEEECCCCCceeecCCCCe
Q 010256 429 EGSAESTTL-----EASKNPMRRQVQTPSRPSRPLGSLSGV 464 (514)
Q Consensus 429 ~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~s~s~d~~ 464 (514)
+++.. ..+ .+|...|++++|+|++.++++|+.||+
T Consensus 289 tg~~i-~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt 328 (342)
T d2ovrb2 289 TGEFI-RNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT 328 (342)
T ss_dssp TCCEE-EEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSS
T ss_pred CCCEE-EEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCC
Confidence 88654 333 367889999999999999999999986
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.1e-31 Score=251.95 Aligned_cols=315 Identities=9% Similarity=0.122 Sum_probs=203.3
Q ss_pred cccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccc
Q 010256 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (514)
.+|.+.|.++++++ ++|+|++.|++|+|||..+.+... |.... .....|.
T Consensus 11 ~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~----------------~~~~~-~~~~~~~----------- 60 (393)
T d1sq9a_ 11 KAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNEN----------------PKDKS-YSHFVHK----------- 60 (393)
T ss_dssp SCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCC----------------GGGGE-EEEECCT-----------
T ss_pred CcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCc----------------cccee-Eeeeecc-----------
Confidence 48999999999874 699999999999999976554210 00001 1111222
Q ss_pred ccceeEE---EEee--CCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcc
Q 010256 112 EEKINKI---RWCQ--SANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (514)
Q Consensus 112 ~~~v~~i---~~~~--~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 186 (514)
..+..+ ...+ ..++.++++++.||.|++|++............ ....
T Consensus 61 -~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~--------------------------~~~~- 112 (393)
T d1sq9a_ 61 -SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFE--------------------------KLDL- 112 (393)
T ss_dssp -TCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEE--------------------------EECC-
T ss_pred -CCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeecc--------------------------ccce-
Confidence 112211 1111 123346778899999999987643210000000 0000
Q ss_pred ccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC-----CCEEEEe-cCCeEEEEe
Q 010256 187 ERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-----GETFISA-DDLRINLWN 260 (514)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~~l~s~-~d~~i~iwd 260 (514)
.. ...+...+..++|.++ +.+++++ .|+++++|+
T Consensus 113 -----------------------------~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~ 152 (393)
T d1sq9a_ 113 -----------------------------LD-----------SDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWK 152 (393)
T ss_dssp -----------------------------SC-----------TTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEE
T ss_pred -----------------------------ee-----------eccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEE
Confidence 00 0223345666777665 4567777 899999999
Q ss_pred ccCCCceeee----------eccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCC
Q 010256 261 LEISNQSFNI----------VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEA 330 (514)
Q Consensus 261 ~~~~~~~~~~----------~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 330 (514)
+......... ..........+...+.+++|+|++ +|++|+.|+.|++||+++++. +..++..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~----~~~~~~~-- 224 (393)
T d1sq9a_ 153 FHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRP----LYNFESQ-- 224 (393)
T ss_dssp EESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEE----EEEEECC--
T ss_pred eecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeeccccc----ccccccc--
Confidence 8633211000 000011233456678999999987 889999999999999998875 3333332
Q ss_pred CCccceeeccccceeEEEEecCCCEEEEEeC-C---eEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEE
Q 010256 331 PGTRSFFTEIIASISDIKFARNGRHILSRDY-M---TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL 406 (514)
Q Consensus 331 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 406 (514)
..+.+|..+|.+++|+|+|++|++|++ + .|++||+.+ ++.+..+............+. +.-..|++++|
T Consensus 225 ----~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~-g~~~~~l~~~~~~~~~~~~~~--gH~~~V~~l~f 297 (393)
T d1sq9a_ 225 ----HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF-GERIGSLSVPTHSSQASLGEF--AHSSWVMSLSF 297 (393)
T ss_dssp ----C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT-CCEEEEECBC--------CCB--SBSSCEEEEEE
T ss_pred ----cccccccceEEEcccccccceeeeecCCCCcceeeeccccc-ceeeeeeccccccccceeeee--cccCceeeecc
Confidence 235678899999999999999999753 3 599999997 777777754332211111111 11123669999
Q ss_pred cCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCccee----EEEECCCCCceeecC
Q 010256 407 SGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMR----RQVQTPSRPSRPLGS 460 (514)
Q Consensus 407 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~----~~~~~~~~~~l~s~s 460 (514)
+||+++|++|+.|++|+|||++++ ....++++|.+.|. .++++|++..+++++
T Consensus 298 spd~~~l~S~s~D~~v~vWd~~~g-~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~ 354 (393)
T d1sq9a_ 298 NDSGETLCSAGWDGKLRFWDVKTK-ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354 (393)
T ss_dssp CSSSSEEEEEETTSEEEEEETTTT-EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred CCCCCeeEEECCCCEEEEEECCCC-CEEEEECCcCCcccCCccEEEECCCCCEEEEcc
Confidence 999999999999999999999998 45588999998886 478999998887665
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=9.3e-32 Score=250.29 Aligned_cols=256 Identities=13% Similarity=0.140 Sum_probs=191.6
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
++|++++| +++|++|++++.|+.|++||+.+++......
T Consensus 8 ~pIt~~~~--s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~--------------------------------------- 46 (371)
T d1k8kc_ 8 EPISCHAW--NKDRTQIAICPNNHEVHIYEKSGNKWVQVHE--------------------------------------- 46 (371)
T ss_dssp SCCCEEEE--CTTSSEEEEECSSSEEEEEEEETTEEEEEEE---------------------------------------
T ss_pred CCeEEEEE--CCCCCEEEEEeCCCEEEEEECCCCCEEEEEE---------------------------------------
Confidence 67999999 6788899999999999999987765332211
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
+.+|.++|.+++|+|++++|+++ .|++|++||+++.......
T Consensus 47 ------------------------------------l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~- 89 (371)
T d1k8kc_ 47 ------------------------------------LKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTL- 89 (371)
T ss_dssp ------------------------------------EECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEE-
T ss_pred ------------------------------------ecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccc-
Confidence 36799999999999999999999 9999999999855433222
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
.+.+|...|.+++|+|++ +.|++|+.|+.+++|++........ .. .....|...|.+++|+|
T Consensus 90 -----~~~~~~~~v~~i~~~p~~-~~l~~~s~d~~i~i~~~~~~~~~~~----~~--------~~~~~~~~~v~~v~~~p 151 (371)
T d1k8kc_ 90 -----VILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWV----CK--------HIKKPIRSTVLSLDWHP 151 (371)
T ss_dssp -----ECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEE----EE--------EECTTCCSCEEEEEECT
T ss_pred -----cccccccccccccccccc-ccceeecccCcceeeeeeccccccc----cc--------ccccccccccccccccc
Confidence 456688899999999999 8999999999999999876543211 11 11344668899999999
Q ss_pred CCCEEEEEe-CCeEEEEEccCCCCceeeeeeccc-c-cccccc-ccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEec
Q 010256 352 NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEH-L-RPKLCD-LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (514)
Q Consensus 352 ~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~-~-~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 427 (514)
++++|++|+ |+.|++||... ............ . ...... .........|.+++|+|+|++|++++.|+.|++||+
T Consensus 152 ~~~~l~s~s~D~~v~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~ 230 (371)
T d1k8kc_ 152 NSVLLAAGSCDFKCRIFSAYI-KEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA 230 (371)
T ss_dssp TSSEEEEEETTSCEEEEECCC-TTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred cccceeccccCcEEEEEeecc-CccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEee
Confidence 999999986 59999999875 221111100000 0 000000 000111223568999999999999999999999999
Q ss_pred CCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 428 SEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 428 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.++.. ...+..|..+|.+++|+|++++|++|+ |+.+++
T Consensus 231 ~~~~~-~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~ 268 (371)
T d1k8kc_ 231 DKKMA-VATLASETLPLLAVTFITESSLVAAGH-DCFPVL 268 (371)
T ss_dssp GGTTE-EEEEECSSCCEEEEEEEETTEEEEEET-TSSCEE
T ss_pred ecccc-eeeeecccccceeeeecCCCCEEEEEc-CCceEE
Confidence 98744 478889999999999999999998877 555544
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.2e-30 Score=239.22 Aligned_cols=325 Identities=12% Similarity=0.155 Sum_probs=225.6
Q ss_pred eeeeccCCCccccccccccccc-eeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceeccc
Q 010256 93 KTEFQSHEPEFDYLKSLEIEEK-INKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSH 171 (514)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~-v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (514)
..+++||. +. |+|+.| + +++|++|+.||+|++||+.+++....+..+ .+.|.
T Consensus 5 ~~tL~GH~------------~~vitc~~~--~--~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H--------~~~V~--- 57 (355)
T d1nexb2 5 RTTLRGHM------------TSVITCLQF--E--DNYVITGADDKMIRVYDSINKKFLLQLSGH--------DGGVW--- 57 (355)
T ss_dssp EEEEECCS------------SSCEEEEEE--E--TTEEEEEETTTEEEEEETTTTEEEEEEECC--------SSCEE---
T ss_pred cEEECCcC------------CCcEEEEEE--C--CCEEEEEeCCCeEEEEECCCCcEEEEEECC--------CCCEE---
Confidence 35688997 55 467766 3 469999999999999999999887776654 34555
Q ss_pred ccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe
Q 010256 172 VSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA 251 (514)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 251 (514)
+++|+|++ .+ ++++.|+.|++|+ ........ ......+........+.+++..++++
T Consensus 58 ----~l~~s~~~-~l------------~s~s~D~~i~iw~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (355)
T d1nexb2 58 ----ALKYAHGG-IL------------VSGSTDRTVRVWD-IKKGCCTH-----VFEGHNSTVRCLDIVEYKNIKYIVTG 114 (355)
T ss_dssp ----EEEEETTT-EE------------EEEETTCCEEEEE-TTTTEEEE-----EECCCSSCEEEEEEEEETTEEEEEEE
T ss_pred ----EEEEcCCC-EE------------EEEeccccccccc-cccccccc-----ccccccccccccccccccccceeeee
Confidence 78898865 55 8999999999999 33222111 11112334445667788999999998
Q ss_pred -cCCeEEEEeccCCCceeeeeccC--------C-------CcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCC
Q 010256 252 -DDLRINLWNLEISNQSFNIVDVK--------P-------ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 315 (514)
Q Consensus 252 -~d~~i~iwd~~~~~~~~~~~~~~--------~-------~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~ 315 (514)
.|+.|++||+++........... + .....|...+. .+.+++ ++++++..|+.|++||++++
T Consensus 115 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~-~~~~~~~~d~~i~~~d~~~~ 191 (355)
T d1nexb2 115 SRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVSGHG-NIVVSGSYDNTLIVWDVAQM 191 (355)
T ss_dssp ETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEE--EEEEET-TEEEEEETTSCEEEEETTTT
T ss_pred cCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccc--cccccc-ceeeeecccceeeeeecccc
Confidence 99999999998654322110000 0 00111222332 345566 79999999999999999887
Q ss_pred ccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccc
Q 010256 316 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYE 394 (514)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (514)
+.. .. ..++...+.++.|+|++.++++++. +.|++||+.+ +..+..+.+|...+
T Consensus 192 ~~~----~~------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~~~~~~~~h~~~v-------- 246 (355)
T d1nexb2 192 KCL----YI------------LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN-GELMYTLQGHTALV-------- 246 (355)
T ss_dssp EEE----EE------------ECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT-CCEEEEECCCSSCC--------
T ss_pred cce----ee------------eeccccccccccccccceeeecccccceEEeeeccc-cccccccccccccc--------
Confidence 652 22 2334467899999999999999765 9999999997 88888888887653
Q ss_pred cCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEE-ECCCCCceeecCCCCeEEEeeCCCC
Q 010256 395 NDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQV-QTPSRPSRPLGSLSGVVRRVKGADN 473 (514)
Q Consensus 395 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~l~s~s~d~~v~i~~~~~~ 473 (514)
.+++|+ +++|++++.||.|++||+.+.. ..+..|...+..+. ++++++++++| .|+.|++.+ +
T Consensus 247 -------~~~~~~--~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd---~ 310 (355)
T d1nexb2 247 -------GLLRLS--DKFLVSAAADGSIRGWDANDYS---RKFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYN---L 310 (355)
T ss_dssp -------CEEEEC--SSEEEEECTTSEEEEEETTTCC---EEEEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEE---T
T ss_pred -------cccccc--cceeeeeecccccccccccccc---eecccccCCceEEEEEcCCCCEEEEE-eCCEEEEEE---C
Confidence 277775 5799999999999999998764 34556666666654 56677776666 589999933 2
Q ss_pred Ccccc-CCcccccccceEEEEEcCCCCEEEEEe-cCcEEEE
Q 010256 474 SALDA-NGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMY 512 (514)
Q Consensus 474 ~~~~~-~~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~~i~ 512 (514)
...++ ......|...|.+++|+|+ .+|++++ ++.++||
T Consensus 311 ~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~ 350 (355)
T d1nexb2 311 RSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLE 350 (355)
T ss_dssp TTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEE
T ss_pred CCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEE
Confidence 21112 1234468899999999987 4666666 5556676
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.4e-31 Score=241.77 Aligned_cols=326 Identities=10% Similarity=0.068 Sum_probs=218.7
Q ss_pred cccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccc
Q 010256 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (514)
-+|.+.|++|+|+|++++||+|+.||+|+|||+.++... . ......+|.
T Consensus 8 ~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~-------------------~-~~~~~~~h~----------- 56 (342)
T d1yfqa_ 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN-------------------V-DLLQSLRYK----------- 56 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE-------------------E-EEEEEEECS-----------
T ss_pred CCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcc-------------------e-EEEEecCCC-----------
Confidence 479999999999999999999999999999999765431 1 112233576
Q ss_pred ccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
..|.+++|+|. .+.+|++|+.|+.|++|++..+............ .. ....+.++...+
T Consensus 57 -~~V~~v~f~~~-~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~-------~~-------~~~~~~~~~~~~----- 115 (342)
T d1yfqa_ 57 -HPLLCCNFIDN-TDLQIYVGTVQGEILKVDLIGSPSFQALTNNEAN-------LG-------ICRICKYGDDKL----- 115 (342)
T ss_dssp -SCEEEEEEEES-SSEEEEEEETTSCEEEECSSSSSSEEECBSCCCC-------SC-------EEEEEEETTTEE-----
T ss_pred -CCEEEEEEeCC-CCCEEEEcccccceeeeecccccccccccccccc-------cc-------cccccccccccc-----
Confidence 88999999863 3568999999999999999877544433322111 00 023445555655
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeee
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 270 (514)
++++.++.+++|| +............ ............+.+.+.+..++++ .|+.|++||+.........
T Consensus 116 -------~~~~~~~~~~~wd-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~ 186 (342)
T d1yfqa_ 116 -------IAASWDGLIEVID-PRNYGDGVIAVKN-LNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGT 186 (342)
T ss_dssp -------EEEETTSEEEEEC-HHHHTTBCEEEEE-SCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCE
T ss_pred -------cccccccccceee-ccccccceeeecc-cccccccceeeeeeeeccCCceeeecCCCcEEEEecccCccccee
Confidence 8889999999999 3322211110000 0001223344566778888899998 9999999999866544322
Q ss_pred eccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEe
Q 010256 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (514)
Q Consensus 271 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 350 (514)
. ........+.+..+.+.....+++++.||.+.+|++................. ........+|...+++++|+
T Consensus 187 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~l~~s 260 (342)
T d1yfqa_ 187 I-----EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC-HRLNLKDTNLAYPVNSIEFS 260 (342)
T ss_dssp E-----EECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC-CCCCTTCCSSCCCEEEEEEC
T ss_pred e-----eecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeee-eeeccCCCcccccceeEEec
Confidence 1 12234455677777665558999999999999999876543221111111100 00111234567789999999
Q ss_pred cCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCC
Q 010256 351 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 351 ~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 429 (514)
|++++|++|+ ||.|++||+++ ++.+..+..+... ..++|+|++++|++++.|+.+++|....
T Consensus 261 p~~~~lasg~~Dg~v~vWD~~~-~~~l~~~~~~~~~----------------~~~~~s~~~~~l~~a~sdd~~~~~~~~~ 323 (342)
T d1yfqa_ 261 PRHKFLYTAGSDGIISCWNLQT-RKKIKNFAKFNED----------------SVVKIACSDNILCLATSDDTFKTNAAID 323 (342)
T ss_dssp TTTCCEEEEETTSCEEEEETTT-TEEEEECCCCSSS----------------EEEEEEECSSEEEEEEECTHHHHCSSSC
T ss_pred CCccEEEEECCCCEEEEEECCC-CcEEEEecCCCCC----------------EEEEEEeCCCEEEEEEcCCcEEEeeeeC
Confidence 9999999976 49999999997 7777766543321 2688999999999999999888886542
Q ss_pred CceeeeeecCCCcceeE
Q 010256 430 GSAESTTLEASKNPMRR 446 (514)
Q Consensus 430 ~~~~~~~~~~~~~~v~~ 446 (514)
..++.|...|..
T Consensus 324 -----~~~~~~~~~i~~ 335 (342)
T d1yfqa_ 324 -----QTIELNASSIYI 335 (342)
T ss_dssp -----TTSCCCCCEEEE
T ss_pred -----CCccCCCCeEEE
Confidence 234455555543
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=4.9e-30 Score=235.49 Aligned_cols=317 Identities=11% Similarity=0.148 Sum_probs=215.7
Q ss_pred eeeeeeccCCCccccccccccccceeE-EEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceec
Q 010256 91 RYKTEFQSHEPEFDYLKSLEIEEKINK-IRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFG 169 (514)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~-i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 169 (514)
+....++||. +.|.+ +.| +|++|++|+.||+|++||+.++++...+..+ .+.|.
T Consensus 7 ~~~~~l~GH~------------~~V~s~~~~----~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h--------~~~V~- 61 (342)
T d2ovrb2 7 KSPKVLKGHD------------DHVITCLQF----CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGH--------TGGVW- 61 (342)
T ss_dssp CCCEEEECST------------TSCEEEEEE----ETTEEEEEETTSCEEEEETTTCCEEEECCCC--------SSCEE-
T ss_pred CcCEEECCcC------------CceEEEEEE----CCCEEEEEeCCCeEEEEECCCCCEEEEEeCC--------CCCEE-
Confidence 3556789998 77754 444 4669999999999999999999877665543 34454
Q ss_pred ccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEE
Q 010256 170 SHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI 249 (514)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 249 (514)
++.|+++ .+ ++++.|+.+++|+ ........ . ...+...+..... ....+.
T Consensus 62 ------~v~~~~~--~l------------~s~s~D~~~~~~~-~~~~~~~~------~-~~~~~~~~~~~~~--~~~~~~ 111 (342)
T d2ovrb2 62 ------SSQMRDN--II------------ISGSTDRTLKVWN-AETGECIH------T-LYGHTSTVRCMHL--HEKRVV 111 (342)
T ss_dssp ------EEEEETT--EE------------EEEETTSCEEEEE-TTTTEEEE------E-ECCCSSCEEEEEE--ETTEEE
T ss_pred ------EEEeCCC--cc------------ccceecccccccc-ccccccee------c-ccccceeEeeeec--cccccc
Confidence 6677654 55 8999999999999 32221111 1 1233344444433 345666
Q ss_pred Ee-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceecc
Q 010256 250 SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQ 328 (514)
Q Consensus 250 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 328 (514)
.+ .|+.+.+|+..+.+..... ...... .....+.. ..+++++.|+.|++||++..... ..+
T Consensus 112 ~~~~d~~i~~~~~~~~~~~~~~--------~~~~~~--~~~~~~~~-~~~~~~~~d~~i~~~d~~~~~~~----~~~--- 173 (342)
T d2ovrb2 112 SGSRDATLRVWDIETGQCLHVL--------MGHVAA--VRCVQYDG-RRVVSGAYDFMVKVWDPETETCL----HTL--- 173 (342)
T ss_dssp EEETTSEEEEEESSSCCEEEEE--------ECCSSC--EEEEEECS-SCEEEEETTSCEEEEEGGGTEEE----EEE---
T ss_pred ccccceeEEEeecccccceeee--------eccccc--ceeecccc-ceeeeecCCCeEEEeecccceee----EEE---
Confidence 66 8999999999876654322 112222 22334444 67889999999999999876642 222
Q ss_pred CCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEc
Q 010256 329 EAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLS 407 (514)
Q Consensus 329 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 407 (514)
.+|...+ ..+++++.++++++ |+.|++||++. ++++..+..|...+ .++ +
T Consensus 174 ---------~~~~~~~--~~~~~~~~~l~s~~~dg~i~~~d~~~-~~~~~~~~~~~~~v---------------~~~--~ 224 (342)
T d2ovrb2 174 ---------QGHTNRV--YSLQFDGIHVVSGSLDTSIRVWDVET-GNCIHTLTGHQSLT---------------SGM--E 224 (342)
T ss_dssp ---------CCCSSCE--EEEEECSSEEEEEETTSCEEEEETTT-CCEEEEECCCCSCE---------------EEE--E
T ss_pred ---------cCccccc--ccccCCCCEEEEEeCCCeEEEeeccc-ceeeeEecccccce---------------eEE--e
Confidence 2333334 44556788999976 59999999997 88888888776542 244 4
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCceeeeeecC---CCcceeEEEECCCCCceeecCCCCeEEEeeCC--CCCccccC-Cc
Q 010256 408 GDGGRVATGSYSNLFRVFGCSEGSAESTTLEA---SKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGA--DNSALDAN-GN 481 (514)
Q Consensus 408 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~--~~~~~~~~-~~ 481 (514)
+++++|++++.||.|++||+...+.. ..+.. |...+..+.+ ++.++++++.||+|++.+-. +... .+. ..
T Consensus 225 ~~~~~l~s~s~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~-~~~~~~ 300 (342)
T d2ovrb2 225 LKDNILVSGNADSTVKIWDIKTGQCL-QTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIR-NLVTLE 300 (342)
T ss_dssp EETTEEEEEETTSCEEEEETTTCCEE-EEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEE-EEEECT
T ss_pred cCCCEEEEEcCCCEEEEEeccccccc-ccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEE-EEeccc
Confidence 45679999999999999999876443 44443 4555555555 45699999999999993321 1111 111 11
Q ss_pred ccccccceEEEEEcCCCCEEEEEecCc-----EEEEe
Q 010256 482 AFDFSMKLLHLAWHPSENSIACAASNS-----LYMYY 513 (514)
Q Consensus 482 ~~~~~~~v~~~~~spd~~~l~~~~~~~-----~~i~~ 513 (514)
...|...|.+++|+|++.+||+|+.++ +.+|.
T Consensus 301 ~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~D 337 (342)
T d2ovrb2 301 SGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337 (342)
T ss_dssp TGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEE
T ss_pred CCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEe
Confidence 224678899999999999999999776 67764
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=4.9e-29 Score=223.43 Aligned_cols=270 Identities=13% Similarity=0.271 Sum_probs=204.6
Q ss_pred cccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccccccc
Q 010256 32 VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEI 111 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 111 (514)
.+|...|+|++| ||++||||+.||+|+|||+.+++ ...++.+|.
T Consensus 12 ~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~-----------------------~~~~l~~H~----------- 55 (293)
T d1p22a2 12 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE-----------------------CKRILTGHT----------- 55 (293)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC-----------------------EEEEECCCS-----------
T ss_pred CCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCc-----------------------EEEEEecCC-----------
Confidence 367889999764 79999999999999999998766 457788998
Q ss_pred ccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 112 EEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 112 ~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
..|++++| ++++|++++.|+.|++|++..+.........
T Consensus 56 -~~V~~v~~----~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~------------------------------------ 94 (293)
T d1p22a2 56 -GSVLCLQY----DERVIITGSSDSTVRVWDVNTGEMLNTLIHH------------------------------------ 94 (293)
T ss_dssp -SCEEEEEC----CSSEEEEEETTSCEEEEESSSCCEEEEECCC------------------------------------
T ss_pred -CCEeeeec----ccceeeccccccccccccccccccccccccc------------------------------------
Confidence 88999988 3469999999999999999887643322111
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeee
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~ 270 (514)
......+.+....++++ .++.+.+|+..........
T Consensus 95 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (293)
T d1p22a2 95 -------------------------------------------CEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLR 131 (293)
T ss_dssp -------------------------------------------CSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEE
T ss_pred -------------------------------------------ccccccccccccceeecccccceeEeecccccccccc
Confidence 00112233445567777 9999999999865543322
Q ss_pred eccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEe
Q 010256 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (514)
Q Consensus 271 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 350 (514)
. .+..|...+..+.+.+ ..+++++.|+.|++||+++++.. .. +.++...+..+.++
T Consensus 132 ~-----~~~~~~~~v~~~~~~~---~~~~~~s~d~~i~~~d~~~~~~~----~~------------~~~~~~~v~~~~~~ 187 (293)
T d1p22a2 132 R-----VLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWNTSTCEFV----RT------------LNGHKRGIACLQYR 187 (293)
T ss_dssp E-----EECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTTCCEE----EE------------EECCSSCEEEEEEE
T ss_pred c-----cccccccccccceecc---cccccccCCCceeeecCCCCcEE----EE------------EcccccccccccCC
Confidence 1 3456778888888765 46788999999999999987652 22 33344567777665
Q ss_pred cCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCC
Q 010256 351 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSE 429 (514)
Q Consensus 351 ~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 429 (514)
+.+++++. |+.|++||+++ ...+.....+... ...+++++.+|++|+.||.|++||+..
T Consensus 188 --~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~-----------------v~~~~~~~~~l~sg~~dg~i~iwd~~~ 247 (293)
T d1p22a2 188 --DRLVVSGSSDNTIRLWDIEC-GACLRVLEGHEEL-----------------VRCIRFDNKRIVSGAYDGKIKVWDLVA 247 (293)
T ss_dssp --TTEEEEEETTSCEEEEETTT-CCEEEEECCCSSC-----------------EEEEECCSSEEEEEETTSCEEEEEHHH
T ss_pred --CCeEEEecCCCEEEEEeccc-ceeeeeeccccee-----------------eeeccccceEEEEEcCCCEEEEEECCC
Confidence 56788865 59999999997 7777777666543 345778899999999999999999753
Q ss_pred C--------ceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 430 G--------SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 430 ~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
. ......+.+|..+|.+++| ++++|+++|.|++|++
T Consensus 248 ~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~i 291 (293)
T d1p22a2 248 ALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILI 291 (293)
T ss_dssp HTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEE
T ss_pred CccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCEEEE
Confidence 2 2234778899999999998 4678999999999998
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=4.5e-30 Score=234.02 Aligned_cols=294 Identities=10% Similarity=0.041 Sum_probs=204.5
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCC-eEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeecc--CCCccccc
Q 010256 113 EKINKIRWCQSANSALYLLSTNDK-TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA--NGGCGERN 189 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~l~~~ 189 (514)
..+++++|+ +++..|+.++.+. .|+.|+....+......+..+. ...+. .++|+| +|+.+
T Consensus 18 ~~~t~l~~~--~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~-----~~~v~-------~v~fsP~~~g~~l--- 80 (325)
T d1pgua1 18 NFTTHLSYD--PTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHG-----SSVVT-------TVKFSPIKGSQYL--- 80 (325)
T ss_dssp TCCCCCEEE--TTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTT-----TSCEE-------EEEECSSTTCCEE---
T ss_pred CCeEEEEEC--CCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCC-----CCCEE-------EEEEeeCCCCCEE---
Confidence 457888995 5566888776543 4667765544322222222111 12344 789998 45666
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe---cCCeEEEEeccCCCc
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA---DDLRINLWNLEISNQ 266 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~---~d~~i~iwd~~~~~~ 266 (514)
++++.||+|++||+...................|.++|.+++|++++++|+++ .++.+++|+.++++.
T Consensus 81 ---------asgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~ 151 (325)
T d1pgua1 81 ---------CSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNS 151 (325)
T ss_dssp ---------EEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCE
T ss_pred ---------EEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccccc
Confidence 89999999999993222221111111111125688999999999999998875 478899999986654
Q ss_pred eeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeE
Q 010256 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISD 346 (514)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 346 (514)
.. .+.+|...|.+++|+|+++.++++++.|+.+++||+...+... .+. .+.+|...|.+
T Consensus 152 ~~--------~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~----~~~---------~~~~~~~~v~~ 210 (325)
T d1pgua1 152 LG--------EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA----SDR---------THHKQGSFVRD 210 (325)
T ss_dssp EE--------ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEE----EEC---------SSSCTTCCEEE
T ss_pred ce--------eeeecccccccccccccccceEEEeecccccccccccccccce----ecc---------cccCCCCccEE
Confidence 33 4567899999999999986678899999999999998765421 111 12346678999
Q ss_pred EEEecC-CCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEE
Q 010256 347 IKFARN-GRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRV 424 (514)
Q Consensus 347 ~~~s~~-g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 424 (514)
++|+|+ +.++++++ |+.|++||+++ ++.+..+..|...... .+++++| |||++|++++.|+.|+|
T Consensus 211 v~~~pd~~~~l~s~~~d~~i~iwd~~~-~~~~~~l~~~~~~v~~-----------~~~s~~~-~dg~~l~s~s~D~~i~i 277 (325)
T d1pgua1 211 VEFSPDSGEFVITVGSDRKISCFDGKS-GEFLKYIEDDQEPVQG-----------GIFALSW-LDSQKFATVGADATIRV 277 (325)
T ss_dssp EEECSTTCCEEEEEETTCCEEEEETTT-CCEEEECCBTTBCCCS-----------CEEEEEE-SSSSEEEEEETTSEEEE
T ss_pred eeeccccceeccccccccceeeeeecc-cccccccccccccccc-----------ceeeeec-cCCCEEEEEeCCCeEEE
Confidence 999996 67888865 59999999997 8888888887654320 0123343 68999999999999999
Q ss_pred EecCCCceeeeeecCCCc--ceeEEEECCC-CCceeecCCCCeEEE
Q 010256 425 FGCSEGSAESTTLEASKN--PMRRQVQTPS-RPSRPLGSLSGVVRR 467 (514)
Q Consensus 425 wd~~~~~~~~~~~~~~~~--~v~~~~~~~~-~~~l~s~s~d~~v~i 467 (514)
||+++++.+ ..+..|.. .+..+.+.+. ..+|+++|.||.|++
T Consensus 278 wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~v 322 (325)
T d1pgua1 278 WDVTTSKCV-QKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 322 (325)
T ss_dssp EETTTTEEE-EEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEE
T ss_pred EECCCCCEE-EEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEE
Confidence 999987543 45554443 3445555433 357899999999998
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=4.4e-30 Score=230.12 Aligned_cols=262 Identities=15% Similarity=0.160 Sum_probs=189.1
Q ss_pred ccccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccc
Q 010256 31 EVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLE 110 (514)
Q Consensus 31 ~~~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 110 (514)
..+|.++|++++|+| |+||+.||+|++||+.++ ..+|.
T Consensus 9 l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~----------------------------~~~h~---------- 46 (287)
T d1pgua2 9 ISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM----------------------------HQDHS---------- 46 (287)
T ss_dssp ECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE----------------------------ECCCC----------
T ss_pred ECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC----------------------------CCCCC----------
Confidence 347888888888876 788888888888886422 24565
Q ss_pred cccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 111 IEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 111 ~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
..|.++.+. + +..+++++.|+++++|++...+
T Consensus 47 --~~V~~~~~~--~-~~~~~s~s~D~~v~~w~~~~~~------------------------------------------- 78 (287)
T d1pgua2 47 --NLIVSLDNS--K-AQEYSSISWDDTLKVNGITKHE------------------------------------------- 78 (287)
T ss_dssp --SCEEEEECC--S-TTCCEEEETTTEEEETTEEEEE-------------------------------------------
T ss_pred --CCEEEEEec--C-CCeEEEEeeccccccccccccc-------------------------------------------
Confidence 668888873 2 2457788888888888764321
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~ 270 (514)
....+..+++++++..++++.++.+.+|+..+.+....+
T Consensus 79 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (287)
T d1pgua2 79 -----------------------------------------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSV 117 (287)
T ss_dssp -----------------------------------------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred -----------------------------------------cccceeeeeeccCCceEEEeecccceeeeccceeeeeec
Confidence 112355678888888888887778899998865543221
Q ss_pred eccCCCcccccCCceEEEEEecCCCcEEEEEecC-CeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEE
Q 010256 271 VDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK-GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKF 349 (514)
Q Consensus 271 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d-g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (514)
. .... ..+++|++ ..+++++.+ +.+++|++....... .+ ...|...+++++|
T Consensus 118 --------~-~~~~--~~~~~~~~-~~~~v~~~~~~~v~~~~~~~~~~~~----~~-----------~~~~~~~v~~~~~ 170 (287)
T d1pgua2 118 --------R-LNSP--GSAVSLSQ-NYVAVGLEEGNTIQVFKLSDLEVSF----DL-----------KTPLRAKPSYISI 170 (287)
T ss_dssp --------E-CSSC--EEEEEECS-SEEEEEETTTSCEEEEETTEEEEEE----EC-----------SSCCSSCEEEEEE
T ss_pred --------c-ccce--eeeeeccC-cceeeeccccceeeeeeccccceee----ee-----------eeccCCceeEEEe
Confidence 1 2222 34567777 567767665 579999987654321 11 1224468999999
Q ss_pred ecCCCEEEEEeC-CeEEEEEccCCCCce-eeeeeccccccccccccccCCccceeeEEEcC----------CCCEEEEEe
Q 010256 350 ARNGRHILSRDY-MTLKLWDINMDSGPV-ATFQVHEHLRPKLCDLYENDSIFDKFECCLSG----------DGGRVATGS 417 (514)
Q Consensus 350 s~~g~~l~~~~~-~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~----------~~~~l~s~~ 417 (514)
+|++.+|++|+. +.|++||+.. +... ..+..|... |.+++|+| ++.+|++|+
T Consensus 171 s~~~~~l~~g~~dg~i~i~d~~~-~~~~~~~~~~h~~~---------------v~~~~~~p~~~~~~~~~~~~~~l~sgs 234 (287)
T d1pgua2 171 SPSETYIAAGDVMGKILLYDLQS-REVKTSRWAFRTSK---------------INAISWKPAEKGANEEEIEEDLVATGS 234 (287)
T ss_dssp CTTSSEEEEEETTSCEEEEETTT-TEEEECCSCCCSSC---------------EEEEEECCCC------CCSCCEEEEEE
T ss_pred ccCccccccccccccccceeecc-cccccccccccccc---------------cceeeecccccccccccCCCCeeEeec
Confidence 999999999865 9999999986 4433 334555543 33777765 457899999
Q ss_pred CCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 418 YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 418 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.|+.|+|||++........+.+|...|.++.|+|++ .|++++.|+.|++
T Consensus 235 ~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~i 283 (287)
T d1pgua2 235 LDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKR 283 (287)
T ss_dssp TTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEE
T ss_pred CCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEE
Confidence 999999999987666667888999999999999986 5888999999998
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=5.1e-29 Score=223.12 Aligned_cols=268 Identities=9% Similarity=0.070 Sum_probs=199.2
Q ss_pred eeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecc
Q 010256 91 RYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGS 170 (514)
Q Consensus 91 ~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (514)
+++++++||. .+|++++|+| |++|+.||+|++||+.++.
T Consensus 4 ~~i~~l~gH~------------~~I~~l~~s~------l~sgs~Dg~v~~Wd~~~~~----------------------- 42 (287)
T d1pgua2 4 EVLKTISGHN------------KGITALTVNP------LISGSYDGRIMEWSSSSMH----------------------- 42 (287)
T ss_dssp EEEEEECCCS------------SCEEEEETTT------TEEEETTSCEEETTTTEEE-----------------------
T ss_pred ceeEEECCCC------------CceEEEEECc------EEEEeCCCeEEEEECCCCC-----------------------
Confidence 4677899999 9999999942 8999999999999976532
Q ss_pred cccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEE
Q 010256 171 HVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 250 (514)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 250 (514)
.+|...|.++++++++. +++
T Consensus 43 -----------------------------------------------------------~~h~~~V~~~~~~~~~~-~~s 62 (287)
T d1pgua2 43 -----------------------------------------------------------QDHSNLIVSLDNSKAQE-YSS 62 (287)
T ss_dssp -----------------------------------------------------------CCCCSCEEEEECCSTTC-CEE
T ss_pred -----------------------------------------------------------CCCCCCEEEEEecCCCe-EEE
Confidence 45778899999987765 556
Q ss_pred e-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccC
Q 010256 251 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 329 (514)
Q Consensus 251 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 329 (514)
+ .|+++++|++...+ ....+..+.+++++ ..++ .+.++.+.+|+..++... ..+..
T Consensus 63 ~s~D~~v~~w~~~~~~---------------~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~----~~~~~-- 119 (287)
T d1pgua2 63 ISWDDTLKVNGITKHE---------------FGSQPKVASANNDG-FTAV-LTNDDDLLILQSFTGDII----KSVRL-- 119 (287)
T ss_dssp EETTTEEEETTEEEEE---------------CSSCEEEEEECSSS-EEEE-EETTSEEEEEETTTCCEE----EEEEC--
T ss_pred Eeeccccccccccccc---------------cccceeeeeeccCC-ceEE-Eeecccceeeeccceeee----eeccc--
Confidence 5 89999999986321 24457788899887 5555 456677889998887652 22221
Q ss_pred CCCccceeeccccceeEEEEecCCCEEEEEe-C-CeEEEEEccCCCCceeeeee-ccccccccccccccCCccceeeEEE
Q 010256 330 APGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQV-HEHLRPKLCDLYENDSIFDKFECCL 406 (514)
Q Consensus 330 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~-~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~ 406 (514)
.....++++++..++++. + +.+++|++.. .+....+.. +.. .+++++|
T Consensus 120 -------------~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~-~~~~~~~~~~~~~---------------~v~~~~~ 170 (287)
T d1pgua2 120 -------------NSPGSAVSLSQNYVAVGLEEGNTIQVFKLSD-LEVSFDLKTPLRA---------------KPSYISI 170 (287)
T ss_dssp -------------SSCEEEEEECSSEEEEEETTTSCEEEEETTE-EEEEEECSSCCSS---------------CEEEEEE
T ss_pred -------------cceeeeeeccCcceeeeccccceeeeeeccc-cceeeeeeeccCC---------------ceeEEEe
Confidence 123356778888887764 4 6899999874 332222221 211 1458999
Q ss_pred cCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCC----------CCceeecCCCCeEEEeeCCCCCcc
Q 010256 407 SGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS----------RPSRPLGSLSGVVRRVKGADNSAL 476 (514)
Q Consensus 407 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~----------~~~l~s~s~d~~v~i~~~~~~~~~ 476 (514)
+|++.+|++|+.||.|++||+.++......+.+|..+|.+++|+|. +.++++|+.|++|++++-.+..
T Consensus 171 s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~-- 248 (287)
T d1pgua2 171 SPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM-- 248 (287)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT--
T ss_pred ccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCC--
Confidence 9999999999999999999999886655667899999999999875 4689999999999994432222
Q ss_pred ccCCcccccccceEEEEEcCCCCEEEEEecCcEEEEe
Q 010256 477 DANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 477 ~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~i~~ 513 (514)
........|...|++++|+|++.++.++.++.+++|.
T Consensus 249 ~~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~ 285 (287)
T d1pgua2 249 KIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWN 285 (287)
T ss_dssp CCEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred eEEEEeCCCCCCeEEEEECCCCEEEEEECCCeEEEEE
Confidence 1222233689999999999998766666788999996
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.5e-27 Score=218.57 Aligned_cols=305 Identities=9% Similarity=0.014 Sum_probs=197.2
Q ss_pred eeeeccCCCccccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEE-EeeccCCCccccCCcceeccc
Q 010256 93 KTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKK-VFDWNVHPEKAAGNGPIFGSH 171 (514)
Q Consensus 93 ~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~ 171 (514)
+...++|+ +.|++|+|+| ++++|++++.||+|+|||+..+.... ......+ .+.|.
T Consensus 4 v~~~~~h~------------d~I~~l~fsp--~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h------~~~V~--- 60 (342)
T d1yfqa_ 4 VQIEQAPK------------DYISDIKIIP--SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRY------KHPLL--- 60 (342)
T ss_dssp EECSSCCS------------SCEEEEEEEG--GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEEC------SSCEE---
T ss_pred EEcCCCCC------------CCEEEEEEeC--CCCEEEEEECCCeEEEEEccCCCcceEEEEecCC------CCCEE---
Confidence 34567787 8999999964 67799999999999999987543211 1111001 24455
Q ss_pred ccCCceeeccCCC-ccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEE
Q 010256 172 VSAIPKSYMANGG-CGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFIS 250 (514)
Q Consensus 172 ~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 250 (514)
+++|+|++. .+ ++++.|+.+++|+ ...... .......+........+.++...+++
T Consensus 61 ----~v~f~~~~~~~l------------~sg~~d~~v~~w~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (342)
T d1yfqa_ 61 ----CCNFIDNTDLQI------------YVGTVQGEILKVD-LIGSPS------FQALTNNEANLGICRICKYGDDKLIA 117 (342)
T ss_dssp ----EEEEEESSSEEE------------EEEETTSCEEEEC-SSSSSS------EEECBSCCCCSCEEEEEEETTTEEEE
T ss_pred ----EEEEeCCCCCEE------------EEcccccceeeee-cccccc------cccccccccccccccccccccccccc
Confidence 789998754 55 8899999999999 332221 11111233344455666777888888
Q ss_pred e-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccC
Q 010256 251 A-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQE 329 (514)
Q Consensus 251 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 329 (514)
+ .++++++||++............ .............+.+.+ ..+++++.|+.|++||++....... ...
T Consensus 118 ~~~~~~~~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~----~~~-- 188 (342)
T d1yfqa_ 118 ASWDGLIEVIDPRNYGDGVIAVKNL--NSNNTKVKNKIFTMDTNS-SRLIVGMNNSQVQWFRLPLCEDDNG----TIE-- 188 (342)
T ss_dssp EETTSEEEEECHHHHTTBCEEEEES--CSSSSSSCCCEEEEEECS-SEEEEEESTTEEEEEESSCCTTCCC----EEE--
T ss_pred cccccccceeeccccccceeeeccc--ccccccceeeeeeeeccC-CceeeecCCCcEEEEecccCcccce----eee--
Confidence 8 99999999987554332221111 111122334556677777 7899999999999999987664321 111
Q ss_pred CCCccceeeccccceeEEEEe-cCCCEEEEEe-CCeEEEEEccCCCCce-----eeeeeccccccccccccccCCcccee
Q 010256 330 APGTRSFFTEIIASISDIKFA-RNGRHILSRD-YMTLKLWDINMDSGPV-----ATFQVHEHLRPKLCDLYENDSIFDKF 402 (514)
Q Consensus 330 ~~~~~~~~~~~~~~i~~~~~s-~~g~~l~~~~-~~~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~ 402 (514)
...+...+.+..+. .++..+++++ +|.+.+|+........ ..+..+.. ..........+.
T Consensus 189 -------~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~v~ 255 (342)
T d1yfqa_ 189 -------ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL------NLKDTNLAYPVN 255 (342)
T ss_dssp -------ECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCC------CTTCCSSCCCEE
T ss_pred -------ecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeee------ccCCCcccccce
Confidence 11122345555554 4667777765 5999999987522111 11111111 011123344567
Q ss_pred eEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 403 ECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 403 ~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
+++|+|++++|++|+.||.|++||+.+++.+ ..+..+ .....++++|+++++++++.|+++++
T Consensus 256 ~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l-~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~~~ 318 (342)
T d1yfqa_ 256 SIEFSPRHKFLYTAGSDGIISCWNLQTRKKI-KNFAKF-NEDSVVKIACSDNILCLATSDDTFKT 318 (342)
T ss_dssp EEEECTTTCCEEEEETTSCEEEEETTTTEEE-EECCCC-SSSEEEEEEECSSEEEEEEECTHHHH
T ss_pred eEEecCCccEEEEECCCCEEEEEECCCCcEE-EEecCC-CCCEEEEEEeCCCEEEEEEcCCcEEE
Confidence 9999999999999999999999999987544 444432 23446778889999999999988776
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.1e-27 Score=224.49 Aligned_cols=208 Identities=12% Similarity=0.056 Sum_probs=141.7
Q ss_pred CCEEEEe-cCCeEEEEeccCCCceeeeec--cCCCcccccCCceEEEEEecCC----CcEEEEEecCCeEEEEEcCCCcc
Q 010256 245 GETFISA-DDLRINLWNLEISNQSFNIVD--VKPANMEDLTEVITSAEFHPTH----CNMLAYSSSKGSIRLIDMRQSAL 317 (514)
Q Consensus 245 ~~~l~s~-~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~i~~v~~~p~~----~~~l~~~~~dg~i~~wd~~~~~~ 317 (514)
+.+++++ .||.|++|++........... ........+...+..++|.++. ..++++++.||.+++|++.....
T Consensus 79 ~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~ 158 (393)
T d1sq9a_ 79 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 158 (393)
T ss_dssp EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred CcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCc
Confidence 3456677 899999999875544332211 1111223355667888888764 16889999999999999865332
Q ss_pred ccccc-----cceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-CCeEEEEEccCCCCceeeeeecccccccccc
Q 010256 318 CDTHS-----KLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCD 391 (514)
Q Consensus 318 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 391 (514)
..... ...... ........+...+.+++|+|++ +|++|+ |++|+|||+.+ ++++..+........
T Consensus 159 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~-~~~~~~~~~~~~l~~---- 229 (393)
T d1sq9a_ 159 ESNSLTLNWSPTLELQ---GTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELST-LRPLYNFESQHSMIN---- 229 (393)
T ss_dssp HHHHTTTCCCCEEEEE---EEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT-TEEEEEEECCC---C----
T ss_pred ccceeeeeeccceecc---cceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecc-ccccccccccccccc----
Confidence 11000 000000 0011122344568999999998 778875 59999999997 776665543322110
Q ss_pred ccccCCccceeeEEEcCCCCEEEEEeCCCc---EEEEecCCCceeeeee-------------cCCCcceeEEEECCCCCc
Q 010256 392 LYENDSIFDKFECCLSGDGGRVATGSYSNL---FRVFGCSEGSAESTTL-------------EASKNPMRRQVQTPSRPS 455 (514)
Q Consensus 392 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~---i~iwd~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~ 455 (514)
.-..|.+++|+|||++|++|+.|+. |++||+++++.. ..+ .+|...|++++|+|++++
T Consensus 230 -----h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~-~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~ 303 (393)
T d1sq9a_ 230 -----NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERI-GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGET 303 (393)
T ss_dssp -----CCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEE-EEECBC--------CCBSBSSCEEEEEECSSSSE
T ss_pred -----ccceEEEcccccccceeeeecCCCCcceeeecccccceee-eeeccccccccceeeeecccCceeeeccCCCCCe
Confidence 1112559999999999999999874 899999987543 333 489999999999999999
Q ss_pred eeecCCCCeEEE
Q 010256 456 RPLGSLSGVVRR 467 (514)
Q Consensus 456 l~s~s~d~~v~i 467 (514)
|+|+|.|++|++
T Consensus 304 l~S~s~D~~v~v 315 (393)
T d1sq9a_ 304 LCSAGWDGKLRF 315 (393)
T ss_dssp EEEEETTSEEEE
T ss_pred eEEECCCCEEEE
Confidence 999999999999
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.1e-25 Score=201.34 Aligned_cols=269 Identities=17% Similarity=0.276 Sum_probs=192.5
Q ss_pred cceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCC
Q 010256 113 EKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGC 192 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (514)
..|+|+.| ++++|++|+.||+|+|||+.++++...
T Consensus 16 ~~V~c~~~----d~~~l~sgs~Dg~i~vWd~~~~~~~~~----------------------------------------- 50 (293)
T d1p22a2 16 KGVYCLQY----DDQKIVSGLRDNTIKIWDKNTLECKRI----------------------------------------- 50 (293)
T ss_dssp CCEEEEEC----CSSEEEEEESSSCEEEEESSSCCEEEE-----------------------------------------
T ss_pred CCEEEEEE----cCCEEEEEeCCCeEEEEECCCCcEEEE-----------------------------------------
Confidence 77998776 467999999999999999987754322
Q ss_pred CCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeee
Q 010256 193 ASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIV 271 (514)
Q Consensus 193 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 271 (514)
+.+|...|.+++| ++++|++| .|+.|++|++..+......
T Consensus 51 ------------------------------------l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~- 91 (293)
T d1p22a2 51 ------------------------------------LTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTL- 91 (293)
T ss_dssp ------------------------------------ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEE-
T ss_pred ------------------------------------EecCCCCEeeeec--ccceeecccccccccccccccccccccc-
Confidence 2578889998887 57899999 9999999999866554322
Q ss_pred ccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 272 DVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 272 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
..... ....+.+.. ..++++..++.+++||+........ ...+..|...+..+.+.+
T Consensus 92 -------~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~v~~~~~~~ 148 (293)
T d1p22a2 92 -------IHHCE--AVLHLRFNN-GMMVTCSKDRSIAVWDMASPTDITL-------------RRVLVGHRAAVNVVDFDD 148 (293)
T ss_dssp -------CCCCS--CEEEEECCT-TEEEEEETTSCEEEEECSSSSCCEE-------------EEEECCCSSCEEEEEEET
T ss_pred -------ccccc--ccccccccc-cceeecccccceeEeeccccccccc-------------cccccccccccccceecc
Confidence 11122 233344555 6889999999999999987653211 112344556787777764
Q ss_pred CCCEEEEE-eCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 352 NGRHILSR-DYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 352 ~g~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
..++++ .|+.|++||+++ .+.+..+.++... ...+++++.++++++.||.|++||+.+.
T Consensus 149 --~~~~~~s~d~~i~~~d~~~-~~~~~~~~~~~~~-----------------v~~~~~~~~~l~~~~~dg~i~i~d~~~~ 208 (293)
T d1p22a2 149 --KYIVSASGDRTIKVWNTST-CEFVRTLNGHKRG-----------------IACLQYRDRLVVSGSSDNTIRLWDIECG 208 (293)
T ss_dssp --TEEEEEETTSEEEEEETTT-CCEEEEEECCSSC-----------------EEEEEEETTEEEEEETTSCEEEEETTTC
T ss_pred --cccccccCCCceeeecCCC-CcEEEEEcccccc-----------------cccccCCCCeEEEecCCCEEEEEecccc
Confidence 455664 569999999997 8888888776543 2334446789999999999999999987
Q ss_pred ceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeC---CCC---CccccCCcccccccceEEEEEcCCCCEEEEE
Q 010256 431 SAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKG---ADN---SALDANGNAFDFSMKLLHLAWHPSENSIACA 504 (514)
Q Consensus 431 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~---~~~---~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~ 504 (514)
.. .....+|...+.. +++++.+|++++.||.|++.+- ..+ ...........|.+.|++++|+ +++|+++
T Consensus 209 ~~-~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~ 283 (293)
T d1p22a2 209 AC-LRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSS 283 (293)
T ss_dssp CE-EEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEEC
T ss_pred ee-eeeecccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEE
Confidence 44 4677788877764 5667889999999999999321 111 1011112234689999999994 6788888
Q ss_pred e-cCcEEEEe
Q 010256 505 A-SNSLYMYY 513 (514)
Q Consensus 505 ~-~~~~~i~~ 513 (514)
+ ++.++||.
T Consensus 284 s~Dg~i~iWD 293 (293)
T d1p22a2 284 SHDDTILIWD 293 (293)
T ss_dssp CSSSEEEEEC
T ss_pred ecCCEEEEeC
Confidence 7 55688884
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.95 E-value=6.6e-27 Score=216.36 Aligned_cols=306 Identities=12% Similarity=0.111 Sum_probs=213.7
Q ss_pred EEEEcC-CCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEE
Q 010256 40 AIEFDK-SGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKI 118 (514)
Q Consensus 40 ~~~~s~-~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i 118 (514)
+-.||| ||+++|+++ +|.|++|++.+++.. . .+|. ..|.++
T Consensus 7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~------------------------~-~~~~------------~~v~~~ 48 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL------------------------K-VPEP------------LRIRYV 48 (360)
T ss_dssp EEEEEECGGGCEEEEE-TTEEEEECTTSSBEE------------------------E-CSCC------------SCEEEE
T ss_pred cccccCCCCCEEEEEE-CCeEEEEECCCCcEE------------------------E-ccCC------------CCEEEE
Confidence 467999 999999986 579999998766532 1 2466 789999
Q ss_pred EEeeCCCCcEEEEeeCC--CeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCC
Q 010256 119 RWCQSANSALYLLSTND--KTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND 196 (514)
Q Consensus 119 ~~~~~~~~~~l~s~~~d--~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 196 (514)
+| ++||++|++++.+ ..|++||+.+++...
T Consensus 49 ~~--spDg~~l~~~~~~~g~~v~v~d~~~~~~~~---------------------------------------------- 80 (360)
T d1k32a3 49 RR--GGDTKVAFIHGTREGDFLGIYDYRTGKAEK---------------------------------------------- 80 (360)
T ss_dssp EE--CSSSEEEEEEEETTEEEEEEEETTTCCEEE----------------------------------------------
T ss_pred EE--CCCCCEEEEEEcCCCCEEEEEECCCCcEEE----------------------------------------------
Confidence 99 6788888877654 379999998775322
Q ss_pred cccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCC
Q 010256 197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP 275 (514)
Q Consensus 197 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~ 275 (514)
+..|...|.+++|+|++++|+++ .++.+++|++.+.+...
T Consensus 81 --------------------------------~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~------- 121 (360)
T d1k32a3 81 --------------------------------FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV------- 121 (360)
T ss_dssp --------------------------------CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE-------
T ss_pred --------------------------------eeCCCceEEeeeecccccccceeccccccccccccccceee-------
Confidence 14566889999999999999999 99999999998665432
Q ss_pred CcccccCCceEEEEEecCCCcEEEEEe----------cCCeEEEEEcCCCccccccccceeccCCCCccceeecccccee
Q 010256 276 ANMEDLTEVITSAEFHPTHCNMLAYSS----------SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASIS 345 (514)
Q Consensus 276 ~~~~~~~~~i~~v~~~p~~~~~l~~~~----------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 345 (514)
.+..+...+.+++|+|+| ++|+.+. .++.+++||+.+++... +..+...+.
T Consensus 122 -~~~~~~~~~~~~~~spdg-~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-----------------~~~~~~~~~ 182 (360)
T d1k32a3 122 -IERSREAMITDFTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-----------------ATTENSHDY 182 (360)
T ss_dssp -EEECSSSCCCCEEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-----------------CSCSSSBEE
T ss_pred -eeecccccccchhhccce-eeeeeeccccccceeeccccceeeeccccCceee-----------------ecccccccc
Confidence 245577788999999999 7777544 34568999998875421 122335688
Q ss_pred EEEEecCCCEEEEEeC-CeEEEEEccCCCCce-------eeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe
Q 010256 346 DIKFARNGRHILSRDY-MTLKLWDINMDSGPV-------ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 417 (514)
Q Consensus 346 ~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 417 (514)
.++|+|+|++|++++. +.+.+||... .... ..+..+... +..+.|++++..++++.
T Consensus 183 ~~~~spdg~~l~~~s~~~~~~~~d~~~-~~~~~~~~~~~~~~~~~~~~---------------~~~~~~s~~~~~~~~~~ 246 (360)
T d1k32a3 183 APAFDADSKNLYYLSYRSLDPSPDRVV-LNFSFEVVSKPFVIPLIPGS---------------PNPTKLVPRSMTSEAGE 246 (360)
T ss_dssp EEEECTTSCEEEEEESCCCCCEECSSS-SCEECCSCBEEEEEESSTTC---------------CCGGGCCCGGGSCCCCC
T ss_pred cccccCCCCEEEEEeCCCceEcccccc-cceeeccccceEEEecccCc---------------cccceECCCcCcccccc
Confidence 8999999999998765 8999999764 2211 111112111 11456778887776655
Q ss_pred CCC-----cEEEEecCCCceeeeeecCCCcceeEEEECCC---CCceeecCCCCeEEEeeCCCCCccccCCcccccccce
Q 010256 418 YSN-----LFRVFGCSEGSAESTTLEASKNPMRRQVQTPS---RPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKL 489 (514)
Q Consensus 418 ~dg-----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v 489 (514)
.+. .+..+++..+ ....+..+...+..+.+.+. ..++++++.++.+++.+.... ....+.+.|
T Consensus 247 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-------~~~~~~~~v 317 (360)
T d1k32a3 247 YDLNDMYKRSSPINVDPG--DYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR-------KVTEVKNNL 317 (360)
T ss_dssp CCCTTGGGGCEECSCCCB--CEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTC-------CEEEEEEEE
T ss_pred eeecccccceeecccCcC--ceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCC-------eEEEecCCc
Confidence 432 2444444433 22344555555555555444 457899999999999432211 122356789
Q ss_pred EEEEEcCCCCEEEEEe-cCcEEEEeC
Q 010256 490 LHLAWHPSENSIACAA-SNSLYMYYA 514 (514)
Q Consensus 490 ~~~~~spd~~~l~~~~-~~~~~i~~~ 514 (514)
.+++|||||++|++++ ++.+++|.+
T Consensus 318 ~~~~~SpDG~~l~~~~~Dg~i~v~d~ 343 (360)
T d1k32a3 318 TDLRLSADRKTVMVRKDDGKIYTFPL 343 (360)
T ss_dssp EEEEECTTSCEEEEEETTSCEEEEES
T ss_pred CEEEECCCCCEEEEEECCCeEEEEEC
Confidence 9999999999999888 566888863
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.95 E-value=3.4e-26 Score=216.39 Aligned_cols=333 Identities=10% Similarity=0.036 Sum_probs=212.7
Q ss_pred EEcCCCC--eEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEE
Q 010256 42 EFDKSGD--HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (514)
Q Consensus 42 ~~s~~g~--~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~ 119 (514)
.++.|.+ ++++.+.||+|+|||+.+++ .+..+..| ..+..++
T Consensus 25 ~~~~d~~~~~~V~~~~dg~v~vwD~~t~~-----------------------~~~~l~~g-------------~~~~~va 68 (426)
T d1hzua2 25 LNDLDLPNLFSVTLRDAGQIALVDGDSKK-----------------------IVKVIDTG-------------YAVHISR 68 (426)
T ss_dssp CSCCCGGGEEEEEETTTTEEEEEETTTCS-----------------------EEEEEECC-------------SSEEEEE
T ss_pred cccCCCCeEEEEEEcCCCEEEEEECCCCc-----------------------EEEEEeCC-------------CCeeEEE
Confidence 3555543 56778899999999998877 34566665 4489999
Q ss_pred EeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCccc
Q 010256 120 WCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSF 199 (514)
Q Consensus 120 ~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 199 (514)
| ++||+++++++.|++|++||+.+++.........
T Consensus 69 f--SPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~------------------------------------------- 103 (426)
T d1hzua2 69 M--SASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI------------------------------------------- 103 (426)
T ss_dssp E--CTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-------------------------------------------
T ss_pred E--CCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeC-------------------------------------------
Confidence 9 6799999999999999999999876433322210
Q ss_pred CCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCC--
Q 010256 200 PPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKP-- 275 (514)
Q Consensus 200 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~-- 275 (514)
..+|...+.+++|+|||++++++ .++.+++||..+....... ....
T Consensus 104 -----------------------------~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~-~~~~~~ 153 (426)
T d1hzua2 104 -----------------------------GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIV-STRGMT 153 (426)
T ss_dssp -----------------------------CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEE-ECCEEC
T ss_pred -----------------------------CCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEe-eccCCC
Confidence 13455666778899999987665 7999999999866543321 1100
Q ss_pred --CcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCC
Q 010256 276 --ANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (514)
Q Consensus 276 --~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 353 (514)
.....+......+.+++++..++.+....+.+.+++....... ......+...+..+.|+|++
T Consensus 154 ~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~g 218 (426)
T d1hzua2 154 VDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNL---------------TVTSIGAAPFLADGGWDSSH 218 (426)
T ss_dssp SSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSC---------------EEEEEECCSSEEEEEECTTS
T ss_pred ccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccce---------------eeEEeccCCccEeeeECCCC
Confidence 0011233444566666666333333333455555555443321 01122344678899999999
Q ss_pred CEEEEEe-C-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCC-EE--EEEeCCCcEEEEecC
Q 010256 354 RHILSRD-Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RV--ATGSYSNLFRVFGCS 428 (514)
Q Consensus 354 ~~l~~~~-~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l--~s~~~dg~i~iwd~~ 428 (514)
++++++. + ..+.+++... ++.+............. ...+...+. .+ ++.+.|+.+.+|+..
T Consensus 219 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~d~~v~~~~~~ 284 (426)
T d1hzua2 219 RYFMTAANNSNKVAVIDSKD-RRLSALVDVGKTPHPGR-------------GANFVHPKYGPVWSTSHLGDGSISLIGTD 284 (426)
T ss_dssp CEEEEEETTCSEEEEEETTT-TEEEEEEECSSCCCCSC-------------CEEEEETTTEEEEEEECTTTCEEEEEECC
T ss_pred cEEEeeeecccceeeeeccc-ccEEEEeccCCcccccc-------------eeeeecCCCCceEEeccCCCceEEEeecc
Confidence 9998864 3 8899999987 66666655443221100 233333322 22 233457777777765
Q ss_pred CCc------eeeeeecCCCcceeEEEECCCCCcee-------ecCCCCeEEEeeCCCCCcc-ccC-----Ccccccccce
Q 010256 429 EGS------AESTTLEASKNPMRRQVQTPSRPSRP-------LGSLSGVVRRVKGADNSAL-DAN-----GNAFDFSMKL 489 (514)
Q Consensus 429 ~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~-------s~s~d~~v~i~~~~~~~~~-~~~-----~~~~~~~~~v 489 (514)
... ....++++|...+..++++|++++|+ +++.|++|++.+-...... ++. ....++...|
T Consensus 285 ~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv 364 (426)
T d1hzua2 285 PKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRV 364 (426)
T ss_dssp TTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCE
T ss_pred ccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccE
Confidence 431 33478899999999999999999999 5677899999443222110 110 0122456789
Q ss_pred EEEEEcCCCCEEEEEe------cCcEEEEeC
Q 010256 490 LHLAWHPSENSIACAA------SNSLYMYYA 514 (514)
Q Consensus 490 ~~~~~spd~~~l~~~~------~~~~~i~~~ 514 (514)
.+++|||||++|+++. ++.+.||.+
T Consensus 365 ~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~ 395 (426)
T d1hzua2 365 VQPEYNKRGDEVWFSVWNGKNDSSALVVVDD 395 (426)
T ss_dssp EEEEECSSSSEEEEEECCCTTSCCEEEEEET
T ss_pred EEEEECCCCCEEEEEEecCCCCCCeEEEEEC
Confidence 9999999999886432 445888864
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.94 E-value=1.7e-25 Score=210.83 Aligned_cols=358 Identities=9% Similarity=0.019 Sum_probs=233.1
Q ss_pred cCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEEEeeC
Q 010256 44 DKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQS 123 (514)
Q Consensus 44 s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~ 123 (514)
+++.-++++.+.+|+|.|||..+++. +..+..| ..+..++| +
T Consensus 29 ~~~~~~~v~~~d~g~v~v~D~~t~~v-----------------------~~~~~~g-------------~~~~~v~f--S 70 (432)
T d1qksa2 29 DLENLFSVTLRDAGQIALIDGSTYEI-----------------------KTVLDTG-------------YAVHISRL--S 70 (432)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCE-----------------------EEEEECS-------------SCEEEEEE--C
T ss_pred CCCcEEEEEEcCCCEEEEEECCCCcE-----------------------EEEEeCC-------------CCeeEEEE--C
Confidence 33444468889999999999988774 4555554 34899999 7
Q ss_pred CCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCC
Q 010256 124 ANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGG 203 (514)
Q Consensus 124 ~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 203 (514)
+||+++++++.|++|++||+.+++........... ...+.+. +..|+|||+.+ ++++..
T Consensus 71 pDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~---~~~~~~~-------s~~~SpDG~~l-----------~vs~~~ 129 (432)
T d1qksa2 71 ASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS---EARSIET-------SKMEGWEDKYA-----------IAGAYW 129 (432)
T ss_dssp TTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS---EEEEEEE-------CCSTTCTTTEE-----------EEEEEE
T ss_pred CCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCC---CCCCeEE-------ecccCCCCCEE-----------EEEcCC
Confidence 79999999999999999999887543332221100 0012222 56789999975 256778
Q ss_pred CCcEEeceeeccccccccccc----cccccccCccCeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCc
Q 010256 204 VSSLRLPVVVTSQETNLVAGC----RRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPAN 277 (514)
Q Consensus 204 ~~~i~i~~~~~~~~~~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~ 277 (514)
++.+++|| ....+....... .......+......+.++|++..++.+ .++.|.+||..+.+... +. .
T Consensus 130 ~~~v~i~d-~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~-~~-----~ 202 (432)
T d1qksa2 130 PPQYVIMD-GETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK-TT-----E 202 (432)
T ss_dssp TTEEEEEE-TTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE-EE-----E
T ss_pred CCeEEEEe-CccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcce-EE-----E
Confidence 89999999 333322111100 001113456677889999999887665 78999999988654321 11 1
Q ss_pred ccccCCceEEEEEecCCCcEEEEEe-cCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEE
Q 010256 278 MEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHI 356 (514)
Q Consensus 278 ~~~~~~~i~~v~~~p~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 356 (514)
-.+...+..++|+|+| +++++++ .++.+.++|..+++.. ..+.... ...|........+...+...
T Consensus 203 -i~~g~~~~~~~~spdg-~~~~va~~~~~~v~v~d~~~~~~~----~~~~~g~-------~~~~~~~~~~~~~~~~g~~~ 269 (432)
T d1qksa2 203 -ISAERFLHDGGLDGSH-RYFITAANARNKLVVIDTKEGKLV----AIEDTGG-------QTPHPGRGANFVHPTFGPVW 269 (432)
T ss_dssp -EECCSSEEEEEECTTS-CEEEEEEGGGTEEEEEETTTTEEE----EEEECSS-------SSBCCTTCEEEEETTTEEEE
T ss_pred -EcccCccccceECCCC-CEEEEeccccceEEEeecccceEE----EEeccCc-------cccccCcccceecCCCCcee
Confidence 1245668899999999 6555554 5678999999887653 2222111 01122333444555455555
Q ss_pred EEEe--CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceee
Q 010256 357 LSRD--YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAES 434 (514)
Q Consensus 357 ~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 434 (514)
++.. ++.+.+|+... .. ...+.. .+....++|++..+++++.++..++|...+..
T Consensus 270 ~~~~lg~~~v~~~~~~~-~~----~~~~~~---------------~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~--- 326 (432)
T d1qksa2 270 ATSHMGDDSVALIGTDP-EG----HPDNAW---------------KILDSFPALGGGSLFIKTHPNSQYLYVDATLN--- 326 (432)
T ss_dssp EEEBSSSSEEEEEECCT-TT----CTTTBT---------------SEEEEEECSCSCCCCEECCTTCSEEEEECTTC---
T ss_pred cccccCCceEEeccccc-cc----cccccc---------------EEEEEEEcCCCCeEEEEecCCccceeecccCC---
Confidence 5543 47899998764 21 111211 13378899999999999999999999876442
Q ss_pred eeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEe------cCc
Q 010256 435 TTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA------SNS 508 (514)
Q Consensus 435 ~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~------~~~ 508 (514)
.|.....++++ ||++.+++++.|+++++.+..+.. ...++...|.+++|||||++|+++. ++.
T Consensus 327 ----~~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~------~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~ 395 (432)
T d1qksa2 327 ----PEAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWA------GITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESA 395 (432)
T ss_dssp ----SSHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHH------TCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCE
T ss_pred ----CCCCeeeEEEE-EechhhcccccCCceEeccccccc------ccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCc
Confidence 23333445555 999999999999999993221111 1124677899999999999987653 345
Q ss_pred EEEEeC
Q 010256 509 LYMYYA 514 (514)
Q Consensus 509 ~~i~~~ 514 (514)
+.||.+
T Consensus 396 i~i~D~ 401 (432)
T d1qksa2 396 LVVVDD 401 (432)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 888864
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.93 E-value=2e-25 Score=206.25 Aligned_cols=310 Identities=11% Similarity=0.028 Sum_probs=198.6
Q ss_pred cccccccceEEEEEcCCCCeEEEecCCC--eEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccc
Q 010256 30 EEVQEVDIISAIEFDKSGDHLATGDRGG--RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (514)
Q Consensus 30 ~~~~h~~~V~~~~~s~~g~~l~tg~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (514)
..+.|...|++++|+|||++|++++.+. .|++||+.+++. ..+..|.
T Consensus 37 ~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~------------------------~~~~~~~------- 85 (360)
T d1k32a3 37 LKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA------------------------EKFEENL------- 85 (360)
T ss_dssp EECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE------------------------EECCCCC-------
T ss_pred EEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE------------------------EEeeCCC-------
Confidence 3468999999999999999998776543 799999987653 2455666
Q ss_pred ccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccc
Q 010256 108 SLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (514)
Q Consensus 108 ~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 187 (514)
..|.+++| ++++++|++++.++.+++|++.+++.......+. ..+ ..++|+|||+.+.
T Consensus 86 -----~~v~~~~~--spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-------~~~~~spdg~~la 143 (360)
T d1k32a3 86 -----GNVFAMGV--DRNGKFAVVANDRFEIMTVDLETGKPTVIERSRE--------AMI-------TDFTISDNSRFIA 143 (360)
T ss_dssp -----CSEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS--------SCC-------CCEEECTTSCEEE
T ss_pred -----ceEEeeee--cccccccceeccccccccccccccceeeeeeccc--------ccc-------cchhhccceeeee
Confidence 78999999 6788899999999999999999988776665442 122 2789999999872
Q ss_pred cccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCc
Q 010256 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ 266 (514)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~ 266 (514)
.. .........+..++.+++|+ ....+ ... ...+...+..++|+|+|+.|+++ .++.+++|+......
T Consensus 144 ~~--~~~~~~~~~~~~~~~~~v~d-~~~~~------~~~--~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~ 212 (360)
T d1k32a3 144 YG--FPLKHGETDGYVMQAIHVYD-MEGRK------IFA--ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNF 212 (360)
T ss_dssp EE--EEECSSTTCSCCEEEEEEEE-TTTTE------EEE--CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCE
T ss_pred ee--ccccccceeeccccceeeec-cccCc------eee--ecccccccccccccCCCCEEEEEeCCCceEcccccccce
Confidence 21 11112234567778899988 32221 111 24566778899999999999998 899999999764432
Q ss_pred eeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCe---EEEEEc--CCCccccccccceeccCCCCccceeeccc
Q 010256 267 SFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS---IRLIDM--RQSALCDTHSKLFEEQEAPGTRSFFTEII 341 (514)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~---i~~wd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (514)
.... ..++..+..+...+..+.|+|++ ..++++..+.. .++|.+ ..+. ...+..+.
T Consensus 213 ~~~~-~~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~ 273 (360)
T d1k32a3 213 SFEV-VSKPFVIPLIPGSPNPTKLVPRS-MTSEAGEYDLNDMYKRSSPINVDPGD-----------------YRMIIPLE 273 (360)
T ss_dssp ECCS-CBEEEEEESSTTCCCGGGCCCGG-GSCCCCCCCCTTGGGGCEECSCCCBC-----------------EEEEEECS
T ss_pred eecc-ccceEEEecccCccccceECCCc-CcccccceeecccccceeecccCcCc-----------------eeEeeecC
Confidence 2100 00000112233334444566665 44443332211 112221 1111 11122233
Q ss_pred cceeEEEEecCC---CEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe
Q 010256 342 ASISDIKFARNG---RHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS 417 (514)
Q Consensus 342 ~~i~~~~~s~~g---~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 417 (514)
+.+..+.+.+.+ .+++++++ +.|++||+.. ++ +..+..+ |.+++|+|||++|++++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~-~~~~~~~------------------v~~~~~SpDG~~l~~~~ 333 (360)
T d1k32a3 274 SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT-RK-VTEVKNN------------------LTDLRLSADRKTVMVRK 333 (360)
T ss_dssp SEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTT-CC-EEEEEEE------------------EEEEEECTTSCEEEEEE
T ss_pred CCceEEEEEecCCCeeEEEecCCCCEEEEEECCC-Ce-EEEecCC------------------cCEEEECCCCCEEEEEE
Confidence 344445544433 34555554 8999999986 43 2232222 33899999999999999
Q ss_pred CCCcEEEEecCCCceeeeeecCCCcc
Q 010256 418 YSNLFRVFGCSEGSAESTTLEASKNP 443 (514)
Q Consensus 418 ~dg~i~iwd~~~~~~~~~~~~~~~~~ 443 (514)
.||.|++||+++++.. .++..+..|
T Consensus 334 ~Dg~i~v~d~~~~~~~-~~~~~d~~~ 358 (360)
T d1k32a3 334 DDGKIYTFPLEKPEDE-RTVETDKRP 358 (360)
T ss_dssp TTSCEEEEESSCTTSC-EECCCCSSC
T ss_pred CCCeEEEEECCCCCcc-eEEEecccc
Confidence 9999999999987543 555544444
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.93 E-value=5.4e-24 Score=201.12 Aligned_cols=341 Identities=9% Similarity=-0.028 Sum_probs=202.4
Q ss_pred ccccceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccc
Q 010256 33 QEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (514)
++...+..++|||||++|++++.||.|++||+.+++.. ....+....+|.
T Consensus 59 ~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~------------------~~~~i~~~~~~~------------ 108 (426)
T d1hzua2 59 DTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPT------------------KVAEIKIGIEAR------------ 108 (426)
T ss_dssp ECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCE------------------EEEEEECCSEEE------------
T ss_pred eCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCcee------------------EEEEEeCCCCCc------------
Confidence 34467999999999999999999999999999887632 000011122332
Q ss_pred cceeEEEEeeCCCCcEEEEe-eCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 113 EKINKIRWCQSANSALYLLS-TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~-~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
..+.+++| ++||++++++ ..++.+++||..+++.......+...... ...........+..++++..+
T Consensus 109 ~~~~s~~~--spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~s~d~~~~----- 177 (426)
T d1hzua2 109 SVESSKFK--GYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDT----QTYHPEPRVAAIIASHEHPEF----- 177 (426)
T ss_dssp EEEECCST--TCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSS----CCEESCCCEEEEEECSSSSEE-----
T ss_pred ceEEeeee--cCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccc----eeecCCCceeEEEECCCCCEE-----
Confidence 44556666 6788887654 68999999999999877666544221100 000000011133444444433
Q ss_pred CCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceee
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFN 269 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~ 269 (514)
.......+.+.+++ ..... ........+...+..+.|+|++++++++ .+..+.+++..+.+....
T Consensus 178 ------~~~~~~~~~i~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~ 244 (426)
T d1hzua2 178 ------IVNVKETGKVLLVN-YKDID------NLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSAL 244 (426)
T ss_dssp ------EEEETTTTEEEEEE-CSSSS------SCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEE
T ss_pred ------EEecCCCCeEEEEE-ecccc------ceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEE
Confidence 12222233443333 11111 1111123566788999999999998877 688899999986554432
Q ss_pred eeccCCCcccccCCceEEEEEecCCCcEE--EEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEE
Q 010256 270 IVDVKPANMEDLTEVITSAEFHPTHCNML--AYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (514)
Q Consensus 270 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l--~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 347 (514)
. . ...+........+.+.+...+ +..+.|+.+.+|+........ ..++ ....+.+|...+..+
T Consensus 245 ~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~---~~~~------~~~~l~g~~~~v~~v 309 (426)
T d1hzua2 245 V-D-----VGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ---YAWK------KVAELQGQGGGSLFI 309 (426)
T ss_dssp E-E-----CSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTT---TBTS------EEEEEECSSSCCCCE
T ss_pred e-c-----cCCcccccceeeeecCCCCceEEeccCCCceEEEeecccccccc---ccce------EeEEEecCCCceeEE
Confidence 2 1 111222233344443331222 233458889899876643221 1111 123466777889999
Q ss_pred EEecCCCEEEE-------Ee-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEE-E--
Q 010256 348 KFARNGRHILS-------RD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVAT-G-- 416 (514)
Q Consensus 348 ~~s~~g~~l~~-------~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s-~-- 416 (514)
+|+|++++|++ +. +++|+|||+++ ++...++..+..... ..+....++.++|||||++|+. +
T Consensus 310 ~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t-~~~~~~~~~~~~~~~------~~~~~~rv~~~~fSpDGk~i~vs~~~ 382 (426)
T d1hzua2 310 KTHPKSSHLYVDTTFNPDARISQSVAVFDLKN-LDAKYQVLPIAEWAD------LGEGAKRVVQPEYNKRGDEVWFSVWN 382 (426)
T ss_dssp ECCTTCSEEEECCTTCSSHHHHTCEEEEETTC-TTSCCEEECHHHHHC------CCSSCCCEEEEEECSSSSEEEEEECC
T ss_pred EcCCCCceEEEeecCCCCcccCCEEEEEECCC-CCcCeEEeccchhcc------cCCCCccEEEEEECCCCCEEEEEEec
Confidence 99999999995 22 38999999997 666655543221100 0011123558899999997743 2
Q ss_pred --eCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCce
Q 010256 417 --SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSR 456 (514)
Q Consensus 417 --~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 456 (514)
+.+|.|+|||.++.+ +...+.++. .++|+|+|-
T Consensus 383 ~~~~~~~i~v~D~~T~k-~~~~i~~~~------~~tp~Gk~~ 417 (426)
T d1hzua2 383 GKNDSSALVVVDDKTLK-LKAVVKDPR------LITPTGKFN 417 (426)
T ss_dssp CTTSCCEEEEEETTTTE-EEEEECCTT------CCSEEEEEE
T ss_pred CCCCCCeEEEEECCCCe-EEEEECCCC------ccCCCceEe
Confidence 367899999999884 445666553 445666664
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.91 E-value=2.5e-23 Score=195.97 Aligned_cols=331 Identities=9% Similarity=-0.046 Sum_probs=214.7
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccce
Q 010256 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (514)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (514)
..+..++|||||++|++++.||.|++||+.+++.. ....+....+|. ..+
T Consensus 62 ~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~------------------~~~~i~~~~~~~------------~~~ 111 (432)
T d1qksa2 62 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT------------------TVAEIKIGSEAR------------SIE 111 (432)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC------------------EEEEEECCSEEE------------EEE
T ss_pred CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCce------------------EEEEEecCCCCC------------CeE
Confidence 56999999999999999999999999999876632 000011112222 334
Q ss_pred eEEEEeeCCCCcEE-EEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCC
Q 010256 116 NKIRWCQSANSALY-LLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCAS 194 (514)
Q Consensus 116 ~~i~~~~~~~~~~l-~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (514)
.+..| ++||++| +++..++.|++||..+++.......+...... ...........+.++|+|..+
T Consensus 112 ~s~~~--SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~----~~~~~~~~~~~v~~s~dg~~~-------- 177 (432)
T d1qksa2 112 TSKME--GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDE----QEYHPEPRVAAILASHYRPEF-------- 177 (432)
T ss_dssp ECCST--TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTT----CCEESCCCEEEEEECSSSSEE--------
T ss_pred Eeccc--CCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccc----eeccCCCceeEEEECCCCCEE--------
Confidence 44555 6788876 56788999999999999887766544221100 000011111246677777754
Q ss_pred CCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeec
Q 010256 195 NDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVD 272 (514)
Q Consensus 195 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~ 272 (514)
+++...++.+.+|+ ....+. .......+...+.+++|+|+|++++++ .+..+.++|..+.+.. ..+.
T Consensus 178 ---~vs~~~~~~i~~~d-~~~~~~------~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~-~~~~ 246 (432)
T d1qksa2 178 ---IVNVKETGKILLVD-YTDLNN------LKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV-AIED 246 (432)
T ss_dssp ---EEEETTTTEEEEEE-TTCSSE------EEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEE-EEEE
T ss_pred ---EEEEccCCeEEEEE-ccCCCc------ceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEE-EEec
Confidence 25566778888887 332221 111112344568899999999988776 6889999999855433 2222
Q ss_pred cCCCcccccCCceEEEEEecCCCcEEEEEe-cCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEec
Q 010256 273 VKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFAR 351 (514)
Q Consensus 273 ~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 351 (514)
.. ....+........+...+ ...++.. .++.+.+|+...... ..|...+....++|
T Consensus 247 ~g--~~~~~~~~~~~~~~~~~g-~~~~~~~lg~~~v~~~~~~~~~~--------------------~~~~~~v~~~~~~~ 303 (432)
T d1qksa2 247 TG--GQTPHPGRGANFVHPTFG-PVWATSHMGDDSVALIGTDPEGH--------------------PDNAWKILDSFPAL 303 (432)
T ss_dssp CS--SSSBCCTTCEEEEETTTE-EEEEEEBSSSSEEEEEECCTTTC--------------------TTTBTSEEEEEECS
T ss_pred cC--ccccccCcccceecCCCC-ceecccccCCceEEecccccccc--------------------cccccEEEEEEEcC
Confidence 11 112234444455554444 4444443 378899998755332 22335688899999
Q ss_pred CCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 352 NGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 352 ~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
++..+++++ +...++|+... ..+ |..... ++++ ||++.|++++.|+.+++|++.++
T Consensus 304 ~g~~~~~~s~p~~~~lw~~~~-~~~------~~~~~~---------------sv~v-pDg~~la~~s~d~~~k~w~~~~~ 360 (432)
T d1qksa2 304 GGGSLFIKTHPNSQYLYVDAT-LNP------EAEISG---------------SVAV-FDIKAMTGDGSDPEFKTLPIAEW 360 (432)
T ss_dssp CSCCCCEECCTTCSEEEEECT-TCS------SHHHHT---------------CEEE-EEGGGCCCSSSCCCEEEECHHHH
T ss_pred CCCeEEEEecCCccceeeccc-CCC------CCCeee---------------EEEE-EechhhcccccCCceEecccccc
Confidence 998888875 48899998764 222 221111 4665 89999999999999999998654
Q ss_pred ceeeeeecCCCcceeEEEECCCCCceeecC-----CCCeEEEeeCC
Q 010256 431 SAESTTLEASKNPMRRQVQTPSRPSRPLGS-----LSGVVRRVKGA 471 (514)
Q Consensus 431 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s-----~d~~v~i~~~~ 471 (514)
..+..|...+..++|+|||++++.+. .++.|+|++..
T Consensus 361 ----~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~ 402 (432)
T d1qksa2 361 ----AGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDK 402 (432)
T ss_dssp ----HTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETT
T ss_pred ----cccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECC
Confidence 23346777888999999999885543 46888885544
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.90 E-value=1.1e-20 Score=169.38 Aligned_cols=269 Identities=13% Similarity=0.112 Sum_probs=187.5
Q ss_pred EEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEEEeeCCCCcEEE
Q 010256 51 ATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSALYL 130 (514)
Q Consensus 51 ~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~l~ 130 (514)
++++.|++|.+||+++++. ..++... .....++| +++|++|+
T Consensus 6 V~~~~~~~v~v~D~~t~~~-----------------------~~~i~~g-------------~~p~~va~--spdG~~l~ 47 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKV-----------------------TATIPVG-------------SNPMGAVI--SPDGTKVY 47 (301)
T ss_dssp EEETTTTEEEEEETTTTEE-----------------------EEEEECS-------------SSEEEEEE--CTTSSEEE
T ss_pred EEECCCCEEEEEECCCCeE-----------------------EEEEECC-------------CCceEEEE--eCCCCEEE
Confidence 4567899999999988774 2333322 44788999 67888775
Q ss_pred -EeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEEe
Q 010256 131 -LSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLRL 209 (514)
Q Consensus 131 -s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i 209 (514)
+++.++.|++||+.+++..........+ ..+.+++++..+ ++++..++.+.+
T Consensus 48 v~~~~~~~i~v~d~~t~~~~~~~~~~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~~~~ 100 (301)
T d1l0qa2 48 VANAHSNDVSIIDTATNNVIATVPAGSSP----------------QGVAVSPDGKQV-----------YVTNMASSTLSV 100 (301)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEEECSSSE----------------EEEEECTTSSEE-----------EEEETTTTEEEE
T ss_pred EEECCCCEEEEEECCCCceeeeeeccccc----------------cccccccccccc-----------cccccccceeee
Confidence 5678899999999999877766544221 177889998865 245566778888
Q ss_pred ceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCceEE
Q 010256 210 PVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITS 287 (514)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 287 (514)
|+ ....+ .... ..+.....+++|+|++..++.+ .++.+.+|+..+......+ .+...+..
T Consensus 101 ~~-~~~~~------~~~~--~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ 162 (301)
T d1l0qa2 101 ID-TTSNT------VAGT--VKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV---------SVGRSPKG 162 (301)
T ss_dssp EE-TTTTE------EEEE--EECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE---------ECCSSEEE
T ss_pred cc-cccce------eeee--ccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeec---------ccCCCceE
Confidence 88 32211 1111 2344567889999999987655 6899999999866544321 23455789
Q ss_pred EEEecCCCcEEEEEec-CCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE-e--C-C
Q 010256 288 AEFHPTHCNMLAYSSS-KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-D--Y-M 362 (514)
Q Consensus 288 v~~~p~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~--~-~ 362 (514)
+.++|++ ..+++++. ++.+.+|+....... ..... ...+..++|++++..++.+ . . +
T Consensus 163 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-------------~~~~~~~~~~~~g~~~~v~~~~~~~~ 224 (301)
T d1l0qa2 163 IAVTPDG-TKVYVANFDSMSISVIDTVTNSVI----DTVKV-------------EAAPSGIAVNPEGTKAYVTNVDKYFN 224 (301)
T ss_dssp EEECTTS-SEEEEEETTTTEEEEEETTTTEEE----EEEEC-------------SSEEEEEEECTTSSEEEEEEECSSCC
T ss_pred EEeeccc-cceeeecccccccccccccceeee----ecccc-------------cCCcceeeccccccccccccccceee
Confidence 9999998 55555555 567778877665432 11111 1356789999999988753 2 2 7
Q ss_pred eEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEE-EEEeCCCcEEEEecCCCceeeeeec
Q 010256 363 TLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV-ATGSYSNLFRVFGCSEGSAESTTLE 438 (514)
Q Consensus 363 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~ 438 (514)
.|.+||+.+ ++.+..+..+.. +..++|+|||++| ++++.|+.|++||+++++. ..++.
T Consensus 225 ~v~v~D~~t-~~~~~~~~~~~~----------------~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~-~~~~~ 283 (301)
T d1l0qa2 225 TVSMIDTGT-NKITARIPVGPD----------------PAGIAVTPDGKKVYVALSFCNTVSVIDTATNTI-TATMA 283 (301)
T ss_dssp EEEEEETTT-TEEEEEEECCSS----------------EEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE
T ss_pred eeeeeecCC-CeEEEEEcCCCC----------------EEEEEEeCCCCEEEEEECCCCeEEEEECCCCeE-EEEEe
Confidence 899999997 777776655432 2389999999986 5777899999999998843 34443
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.89 E-value=8.7e-22 Score=180.40 Aligned_cols=302 Identities=7% Similarity=-0.004 Sum_probs=189.0
Q ss_pred EEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeec-cCCCccccccccccccceeEEE
Q 010256 41 IEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQ-SHEPEFDYLKSLEIEEKINKIR 119 (514)
Q Consensus 41 ~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~v~~i~ 119 (514)
++|++++++|++++.++.|.+||+.+++. +.++. .|. ..+.+++
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~-----------------------~~t~~~~~~------------~~p~~l~ 46 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTV-----------------------YKSCVMPDK------------FGPGTAM 46 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEE-----------------------EEEEECSSC------------CSSCEEE
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCE-----------------------EEEEEcCCC------------CCcceEE
Confidence 47899999999999999999999988763 34444 233 5578999
Q ss_pred EeeCCCCcEEEE-eeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcc
Q 010256 120 WCQSANSALYLL-STNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSS 198 (514)
Q Consensus 120 ~~~~~~~~~l~s-~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 198 (514)
| ++||+++++ +..++.|.+||+.+++............. ....+..++++|||+.+............
T Consensus 47 ~--spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~---------~~~~~~~v~~s~DG~~l~v~~~~~~~~~~ 115 (346)
T d1jmxb_ 47 M--APDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGE---------VGRSMYSFAISPDGKEVYATVNPTQRLND 115 (346)
T ss_dssp E--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTE---------EEECSSCEEECTTSSEEEEEEEEEEECSS
T ss_pred E--CCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccc---------cCCceEEEEEecCCCEEEEEecCCcceee
Confidence 9 678888755 56789999999999987766554322110 01123378999999987332211111111
Q ss_pred cCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcc
Q 010256 199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANM 278 (514)
Q Consensus 199 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 278 (514)
.....+..+.+|+ ...... ...... ......+..+.+++++..++++ ..+.+|++.+.+....+ ..
T Consensus 116 ~~~~~~~~i~~~~-~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~----- 181 (346)
T d1jmxb_ 116 HYVVKPPRLEVFS-TADGLE---AKPVRT--FPMPRQVYLMRAADDGSLYVAG--PDIYKMDVKTGKYTVAL-PL----- 181 (346)
T ss_dssp CEEECCCEEEEEE-GGGGGG---BCCSEE--EECCSSCCCEEECTTSCEEEES--SSEEEECTTTCCEEEEE-CS-----
T ss_pred eeccCcceEEEEe-ccccee---eeEEEe--eeccCceEEEEecCCCEEEEeC--CcceEEEccCCCEEEEE-ec-----
Confidence 2233456677776 221111 111111 1122345566777888777654 44788998765543322 11
Q ss_pred cccCCceEEEEEecCC-------------------------CcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCc
Q 010256 279 EDLTEVITSAEFHPTH-------------------------CNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGT 333 (514)
Q Consensus 279 ~~~~~~i~~v~~~p~~-------------------------~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 333 (514)
......+.++|++ ...++++..+..+.+||+.++...
T Consensus 182 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 243 (346)
T d1jmxb_ 182 ---RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH--------------- 243 (346)
T ss_dssp ---TTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEE---------------
T ss_pred ---CCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceE---------------
Confidence 0111122222222 133444555566777777665532
Q ss_pred cceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEE
Q 010256 334 RSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 413 (514)
Q Consensus 334 ~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 413 (514)
......|...+..+.+++++.+++....+.|.+||..+ ++.+..+..... +.+++|+|||++|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~-~~~~~~~~~~~~----------------~~~va~s~DG~~l 306 (346)
T d1jmxb_ 244 TQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQ-RKLIKAANLDHT----------------YYCVAFDKKGDKL 306 (346)
T ss_dssp EEEEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTT-TEEEEEEECSSC----------------CCEEEECSSSSCE
T ss_pred EEEeecccceeEEEEEeCCCCEEEEecCCeEEEEECCC-CcEEEEEcCCCC----------------EEEEEEcCCCCEE
Confidence 11233445678899999999999887778999999987 776666653322 2389999999999
Q ss_pred EEEeCCCcEEEEecCCCceeeeeec
Q 010256 414 ATGSYSNLFRVFGCSEGSAESTTLE 438 (514)
Q Consensus 414 ~s~~~dg~i~iwd~~~~~~~~~~~~ 438 (514)
++++.|+.|++||+++++.. .+++
T Consensus 307 ~v~~~d~~v~v~D~~t~~~i-~~i~ 330 (346)
T d1jmxb_ 307 YLGGTFNDLAVFNPDTLEKV-KNIK 330 (346)
T ss_dssp EEESBSSEEEEEETTTTEEE-EEEE
T ss_pred EEEeCCCcEEEEECccCCEE-EEEE
Confidence 99999999999999987443 4444
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.87 E-value=2.2e-20 Score=170.28 Aligned_cols=296 Identities=7% Similarity=0.017 Sum_probs=179.9
Q ss_pred CeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEEEeeCCCCc
Q 010256 48 DHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSA 127 (514)
Q Consensus 48 ~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~ 127 (514)
+||++++.|++|.|||+++++. ..++..+.. ...+.+++| ++||+
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~-----------------------~~~i~~~~~----------~~~~~~i~~--spDg~ 46 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAV-----------------------DKVITIADA----------GPTPMVPMV--APGGR 46 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEE-----------------------EEEEECTTC----------TTCCCCEEE--CTTSS
T ss_pred eEEEEEcCCCEEEEEECCCCeE-----------------------EEEEECCCC----------CCCccEEEE--CCCCC
Confidence 5899999999999999987763 334433220 045788999 67888
Q ss_pred EEE-EeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCc
Q 010256 128 LYL-LSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSS 206 (514)
Q Consensus 128 ~l~-s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 206 (514)
+++ +++.++.|.+||+.+++............ ....+..++++|+++.+.................+..
T Consensus 47 ~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~----------~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~ 116 (337)
T d1pbyb_ 47 IAYATVNKSESLVKIDLVTGETLGRIDLSTPEE----------RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTR 116 (337)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECCBTTE----------EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCE
T ss_pred EEEEEECCCCeEEEEECCCCcEEEEEecCCCcc----------cccceeeEEEcCCCcEEEEeecCCcceeeeccccccc
Confidence 875 56789999999999998776655442110 0012227889999998722111111111111223445
Q ss_pred EEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcc--------
Q 010256 207 LRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANM-------- 278 (514)
Q Consensus 207 i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~-------- 278 (514)
+.+|| ... ...... ..+...+..++|+|+|++++++. +.+.+||..+.+....+ .......
T Consensus 117 ~~~~d-~~~------~~~~~~--~~~~~~~~~~~~s~dg~~l~~~~-~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~ 185 (337)
T d1pbyb_ 117 VALYD-AET------LSRRKA--FEAPRQITMLAWARDGSKLYGLG-RDLHVMDPEAGTLVEDK-PIQSWEAETYAQPDV 185 (337)
T ss_dssp EEEEE-TTT------TEEEEE--EECCSSCCCEEECTTSSCEEEES-SSEEEEETTTTEEEEEE-CSTTTTTTTBCCCBC
T ss_pred eeecc-ccC------CeEEEe--ccccCCceEEEEcCCCCEEEEEc-CCcceeeeecCcEEEEe-ecCCccccceecCCc
Confidence 55555 111 112222 12345678899999999998873 33678998865543322 1110000
Q ss_pred -----cccCCc---eEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEe
Q 010256 279 -----EDLTEV---ITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (514)
Q Consensus 279 -----~~~~~~---i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 350 (514)
...... ........+. ..+..+..++.+.+||+.++.... ..+..+...+..++++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~ 249 (337)
T d1pbyb_ 186 LAVWNQHESSGVMATPFYTARKDI-DPADPTAYRTGLLTMDLETGEMAM---------------REVRIMDVFYFSTAVN 249 (337)
T ss_dssp CCCCCCCTTTTEEEEEEEEEBTTS-CTTSGGGEEEEEEEEETTTCCEEE---------------EEEEECSSCEEEEEEC
T ss_pred ceeeccccccceeeeeeeeeeecc-ceeeecccCccEEEEEcCCCcEEE---------------EEecCCCcceEEEEec
Confidence 000000 0011111111 122223345567888887765421 1123344578888999
Q ss_pred cCCCEEEEEeCCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 351 RNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 351 ~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
|++.+++.++ +.|++||+.+ ++.+..+..... +.+++|+|||++|++++.|+.|++||.+++
T Consensus 250 ~~~~~~~~~~-~~i~v~d~~~-~~~~~~~~~~~~----------------~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~ 311 (337)
T d1pbyb_ 250 PAKTRAFGAY-NVLESFDLEK-NASIKRVPLPHS----------------YYSVNVSTDGSTVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp TTSSEEEEEE-SEEEEEETTT-TEEEEEEECSSC----------------CCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred ccceEEEEcc-ccEEEEECCC-CcEEEEEcCCCC----------------EEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 9999887654 7999999997 777776654322 228999999999999999999999999987
Q ss_pred cee
Q 010256 431 SAE 433 (514)
Q Consensus 431 ~~~ 433 (514)
+..
T Consensus 312 ~~v 314 (337)
T d1pbyb_ 312 EKK 314 (337)
T ss_dssp CEE
T ss_pred cEE
Confidence 544
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.86 E-value=6.1e-19 Score=163.20 Aligned_cols=324 Identities=6% Similarity=-0.028 Sum_probs=201.3
Q ss_pred ccccceEEEEEcCCCCeEEEec-----CCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccccc
Q 010256 33 QEVDIISAIEFDKSGDHLATGD-----RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLK 107 (514)
Q Consensus 33 ~h~~~V~~~~~s~~g~~l~tg~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 107 (514)
.+..++.+++++|||+.++... ..+.|.+||..+++. +.++..+.
T Consensus 18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~-----------------------~~~~~~~~------- 67 (373)
T d2madh_ 18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSI-----------------------LGHVNGGF------- 67 (373)
T ss_pred cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCE-----------------------EEEEeCCC-------
Confidence 5678899999999999987642 345799999887773 34455444
Q ss_pred ccccccceeEEEEeeCCCCcEEEEee----------CCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCce
Q 010256 108 SLEIEEKINKIRWCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPK 177 (514)
Q Consensus 108 ~~~~~~~v~~i~~~~~~~~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 177 (514)
...+.| ++||++|++++ .++.|.+||..+++............ ......+..+
T Consensus 68 -------~~~~a~--SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~--------~~~~~~~~~~ 130 (373)
T d2madh_ 68 -------LPNPVA--AHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPR--------FDVGPYSWMN 130 (373)
T ss_pred -------CccEEE--cCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcce--------eEeccCCCcE
Confidence 336888 67888988874 46789999999998776665543221 1111222367
Q ss_pred eeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEE-Ee-cCCe
Q 010256 178 SYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI-SA-DDLR 255 (514)
Q Consensus 178 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~-~d~~ 255 (514)
.++++++.+.+ .....++.+.+|+ ..... ...+.....++.++|+++.++ +. .|+.
T Consensus 131 ~~s~dg~~~~v----------~~~~~~~~~~~~~-~~~~~-----------~~~~~~~~~~~~~s~~g~~~~v~~~~dg~ 188 (373)
T d2madh_ 131 ANTPNNADLLF----------FQFAAGPAVGLVV-QGGSS-----------DDQLLSSPTCYHIHPGAPSTFYLLCAQGG 188 (373)
T ss_pred EEEeCCCcEEE----------EEEcCCCceEEee-ccCCe-----------EEEEeccceeEEEecCCCcEEEEEcCCCe
Confidence 89999987611 2223455666666 21111 123334567889999987664 45 8999
Q ss_pred EEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccc
Q 010256 256 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRS 335 (514)
Q Consensus 256 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 335 (514)
+.+|+............. ............+.+.+++ .++..+.++.+.+|+......... ..+...... ..
T Consensus 189 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~~--~~ 260 (373)
T d2madh_ 189 LAKTDHAGGAAGAGLVGA--MLTAAQNLLTQPAQANKSG--RIVWPVYSGKILQADISAAGATNK--APIDALSGG--RK 260 (373)
T ss_pred EEEEEcCCceeeEEEeee--ccccCccceeeeEEECCCc--eEEEecCCceEEEEEcCCCeEEEE--EeeccccCc--EE
Confidence 999999865443222100 0111122233445566654 566677899999999887653211 111111000 00
Q ss_pred eeeccccceeEEEEecCCCEEE----------EEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeE
Q 010256 336 FFTEIIASISDIKFARNGRHIL----------SRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFEC 404 (514)
Q Consensus 336 ~~~~~~~~i~~~~~s~~g~~l~----------~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 404 (514)
...........+++++++..++ ... ++.+.+||..+ ++.+..+..... +..+
T Consensus 261 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t-~~~~~~~~~~~~----------------~~~~ 323 (373)
T d2madh_ 261 ADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV-GQTSSQISLGHD----------------VDAI 323 (373)
T ss_pred eeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCC-CcEEEEecCCCC----------------eeEE
Confidence 0001112344556666665544 222 37899999987 777776654332 2389
Q ss_pred EEcCCCCE--EEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECC
Q 010256 405 CLSGDGGR--VATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTP 451 (514)
Q Consensus 405 ~~s~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 451 (514)
+|+|||+. +++++.|+.|++||+.+++ ....+..+......+++.+
T Consensus 324 a~spDG~~~l~vt~~~d~~v~v~D~~tg~-~~~~~~~~g~~P~~l~~~~ 371 (373)
T d2madh_ 324 SVAQDGGPDLYALSAGTEVLHIYDAGAGD-QDQSTVELGSGPQVLSVMN 371 (373)
T ss_pred EECCCCCEEEEEEeCCCCeEEEEECCCCC-EEEEECCCCCCCcEEEEec
Confidence 99999984 4688999999999999985 4578877766666666644
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.86 E-value=2e-19 Score=161.00 Aligned_cols=260 Identities=10% Similarity=0.134 Sum_probs=185.9
Q ss_pred EEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEE
Q 010256 129 YLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLR 208 (514)
Q Consensus 129 l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~ 208 (514)
+++.+.|++|.+||+.+++..........+ ..++++|||+.+ ++++..++.|+
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p----------------~~va~spdG~~l-----------~v~~~~~~~i~ 57 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTATIPVGSNP----------------MGAVISPDGTKV-----------YVANAHSNDVS 57 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECSSSE----------------EEEEECTTSSEE-----------EEEEGGGTEEE
T ss_pred EEEECCCCEEEEEECCCCeEEEEEECCCCc----------------eEEEEeCCCCEE-----------EEEECCCCEEE
Confidence 345678999999999999988777654221 278999999976 14566789999
Q ss_pred eceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCceE
Q 010256 209 LPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT 286 (514)
Q Consensus 209 i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 286 (514)
+|| +.+.+ ....+ ..+ ..+..++|++++..++.+ .++.+.+|+..+.+....+ .+...+.
T Consensus 58 v~d-~~t~~------~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 119 (301)
T d1l0qa2 58 IID-TATNN------VIATV-PAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV---------KTGKSPL 119 (301)
T ss_dssp EEE-TTTTE------EEEEE-ECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE---------ECSSSEE
T ss_pred EEE-CCCCc------eeeee-ecc-ccccccccccccccccccccccceeeecccccceeeeec---------cccccce
Confidence 999 33322 22222 233 346889999999876654 7899999999865443221 2345678
Q ss_pred EEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-C-CeE
Q 010256 287 SAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTL 364 (514)
Q Consensus 287 ~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~-~~i 364 (514)
.+.|+|++..+++++..++.+.+|+..+.... ..+... ..+..++++|+++.++++. + +.+
T Consensus 120 ~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (301)
T d1l0qa2 120 GLALSPDGKKLYVTNNGDKTVSVINTVTKAVI----NTVSVG-------------RSPKGIAVTPDGTKVYVANFDSMSI 182 (301)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTTEEE----EEEECC-------------SSEEEEEECTTSSEEEEEETTTTEE
T ss_pred EEEeecCCCeeeeeeccccceeeeecccccee----eecccC-------------CCceEEEeeccccceeeeccccccc
Confidence 99999999555667777899999999887652 222221 3578899999999888764 4 788
Q ss_pred EEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe---CCCcEEEEecCCCceeeeeecCCC
Q 010256 365 KLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS---YSNLFRVFGCSEGSAESTTLEASK 441 (514)
Q Consensus 365 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~ 441 (514)
.+|+... .+.......+... ..++|+++++.++.++ .++.|++||+.+++. ...+..+
T Consensus 183 ~~~~~~~-~~~~~~~~~~~~~----------------~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~-~~~~~~~- 243 (301)
T d1l0qa2 183 SVIDTVT-NSVIDTVKVEAAP----------------SGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI-TARIPVG- 243 (301)
T ss_dssp EEEETTT-TEEEEEEECSSEE----------------EEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE-EEEEECC-
T ss_pred ccccccc-eeeeecccccCCc----------------ceeeccccccccccccccceeeeeeeeecCCCeE-EEEEcCC-
Confidence 8888775 5555554444322 2789999999887654 346899999998744 3455544
Q ss_pred cceeEEEECCCCCce-eecCCCCeEEEee
Q 010256 442 NPMRRQVQTPSRPSR-PLGSLSGVVRRVK 469 (514)
Q Consensus 442 ~~v~~~~~~~~~~~l-~s~s~d~~v~i~~ 469 (514)
..+..++|+|||++| ++++.|+.|++++
T Consensus 244 ~~~~~va~spdg~~l~va~~~~~~i~v~D 272 (301)
T d1l0qa2 244 PDPAGIAVTPDGKKVYVALSFCNTVSVID 272 (301)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 456899999999976 6888899999943
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.84 E-value=6.7e-19 Score=161.67 Aligned_cols=318 Identities=8% Similarity=-0.002 Sum_probs=191.3
Q ss_pred eEEEEEcCCCCeEEEec-----CCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccc
Q 010256 38 ISAIEFDKSGDHLATGD-----RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIE 112 (514)
Q Consensus 38 V~~~~~s~~g~~l~tg~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 112 (514)
+.-.+.+|||+.+++.. .++.|.+||..+++. +.++..+.
T Consensus 4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~-----------------------~~~~~~g~------------ 48 (355)
T d2bbkh_ 4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRV-----------------------IGMIDGGF------------ 48 (355)
T ss_dssp CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEE-----------------------EEEEEECS------------
T ss_pred cEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcE-----------------------EEEEECCC------------
Confidence 33446689999987653 456799999987763 34444443
Q ss_pred cceeEEEEeeCCCCcEEEEee----------CCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccC
Q 010256 113 EKINKIRWCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMAN 182 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 182 (514)
+..++| ++||++|++++ .|+.|++||..+++............... ...+..++|+|+
T Consensus 49 --~~~~a~--SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~--------~~~~~~~~~s~d 116 (355)
T d2bbkh_ 49 --LPNPVV--ADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV--------GTYPWMTSLTPD 116 (355)
T ss_dssp --SCEEEE--CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB--------SCCGGGEEECTT
T ss_pred --CCceEE--cCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeec--------CCCCceEEEecC
Confidence 446889 67888787643 47899999999998777665543221111 112236789999
Q ss_pred CCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCeEEEEe
Q 010256 183 GGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWN 260 (514)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd 260 (514)
++.+.. +..+.+..+.+|+ ....+.....................+.++++++.++.. .++.+.+++
T Consensus 117 g~~~~v----------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~ 185 (355)
T d2bbkh_ 117 GKTLLF----------YQFSPAPAVGVVD-LEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH 185 (355)
T ss_dssp SSEEEE----------EECSSSCEEEEEE-TTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE
T ss_pred CCeeEE----------ecCCCCceeeeee-cCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEe
Confidence 998721 3334566778777 322211100000000000011233456677777776654 466666666
Q ss_pred ccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeecc
Q 010256 261 LEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEI 340 (514)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (514)
...... .+...+....+.+++ ..++.++.++.+.+|++..+.... ......+... .......
T Consensus 186 ~~~~~~-------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~--~~~~~~~ 247 (355)
T d2bbkh_ 186 TEVFHP-------------EDEFLINHPAYSQKA-GRLVWPTYTGKIHQIDLSSGDAKF--LPAVEALTEA--ERADGWR 247 (355)
T ss_dssp CCCCSC-------------TTSCBCSCCEEETTT-TEEEEEBTTSEEEEEECTTSSCEE--CCCEESSCHH--HHHTTEE
T ss_pred cccccc-------------eecceeeeccccCCC-CeEEEecCCCeEEEEecCCCcEEE--EeccCCcccc--eEeeeee
Confidence 543321 123334455677777 688889999999999998875321 1111111000 0000001
Q ss_pred ccceeEEEEecCCCEEEEEeC-----------CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCC
Q 010256 341 IASISDIKFARNGRHILSRDY-----------MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGD 409 (514)
Q Consensus 341 ~~~i~~~~~s~~g~~l~~~~~-----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 409 (514)
......+++++++..++.... ..|.+||..+ ++.+..+...... .+++|+||
T Consensus 248 p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t-~~~~~~~~~~~~~----------------~~~a~spD 310 (355)
T d2bbkh_ 248 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT-GERLAKFEMGHEI----------------DSINVSQD 310 (355)
T ss_dssp ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEEEEE----------------CEEEECCS
T ss_pred ccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCC-CcEEEEecCCCCE----------------EEEEEcCC
Confidence 123456889999998876321 4799999997 7777777654332 28999999
Q ss_pred CC--EEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEE
Q 010256 410 GG--RVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQ 449 (514)
Q Consensus 410 ~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 449 (514)
|+ ++++++.|+.|++||+++++. ..++..+......+.+
T Consensus 311 G~~~l~v~~~~d~~i~v~D~~tg~~-~~~i~~~G~~p~~i~~ 351 (355)
T d2bbkh_ 311 EKPLLYALSTGDKTLYIHDAESGEE-LRSVNQLGHGPQVITT 351 (355)
T ss_dssp SSCEEEEEETTTTEEEEEETTTCCE-EEEECCCCSSCCEEEC
T ss_pred CCeEEEEEECCCCEEEEEECCCCCE-EEEEeCcCCCccEEEe
Confidence 98 456777899999999999854 4566655444444443
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.84 E-value=4.5e-19 Score=161.37 Aligned_cols=251 Identities=12% Similarity=0.080 Sum_probs=159.7
Q ss_pred CeEEEEECCCCCEEE-Ee-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEec---------
Q 010256 235 HINSISNNSDGETFI-SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS--------- 303 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~-s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~--------- 303 (514)
.+.+++|+|||++++ ++ .++.|.+||+.+++....+. .. ....+...+..++|+|++ +.++++..
T Consensus 35 ~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~-~~--~~~~~~~~~~~v~~s~dg-~~l~~~~~~~~~~~~~~ 110 (337)
T d1pbyb_ 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRID-LS--TPEERVKSLFGAALSPDG-KTLAIYESPVRLELTHF 110 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEE-CC--BTTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCE
T ss_pred CccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEe-cC--CCcccccceeeEEEcCCC-cEEEEeecCCcceeeec
Confidence 456789999999874 56 79999999999776544321 10 111123345578999999 67776653
Q ss_pred ---CCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceeeee
Q 010256 304 ---KGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVATFQ 380 (514)
Q Consensus 304 ---dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~ 380 (514)
+..+.+||..++... ..+.. ...+..++|+|+|+++++++. .+.+||..+ ++....+.
T Consensus 111 ~~~~~~~~~~d~~~~~~~----~~~~~-------------~~~~~~~~~s~dg~~l~~~~~-~~~~~d~~~-~~~~~~~~ 171 (337)
T d1pbyb_ 111 EVQPTRVALYDAETLSRR----KAFEA-------------PRQITMLAWARDGSKLYGLGR-DLHVMDPEA-GTLVEDKP 171 (337)
T ss_dssp EECCCEEEEEETTTTEEE----EEEEC-------------CSSCCCEEECTTSSCEEEESS-SEEEEETTT-TEEEEEEC
T ss_pred cccccceeeccccCCeEE----Eeccc-------------cCCceEEEEcCCCCEEEEEcC-Ccceeeeec-CcEEEEee
Confidence 567888888877642 22222 145778999999999998753 578899987 66666655
Q ss_pred ecccccccccc-----ccccCCc---cceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCC
Q 010256 381 VHEHLRPKLCD-----LYENDSI---FDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS 452 (514)
Q Consensus 381 ~~~~~~~~~~~-----~~~~~~~---~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 452 (514)
.+......... ++..... ..........+...+..++.++.+.+|+..++......+..+...+..+.++|+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (337)
T d1pbyb_ 172 IQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPA 251 (337)
T ss_dssp STTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTT
T ss_pred cCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEeccc
Confidence 44322111000 0000000 000011112222223334455679999999886665667778888889999999
Q ss_pred CCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCCCEEEEEe-cCcEEEEeC
Q 010256 453 RPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMYYA 514 (514)
Q Consensus 453 ~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~~i~~~ 514 (514)
+.+++.+ ++.+++++..... . .....+...+.+++|+|||++|++++ ++.+.+|.+
T Consensus 252 ~~~~~~~--~~~i~v~d~~~~~---~-~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~ 308 (337)
T d1pbyb_ 252 KTRAFGA--YNVLESFDLEKNA---S-IKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDA 308 (337)
T ss_dssp SSEEEEE--ESEEEEEETTTTE---E-EEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred ceEEEEc--cccEEEEECCCCc---E-EEEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 9998776 5788884332211 1 11223567789999999999999887 666888864
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=1.4e-17 Score=151.22 Aligned_cols=294 Identities=9% Similarity=0.058 Sum_probs=178.5
Q ss_pred eEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEEEeeCCCCcE
Q 010256 49 HLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQSANSAL 128 (514)
Q Consensus 49 ~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~~~~~~~~~ 128 (514)
.+++++.|++|++|++.+.... ..+. ...|. +.+..|+| ++||++
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l--------------------~~~~-~~~~~------------~~v~~la~--spDG~~ 50 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGAL--------------------TLTQ-VVDVP------------GQVQPMVV--SPDKRY 50 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCE--------------------EEEE-EEECS------------SCCCCEEE--CTTSSE
T ss_pred EEEECCCCCcEEEEEEcCCCCe--------------------EEEE-EEcCC------------CCEeEEEE--eCCCCE
Confidence 3567789999999999754421 1111 22343 77999999 678888
Q ss_pred EEEe-eCCCeEEEEEcCccEEE--EEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCC-CC
Q 010256 129 YLLS-TNDKTIKLWKVQEKKVK--KVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPG-GV 204 (514)
Q Consensus 129 l~s~-~~d~~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~ 204 (514)
|+++ ..|+.|++|++...... ....... ...+..++|+|||+.+ ++++ .+
T Consensus 51 L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~--------------~~~p~~l~~spDg~~l------------~v~~~~~ 104 (333)
T d1ri6a_ 51 LYVGVRPEFRVLAYRIAPDDGALTFAAESAL--------------PGSLTHISTDHQGQFV------------FVGSYNA 104 (333)
T ss_dssp EEEEETTTTEEEEEEECTTTCCEEEEEEEEC--------------SSCCSEEEECTTSSEE------------EEEETTT
T ss_pred EEEEECCCCeEEEEEEeCCCCcEEEeeeccc--------------CCCceEEEEcCCCCEE------------eecccCC
Confidence 8665 45899999998764321 1111110 0112278999999987 5555 46
Q ss_pred CcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccC
Q 010256 205 SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLT 282 (514)
Q Consensus 205 ~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 282 (514)
+.+.+|+ ........ . .....+...+.++.++|++++++.+ .+..|.+|+............. .......
T Consensus 105 ~~v~~~~-~~~~~~~~---~--~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~g 176 (333)
T d1ri6a_ 105 GNVSVTR-LEDGLPVG---V--VDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPA--EVTTVEG 176 (333)
T ss_dssp TEEEEEE-EETTEEEE---E--EEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE--EEECSTT
T ss_pred Cceeeec-ccccccee---c--ccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeece--eeeeecC
Confidence 7888877 22221111 1 1113455678889999999988877 6788999998765433221100 0112234
Q ss_pred CceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe--
Q 010256 283 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-- 360 (514)
Q Consensus 283 ~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-- 360 (514)
.....++|++++...+.+....+...+|+................... ..........+++++++++++...
T Consensus 177 ~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~s~d~~~~~~~~~~ 250 (333)
T d1ri6a_ 177 AGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPE------NFSDTRWAADIHITPDGRHLYACDRT 250 (333)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCT------TCCSCCCEEEEEECTTSSEEEEEETT
T ss_pred CCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeec------CCCccccceeEEEecccCceeeeccc
Confidence 567899999998444445556778888887554322111111111000 011224567789999999888753
Q ss_pred CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEe-CCCcEEEEec--CCC
Q 010256 361 YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGS-YSNLFRVFGC--SEG 430 (514)
Q Consensus 361 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iwd~--~~~ 430 (514)
++.+.+|++.. .........+..... . ...++|+|||++|++++ .++.|.+|++ ++|
T Consensus 251 ~~~~~~~~~~~-~~~~~~~~~~~~~~~---------~---p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG 310 (333)
T d1ri6a_ 251 ASLITVFSVSE-DGSVLSKEGFQPTET---------Q---PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQG 310 (333)
T ss_dssp TTEEEEEEECT-TSCCEEEEEEEECSS---------S---CCCEEECTTSSEEEEECTTTCEEEEEEEETTTT
T ss_pred CCeEEEEEEcC-CCCEEEEEEEeCCCC---------C---eeEEEEeCCCCEEEEEECCCCeEEEEEEECCCC
Confidence 38999999986 333333332221110 0 12799999999877665 5689999955 454
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.83 E-value=3.3e-19 Score=162.94 Aligned_cols=291 Identities=10% Similarity=0.096 Sum_probs=184.1
Q ss_pred CCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCC
Q 010256 123 SANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPG 202 (514)
Q Consensus 123 ~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 202 (514)
++++++|++++.+++|.+||+.++++.......
T Consensus 5 ~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~----------------------------------------------- 37 (346)
T d1jmxb_ 5 KAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMP----------------------------------------------- 37 (346)
T ss_dssp CTTCEEEEEEETTTEEEEEETTTTEEEEEEECS-----------------------------------------------
T ss_pred CCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcC-----------------------------------------------
Confidence 577889999999999999999998865543322
Q ss_pred CCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEE-Ee-cCCeEEEEeccCCCceeeeeccCCCcccc
Q 010256 203 GVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFI-SA-DDLRINLWNLEISNQSFNIVDVKPANMED 280 (514)
Q Consensus 203 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 280 (514)
|...+.+++|+|||++++ ++ .++.|.+||+.+.+....+... .....
T Consensus 38 -----------------------------~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~--~~~~~ 86 (346)
T d1jmxb_ 38 -----------------------------DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS--SVPGE 86 (346)
T ss_dssp -----------------------------SCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC--CSTTE
T ss_pred -----------------------------CCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc--ccccc
Confidence 223456899999999875 45 7999999999976554332110 01111
Q ss_pred cCCceEEEEEecCCCcEEEEEe------------cCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEE
Q 010256 281 LTEVITSAEFHPTHCNMLAYSS------------SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (514)
Q Consensus 281 ~~~~i~~v~~~p~~~~~l~~~~------------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (514)
+...+..++|+||| +++++++ .++.+.+||..+++... .+..... ...+..+.
T Consensus 87 ~~~~~~~v~~s~DG-~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~----------~~~~~~~~ 151 (346)
T d1jmxb_ 87 VGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK----PVRTFPM----------PRQVYLMR 151 (346)
T ss_dssp EEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC----CSEEEEC----------CSSCCCEE
T ss_pred cCCceEEEEEecCC-CEEEEEecCCcceeeeeccCcceEEEEecccceeee----EEEeeec----------cCceEEEE
Confidence 22345678999999 6666554 46788899988776531 1211110 13456677
Q ss_pred EecCCCEEEEEeCCeEEEEEccCCCCceeeeeecccccccccc-----ccccCC---ccce--eeEEEcCCCCEEEEEeC
Q 010256 349 FARNGRHILSRDYMTLKLWDINMDSGPVATFQVHEHLRPKLCD-----LYENDS---IFDK--FECCLSGDGGRVATGSY 418 (514)
Q Consensus 349 ~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~---~~~v--~~~~~s~~~~~l~s~~~ 418 (514)
+++++++++++ ..+.+|++.+ ++.+..+..+......... ++.... ...+ ....+.+....++++..
T Consensus 152 ~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (346)
T d1jmxb_ 152 AADDGSLYVAG--PDIYKMDVKT-GKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL 228 (346)
T ss_dssp ECTTSCEEEES--SSEEEECTTT-CCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEE
T ss_pred ecCCCEEEEeC--CcceEEEccC-CCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccC
Confidence 78888777654 3588999986 7777776654432110000 000000 0000 01222334445556667
Q ss_pred CCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeCCCCCccccCCcccccccceEEEEEcCCC
Q 010256 419 SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSE 498 (514)
Q Consensus 419 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~~~~~~~~~~~~~~~~~~~v~~~~~spd~ 498 (514)
++.+.+|+..++.........+...+....+++++.++++... +.+++++..... .. ....+...+.+++|||||
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~---~~-~~~~~~~~~~~va~s~DG 303 (346)
T d1jmxb_ 229 LYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRK---LI-KAANLDHTYYCVAFDKKG 303 (346)
T ss_dssp EEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTE---EE-EEEECSSCCCEEEECSSS
T ss_pred CceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCc---EE-EEEcCCCCEEEEEEcCCC
Confidence 7789999999887666777788888999999999999888765 457774322111 11 112345678999999999
Q ss_pred CEEEEEe-cCcEEEEeC
Q 010256 499 NSIACAA-SNSLYMYYA 514 (514)
Q Consensus 499 ~~l~~~~-~~~~~i~~~ 514 (514)
++|++++ ++.+.+|.+
T Consensus 304 ~~l~v~~~d~~v~v~D~ 320 (346)
T d1jmxb_ 304 DKLYLGGTFNDLAVFNP 320 (346)
T ss_dssp SCEEEESBSSEEEEEET
T ss_pred CEEEEEeCCCcEEEEEC
Confidence 9999887 667888864
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=1.4e-16 Score=144.49 Aligned_cols=285 Identities=13% Similarity=0.126 Sum_probs=174.8
Q ss_pred EEEEeeCCCeEEEEEcCccE-E--EEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCC
Q 010256 128 LYLLSTNDKTIKLWKVQEKK-V--KKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGV 204 (514)
Q Consensus 128 ~l~s~~~d~~i~iw~~~~~~-~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 204 (514)
.+++++.|++|++|++.... + ....... +.+ ..++|+|||+.| ++++..+
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~---------~~v-------~~la~spDG~~L-----------~v~~~~d 58 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVP---------GQV-------QPMVVSPDKRYL-----------YVGVRPE 58 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECS---------SCC-------CCEEECTTSSEE-----------EEEETTT
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCC---------CCE-------eEEEEeCCCCEE-----------EEEECCC
Confidence 45677899999999986542 2 2222322 222 289999999987 1344568
Q ss_pred CcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccC
Q 010256 205 SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLT 282 (514)
Q Consensus 205 ~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 282 (514)
+.|++|+ +......... .....+...+..++|+|||++|+++ .++.|.+|+.......... ....+.
T Consensus 59 ~~i~~~~-i~~~~~~~~~----~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~------~~~~~~ 127 (333)
T d1ri6a_ 59 FRVLAYR-IAPDDGALTF----AAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVV------DVVEGL 127 (333)
T ss_dssp TEEEEEE-ECTTTCCEEE----EEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEE------EEECCC
T ss_pred CeEEEEE-EeCCCCcEEE----eeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecc------cccCCC
Confidence 9999999 4332211110 0012233456789999999999887 5889999998754433221 233456
Q ss_pred CceEEEEEecCCCcEEEEEe-cCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-
Q 010256 283 EVITSAEFHPTHCNMLAYSS-SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD- 360 (514)
Q Consensus 283 ~~i~~v~~~p~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~- 360 (514)
..+.++.++|++ +.++.++ .+..|.+|+............... ..........++|++++.+++...
T Consensus 128 ~~~~~v~~s~d~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----------~~~~g~~p~~i~~~~~~~~~~~~~~ 196 (333)
T d1ri6a_ 128 DGCHSANISPDN-RTLWVPALKQDRICLFTVSDDGHLVAQDPAEV----------TTVEGAGPRHMVFHPNEQYAYCVNE 196 (333)
T ss_dssp TTBCCCEECTTS-SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEE----------ECSTTCCEEEEEECTTSSEEEEEET
T ss_pred ccceEEEeeecc-eeeeccccccceeeEEEeccCCcceeeeceee----------eeecCCCccEEEEeccceeEEeecc
Confidence 677889999999 5655555 567899999876543211000000 011224567899999999988753
Q ss_pred C-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEE-eCCCcEEEEecCCCceeee--e
Q 010256 361 Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSAEST--T 436 (514)
Q Consensus 361 ~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~--~ 436 (514)
. +...+|+.......+............ .........+++++|+++++.. ..++.+.+|++........ .
T Consensus 197 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (333)
T d1ri6a_ 197 LNSSVDVWELKDPHGNIECVQTLDMMPEN------FSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEG 270 (333)
T ss_dssp TTTEEEEEESSCTTSCCEEEEEEECSCTT------CCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEE
T ss_pred ccCceEEEeecccccceeeeeeeeeeecC------CCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEE
Confidence 3 788898876522222221111000000 0011112368899999976654 5678899999876543321 2
Q ss_pred ecCCCcceeEEEECCCCCceeec-CCCCeEEE
Q 010256 437 LEASKNPMRRQVQTPSRPSRPLG-SLSGVVRR 467 (514)
Q Consensus 437 ~~~~~~~v~~~~~~~~~~~l~s~-s~d~~v~i 467 (514)
.......+..++|+|||++|+++ +.++.|++
T Consensus 271 ~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v 302 (333)
T d1ri6a_ 271 FQPTETQPRGFNVDHSGKYLIAAGQKSHHISV 302 (333)
T ss_dssp EEECSSSCCCEEECTTSSEEEEECTTTCEEEE
T ss_pred EeCCCCCeeEEEEeCCCCEEEEEECCCCeEEE
Confidence 22334557789999999987655 56688888
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.75 E-value=1.2e-15 Score=140.71 Aligned_cols=298 Identities=8% Similarity=-0.051 Sum_probs=182.3
Q ss_pred cceeEEEEeeCCCCcEEEEe-----eCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccc
Q 010256 113 EKINKIRWCQSANSALYLLS-----TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (514)
Q Consensus 113 ~~v~~i~~~~~~~~~~l~s~-----~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 187 (514)
..+..+++ +++|+.+++. +..+.|.+||..+++..........+ .++|+|||+.+.
T Consensus 21 ~p~~~~a~--spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~-----------------~~a~SpDG~~l~ 81 (373)
T d2madh_ 21 GPTNDEAP--GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP-----------------NPVAAHSGSEFA 81 (373)
T ss_pred CCcccccc--CCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc-----------------cEEEcCCCCEEE
Confidence 67888888 6778787764 34467999999999877765543221 679999999872
Q ss_pred cccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCcc-------CeEEEEECCCCCEEEEe---cCCeEE
Q 010256 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDY-------HINSISNNSDGETFISA---DDLRIN 257 (514)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~-------~v~~~~~~~~~~~l~s~---~d~~i~ 257 (514)
... ........+..++.|.+|| ....+.. ... ..+.. ....+.|+++++.++.. .++.+.
T Consensus 82 va~--~~~~~~~~~~~~~~v~v~D-~~t~~~~------~~~-~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~ 151 (373)
T d2madh_ 82 LAS--TSFSRIAKGKRTDYVEVFD-PVTFLPI------ADI-ELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVG 151 (373)
T ss_pred EEe--ecCCcccccccceEEEEEE-CCCCcEE------EEE-ecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceE
Confidence 211 1111223345678899999 4333221 111 11111 22457788888876654 467788
Q ss_pred EEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCcccee
Q 010256 258 LWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFF 337 (514)
Q Consensus 258 iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (514)
+|+....+.. .+.....++.++|++...+++.+.|+.+.+||...+............
T Consensus 152 ~~~~~~~~~~------------~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~---------- 209 (373)
T d2madh_ 152 LVVQGGSSDD------------QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLT---------- 209 (373)
T ss_pred EeeccCCeEE------------EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccc----------
Confidence 8887744322 234456788999999667788999999999999887653221111110
Q ss_pred eccccceeEEEEecCCCEEEEEeCCeEEEEEccCCCCceee--eeeccccccccccccccCCccceeeEEEcCCCCEE--
Q 010256 338 TEIIASISDIKFARNGRHILSRDYMTLKLWDINMDSGPVAT--FQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV-- 413 (514)
Q Consensus 338 ~~~~~~i~~~~~s~~g~~l~~~~~~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-- 413 (514)
.+.......+.+++++.+++.+.++.+.+|+... ...... ...+........ .... ....+++++++..+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~d~~~~~~ 283 (373)
T d2madh_ 210 AAQNLLTQPAQANKSGRIVWPVYSGKILQADISA-AGATNKAPIDALSGGRKADT--WRPG---GWQQVAYLKSSDGIYL 283 (373)
T ss_pred cCccceeeeEEECCCceEEEecCCceEEEEEcCC-CeEEEEEeeccccCcEEeee--eccC---cceeeEEecCCCeEEE
Confidence 1111234556677777777777778999999875 332211 111111000000 0000 01135566665544
Q ss_pred --------EEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCC--ceeecCCCCeEEEee
Q 010256 414 --------ATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP--SRPLGSLSGVVRRVK 469 (514)
Q Consensus 414 --------~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~v~i~~ 469 (514)
++...++.+.+||..+++.. ..+ .+...+..++|+|||+ ++++++.|++|++++
T Consensus 284 ~~~~~~~~~~~~~~~~v~~~d~~t~~~~-~~~-~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D 347 (373)
T d2madh_ 284 LTSEQSAWKLHAAAKEVTSVTGLVGQTS-SQI-SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYD 347 (373)
T ss_pred ecCCCceEEeecCCCeEEEEECCCCcEE-EEe-cCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEE
Confidence 45566778999999988544 333 3456688999999998 457899999999943
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.71 E-value=1.3e-15 Score=139.34 Aligned_cols=299 Identities=8% Similarity=-0.045 Sum_probs=166.4
Q ss_pred eCCCCcEEEEe-----eCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCC
Q 010256 122 QSANSALYLLS-----TNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASND 196 (514)
Q Consensus 122 ~~~~~~~l~s~-----~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 196 (514)
|+++++.+++. ..++.|.+||..+++..........+ .++|+|||+.+.+.. ....
T Consensus 9 ~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~-----------------~~a~SpDg~~l~v~~--~~~~ 69 (355)
T d2bbkh_ 9 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-----------------NPVVADDGSFIAHAS--TVFS 69 (355)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-----------------EEEECTTSSCEEEEE--EEEE
T ss_pred eCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC-----------------ceEEcCCCCEEEEEe--CCCc
Confidence 36788888765 34668999999999877665543222 679999999872100 0000
Q ss_pred cccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe---cCCeEEEEeccCCCceeeeecc
Q 010256 197 SSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA---DDLRINLWNLEISNQSFNIVDV 273 (514)
Q Consensus 197 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~---~d~~i~iwd~~~~~~~~~~~~~ 273 (514)
....+..++.|++|| ....+.....................++|+|+++.++.+ .+..+.+|+..+.+....+ ..
T Consensus 70 ~~~~g~~d~~v~v~D-~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~ 147 (355)
T d2bbkh_ 70 RIARGERTDYVEVFD-PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRML-DV 147 (355)
T ss_dssp ETTEEEEEEEEEEEC-TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE-EC
T ss_pred cccccCCCCEEEEEE-CCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEE-ec
Confidence 011234578999999 433221111000000001112334568999999988765 4778999999866543222 11
Q ss_pred CCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCC
Q 010256 274 KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG 353 (514)
Q Consensus 274 ~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g 353 (514)
..............+.+++++..+++....++.+.+++...... .+...+....+++++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~ 206 (355)
T d2bbkh_ 148 PDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP---------------------EDEFLINHPAYSQKA 206 (355)
T ss_dssp CSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC---------------------TTSCBCSCCEEETTT
T ss_pred CCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc---------------------eecceeeeccccCCC
Confidence 00000000112234455555522222333344444444433221 111345556778888
Q ss_pred CEEEEEeC-CeEEEEEccCCCCce--eeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCC----------C
Q 010256 354 RHILSRDY-MTLKLWDINMDSGPV--ATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS----------N 420 (514)
Q Consensus 354 ~~l~~~~~-~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----------g 420 (514)
..++.+++ +.+++|++.. +... .....+..... ........ ...+++++++..++....+ .
T Consensus 207 ~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~--~~~~~p~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 280 (355)
T d2bbkh_ 207 GRLVWPTYTGKIHQIDLSS-GDAKFLPAVEALTEAER--ADGWRPGG---WQQVAYHRALDRIYLLVDQRDEWRHKTASR 280 (355)
T ss_dssp TEEEEEBTTSEEEEEECTT-SSCEECCCEESSCHHHH--HTTEEECS---SSCEEEETTTTEEEEEEEECCTTCTTSCEE
T ss_pred CeEEEecCCCeEEEEecCC-CcEEEEeccCCcccceE--eeeeeccc---eEEEEEeCCCCeEEEEeccCCceeecCCCC
Confidence 88877655 9999999986 3322 11221211100 00000011 1258899999988765543 3
Q ss_pred cEEEEecCCCceeeeeecCCCcceeEEEECCCCC--ceeecCCCCeEEEeeC
Q 010256 421 LFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRP--SRPLGSLSGVVRRVKG 470 (514)
Q Consensus 421 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~v~i~~~ 470 (514)
.|.+||..+++.. ..+.. ...+..++|+|||+ ++++++.|+.|++++.
T Consensus 281 ~v~v~d~~t~~~~-~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~ 330 (355)
T d2bbkh_ 281 FVVVLDAKTGERL-AKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDA 330 (355)
T ss_dssp EEEEEETTTCCEE-EEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEET
T ss_pred eEEEEeCCCCcEE-EEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEEC
Confidence 6999999987543 44443 34578999999998 4577888999999543
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.66 E-value=8.8e-15 Score=139.25 Aligned_cols=160 Identities=13% Similarity=0.148 Sum_probs=103.3
Q ss_pred EEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEE
Q 010256 40 AIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (514)
Q Consensus 40 ~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~ 119 (514)
.+.|.++++++.. .|+.+.+||+.+++... .+ -...+..|. ..|.++.
T Consensus 21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~----~~--------------~~~~~~~~~------------~~i~~~~ 68 (470)
T d2bgra1 21 SLRWISDHEYLYK--QENNILVFNAEYGNSSV----FL--------------ENSTFDEFG------------HSINDYS 68 (470)
T ss_dssp CCEECSSSEEEEE--SSSCEEEEETTTCCEEE----EE--------------CTTTTTTSS------------SCCCEEE
T ss_pred CCEeCCCCEEEEE--cCCcEEEEECCCCCEEE----EE--------------chhhhhhcc------------CccceeE
Confidence 5789999988875 47789999999887420 00 001234444 6799999
Q ss_pred EeeCCCCcEEEEeeC---------CCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcccccc
Q 010256 120 WCQSANSALYLLSTN---------DKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNF 190 (514)
Q Consensus 120 ~~~~~~~~~l~s~~~---------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~ 190 (514)
| ++||++|+.++. ++.+.+||+.+++...
T Consensus 69 ~--SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~---------------------------------------- 106 (470)
T d2bgra1 69 I--SPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT---------------------------------------- 106 (470)
T ss_dssp E--CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC----------------------------------------
T ss_pred E--CCCCCEEEEEECCcceeeeccCceEEEEECCCCcccc----------------------------------------
Confidence 9 678889988753 3456666666654211
Q ss_pred CCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeee
Q 010256 191 GCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNI 270 (514)
Q Consensus 191 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~ 270 (514)
+..+...+..+.|+|||+.+|...++.+++|+...+......
T Consensus 107 --------------------------------------l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~~t 148 (470)
T d2bgra1 107 --------------------------------------EERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRIT 148 (470)
T ss_dssp --------------------------------------SSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECC
T ss_pred --------------------------------------cccCCccccccccccCcceeeEeecccceEEECCCCceeeee
Confidence 144556788899999999999998889999998866543221
Q ss_pred eccCCCc-c---------cccCCceEEEEEecCCCcEEEEEecCCe-EEEEEc
Q 010256 271 VDVKPAN-M---------EDLTEVITSAEFHPTHCNMLAYSSSKGS-IRLIDM 312 (514)
Q Consensus 271 ~~~~~~~-~---------~~~~~~i~~v~~~p~~~~~l~~~~~dg~-i~~wd~ 312 (514)
....+.. + ....+....+.|+||| +.|+....|.. +..|.+
T Consensus 149 ~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDG-k~ia~~~~d~~~v~~~~~ 200 (470)
T d2bgra1 149 WTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEY 200 (470)
T ss_dssp SCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEE
T ss_pred eccCCCcccccccceeeeeeecCCccccEECCCC-CccceeEecCCcCceEEE
Confidence 1111000 0 0122334568899999 78887766533 444443
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.60 E-value=3.9e-14 Score=130.06 Aligned_cols=308 Identities=8% Similarity=-0.043 Sum_probs=170.9
Q ss_pred cccceEEEEEcCCCCeE--E-EecCCCe--EEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccc
Q 010256 34 EVDIISAIEFDKSGDHL--A-TGDRGGR--VVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (514)
Q Consensus 34 h~~~V~~~~~s~~g~~l--~-tg~~dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (514)
+......++..++++.. + +...+|. |.+||..+++ .+....++.
T Consensus 18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~-----------------------~~~~~~~~~-------- 66 (368)
T d1mdah_ 18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGV-----------------------TLGHSLGAF-------- 66 (368)
T ss_dssp CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTE-----------------------EEEEEEECT--------
T ss_pred cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCc-----------------------EEEEEeCCC--------
Confidence 34455556667888753 2 2445554 5566766655 334444443
Q ss_pred cccccceeEEEEeeCCCCcEEEEee----------CCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCcee
Q 010256 109 LEIEEKINKIRWCQSANSALYLLST----------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKS 178 (514)
Q Consensus 109 ~~~~~~v~~i~~~~~~~~~~l~s~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 178 (514)
...+.| +++|+.+++++ .|+.|++||..+++.......+...... ....+..++
T Consensus 67 ------~~~~a~--spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~--------~g~~p~~~a 130 (368)
T d1mdah_ 67 ------LSLAVA--GHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS--------VGPRVHIIG 130 (368)
T ss_dssp ------TCEEEE--CTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC--------BSCCTTSEE
T ss_pred ------CCcceE--CCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceec--------ccCCccceE
Confidence 235778 67888887754 4788999999999877766554222110 111223789
Q ss_pred eccCCCccccccCCCCCCcccCC-CCCCcEEeceeeccccccccccccccccccCccCeEEEEECCC-CCEEEEe-cCCe
Q 010256 179 YMANGGCGERNFGCASNDSSFPP-GGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSD-GETFISA-DDLR 255 (514)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~~~~-~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~ 255 (514)
|+|||+.+ +++ ..++.+.+|| +...+... .. ..+.... +.|. ...++.. .||+
T Consensus 131 ~SpDGk~l------------~va~~~~~~v~~~d-~~~~~~~~------~~-~~~~~~~----~~~~~~~~~v~~~~Dg~ 186 (368)
T d1mdah_ 131 NCASSACL------------LFFLFGSSAAAGLS-VPGASDDQ------LT-KSASCFH----IHPGAAATHYLGSCPAS 186 (368)
T ss_dssp ECTTSSCE------------EEEECSSSCEEEEE-ETTTEEEE------EE-ECSSCCC----CEEEETTEEECCCCTTS
T ss_pred ECCCCCEE------------EEEeCCCCeEEEEE-CCCCcEeE------Ee-eccCcce----EccCCCceEEEEcCCCC
Confidence 99999988 544 3578999999 43322211 11 1111110 1111 2233333 5666
Q ss_pred EEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccc
Q 010256 256 INLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRS 335 (514)
Q Consensus 256 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 335 (514)
+.+++............. .....+...+..+.+.+++ ..+. ...+.+.++++..+.... .......... ..
T Consensus 187 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g-~~~~--~~~~~v~~~~~~~~~~~~--~~~~~~~~~~--~~ 257 (368)
T d1mdah_ 187 LAASDLAAAPAAAGIVGA--QCTGAQNCSSQAAQANYPG-MLVW--AVASSILQGDIPAAGATM--KAAIDGNESG--RK 257 (368)
T ss_dssp CEEEECCSSCCCCEECCC--CSCTTSCBCSCCEEETTTT-EEEE--CBSSCCEEEECCSSCCEE--ECCCCSSCTH--HH
T ss_pred EEEEEecCCceeeeeeec--ccccccccceeecccccCc-EEEE--ecCCCEEEEeecCCceEE--Eeecccccce--ee
Confidence 666666544332221110 1223334445567777777 4444 345667777776654321 0011110000 00
Q ss_pred eeeccccceeEEEEecCCCEEEEEe---------C-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEE
Q 010256 336 FFTEIIASISDIKFARNGRHILSRD---------Y-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECC 405 (514)
Q Consensus 336 ~~~~~~~~i~~~~~s~~g~~l~~~~---------~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 405 (514)
...........++++|++..++... . ..|.+||..+ ++.+..+..... +..++
T Consensus 258 ~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t-~~~~~~~~~~~~----------------~~~~a 320 (368)
T d1mdah_ 258 ADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPISNGHD----------------SDAII 320 (368)
T ss_dssp HTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS-CCEEECCEEEEE----------------ECEEE
T ss_pred eeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCC-CcEeEEecCCCc----------------eeEEE
Confidence 0000112345588999988776531 1 3689999998 777777654432 22799
Q ss_pred EcCCCC-E-EEEEeCCCcEEEEecCCCceeeeeecC
Q 010256 406 LSGDGG-R-VATGSYSNLFRVFGCSEGSAESTTLEA 439 (514)
Q Consensus 406 ~s~~~~-~-l~s~~~dg~i~iwd~~~~~~~~~~~~~ 439 (514)
|+|||+ + ++++..|+.|++||..+++. ..+++.
T Consensus 321 ~spDG~~~ly~s~~~~~~v~v~D~~tgk~-~~~i~~ 355 (368)
T d1mdah_ 321 AAQDGASDNYANSAGTEVLDIYDAASDQD-QSSVEL 355 (368)
T ss_dssp ECCSSSCEEEEEETTTTEEEEEESSSCEE-EEECCC
T ss_pred ECCCCCEEEEEEeCCCCeEEEEECCCCCE-EEEEEC
Confidence 999997 3 45677889999999999854 345553
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.59 E-value=1e-14 Score=132.61 Aligned_cols=289 Identities=11% Similarity=0.033 Sum_probs=166.5
Q ss_pred EEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCCCCCcccCCCCCCcEE
Q 010256 129 YLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCASNDSSFPPGGVSSLR 208 (514)
Q Consensus 129 l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~ 208 (514)
+++++.+|.|++|++.+++....+. .|+|++.. ..+..+.+.+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~Ip------------------------Vfspd~~~-------------g~g~~~es~~ 56 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIP------------------------VFNVDSAT-------------GWGITNESKE 56 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEEC------------------------SSSBCTTT-------------CTTTSHHHHH
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEE------------------------eEcCCCCE-------------EEEECCccce
Confidence 5567899999999999988765532 35555543 2233322222
Q ss_pred eceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCceE
Q 010256 209 LPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVIT 286 (514)
Q Consensus 209 i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 286 (514)
+.. .. ... ..-..|........++|||++|... .+.+|.++|+++.+... ++. -.....+.
T Consensus 57 vl~----~~-----~~~-~~gd~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~-ii~------iP~g~gph 119 (441)
T d1qnia2 57 ILG----GD-----QQY-LNGDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDK-ITH------IPNVQAIH 119 (441)
T ss_dssp HHC----SS-----SCC-SCCCBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEE-EEE------CTTCCCEE
T ss_pred EEe----cc-----ccc-ccCcccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEee-EEe------cCCCCCcc
Confidence 211 00 000 0013455556666678999998776 79999999999765432 211 12356789
Q ss_pred EEEEecCCCcEEEEEecCCeE------------------EEEEcCCCccccccccceeccCCCCccceeeccccceeEEE
Q 010256 287 SAEFHPTHCNMLAYSSSKGSI------------------RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIK 348 (514)
Q Consensus 287 ~v~~~p~~~~~l~~~~~dg~i------------------~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (514)
.++|+|++...++.+..+..+ ..+|..+.+... .... .+....++
T Consensus 120 gi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~----qI~v-------------~~~p~~v~ 182 (441)
T d1qnia2 120 GLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAW----QVIV-------------DGNLDNTD 182 (441)
T ss_dssp EEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEE----EEEE-------------SSCCCCEE
T ss_pred ceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeE----EEec-------------CCCccceE
Confidence 999999984333433333333 334544433211 1111 13467788
Q ss_pred EecCCCEEEEEeC--C--------------eEEEEE--------------------------ccCCCCceeeeeeccccc
Q 010256 349 FARNGRHILSRDY--M--------------TLKLWD--------------------------INMDSGPVATFQVHEHLR 386 (514)
Q Consensus 349 ~s~~g~~l~~~~~--~--------------~i~iwd--------------------------~~~~~~~~~~~~~~~~~~ 386 (514)
|+|+|+++++.+. . .|.+.+ ... .+.+..+.....
T Consensus 183 ~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~-~~v~~~IPvgks-- 259 (441)
T d1qnia2 183 ADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGE-SEFTRYIPVPKN-- 259 (441)
T ss_dssp ECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSS-CSSEEEECCBSS--
T ss_pred ECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccC-CceEEEEeCCCC--
Confidence 8999988876532 1 122222 111 122222222211
Q ss_pred cccccccccCCccceeeEEEcCCCCEEE-EEeCCCcEEEEecCCCcee-------eeeecCCCc---ceeEEEECCCCCc
Q 010256 387 PKLCDLYENDSIFDKFECCLSGDGGRVA-TGSYSNLFRVFGCSEGSAE-------STTLEASKN---PMRRQVQTPSRPS 455 (514)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~-------~~~~~~~~~---~v~~~~~~~~~~~ 455 (514)
-..+.++|||++++ ++..+++|.+||+.+.... ...+.++.. ......|.+++..
T Consensus 260 --------------PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~ 325 (441)
T d1qnia2 260 --------------PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNA 325 (441)
T ss_dssp --------------CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEE
T ss_pred --------------ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceE
Confidence 12789999999875 5678999999998753211 011111111 1233578999999
Q ss_pred eeecCCCCeEEEee---------CCCCCc--cccC-CcccccccceEEEEEcCCCCEEEEEe
Q 010256 456 RPLGSLSGVVRRVK---------GADNSA--LDAN-GNAFDFSMKLLHLAWHPSENSIACAA 505 (514)
Q Consensus 456 l~s~s~d~~v~i~~---------~~~~~~--~~~~-~~~~~~~~~v~~~~~spd~~~l~~~~ 505 (514)
+.+.+.|..|...+ +..... ..+. ..+.+|...+.+..++|||++|++++
T Consensus 326 yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~ 387 (441)
T d1qnia2 326 YTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS 387 (441)
T ss_dssp EEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred EEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence 99999999988721 222111 0011 11246888888888999999999995
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.48 E-value=3e-12 Score=116.31 Aligned_cols=112 Identities=9% Similarity=0.035 Sum_probs=76.2
Q ss_pred eeEEEEecCCCEEEEEe--CCeEEEEEccCCC-------CceeeeeeccccccccccccccCCccceeeEEEcCCCCEEE
Q 010256 344 ISDIKFARNGRHILSRD--YMTLKLWDINMDS-------GPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVA 414 (514)
Q Consensus 344 i~~~~~s~~g~~l~~~~--~~~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 414 (514)
...+.++|||+++++++ +++|.|||+.+-. .....+.++... .......+|+++|+.+.
T Consensus 260 PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~------------glgplh~~fd~~g~~yt 327 (441)
T d1qnia2 260 PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPEL------------GLGPLHTTFDGRGNAYT 327 (441)
T ss_dssp CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBC------------CSCEEEEEECSSSEEEE
T ss_pred ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeeccc------------ccCcccceecCCceEEE
Confidence 57799999999988754 3999999986410 111111111111 11122468999999999
Q ss_pred EEeCCCcEEEEecCC---------Cceeeeee-----cCCCcceeEEEECCCCCceeec---CCCCeEEE
Q 010256 415 TGSYSNLFRVFGCSE---------GSAESTTL-----EASKNPMRRQVQTPSRPSRPLG---SLSGVVRR 467 (514)
Q Consensus 415 s~~~dg~i~iwd~~~---------~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~s~---s~d~~v~i 467 (514)
+...|..|..|++.. .......+ .+|...+....++|||+||+++ |.|+.+.+
T Consensus 328 s~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~~~~ 397 (441)
T d1qnia2 328 TLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDRFLPV 397 (441)
T ss_dssp EETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGGSCCC
T ss_pred cccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCccccccCcCC
Confidence 999999999999742 11122333 4777777788899999999999 66766555
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.47 E-value=8.1e-13 Score=125.43 Aligned_cols=116 Identities=6% Similarity=-0.056 Sum_probs=76.3
Q ss_pred cccccceEEEEEcCCCCeEEEecC---------CCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCc
Q 010256 32 VQEVDIISAIEFDKSGDHLATGDR---------GGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPE 102 (514)
Q Consensus 32 ~~h~~~V~~~~~s~~g~~l~tg~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 102 (514)
..|...|.+++|||||++||.++. ++.+.|||+.+++.. .+..|.
T Consensus 58 ~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~------------------------~l~~~~-- 111 (470)
T d2bgra1 58 DEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI------------------------TEERIP-- 111 (470)
T ss_dssp TTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC------------------------CSSCCC--
T ss_pred hhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCccc------------------------ccccCC--
Confidence 456778999999999999998753 567899999877642 344555
Q ss_pred cccccccccccceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCcc-ccCCccee--cccccCCceee
Q 010256 103 FDYLKSLEIEEKINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEK-AAGNGPIF--GSHVSAIPKSY 179 (514)
Q Consensus 103 ~~~~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~-~~~~~~v~--~~~~~~~~~~~ 179 (514)
+.+..+.| +|||+.+|.. .++.+.+|+..+++............. ......+. ........+.|
T Consensus 112 ----------~~~~~~~~--SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~w 178 (470)
T d2bgra1 112 ----------NNTQWVTW--SPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWW 178 (470)
T ss_dssp ----------TTEEEEEE--CSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEE
T ss_pred ----------cccccccc--ccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEE
Confidence 77899999 6788888885 567899999998875554332211000 00000000 00111236789
Q ss_pred ccCCCcc
Q 010256 180 MANGGCG 186 (514)
Q Consensus 180 ~~~~~~l 186 (514)
+|||+.+
T Consensus 179 SPDGk~i 185 (470)
T d2bgra1 179 SPNGTFL 185 (470)
T ss_dssp CTTSSEE
T ss_pred CCCCCcc
Confidence 9999988
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.46 E-value=3.6e-12 Score=116.66 Aligned_cols=264 Identities=9% Similarity=0.029 Sum_probs=148.8
Q ss_pred EEEEEcCCCCeEEEec----------CCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccc
Q 010256 39 SAIEFDKSGDHLATGD----------RGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKS 108 (514)
Q Consensus 39 ~~~~~s~~g~~l~tg~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 108 (514)
..++|+|||++|++.+ .|+.|.+||..+++.. ..+..+... .
T Consensus 68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~-----------------------~~i~~p~~~-----~ 119 (368)
T d1mdah_ 68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI-----------------------ADIELPDAP-----R 119 (368)
T ss_dssp CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE-----------------------EEEEETTSC-----S
T ss_pred CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEe-----------------------eeecCCccc-----e
Confidence 4689999999998754 4678999999877643 222211100 0
Q ss_pred cccccceeEEEEeeCCCCcEEEEee-CCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccc
Q 010256 109 LEIEEKINKIRWCQSANSALYLLST-NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGE 187 (514)
Q Consensus 109 ~~~~~~v~~i~~~~~~~~~~l~s~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 187 (514)
.........++| ++||++++++. .++.+.+||+.+++........... ...|+++..
T Consensus 120 ~~~g~~p~~~a~--SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~-------------------~~~~~~~~~- 177 (368)
T d1mdah_ 120 FSVGPRVHIIGN--CASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCF-------------------HIHPGAAAT- 177 (368)
T ss_dssp CCBSCCTTSEEE--CTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCC-------------------CCEEEETTE-
T ss_pred ecccCCccceEE--CCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcc-------------------eEccCCCce-
Confidence 000022345788 67888888775 6799999999999887766554211 112222211
Q ss_pred cccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEecCCeEEEEeccCCCce
Q 010256 188 RNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQS 267 (514)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~ 267 (514)
++..+.||.+..++ +............ .....+...+....+.+++..+.+ ..+.+.++++......
T Consensus 178 ----------~v~~~~Dg~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~-~~~~v~~~~~~~~~~~ 244 (368)
T d1mdah_ 178 ----------HYLGSCPASLAASD-LAAAPAAAGIVGA-QCTGAQNCSSQAAQANYPGMLVWA-VASSILQGDIPAAGAT 244 (368)
T ss_dssp ----------EECCCCTTSCEEEE-CCSSCCCCEECCC-CSCTTSCBCSCCEEETTTTEEEEC-BSSCCEEEECCSSCCE
T ss_pred ----------EEEEcCCCCEEEEE-ecCCceeeeeeec-ccccccccceeecccccCcEEEEe-cCCCEEEEeecCCceE
Confidence 14445556655555 2222111111111 112344455566778888765544 3455666666533322
Q ss_pred eee-eccCCC---cccccCCceEEEEEecCCCcEEEEEe-cC--------CeEEEEEcCCCccccccccceeccCCCCcc
Q 010256 268 FNI-VDVKPA---NMEDLTEVITSAEFHPTHCNMLAYSS-SK--------GSIRLIDMRQSALCDTHSKLFEEQEAPGTR 334 (514)
Q Consensus 268 ~~~-~~~~~~---~~~~~~~~i~~v~~~p~~~~~l~~~~-~d--------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 334 (514)
... ...... ...........++++|++ ..++... .+ ..|.+||..+++.. ..+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~-~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~----~~~~~------- 312 (368)
T d1mdah_ 245 MKAAIDGNESGRKADNFRSAGFQMVAKLKNT-DGIMILTVEHSRSCLAAAENTSSVTASVGQTS----GPISN------- 312 (368)
T ss_dssp EECCCCSSCTHHHHTTEEECSSSCEEEETTT-TEEEEEEEECSSCTTSCEEEEEEEESSSCCEE----ECCEE-------
T ss_pred EEeecccccceeeeeeecCCCceeEEEcCCC-CEEEEEecCCCceeecCCceEEEEECCCCcEe----EEecC-------
Confidence 110 000000 000011223457889998 4444433 22 35889999988753 22221
Q ss_pred ceeeccccceeEEEEecCCCE-EE-EEe-CCeEEEEEccCCCCceeeeeeccc
Q 010256 335 SFFTEIIASISDIKFARNGRH-IL-SRD-YMTLKLWDINMDSGPVATFQVHEH 384 (514)
Q Consensus 335 ~~~~~~~~~i~~~~~s~~g~~-l~-~~~-~~~i~iwd~~~~~~~~~~~~~~~~ 384 (514)
...+.+++|+|||+. ++ ++. ++.|++||..+ ++.+.++.....
T Consensus 313 ------~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~t-gk~~~~i~~g~~ 358 (368)
T d1mdah_ 313 ------GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS-DQDQSSVELDKG 358 (368)
T ss_dssp ------EEEECEEEECCSSSCEEEEEETTTTEEEEEESSS-CEEEEECCCCSC
T ss_pred ------CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCC-CCEEEEEECCCC
Confidence 246889999999973 43 443 48999999998 888888876544
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.26 E-value=6.3e-09 Score=94.06 Aligned_cols=184 Identities=8% Similarity=0.002 Sum_probs=105.9
Q ss_pred cCeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEE
Q 010256 234 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd 311 (514)
..+.++.|+|+|++++++ ....|.+|+..........-. ..........+.++|+|++..++++...+++|.+|+
T Consensus 145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~---~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~ 221 (365)
T d1jofa_ 145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGS---VDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYV 221 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEE---EECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccc---eeecCCCCceEEEEECCCCceEEEeccCCCEEEEEE
Confidence 347899999999988887 466888888764433221100 011223567899999999944445565689999999
Q ss_pred cCCCccccc-cccceec--cCCCCccceeeccccceeEEEEecCCCEEEEEe--C-----CeEEEEEccCCCCceeeeee
Q 010256 312 MRQSALCDT-HSKLFEE--QEAPGTRSFFTEIIASISDIKFARNGRHILSRD--Y-----MTLKLWDINMDSGPVATFQV 381 (514)
Q Consensus 312 ~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~-----~~i~iwd~~~~~~~~~~~~~ 381 (514)
+..+..... ....... ...+........+......+.++|+|++|+++. + ..|..|++...+........
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~ 301 (365)
T d1jofa_ 222 IDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFL 301 (365)
T ss_dssp ECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEE
T ss_pred ecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEe
Confidence 976543210 0011100 000000001112233466789999999998752 1 34777887753332221111
Q ss_pred ccccccccccccccCCccceeeEEEcC-CCCEEEEE-eCCCcEEEEecCCC
Q 010256 382 HEHLRPKLCDLYENDSIFDKFECCLSG-DGGRVATG-SYSNLFRVFGCSEG 430 (514)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~-~~dg~i~iwd~~~~ 430 (514)
...... ... -..++++| +|++|+.+ ..++.|.+|++...
T Consensus 302 ~~~~~~-------G~~---p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 302 SPTPTS-------GGH---SNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EECSSC-------CTT---CCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred eEEEcC-------CCC---ccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence 110000 000 11689998 89987766 57799999988654
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.21 E-value=7.4e-08 Score=83.37 Aligned_cols=158 Identities=9% Similarity=0.206 Sum_probs=107.3
Q ss_pred cCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEc
Q 010256 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~ 312 (514)
.....+++.+++.++++. ..+.+.+++.. ++. ...+ ....+......+++.+++ +++++....+.|.+||.
T Consensus 114 ~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~-~~~~-----g~~~~~~~~~~i~~d~~g-~i~v~d~~~~~V~~~d~ 185 (279)
T d1q7fa_ 114 QHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNV-LHKF-----GCSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNY 185 (279)
T ss_dssp SCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEE-----ECTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEET
T ss_pred cccceeccccCCcEEEEeeccceeeEeccC-Cce-eecc-----cccccccccceeeeccce-eEEeeeccccceeeeec
Confidence 345678888999888877 77788888865 332 2221 122345677889999998 88888888999999997
Q ss_pred CCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe--CCeEEEEEccCCCCceeeeeeccccccccc
Q 010256 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YMTLKLWDINMDSGPVATFQVHEHLRPKLC 390 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 390 (514)
.. +. +..+.. .+.......+++.++|+++++-. .+.|.+|+.. ++.+.++.......
T Consensus 186 ~G-~~----~~~~g~----------~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~--G~~~~~~~~~~~~~---- 244 (279)
T d1q7fa_ 186 EG-QY----LRQIGG----------EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD--GQLISALESKVKHA---- 244 (279)
T ss_dssp TC-CE----EEEESC----------TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT--SCEEEEEEESSCCS----
T ss_pred CC-ce----eeeecc----------cccccCCcccccccCCeEEEEECCCCcEEEEECCC--CCEEEEEeCCCCCC----
Confidence 54 32 222211 11224578899999999887743 2679999854 77666664432211
Q ss_pred cccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCC
Q 010256 391 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 391 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 430 (514)
....+++.+||++++ ++.+++|++|+....
T Consensus 245 ---------~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 245 ---------QCFDVALMDDGSVVL-ASKDYRLYIYRYVQL 274 (279)
T ss_dssp ---------CEEEEEEETTTEEEE-EETTTEEEEEECSCC
T ss_pred ---------CEeEEEEeCCCcEEE-EeCCCeEEEEEeeee
Confidence 123789999997655 457899999998754
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.19 E-value=1.4e-08 Score=91.80 Aligned_cols=260 Identities=10% Similarity=-0.020 Sum_probs=134.9
Q ss_pred cCeEEEEECCCCCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEe--cCCeEEEEE
Q 010256 234 YHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS--SKGSIRLID 311 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~--~dg~i~~wd 311 (514)
..+..|+|+|+++.|.++..+.+..|.+........... .........+.+++++...+++.. ..+.+..+.
T Consensus 40 ~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~------~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~ 113 (365)
T d1jofa_ 40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEAS------HPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANP 113 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEE------EECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEE
T ss_pred CCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEee------ecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeE
Confidence 345568999999999888666788887764433322210 011223445667777722222222 234555544
Q ss_pred cCCCccccccccceeccCCCCc----cceeeccccceeEEEEecCCCEEEEEeC--CeEEEEEccCCCCceeeeeecccc
Q 010256 312 MRQSALCDTHSKLFEEQEAPGT----RSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHL 385 (514)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~ 385 (514)
+...... ...+........ ..........+.++.|+|+|+++++.+. ..|.+|+....+.....-.....
T Consensus 114 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~- 189 (365)
T d1jofa_ 114 FYKFAGY---GNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP- 189 (365)
T ss_dssp ESSSCCE---EEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS-
T ss_pred ccCCCCc---ceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeec-
Confidence 4221100 000000000000 0000011134789999999999998754 68999987653332211110000
Q ss_pred ccccccccccCCccceeeEEEcCCCCEEEEE-eCCCcEEEEecCCCceee-ee---ec--------------CCCcceeE
Q 010256 386 RPKLCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSAES-TT---LE--------------ASKNPMRR 446 (514)
Q Consensus 386 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~-~~---~~--------------~~~~~v~~ 446 (514)
. ... ....++|+|+++++... ..++.|.+|++....... .. +. .+......
T Consensus 190 ~-------~g~---gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (365)
T d1jofa_ 190 D-------PGD---HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADV 259 (365)
T ss_dssp S-------TTC---CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEE
T ss_pred C-------CCC---ceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccc
Confidence 0 000 11279999999987654 467899999987653221 11 10 11223457
Q ss_pred EEECCCCCceeecCC--C----CeEEEeeCCCCC---ccccCCcccccccceEEEEEcC-CCCEEEEEe--cCcEEEEe
Q 010256 447 QVQTPSRPSRPLGSL--S----GVVRRVKGADNS---ALDANGNAFDFSMKLLHLAWHP-SENSIACAA--SNSLYMYY 513 (514)
Q Consensus 447 ~~~~~~~~~l~s~s~--d----~~v~i~~~~~~~---~~~~~~~~~~~~~~v~~~~~sp-d~~~l~~~~--~~~~~i~~ 513 (514)
+.++|+|++|+++.. + ..+...+-.... .................++++| +|++|+++. ++.+.+|.
T Consensus 260 i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~ 338 (365)
T d1jofa_ 260 CALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYR 338 (365)
T ss_dssp EEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred eEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEE
Confidence 889999999877632 1 123221111000 0000000011234567899998 899988775 67788874
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.18 E-value=1.2e-08 Score=89.76 Aligned_cols=238 Identities=13% Similarity=0.141 Sum_probs=145.7
Q ss_pred cceEEEEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccce
Q 010256 36 DIISAIEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKI 115 (514)
Q Consensus 36 ~~V~~~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v 115 (514)
..+..++++|||+++++...+++|..|+..... ..+.... ..+
T Consensus 28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~-------------------------~~~~~~~------------~~~ 70 (302)
T d2p4oa1 28 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-------------------------QIHATVE------------GKV 70 (302)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-------------------------EEEEECS------------SEE
T ss_pred CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCE-------------------------EEEEcCC------------CCc
Confidence 468899999999999999889988777744221 1122222 568
Q ss_pred eEEEEeeCCCCcEEEEeeCCCeEEEEEcCccE--EEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccCCC
Q 010256 116 NKIRWCQSANSALYLLSTNDKTIKLWKVQEKK--VKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFGCA 193 (514)
Q Consensus 116 ~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (514)
.+++| .++|+++++...++.+..|+..... ......
T Consensus 71 ~gla~--~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------- 108 (302)
T d2p4oa1 71 SGLAF--TSNGDLVATGWNADSIPVVSLVKSDGTVETLLT---------------------------------------- 108 (302)
T ss_dssp EEEEE--CTTSCEEEEEECTTSCEEEEEECTTSCEEEEEE----------------------------------------
T ss_pred ceEEE--cCCCCeEEEecCCceEEEEEecccccceeeccc----------------------------------------
Confidence 99999 6788888888778888777654321 100000
Q ss_pred CCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeec
Q 010256 194 SNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVD 272 (514)
Q Consensus 194 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~ 272 (514)
.......+.+++.++++++++- .++.+..++............
T Consensus 109 ------------------------------------~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~ 152 (302)
T d2p4oa1 109 ------------------------------------LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEH 152 (302)
T ss_dssp ------------------------------------CTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred ------------------------------------cCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecC
Confidence 1112446788999999888877 788888888775433222211
Q ss_pred c--CCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEe
Q 010256 273 V--KPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFA 350 (514)
Q Consensus 273 ~--~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 350 (514)
. .+............+.+..+ .++++.+..+.|..+++........ ...+. .......++++
T Consensus 153 ~~~~~~~~~~~~~~~ngi~~~~~--~l~~~~~~~~~i~~~~~~~~~~~~~-~~~~~-------------~~~~pdgia~d 216 (302)
T d2p4oa1 153 PMLARSNSESVFPAANGLKRFGN--FLYVSNTEKMLLLRIPVDSTDKPGE-PEIFV-------------EQTNIDDFAFD 216 (302)
T ss_dssp GGGSCSSTTCCSCSEEEEEEETT--EEEEEETTTTEEEEEEBCTTSCBCC-CEEEE-------------ESCCCSSEEEB
T ss_pred CccceeeccCcccccccccccCC--ceeeecCCCCeEEeccccccccccc-ccccc-------------CCCCCcceEEC
Confidence 1 11112222344567777653 5777788889999888876433211 11111 11346779999
Q ss_pred cCCCEEEEEe-CCeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEE---cCCCCEEEEEeCC
Q 010256 351 RNGRHILSRD-YMTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL---SGDGGRVATGSYS 419 (514)
Q Consensus 351 ~~g~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---s~~~~~l~s~~~d 419 (514)
++|.++++.. +++|..++.. ++........... ...++++| ++|++.|+.++..
T Consensus 217 ~dG~l~va~~~~~~V~~i~p~--G~~~~~~~~~~~~-------------~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 217 VEGNLYGATHIYNSVVRIAPD--RSTTIIAQAEQGV-------------IGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp TTCCEEEECBTTCCEEEECTT--CCEEEEECGGGTC-------------TTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCCCEEEEEcCCCcEEEECCC--CCEEEEEecCCCC-------------CCceEEEEcCCCCCCCEEEEECCC
Confidence 9999877754 4888888665 4433222222211 11348999 6788887765543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.14 E-value=2.8e-08 Score=87.27 Aligned_cols=199 Identities=12% Similarity=0.041 Sum_probs=118.1
Q ss_pred cCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEc
Q 010256 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~ 312 (514)
..+.+++|+++|+++++. .++.+..|+..........+ ...........+.+.+++ +++++.+.++.+..+|.
T Consensus 68 ~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~n~i~~~~~g-~~~v~~~~~~~i~~~~~ 141 (302)
T d2p4oa1 68 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL-----LTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDV 141 (302)
T ss_dssp SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE-----EECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEET
T ss_pred CCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec-----cccCCccccceeEEccCC-CEEeeccccccceeeec
Confidence 457889999999998888 78888888776443322211 011234557899999998 88888888899988888
Q ss_pred CCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE-e-CCeEEEEEccCCCCceeeeeeccccccccc
Q 010256 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-D-YMTLKLWDINMDSGPVATFQVHEHLRPKLC 390 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 390 (514)
..+... +........ .............+.++ +..++.+ . .+.|..++... .............
T Consensus 142 ~~~~~~---~~~~~~~~~---~~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~----- 207 (302)
T d2p4oa1 142 VQPSGS---IWLEHPMLA---RSNSESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDS-TDKPGEPEIFVEQ----- 207 (302)
T ss_dssp TTTEEE---EEEECGGGS---CSSTTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBCT-TSCBCCCEEEEES-----
T ss_pred cCCcce---eEecCCccc---eeeccCccccccccccc--CCceeeecCCCCeEEeccccc-cccccccccccCC-----
Confidence 776421 000000000 00001111234556555 4455554 3 38888888775 2222111110000
Q ss_pred cccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEE---CCCCCceeecC
Q 010256 391 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQ---TPSRPSRPLGS 460 (514)
Q Consensus 391 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~l~s~s 460 (514)
.. ...++++++|+++++...+++|..++..................+.++| .+|++.|..++
T Consensus 208 -----~~---pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt 272 (302)
T d2p4oa1 208 -----TN---IDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT 272 (302)
T ss_dssp -----CC---CSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred -----CC---CcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEEC
Confidence 00 1179999999988888888999999876432222333444455778999 66777665443
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=7e-08 Score=89.82 Aligned_cols=370 Identities=11% Similarity=0.042 Sum_probs=176.9
Q ss_pred EEEcCCCCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEEE
Q 010256 41 IEFDKSGDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRW 120 (514)
Q Consensus 41 ~~~s~~g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~~ 120 (514)
..|.+++.++.. ..+|.|.+||+.+++.. .+ +..+. + . .-.+....|
T Consensus 22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~---------------------~l--~~~~~--~---~----~~~~~~~~~ 68 (465)
T d1xfda1 22 AKWISDTEFIYR-EQKGTVRLWNVETNTST---------------------VL--IEGKK--I---E----SLRAIRYEI 68 (465)
T ss_dssp CCBSSSSCBCCC-CSSSCEEEBCGGGCCCE---------------------EE--ECTTT--T---T----TTTCSEEEE
T ss_pred CEEeCCCcEEEE-eCCCcEEEEECCCCCEE---------------------EE--EcCcc--c---c----ccccceeEE
Confidence 358888877654 56788999999877632 11 11111 0 0 023556667
Q ss_pred eeCCCCcEEEEee---------CCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 121 CQSANSALYLLST---------NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 121 ~~~~~~~~l~s~~---------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
++|+++++... ..+.+.++|+.++....+....... +.+ ....|||||+.+.....
T Consensus 69 --SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~------~~l-------~~~~wSPDG~~iafv~~ 133 (465)
T d1xfda1 69 --SPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSN------AKL-------QYAGWGPKGQQLIFIFE 133 (465)
T ss_dssp --CTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCS------CCC-------SBCCBCSSTTCEEEEET
T ss_pred --CCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCc------ccc-------ceeeeccCCceEEEEec
Confidence 67888877653 3578889999988765543332111 111 14689999998732211
Q ss_pred CCCCCcccCCCCCCcEEeceeecccccc--ccccccccccccCccCeEEEEECCCCCEEEEe--cCCeEEEEeccCCCce
Q 010256 192 CASNDSSFPPGGVSSLRLPVVVTSQETN--LVAGCRRIYAHAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQS 267 (514)
Q Consensus 192 ~~~~~~~~~~~~~~~i~i~~~~~~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~ 267 (514)
. ..++........+++-. ..... ..+..-..+...-.+.-.++.|||||+.||.. ++..|..+.+......
T Consensus 134 ~--nl~~~~~~~~~~~~lt~---~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~ 208 (465)
T d1xfda1 134 N--NIYYCAHVGKQAIRVVS---TGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGS 208 (465)
T ss_dssp T--EEEEESSSSSCCEEEEC---CCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSS
T ss_pred c--eEEEEecCCCceEEEec---ccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeeccccccc
Confidence 0 00111111111122100 00000 00000000000001122578899999999987 6666666655321100
Q ss_pred eeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEE
Q 010256 268 FNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDI 347 (514)
Q Consensus 268 ~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 347 (514)
....+..+.+..-| .. .....+.++|+.++.... ...... ........+..+
T Consensus 209 -------------~~p~~~~~~Yp~~G-~~----np~~~l~v~d~~~~~~~~---~~~~~~-------~~~~~~~y~~~~ 260 (465)
T d1xfda1 209 -------------IYPTVKPYHYPKAG-SE----NPSISLHVIGLNGPTHDL---EMMPPD-------DPRMREYYITMV 260 (465)
T ss_dssp -------------SSCCCEEEECCBTT-SC----CCEEEEEEEESSSSCCCE---ECCCCC-------CGGGSSEEEEEE
T ss_pred -------------ccceeeeeeccccC-CC----CCceeEEEEecCCCcEEE---EEeccC-------cCccccceeeee
Confidence 11222333332222 10 111257788886654321 000000 011112357889
Q ss_pred EEecCCCEEEEE-e---C-CeEEEEEccCCCCceeeeeeccc-cccccccccccCCccceeeEEEcCCCCEEE---EEeC
Q 010256 348 KFARNGRHILSR-D---Y-MTLKLWDINMDSGPVATFQVHEH-LRPKLCDLYENDSIFDKFECCLSGDGGRVA---TGSY 418 (514)
Q Consensus 348 ~~s~~g~~l~~~-~---~-~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~---s~~~ 418 (514)
.|+|++++++.. . + ..+.++|..+ ++....+..... .+. .. -....|++||+.++ ....
T Consensus 261 ~W~~d~~~~~~~~nR~q~~~~i~~~d~~t-g~~~~~~~e~~~~wv~----~~-------~~~p~~~~dg~~~~fi~~se~ 328 (465)
T d1xfda1 261 KWATSTKVAVTWLNRAQNVSILTLCDATT-GVCTKKHEDESEAWLH----RQ-------NEEPVFSKDGRKFFFIRAIPQ 328 (465)
T ss_dssp EESSSSEEEEEEEETTSCEEEEEEEETTT-CCEEEEEEEECSSCCC----CC-------CCCCEECTTSCSEEEEEEECC
T ss_pred EEcCCCeEEEEEEccccccceEEEEcCCC-CcEEEEEEEcCCceEe----cc-------CCceeEccCCCeeEEEEeeee
Confidence 999999877763 2 2 4678888886 655444433221 110 00 01467999998543 2223
Q ss_pred CC--cEEEEecCC-----CceeeeeecCCCcceeEE-EECCCCCce-eecCCC----CeEEE--eeCCCCCccccCCccc
Q 010256 419 SN--LFRVFGCSE-----GSAESTTLEASKNPMRRQ-VQTPSRPSR-PLGSLS----GVVRR--VKGADNSALDANGNAF 483 (514)
Q Consensus 419 dg--~i~iwd~~~-----~~~~~~~~~~~~~~v~~~-~~~~~~~~l-~s~s~d----~~v~i--~~~~~~~~~~~~~~~~ 483 (514)
+| .++...+.. .......+....-.|..+ .+..+++.+ .++..+ ..+.- ++|.... .......
T Consensus 329 ~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~--~~lt~~~ 406 (465)
T d1xfda1 329 GGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNR--QCLSCDL 406 (465)
T ss_dssp SSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCC--BCSSTTS
T ss_pred cccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcc--eeecccc
Confidence 33 344443221 111112233333345554 577776654 333332 22333 3333222 1111112
Q ss_pred ccccceEEEEEcCCCCEEEEEe
Q 010256 484 DFSMKLLHLAWHPSENSIACAA 505 (514)
Q Consensus 484 ~~~~~v~~~~~spd~~~l~~~~ 505 (514)
.......++.|||++++++...
T Consensus 407 ~~~~~~~~~~~S~~~~y~v~~~ 428 (465)
T d1xfda1 407 VENCTYFSASFSHSMDFFLLKC 428 (465)
T ss_dssp SSSCCCCEEEECTTSSEEEEEC
T ss_pred CCCCCEEEEEECCCCCEEEEEe
Confidence 2345678999999999988443
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.07 E-value=6e-08 Score=83.55 Aligned_cols=181 Identities=14% Similarity=0.163 Sum_probs=105.5
Q ss_pred ccCccCeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010256 230 HAHDYHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 307 (514)
Q Consensus 230 ~~h~~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i 307 (514)
..+........|+|+|+.++.. .++...++.......... .............+++++...+++...++..
T Consensus 79 ~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 151 (269)
T d2hqsa1 79 ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-------QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRP 151 (269)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-------ECCCCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred eeeecccccceecCCCCeeeEeeecCCccceeecccccccce-------eeeeccccccccccccccccceecccccCCc
Confidence 4556777889999999998875 344433333332222111 1222344445667777774555555556654
Q ss_pred --EEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-C-CeEEEEEccCCCCceeeeeecc
Q 010256 308 --RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATFQVHE 383 (514)
Q Consensus 308 --~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~-~~i~iwd~~~~~~~~~~~~~~~ 383 (514)
.+.++..+... .+...........|+|+++.++..+ + +...+|............. ..
T Consensus 152 ~i~~~~~~~~~~~-----------------~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~ 213 (269)
T d2hqsa1 152 QVYKVNINGGAPQ-----------------RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLS-ST 213 (269)
T ss_dssp EEEEEETTSSCCE-----------------ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECC-CS
T ss_pred eEeeeecccccce-----------------eeecccccccccccccccceeEEEeecCCceeeeEeecccccceEee-cC
Confidence 44454443321 0111224567789999999998753 3 5556665554233333222 22
Q ss_pred ccccccccccccCCccceeeEEEcCCCCEEEEEeC---CCcEEEEecCCCceeeeeecCCCcceeEEEECCC
Q 010256 384 HLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSY---SNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPS 452 (514)
Q Consensus 384 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 452 (514)
.. .....|||||+.|+..+. ...|+++++..+.. ..+......+...+|+|-
T Consensus 214 ~~---------------~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~--~~lt~~~g~~~~p~WSP~ 268 (269)
T d2hqsa1 214 FL---------------DETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK--ARLPATDGQVKFPAWSPY 268 (269)
T ss_dssp SS---------------CEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE--EECCCSSSEEEEEEECCC
T ss_pred cc---------------ccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE--EEEeCCCCcEEeEEeCCC
Confidence 11 126789999999875543 34688999986532 445555667778888884
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.03 E-value=1.2e-07 Score=80.98 Aligned_cols=232 Identities=6% Similarity=-0.033 Sum_probs=140.2
Q ss_pred cCeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEE
Q 010256 234 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd 311 (514)
....+++++++|+.+++. ..+.+..++......... ... .......+++++++ +++++....+.+++++
T Consensus 14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~-------~~~-~~~~p~gvav~~~g-~i~v~d~~~~~i~~~~ 84 (260)
T d1rwia_ 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-------PFN-GLYQPQGLAVDGAG-TVYVTDFNNRVVTLAA 84 (260)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEEC-------CCC-SCCSCCCEEECTTC-CEEEEETTTEEEEECT
T ss_pred CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEe-------ccC-CccCceEEEEcCCC-CEEEeeeeeceeeeee
Confidence 345799999999977765 567888877664332211 111 12345788999998 7777776666676665
Q ss_pred cCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccccccc
Q 010256 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLC 390 (514)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 390 (514)
-.+.... ..... .....++++.++++++++-.. ..+..++... ......... ...
T Consensus 85 ~~~~~~~----~~~~~-------------~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~--~~~~~~~~~-~~~---- 140 (260)
T d1rwia_ 85 GSNNQTV----LPFDG-------------LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS--KTQTVLPFT-GLN---- 140 (260)
T ss_dssp TCSCCEE----CCCCS-------------CCSEEEEEECTTCCEEEEEGGGTEEEEECTTC--SSCEECCCC-SCC----
T ss_pred eccceee----eeeee-------------eeecccccccccceeEeecccccccccccccc--ceeeeeeec-ccC----
Confidence 4443321 11111 135688999999988776543 6666666543 222221111 100
Q ss_pred cccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEEeeC
Q 010256 391 DLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRRVKG 470 (514)
Q Consensus 391 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i~~~ 470 (514)
....++++++|+++++...++.|..++....... ............+++.++++++++....+.|..+..
T Consensus 141 ---------~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~-~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~ 210 (260)
T d1rwia_ 141 ---------DPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV-VLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLA 210 (260)
T ss_dssp ---------SCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEE-ECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECT
T ss_pred ---------CcceeeecCCCCEeeeccccccccccccccceee-eeeccccCCCccceeeeeeeeeeeecCCCEEEEEeC
Confidence 0127899999998888888889999998754332 222244455678999999999888888887766322
Q ss_pred -CCCCccccCCcccccccceEEEEEcCCCCEEEEEe-cCcEEEE
Q 010256 471 -ADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA-SNSLYMY 512 (514)
Q Consensus 471 -~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~-~~~~~i~ 512 (514)
.... ..... ..-.....|+++++|+++++.. .+.+..+
T Consensus 211 ~~~~~-~~~~~---~~~~~P~~i~~d~~g~l~vad~~~~rI~~i 250 (260)
T d1rwia_ 211 GSTTS-TVLPF---TGLNTPLAVAVDSDRTVYVADRGNDRVVKL 250 (260)
T ss_dssp TCSCC-EECCC---CSCCCEEEEEECTTCCEEEEEGGGTEEEEE
T ss_pred CCCeE-EEEcc---CCCCCeEEEEEeCCCCEEEEECCCCEEEEE
Confidence 1111 01111 1124568999999998766654 4444443
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.98 E-value=7.3e-07 Score=78.19 Aligned_cols=122 Identities=7% Similarity=0.056 Sum_probs=77.2
Q ss_pred ceEEEEEecCCC----cEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE
Q 010256 284 VITSAEFHPTHC----NMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR 359 (514)
Q Consensus 284 ~i~~v~~~p~~~----~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 359 (514)
..+.++|+|++. .++++-+..+.|..||+........ .+.+.... .........+++..+|++.++.
T Consensus 173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~-~~~~~~~~--------~~~~~~pdGiavD~~GnlyVa~ 243 (314)
T d1pjxa_ 173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN-KKVWGHIP--------GTHEGGADGMDFDEDNNLLVAN 243 (314)
T ss_dssp SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE-EEEEEECC--------CCSSCEEEEEEEBTTCCEEEEE
T ss_pred eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccce-eeEEEEcc--------ccccccceeeEEecCCcEEEEE
Confidence 357889998762 2555556788999998764322111 01111000 0011235679999999988776
Q ss_pred eC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCC-EEEEEeCCCcEEEEecCCC
Q 010256 360 DY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-RVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 360 ~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~ 430 (514)
.. +.|.+||.+. ++.+..+..+... ..+++|.||++ ++++.+.+|+|..+++...
T Consensus 244 ~~~g~I~~~dp~~-g~~~~~i~~p~~~---------------~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~ 300 (314)
T d1pjxa_ 244 WGSSHIEVFGPDG-GQPKMRIRCPFEK---------------PSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp ETTTEEEEECTTC-BSCSEEEECSSSC---------------EEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred cCCCEEEEEeCCC-CEEEEEEECCCCC---------------EEEEEEeCCCCEEEEEECCCCcEEEEECCCC
Confidence 44 8999999875 5555555543322 23799999997 4566677888888887654
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.97 E-value=8.3e-07 Score=76.55 Aligned_cols=240 Identities=11% Similarity=0.128 Sum_probs=148.2
Q ss_pred CeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEE-ecCCeEEEEEc
Q 010256 235 HINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS-SSKGSIRLIDM 312 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~-~~dg~i~~wd~ 312 (514)
....++++++++++++- ....|++||.+ ++....+ ... ..-.+.......+++.++....+++. +.++.|..++.
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~-~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 100 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQF-GEC-GKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ 100 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEE-CCB-SSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEe-ccc-CCCcccccccccccccccccccceeccCCccccccccc
Confidence 46799999999988886 78999999976 3332221 110 01112233456677766653444433 34567777775
Q ss_pred CCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeecccccccccc
Q 010256 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCD 391 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 391 (514)
. +.. ...+... .......+++.++|+++++... +.+.+++.. ++.+..+.......
T Consensus 101 ~-g~~----~~~~~~~-----------~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~--g~~~~~~g~~~~~~----- 157 (279)
T d1q7fa_ 101 Y-GQF----VRKFGAT-----------ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN--GNVLHKFGCSKHLE----- 157 (279)
T ss_dssp T-SCE----EEEECTT-----------TCSCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEEECTTTCS-----
T ss_pred c-ccc----eeecCCC-----------cccccceeccccCCcEEEEeeccceeeEeccC--Cceeeccccccccc-----
Confidence 4 332 1222111 1245778999999998887655 778887765 66666553322211
Q ss_pred ccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee--cCCCcceeEEEECCCCCceeecCC-CCeEEEe
Q 010256 392 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTL--EASKNPMRRQVQTPSRPSRPLGSL-SGVVRRV 468 (514)
Q Consensus 392 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~s~-d~~v~i~ 468 (514)
....+++.++++++++....+.|++||... +. ..++ .+.......+++.++++++++-+. ++.|.+.
T Consensus 158 --------~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G-~~-~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f 227 (279)
T d1q7fa_ 158 --------FPNGVVVNDKQEIFISDNRAHCVKVFNYEG-QY-LRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIF 227 (279)
T ss_dssp --------SEEEEEECSSSEEEEEEGGGTEEEEEETTC-CE-EEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEE
T ss_pred --------ccceeeeccceeEEeeeccccceeeeecCC-ce-eeeecccccccCCcccccccCCeEEEEECCCCcEEEEE
Confidence 123788999999988888889999999763 23 2333 345566788999999998877544 4457663
Q ss_pred eC-CCCCccccCCcccccccceEEEEEcCCCCEEEEEecCcEEEEe
Q 010256 469 KG-ADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYY 513 (514)
Q Consensus 469 ~~-~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~~~~~~i~~ 513 (514)
+. .++.. .+.. .........+++.|||+++++...+.+.+|.
T Consensus 228 ~~~G~~~~-~~~~--~~~~~~p~~vav~~dG~l~V~~~n~~v~~fr 270 (279)
T d1q7fa_ 228 TQDGQLIS-ALES--KVKHAQCFDVALMDDGSVVLASKDYRLYIYR 270 (279)
T ss_dssp CTTSCEEE-EEEE--SSCCSCEEEEEEETTTEEEEEETTTEEEEEE
T ss_pred CCCCCEEE-EEeC--CCCCCCEeEEEEeCCCcEEEEeCCCeEEEEE
Confidence 21 11110 0100 0112356889999999877776677787773
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.96 E-value=3.1e-07 Score=78.41 Aligned_cols=153 Identities=6% Similarity=0.027 Sum_probs=97.5
Q ss_pred cCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEc
Q 010256 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDM 312 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~ 312 (514)
....+++++++++++++- ....+..++......... ... .......++++|++ +++++...++.|..+|.
T Consensus 98 ~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~-------~~~-~~~~p~~i~~~~~g-~~~v~~~~~~~i~~~d~ 168 (260)
T d1rwia_ 98 NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL-------PFT-GLNDPDGVAVDNSG-NVYVTDTDNNRVVKLEA 168 (260)
T ss_dssp CSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEEC-------CCC-SCCSCCEEEECTTC-CEEEEEGGGTEEEEECT
T ss_pred eecccccccccceeEeeccccccccccccccceeeee-------eec-ccCCcceeeecCCC-CEeeecccccccccccc
Confidence 346789999999888776 677777777653322211 111 12345789999998 78888888899999998
Q ss_pred CCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeecccccccccc
Q 010256 313 RQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCD 391 (514)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 391 (514)
...... .+.. ........+++.++|.++++... +.|..++... .....+... ..
T Consensus 169 ~~~~~~-----~~~~-----------~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~--~~~~~~~~~-~~------ 223 (260)
T d1rwia_ 169 ESNNQV-----VLPF-----------TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS--TTSTVLPFT-GL------ 223 (260)
T ss_dssp TTCCEE-----ECCC-----------SSCCSEEEEEECTTCCEEEEETTTTEEEEECTTC--SCCEECCCC-SC------
T ss_pred ccceee-----eeec-----------cccCCCccceeeeeeeeeeeecCCCEEEEEeCCC--CeEEEEccC-CC------
Confidence 764321 1111 11135678999999988777654 7888777653 222222111 10
Q ss_pred ccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEec
Q 010256 392 LYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGC 427 (514)
Q Consensus 392 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 427 (514)
.....++++++|+++++-..+++|+.++.
T Consensus 224 -------~~P~~i~~d~~g~l~vad~~~~rI~~i~~ 252 (260)
T d1rwia_ 224 -------NTPLAVAVDSDRTVYVADRGNDRVVKLTS 252 (260)
T ss_dssp -------CCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred -------CCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence 11237999999998877666776665543
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.91 E-value=1.4e-07 Score=81.25 Aligned_cols=215 Identities=14% Similarity=0.105 Sum_probs=119.6
Q ss_pred CccCeEEEEECCCCCEEEEe--c--CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEe-cCCe
Q 010256 232 HDYHINSISNNSDGETFISA--D--DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGS 306 (514)
Q Consensus 232 h~~~v~~~~~~~~~~~l~s~--~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg~ 306 (514)
+...+...+|||||+.||-. . ...+.+.+....... .+..+........|+|+| ..++... .++.
T Consensus 37 ~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~spdg-~~i~~~~~~~~~ 106 (269)
T d2hqsa1 37 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR---------QVASFPRHNGAPAFSPDG-SKLAFALSKTGS 106 (269)
T ss_dssp ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE---------EEECCSSCEEEEEECTTS-SEEEEEECTTSS
T ss_pred CCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee---------EEeeeecccccceecCCC-CeeeEeeecCCc
Confidence 34667889999999999865 2 334666666544322 233456778889999999 5555444 4444
Q ss_pred EEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe--CC--eEEEEEccCCCCceeeeeec
Q 010256 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD--YM--TLKLWDINMDSGPVATFQVH 382 (514)
Q Consensus 307 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~~--~i~iwd~~~~~~~~~~~~~~ 382 (514)
..++......... ... ...........+++++..++... ++ .|.+.++.. .....+...
T Consensus 107 ~~~~~~~~~~~~~--~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~--~~~~~~~~~ 169 (269)
T d2hqsa1 107 LNLYVMDLASGQI--RQV-------------TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING--GAPQRITWE 169 (269)
T ss_dssp CEEEEEETTTCCE--EEC-------------CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS--SCCEECCCS
T ss_pred cceeecccccccc--eee-------------eeccccccccccccccccceecccccCCceEeeeeccc--ccceeeecc
Confidence 4433332221100 000 11113345566777777666532 24 455555543 222222222
Q ss_pred cccccccccccccCCccceeeEEEcCCCCEEEEEeCC-CcEE--EEecCCCceeeeeecCCCcceeEEEECCCCCceeec
Q 010256 383 EHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYS-NLFR--VFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLG 459 (514)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-g~i~--iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 459 (514)
... .....|+|+++.++..+.+ +... +.+...+ . ..+..+........|+|||+.|+..
T Consensus 170 ~~~---------------~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~--~-~~~~~~~~~~~~p~~SPDG~~i~f~ 231 (269)
T d2hqsa1 170 GSQ---------------NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG--G-VQVLSSTFLDETPSLAPNGTMVIYS 231 (269)
T ss_dssp SSE---------------EEEEEECTTSSEEEEEEECSSCEEEEEEETTTC--C-EEECCCSSSCEEEEECTTSSEEEEE
T ss_pred ccc---------------ccccccccccceeEEEeecCCceeeeEeecccc--c-ceEeecCccccceEECCCCCEEEEE
Confidence 211 2267899999998876544 3444 4454443 2 2333445556778999999998766
Q ss_pred CCCC---eEEE--eeCCCCCccccCCcccccccceEEEEEcCC
Q 010256 460 SLSG---VVRR--VKGADNSALDANGNAFDFSMKLLHLAWHPS 497 (514)
Q Consensus 460 s~d~---~v~i--~~~~~~~~~~~~~~~~~~~~~v~~~~~spd 497 (514)
+..+ .+.+ ++|.... ......+.+...+|||-
T Consensus 232 s~~~~~~~l~~~~~dg~~~~------~lt~~~g~~~~p~WSP~ 268 (269)
T d2hqsa1 232 SSQGMGSVLNLVSTDGRFKA------RLPATDGQVKFPAWSPY 268 (269)
T ss_dssp EEETTEEEEEEEETTSCCEE------ECCCSSSEEEEEEECCC
T ss_pred EcCCCCcEEEEEECCCCCEE------EEeCCCCcEEeEEeCCC
Confidence 5432 3333 3333222 12224567888999984
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.89 E-value=1.6e-06 Score=76.30 Aligned_cols=233 Identities=12% Similarity=0.074 Sum_probs=137.9
Q ss_pred CeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEec----CCeEEE
Q 010256 235 HINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSS----KGSIRL 309 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~----dg~i~~ 309 (514)
.+..++|+++|+++++- ..+.|..|+.+....... ..........++++++| +++++... .+.+..
T Consensus 41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~--------~~~~~~~p~gla~~~dG-~l~va~~~~~~~~~~i~~ 111 (319)
T d2dg1a1 41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP--------FVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFA 111 (319)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE--------EECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEE
T ss_pred CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEE--------EeCCCCCeeEEEECCCC-CEEEEecCCCccceeEEE
Confidence 45689999999987777 899999999875433221 12234567899999999 77776543 233444
Q ss_pred EEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-----CeEEEEEccCCCCceeeeeeccc
Q 010256 310 IDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-----MTLKLWDINMDSGPVATFQVHEH 384 (514)
Q Consensus 310 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-----~~i~iwd~~~~~~~~~~~~~~~~ 384 (514)
.+....... ....... -......+++.++|++.++... ..-.+|-+...++.+..+...-.
T Consensus 112 ~~~~~~~~~----~~~~~~~----------~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~ 177 (319)
T d2dg1a1 112 ATENGDNLQ----DIIEDLS----------TAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNIS 177 (319)
T ss_dssp ECTTSCSCE----EEECSSS----------SCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEES
T ss_pred EcCCCceee----eeccCCC----------cccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccc
Confidence 454443321 1111000 0134778999999998776321 12234444332444443322211
Q ss_pred cccccccccccCCccceeeEEEcCCCCEEE-EEeCCCcEEEEecCCCceeeeee-------cCCCcceeEEEECCCCCce
Q 010256 385 LRPKLCDLYENDSIFDKFECCLSGDGGRVA-TGSYSNLFRVFGCSEGSAESTTL-------EASKNPMRRQVQTPSRPSR 456 (514)
Q Consensus 385 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l 456 (514)
. -..++|+||++.|. +-+..++|+.|++.......... .........+++..+|++.
T Consensus 178 ~---------------pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~ 242 (319)
T d2dg1a1 178 V---------------ANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLY 242 (319)
T ss_dssp S---------------EEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEE
T ss_pred e---------------eeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEE
Confidence 1 12799999998664 55677899999986432211111 1112234578999999988
Q ss_pred eecCCCCeEEEee--CCCCCccccCCcccccccceEEEEEcCCCCEEEEEe
Q 010256 457 PLGSLSGVVRRVK--GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 505 (514)
Q Consensus 457 ~s~s~d~~v~i~~--~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~ 505 (514)
++....+.|.+++ |..+....+......+...+++++|.|+...+.+.+
T Consensus 243 Va~~~~g~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~ 293 (319)
T d2dg1a1 243 VAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS 293 (319)
T ss_dssp EEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred EEEcCCCEEEEECCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence 8887888888732 222221222232334456788999999988777544
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.87 E-value=2.4e-06 Score=74.84 Aligned_cols=233 Identities=9% Similarity=0.038 Sum_probs=135.6
Q ss_pred CeEEEEECCCCCEEEEe-c-------CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCe
Q 010256 235 HINSISNNSDGETFISA-D-------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGS 306 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~-~-------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~ 306 (514)
....++|+++|+++++. . +++|..||..++...... .+ ...........++|.+++ +.++++...+.
T Consensus 19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~---~~-~~~~~~g~P~Gl~~~~dg-~~l~vad~~~~ 93 (314)
T d1pjxa_ 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVIC---KP-EVNGYGGIPAGCQCDRDA-NQLFVADMRLG 93 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEE---CC-EETTEECCEEEEEECSSS-SEEEEEETTTE
T ss_pred CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEE---CC-ccccCCCcceeEEEeCCC-CEEEEEECCCe
Confidence 35678999999988864 2 467989998755432211 00 111123346789999998 77777777778
Q ss_pred EEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCC--------------eEEEEEccCC
Q 010256 307 IRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYM--------------TLKLWDINMD 372 (514)
Q Consensus 307 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~--------------~i~iwd~~~~ 372 (514)
|..+|......... ....+... -...+.+++.++|.+.++-..+ .=++|.+...
T Consensus 94 i~~~~~~g~~~~~~-~~~~~g~~-----------~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d 161 (314)
T d1pjxa_ 94 LLVVQTDGTFEEIA-KKDSEGRR-----------MQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD 161 (314)
T ss_dssp EEEEETTSCEEECC-SBCTTSCB-----------CBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT
T ss_pred EEEEeCCCcEEEEE-eccccccc-----------cCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec
Confidence 88888766432100 00111100 0236789999999988873211 1134444332
Q ss_pred CCceeeeeeccccccccccccccCCccceeeEEEcCCCC-----EEEEEeCCCcEEEEecCCCceee-----eeecC-CC
Q 010256 373 SGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGG-----RVATGSYSNLFRVFGCSEGSAES-----TTLEA-SK 441 (514)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-----~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~-~~ 441 (514)
++.......-.. -..++|+|++. ++++-+..+.|+.|++....... ..+.. ..
T Consensus 162 g~~~~~~~~~~~----------------pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~ 225 (314)
T d1pjxa_ 162 GQMIQVDTAFQF----------------PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE 225 (314)
T ss_dssp SCEEEEEEEESS----------------EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS
T ss_pred CceeEeeCCcce----------------eeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccccc
Confidence 333222211111 11688998775 44555677889999876443321 11111 12
Q ss_pred cceeEEEECCCCCceeecCCCCeEEEee--CCCCCccccCCcccccccceEEEEEcCCCCEEEEEe
Q 010256 442 NPMRRQVQTPSRPSRPLGSLSGVVRRVK--GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAA 505 (514)
Q Consensus 442 ~~v~~~~~~~~~~~l~s~s~d~~v~i~~--~~~~~~~~~~~~~~~~~~~v~~~~~spd~~~l~~~~ 505 (514)
.....+++..+|++.++....+.|.+++ +..+.. .+. ......++++|.||++.|.+..
T Consensus 226 ~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~-~i~----~p~~~~t~~afg~d~~~lyVt~ 286 (314)
T d1pjxa_ 226 GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKM-RIR----CPFEKPSNLHFKPQTKTIFVTE 286 (314)
T ss_dssp CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSE-EEE----CSSSCEEEEEECTTSSEEEEEE
T ss_pred ccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEE-EEE----CCCCCEEEEEEeCCCCEEEEEE
Confidence 2345789999999888776677777743 222221 111 1246788999999998665544
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.76 E-value=1.8e-05 Score=69.31 Aligned_cols=156 Identities=5% Similarity=-0.014 Sum_probs=90.2
Q ss_pred CeEEEEECCCCCEEEEe-c------CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeE
Q 010256 235 HINSISNNSDGETFISA-D------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSI 307 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~-~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i 307 (514)
..+.+++.++|++.++. . .+.+..++... +....+ ...-...+.++|+|++..++++-+..+.|
T Consensus 131 ~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg-~~~~~~--------~~~~~~pnGia~s~dg~~lyvad~~~~~I 201 (319)
T d2dg1a1 131 CIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF-RTVTPI--------IQNISVANGIALSTDEKVLWVTETTANRL 201 (319)
T ss_dssp CEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS-CCEEEE--------EEEESSEEEEEECTTSSEEEEEEGGGTEE
T ss_pred CCcceeEEeccceeecccccccccCcceeEEEeccc-ceeEEE--------eeccceeeeeeeccccceEEEecccCCce
Confidence 46678889999877764 2 23355555442 222111 11223467899999994455666678999
Q ss_pred EEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeeccccc
Q 010256 308 RLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLR 386 (514)
Q Consensus 308 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~ 386 (514)
..||+................ ..........+++.++|++.++... +.|.+||.. ++.+..+.......
T Consensus 202 ~~~d~~~~g~~~~~~~~~~~~--------~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~--G~~l~~i~~P~~~~ 271 (319)
T d2dg1a1 202 HRIALEDDGVTIQPFGATIPY--------YFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR--GYPIGQILIPGRDE 271 (319)
T ss_dssp EEEEECTTSSSEEEEEEEEEE--------ECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT--SCEEEEEECTTGGG
T ss_pred EEEEEcCCCceeccccceeee--------ccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCC--CcEEEEEeCCCcCC
Confidence 999986432110000000000 0000123567999999998877644 999999964 78887776543211
Q ss_pred cccccccccCCccceeeEEEcCCCCEEEEEeC
Q 010256 387 PKLCDLYENDSIFDKFECCLSGDGGRVATGSY 418 (514)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 418 (514)
.....+++++|.+++..+++.+.
T Consensus 272 ---------~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 272 ---------GHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp ---------TCSCBCCEEEECTTSCEEEEEEE
T ss_pred ---------CcCceeeeEEEeCCCCEEEEEcC
Confidence 01111348999998877665543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=4e-05 Score=70.82 Aligned_cols=249 Identities=8% Similarity=0.054 Sum_probs=129.3
Q ss_pred ceeeccCCCccccccCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-c--
Q 010256 176 PKSYMANGGCGERNFGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D-- 252 (514)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~-- 252 (514)
...|.+++.. +.-..+|.+.+|+ ............ ..-....+....|+||+++++.. +
T Consensus 21 ~~~W~~~~~~-------------~~~~~~g~i~~~~-~~~~~~~~l~~~----~~~~~~~~~~~~~SpD~~~vl~~~~~~ 82 (465)
T d1xfda1 21 EAKWISDTEF-------------IYREQKGTVRLWN-VETNTSTVLIEG----KKIESLRAIRYEISPDREYALFSYNVE 82 (465)
T ss_dssp CCCBSSSSCB-------------CCCCSSSCEEEBC-GGGCCCEEEECT----TTTTTTTCSEEEECTTSSEEEEEESCC
T ss_pred CCEEeCCCcE-------------EEEeCCCcEEEEE-CCCCCEEEEEcC----ccccccccceeEECCCCCeEEEEEccc
Confidence 3457777664 3445677899888 333222111100 01122356778899999998775 2
Q ss_pred -------CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccce
Q 010256 253 -------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLF 325 (514)
Q Consensus 253 -------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 325 (514)
.+.+.++|+.++... .+. ........+....|+|+| +.+|... ++.|.+.+..++.... .+.
T Consensus 83 ~~~r~s~~~~~~i~d~~~~~~~-~l~-----~~~~~~~~l~~~~wSPDG-~~iafv~-~~nl~~~~~~~~~~~~---lt~ 151 (465)
T d1xfda1 83 PIYQHSYTGYYVLSKIPHGDPQ-SLD-----PPEVSNAKLQYAGWGPKG-QQLIFIF-ENNIYYCAHVGKQAIR---VVS 151 (465)
T ss_dssp CCSSSCCCSEEEEEESSSCCCE-ECC-----CTTCCSCCCSBCCBCSST-TCEEEEE-TTEEEEESSSSSCCEE---EEC
T ss_pred ceeEeeccccEEEEEccCCcee-ecc-----CccCCccccceeeeccCC-ceEEEEe-cceEEEEecCCCceEE---Eec
Confidence 367889999865432 110 112233455668899999 6776654 6678888876654321 111
Q ss_pred eccCCCCccceeeccc---------cceeEEEEecCCCEEEEE--eCCeEEEEEccCCC----Cceeeeeeccc--ccc-
Q 010256 326 EEQEAPGTRSFFTEII---------ASISDIKFARNGRHILSR--DYMTLKLWDINMDS----GPVATFQVHEH--LRP- 387 (514)
Q Consensus 326 ~~~~~~~~~~~~~~~~---------~~i~~~~~s~~g~~l~~~--~~~~i~iwd~~~~~----~~~~~~~~~~~--~~~- 387 (514)
.+.. ...+.+.. +.-.++.|||||++||.. ++..|..+.+.... .....+..... ..+
T Consensus 152 ~g~~----~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~ 227 (465)
T d1xfda1 152 TGKE----GVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPS 227 (465)
T ss_dssp CCBT----TTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCE
T ss_pred ccCc----ceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCc
Confidence 1111 01111111 122567899999999975 34555555543211 01111111000 000
Q ss_pred ---ccccc---------cccC----CccceeeEEEcCCCCEEEEEeC-C---CcEEEEecCCCceeeeeecCCCcce---
Q 010256 388 ---KLCDL---------YEND----SIFDKFECCLSGDGGRVATGSY-S---NLFRVFGCSEGSAESTTLEASKNPM--- 444 (514)
Q Consensus 388 ---~~~~~---------~~~~----~~~~v~~~~~s~~~~~l~s~~~-d---g~i~iwd~~~~~~~~~~~~~~~~~v--- 444 (514)
.+.++ .... .-.-+..+.|++++++++.... + ..+.++|..+++.....-+.....|
T Consensus 228 ~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~ 307 (465)
T d1xfda1 228 ISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQ 307 (465)
T ss_dssp EEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCC
T ss_pred eeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEecc
Confidence 00000 0000 0001346889999987765432 2 2578899998865433222222222
Q ss_pred -eEEEECCCCCcee
Q 010256 445 -RRQVQTPSRPSRP 457 (514)
Q Consensus 445 -~~~~~~~~~~~l~ 457 (514)
....|+++++.++
T Consensus 308 ~~~p~~~~dg~~~~ 321 (465)
T d1xfda1 308 NEEPVFSKDGRKFF 321 (465)
T ss_dssp CCCCEECTTSCSEE
T ss_pred CCceeEccCCCeeE
Confidence 3467899998543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.40 E-value=0.00038 Score=59.72 Aligned_cols=145 Identities=11% Similarity=0.089 Sum_probs=88.2
Q ss_pred CeEEEEECCCCCEEEEe-c----CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEE
Q 010256 235 HINSISNNSDGETFISA-D----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 309 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~-~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~ 309 (514)
.++++.+.|+|++.++. . .+.-.+|.+..++ ...+ ...-.....++|++++..++++-+..+.|..
T Consensus 104 ~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~-~~~~--------~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~ 174 (295)
T d2ghsa1 104 RSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK-VTKL--------FADISIPNSICFSPDGTTGYFVDTKVNRLMR 174 (295)
T ss_dssp EEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE-EEEE--------EEEESSEEEEEECTTSCEEEEEETTTCEEEE
T ss_pred cceeeEECCCCCEEEEeccccccccceeEeeecCCc-EEEE--------eeccCCcceeeecCCCceEEEeecccceeeE
Confidence 46778888888877764 2 2344556555332 2211 1122345789999998546666677889999
Q ss_pred EEcCCCcccc-ccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCceeeeeecccccc
Q 010256 310 IDMRQSALCD-THSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVATFQVHEHLRP 387 (514)
Q Consensus 310 wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~ 387 (514)
|++....... .....+.. +.+..+....+++..+|.+.++.-. +.|..||.. ++.+..+......
T Consensus 175 ~~~d~~~~~~~~~~~~~~~---------~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~--G~~~~~i~lP~~~-- 241 (295)
T d2ghsa1 175 VPLDARTGLPTGKAEVFID---------STGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD--GNHIARYEVPGKQ-- 241 (295)
T ss_dssp EEBCTTTCCBSSCCEEEEE---------CTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT--CCEEEEEECSCSB--
T ss_pred eeecccccccccceEEEec---------cCcccccccceEEcCCCCEEeeeeCCCceEEecCC--CcEeeEecCCCCc--
Confidence 9875422110 00111110 1112245788999999998887644 889999964 7888877665432
Q ss_pred ccccccccCCccceeeEEEc-CCCCEEE
Q 010256 388 KLCDLYENDSIFDKFECCLS-GDGGRVA 414 (514)
Q Consensus 388 ~~~~~~~~~~~~~v~~~~~s-~~~~~l~ 414 (514)
+++++|- +|.+.|+
T Consensus 242 -------------~T~~~FGG~d~~~Ly 256 (295)
T d2ghsa1 242 -------------TTCPAFIGPDASRLL 256 (295)
T ss_dssp -------------EEEEEEESTTSCEEE
T ss_pred -------------eEEEEEeCCCCCEEE
Confidence 3489995 5666554
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.36 E-value=2.9e-05 Score=66.46 Aligned_cols=70 Identities=10% Similarity=0.129 Sum_probs=45.8
Q ss_pred EEcCC--CCeEEEecCCCeEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCccccccccccccceeEEE
Q 010256 42 EFDKS--GDHLATGDRGGRVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR 119 (514)
Q Consensus 42 ~~s~~--g~~l~tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~v~~i~ 119 (514)
..||| |+.+|..+ +|.|.+.|+.+++. ..+..+. +.+...+
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~------------------------~~Lt~~~------------~~~~~p~ 47 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGST------------------------RKIVSNL------------GVINNAR 47 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCE------------------------EEEECSS------------SEEEEEE
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCCCCE------------------------EEEecCC------------CcccCEE
Confidence 35788 99988764 56788888887663 2233343 5678889
Q ss_pred EeeCCCCcEEEEeeC-C-----CeEEEEEcCccEEEE
Q 010256 120 WCQSANSALYLLSTN-D-----KTIKLWKVQEKKVKK 150 (514)
Q Consensus 120 ~~~~~~~~~l~s~~~-d-----~~i~iw~~~~~~~~~ 150 (514)
| ++||+.|+.... + ..|.+++..+++...
T Consensus 48 ~--SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~ 82 (281)
T d1k32a2 48 F--FPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR 82 (281)
T ss_dssp E--CTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred E--CCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence 9 678888886432 2 236666666666544
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.31 E-value=0.00061 Score=58.36 Aligned_cols=219 Identities=13% Similarity=0.034 Sum_probs=130.4
Q ss_pred EEEECCCCCEEE-Ee-cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCC
Q 010256 238 SISNNSDGETFI-SA-DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 315 (514)
Q Consensus 238 ~~~~~~~~~~l~-s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~ 315 (514)
+..|++....|. +- ..+.|..||.+++.... + .....+.++++.+++ .+++ ++. ..+.++|..++
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~--~--------~~~~~~~~i~~~~dg-~l~v-a~~-~gl~~~d~~tg 88 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKTV--H--------ALPFMGSALAKISDS-KQLI-ASD-DGLFLRDTATG 88 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--E--------ECSSCEEEEEEEETT-EEEE-EET-TEEEEEETTTC
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeEEE--E--------ECCCCcEEEEEecCC-CEEE-EEe-CccEEeecccc
Confidence 456887554444 44 78999999998654321 1 124567899999998 6665 444 46889999887
Q ss_pred ccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe-----CCeEEEEEccCCCCceeeeeeccccccccc
Q 010256 316 ALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-----YMTLKLWDINMDSGPVATFQVHEHLRPKLC 390 (514)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 390 (514)
+.. .+...... .....++.+.+.|+|++.++.. .+.-.+|.+.. ++...........
T Consensus 89 ~~~-----~l~~~~~~-------~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~-g~~~~~~~~~~~~----- 150 (295)
T d2ghsa1 89 VLT-----LHAELESD-------LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAK-GKVTKLFADISIP----- 150 (295)
T ss_dssp CEE-----EEECSSTT-------CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEET-TEEEEEEEEESSE-----
T ss_pred eee-----EEeeeecC-------CCcccceeeEECCCCCEEEEeccccccccceeEeeecC-CcEEEEeeccCCc-----
Confidence 642 11111100 0113578899999999887642 14556777664 4433332221111
Q ss_pred cccccCCccceeeEEEcCCCCEEE-EEeCCCcEEEEecCCCce------e-eeeecCCCcceeEEEECCCCCceeecCCC
Q 010256 391 DLYENDSIFDKFECCLSGDGGRVA-TGSYSNLFRVFGCSEGSA------E-STTLEASKNPMRRQVQTPSRPSRPLGSLS 462 (514)
Q Consensus 391 ~~~~~~~~~~v~~~~~s~~~~~l~-s~~~dg~i~iwd~~~~~~------~-~~~~~~~~~~v~~~~~~~~~~~l~s~s~d 462 (514)
..++|+++++.+. +-+..+.|+.|++..... . .....+.......+++..+|++.++.-..
T Consensus 151 -----------Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~ 219 (295)
T d2ghsa1 151 -----------NSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGE 219 (295)
T ss_dssp -----------EEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETT
T ss_pred -----------ceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCC
Confidence 2789999998655 555678899888753211 1 11222344556788999999877776555
Q ss_pred CeEEEee--CCCCCccccCCcccccccceEEEEEc-CCCCEEEEE
Q 010256 463 GVVRRVK--GADNSALDANGNAFDFSMKLLHLAWH-PSENSIACA 504 (514)
Q Consensus 463 ~~v~i~~--~~~~~~~~~~~~~~~~~~~v~~~~~s-pd~~~l~~~ 504 (514)
+.|..++ |.... .+.. ....+++++|- ||.+.|.+.
T Consensus 220 g~V~~~dp~G~~~~--~i~l----P~~~~T~~~FGG~d~~~LyvT 258 (295)
T d2ghsa1 220 GAVDRYDTDGNHIA--RYEV----PGKQTTCPAFIGPDASRLLVT 258 (295)
T ss_dssp TEEEEECTTCCEEE--EEEC----SCSBEEEEEEESTTSCEEEEE
T ss_pred CceEEecCCCcEee--EecC----CCCceEEEEEeCCCCCEEEEE
Confidence 6565522 22111 1111 13578999995 787777644
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.23 E-value=4e-05 Score=65.55 Aligned_cols=100 Identities=17% Similarity=0.129 Sum_probs=62.9
Q ss_pred EECCC--CCEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEe-cCC-----eEEEEE
Q 010256 240 SNNSD--GETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKG-----SIRLID 311 (514)
Q Consensus 240 ~~~~~--~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg-----~i~~wd 311 (514)
..+|| |+.++-..++.|.+.|+..++. . .+..+...+...+||||| +.||... .++ .|.+++
T Consensus 5 ~~sPdi~G~~v~f~~~~dl~~~d~~~g~~-~--------~Lt~~~~~~~~p~~SPDG-~~iaf~~~~~~~~~~~~i~~~~ 74 (281)
T d1k32a2 5 LLNPDIHGDRIIFVCCDDLWEHDLKSGST-R--------KIVSNLGVINNARFFPDG-RKIAIRVMRGSSLNTADLYFYN 74 (281)
T ss_dssp CEEEEEETTEEEEEETTEEEEEETTTCCE-E--------EEECSSSEEEEEEECTTS-SEEEEEEEESTTCCEEEEEEEE
T ss_pred ccCCCCCCCEEEEEeCCcEEEEECCCCCE-E--------EEecCCCcccCEEECCCC-CEEEEEEeeCCCCCceEEEEEE
Confidence 35688 9998877777888889985543 2 234456778899999999 6666543 222 366777
Q ss_pred cCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE
Q 010256 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR 359 (514)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~ 359 (514)
..+++... +..... .............|+|+|+.|+..
T Consensus 75 ~~~g~~~~--lt~~~~--------~~~~~~~~~~~~~~spdg~~l~~~ 112 (281)
T d1k32a2 75 GENGEIKR--ITYFSG--------KSTGRRMFTDVAGFDPDGNLIIST 112 (281)
T ss_dssp TTTTEEEE--CCCCCE--------EEETTEECSEEEEECTTCCEEEEE
T ss_pred ecCCceEE--eeecCC--------CccCccccccccccCCCCCEEEEE
Confidence 76665321 100000 011112345678999999998874
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.60 E-value=0.02 Score=50.65 Aligned_cols=83 Identities=16% Similarity=0.083 Sum_probs=50.0
Q ss_pred ceEEEEEcCCCCeEEEecCC-----C------eEEEEEecCCcccCCcccccccccccccCCccceeeeeeccCCCcccc
Q 010256 37 IISAIEFDKSGDHLATGDRG-----G------RVVLFERTDTRDNGGQRRDLEMMDYSMSRHPEFRYKTEFQSHEPEFDY 105 (514)
Q Consensus 37 ~V~~~~~s~~g~~l~tg~~d-----g------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 105 (514)
.+.......+|+.++.|+.+ + .+.+||..+++..... .....|.
T Consensus 21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~--------------------~~~~~~~----- 75 (387)
T d1k3ia3 21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT--------------------VTVTKHD----- 75 (387)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE--------------------EEECSCC-----
T ss_pred ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecC--------------------CCCCCcc-----
Confidence 34455556789988888742 1 3678998877653100 0011111
Q ss_pred ccccccccceeEEEEeeCCCCcEEEEeeCC-CeEEEEEcCccEEEEEee
Q 010256 106 LKSLEIEEKINKIRWCQSANSALYLLSTND-KTIKLWKVQEKKVKKVFD 153 (514)
Q Consensus 106 ~~~~~~~~~v~~i~~~~~~~~~~l~s~~~d-~~i~iw~~~~~~~~~~~~ 153 (514)
.-.....+ ..++.+++.|+.+ ..+.+||..+........
T Consensus 76 -------~~~~~~~~--~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~ 115 (387)
T d1k3ia3 76 -------MFCPGISM--DGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPD 115 (387)
T ss_dssp -------CSSCEEEE--CTTSCEEEECSSSTTCEEEEEGGGTEEEECCC
T ss_pred -------cceeEEEE--ecCCcEEEeecCCCcceeEecCccCccccccc
Confidence 11233445 5678888887554 689999999987655433
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.45 E-value=0.021 Score=50.50 Aligned_cols=160 Identities=10% Similarity=-0.042 Sum_probs=81.7
Q ss_pred CCCCcEEEEeeCC-----C------eEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCccccccC
Q 010256 123 SANSALYLLSTND-----K------TIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCGERNFG 191 (514)
Q Consensus 123 ~~~~~~l~s~~~d-----~------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~ 191 (514)
..+|+.++.|+.+ + .+.+||..+++........... ...+...++.++|+.+
T Consensus 28 ~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~------------~~~~~~~~~~~~g~i~----- 90 (387)
T d1k3ia3 28 PTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKH------------DMFCPGISMDGNGQIV----- 90 (387)
T ss_dssp TTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSC------------CCSSCEEEECTTSCEE-----
T ss_pred eeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCc------------ccceeEEEEecCCcEE-----
Confidence 3567777777642 1 3678999987654332222110 0112245677888876
Q ss_pred CCCCCcccCCCCC-CcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-c-C-----CeEEEEeccC
Q 010256 192 CASNDSSFPPGGV-SSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-D-D-----LRINLWNLEI 263 (514)
Q Consensus 192 ~~~~~~~~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~-d-----~~i~iwd~~~ 263 (514)
+.|+.+ ..+.+|| .....-... ... . ....-...+..+||++++.| . + ..+.+||..+
T Consensus 91 -------v~Gg~~~~~~~~yd-~~~~~w~~~----~~~-~-~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~ 156 (387)
T d1k3ia3 91 -------VTGGNDAKKTSLYD-SSSDSWIPG----PDM-Q-VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 156 (387)
T ss_dssp -------EECSSSTTCEEEEE-GGGTEEEEC----CCC-S-SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred -------EeecCCCcceeEec-CccCccccc----ccc-c-ccccccceeeecCCceeeeccccccccccceeeeecCCC
Confidence 666544 5788888 322211110 000 0 11122356778899999887 3 1 4689999885
Q ss_pred CCceeeeec-cCC-Ccccc-cC-----CceEEEEEecCCCcEEEEEecCCeEEEEEcCCCc
Q 010256 264 SNQSFNIVD-VKP-ANMED-LT-----EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA 316 (514)
Q Consensus 264 ~~~~~~~~~-~~~-~~~~~-~~-----~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~ 316 (514)
..-. .+. ... ..... +. ..-..+...+++ .+++.+...+.+.++|..+..
T Consensus 157 ~~W~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~~~~g~~~~~~~~~~~~~~~ 214 (387)
T d1k3ia3 157 KTWT--SLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKG-SVFQAGPSTAMNWYYTSGSGD 214 (387)
T ss_dssp TEEE--EETTSCSGGGCCCCTTGGGTTTCSCCEEECGGG-CEEECCSSSEEEEEECSTTCE
T ss_pred Ccee--ecCCCcccccccccccceeeccceeEEEEeCCC-CEEEecCcCCcEEecCcccCc
Confidence 4321 111 000 00000 00 001112233455 677777777777777776654
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.34 E-value=0.013 Score=51.16 Aligned_cols=77 Identities=9% Similarity=0.050 Sum_probs=51.1
Q ss_pred eEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCC----cccccCCceEEEEEecCCCcEEEEEecCCeEEE
Q 010256 236 INSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPA----NMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRL 309 (514)
Q Consensus 236 v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~ 309 (514)
...+.++|||++++++ -+.++.++|++.-...+.- ...+. ......-.....+|...| +...+---|..|.-
T Consensus 277 PHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~-~~~~~~~~~~e~elglgPLht~fd~~g-~aytslfids~v~k 354 (459)
T d1fwxa2 277 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYE-NADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVK 354 (459)
T ss_dssp CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHS-CC-GGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEE
T ss_pred CCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcc-cCCccccEEeecccCcCccccccCCCc-eEEEEeeccceEEE
Confidence 4578899999999887 6999999999742221100 00000 001123445677899888 66666667999999
Q ss_pred EEcCC
Q 010256 310 IDMRQ 314 (514)
Q Consensus 310 wd~~~ 314 (514)
|++..
T Consensus 355 w~~~~ 359 (459)
T d1fwxa2 355 WNIED 359 (459)
T ss_dssp EEHHH
T ss_pred Eecch
Confidence 99864
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=97.26 E-value=0.047 Score=47.03 Aligned_cols=168 Identities=12% Similarity=0.068 Sum_probs=90.7
Q ss_pred eEEEEECCCCCEEEEe-c------------CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEE--ecCCCcEEEE
Q 010256 236 INSISNNSDGETFISA-D------------DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF--HPTHCNMLAY 300 (514)
Q Consensus 236 v~~~~~~~~~~~l~s~-~------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~--~p~~~~~l~~ 300 (514)
.-+|+..|+|..++++ . .|.|.++|+.........+...........-....+.. .+++..+|++
T Consensus 37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v 116 (340)
T d1v04a_ 37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 116 (340)
T ss_dssp CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence 3467778888777664 2 38899999876554333221111111111122344443 3455334444
Q ss_pred Ee---cCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEe----------------C
Q 010256 301 SS---SKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD----------------Y 361 (514)
Q Consensus 301 ~~---~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~----------------~ 361 (514)
.. ...+|.+|++............+..+. ....+++++..+|.++++-+ .
T Consensus 117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~-----------~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~ 185 (340)
T d1v04a_ 117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKL-----------LPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGL 185 (340)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTT-----------CSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTC
T ss_pred EeccCCCceeEEEEEeCCCCeEEEEeecCCcc-----------ccCccceEEecCCCEEEecCccCcChhhhhhhHhhcC
Confidence 43 356788888865432222222332221 14578899999998888731 0
Q ss_pred CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEE-eCCCcEEEEecCCCc
Q 010256 362 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGS 431 (514)
Q Consensus 362 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~~~~~ 431 (514)
+...+|..+. +.......+-.. -..++++||+++|+.+ +..++|++|++....
T Consensus 186 ~~g~v~~~~~-~~~~~~~~~l~~----------------pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~ 239 (340)
T d1v04a_ 186 AWSFVTYYSP-NDVRVVAEGFDF----------------ANGINISPDGKYVYIAELLAHKIHVYEKHANW 239 (340)
T ss_dssp CCEEEEEECS-SCEEEEEEEESS----------------EEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred CceeEEEEcC-CceEEEcCCCCc----------------cceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence 2334454443 222111111111 1279999999877654 567889999987543
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.77 E-value=0.11 Score=42.88 Aligned_cols=174 Identities=9% Similarity=-0.012 Sum_probs=96.3
Q ss_pred CeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCC--eEEEE
Q 010256 235 HINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKG--SIRLI 310 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg--~i~~w 310 (514)
.+.+++++.-+..|..+ ..+.|.+.++...... .+. ......+..++++|..+.++.+-...+ .|.--
T Consensus 80 ~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~-~l~-------~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~ 151 (263)
T d1npea_ 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR-VLF-------DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETS 151 (263)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEE-------CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEE
T ss_pred cccEEEEeccCCeEEEeccCCCEEEEEecCCceEE-EEe-------cccccCCcEEEEecccCcEEEeecCCCCcEEEEe
Confidence 46788888766666554 6789999998744322 121 122356789999998744444432222 34444
Q ss_pred EcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC--CeEEEEEccCCCCceeee-eecccccc
Q 010256 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATF-QVHEHLRP 387 (514)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~~~~~~~~~-~~~~~~~~ 387 (514)
++..... ..+- ........++++.+.++.|+..+. +.|...|+.. .....+ .+...+
T Consensus 152 ~~dG~~~-----~~i~-----------~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g--~~~~~v~~~~~~P-- 211 (263)
T d1npea_ 152 HMDGTNR-----RILA-----------QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ--PGRRKVLEGLQYP-- 211 (263)
T ss_dssp ETTSCCC-----EEEE-----------CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE--EEEEEEEECCCSE--
T ss_pred cCCCCCc-----eeee-----------eecccccceEEEeecCcEEEEEeCCCCEEEEEECCC--CCeEEEECCCCCc--
Confidence 5543221 1111 111135678999988887776543 8888888863 222222 211111
Q ss_pred ccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCCcceeEEEECC
Q 010256 388 KLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTP 451 (514)
Q Consensus 388 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 451 (514)
+++++. ++.+..+-...+.|...|..+++.....++........+++.+
T Consensus 212 --------------~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~ 260 (263)
T d1npea_ 212 --------------FAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL 260 (263)
T ss_dssp --------------EEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred --------------EEEEEE-CCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEeC
Confidence 156664 3334444446688888898877544333334444444555543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.51 E-value=0.22 Score=43.30 Aligned_cols=105 Identities=10% Similarity=0.136 Sum_probs=63.1
Q ss_pred ceeEEEEecCCCEEEEEeC--CeEEEEEccC-------CCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEE
Q 010256 343 SISDIKFARNGRHILSRDY--MTLKLWDINM-------DSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRV 413 (514)
Q Consensus 343 ~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 413 (514)
....+.++|||+++++++. .++.|+|++. ...+...+.+.... .+ .=.-.+|+..|+-.
T Consensus 276 sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~el--gl----------gPLht~fd~~g~ay 343 (459)
T d1fwxa2 276 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL--GL----------GPLHTAFDGRGNAY 343 (459)
T ss_dssp SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBC--CS----------CEEEEEECTTSEEE
T ss_pred CCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeeccc--Cc----------CccccccCCCceEE
Confidence 3567899999999999754 8999999964 01111111111110 00 01246888888766
Q ss_pred EEEeCCCcEEEEecCCC---------ceeeeeecCCCcceeEE-----EECCCCCceeec
Q 010256 414 ATGSYSNLFRVFGCSEG---------SAESTTLEASKNPMRRQ-----VQTPSRPSRPLG 459 (514)
Q Consensus 414 ~s~~~dg~i~iwd~~~~---------~~~~~~~~~~~~~v~~~-----~~~~~~~~l~s~ 459 (514)
.|---|..|--|++... ......+..|-.+=.-. ...|+|+||++.
T Consensus 344 tslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~ 403 (459)
T d1fwxa2 344 TSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCL 403 (459)
T ss_dssp EEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEE
T ss_pred EEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEe
Confidence 66678999999998421 12234444444332222 236899998876
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.96 E-value=0.33 Score=39.86 Aligned_cols=161 Identities=13% Similarity=0.158 Sum_probs=87.3
Q ss_pred CEEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEe---c----CCeEEEEEcCCCccc
Q 010256 246 ETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS---S----KGSIRLIDMRQSALC 318 (514)
Q Consensus 246 ~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~---~----dg~i~~wd~~~~~~~ 318 (514)
+.|+-..+..|+-|+++......++++..+ .+ ....|..-..+++. ++++..+ . .|.+.||..+.+.
T Consensus 114 ~~L~lVT~taVYHW~~~g~s~P~k~fdR~~-~L--~~~QIInY~~d~~~-kW~~l~GI~~~~~~i~G~mQLYS~er~~-- 187 (327)
T d1utca2 114 NTVALVTDNAVYHWSMEGESQPVKMFDRHS-SL--AGCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAMQLYSVDRKV-- 187 (327)
T ss_dssp SEEEEECSSEEEEEESSSSCCCEEEEECCG-GG--TTCEEEEEEECTTS-CEEEEEEEEEETTEEEEEEEEEETTTTE--
T ss_pred CEEEEEcCCceEEEcccCCCCchhhhhhcc-cc--cCceEEEEEECCCC-CEEEEEeEecCCCceeEEEEEEEeccCc--
Confidence 355555667899999965444444443222 22 25677788888888 6655432 2 3567788776543
Q ss_pred cccccceeccCCCCccceeeccccceeEEEEecCC---CEEEEE---eC-CeEEEEEccCCCCceeeeeecccccccccc
Q 010256 319 DTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNG---RHILSR---DY-MTLKLWDINMDSGPVATFQVHEHLRPKLCD 391 (514)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g---~~l~~~---~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 391 (514)
.+. +.||.+....+.+..+. .+++-+ .. ++++|.++..+...-..+....-..
T Consensus 188 ---sQ~------------ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi----- 247 (327)
T d1utca2 188 ---SQP------------IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDV----- 247 (327)
T ss_dssp ---EEE------------ECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEEC-----
T ss_pred ---Ccc------------ccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEE-----
Confidence 222 33443433333332111 122222 22 7899999876221111111000000
Q ss_pred ccccCCc--cceeeEEEcCCCCEEEEEeCCCcEEEEecCCCcee
Q 010256 392 LYENDSI--FDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 392 ~~~~~~~--~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
++..+.. +.| ++..|+.-..+..-+.-|.|++||++++.++
T Consensus 248 ~fppea~~DFPv-amqvs~kygiiyviTK~G~i~lyDleTgt~i 290 (327)
T d1utca2 248 FFPPEAQNDFPV-AMQISEKHDVVFLITKYGYIHLYDLETGTCI 290 (327)
T ss_dssp CCCTTCTTCCEE-EEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred ECCccccCCcEE-EEEeeccCCEEEEEecCcEEEEEEcccccEE
Confidence 0000110 111 6778888888888899999999999999654
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.77 E-value=0.4 Score=39.33 Aligned_cols=161 Identities=10% Similarity=-0.010 Sum_probs=92.1
Q ss_pred cCeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEe-cCCeEEEE
Q 010256 234 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSS-SKGSIRLI 310 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg~i~~w 310 (514)
..+.++++.+.+..|..+ ..+.|.+.++.... ...+ ..........++++|..+.++.+-. ..+.|.-.
T Consensus 77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~-~~~~-------~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~ 148 (266)
T d1ijqa1 77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTL-------FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 148 (266)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEE-------EECTTCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred CCcceEEEeeccceEEEEecCCCEEEeEecCCce-EEEE-------EcCCCCCcceEEEEcccCeEEEeccCCCcceeEe
Confidence 456688998876666665 67899999988433 2221 1223456789999996634444432 23466666
Q ss_pred EcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC--CeEEEEEccCCCCceeeeeeccccccc
Q 010256 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPK 388 (514)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~ 388 (514)
++..... ..+- ........++++.+.++.|+..+. +.|...++.. ..............
T Consensus 149 ~~dGs~~-----~~l~-----------~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG-~~~~~~~~~~~~~~-- 209 (266)
T d1ijqa1 149 GLNGVDI-----YSLV-----------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLA-- 209 (266)
T ss_dssp ETTSCCE-----EEEE-----------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTS--
T ss_pred ccCCCce-----eccc-----------ccccceeeEEEeeccccEEEEecCCcCEEEEEECCC-CCEEEEEeCCCccc--
Confidence 6654322 1111 111135688999998887777643 7888888863 22222222221110
Q ss_pred cccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCcee
Q 010256 389 LCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 389 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
.-.++++. ++.++.+-..++.|+..+..+++..
T Consensus 210 -----------~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~~~ 242 (266)
T d1ijqa1 210 -----------HPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV 242 (266)
T ss_dssp -----------SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred -----------ccEEEEEE-CCEEEEEECCCCeEEEEECCCCcce
Confidence 01256655 3333444446788888887776443
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=95.12 E-value=1.2 Score=40.97 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=21.6
Q ss_pred CCCEEEEEeCCCcEEEEecCCCcee
Q 010256 409 DGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 409 ~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
.+.++++|+.||.++-+|.++|+.+
T Consensus 474 agglVf~G~~dg~l~A~Da~tGe~l 498 (571)
T d2ad6a1 474 KGGLVWYATLDGYLKALDNKDGKEL 498 (571)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cCCEEEEECCCCeEEEEECCCCcEE
Confidence 5678888999999999999999654
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=94.97 E-value=0.91 Score=38.61 Aligned_cols=125 Identities=8% Similarity=0.086 Sum_probs=67.9
Q ss_pred ceEEEEE--ecCCCc-EEEEEecCCeEEEEEcCC---CccccccccceeccCCCCccceeeccccceeEEEEecCCCEEE
Q 010256 284 VITSAEF--HPTHCN-MLAYSSSKGSIRLIDMRQ---SALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHIL 357 (514)
Q Consensus 284 ~i~~v~~--~p~~~~-~l~~~~~dg~i~~wd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 357 (514)
.++.+++ +|..+. +++....+|.+..|.+.. +......++.|... ..+..|.+......|+
T Consensus 129 ~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~-------------~q~EGCVvDde~~~Ly 195 (353)
T d1h6la_ 129 EVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN-------------SQTEGMAADDEYGSLY 195 (353)
T ss_dssp SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS-------------SCEEEEEEETTTTEEE
T ss_pred cceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC-------------CccceEEEeCCCCcEE
Confidence 4667776 565423 456667789998887743 33323334444433 4688999999888888
Q ss_pred EEeC-CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEE--cCC--CCEEEEEeCCCcEEEEecCCC
Q 010256 358 SRDY-MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCL--SGD--GGRVATGSYSNLFRVFGCSEG 430 (514)
Q Consensus 358 ~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~--~~~l~s~~~dg~i~iwd~~~~ 430 (514)
.+.. ..|..++..........+....... .-..++..++. ..+ |-+|++.-.+++..|||....
T Consensus 196 isEE~~Giw~~~a~~~~~~~~~~i~~~~g~---------~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGR---------HLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp EEETTTEEEEEESSTTSCSCCEEEEECSSS---------SCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred EecCccceEEEEeccCCCccceeeecccCc---------cccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 8865 5555555542111111111110000 00012224443 233 334555557889999998764
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=94.90 E-value=1.2 Score=39.64 Aligned_cols=59 Identities=17% Similarity=0.176 Sum_probs=40.3
Q ss_pred cCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCC-CcccccCCceEEEEEecC
Q 010256 234 YHINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKP-ANMEDLTEVITSAEFHPT 293 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~i~~v~~~p~ 293 (514)
...++|+|.|++++|++- ..|.|++++..++.. ..+..+.. ............|+|+|+
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~-~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSV-KTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcE-eecccCCccccccCCCCceeeEEeCCC
Confidence 467799999999999998 689999998775432 22222211 111233567889999995
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.68 E-value=0.89 Score=37.11 Aligned_cols=181 Identities=8% Similarity=-0.053 Sum_probs=98.9
Q ss_pred EEEEecCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEE-ecCCeEEEEEcCCCccccccccce
Q 010256 247 TFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYS-SSKGSIRLIDMRQSALCDTHSKLF 325 (514)
Q Consensus 247 ~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~ 325 (514)
+|+.+....|+..++++.... .+ ......+.+++|++.. +.++.. ...+.|.-.++........ ....
T Consensus 3 fLl~s~~~~I~~~~l~~~~~~-~~--------~~~~~~~~~id~d~~~-~~lYw~D~~~~~I~~~~l~~~~~~~~-~~~~ 71 (266)
T d1ijqa1 3 YLFFTNRHEVRKMTLDRSEYT-SL--------IPNLRNVVALDTEVAS-NRIYWSDLSQRMICSTQLDRAHGVSS-YDTV 71 (266)
T ss_dssp EEEEECBSSEEEEETTSCCCE-EE--------ECSCSSEEEEEEETTT-TEEEEEETTTTEEEEEEC---------CEEE
T ss_pred EEEEECCCeEEEEECCCCcce-ee--------eCCCCceEEEEEEeCC-CEEEEEECCCCEEEEEEecCCCCCcc-eEEE
Confidence 445554456888888754322 21 1133457889999887 455544 3566677666643221100 1111
Q ss_pred eccCCCCccceeeccccceeEEEEecCCCEEEEEe-C-CeEEEEEccCCCCceeee-eeccccccccccccccCCcccee
Q 010256 326 EEQEAPGTRSFFTEIIASISDIKFARNGRHILSRD-Y-MTLKLWDINMDSGPVATF-QVHEHLRPKLCDLYENDSIFDKF 402 (514)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~-~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~ 402 (514)
.......+..+++.+.+..|+..+ . ++|.+.++.. .....+ ...... ..
T Consensus 72 -----------~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g--~~~~~~~~~~~~~---------------P~ 123 (266)
T d1ijqa1 72 -----------ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG--VKRKTLFRENGSK---------------PR 123 (266)
T ss_dssp -----------ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS--SSEEEEEECTTCC---------------EE
T ss_pred -----------EeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCC--ceEEEEEcCCCCC---------------cc
Confidence 111123567899988777777654 3 8999999874 332222 211111 12
Q ss_pred eEEEcCCCCEEEEEe--CCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCcee-ecCCCCeEEE
Q 010256 403 ECCLSGDGGRVATGS--YSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRP-LGSLSGVVRR 467 (514)
Q Consensus 403 ~~~~s~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~s~d~~v~i 467 (514)
.++++|...+|.... ..+.|.-.++... ...............+++.+.++.|. +-+..+.|..
T Consensus 124 ~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs-~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~ 190 (266)
T d1ijqa1 124 AIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 190 (266)
T ss_dssp EEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred eEEEEcccCeEEEeccCCCcceeEeccCCC-ceecccccccceeeEEEeeccccEEEEecCCcCEEEE
Confidence 788988776666543 3345666666533 22233334445567889988766444 4355667766
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.63 E-value=0.9 Score=36.99 Aligned_cols=193 Identities=9% Similarity=-0.018 Sum_probs=111.1
Q ss_pred cCeEEEEECCCCCEEEEe--cCCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEE
Q 010256 234 YHINSISNNSDGETFISA--DDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLID 311 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd 311 (514)
..+.+++|++..+.|.-+ .++.|+..+++..... .++ ......+.++++..-+.++..+-...+.|.+.+
T Consensus 36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~-~v~-------~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~ 107 (263)
T d1npea_ 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT-TII-------RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAK 107 (263)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE-EEE-------CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcE-EEE-------EeccccccEEEEeccCCeEEEeccCCCEEEEEe
Confidence 457789999887777766 6788998888744332 221 112346789999876635555666678999999
Q ss_pred cCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC--CeEEEEEccCCCCceeeeeecccccccc
Q 010256 312 MRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY--MTLKLWDINMDSGPVATFQVHEHLRPKL 389 (514)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 389 (514)
+..... ..+.. ........+++.|...+++.... +..+|+.....+.....+.... .
T Consensus 108 ~dg~~~-----~~l~~-----------~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~-~---- 166 (263)
T d1npea_ 108 MDGTQR-----RVLFD-----------TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDN-L---- 166 (263)
T ss_dssp TTSCSC-----EEEEC-----------SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTT-C----
T ss_pred cCCceE-----EEEec-----------ccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeec-c----
Confidence 875432 11111 11145789999997777765432 3334554443344333332111 1
Q ss_pred ccccccCCccceeeEEEcCCCCEEEEE-eCCCcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE
Q 010256 390 CDLYENDSIFDKFECCLSGDGGRVATG-SYSNLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR 467 (514)
Q Consensus 390 ~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i 467 (514)
.....+++.+.++.|..+ ...+.|...++... .....+.+-..| ..+++. ++.+..+-...+.|..
T Consensus 167 ---------~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~-~~~~v~~~~~~P-~~lav~-~~~lYwtd~~~~~I~~ 233 (263)
T d1npea_ 167 ---------GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP-GRRKVLEGLQYP-FAVTSY-GKNLYYTDWKTNSVIA 233 (263)
T ss_dssp ---------SCEEEEEEETTTTEEEEEETTTTEEEEEETTEE-EEEEEEECCCSE-EEEEEE-TTEEEEEETTTTEEEE
T ss_pred ---------cccceEEEeecCcEEEEEeCCCCEEEEEECCCC-CeEEEECCCCCc-EEEEEE-CCEEEEEECCCCEEEE
Confidence 011278998887777555 46678988888743 332344443333 456664 3333344334444444
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.67 E-value=2.1 Score=37.67 Aligned_cols=102 Identities=12% Similarity=0.143 Sum_probs=60.8
Q ss_pred CeEEEEECCCCCEEEEe-c-----CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecC----
Q 010256 235 HINSISNNSDGETFISA-D-----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSK---- 304 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~-~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d---- 304 (514)
.+...+++|++++++.+ + -..|+++|+.+++..... +. ......++|.+++ ..|+....+
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~-------i~--~~~~~~~~W~~D~-~~~~Y~~~~~~~~ 195 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-------LE--RVKFSCMAWTHDG-KGMFYNAYPQQDG 195 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-------EE--EECSCCEEECTTS-SEEEEEECCCCSS
T ss_pred eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccc-------cc--cccccceEEcCCC-CEEEEEEeccccC
Confidence 34567889999999965 2 357999999977643221 11 1112468899998 555544322
Q ss_pred ------------CeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEE
Q 010256 305 ------------GSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILS 358 (514)
Q Consensus 305 ------------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~ 358 (514)
..+..+.+.+....+ ...++.... ...+..+..++++++++.
T Consensus 196 ~~~~~~~~~~~~~~v~~h~lgt~~~~d--~~v~~e~d~----------~~~~~~~~~s~d~~~l~i 249 (430)
T d1qfma1 196 KSDGTETSTNLHQKLYYHVLGTDQSED--ILCAEFPDE----------PKWMGGAELSDDGRYVLL 249 (430)
T ss_dssp CCSSSCCCCCCCCEEEEEETTSCGGGC--EEEECCTTC----------TTCEEEEEECTTSCEEEE
T ss_pred cccccccccCCcceEEEEECCCCcccc--ccccccccC----------CceEEeeeccCCcceeeE
Confidence 256777776644321 122222211 134667788999999874
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=93.54 E-value=1.9 Score=36.60 Aligned_cols=113 Identities=12% Similarity=0.110 Sum_probs=64.2
Q ss_pred cCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe-cCCeEEEEeccCCCc-eeeeeccCCC
Q 010256 199 FPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA-DDLRINLWNLEISNQ-SFNIVDVKPA 276 (514)
Q Consensus 199 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~-~~~~~~~~~~ 276 (514)
+....+|.+..|.+....+........+.+ .-...+..+.++.....|..+ .+.-|..++.+.... ...++...
T Consensus 147 fv~~k~G~v~q~~l~~~~~g~v~~~lvr~f--~~~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~-- 222 (353)
T d1h6la_ 147 MVTGKEGEFEQYELNADKNGYISGKKVRAF--KMNSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRA-- 222 (353)
T ss_dssp EEECSSSEEEEEEEEECTTSSEEEEEEEEE--ECSSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEEC--
T ss_pred EEEcCCceEEEEEEEcCCCCceeeEeeecc--CCCCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecc--
Confidence 667778899988832333332333344443 233568889999998899988 777666666542211 11111100
Q ss_pred cccccCCceEEEEEec--CCC-cEEEEEecCCeEEEEEcCCC
Q 010256 277 NMEDLTEVITSAEFHP--THC-NMLAYSSSKGSIRLIDMRQS 315 (514)
Q Consensus 277 ~~~~~~~~i~~v~~~p--~~~-~~l~~~~~dg~i~~wd~~~~ 315 (514)
.-......+-.++.-. ++. .+|++.-.+.+..+||..+.
T Consensus 223 ~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 223 DGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp SSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred cCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 0112345667776543 322 44555445889999998663
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.22 E-value=4.4 Score=35.48 Aligned_cols=56 Identities=16% Similarity=0.067 Sum_probs=35.9
Q ss_pred eeEEEEeeCCCCcEEEEe-e----CCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeeccCCCcc
Q 010256 115 INKIRWCQSANSALYLLS-T----NDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMANGGCG 186 (514)
Q Consensus 115 v~~i~~~~~~~~~~l~s~-~----~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 186 (514)
.....+++++++++++.+ + .--.+++.|+.+++.....-.. .....+.|.+|++.+
T Consensus 125 ~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~----------------~~~~~~~W~~D~~~~ 185 (430)
T d1qfma1 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER----------------VKFSCMAWTHDGKGM 185 (430)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE----------------ECSCCEEECTTSSEE
T ss_pred ceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc----------------ccccceEEcCCCCEE
Confidence 444456668898888864 2 2347999999999865422111 011167899998876
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=90.08 E-value=3.1 Score=31.86 Aligned_cols=153 Identities=14% Similarity=0.097 Sum_probs=83.7
Q ss_pred CeEEEEECCCCCEEEEe-cCCeEEEEeccCCCceeeeeccCCCcccc--cCCceEEEEEecCCCcEEEEEec-CCeEEEE
Q 010256 235 HINSISNNSDGETFISA-DDLRINLWNLEISNQSFNIVDVKPANMED--LTEVITSAEFHPTHCNMLAYSSS-KGSIRLI 310 (514)
Q Consensus 235 ~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~i~~v~~~p~~~~~l~~~~~-dg~i~~w 310 (514)
.|.+++.. +.+...+| ......+|-++ +....++.++.|-.+-. ....|..+.+-.-++.-|.++.. .|.++++
T Consensus 105 RI~S~~yd-dk~vvF~Gased~~~LYvie-gGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~ 182 (313)
T d2hu7a1 105 RILSGVDT-GEAVVFTGATEDRVALYALD-GGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVF 182 (313)
T ss_dssp EEEEEEEC-SSCEEEEEECSSCEEEEEEE-TTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEE
T ss_pred EEEEeeec-CceEEEecccCCceEEEEEe-CCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEe
Confidence 45555553 34455566 67778888887 45555555444433321 23455666554333345666666 7888887
Q ss_pred EcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEE-e---CCeEEEEEccCCCCceeeeeeccccc
Q 010256 311 DMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSR-D---YMTLKLWDINMDSGPVATFQVHEHLR 386 (514)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~---~~~i~iwd~~~~~~~~~~~~~~~~~~ 386 (514)
+...| .++.....+..+. +++ . .....-+|++. .....+......
T Consensus 183 tpkeG---------------------------S~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s--~~yerve~P~kd- 231 (313)
T d2hu7a1 183 DSGEG---------------------------SFSSASISPGMKV-TAGLETAREARLVTVDPRD--GSVEDLELPSKD- 231 (313)
T ss_dssp CCSSE---------------------------EEEEEEECTTSCE-EEEEEESSCEEEEEECTTT--CCEEECCCSSCH-
T ss_pred cCCCC---------------------------cccceeEccCcee-eeccCCCCceEEEEEeccc--CceeeeecCccc-
Confidence 76554 4566666666555 443 1 12222346553 222222222110
Q ss_pred cccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEe
Q 010256 387 PKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFG 426 (514)
Q Consensus 387 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 426 (514)
++.-.. ..|+-+-+.|++++++.+-.||.=++|.
T Consensus 232 -----~~sy~p-~~I~~~~Y~Pdd~L~iiakrdG~s~lF~ 265 (313)
T d2hu7a1 232 -----FSSYRP-TAITWLGYLPDGRLAVVARREGRSAVFI 265 (313)
T ss_dssp -----HHHHCC-SEEEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred -----ceeecc-eEEEeeeeCCCCcEEEEEecCCchheee
Confidence 000000 0123455899999989999999999987
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=89.51 E-value=6.4 Score=34.64 Aligned_cols=33 Identities=9% Similarity=0.167 Sum_probs=26.3
Q ss_pred CceEEEEEecCCCcEEEEEecCCeEEEEEcCCCc
Q 010256 283 EVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSA 316 (514)
Q Consensus 283 ~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~ 316 (514)
...++|+|.|++ ++|++--..|.|++++..++.
T Consensus 27 ~~P~~la~~pdg-~llVter~~G~i~~v~~~~g~ 59 (450)
T d1crua_ 27 NKPHALLWGPDN-QIWLTERATGKILRVNPESGS 59 (450)
T ss_dssp SSEEEEEECTTS-CEEEEETTTCEEEEECTTTCC
T ss_pred CCceEEEEeCCC-eEEEEEecCCEEEEEECCCCc
Confidence 467899999999 777765457999999877765
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.84 E-value=6.3 Score=33.63 Aligned_cols=120 Identities=10% Similarity=0.067 Sum_probs=64.6
Q ss_pred ceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccccccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeCCe
Q 010256 284 VITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDTHSKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDYMT 363 (514)
Q Consensus 284 ~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~~~ 363 (514)
...-++.++.. .+++.|+.++ ++|..+..-... ++...... ..........|..++|+.+ .|+...++.
T Consensus 38 ~~~LLAVsn~~-GLl~aa~~~~-l~V~~t~~l~~~------~~~~~~~~-~~~~~~~ip~v~~vafs~d--~l~v~~~~~ 106 (381)
T d1xipa_ 38 SLQNLDISNSK-SLFVAASGSK-AVVGELQLLRDH------ITSDSTPL-TFKWEKEIPDVIFVCFHGD--QVLVSTRNA 106 (381)
T ss_dssp CCBCEEEETTT-TEEEEEETTE-EEEEEHHHHHHH------HHSSSCCC-CCSEEEECTTEEEEEEETT--EEEEEESSE
T ss_pred ccceEEEeCCC-CEEEEECCCE-EEEEEHHHHHHH------hhccCCCC-cceeccCCCCeEEEEeeCC--EEEEEeCCC
Confidence 34567778876 5777777764 567665331110 00000000 0001111235888999844 677666677
Q ss_pred EEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCce
Q 010256 364 LKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSA 432 (514)
Q Consensus 364 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 432 (514)
+..++... -........-... +.++.++| ..++....+|.+.++++..++.
T Consensus 107 l~~~~~~~-l~~~~~~~~~~~~---------------~~~~~~~p--~~~~l~~~~~~~~~~~l~~~~~ 157 (381)
T d1xipa_ 107 LYSLDLEE-LSEFRTVTSFEKP---------------VFQLKNVN--NTLVILNSVNDLSALDLRTKST 157 (381)
T ss_dssp EEEEESSS-TTCEEEEEECSSC---------------EEEEEECS--SEEEEEETTSEEEEEETTTCCE
T ss_pred EEEEEeec-ccccccccccccc---------------ccceecCC--ceeEEEecCCCEEEEEeccCcc
Confidence 88888765 2222222111111 22566655 4566677789999999987743
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=88.60 E-value=3.1 Score=38.23 Aligned_cols=55 Identities=15% Similarity=0.152 Sum_probs=38.5
Q ss_pred CeEEEEEccCCCCceeeeeeccccccccccccccCCccceeeEEEcCCCCEEEEEeCCCcEEEEecCCCcee
Q 010256 362 MTLKLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 362 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
|.+.-||+.+ ++.+-......... .-..+-.|.++++|+.||.++.+|.++|+.+
T Consensus 457 G~l~AiD~~t-Gk~~W~~~~~~p~~----------------gg~lstagglVF~G~~dg~l~A~Da~TGe~L 511 (573)
T d1kb0a2 457 GRLLAWDPVA-QKAAWSVEHVSPWN----------------GGTLTTAGNVVFQGTADGRLVAYHAATGEKL 511 (573)
T ss_dssp EEEEEEETTT-TEEEEEEEESSSCC----------------CCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ccEEEeCCCC-CceEeeecCCCCCC----------------CceEEEcCCEEEEECCCCeEEEEECCCCcEe
Confidence 6788888887 76666554433211 1123346788999999999999999999654
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.28 E-value=5.6 Score=32.43 Aligned_cols=131 Identities=7% Similarity=0.123 Sum_probs=74.1
Q ss_pred cCeEEEEECCCCCEEEE-e---c----CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEec--CCCcEEEEEec
Q 010256 234 YHINSISNNSDGETFIS-A---D----DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHP--THCNMLAYSSS 303 (514)
Q Consensus 234 ~~v~~~~~~~~~~~l~s-~---~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p--~~~~~l~~~~~ 303 (514)
..|-.-..+++.++++. | . .|.+.+|..+..... .+++|.+....+.+.- ....+|+.+..
T Consensus 148 ~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ---------~ieGhaa~F~~~~~~g~~~~~~lf~fa~r 218 (327)
T d1utca2 148 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ---------PIEGHAASFAQFKMEGNAEESTLFCFAVR 218 (327)
T ss_dssp CEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEE---------EECCSEEEEEEECCTTCSSCEEEEEEEEE
T ss_pred ceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCc---------cccceeeeeEEEEcCCCCCCceEEEEEEC
Confidence 45677778888888764 2 2 477889998844322 3566655444443321 11124433332
Q ss_pred ---CCeEEEEEcCCCcccccc--ccceeccCCCCccceeeccccceeEEEEecCCCEEEEEeC-CeEEEEEccCCCCcee
Q 010256 304 ---KGSIRLIDMRQSALCDTH--SKLFEEQEAPGTRSFFTEIIASISDIKFARNGRHILSRDY-MTLKLWDINMDSGPVA 377 (514)
Q Consensus 304 ---dg~i~~wd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-~~i~iwd~~~~~~~~~ 377 (514)
.+.+++.++......... .+..+..-.|. .-.+-.-++..|+....++.-+. |.|++||+.+ +.++.
T Consensus 219 ~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppe------a~~DFPvamqvs~kygiiyviTK~G~i~lyDleT-gt~i~ 291 (327)
T d1utca2 219 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE------AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET-GTCIY 291 (327)
T ss_dssp ETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTT------CTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT-CCEEE
T ss_pred CCCCcEEEEEEcCCCccCCCCCcceeEEEECCcc------ccCCcEEEEEeeccCCEEEEEecCcEEEEEEccc-ccEEE
Confidence 367888888663221110 11111111110 11245567888887777777665 9999999998 77665
Q ss_pred eee
Q 010256 378 TFQ 380 (514)
Q Consensus 378 ~~~ 380 (514)
.-+
T Consensus 292 ~nR 294 (327)
T d1utca2 292 MNR 294 (327)
T ss_dssp EEE
T ss_pred Eee
Confidence 544
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=88.12 E-value=6.6 Score=33.00 Aligned_cols=34 Identities=6% Similarity=0.049 Sum_probs=26.6
Q ss_pred CCceEEEEEecCCCcEEEEEecCCeEEEEEcCCC
Q 010256 282 TEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQS 315 (514)
Q Consensus 282 ~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~ 315 (514)
-...+.|+++|++..++++-+..++|+.|++...
T Consensus 205 l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~ 238 (340)
T d1v04a_ 205 FDFANGINISPDGKYVYIAELLAHKIHVYEKHAN 238 (340)
T ss_dssp ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred CCccceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence 3457899999998556666667899999998754
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.97 E-value=9.7 Score=34.79 Aligned_cols=58 Identities=5% Similarity=-0.013 Sum_probs=38.4
Q ss_pred CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccc
Q 010256 253 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT 320 (514)
Q Consensus 253 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 320 (514)
.|.|.-+|+.+++...+.... .++.+-..+..+ .+++.|+.||.++-+|.++|+.+++
T Consensus 465 ~G~l~AiD~~TG~i~W~~~~~---------~p~~~g~lstag-glVF~Gt~dg~l~A~Da~TGe~LW~ 522 (582)
T d1flga_ 465 VGSLRAMDPVSGKVVWEHKEH---------LPLWAGVLATAG-NLVFTGTGDGYFKAFDAKSGKELWK 522 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEES---------SCCCSCCEEETT-TEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCeEEEEcCCCCcEEeecCCC---------CCCccceeEEcC-CeEEEeCCCCeEEEEECCCCcEeEE
Confidence 467888888887766543211 111111123345 5777899999999999999998644
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=86.75 E-value=12 Score=34.37 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=22.8
Q ss_pred cCCCCEEEEEeCCCcEEEEecCCCcee
Q 010256 407 SGDGGRVATGSYSNLFRVFGCSEGSAE 433 (514)
Q Consensus 407 s~~~~~l~s~~~dg~i~iwd~~~~~~~ 433 (514)
+..|.+++.|+.||.++-+|.++|+.+
T Consensus 481 sTagglVF~G~~Dg~l~A~Da~TGe~L 507 (596)
T d1w6sa_ 481 ATAGDLVFYGTLDGYLKARDSDTGDLL 507 (596)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred EecCCEEEEECCCCeEEEEECCCCcEe
Confidence 346778889999999999999999654
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=86.61 E-value=5.5 Score=30.49 Aligned_cols=156 Identities=10% Similarity=0.081 Sum_probs=85.2
Q ss_pred ceeEEEEeeCCCCcEEEEeeCCCeEEEEEcCccEEEEEeeccCCCccccCCcceecccccCCceeecc--CCCccccc--
Q 010256 114 KINKIRWCQSANSALYLLSTNDKTIKLWKVQEKKVKKVFDWNVHPEKAAGNGPIFGSHVSAIPKSYMA--NGGCGERN-- 189 (514)
Q Consensus 114 ~v~~i~~~~~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~l~~~-- 189 (514)
.|.++++ .+....++|+......+|-++.|++......+. ..|-. .+..+.=.
T Consensus 105 RI~S~~y---ddk~vvF~Gased~~~LYviegGklrkL~~vPp--------------------FsFVtDI~~d~I~G~g~ 161 (313)
T d2hu7a1 105 RILSGVD---TGEAVVFTGATEDRVALYALDGGGLRELARLPG--------------------FGFVSDIRGDLIAGLGF 161 (313)
T ss_dssp EEEEEEE---CSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--------------------CEEEEEEETTEEEEEEE
T ss_pred EEEEeee---cCceEEEecccCCceEEEEEeCCceeeeccCCC--------------------cceEEeccCCeEEEEee
Confidence 4666666 445678889888899999999999887766552 11111 11111000
Q ss_pred cCCCCCCcccCCCCCCcEEeceeeccccccccccccccccccCccCeEEEEECCCCCEEEEe--c--CCeEEEEeccCCC
Q 010256 190 FGCASNDSSFPPGGVSSLRLPVVVTSQETNLVAGCRRIYAHAHDYHINSISNNSDGETFISA--D--DLRINLWNLEISN 265 (514)
Q Consensus 190 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~--~--d~~i~iwd~~~~~ 265 (514)
......+++.+--..|.+++++ ...+.++.....+..+. +++ . .....-+|++.+.
T Consensus 162 ~~g~~~sfF~adl~SG~lri~t-------------------pkeGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~ 221 (313)
T d2hu7a1 162 FGGGRVSLFTSNLSSGGLRVFD-------------------SGEGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGS 221 (313)
T ss_dssp EETTEEEEEEEETTTEEEEEEC-------------------CSSEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCC
T ss_pred ecCCcceEEEEecccCCEEEec-------------------CCCCcccceeEccCcee-eeccCCCCceEEEEEecccCc
Confidence 0000011222222355555544 33456677777777766 554 2 2333345776433
Q ss_pred ceeeeeccCCCcccc-cCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCcc
Q 010256 266 QSFNIVDVKPANMED-LTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSAL 317 (514)
Q Consensus 266 ~~~~~~~~~~~~~~~-~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~ 317 (514)
- .-+++....+.. ..-.|+-+-+.|++ ++++.+-.||.-++|. +|+.
T Consensus 222 y--erve~P~kd~~sy~p~~I~~~~Y~Pdd-~L~iiakrdG~s~lF~--nGk~ 269 (313)
T d2hu7a1 222 V--EDLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFI--DGER 269 (313)
T ss_dssp E--EECCCSSCHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEE--TTEE
T ss_pred e--eeeecCcccceeecceEEEeeeeCCCC-cEEEEEecCCchheee--cceE
Confidence 2 211111111111 12345566789998 8888999999999987 4554
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=86.60 E-value=5.4 Score=36.54 Aligned_cols=57 Identities=9% Similarity=0.138 Sum_probs=35.8
Q ss_pred CeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccc
Q 010256 254 LRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT 320 (514)
Q Consensus 254 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 320 (514)
|.+.-||+.+++...+.... .+..+-..+-.+ .++++|+.||.++.+|.++|+.+++
T Consensus 457 G~l~AiD~~tGk~~W~~~~~---------~p~~gg~lstag-glVF~G~~dg~l~A~Da~TGe~LW~ 513 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHV---------SPWNGGTLTTAG-NVVFQGTADGRLVAYHAATGEKLWE 513 (573)
T ss_dssp EEEEEEETTTTEEEEEEEES---------SSCCCCEEEETT-TEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ccEEEeCCCCCceEeeecCC---------CCCCCceEEEcC-CEEEEECCCCeEEEEECCCCcEeEE
Confidence 56777787776655443111 111111122345 5777899999999999999998543
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=84.63 E-value=14 Score=33.51 Aligned_cols=58 Identities=9% Similarity=0.113 Sum_probs=36.6
Q ss_pred CCeEEEEeccCCCceeeeeccCCCcccccCCceEEEEEecCCCcEEEEEecCCeEEEEEcCCCccccc
Q 010256 253 DLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLAYSSSKGSIRLIDMRQSALCDT 320 (514)
Q Consensus 253 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 320 (514)
.|.|.-+|+++++...+..... ....+. ..-.+ .++++|+.||.++-+|.++|+.+++
T Consensus 443 ~G~l~AiD~~TG~~~W~~~~~~----~~~~g~-----l~Tag-glVf~G~~dg~l~A~Da~tGe~lW~ 500 (571)
T d2ad6a1 443 MGQIRAFDLTTGKAKWTKWEKF----AAWGGT-----LYTKG-GLVWYATLDGYLKALDNKDGKELWN 500 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEESS----CCCSBC-----EEETT-TEEEEECTTSEEEEEETTTCCEEEE
T ss_pred cccEEEeccCCCceeeEcCCCC----CCCcce-----eEecC-CEEEEECCCCeEEEEECCCCcEEEE
Confidence 3578888888777655431110 011111 12234 4777899999999999999998643
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=84.54 E-value=15 Score=33.61 Aligned_cols=78 Identities=9% Similarity=0.085 Sum_probs=39.2
Q ss_pred CcEEEEecCCCceeeeeecCCCcceeEEEECCCCCceeecCCCCeEEE---eeCCCCCccccCCcccccccceEEEEEcC
Q 010256 420 NLFRVFGCSEGSAESTTLEASKNPMRRQVQTPSRPSRPLGSLSGVVRR---VKGADNSALDANGNAFDFSMKLLHLAWHP 496 (514)
Q Consensus 420 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~v~i---~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 496 (514)
|.|.-||+.+++..-.... ..+...-..+-.+.++..|+.||.++- ..|..+++..+.. ...-.=+.|..
T Consensus 453 G~l~A~D~~TG~~~W~~~~--~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~-----~~~a~P~tY~~ 525 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKME--RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPS-----GAIGYPMTYTH 525 (596)
T ss_dssp EEEEEECTTTCCEEEEEEE--SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS-----CCCSCCEEEEE
T ss_pred ceEEEEeCCCCceecccCC--CCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCC-----CcccCCeEEEE
Confidence 4577777777743322111 112222222335667778999999998 3455555332222 11112244556
Q ss_pred CCC-EEEEE
Q 010256 497 SEN-SIACA 504 (514)
Q Consensus 497 d~~-~l~~~ 504 (514)
||+ +||+.
T Consensus 526 dGkQYvav~ 534 (596)
T d1w6sa_ 526 KGTQYVAIY 534 (596)
T ss_dssp TTEEEEEEE
T ss_pred CCEEEEEEE
Confidence 776 45543
|