Citrus Sinensis ID: 010258

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510----
Protein Sequence
MGSSGSKACGNEPTTASSSKKARSSRANNWLFQSSCLGSDTGTASGSRHTRSQRDEENGGNQSETESDELKIECDRKEKDEIDCISNSDELDGWGEANITSVNGNGGTGSSSARSSSNPCRFLSRFSFIPGNISFRLSRAASLGSSRGYNTDEHGRSSSNFPHNLEEIQNAARDDGDGVGNNRVGIGGNVCSPRVFNELDNVGSRVSDRRIGAREPVERNVRFSRTLSVGRLRDRVLRRSSLSDITFCPLQQERLVRDANQRSARNAFGGDTEILSSTPEGNGNGVTSPLTSGYPPSSRSSSLFGIQDHEVETSRSREARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHERSCILSGQHRTGRCTCRVSNRDANSGDETGTRASISRIVMLAEALFEVLDEIHQQSVVLSSRPSMSSIGSIPAPNEVVESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPSEN
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHccccEEEEccccccccccccccccccccccccEEEEcccccccccccHHHHHcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccHHcccccccccccccEEEEEEEccccHHHHHHcccccccccEcccHHcccccccccccHHHHcccccEcccccccccccccccccccccccccccccccccEccccccHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHcccccccccccccEEEccccccccEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHcccEEEEEcccccccccccccEEEEEccccccEEEEEccccHHHHHHccHHHHHHcccccccccccHHcccccccc
Coil and Loop (DISEMBL)
mgssgskacgnepttassskkarssrannwlfqssclgsdtgtasgsrhtrsqrdeenggnqsetesdeLKIECdrkekdeidcisnsdeldgwgeanitsvngnggtgsssarsssnpcrflsrfsfipgniSFRLSRAaslgssrgyntdehgrsssnfphNLEEIQNAarddgdgvgnnrvgiggnvcsprvfneldnvgsrvsdrrigarepvernvrfsrtlsvgrlrdrvlrrsslsditfcplqqeRLVRDANQRsarnafggdteilsstpegngngvtspltsgyppssrssslfgiqdhevetsrsrEARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRfenlsgherscilsgqhrtgrctcrvsnrdansgdetgtraSISRIVMLAEALFEVLDEIHQQsvvlssrpsmssigsipapnevveslpvkLYTKSQKYQNEEVAQCYICLLeyeegdsvrvlpchhefHKTCVDKWLKEIHrvcplcrgdickpdslpsen
Flexible Loop (DISEMBL)
mgssgskacgnepttassskkarssrANNWLfqssclgsdtgtasgsrhtrsqrdeenggnqsetesdelkiECDRKEKDEIDCIsnsdeldgwgeANITSVNGNGGTGSSSARSSSNPCRFLSRFSFIPGNISFRLSRAASLGSSRGYNTDEHGRSSSNFPHNLEEIQNAARDDGDGVGNNRVGiggnvcsprvfneldnvgsrvsdrrigarepvernvrfsrtlsvgrlrdrvlrrsslsditfcplqqerlvrdanQRSARNafggdteilsstpegngNGVTSPLTSGYPPSSRSSSLFGIQDHEvetsrsrearyhdllehrsnflerrrrIRSQVRALQRLgsrfenlsgherscilsgqhrtgrctcrvsnrdansgdetgtrasISRIVMLAEALFEVLDEIHQQSVVLssrpsmssigsipapnevvESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPlcrgdickpdslpsen
Low Complexity Region (SEG)
MGSSGSKACGNEPTTassskkarssraNNWLFQSSCLGSDTGTASGSRHTRSQRDEENGGNQSETESDELKIECDRKEKDEIDCISNSDELDGWGEAnitsvngnggtgsssarsssnPCRFLSRFSFIPGNISFrlsraaslgssrgYNTDEHGRSSSNFPHNLEEIQNAArddgdgvgnnrvgiggnvCSPRVFNELDNVGSRVSDRRIGAREPVERNVRFSRTlsvgrlrdrvlrrsslsdITFCPLQQERLVRDANQRSARNAFGGDTEILSSTPEGNGNGVTSPLTSGYPPssrsssLFGIQDHEVETSRSREARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHERSCILSGQHRTGRCTCRVSNRDANSGDETGTRASISRIVMLAEALFEVLDEIHQQsvvlssrpsmssigsipAPNEVVESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPSEN
Disordered region (IsUnstruct)
***********************************************************************************************************************CRFLSRFSFIPGNISFRL********************************************NRVGIGGNVCSPRVFNELDNVG*****************VRFSRTLSVGRLRDRVLRRSSLSDITFCPLQ*************************************************************************************************************SCILSGQHRTGRCTCR****************SISRIVMLAEALFEVLDEIHQQSVV*******************VESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDIC*********
Disordered Region (DISOPRED)
*****************************************************************************************************************************************************************************************************************************************************TFCP**********************************************************************************************************************************************ASISRIVMLAEALFEVLDEIHQQS*********************VESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCR*************
Disordered Region (DISEMBL)
**************************ANNWLFQSSCLGS*******************************KIECDRKEKDEIDCISNSDELDGWGEANITSVNG**************PCRFLSRFSFIPGNISFRLSRAASLGSSRGYNTDEHGRSSSNFPHNLEEIQNAARDDGDGVGNNRVGIGGNVCSPRVFNELDNVGSRVSDRRIGAREPVERNVRFSRTLSVGRLRDRVLRRSSLSDITFCPLQQERLVRDANQRSARNAFGGDTEILSSTPEGNGNGVTSPLTSGYPPSSRSSSLFGIQDHEVETSRSREARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHERSCILSGQHRTGRCTCRVSN***********RASISRIVMLAEALFEVLDEIHQQS************GSIPAPNEVVESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPSEN
Disordered Region (DISPRO)
************************************************************************EC***********************************************FLSRFSFIPGNISFRLS***************************************************VCSPRVFNELDNVGSRVSDRRIGAREPVERNVRFSRTLSVGRLRDRVLRRSSLSDITFCPLQQERLVRD*********************************************FGIQDHEVETSRSREARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHERSCILSGQHRTGRCTCRVSNRDA****ETGTRASISRIVMLAEALFEVLDEIHQQSVVLSSRPSM***GSIPAPNEVVESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPD******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSSGSKACGNEPTTASSSKKARSSRANNWLFQSSCLGSDTGTASGSRHTRSQRDEENGGNQSETESDELKIECDRKEKDEIDCISNSDELDGWGEANITSVNGNGGTGSSSARSSSNPCRFLSRFSFIPGNISFRLSRAASLGSSRGYNTDEHGRSSSNFPHNLEEIQNAARDDGDGVGNNRVGIGGNVCSPRVFNELDNVGSRVSDRRIGAREPVERNVRFSRTLSVGRLRDRVLRRSSLSDITFCPLQQERLVRDANQRSARNAFGGDTEILSSTPEGNGNGVTSPLTSGYPPSSRSSSLFGIQDHEVETSRSREARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHERSCILSGQHRTGRCTCRVSNRDANSGDETGTRASISRIVMLAEALFEVLDEIHQQSVVLSSRPSMSSIGSIPAPNEVVESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPSEN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	514	2.2.26 [Sep-21-2011]
Q06003	461	Protein goliath OS=Drosop	no	no	0.210	0.234	0.344	1e-12
Q67YI6	411	RING-H2 finger protein AT	no	no	0.136	0.170	0.425	9e-12
Q9SJJ7	237	RING-H2 finger protein AT	no	no	0.128	0.278	0.492	1e-11
P0CH30	338	E3 ubiquitin-protein liga	N/A	no	0.143	0.218	0.402	1e-11
Q9ULK6	438	RING finger protein 150 O	yes	no	0.153	0.180	0.375	1e-11
Q5DTZ6	437	RING finger protein 150 O	yes	no	0.153	0.180	0.387	2e-11
Q5M974	156	E3 ubiquitin-protein liga	no	no	0.136	0.448	0.459	2e-11
Q8RXX9	398	E3 ubiquitin-protein liga	no	no	0.134	0.173	0.445	2e-11
Q6Y290	419	E3 ubiquitin-protein liga	no	no	0.143	0.176	0.4	2e-11
Q8VEM1	419	E3 ubiquitin-protein liga	no	no	0.143	0.176	0.4	2e-11

>sp|Q06003|GOLI_DROME Protein goliath OS=Drosophila melanogaster GN=gol PE=2 SV=3

 Score = 75.1 bits (183), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 68/119 (57%), Gaps = 11/119 (9%)

Query: 392 ASISRIVMLAEALFEVLDEIHQQSVVLSSRPSMS-SIGSIPAPNEVVESLPVKLYTKSQK 450
            SIS IV++  +L  ++    Q+   + ++   S ++ S      V +   +K+ TK+ K
Sbjct: 238 VSISFIVLMIISLVWLIFYYIQRFRYMQAKDQQSRNLCS------VTKKAIMKIPTKTGK 291

Query: 451 YQNEEVAQ---CYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICK 506
           + +E+      C IC+  Y+  D++R+LPC HEFHK C+D WL E HR CP+C+ D+ K
Sbjct: 292 FSDEKDLDSDCCAICIEAYKPTDTIRILPCKHEFHKNCIDPWLIE-HRTCPMCKLDVLK 349

Regulation of gene expression during embryonic mesoderm formation. Putative role as transcription factor.
Drosophila melanogaster (taxid: 7227)

>sp|Q67YI6|ATL65_ARATH RING-H2 finger protein ATL65 OS=Arabidopsis thaliana GN=ATL65 PE=2 SV=2

 Score = 72.4 bits (176), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 10/80 (12%)

Query: 434 NEVVESLPVKLYTKSQKYQNEEVAQ--------CYICLLEYEEGDSVRVLP-CHHEFHKT 484
           + V+++LP+ LY+ +       V +        C +CLLE+EEGD VR LP C H FH  
Sbjct: 123 DSVIKTLPLFLYSAAACTGKPAVGKTSAANCRDCAVCLLEFEEGDYVRTLPLCFHAFHLE 182

Query: 485 CVDKWLKEIHRVCPLCRGDI 504
           C+D+WL+  H  CPLCR  I
Sbjct: 183 CIDEWLRS-HPNCPLCRTAI 201

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJJ7|ATL57_ARATH RING-H2 finger protein ATL57 OS=Arabidopsis thaliana GN=ATL57 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 48/71 (67%), Gaps = 5/71 (7%)

Query: 434 NEVVESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLP-CHHEFHKTCVDKWLKE 492
           ++ V SLPV  YTK+ K +NE+   C ICL ++EEG++V+V+P C H FH  CVD WL  
Sbjct: 118 SQAVRSLPVYRYTKAAKQRNED---CVICLSDFEEGETVKVIPHCGHVFHVDCVDTWLSS 174

Query: 493 IHRVCPLCRGD 503
            +  CPLCR +
Sbjct: 175 -YVTCPLCRSN 184

Arabidopsis thaliana (taxid: 3702)

>sp|P0CH30|RING1_GOSHI E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 3/77 (3%)

Query: 428 GSIPAPNEVVESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVD 487
           G+ PA    +E+LP+   TKS    N E  QC +C+ ++EEG   + +PC H +HK C+ 
Sbjct: 195 GTPPASKSAIEALPLVNITKSNL--NSEFNQCAVCMDDFEEGTEAKQMPCKHLYHKDCLL 252

Query: 488 KWLKEIHRVCPLCRGDI 504
            WL E+H  CP+CR ++
Sbjct: 253 PWL-ELHNSCPVCRHEL 268

E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Promotes polyubiquitination of target proteins.

Gossypium hirsutum (taxid: 3635)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9ULK6|RN150_HUMAN RING finger protein 150 OS=Homo sapiens GN=RNF150 PE=2 SV=2

 Score = 71.6 bits (174), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 432 APNEVVESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLK 491
           A  + +  L ++   K  K    +   C +C+  Y+  D VR+LPC H FHK+CVD WL 
Sbjct: 251 AAKKAISKLQIRTIKKGDKETESDFDNCAVCIEGYKPNDVVRILPCRHLFHKSCVDPWLL 310

Query: 492 EIHRVCPLCRGDICKPDSLP 511
           + HR CP+C+ +I K   +P
Sbjct: 311 D-HRTCPMCKMNILKALGIP 329

Homo sapiens (taxid: 9606)

>sp|Q5DTZ6|RN150_MOUSE RING finger protein 150 OS=Mus musculus GN=Rnf150 PE=2 SV=2

 Score = 71.6 bits (174), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 432 APNEVVESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLK 491
           A  + +  L V+   K  K    +   C +C+  Y+  D VR+LPC H FHK+CVD WL 
Sbjct: 250 AAKKAISKLQVRTIRKGDKETESDFDNCAVCIEGYKPNDVVRILPCRHLFHKSCVDPWLL 309

Query: 492 EIHRVCPLCRGDICKPDSLP 511
           + HR CP+C+ +I K   +P
Sbjct: 310 D-HRTCPMCKMNILKALGIP 328

Mus musculus (taxid: 10090)

>sp|Q5M974|RN181_XENTR E3 ubiquitin-protein ligase RNF181 OS=Xenopus tropicalis GN=rnf181 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/74 (45%), Positives = 47/74 (63%), Gaps = 4/74 (5%)

Query: 431 PAPNEVVESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWL 490
           PA  +VVESLP    T  Q    +   +C +CLLE+EEG++VR LPC H FH +C+  WL
Sbjct: 54  PAAKKVVESLPKVTVTPEQA---DAALKCPVCLLEFEEGETVRQLPCEHLFHSSCILPWL 110

Query: 491 KEIHRVCPLCRGDI 504
            + +  CPLCR ++
Sbjct: 111 GKTNS-CPLCRHEL 123

E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.

Xenopus tropicalis (taxid: 8364)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8RXX9|ATL6_ARATH E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6 PE=1 SV=2

 Score = 70.9 bits (172), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 49/74 (66%), Gaps = 5/74 (6%)

Query: 436 VVESLPVKLYT--KSQKYQNEEVAQCYICLLEYEEGDSVRVLP-CHHEFHKTCVDKWLKE 492
           VVE+ P  LY+  K+QK    E+ +C ICL E+E+ +++R+LP C H FH  C+D WL E
Sbjct: 104 VVETFPTFLYSDVKTQKLGKGEL-ECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWL-E 161

Query: 493 IHRVCPLCRGDICK 506
            H  CP+CR ++ +
Sbjct: 162 AHVTCPVCRANLAE 175

E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8 in vitro. May be involved in the plant C/N response and the early steps of the plant defense signaling pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6Y290|GOLI_RAT E3 ubiquitin-protein ligase RNF130 OS=Rattus norvegicus GN=Rnf130 PE=1 SV=1

 Score = 70.9 bits (172), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 1/75 (1%)

Query: 432 APNEVVESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLK 491
           A  + +  L  +   K  K  + +   C +C+  Y++ D VRVLPC H FHK+CVD WL 
Sbjct: 237 AAKKAISKLTTRTVKKGDKETDPDFDHCAVCIESYKQNDVVRVLPCKHVFHKSCVDPWLS 296

Query: 492 EIHRVCPLCRGDICK 506
           E H  CP+C+ +I K
Sbjct: 297 E-HCTCPMCKLNILK 310

Acts as an E3 ubiquitin-protein ligase (By similarity). May have a role during the programmed cell death of hematopoietic cells.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8VEM1|GOLI_MOUSE E3 ubiquitin-protein ligase RNF130 OS=Mus musculus GN=Rnf130 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 1/75 (1%)

Query: 432 APNEVVESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLK 491
           A  + +  L  +   K  K  + +   C +C+  Y++ D VRVLPC H FHK+CVD WL 
Sbjct: 237 AAKKAISKLTTRTVKKGDKETDPDFDHCAVCIESYKQNDVVRVLPCKHVFHKSCVDPWLS 296

Query: 492 EIHRVCPLCRGDICK 506
           E H  CP+C+ +I K
Sbjct: 297 E-HCTCPMCKLNILK 310

Acts as an E3 ubiquitin-protein ligase (By similarity). May have a role during the programmed cell death of hematopoietic cells.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	514
356560853	581	PREDICTED: uncharacterized protein LOC10	0.984	0.870	0.546	1e-147
296085485	498	unnamed protein product [Vitis vinifera]	0.869	0.897	0.596	1e-146
224074629	588	predicted protein [Populus trichocarpa]	0.675	0.590	0.762	1e-143
356495268	567	PREDICTED: uncharacterized protein LOC10	0.902	0.818	0.564	1e-143
255552350	554	ring finger protein, putative [Ricinus c	0.931	0.864	0.572	1e-142
449465663	587	PREDICTED: uncharacterized protein LOC10	0.937	0.821	0.538	1e-141
356529795	567	PREDICTED: uncharacterized protein LOC10	0.918	0.832	0.554	1e-139
357484513	560	RING finger protein [Medicago truncatula	0.926	0.85	0.562	1e-138
449512895	532	PREDICTED: uncharacterized LOC101213468,	0.852	0.823	0.566	1e-138
356560617	578	PREDICTED: uncharacterized protein LOC10	0.982	0.873	0.535	1e-137

>gi|356560853|ref|XP_003548701.1| PREDICTED: uncharacterized protein LOC100800896 [Glycine max]

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 320/586 (54%), Positives = 389/586 (66%), Gaps = 80/586 (13%)

Query: 1   MGSSGSKACGNEPTTASSSKKA----RSSRANNW-LFQSSCLGSDTGTA-SGSRHTRSQR 54
           MGS+GSKA  +   ++SSS  +    R  R+    +FQS CLG+ +G+  S +      +
Sbjct: 1   MGSNGSKATSSSFGSSSSSSSSSGSLRKGRSKGLKVFQSCCLGTTSGSHDSDNEDQVCDQ 60

Query: 55  DEENGGNQSE-----TESDELKIECDRKE-KDEIDCISNSDELDGWGEANITSVNGNGGT 108
           ++ NG + +      T+SDE+K E  RK    E+ C+ ++ +LDGWGE +I   N +  T
Sbjct: 61  NKVNGSDVTYADGNGTDSDEVKTESFRKVIAGEMTCVPSNIDLDGWGETSIP--NTSSRT 118

Query: 109 GSSSARSSS----NPCRF-LSRFSFIPGNISFRLSRAASLGSSRGY-----------NTD 152
           GS S  SSS    NP    LSRFS IPGN+SFRLSR  SLGSSR             N D
Sbjct: 119 GSISVHSSSTHSLNPTSHCLSRFSLIPGNVSFRLSRTTSLGSSRPRPVSSANLSIFDNED 178

Query: 153 EH-----------GRSSSNFPHNL------EEIQNAARDDGDGVGNNRV---GIGGN--- 189
           EH            RS +    NL       +I     +D      + V   G+ GN   
Sbjct: 179 EHNLNPGSPGRLINRSETQQCSNLLPASFSNQIHAQCHEDASNNSRSNVPTSGVVGNLQS 238

Query: 190 -----VC----------SPRVFNELDNV--GSRVSDRRIGAREPVERNVRFSRTLSVGRL 232
                VC          S R+  + +NV   +R  D+RIGAREPVERNVRFSRTLSVGRL
Sbjct: 239 YPTDGVCARERPDVNLFSLRIQTDTENVDNDTRHIDQRIGAREPVERNVRFSRTLSVGRL 298

Query: 233 RDRVLRRSSLSDITFCPLQQERLVRDANQRSA----RNAFGGDTEILSSTPEGNGNGVTS 288
           RDRVLR+S+LSD+TF PLQQER +RDA+  S     R A  GD+ +  S      +   +
Sbjct: 299 RDRVLRQSTLSDLTFFPLQQERELRDASLPSQDIIDRQAVEGDSRVSPS-----DHSTIN 353

Query: 289 PLTSGYPPSSRSSSLFGIQDHEVETSRSREARYHDLLEHRSNFLERRRRIRSQVRALQRL 348
             TS YPPSS S+S+F IQD+EVETSR RE RY DLLEHRSNFLERRRRIR QV ALQRL
Sbjct: 354 SSTSRYPPSSMSNSIFSIQDYEVETSRLREGRYQDLLEHRSNFLERRRRIRPQVHALQRL 413

Query: 349 GSRFENLSGHERSCILSGQHRTGRCTCRVSNRDANSGDETGTRASISRIVMLAEALFEVL 408
           GSRFENLSGH+R+C+LSGQHR GRCTCR++NR+ NS D+TG RA+ISRIVMLAEALFEVL
Sbjct: 414 GSRFENLSGHDRTCVLSGQHRNGRCTCRINNRNTNSNDDTGARANISRIVMLAEALFEVL 473

Query: 409 DEIHQQSVVLSSRPSMSSIGSIPAPNEVVESLPVKLYTKSQKYQNEEVAQCYICLLEYEE 468
           DEIH QSVVLSSRPS+SSIG +PAPN+VV+SLPVKLY K  K+Q E+ AQCYICL+EYE+
Sbjct: 474 DEIHLQSVVLSSRPSVSSIGPVPAPNDVVDSLPVKLYEKLHKHQ-EDAAQCYICLVEYED 532

Query: 469 GDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPSEN 514
           GD++RVLPCHHEFH+TC+DKWLKEIHRVCPLCRGDIC  DS P+EN
Sbjct: 533 GDNMRVLPCHHEFHRTCIDKWLKEIHRVCPLCRGDICISDSTPTEN 578

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085485|emb|CBI29217.3| unnamed protein product [Vitis vinifera]

 Score =  526 bits (1354), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 305/511 (59%), Positives = 353/511 (69%), Gaps = 64/511 (12%)

Query: 31  LFQSSCLGSDTGTASGSRHTRSQR--DEENGGN-----QSETESDELKIECDRKEK---- 79
           +F SSCL   +G+        S    ++ENG N     Q+ETESD+LK  C RK K    
Sbjct: 25  VFHSSCLRPPSGSHHSDSDNDSDDHPNKENGCNGPCTDQNETESDQLKSGCFRKVKVEQP 84

Query: 80  DEIDCISNSDELDGWGEANITSVNGNGGTGSSSARS--SSNPC-RFLSRFSFIPGNISFR 136
           DE+  IS++  L  W +AN T  +   G+ S+ A S  S NP  RFLSRFS IPGNISFR
Sbjct: 85  DEMPSISSNVGLQEWDQANFTRTSSRAGSSSTRASSTQSLNPSSRFLSRFSLIPGNISFR 144

Query: 137 LSRAASLGSSRGYNTDEHGRS-------------SSNFPHNLEEIQNAARDDGDGVGNNR 183
           LSRA+SLGSSR Y       +             SS F  N+         D   +  + 
Sbjct: 145 LSRASSLGSSRAYPVSSSSITSNNNSANRRLDPPSSVFSDNMR--------DNPTITTHD 196

Query: 184 VGIGGNVCSPRVFNELDNVGSRVSDRRIGAREPVERNVRFSRTLSVGRLRDRVLRRSSLS 243
           V    N+ S     E++++ +R++DRRIG REPVERNVRFSRTLSVGRLRDRVLRRSS S
Sbjct: 197 V----NLHSTSGHAEIESMETRLADRRIGPREPVERNVRFSRTLSVGRLRDRVLRRSSFS 252

Query: 244 DITFCPLQQERLVRDANQRSARNAFGGDTEILSSTPEGNGNGVTSPLTSGYPPSSRSSSL 303
           D+TFCPL++ER  RD +Q S R     +T      P  + N  TSP +SGYP        
Sbjct: 253 DLTFCPLRREREARDMSQGSERQVLDNETR----APATDRNVATSPTSSGYP-------- 300

Query: 304 FGIQDHEVETSRSREARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHERSCI 363
                         +ARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHERSCI
Sbjct: 301 -------------LDARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHERSCI 347

Query: 364 LSGQHRTGRCTCRVSNRDANSGDETGTRASISRIVMLAEALFEVLDEIHQQSVVLSSRPS 423
            SGQHRTGRCTCRV+ RDANS D+T  RASISRIVMLAEALFEVLDEIHQQSVVLSSRPS
Sbjct: 348 SSGQHRTGRCTCRVNTRDANSNDDTSARASISRIVMLAEALFEVLDEIHQQSVVLSSRPS 407

Query: 424 MSSIGSIPAPNEVVESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHK 483
           +SSIGS+PAPNEVVESLP+KLY KSQK+QN+E AQCYICL+EYEEGD++RVLPCHHEFH+
Sbjct: 408 VSSIGSVPAPNEVVESLPLKLYDKSQKHQNDEAAQCYICLVEYEEGDNMRVLPCHHEFHR 467

Query: 484 TCVDKWLKEIHRVCPLCRGDICKPDSLPSEN 514
           TCVDKWLKEIHRVCPLCRGDIC+  SL +EN
Sbjct: 468 TCVDKWLKEIHRVCPLCRGDICRSGSLLAEN 498

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074629|ref|XP_002304401.1| predicted protein [Populus trichocarpa] gi|222841833|gb|EEE79380.1| predicted protein [Populus trichocarpa]

 Score =  516 bits (1329), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 269/353 (76%), Positives = 303/353 (85%), Gaps = 6/353 (1%)

Query: 164 NLEEIQN--AARDDGDGVGNNRVGIGGNVCSPRVFNELDNVGSRVSDRRIGAREPVERNV 221
           N++E QN  + R+ G   G NRV +  N+ SPR+FN++D + +R+SDRRIGAREP ERNV
Sbjct: 240 NMQENQNIFSIRNSGRDGGGNRVEVDANLRSPRMFNDMDGIETRLSDRRIGAREPAERNV 299

Query: 222 RFSRTLSVGRLRDRVLRRSSLSDITFCPLQQERLVRDANQRSARNAFGGDTEILSSTPEG 281
           RFSRTLSVGRLRDRVLRRSSL ++TFCPLQQER +R ++Q S R A GG+  +     E 
Sbjct: 300 RFSRTLSVGRLRDRVLRRSSLPELTFCPLQQEREMRGSSQGSGRQAVGGEMRV----SES 355

Query: 282 NGNGVTSPLTSGYPPSSRSSSLFGIQDHEVETSRSREARYHDLLEHRSNFLERRRRIRSQ 341
            GN +TS    GYPPS  SSSLF IQDHEVETSR+REARY DLLEHRSNFLERRRRIRSQ
Sbjct: 356 EGNTLTSTTALGYPPSGMSSSLFSIQDHEVETSRTREARYRDLLEHRSNFLERRRRIRSQ 415

Query: 342 VRALQRLGSRFENLSGHERSCILSGQHRTGRCTCRVSNRDANSGDETGTRASISRIVMLA 401
           VRALQRLGSRFENLSGHERSCILSGQHRTGRCTCRV+NRDAN  D+T  RASISRIVMLA
Sbjct: 416 VRALQRLGSRFENLSGHERSCILSGQHRTGRCTCRVNNRDANLNDDTSARASISRIVMLA 475

Query: 402 EALFEVLDEIHQQSVVLSSRPSMSSIGSIPAPNEVVESLPVKLYTKSQKYQNEEVAQCYI 461
           EALFEVLDEIHQQSVVLSS PSMSS+GS+PAPNE+VESLPVKLY KSQK+QNE+ AQCYI
Sbjct: 476 EALFEVLDEIHQQSVVLSSLPSMSSLGSVPAPNEIVESLPVKLYAKSQKHQNEDTAQCYI 535

Query: 462 CLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPSEN 514
           CL+EYEEGDS+RVLPCHHEFH+TCVDKWLKEIHRVCPLCRGDIC+ +S P+EN
Sbjct: 536 CLVEYEEGDSMRVLPCHHEFHRTCVDKWLKEIHRVCPLCRGDICRSESSPAEN 588

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495268|ref|XP_003516501.1| PREDICTED: uncharacterized protein LOC100815830 [Glycine max]

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 315/558 (56%), Positives = 368/558 (65%), Gaps = 94/558 (16%)

Query: 32  FQSSCLGSDTGTASGSRHTRSQ-----RDEENGGNQS-----ETESDELKIECDRKEK-- 79
           F S CLG+    +SGSR   S      +++ NG + +     E +SDE+K E  RK K  
Sbjct: 29  FPSYCLGA----SSGSRDIDSDDQVCDQNKVNGEDVTYSSGNEIDSDEVKTESFRKVKSD 84

Query: 80  --DEIDCISNSDELDGWGEANITSVNGNGGTGSSSARSSSNPCRFLSRFSFIPGNISFRL 137
             DE+ C+ ++ +L+ WG     S  G+    SSS +S +   RFLSRFS +PGNISFRL
Sbjct: 85  KSDEVPCVPSNIDLEEWGHT--ASRTGSSSAHSSSNQSLNPSSRFLSRFSLVPGNISFRL 142

Query: 138 SRAASLGSSRG-----------YNTDE--------------------------------- 153
           SR  SLGSSR             N DE                                 
Sbjct: 143 SRTTSLGSSRPCPVSSESLSIFNNEDELNLPPGLPGSLINRNETQHRCDLLNASLASQVP 202

Query: 154 ---HGRSSSNF---------PHNL-----EEIQNAARDDGDGVGNNRVGIGGNVCSPRVF 196
              H  +S+N          P NL       +Q+  RD G+G    R     N+ SPR+ 
Sbjct: 203 IQCHQEASNNLRSNTLTLVSPGNLVSSRISSVQDVVRD-GNGT---REVPDMNLFSPRIH 258

Query: 197 NELDNVGSRVSDRRIGAREPVERNVRFSRTLSVGRLRDRVLRRSSLSDITFCPLQQERLV 256
            + +++ +R +DRR GAREPVERNVRFSRTLSVGRLRDRVLRR+++SD TFCPLQ+ER  
Sbjct: 259 TDTEDIETRHTDRRNGAREPVERNVRFSRTLSVGRLRDRVLRRTTVSDFTFCPLQRER-- 316

Query: 257 RDANQRSARNAFGGDTEILSSTPEGNGNGVTSPLTSGYPPSSRSSSLFGIQDHEVETSRS 316
            DA+Q + R A   DT +  S     G   T+  T  YP  S  SSLFGIQD+EVETSRS
Sbjct: 317 -DASQDNGRRAGERDTRLSPS-----GRNATNSSTPRYPLPSTPSSLFGIQDYEVETSRS 370

Query: 317 REARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHERSCILSGQHRTGRCTCR 376
           RE RY DLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGH+RSCILSGQHR GRC CR
Sbjct: 371 RETRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCACR 430

Query: 377 VSNRDANSGDETGTRASISRIVMLAEALFEVLDEIHQQSVVLSSRPSMSSIGSIPAPNEV 436
           +++RD NS D+T  RASISRIVMLAEALFEVLDEIHQQS+VLSSRPS+SSIGS+PAPNEV
Sbjct: 431 INSRDTNSNDDTNARASISRIVMLAEALFEVLDEIHQQSMVLSSRPSVSSIGSVPAPNEV 490

Query: 437 VESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRV 496
           VESLPVKLYTK  K+Q EE  QCYICL+EYE+GDS+RVLPCHHEFH TCVDKWLKEIHRV
Sbjct: 491 VESLPVKLYTKLHKHQ-EEPVQCYICLVEYEDGDSMRVLPCHHEFHTTCVDKWLKEIHRV 549

Query: 497 CPLCRGDICKPDSLPSEN 514
           CPLCRGDIC  DSLP EN
Sbjct: 550 CPLCRGDICASDSLPREN 567

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552350|ref|XP_002517219.1| ring finger protein, putative [Ricinus communis] gi|223543590|gb|EEF45119.1| ring finger protein, putative [Ricinus communis]

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 321/561 (57%), Positives = 380/561 (67%), Gaps = 82/561 (14%)

Query: 1   MGSSGSKACGNEPTTASSSKKARSSRANNWLFQSSCLGSDTGTASGSRHTRSQRD-EENG 59
           MGSSGSKA  N   ++SS +K R     + +FQSSCLG   G  S        R+ +EN 
Sbjct: 1   MGSSGSKAFNNSGASSSSGRKGRC--KGSRVFQSSCLG---GAPSNDNTKMCHRNSKENI 55

Query: 60  GN-----QSETESDELKIECDRKE--KDEIDCISNSDELDGWGEANITSVNGNGGTGSSS 112
           GN     Q+ T S ++KI+C + +  + E  C+S+S  LD   +A+IT  N     GSSS
Sbjct: 56  GNASPSGQTGTLSGQVKIDCRKVKVKQSEESCVSSSAGLDECSQASIT--NRACRIGSSS 113

Query: 113 ARSSSNPC-----RFLSRFSFIPGNISFRLSRAASLGSSRGY----------NTDE---H 154
           AR++S P       FLSRFSFIPGN+SFRL+RA SLGSSR Y          N +E   H
Sbjct: 114 ARAASIPSLTSQSSFLSRFSFIPGNMSFRLNRATSLGSSRAYRIPSTSLQMLNDEEEIQH 173

Query: 155 GRSS------------------------------------SNFPHNLEEIQ-----NAAR 173
            RS+                                    SNF  N   IQ     + A 
Sbjct: 174 PRSANNTDGSETQQISDLQPTTHSQHHVDTSANVHLHNRASNFLDNNGSIQTTSSVHGAC 233

Query: 174 DDGDGVGNNRVGIGGNVCSPRVFNELDNVGSRVSDRRIGAREPVERNVRFSRTLSVGRLR 233
            DGD +   +VG  G   SPR++++ D+  +R+SDRRIGA+EP+E NV FSRTLSVGRLR
Sbjct: 234 RDGDDI---KVGNDGTSRSPRIYSDSDSFETRISDRRIGAQEPIEHNVCFSRTLSVGRLR 290

Query: 234 DRVLRRSSLSDITFCPLQQERLVRDANQRSARNAFGGDTEILSSTPEGNGNGVTSPLTSG 293
           DRVLRRS  SDIT CPLQQER +RDA   S   A G +  I     E  G+ +  P TSG
Sbjct: 291 DRVLRRSPPSDITICPLQQERDLRDATHVSGGQALGSEIRI----SESEGDALNPPTTSG 346

Query: 294 YPPSSRSSSLFGIQDHEVETSRSREARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFE 353
           YPP S SSS+F + DHE+ET+RSR+ RYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFE
Sbjct: 347 YPPVS-SSSMFSVHDHELETTRSRDTRYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFE 405

Query: 354 NLSGHERSCILSGQHRTGRCTCRVSNRDANSGDETGTRASISRIVMLAEALFEVLDEIHQ 413
           NLSGHERSCILSG HRTGRCTCR +NRDAN  D+T  RASISRIVMLAEALFEVLDEIHQ
Sbjct: 406 NLSGHERSCILSGHHRTGRCTCRTTNRDANLNDDTSARASISRIVMLAEALFEVLDEIHQ 465

Query: 414 QSVVLSSRPSMSSIGSIPAPNEVVESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVR 473
           QSVVLSS+PS+SS+GS+PAPNEVVESLPV+LYTK QK+Q+EE AQCYICL+EYEEGDS+R
Sbjct: 466 QSVVLSSQPSLSSLGSVPAPNEVVESLPVELYTKLQKHQSEEAAQCYICLVEYEEGDSMR 525

Query: 474 VLPCHHEFHKTCVDKWLKEIH 494
           +LPCHHEFH+TC+DKWLKEIH
Sbjct: 526 ILPCHHEFHRTCIDKWLKEIH 546

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465663|ref|XP_004150547.1| PREDICTED: uncharacterized protein LOC101213468 [Cucumis sativus]

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 308/572 (53%), Positives = 369/572 (64%), Gaps = 90/572 (15%)

Query: 13  PTTASSSKKARSSRANNW-LFQSSCLGSDTGTASGSRHT-----------RSQRDEENGG 60
           P T S S + R  R+    +FQS+CLG    T+SGS H+           +    + +  
Sbjct: 16  PETLSCSGRIRRGRSKGRRVFQSACLG----TSSGSHHSDNDDNDSESENKKNAHDYSST 71

Query: 61  NQSETESDELKIECDRK----EKDEIDCISNSDELDGWGEANITSVNGNGGTGS---SSA 113
           NQ+    D++K+E  R+    E  E+ CIS++  L+GW +A +       G+ S   SS 
Sbjct: 72  NQTAQALDQMKVEGYRRVKAEESVEMPCISSNATLNGWDQAGVAVTAPRAGSTSARVSSL 131

Query: 114 RSSSNPCRFLSRFSFIPGNISFRLSRAASLGSSRGY------------------------ 149
           +S +    FLSRFSFIPGN+SFRLSRA+SLGSSR Y                        
Sbjct: 132 QSLNTSSNFLSRFSFIPGNVSFRLSRASSLGSSRSYPVSSTNLSMLNDENEPPLSDRPAR 191

Query: 150 -----------------------NTDEHGRSSSNFPHN---------LEEIQNAARDDGD 177
                                  +T  +G S ++F  N         L+E Q+ +     
Sbjct: 192 GLNGQDETQQGRDLLPASVASETHTQCYGDSPASFRLNTQPSGLSDNLQENQSVSSTHDM 251

Query: 178 GVGNNRVGIG-GNVCSPRVFNELDNVGSRVSDRRIGAREPVERNVRFSRTLSVGRLRDRV 236
               +  G+G G++  PR   E ++   R SDRR G+REPVERN RFSRTLSVGRLRDRV
Sbjct: 252 AGACDNFGVGSGSLSHPRTLPENESSEIRQSDRRTGSREPVERNFRFSRTLSVGRLRDRV 311

Query: 237 LRRSSLSDITFCPLQQERLVRDANQRSARNAFGGDTEILSSTPEG---NGNGVTSPLTSG 293
           LRRSSLSD TFCP QQE   RDA+        G D  + ++   G     N ++SP TSG
Sbjct: 312 LRRSSLSDFTFCPPQQEGDERDASHS------GDDQHVWTAETRGLASEDNVMSSPTTSG 365

Query: 294 YPPSSRSSSLFGIQDHEVETSRSREARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFE 353
           +  SS SSS+F  QD EV+T+R REARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFE
Sbjct: 366 FQASSLSSSIFSTQDFEVDTTRPREARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFE 425

Query: 354 NLSGHERSCILSGQHRTGRCTCRVSNRDANSGDETGTRASISRIVMLAEALFEVLDEIHQ 413
           NLSGHERSCILSGQHRTG CTCR++NRD N  D T  RASISRIVMLAEALFEVLDEIHQ
Sbjct: 426 NLSGHERSCILSGQHRTGHCTCRINNRDTNINDNTSARASISRIVMLAEALFEVLDEIHQ 485

Query: 414 QSVVLSSRPSMSSIGSIPAPNEVVESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVR 473
           QSVVLSSRP+ SSIGS+PAPN+VV+SLPVK ++K QK+Q+EE AQCYICL+EYEEGDS+R
Sbjct: 486 QSVVLSSRPA-SSIGSLPAPNDVVDSLPVKFHSKLQKHQSEEAAQCYICLVEYEEGDSMR 544

Query: 474 VLPCHHEFHKTCVDKWLKEIHRVCPLCRGDIC 505
           VLPCHHEFH TCVDKWLKEIHRVCPLCRGDIC
Sbjct: 545 VLPCHHEFHTTCVDKWLKEIHRVCPLCRGDIC 576

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529795|ref|XP_003533473.1| PREDICTED: uncharacterized protein LOC100786091 [Glycine max]

 Score =  503 bits (1294), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 304/548 (55%), Positives = 365/548 (66%), Gaps = 76/548 (13%)

Query: 32  FQSSCLGSDTGT-ASGSRHTRSQRDEENGGNQS-----ETESDELKIECDRKEK-DEIDC 84
           F S CLG+ +G+    S      +++ NG + +     E +SDE K E  RK K DE+ C
Sbjct: 31  FPSYCLGATSGSRGIDSDDQVCDQNKVNGDDVTYSSGNEIDSDEGKTESFRKVKSDEVPC 90

Query: 85  ISNSDELDGWGEANITSVNGNGGTGSSSARSSSNPCRFLSRFSFIPGNISFRLSRAASLG 144
           + ++ +L+GWG    TS  G+    SSS +S +   RFLSRFS +PGNISFRLSR  SLG
Sbjct: 91  VPSNIDLEGWGHT--TSRTGSSSAHSSSNQSLNPSSRFLSRFSLVPGNISFRLSRTTSLG 148

Query: 145 SSRG----------YNTDEHGRSSSNFPHNL---------EEIQNAA----------RDD 175
           SSR           +N ++        P +L          ++ NA+          ++ 
Sbjct: 149 SSRPCPVSSESLSIFNNEDELNLPPGLPGSLINRNETQHRSDLLNASLASQVPIQCHQEA 208

Query: 176 GDGVGNNRVGI--GGNVCSPRVFNELDNVG---------------------------SRV 206
            + + +N   +   GN+ S R  + + +V                             R+
Sbjct: 209 SNNLRSNTPTLVSPGNLVSSRTLSSVQDVARDGNGTREVLDVNLFSPRIHTDSENIEPRL 268

Query: 207 SDRRIGAREPVERNVRFSRTLSVGRLRDRVLRRSSLSDITFCPLQQERLVRDANQRSARN 266
           +DRR GAREPVERNVRFSRTLSVGRLRDRVLRRS++SD TFCPLQ+E   RDA+Q + R 
Sbjct: 269 TDRRNGAREPVERNVRFSRTLSVGRLRDRVLRRSTVSDFTFCPLQRE---RDASQDNGRR 325

Query: 267 AFGGDTEILSSTPEGNGNGVTSPLTSGYPPSSRSSSLFGIQDHEVETSRSREARYHDLLE 326
               DT +   +P G     +S  T  YP  S  SSLFGI+D+EVETS+SRE RY DLLE
Sbjct: 326 TGERDTRV---SPSGRNAANSS--TPRYPLPSTPSSLFGIEDYEVETSQSRETRYQDLLE 380

Query: 327 HRSNFLERRRRIRSQVRALQRLGSRFENLSGHERSCILSGQHRTGRCTCRVSNRDANSGD 386
           HRSNFLERRRRIRSQVRALQRLGSRFENLSGH+RSCILSGQHR GRC CR+++RD NS D
Sbjct: 381 HRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCACRINSRDTNSND 440

Query: 387 ETGTRASISRIVMLAEALFEVLDEIHQQSVVLSSRPSMSSIGSIPAPNEVVESLPVKLYT 446
           +T  RASISRIVMLAEALFEVLDEIHQQSVVLSSRPS+SSIGS+PAPN+VVESLPVKLYT
Sbjct: 441 DTNARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPNDVVESLPVKLYT 500

Query: 447 KSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICK 506
           K  K+Q EE  QCYICL+EYE+GDS+RVLPCHHEFH TCVDKWLKEIHRVCPLCRGDIC 
Sbjct: 501 KLHKHQ-EEPVQCYICLVEYEDGDSMRVLPCHHEFHTTCVDKWLKEIHRVCPLCRGDICV 559

Query: 507 PDSLPSEN 514
            DSLP EN
Sbjct: 560 SDSLPREN 567

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484513|ref|XP_003612544.1| RING finger protein [Medicago truncatula] gi|355513879|gb|AES95502.1| RING finger protein [Medicago truncatula]

 Score =  499 bits (1286), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 314/558 (56%), Positives = 367/558 (65%), Gaps = 82/558 (14%)

Query: 20  KKARSSRANNWLFQSSCLGSDTGTASGSRHTRSQ-----RDEENGGNQS-----ETESDE 69
           +K RS R     F S CLG    T SGSR + +      +++ NG + +     E +SDE
Sbjct: 22  RKGRSKRYKG--FPSYCLG----TTSGSRDSDNDDQVCDQNKVNGSDVTYTSSNEIDSDE 75

Query: 70  LKIECDRKEK-DEIDCISNSDELDGWG--EANITSVNGNGGTGSSSARSSSNPCRFLSRF 126
           +K E  RK K +EI C+ ++ +LD W   E+   S + +G    SS +S++   RFLSRF
Sbjct: 76  VKSESFRKVKPEEIPCMPSNIDLDEWSRTESRTASSSAHG----SSTQSTNPASRFLSRF 131

Query: 127 SFIPGNISFRLSRAASLGSSRG-----------YNTDE---------------------- 153
           S IPGNISFRLSR  SLGSSR             N DE                      
Sbjct: 132 SIIPGNISFRLSRTTSLGSSRPCPVSSASLSIFNNEDELSLHPRPHDLLNASFVNQVPIE 191

Query: 154 -HGRSSSNFPHN--------------LEEIQNAARDDGDGVGNNRVGIGGNVCSPRVFNE 198
            H  +S+N   N              L  IQ+  RD   G    R   G N+ SPR+  E
Sbjct: 192 NHENASNNLSSNVPTFGLDRNLSSPMLSPIQDMVRD---GYAT-RDMPGVNMFSPRIHTE 247

Query: 199 LDNVGSRVSDRRIGAREPVERNVRFSRTLSVGRLRDRVLRRSSLSDITFCPLQQERLVRD 258
             N  +R  DRR GAREPV+RNVRFSRTLSVGRLRDRV RRS L+D  FCPL QER +RD
Sbjct: 248 TGNAETRQIDRRNGAREPVDRNVRFSRTLSVGRLRDRVHRRSGLADFNFCPLTQERELRD 307

Query: 259 ANQRSARNAFGGDTEILSSTPEGNGNGVTSPLTSGYPPSSRSSSLFGIQDHEVETSRSRE 318
           A++ + R      T +  S    + N + S  TSGYP  + SSS F  QD+EVE SRSRE
Sbjct: 308 ASEDNGRQVGERGTRVSPS----DRNALNSHTTSGYPLPNMSSSPFTTQDYEVEASRSRE 363

Query: 319 ARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHERSCILSGQHRTGRCTCRV- 377
            RY DLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGH+RSCILSGQHR GRCTCR+ 
Sbjct: 364 TRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCTCRLT 423

Query: 378 -SNRDANSGDETGTRASISRIVMLAEALFEVLDEIHQQSVVLSSRPSMSSIGSIPAPNEV 436
             + ++NS D+T  RASISRIVMLAEALFEVLDEIHQQSVVLSSRPS+SSIGS+PAP EV
Sbjct: 424 SRDNNSNSNDDTNARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPAEV 483

Query: 437 VESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRV 496
           VESLPVKLYTK QK+Q EE  QCYICL+EYE+GDS+RVLPCHHEFH TC+DKWLKE+HRV
Sbjct: 484 VESLPVKLYTKLQKHQ-EEPVQCYICLVEYEDGDSMRVLPCHHEFHTTCIDKWLKEVHRV 542

Query: 497 CPLCRGDICKPDSLPSEN 514
           CPLCRGDIC  DSLP+EN
Sbjct: 543 CPLCRGDICISDSLPTEN 560

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449512895|ref|XP_004164172.1| PREDICTED: uncharacterized LOC101213468, partial [Cucumis sativus]

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 290/512 (56%), Positives = 340/512 (66%), Gaps = 74/512 (14%)

Query: 61  NQSETESDELKIECDRK----EKDEIDCISNSDELDGWGEANITSVNGNGGTGS---SSA 113
           NQ+    D++K+E  R+    E  E+ CIS++  L+GW +A +       G+ S   SS 
Sbjct: 17  NQTAQALDQMKVEGYRRVKAEESVEMPCISSNATLNGWDQAGVAVTAPRAGSTSARVSSL 76

Query: 114 RSSSNPCRFLSRFSFIPGNISFRLSRAASLGSSR-------------------------- 147
           +S +    FLSRFSFIPGN+SFRLSRA+SLGSSR                          
Sbjct: 77  QSLNTSSNFLSRFSFIPGNVSFRLSRASSLGSSRSYPVSSTNLSMLNDENEPPLSDRPAR 136

Query: 148 ---GYNTDEHGR---------------------------SSSNFPHNLEEIQNAARDDGD 177
              G +  + GR                             S    NL+E Q+ +     
Sbjct: 137 GLNGQDETQQGRDLLPASVASETHTQCYGDSPASFRLNTQPSGLSDNLQENQSVSSTHDM 196

Query: 178 GVGNNRVGIG-GNVCSPRVFNELDNVGSRVSDRRIGAREPVERNVRFSRTLSVGRLRDRV 236
               +  G+G G++  PR   E ++   R SDRR G+REPVERN RFSRTLSVGRLRDRV
Sbjct: 197 AGACDNFGVGSGSLSHPRTLPENESSEIRQSDRRTGSREPVERNFRFSRTLSVGRLRDRV 256

Query: 237 LRRSSLSDITFCPLQQERLVRDANQRSARNAFGGDTEILSSTPEG---NGNGVTSPLTSG 293
           LRRSSLSD TFCP QQE   RDA+        G D  + ++   G     N ++SP TSG
Sbjct: 257 LRRSSLSDFTFCPPQQEGDERDASHS------GDDQHVWTAETRGLASEDNVMSSPTTSG 310

Query: 294 YPPSSRSSSLFGIQDHEVETSRSREARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFE 353
           +  SS SSS+F  QD EV+T+R REARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFE
Sbjct: 311 FQASSLSSSIFSTQDFEVDTTRPREARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFE 370

Query: 354 NLSGHERSCILSGQHRTGRCTCRVSNRDANSGDETGTRASISRIVMLAEALFEVLDEIHQ 413
           NLSGHERSCILSGQHRTG CTCR++NRD N  D T  RASISRIVMLAEALFEVLDEIHQ
Sbjct: 371 NLSGHERSCILSGQHRTGHCTCRINNRDTNINDNTSARASISRIVMLAEALFEVLDEIHQ 430

Query: 414 QSVVLSSRPSMSSIGSIPAPNEVVESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVR 473
           QSVVLSSRP+ SSIGS+PAPN+VV+SLPVK ++K QK+Q+EE AQCYICL+EYEEGDS+R
Sbjct: 431 QSVVLSSRPA-SSIGSLPAPNDVVDSLPVKFHSKLQKHQSEEAAQCYICLVEYEEGDSMR 489

Query: 474 VLPCHHEFHKTCVDKWLKEIHRVCPLCRGDIC 505
           VLPCHHEFH TCVDKWLKEIHRVCPLCRGDIC
Sbjct: 490 VLPCHHEFHTTCVDKWLKEIHRVCPLCRGDIC 521

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560617|ref|XP_003548587.1| PREDICTED: uncharacterized protein LOC100812272 [Glycine max]

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 313/584 (53%), Positives = 381/584 (65%), Gaps = 79/584 (13%)

Query: 1   MGSSGSKACGNEPTTASSS-----KKARSSRANNWLFQSSCLGSDTGTA-SGSRHTRSQR 54
           MGS+GSKA  +  +++SSS     +K RS      +FQS CLG+ +G+  S +      +
Sbjct: 1   MGSNGSKATSSYLSSSSSSSSGSLRKGRSKGLK--VFQSCCLGTTSGSHDSDNEDQVCDQ 58

Query: 55  DEENGGNQSE-----TESDELKIECDRKEKD-EIDCISNSDELDGWGEANITSVNGNGGT 108
           ++ NG + +      T+SDE+K E  RK K   + C+ ++  LDGWGE +I + +   G+
Sbjct: 59  NKVNGSDATYADGNGTDSDEVKAESFRKVKPGAMTCMPSNIGLDGWGETSIPNTSSRTGS 118

Query: 109 GSSSARSSS--NPCRF-LSRFSFIPGNISFRLSRAASLGSSRGY-----------NTDEH 154
            S    S+   NP    LSRFS IPGN+SFRLSR  SLGSS              N DEH
Sbjct: 119 SSIHTSSTHSLNPTSHCLSRFSLIPGNVSFRLSRTTSLGSSSPRPVSSANLSIFDNEDEH 178

Query: 155 -----------GRSSSNFPHNL--------------EEIQNAAR--------------DD 175
                       RS +    NL              E+  N +R              + 
Sbjct: 179 NLHPGSPGCLINRSVTQQRSNLLPASFFNQIHAQCHEDASNNSRSNVPTSGILGNLQSNS 238

Query: 176 GDGVGNNRVGIGGNVCSPRVFNELDNVGSRVS--DRRIGAREPVERNVRFSRTLSVGRLR 233
            DGV   R G   N+ SPR     +NV +  +  D+R GAREPVERN  FSRTLSVGRLR
Sbjct: 239 TDGVC-TREGPDVNLLSPRSQTATENVDNDTTHIDQRNGAREPVERNFHFSRTLSVGRLR 297

Query: 234 DRVLRRSSLSDITFCPLQQERLVRDA---NQRSARNAFGGDTEILSSTPEGNGNGVTSPL 290
           DRVLRRS+LSD+TF PLQQE  +RDA   +Q   R A  G++ +  S      +   +  
Sbjct: 298 DRVLRRSTLSDLTFFPLQQETELRDASLPSQDMDRQAVEGNSRVSPS-----DHSTINSS 352

Query: 291 TSGYPPSSRSSSLFGIQDHEVETSRSREARYHDLLEHRSNFLERRRRIRSQVRALQRLGS 350
           T+ YPPSS S+S+F IQD+E ETS  RE RY DLLEHRSNFLERRRRIRSQVRALQRLGS
Sbjct: 353 TNRYPPSSMSNSMFSIQDYEGETSGLREGRYQDLLEHRSNFLERRRRIRSQVRALQRLGS 412

Query: 351 RFENLSGHERSCILSGQHRTGRCTCRVSNRDANSGDETGTRASISRIVMLAEALFEVLDE 410
           RFENLSGH+RSCILSGQHR G CTCR++NR+ NS D+TG RASISRIVMLAEALFEVLDE
Sbjct: 413 RFENLSGHDRSCILSGQHRNGHCTCRINNRNTNSNDDTGARASISRIVMLAEALFEVLDE 472

Query: 411 IHQQSVVLSSRPSMSSIGSIPAPNEVVESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGD 470
           IH QSVVLSSRPS+SSIGS+PAPN+VV+SLPVKLY K  K+Q E+ AQCYICL+EYE+GD
Sbjct: 473 IHHQSVVLSSRPSVSSIGSVPAPNDVVDSLPVKLYEKLHKHQ-EDAAQCYICLVEYEDGD 531

Query: 471 SVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPSEN 514
           ++RVLPCHHEFH+TC+DKWLKEIHRVCPLCR DIC  DS P+EN
Sbjct: 532 NMRVLPCHHEFHRTCIDKWLKEIHRVCPLCRRDICISDSTPTEN 575

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	514
TAIR|locus:2158500	546	AT5G45290 [Arabidopsis thalian	0.881	0.829	0.422	9.7e-80
TAIR|locus:2057861	237	AT2G27940 [Arabidopsis thalian	0.128	0.278	0.492	1.4e-13
TAIR|locus:2824666	201	AT1G35625 "AT1G35625" [Arabido	0.132	0.338	0.347	2.8e-13
UNIPROTKB|D6RIE5	230	RNF150 "RING finger protein 15	0.153	0.343	0.375	5.1e-13
TAIR|locus:2201158	204	AT1G21960 [Arabidopsis thalian	0.130	0.328	0.463	8.1e-12
UNIPROTKB|K7GLM9	238	LOC100519887 "Uncharacterized	0.143	0.310	0.386	9.2e-12
UNIPROTKB|F1RRE9	269	RNF150 "Uncharacterized protei	0.153	0.293	0.387	1.4e-11
TAIR|locus:2825708	197	AT1G20823 [Arabidopsis thalian	0.126	0.329	0.470	1.7e-11
ZFIN|ZDB-GENE-060213-1	418	rnf150a "ring finger protein 1	0.153	0.188	0.375	1.9e-11
TAIR|locus:2153554	176	DAF "DEFECTIVE IN ANTHER DEHIS	0.112	0.329	0.460	2.5e-11

TAIR|locus:2158500 AT5G45290 [Arabidopsis thaliana (taxid:3702)]

 Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
 Identities = 211/499 (42%), Positives = 255/499 (51%)

Query:    28 NNWLFQSSCLGSDTGTASGSRHTRSQRDEENGGNQSETESDELKIECDRKEKDEIDCISN 87
             N W+ +S   GS T     SR   S   ++   +  ++E++     CD  E D+ +C   
Sbjct:    70 NGWMRKSH--GSVTRRRMESRRDASDCYDKELKDDKKSENER---HCDELELDD-ECGVE 123

Query:    88 SDELDGWGEAXXXXXXXXXXXXXXXXXXXXXPCRFLSRFSFIPGNISFXXXXXXXXXXX- 146
              +E     EA                     P R  S F FIPGNIS             
Sbjct:   124 EEE----EEASVSNVQMRNVSGSIQESST--PGRVFSHFKFIPGNISSRLSRASSSRSFN 177

Query:   147 XXYNTDEHGR-----SSSNFPHNLEE-IQN----AAXXXXXXXXXXXXXXXXXXCSPRVF 196
               Y      R     S S     L + +++                         SPRV 
Sbjct:   178 TTYPVSSSHREDGVTSPSESAIRLNDRVESPRIPVIDNVVRDIDAMRFGEDGSLRSPRVV 237

Query:   197 NELDNVGSRVSDRRIGAREP-VERNVRFSRTXXXXXXXXXXXXXXXXXXITFCPLQQERL 255
             N +D+  + + DRR   REP +ERNVRFSRT                    F P   +  
Sbjct:   238 NGMDSTYAGLLDRRHVVREPSIERNVRFSRTLSVGRLRDRVLRRSSLSDFAFRPSPHQG- 296

Query:   256 VRDANQRSARNAFGGDTEILSSTPEGNGNGVTSPLTSGYPPXXXXXXLFGIQDHEVETSR 315
               D +  SA  A   D  + S          TS L            LFGIQDHE   + 
Sbjct:   297 EEDTDLFSAETAAAEDAPVTS----------TSILNRS--ASSIRRTLFGIQDHETPAAL 344

Query:   316 SREARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLS-GHERSCILSGQHRTGRCT 374
              RE RY  LLEHRS+FLERRRRIRSQVRALQRLGSRFEN++  H+RSC+LSGQ + GRCT
Sbjct:   345 VREGRYQGLLEHRSDFLERRRRIRSQVRALQRLGSRFENVAVHHDRSCVLSGQDQAGRCT 404

Query:   375 CR-VSNRDANSG--DETGTRASISRIVMLAEALFEVLDEIHQQXXXXXXXXXXXXXXXXX 431
             CR V+NR + +   DET  RASISRIV+LAEALFEVLDEIHQQ                 
Sbjct:   405 CRAVTNRGSTTATTDETNARASISRIVLLAEALFEVLDEIHQQSVVLSSQQPSVSSIGSV 464

Query:   432 -APNEVVESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWL 490
              APN+VV+ LP+KLYTKSQ   +E+ +QCYICL+EYEE DS+R LPCHHEFHKTCVDKWL
Sbjct:   465 PAPNDVVDLLPIKLYTKSQ---SEDPSQCYICLVEYEEADSIRTLPCHHEFHKTCVDKWL 521

Query:   491 KEIH-RVCPLCRGDICKPD 508
             KEIH RVCPLCRGDIC+ D
Sbjct:   522 KEIHSRVCPLCRGDICRHD 540

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2057861 AT2G27940 [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 35/71 (49%), Positives = 48/71 (67%)

Query:   434 NEVVESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLP-CHHEFHKTCVDKWLKE 492
             ++ V SLPV  YTK+ K +NE+   C ICL ++EEG++V+V+P C H FH  CVD WL  
Sbjct:   118 SQAVRSLPVYRYTKAAKQRNED---CVICLSDFEEGETVKVIPHCGHVFHVDCVDTWLSS 174

Query:   493 IHRVCPLCRGD 503
              +  CPLCR +
Sbjct:   175 -YVTCPLCRSN 184

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2824666 AT1G35625 "AT1G35625" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
 Identities = 24/69 (34%), Positives = 43/69 (62%)

Query:   433 PNEVVESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE 492
             P ++++S+P ++YT   +  +  V  C IC+ +Y  G+ +R+LPC H++H  C+D WL  
Sbjct:    91 PKDLLQSMPTEVYTGVLEEGSTSVT-CAICIDDYRVGEILRILPCKHKYHAVCIDSWLGR 149

Query:   493 IHRVCPLCR 501
                 CP+C+
Sbjct:   150 CRSFCPVCK 158

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008233 "peptidase activity" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA;ISS

UNIPROTKB|D6RIE5 RNF150 "RING finger protein 150" [Homo sapiens (taxid:9606)]

 Score = 178 (67.7 bits), Expect = 5.1e-13, P = 5.1e-13
 Identities = 30/80 (37%), Positives = 45/80 (56%)

Query:   432 APNEVVESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLK 491
             A  + +  L ++   K  K    +   C +C+  Y+  D VR+LPC H FHK+CVD WL 
Sbjct:    82 AAKKAISKLQIRTIKKGDKETESDFDNCAVCIEGYKPNDVVRILPCRHLFHKSCVDPWLL 141

Query:   492 EIHRVCPLCRGDICKPDSLP 511
             + HR CP+C+ +I K   +P
Sbjct:   142 D-HRTCPMCKMNILKALGIP 160

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2201158 AT1G21960 [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 8.1e-12, P = 8.1e-12
 Identities = 32/69 (46%), Positives = 44/69 (63%)

Query:   436 VVESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHR 495
             VV+ L  K+Y K +K  N + + C ICL E+E+G+ V  LPC HEF   C+ KW  + H 
Sbjct:   136 VVDRLARKVYNKKKK-SNSDASVCTICLEEFEKGEIVVTLPCGHEFDDGCIGKWFLKDH- 193

Query:   496 VCPLCRGDI 504
             VCPLCR ++
Sbjct:   194 VCPLCRFEL 202

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

UNIPROTKB|K7GLM9 LOC100519887 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 172 (65.6 bits), Expect = 9.2e-12, P = 9.2e-12
 Identities = 29/75 (38%), Positives = 43/75 (57%)

Query:   432 APNEVVESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLK 491
             A  + +  L  +   K  K  + +   C +C+  Y++ D VR+LPC H FHK+CVD WL 
Sbjct:    91 AAKKAISKLTTRTVKKGDKETDPDFDHCAVCIESYKQNDVVRILPCKHVFHKSCVDPWLS 150

Query:   492 EIHRVCPLCRGDICK 506
             E H  CP+C+ +I K
Sbjct:   151 E-HCTCPMCKLNILK 164

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1RRE9 RNF150 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 178 (67.7 bits), Expect = 1.4e-11, P = 1.4e-11
 Identities = 31/80 (38%), Positives = 45/80 (56%)

Query:   432 APNEVVESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLK 491
             A  + +  L V+   K  K    +   C +C+  Y+  D VR+LPC H FHK+CVD WL 
Sbjct:    82 AAKKAISKLQVRTIKKGDKETEPDFDNCAVCIEGYKPNDVVRILPCRHLFHKSCVDPWLL 141

Query:   492 EIHRVCPLCRGDICKPDSLP 511
             + HR CP+C+ +I K   +P
Sbjct:   142 D-HRTCPMCKMNILKALGIP 160

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2825708 AT1G20823 [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 32/68 (47%), Positives = 43/68 (63%)

Query:   435 EVVESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLP-CHHEFHKTCVDKWLKEI 493
             +V++SLP KL    +  ++E+ A+C ICL E+  GD +RVLP C H FH  C+D WL   
Sbjct:    88 KVLQSLP-KLTFSPESPESEKFAECAICLAEFSAGDELRVLPQCGHGFHVACIDTWLGS- 145

Query:   494 HRVCPLCR 501
             H  CP CR
Sbjct:   146 HSSCPSCR 153

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0010200 "response to chitin" evidence=IEP

ZFIN|ZDB-GENE-060213-1 rnf150a "ring finger protein 150a" [Danio rerio (taxid:7955)]

 Score = 184 (69.8 bits), Expect = 1.9e-11, P = 1.9e-11
 Identities = 30/80 (37%), Positives = 47/80 (58%)

Query:   432 APNEVVESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLK 491
             A  + +  L V+   K  K  + +   C +C+ +Y+  D VR+LPC H FH+ CVD WL+
Sbjct:   238 AAKKAISKLQVRTIRKGDKETDSDFDNCAVCIEDYKPNDVVRILPCRHVFHRNCVDPWLQ 297

Query:   492 EIHRVCPLCRGDICKPDSLP 511
             + HR CP+C+ +I K   +P
Sbjct:   298 D-HRTCPMCKMNILKALGIP 316

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2153554 DAF "DEFECTIVE IN ANTHER DEHISCENCE1- ( DAD1-) Activating Factor" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
 Identities = 29/63 (46%), Positives = 38/63 (60%)

Query:   440 LPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLP-CHHEFHKTCVDKWLKEIHRVCP 498
             +PV  Y+   K +  E   C ICL ++ EG++VRVLP C+H FH  C+D WL   H  CP
Sbjct:    97 IPVDSYSPELKMKATE---CLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLS-HSSCP 152

Query:   499 LCR 501
              CR
Sbjct:   153 TCR 155

GO:0008270 "zinc ion binding" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00001211001 SubName- Full=Chromosome chr2 scaffold_113, whole genome shotgun sequence; (433 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	514
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	8e-16
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	2e-13
smart00184	40	smart00184, RING, Ring finger	1e-10
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	3e-10
pfam12678	73	pfam12678, zf-rbx1, RING-H2 zinc finger	7e-09
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	3e-08
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	3e-06
COG5219	1525	COG5219, COG5219, Uncharacterized conserved protei	2e-04
COG5194	88	COG5194, APC11, Component of SCF ubiquitin ligase	0.001
smart00744	49	smart00744, RINGv, The RING-variant domain is a C4	0.003
pfam12861	85	pfam12861, zf-Apc11, Anaphase-promoting complex su	0.003

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 70.9 bits (174), Expect = 8e-16
 Identities = 26/46 (56%), Positives = 31/46 (67%), Gaps = 1/46 (2%)

Query: 458 QCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGD 503
           +C ICL E+E G+ V VLPC H FHK C+DKWL+     CPLCR  
Sbjct: 2   ECPICLDEFEPGEEVVVLPCGHVFHKECLDKWLR-SSNTCPLCRAP 46

Length = 46

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 64.4 bits (157), Expect = 2e-13
 Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 2/47 (4%)

Query: 458 QCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDI 504
           +C ICL E+   + V +LPC H F ++C+DKWLK     CPLCR  I
Sbjct: 1   ECPICLEEFR--EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 56.0 bits (135), Expect = 1e-10
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)

Query: 459 CYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLC 500
           C ICL EY +     +LPC H F ++C+ KWL+  +  CP+C
Sbjct: 1   CPICLEEYLK--DPVILPCGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 61.5 bits (149), Expect = 3e-10
 Identities = 24/50 (48%), Positives = 30/50 (60%)

Query: 458 QCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKP 507
           +C IC+  + + D +RVLPC H FH  CVDKWL      CP+CR  I  P
Sbjct: 325 ECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPPP 374

Length = 374

>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger

 Score = 52.0 bits (125), Expect = 7e-09
 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 11/57 (19%)

Query: 455 EVAQCYICLLEYEE--------GD--SVRVLPCHHEFHKTCVDKWLKEIHRVCPLCR 501
           E   C IC   ++         GD   V    C H FH  C+ +WLK     CPLCR
Sbjct: 18  EDDVCAICRNHFDGTCPECKSPGDDCPVVWGECGHAFHLHCISRWLKT-RNTCPLCR 73

There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control. Length = 73

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 49.0 bits (117), Expect = 3e-08
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 459 CYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLC 500
           C ICL E ++   V +LPC H F   C+  WL+  +  CPLC
Sbjct: 1   CPICLEEPKDP--VTILPCGHLFCSKCILSWLESGNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 44.0 bits (104), Expect = 3e-06
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 459 CYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCR 501
           C ICL      D V + PC H F + C+ ++LK+  + CP+CR
Sbjct: 5   CPICLDLLR--DPVVLTPCGHVFCRECILRYLKKKSK-CPICR 44

Length = 45

>gnl|CDD|227544 COG5219, COG5219, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

 Score = 44.3 bits (104), Expect = 2e-04
 Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 18/103 (17%)

Query: 410  EIHQQSVVLSSRPSMSSIGSIPAPNEVVESLPVKLYTKSQKYQNEEVAQCYICLLEYEEG 469
            EI  +S +   +  M            ++ L   L+ K+   +     +C IC   Y   
Sbjct: 1430 EIGWKSWINLRQNEMIKKNG-----SFMDLL--GLWKKNIDEKFSGHEECAIC---YSVL 1479

Query: 470  DSV-RVLP------CHHEFHKTCVDKWLKEIHR-VCPLCRGDI 504
            D V R LP      C ++FH  C+ KW     R  CPLCR +I
Sbjct: 1480 DMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522

Length = 1525

>gnl|CDD|227521 COG5194, APC11, Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

 Score = 37.9 bits (88), Expect = 0.001
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)

Query: 477 CHHEFHKTCVDKWLKEIHRVCPLCR 501
           C+H FH  C+ +WL     VCPL R
Sbjct: 54  CNHAFHDHCIYRWLDT-KGVCPLDR 77

Length = 88

>gnl|CDD|128983 smart00744, RINGv, The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

 Score = 35.3 bits (82), Expect = 0.003
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 7/50 (14%)

Query: 458 QCYICLLEYEEGDSVRVLPCH-----HEFHKTCVDKWLKEIHRV-CPLCR 501
            C IC  E +EGD   V PC         H+ C+++W+ E     C +C+
Sbjct: 1   ICRICHDEGDEGDP-LVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Classical RING domain: C-x (2) -C-x (9-39)-C-x(1-3)-H-x(2-3)-C-x(2)-C-x(4-48) -C-x(2)-C. Length = 49

>gnl|CDD|193335 pfam12861, zf-Apc11, Anaphase-promoting complex subunit 11 RING-H2 finger

 Score = 36.3 bits (84), Expect = 0.003
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 14/61 (22%)

Query: 453 NEEVAQCYICLLEYE--------EGDSVRVL--PCHHEFHKTCVDKWLKE--IHRVCPLC 500
           +++V  C IC + ++         GD   ++   C H FH  C+ KWL       +CP+C
Sbjct: 20  SDDV--CGICRVSFDGTCPQCKFPGDDCPLVWGKCKHNFHMHCILKWLATETSKGLCPMC 77

Query: 501 R 501
           R
Sbjct: 78  R 78

Apc11 is one of the subunits of the anaphase-promoting complex or cyclosome. The APC subunits are cullin family proteins with ubiquitin ligase activity. Polyubiquitination marks proteins for degradation by the 26S proteasome and is carried out by a cascade of enzymes that includes ubiquitin-activating enzymes (E1s), ubiquitin-conjugating enzymes (E2s), and ubiquitin ligases (E3s). Apc11 acts as an E3 enzyme and is responsible for recruiting E2s to the APC and for mediating the subsequent transfer of ubiquitin to APC substrates in vivo. In Saccharomyces cerevisiae this RING-H2 finger protein defines the minimal ubiquitin ligase activity of the APC, and the integrity of the RING-H2 finger is essential for budding yeast cell viability. Length = 85

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	514
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	99.61
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.43
PHA02929	238	N1R/p28-like protein; Provisional	99.18
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	99.16
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.13
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	98.92
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.92
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.9
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.86
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.82
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.79
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.74
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	98.74
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.74
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.68
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.63
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.63
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	98.61
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.59
PHA02926	242	zinc finger-like protein; Provisional	98.58
PF14634	44	zf-RING_5: zinc-RING finger domain	98.48
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.47
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	98.31
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.22
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.17
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.14
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	98.12
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.07
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	98.06
COG5219	1525	Uncharacterized conserved protein, contains RING Z	98.06
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	98.06
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	97.99
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	97.99
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	97.99
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	97.92
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	97.86
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	97.82
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	97.66
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	97.65
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.64
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.58
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.48
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	97.4
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	97.4
KOG0825	1134	consensus PHD Zn-finger protein [General function	97.38
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	97.2
KOG4445	368	consensus Uncharacterized conserved protein, conta	97.12
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	97.11
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.01
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	96.93
KOG0297	391	consensus TNF receptor-associated factor [Signal t	96.63
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	96.59
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	96.47
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	96.47
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	96.27
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.25
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	96.18
KOG1002	791	consensus Nucleotide excision repair protein RAD16	95.86
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	95.82
KOG2660	331	consensus Locus-specific chromosome binding protei	95.76
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	95.75
PF04641	260	Rtf2: Rtf2 RING-finger	95.74
KOG0801	205	consensus Predicted E3 ubiquitin ligase [Posttrans	95.7
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	95.65
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	95.55
COG5222	427	Uncharacterized conserved protein, contains RING Z	95.49
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	95.48
PHA02862	156	5L protein; Provisional	95.04
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	95.04
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	94.82
KOG3039	303	consensus Uncharacterized conserved protein [Funct	94.62
KOG1952	950	consensus Transcription factor NF-X1, contains NFX	94.62
PHA03096	284	p28-like protein; Provisional	94.48
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	94.45
COG5152	259	Uncharacterized conserved protein, contains RING a	94.44
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	94.16
PHA02825	162	LAP/PHD finger-like protein; Provisional	94.06
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	93.57
KOG1001	674	consensus Helicase-like transcription factor HLTF/	93.06
COG5236	493	Uncharacterized conserved protein, contains RING Z	92.87
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	92.67
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	92.45
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	92.26
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	92.03
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	91.57
KOG1940	276	consensus Zn-finger protein [General function pred	91.56
COG5175	480	MOT2 Transcriptional repressor [Transcription]	90.72
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	90.19
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	90.14
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	89.63
KOG3002	299	consensus Zn finger protein [General function pred	89.2
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	87.47
KOG3268	234	consensus Predicted E3 ubiquitin ligase [Posttrans	87.19
KOG2034	911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	86.96
KOG3053	293	consensus Uncharacterized conserved protein [Funct	86.77
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	86.62
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	86.61
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	86.39
KOG0825	1134	consensus PHD Zn-finger protein [General function	85.87
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	84.1
KOG1609	323	consensus Protein involved in mRNA turnover and st	83.95
COG5183	1175	SSM4 Protein involved in mRNA turnover and stabili	83.68
KOG0298	1394	consensus DEAD box-containing helicase-like transc	82.6
KOG1812	384	consensus Predicted E3 ubiquitin ligase [Posttrans	81.67
KOG4362	684	consensus Transcriptional regulator BRCA1 [Replica	80.11

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.61  E-value=7.7e-16  Score=158.38  Aligned_cols=80  Identities=36%  Similarity=0.860  Sum_probs=67.9

Q ss_pred             CCCCChHHHhcCCceeeeccccccccccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCC
Q 010258          429 SIPAPNEVVESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPD  508 (514)
Q Consensus       429 p~PApke~IdSLP~~~~~ks~k~~see~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~  508 (514)
                      --..++..++.+|...|+........  ..|+||||+|+.||++++|||+|.||..||++||.+....||+||.++..+.
T Consensus       204 ~~r~~k~~l~~~p~~~f~~~~~~~~~--~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~  281 (348)
T KOG4628|consen  204 RNRLIKRLLKKLPVRTFTKGDDEDAT--DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDS  281 (348)
T ss_pred             hhhhHHHHHhhCCcEEeccccccCCC--ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCCC
Confidence            34567899999999999987665422  6899999999999999999999999999999999974466999999887655


Q ss_pred             CC
Q 010258          509 SL  510 (514)
Q Consensus       509 s~  510 (514)
                      ..
T Consensus       282 ~~  283 (348)
T KOG4628|consen  282 GS  283 (348)
T ss_pred             CC
Confidence            43

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.43  E-value=6.3e-14  Score=103.47  Aligned_cols=43  Identities=51%  Similarity=1.313  Sum_probs=40.0

Q ss_pred             cccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccc
Q 010258          458 QCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCR  501 (514)
Q Consensus       458 EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCR  501 (514)
                      +|+||+++|..++.++.|+|+|.||.+||.+|+++ +.+||+||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence            69999999999999999999999999999999997 78999997

...

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.18  E-value=1.2e-11  Score=122.13  Aligned_cols=72  Identities=25%  Similarity=0.600  Sum_probs=53.6

Q ss_pred             ChHHHhcCCceeeeccccccccccccccccccccccCCe-----eEEeCCCCcccHHHHHHHHHhcCCCCCccccCcC
Q 010258          433 PNEVVESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDS-----VRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDIC  505 (514)
Q Consensus       433 pke~IdSLP~~~~~ks~k~~see~~EC~ICLEefe~gd~-----VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~  505 (514)
                      .+..++.+|..............+.+|+||++.+..+..     .+.++|+|.||..||.+|++. +.+||+||..+.
T Consensus       151 ~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~  227 (238)
T PHA02929        151 YKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI  227 (238)
T ss_pred             hHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence            456777888776543333233456789999999876531     244569999999999999996 889999999775

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=1.9e-11  Score=124.33  Aligned_cols=54  Identities=44%  Similarity=1.028  Sum_probs=48.4

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKP  507 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~  507 (514)
                      ....+|+|||+.|..+|.+++|||.|.||..||++|+...+..||+||.+|+++
T Consensus       321 ~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPPp  374 (374)
T COG5540         321 DKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPPP  374 (374)
T ss_pred             CCCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCCC
Confidence            345789999999999999999999999999999999996578999999988753

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.13  E-value=3.3e-11  Score=98.91  Aligned_cols=45  Identities=40%  Similarity=0.916  Sum_probs=36.0

Q ss_pred             cccccccccccccC----------CeeEEeCCCCcccHHHHHHHHHhcCCCCCccc
Q 010258          456 VAQCYICLLEYEEG----------DSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCR  501 (514)
Q Consensus       456 ~~EC~ICLEefe~g----------d~VrvLPCgHvFH~eCIdkWLke~~~TCPLCR  501 (514)
                      ++.|+||+++|.+.          -.+...+|+|.||..||.+||+. +.+||+||
T Consensus        19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR   73 (73)
T PF12678_consen   19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR   73 (73)
T ss_dssp             CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred             CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence            44599999999422          24667789999999999999996 77999998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=1.6e-09  Score=112.76  Aligned_cols=66  Identities=26%  Similarity=0.712  Sum_probs=48.8

Q ss_pred             HHHhcCCceeeeccccccccccccccccccc-cccCC---------eeEEeCCCCcccHHHHHHHHHhcCCCCCccccCc
Q 010258          435 EVVESLPVKLYTKSQKYQNEEVAQCYICLLE-YEEGD---------SVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDI  504 (514)
Q Consensus       435 e~IdSLP~~~~~ks~k~~see~~EC~ICLEe-fe~gd---------~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V  504 (514)
                      +.-+.+|.....+.    ..++..|.|||++ |+.+.         ....|||||+||.+|+..|+++ ..+||+||.++
T Consensus       270 dl~~~~~t~t~eql----~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~  344 (491)
T COG5243         270 DLNAMYPTATEEQL----TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPV  344 (491)
T ss_pred             HHHhhcchhhhhhh----cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCcc
Confidence            34444444433332    3456789999999 55442         2478999999999999999996 88999999995


Q ss_pred             C
Q 010258          505 C  505 (514)
Q Consensus       505 ~  505 (514)
                      .
T Consensus       345 i  345 (491)
T COG5243         345 I  345 (491)
T ss_pred             c
Confidence            3

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.92  E-value=1e-09  Score=77.46  Aligned_cols=45  Identities=51%  Similarity=1.183  Sum_probs=37.4

Q ss_pred             cccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCc
Q 010258          458 QCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDI  504 (514)
Q Consensus       458 EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V  504 (514)
                      +|+||++.+.  +.+..++|+|.||..|+..|++.....||+|+..+
T Consensus         1 ~C~iC~~~~~--~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFR--EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhh--CceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            4999999983  34566669999999999999996467899999764

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.90  E-value=7.7e-10  Score=106.69  Aligned_cols=55  Identities=29%  Similarity=0.667  Sum_probs=44.5

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHh---------------cCCCCCccccCcCCCCCCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE---------------IHRVCPLCRGDICKPDSLP  511 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke---------------~~~TCPLCRa~V~e~~s~P  511 (514)
                      .+..+|+||++.+.++   ++++|||.||..||.+|+..               ....||+||.+|......|
T Consensus        16 ~~~~~CpICld~~~dP---VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvP   85 (193)
T PLN03208         16 GGDFDCNICLDQVRDP---VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVP   85 (193)
T ss_pred             CCccCCccCCCcCCCc---EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEE
Confidence            3567899999998765   67889999999999999852               1357999999997765544

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=1.1e-09  Score=107.89  Aligned_cols=55  Identities=27%  Similarity=0.666  Sum_probs=45.4

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHh--cCCCCCccccCcCCCCCCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE--IHRVCPLCRGDICKPDSLP  511 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke--~~~TCPLCRa~V~e~~s~P  511 (514)
                      ....+|.|||+.-+++   ++..|||.||+-||.+||..  ....||+||..|..+..+|
T Consensus        45 ~~~FdCNICLd~akdP---VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvP  101 (230)
T KOG0823|consen   45 GGFFDCNICLDLAKDP---VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVP  101 (230)
T ss_pred             CCceeeeeeccccCCC---EEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEe
Confidence            4567899999997775   66669999999999999984  2456899999998877665

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=1.8e-09  Score=109.11  Aligned_cols=52  Identities=31%  Similarity=0.735  Sum_probs=45.3

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDS  509 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s  509 (514)
                      +....|.|||+....+   ..+||||+||..||..|+.+ +..||+||..+.+.+.
T Consensus       237 ~a~~kC~LCLe~~~~p---SaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskv  288 (293)
T KOG0317|consen  237 EATRKCSLCLENRSNP---SATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKV  288 (293)
T ss_pred             CCCCceEEEecCCCCC---CcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCcce
Confidence            4567899999998776   78999999999999999997 7889999998876554

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.79  E-value=3.9e-09  Score=80.02  Aligned_cols=46  Identities=37%  Similarity=0.873  Sum_probs=38.9

Q ss_pred             cccccccccccccCCeeEEeCCCCc-ccHHHHHHHHHhcCCCCCccccCcC
Q 010258          456 VAQCYICLLEYEEGDSVRVLPCHHE-FHKTCVDKWLKEIHRVCPLCRGDIC  505 (514)
Q Consensus       456 ~~EC~ICLEefe~gd~VrvLPCgHv-FH~eCIdkWLke~~~TCPLCRa~V~  505 (514)
                      +..|.||++....   +..+||||. ||..|+..|++. ...||+||++|.
T Consensus         2 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~   48 (50)
T PF13920_consen    2 DEECPICFENPRD---VVLLPCGHLCFCEECAERLLKR-KKKCPICRQPIE   48 (50)
T ss_dssp             HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHT-TSBBTTTTBB-S
T ss_pred             cCCCccCCccCCc---eEEeCCCChHHHHHHhHHhccc-CCCCCcCChhhc
Confidence            4579999998654   789999999 999999999995 889999999885

...

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.74  E-value=6.1e-09  Score=75.49  Aligned_cols=39  Identities=46%  Similarity=1.103  Sum_probs=33.8

Q ss_pred             ccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCcc
Q 010258          459 CYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLC  500 (514)
Q Consensus       459 C~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLC  500 (514)
                      |+||++.+.+  .++.++|||.||.+||.+|++. +..||+|
T Consensus         1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEK-NPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred             CCCCCCcccC--cCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence            8999998777  5688999999999999999997 8899998

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=98.74  E-value=6.4e-09  Score=89.00  Aligned_cols=52  Identities=33%  Similarity=0.749  Sum_probs=40.9

Q ss_pred             ccccccccccccc--------cCC--eeEEeCCCCcccHHHHHHHHHh--cCCCCCccccCcCC
Q 010258          455 EVAQCYICLLEYE--------EGD--SVRVLPCHHEFHKTCVDKWLKE--IHRVCPLCRGDICK  506 (514)
Q Consensus       455 e~~EC~ICLEefe--------~gd--~VrvLPCgHvFH~eCIdkWLke--~~~TCPLCRa~V~e  506 (514)
                      +++.|.||...|+        +++  .++.-.|+|.||..||.+||..  .+..||+||+....
T Consensus        20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~   83 (85)
T PF12861_consen   20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF   83 (85)
T ss_pred             CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence            3678999999987        222  3555669999999999999995  35789999997643

>smart00504 Ubox Modified RING finger domain

Probab=98.74  E-value=9.7e-09  Score=79.62  Aligned_cols=52  Identities=23%  Similarity=0.517  Sum_probs=45.6

Q ss_pred             ccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCCCC
Q 010258          457 AQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS  512 (514)
Q Consensus       457 ~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~Pn  512 (514)
                      ..|+||++.+.++   ++++|||+|+..||.+|+++ +.+||+|+..+...+..++
T Consensus         2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~   53 (63)
T smart00504        2 FLCPISLEVMKDP---VILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPN   53 (63)
T ss_pred             cCCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeC
Confidence            3599999999886   77899999999999999997 8899999999877766654

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=9.1e-09  Score=98.34  Aligned_cols=56  Identities=30%  Similarity=0.552  Sum_probs=45.9

Q ss_pred             ccccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCC
Q 010258          453 NEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSL  510 (514)
Q Consensus       453 see~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~  510 (514)
                      .+..+.|+|||+.|..... +...|||+||.+||..-|+. ...||+|+..|..+...
T Consensus       128 ~~~~~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~k~~~  183 (187)
T KOG0320|consen  128 KEGTYKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITHKQFH  183 (187)
T ss_pred             cccccCCCceecchhhccc-cccccchhHHHHHHHHHHHh-CCCCCCcccccchhhhe
Confidence            3556789999999887522 44679999999999999996 77999999988777544

>smart00184 RING Ring finger

Probab=98.63  E-value=2.6e-08  Score=67.88  Aligned_cols=39  Identities=49%  Similarity=1.163  Sum_probs=33.4

Q ss_pred             ccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCcc
Q 010258          459 CYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLC  500 (514)
Q Consensus       459 C~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLC  500 (514)
                      |+||++..   .....++|+|.||..||..|++.....||+|
T Consensus         1 C~iC~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEEL---KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCC---CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            88999983   3468899999999999999998546789998

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.63  E-value=2e-08  Score=74.88  Aligned_cols=39  Identities=38%  Similarity=0.924  Sum_probs=30.8

Q ss_pred             ccccccccccCCeeEEeCCCCcccHHHHHHHHHhcC---CCCCcc
Q 010258          459 CYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIH---RVCPLC  500 (514)
Q Consensus       459 C~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~---~TCPLC  500 (514)
                      |+||++.|.++   +.|+|||.|+..||..|+++.+   ..||+|
T Consensus         1 CpiC~~~~~~P---v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDP---VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSE---EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCc---cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            89999999997   8999999999999999998533   369998

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=1.4e-08  Score=109.80  Aligned_cols=51  Identities=35%  Similarity=0.897  Sum_probs=44.6

Q ss_pred             cccccccccccccccCCe--eEEeCCCCcccHHHHHHHHHhcCCCCCccccCcC
Q 010258          454 EEVAQCYICLLEYEEGDS--VRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDIC  505 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~--VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~  505 (514)
                      ..+..|+||++++..+..  ...|||+|+||..|+..|+++ ..+||+||..+.
T Consensus       289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~~  341 (543)
T KOG0802|consen  289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVLY  341 (543)
T ss_pred             hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhhh
Confidence            346789999999988665  689999999999999999997 889999999543

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.59  E-value=2.9e-08  Score=71.76  Aligned_cols=40  Identities=48%  Similarity=1.128  Sum_probs=35.0

Q ss_pred             ccccccccccCCeeEEeCCCCcccHHHHHHHHH-hcCCCCCcc
Q 010258          459 CYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLK-EIHRVCPLC  500 (514)
Q Consensus       459 C~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLk-e~~~TCPLC  500 (514)
                      |+||++.+..+  +..++|+|.||..||.+|++ .....||+|
T Consensus         1 C~iC~~~~~~~--~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDP--VILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSE--EEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCC--CEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            89999998775  46899999999999999999 446789998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>PHA02926 zinc finger-like protein; Provisional

Probab=98.58  E-value=1.6e-08  Score=99.65  Aligned_cols=53  Identities=25%  Similarity=0.534  Sum_probs=39.1

Q ss_pred             ccccccccccccccccCC-----e-eEEeCCCCcccHHHHHHHHHhc-----CCCCCccccCcC
Q 010258          453 NEEVAQCYICLLEYEEGD-----S-VRVLPCHHEFHKTCVDKWLKEI-----HRVCPLCRGDIC  505 (514)
Q Consensus       453 see~~EC~ICLEefe~gd-----~-VrvLPCgHvFH~eCIdkWLke~-----~~TCPLCRa~V~  505 (514)
                      ...+.+|+|||+....+.     . -...+|+|.||..||..|.+..     ...||+||..+.
T Consensus       167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~  230 (242)
T PHA02926        167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR  230 (242)
T ss_pred             ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence            345688999999864321     1 2344599999999999999842     245999999764

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.48  E-value=8.6e-08  Score=71.39  Aligned_cols=44  Identities=34%  Similarity=0.801  Sum_probs=38.2

Q ss_pred             cccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCcccc
Q 010258          458 QCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRG  502 (514)
Q Consensus       458 EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa  502 (514)
                      .|.||++.|.......+++|||.||..||..+.. ....||+||.
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~-~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKG-KSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcC-CCCCCcCCCC
Confidence            4999999996556789999999999999999994 3679999984

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.47  E-value=8.7e-08  Score=101.10  Aligned_cols=54  Identities=24%  Similarity=0.591  Sum_probs=45.0

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLP  511 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~P  511 (514)
                      +....|+||++.|..+   ++++|+|.||..||..|+.. ...||+|+..+......+
T Consensus        24 e~~l~C~IC~d~~~~P---vitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~   77 (397)
T TIGR00599        24 DTSLRCHICKDFFDVP---VLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRS   77 (397)
T ss_pred             ccccCCCcCchhhhCc---cCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCcc
Confidence            4567899999998775   57899999999999999986 678999999887654433

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=98.31  E-value=2.4e-07  Score=75.85  Aligned_cols=55  Identities=20%  Similarity=0.481  Sum_probs=43.4

Q ss_pred             ccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCCCC
Q 010258          455 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS  512 (514)
Q Consensus       455 e~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~Pn  512 (514)
                      +...|+||.+-+.++   +++||||.|.+.||..||++.+.+||+|+..+...+..|+
T Consensus         3 ~~f~CpIt~~lM~dP---Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn   57 (73)
T PF04564_consen    3 DEFLCPITGELMRDP---VILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPN   57 (73)
T ss_dssp             GGGB-TTTSSB-SSE---EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-
T ss_pred             cccCCcCcCcHhhCc---eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceEC
Confidence            456799999999997   8899999999999999999767899999999988777665

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=5.6e-07  Score=90.52  Aligned_cols=53  Identities=32%  Similarity=0.709  Sum_probs=44.0

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHH-HHHhcCCCCCccccCcCCCCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDK-WLKEIHRVCPLCRGDICKPDS  509 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdk-WLke~~~TCPLCRa~V~e~~s  509 (514)
                      ..+..|+||++..+.+   ..++|||+||..||.. |-++.-..||+||+.+..++.
T Consensus       213 ~~d~kC~lC~e~~~~p---s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v  266 (271)
T COG5574         213 LADYKCFLCLEEPEVP---SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV  266 (271)
T ss_pred             ccccceeeeecccCCc---ccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence            4578899999987775   8899999999999999 998633459999998876554

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=6.4e-07  Score=82.08  Aligned_cols=45  Identities=36%  Similarity=0.810  Sum_probs=40.5

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCcccc
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRG  502 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa  502 (514)
                      .+...|+||++.|..+   .+|||+|.||..||..|+. ....||.||.
T Consensus        11 ~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~   55 (386)
T KOG2177|consen   11 QEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWE-GPLSCPVCRP   55 (386)
T ss_pred             cccccChhhHHHhhcC---ccccccchHhHHHHHHhcC-CCcCCcccCC
Confidence            4567899999999997   8999999999999999998 5678999994

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=1e-06  Score=94.92  Aligned_cols=53  Identities=32%  Similarity=0.551  Sum_probs=42.0

Q ss_pred             cccccccccccccCCeeEEeCCCCcccHHHHHHHHHh----cCCCCCccccCcCCCCCCC
Q 010258          456 VAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE----IHRVCPLCRGDICKPDSLP  511 (514)
Q Consensus       456 ~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke----~~~TCPLCRa~V~e~~s~P  511 (514)
                      +..|+|||++...+   ..+.|||+||..||-.++..    ....||+|+..|..+++.|
T Consensus       186 ~~~CPICL~~~~~p---~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~p  242 (513)
T KOG2164|consen  186 DMQCPICLEPPSVP---VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLP  242 (513)
T ss_pred             CCcCCcccCCCCcc---cccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceee
Confidence            56799999987664   44559999999999998863    2457999999998766554

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.12  E-value=6.2e-07  Score=76.00  Aligned_cols=50  Identities=34%  Similarity=0.796  Sum_probs=37.5

Q ss_pred             cccccccccccc--------cCCe--eEEeCCCCcccHHHHHHHHHh--cCCCCCccccCcC
Q 010258          456 VAQCYICLLEYE--------EGDS--VRVLPCHHEFHKTCVDKWLKE--IHRVCPLCRGDIC  505 (514)
Q Consensus       456 ~~EC~ICLEefe--------~gd~--VrvLPCgHvFH~eCIdkWLke--~~~TCPLCRa~V~  505 (514)
                      ++.|.||..+|.        ++|.  ++.--|.|.||..||.+||..  .+..||+||+...
T Consensus        20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence            458999999996        2222  222239999999999999983  2457999998754

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.07  E-value=2.7e-06  Score=64.35  Aligned_cols=39  Identities=38%  Similarity=0.796  Sum_probs=23.0

Q ss_pred             ccccccccccCC-eeEEeCCCCcccHHHHHHHHHhc---CCCCC
Q 010258          459 CYICLLEYEEGD-SVRVLPCHHEFHKTCVDKWLKEI---HRVCP  498 (514)
Q Consensus       459 C~ICLEefe~gd-~VrvLPCgHvFH~eCIdkWLke~---~~TCP  498 (514)
                      |+||.+ |...+ ..++|+|||.|+.+||++|++..   ...||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            899999 76543 46889999999999999999952   33576

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=98.06  E-value=2.9e-06  Score=72.53  Aligned_cols=51  Identities=35%  Similarity=0.720  Sum_probs=39.0

Q ss_pred             cccccccccccc-----------cCCe--eEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCC
Q 010258          456 VAQCYICLLEYE-----------EGDS--VRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKP  507 (514)
Q Consensus       456 ~~EC~ICLEefe-----------~gd~--VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~  507 (514)
                      .+.|+||...|.           .+++  ++.--|.|.||..||.+||.. +..||+||+.....
T Consensus        20 id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~~~   83 (88)
T COG5194          20 IDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWVLA   83 (88)
T ss_pred             cchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeEEe
Confidence            356888887763           3332  444459999999999999997 88999999876443

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=98.06  E-value=1.1e-06  Score=99.79  Aligned_cols=51  Identities=37%  Similarity=0.879  Sum_probs=39.6

Q ss_pred             ccccccccccccccccCCeeEEeC------CCCcccHHHHHHHHHh-cCCCCCccccCcC
Q 010258          453 NEEVAQCYICLLEYEEGDSVRVLP------CHHEFHKTCVDKWLKE-IHRVCPLCRGDIC  505 (514)
Q Consensus       453 see~~EC~ICLEefe~gd~VrvLP------CgHvFH~eCIdkWLke-~~~TCPLCRa~V~  505 (514)
                      -...++|+||+..+..-+  +.||      |.|.||..|+.+|++. .+.+||+||..++
T Consensus      1466 fsG~eECaICYsvL~~vd--r~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1466 FSGHEECAICYSVLDMVD--RSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             cCCcchhhHHHHHHHHHh--ccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            345789999998776211  3343      9999999999999995 4578999998775

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.06  E-value=1.6e-06  Score=93.44  Aligned_cols=52  Identities=29%  Similarity=0.842  Sum_probs=40.8

Q ss_pred             ccccccccccccccCC---e-----------eEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCC
Q 010258          455 EVAQCYICLLEYEEGD---S-----------VRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICK  506 (514)
Q Consensus       455 e~~EC~ICLEefe~gd---~-----------VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e  506 (514)
                      ....|+|||.++..-.   .           ....||.|+||..|+..|....+-.||+||.+++.
T Consensus       570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            4567999999875221   1           23569999999999999999656699999998753

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=97.99  E-value=5.4e-06  Score=63.93  Aligned_cols=43  Identities=28%  Similarity=0.845  Sum_probs=33.6

Q ss_pred             cccccccccccCCeeEEeCCC-----CcccHHHHHHHHHhc-CCCCCccc
Q 010258          458 QCYICLLEYEEGDSVRVLPCH-----HEFHKTCVDKWLKEI-HRVCPLCR  501 (514)
Q Consensus       458 EC~ICLEefe~gd~VrvLPCg-----HvFH~eCIdkWLke~-~~TCPLCR  501 (514)
                      .|.||++ ...++...++||.     |.||..|+.+|+... +.+||+|+
T Consensus         1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            4899999 4444455688985     899999999999852 45899995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=3.3e-06  Score=75.10  Aligned_cols=50  Identities=34%  Similarity=0.695  Sum_probs=37.5

Q ss_pred             cccccccccccccc-------------cCCe-eEEeCCCCcccHHHHHHHHHhcCCCCCccccCc
Q 010258          454 EEVAQCYICLLEYE-------------EGDS-VRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDI  504 (514)
Q Consensus       454 ee~~EC~ICLEefe-------------~gd~-VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V  504 (514)
                      ...+.|+||...+-             .++- |.---|.|.||..||.+||++ +..||+|-.+-
T Consensus        44 i~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlkt-r~vCPLdn~eW  107 (114)
T KOG2930|consen   44 IVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKT-RNVCPLDNKEW  107 (114)
T ss_pred             eeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhh-cCcCCCcCcce
Confidence            34667999988762             1112 334449999999999999997 88999997653

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=97.99  E-value=4.8e-06  Score=85.66  Aligned_cols=53  Identities=25%  Similarity=0.476  Sum_probs=39.9

Q ss_pred             cccccccccc-cccCCe-eEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCC
Q 010258          456 VAQCYICLLE-YEEGDS-VRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPD  508 (514)
Q Consensus       456 ~~EC~ICLEe-fe~gd~-VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~  508 (514)
                      +..|+||... |..++. +.+-+|||.||..||+.++......||.|+..+....
T Consensus         3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~   57 (309)
T TIGR00570         3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN   57 (309)
T ss_pred             CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence            3579999996 444432 2222799999999999977655678999998887665

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=97.92  E-value=2.3e-06  Score=70.25  Aligned_cols=50  Identities=26%  Similarity=0.650  Sum_probs=23.9

Q ss_pred             cccccccccccccCCe--eEEe---CCCCcccHHHHHHHHHhc----------CCCCCccccCcC
Q 010258          456 VAQCYICLLEYEEGDS--VRVL---PCHHEFHKTCVDKWLKEI----------HRVCPLCRGDIC  505 (514)
Q Consensus       456 ~~EC~ICLEefe~gd~--VrvL---PCgHvFH~eCIdkWLke~----------~~TCPLCRa~V~  505 (514)
                      ..+|.||+..+..++.  ..+-   .|++.||..||.+||...          ...||.|+.+|.
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            3579999998763332  2222   399999999999999841          125999999874

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=97.86  E-value=5e-06  Score=86.53  Aligned_cols=53  Identities=26%  Similarity=0.674  Sum_probs=46.2

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSL  510 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~  510 (514)
                      ++...|.||.+-|..+   .+.||+|.||.-||..+|.. +..||+|+..+.+....
T Consensus        21 D~lLRC~IC~eyf~ip---~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~Lr   73 (442)
T KOG0287|consen   21 DDLLRCGICFEYFNIP---MITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDLR   73 (442)
T ss_pred             HHHHHHhHHHHHhcCc---eeccccchHHHHHHHHHhcc-CCCCCceecccchhhhh
Confidence            3456799999999886   88999999999999999996 89999999998876543

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=3.9e-06  Score=85.09  Aligned_cols=58  Identities=21%  Similarity=0.545  Sum_probs=45.0

Q ss_pred             cccccccccccccccCC-------eeEEeCCCCcccHHHHHHHHHh-cCCCCCccccCcCCCCCCC
Q 010258          454 EEVAQCYICLLEYEEGD-------SVRVLPCHHEFHKTCVDKWLKE-IHRVCPLCRGDICKPDSLP  511 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd-------~VrvLPCgHvFH~eCIdkWLke-~~~TCPLCRa~V~e~~s~P  511 (514)
                      .++..|+||-..+....       ..-.|.|+|+||..||..|--- .+.+||.|+..|-.+..+.
T Consensus       222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfs  287 (328)
T KOG1734|consen  222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFS  287 (328)
T ss_pred             CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhcc
Confidence            35678999998876543       4568999999999999999852 2679999999886555443

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=97.66  E-value=1.9e-05  Score=81.02  Aligned_cols=51  Identities=27%  Similarity=0.661  Sum_probs=44.0

Q ss_pred             ccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCC
Q 010258          455 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDS  509 (514)
Q Consensus       455 e~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s  509 (514)
                      .-..|-||-+-|..+   ...+|||.||.-||...|.. +..||+||.+.++...
T Consensus        24 s~lrC~IC~~~i~ip---~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrl   74 (391)
T COG5432          24 SMLRCRICDCRISIP---CETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRL   74 (391)
T ss_pred             hHHHhhhhhheeecc---eecccccchhHHHHHHHhcC-CCCCccccccHHhhhc
Confidence            345799999999886   78889999999999999996 8899999998776543

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.65  E-value=1.9e-05  Score=83.27  Aligned_cols=51  Identities=29%  Similarity=0.782  Sum_probs=38.2

Q ss_pred             cccccccccccccCCeeEEeC-CCCcccHHHHHHHHHhc--CCCCCccccCcCC
Q 010258          456 VAQCYICLLEYEEGDSVRVLP-CHHEFHKTCVDKWLKEI--HRVCPLCRGDICK  506 (514)
Q Consensus       456 ~~EC~ICLEefe~gd~VrvLP-CgHvFH~eCIdkWLke~--~~TCPLCRa~V~e  506 (514)
                      -++|.||.+-+.....+.-+. |||+||..|+..|+...  ++.||+|+-.+..
T Consensus         4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~   57 (465)
T KOG0827|consen    4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQE   57 (465)
T ss_pred             cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccc
Confidence            357999966555555566666 99999999999999842  3589999955543

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.64  E-value=2e-05  Score=80.91  Aligned_cols=50  Identities=26%  Similarity=0.464  Sum_probs=41.8

Q ss_pred             cccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCC
Q 010258          456 VAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPD  508 (514)
Q Consensus       456 ~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~  508 (514)
                      ..+|+||+...--+   +.|+|+|.||..||..-.+....+||+||.+|.+.-
T Consensus         7 ~~eC~IC~nt~n~P---v~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i   56 (324)
T KOG0824|consen    7 KKECLICYNTGNCP---VNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTI   56 (324)
T ss_pred             CCcceeeeccCCcC---ccccccchhhhhhhcchhhcCCCCCceecCCCCcch
Confidence            45799999986665   889999999999999866655788999999987653

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.58  E-value=1.3e-05  Score=83.68  Aligned_cols=54  Identities=30%  Similarity=0.544  Sum_probs=45.2

Q ss_pred             ccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCC
Q 010258          455 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSL  510 (514)
Q Consensus       455 e~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~  510 (514)
                      .+..|+|||+-+..-  +....|.|.||.+||.+-++..+..||.||..+..+..+
T Consensus        42 ~~v~c~icl~llk~t--mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsL   95 (381)
T KOG0311|consen   42 IQVICPICLSLLKKT--MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSL   95 (381)
T ss_pred             hhhccHHHHHHHHhh--cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccC
Confidence            356799999987763  344449999999999999998889999999998777655

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.48  E-value=4.3e-05  Score=81.12  Aligned_cols=53  Identities=36%  Similarity=0.792  Sum_probs=41.5

Q ss_pred             ccccccccccccccCC--eeEEeCCCCcccHHHHHHHHHhc-CCCCCccccCcCCC
Q 010258          455 EVAQCYICLLEYEEGD--SVRVLPCHHEFHKTCVDKWLKEI-HRVCPLCRGDICKP  507 (514)
Q Consensus       455 e~~EC~ICLEefe~gd--~VrvLPCgHvFH~eCIdkWLke~-~~TCPLCRa~V~e~  507 (514)
                      ....|+||++.|+-.-  .++.|.|||.|...||.+||.+. ...||.|..+..+.
T Consensus         3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr   58 (463)
T KOG1645|consen    3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKR   58 (463)
T ss_pred             ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHH
Confidence            3567999999997543  36778899999999999999632 34799998765543

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=97.40  E-value=5.5e-05  Score=81.00  Aligned_cols=48  Identities=31%  Similarity=0.834  Sum_probs=39.2

Q ss_pred             ccccccccccccccCC-eeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcC
Q 010258          455 EVAQCYICLLEYEEGD-SVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDIC  505 (514)
Q Consensus       455 e~~EC~ICLEefe~gd-~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~  505 (514)
                      +.-+|+|||+.+...- .++...|.|.||-.|+.+|-.   .+||+||.-..
T Consensus       174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q~  222 (493)
T KOG0804|consen  174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQS  222 (493)
T ss_pred             cCCCcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhcC
Confidence            4457999999987653 356677999999999999986   59999997554

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.40  E-value=0.0001  Score=76.98  Aligned_cols=49  Identities=35%  Similarity=0.733  Sum_probs=40.3

Q ss_pred             cccccccccccccccCCeeEEeCCCCc-ccHHHHHHHHHhcCCCCCccccCcCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHE-FHKTCVDKWLKEIHRVCPLCRGDICK  506 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHv-FH~eCIdkWLke~~~TCPLCRa~V~e  506 (514)
                      +...+|.|||.+-.+   +.+|||.|. .|..|.+..--+ +..||+||++|..
T Consensus       288 ~~gkeCVIClse~rd---t~vLPCRHLCLCs~Ca~~Lr~q-~n~CPICRqpi~~  337 (349)
T KOG4265|consen  288 ESGKECVICLSESRD---TVVLPCRHLCLCSGCAKSLRYQ-TNNCPICRQPIEE  337 (349)
T ss_pred             cCCCeeEEEecCCcc---eEEecchhhehhHhHHHHHHHh-hcCCCccccchHh
Confidence            446889999998666   699999997 799999886643 6789999998854

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=97.38  E-value=3.8e-05  Score=86.48  Aligned_cols=52  Identities=25%  Similarity=0.512  Sum_probs=44.6

Q ss_pred             cccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCC
Q 010258          456 VAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPD  508 (514)
Q Consensus       456 ~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~  508 (514)
                      ...|+||+..+.+.......+|+|.||.+||..|-+ ...+||+||..+....
T Consensus       123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR-~aqTCPiDR~EF~~v~  174 (1134)
T KOG0825|consen  123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR-CAQTCPVDRGEFGEVK  174 (1134)
T ss_pred             hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhh-hcccCchhhhhhheee
Confidence            456999999998887777788999999999999999 4789999999775544

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.20  E-value=6.9e-05  Score=60.40  Aligned_cols=47  Identities=28%  Similarity=0.626  Sum_probs=36.5

Q ss_pred             cccccccccccccCCeeEEeCCCCc-ccHHHHHHHHHhcCCCCCccccCcC
Q 010258          456 VAQCYICLLEYEEGDSVRVLPCHHE-FHKTCVDKWLKEIHRVCPLCRGDIC  505 (514)
Q Consensus       456 ~~EC~ICLEefe~gd~VrvLPCgHv-FH~eCIdkWLke~~~TCPLCRa~V~  505 (514)
                      .++|.||++.-.+.   +..-|||. .|.+|-.+.++..+..||+||++|.
T Consensus         7 ~dECTICye~pvds---VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    7 SDECTICYEHPVDS---VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             ccceeeeccCcchH---HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            46899999875542   44559996 7889988777656899999999873

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=97.12  E-value=0.00013  Score=75.14  Aligned_cols=50  Identities=36%  Similarity=0.864  Sum_probs=41.7

Q ss_pred             cccccccccccccCCeeEEeCCCCcccHHHHHHHHHh----------------------cCCCCCccccCcC
Q 010258          456 VAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE----------------------IHRVCPLCRGDIC  505 (514)
Q Consensus       456 ~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke----------------------~~~TCPLCRa~V~  505 (514)
                      ..+|.|||--|..++...+.+|-|.||..|+.++|..                      ....||+||..|.
T Consensus       115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~  186 (368)
T KOG4445|consen  115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK  186 (368)
T ss_pred             CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence            4469999999999999999999999999999876642                      1347999998774

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.11  E-value=0.00023  Score=74.42  Aligned_cols=51  Identities=31%  Similarity=0.825  Sum_probs=38.2

Q ss_pred             ccccccccccccccCCe----eEEeC-CCCcccHHHHHHHHHhc------CCCCCccccCcC
Q 010258          455 EVAQCYICLLEYEEGDS----VRVLP-CHHEFHKTCVDKWLKEI------HRVCPLCRGDIC  505 (514)
Q Consensus       455 e~~EC~ICLEefe~gd~----VrvLP-CgHvFH~eCIdkWLke~------~~TCPLCRa~V~  505 (514)
                      .+.+|.|||+...+...    -.+|| |.|.||..||.+|-+..      .+.||.||....
T Consensus       160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~  221 (344)
T KOG1039|consen  160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS  221 (344)
T ss_pred             ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence            46689999998766430    23445 99999999999999531      368999997553

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.01  E-value=0.00021  Score=80.37  Aligned_cols=50  Identities=24%  Similarity=0.662  Sum_probs=40.7

Q ss_pred             cccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCC
Q 010258          456 VAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPD  508 (514)
Q Consensus       456 ~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~  508 (514)
                      -..|++|-..+.+   +++..|+|+||..||.+-+......||.|-..+-.-+
T Consensus       643 ~LkCs~Cn~R~Kd---~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD  692 (698)
T KOG0978|consen  643 LLKCSVCNTRWKD---AVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAND  692 (698)
T ss_pred             ceeCCCccCchhh---HHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence            4579999977666   4566699999999999999876889999988765444

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.93  E-value=0.00042  Score=73.74  Aligned_cols=49  Identities=31%  Similarity=0.749  Sum_probs=42.5

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICK  506 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e  506 (514)
                      ..+.+|.||+..+..+   +.+||||.||..||++-+.+ ...||+||..+.+
T Consensus        82 ~sef~c~vc~~~l~~p---v~tpcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   82 RSEFECCVCSRALYPP---VVTPCGHSFCLECLDRSLDQ-ETECPLCRDELVE  130 (398)
T ss_pred             cchhhhhhhHhhcCCC---ccccccccccHHHHHHHhcc-CCCCccccccccc
Confidence            3467899999988886   77799999999999998874 8899999998876

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=96.63  E-value=0.00088  Score=70.78  Aligned_cols=55  Identities=31%  Similarity=0.759  Sum_probs=45.8

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLP  511 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~P  511 (514)
                      ++...|+||+..+.++  +....|||.||..||..|+.. +..||.|+..+.....+|
T Consensus        19 ~~~l~C~~C~~vl~~p--~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~   73 (391)
T KOG0297|consen   19 DENLLCPICMSVLRDP--VQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELP   73 (391)
T ss_pred             cccccCccccccccCC--CCCCCCCCcccccccchhhcc-CcCCcccccccchhhccC
Confidence            4567899999998886  222589999999999999997 889999998887666655

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=96.59  E-value=0.0013  Score=78.22  Aligned_cols=66  Identities=30%  Similarity=0.577  Sum_probs=47.9

Q ss_pred             cCCceeeeccccccccccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhc---------CCCCCccccCcC
Q 010258          439 SLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEI---------HRVCPLCRGDIC  505 (514)
Q Consensus       439 SLP~~~~~ks~k~~see~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~---------~~TCPLCRa~V~  505 (514)
                      -||....++....+ +.++.|.||+.+--...+...|.|+|+||..|...-|.+.         --.||+|+.+|.
T Consensus      3470 CLPCl~Cdks~tkQ-D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3470 CLPCLHCDKSATKQ-DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred             cccccccChhhhhc-ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence            35555444433322 5577899999987666778999999999999998766531         127999998874

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=96.47  E-value=0.00067  Score=56.00  Aligned_cols=51  Identities=27%  Similarity=0.593  Sum_probs=25.8

Q ss_pred             ccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCC
Q 010258          455 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSL  510 (514)
Q Consensus       455 e~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~  510 (514)
                      ....|++|.+-+..+  |....|.|.||..||..-+.   ..||+|+.+.-..+..
T Consensus         6 ~lLrCs~C~~~l~~p--v~l~~CeH~fCs~Ci~~~~~---~~CPvC~~Paw~qD~~   56 (65)
T PF14835_consen    6 ELLRCSICFDILKEP--VCLGGCEHIFCSSCIRDCIG---SECPVCHTPAWIQDIQ   56 (65)
T ss_dssp             HTTS-SSS-S--SS---B---SSS--B-TTTGGGGTT---TB-SSS--B-S-SS--
T ss_pred             HhcCCcHHHHHhcCC--ceeccCccHHHHHHhHHhcC---CCCCCcCChHHHHHHH
Confidence            345699999997775  55667999999999988554   4699999988666543

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=96.47  E-value=0.0012  Score=52.64  Aligned_cols=43  Identities=26%  Similarity=0.589  Sum_probs=29.5

Q ss_pred             ccccccccccccccCCeeEEeCCCCcccHHHHHHHHHh-cCCCCCc
Q 010258          455 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE-IHRVCPL  499 (514)
Q Consensus       455 e~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke-~~~TCPL  499 (514)
                      -...|+|.+..|+++  |+...|+|.|-++.|..||+. ....||+
T Consensus        10 ~~~~CPiT~~~~~~P--V~s~~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen   10 ISLKCPITLQPFEDP--VKSKKCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             --SB-TTTSSB-SSE--EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             eccCCCCcCChhhCC--cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence            356799999998875  777889999999999999943 3457998

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=96.27  E-value=0.0017  Score=60.20  Aligned_cols=36  Identities=22%  Similarity=0.574  Sum_probs=31.0

Q ss_pred             cccccccccccccCCeeEEeCCC------CcccHHHHHHHHH
Q 010258          456 VAQCYICLLEYEEGDSVRVLPCH------HEFHKTCVDKWLK  491 (514)
Q Consensus       456 ~~EC~ICLEefe~gd~VrvLPCg------HvFH~eCIdkWLk  491 (514)
                      ..+|.||++.+...+.|+.++|+      |.||.+|+.+|-.
T Consensus        26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~   67 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR   67 (134)
T ss_pred             CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence            56799999999886668888887      8999999999954

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.25  E-value=0.0016  Score=69.43  Aligned_cols=48  Identities=31%  Similarity=0.671  Sum_probs=39.7

Q ss_pred             ccccccccccccccCC-eeEEeCCCCcccHHHHHHHHHh-cCCCCCcccc
Q 010258          455 EVAQCYICLLEYEEGD-SVRVLPCHHEFHKTCVDKWLKE-IHRVCPLCRG  502 (514)
Q Consensus       455 e~~EC~ICLEefe~gd-~VrvLPCgHvFH~eCIdkWLke-~~~TCPLCRa  502 (514)
                      -..-|..|-+.|...+ .+..|||.|+||..|+...|.+ ...+||-||.
T Consensus       364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk  413 (518)
T KOG1941|consen  364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK  413 (518)
T ss_pred             HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            3456999999987654 4889999999999999999974 3458999994

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=96.18  E-value=0.0019  Score=69.05  Aligned_cols=49  Identities=29%  Similarity=0.756  Sum_probs=39.3

Q ss_pred             ccccccccccccCCeeEEeCCCCcccHHHHHHHHHhc-CCCCCccccCcCCCC
Q 010258          457 AQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEI-HRVCPLCRGDICKPD  508 (514)
Q Consensus       457 ~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~-~~TCPLCRa~V~e~~  508 (514)
                      .-|-||-+.-   ..|.+-||||..|..|+..|-... ..+||.||.+|....
T Consensus       370 eLCKICaend---KdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte  419 (563)
T KOG1785|consen  370 ELCKICAEND---KDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE  419 (563)
T ss_pred             HHHHHhhccC---CCcccccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence            4599997753   347889999999999999999642 568999999875543

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=95.86  E-value=0.0067  Score=66.83  Aligned_cols=56  Identities=23%  Similarity=0.562  Sum_probs=43.7

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHh----cCCCCCccccCcCCCCCCCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE----IHRVCPLCRGDICKPDSLPS  512 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke----~~~TCPLCRa~V~e~~s~Pn  512 (514)
                      ....+|-+|-++-++.   ....|.|.||+.||..++..    .+-+||+|-..+.-..+-|.
T Consensus       534 k~~~~C~lc~d~aed~---i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~a  593 (791)
T KOG1002|consen  534 KGEVECGLCHDPAEDY---IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPA  593 (791)
T ss_pred             cCceeecccCChhhhh---HhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchh
Confidence            4567899999886653   66779999999999988863    35689999988776655543

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.82  E-value=0.0064  Score=61.12  Aligned_cols=52  Identities=29%  Similarity=0.659  Sum_probs=41.8

Q ss_pred             cccccccccccccCCeeEEeCCCCcccHHHHHHHHHhc-------CCCCCccccCcCCCC
Q 010258          456 VAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEI-------HRVCPLCRGDICKPD  508 (514)
Q Consensus       456 ~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~-------~~TCPLCRa~V~e~~  508 (514)
                      .-.|..|-..+..+|.+ .|-|-|+||.+|+..|-...       ...||.|-.+|..+.
T Consensus        50 ~pNC~LC~t~La~gdt~-RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~  108 (299)
T KOG3970|consen   50 NPNCRLCNTPLASGDTT-RLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPI  108 (299)
T ss_pred             CCCCceeCCccccCcce-eehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCc
Confidence            34599999999988655 45699999999999999741       337999999887654

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=95.76  E-value=0.0035  Score=65.32  Aligned_cols=56  Identities=29%  Similarity=0.583  Sum_probs=43.0

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCCCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS  512 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~Pn  512 (514)
                      ....+|.+|-.-|-+.  ..+.-|-|.||+.||.+.|.. ...||.|...|-...+..+
T Consensus        13 n~~itC~LC~GYliDA--TTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~n   68 (331)
T KOG2660|consen   13 NPHITCRLCGGYLIDA--TTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLN   68 (331)
T ss_pred             ccceehhhccceeecc--hhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCcccccc
Confidence            3456799997766553  334449999999999999997 8899999988766654443

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=95.75  E-value=0.022  Score=59.67  Aligned_cols=46  Identities=20%  Similarity=0.391  Sum_probs=36.5

Q ss_pred             cccccccccccccccCCeeEEeC-CCCcccHHHHHHHHHhcCCCCCccccC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLP-CHHEFHKTCVDKWLKEIHRVCPLCRGD  503 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLP-CgHvFH~eCIdkWLke~~~TCPLCRa~  503 (514)
                      .+...|+||+.....+   .+|. -|-+||..||...+.+ +..||+--.+
T Consensus       298 ~~~~~CpvClk~r~Np---tvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~~p  344 (357)
T KOG0826|consen  298 PDREVCPVCLKKRQNP---TVLEVSGYVFCYPCIFSYVVN-YGHCPVTGYP  344 (357)
T ss_pred             CccccChhHHhccCCC---ceEEecceEEeHHHHHHHHHh-cCCCCccCCc
Confidence            4566899999997776   3333 5999999999999996 8999985443

>PF04641 Rtf2: Rtf2 RING-finger

Probab=95.74  E-value=0.015  Score=58.19  Aligned_cols=55  Identities=22%  Similarity=0.454  Sum_probs=42.8

Q ss_pred             cccccccccccccccCCe-eEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCC
Q 010258          454 EEVAQCYICLLEYEEGDS-VRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSL  510 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~-VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~  510 (514)
                      .....|||+..+|..... +.+.||||+|...||... + ....||+|-.++...+.+
T Consensus       111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k-~~~~Cp~c~~~f~~~DiI  166 (260)
T PF04641_consen  111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-K-KSKKCPVCGKPFTEEDII  166 (260)
T ss_pred             CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-c-ccccccccCCccccCCEE
Confidence            456789999999955444 556689999999999996 3 246799998888766554

>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.70  E-value=0.0033  Score=60.46  Aligned_cols=30  Identities=40%  Similarity=0.934  Sum_probs=27.7

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccH
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHK  483 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~  483 (514)
                      ++..||.||||+++.++.+..|||-.+||+
T Consensus       175 ddkGECvICLEdL~~GdtIARLPCLCIYHK  204 (205)
T KOG0801|consen  175 DDKGECVICLEDLEAGDTIARLPCLCIYHK  204 (205)
T ss_pred             ccCCcEEEEhhhccCCCceeccceEEEeec
Confidence            456789999999999999999999999997

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.65  E-value=0.0094  Score=61.16  Aligned_cols=50  Identities=18%  Similarity=0.321  Sum_probs=39.4

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHh-cCCCCCccccCcC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE-IHRVCPLCRGDIC  505 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke-~~~TCPLCRa~V~  505 (514)
                      ..+.+|++|-+.-..+  ....+|+|+||.-||..=+.. ...+||.|-.++.
T Consensus       237 t~~~~C~~Cg~~PtiP--~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  237 TSDTECPVCGEPPTIP--HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             cCCceeeccCCCCCCC--eeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            5577899999885554  677789999999999986552 2469999987765

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=95.55  E-value=0.005  Score=51.90  Aligned_cols=33  Identities=27%  Similarity=0.680  Sum_probs=28.2

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHH
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVD  487 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCId  487 (514)
                      ++...|+||-..+.. ....+.||||+||..|+.
T Consensus        76 ~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   76 TESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             CCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence            446679999999877 578899999999999975

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.49  E-value=0.0099  Score=61.83  Aligned_cols=54  Identities=24%  Similarity=0.535  Sum_probs=41.4

Q ss_pred             ccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCcc-ccCcCCCCCCCC
Q 010258          457 AQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLC-RGDICKPDSLPS  512 (514)
Q Consensus       457 ~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLC-Ra~V~e~~s~Pn  512 (514)
                      ..|+.|-.-+..+  +..-.|+|.||.+||..-|......||.| |.+|......|.
T Consensus       275 LkCplc~~Llrnp--~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD  329 (427)
T COG5222         275 LKCPLCHCLLRNP--MKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPD  329 (427)
T ss_pred             ccCcchhhhhhCc--ccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCcc
Confidence            6799998876654  44444999999999998888668899999 556666655553

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=95.48  E-value=0.01  Score=45.47  Aligned_cols=41  Identities=37%  Similarity=0.997  Sum_probs=28.1

Q ss_pred             ccccccccccCCeeEEeCCC--C---cccHHHHHHHHHh-cCCCCCcc
Q 010258          459 CYICLLEYEEGDSVRVLPCH--H---EFHKTCVDKWLKE-IHRVCPLC  500 (514)
Q Consensus       459 C~ICLEefe~gd~VrvLPCg--H---vFH~eCIdkWLke-~~~TCPLC  500 (514)
                      |-||++.....+ ..+.||.  =   ..|..|+.+|+.. .+..|++|
T Consensus         1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            779999877655 4567764  3   7899999999984 35679988

>PHA02862 5L protein; Provisional

Probab=95.04  E-value=0.015  Score=55.01  Aligned_cols=46  Identities=24%  Similarity=0.570  Sum_probs=35.2

Q ss_pred             ccccccccccccCCeeEEeCCC-----CcccHHHHHHHHHh-cCCCCCccccCcCC
Q 010258          457 AQCYICLLEYEEGDSVRVLPCH-----HEFHKTCVDKWLKE-IHRVCPLCRGDICK  506 (514)
Q Consensus       457 ~EC~ICLEefe~gd~VrvLPCg-----HvFH~eCIdkWLke-~~~TCPLCRa~V~e  506 (514)
                      ..|=||.++.++.    .-||.     ..-|.+|+.+|++. .+..||+|+.+..-
T Consensus         3 diCWIC~~~~~e~----~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I   54 (156)
T PHA02862          3 DICWICNDVCDER----NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI   54 (156)
T ss_pred             CEEEEecCcCCCC----cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence            4699999985443    35765     57899999999984 35689999987643

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=95.04  E-value=0.0097  Score=46.62  Aligned_cols=45  Identities=27%  Similarity=0.593  Sum_probs=22.8

Q ss_pred             ccccccccccCCeeEEeC--CCCcccHHHHHHHHHhcCCCCCccccCc
Q 010258          459 CYICLLEYEEGDSVRVLP--CHHEFHKTCVDKWLKEIHRVCPLCRGDI  504 (514)
Q Consensus       459 C~ICLEefe~gd~VrvLP--CgHvFH~eCIdkWLke~~~TCPLCRa~V  504 (514)
                      |++|.+++... ....+|  |++..+..|...-++.....||-||.+.
T Consensus         1 cp~C~e~~d~~-d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDET-DKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CC-CTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccC-CCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            78999998332 334555  8999999998887764478999999763

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.82  E-value=0.016  Score=61.47  Aligned_cols=48  Identities=23%  Similarity=0.515  Sum_probs=39.9

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDIC  505 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~  505 (514)
                      .++..|+||+..--   ..+..||+|.-|..||.+.|-. .+.|=.|+..+.
T Consensus       420 sEd~lCpICyA~pi---~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv~  467 (489)
T KOG4692|consen  420 SEDNLCPICYAGPI---NAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTVI  467 (489)
T ss_pred             cccccCcceecccc---hhhccCCCCchHHHHHHHHHhc-CCeeeEecceee
Confidence            45678999987532   3478899999999999999996 889999998775

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.62  E-value=0.042  Score=56.02  Aligned_cols=56  Identities=20%  Similarity=0.286  Sum_probs=46.9

Q ss_pred             ccccccccccccccCCeeEEeC-CCCcccHHHHHHHHHhcCCCCCccccCcCCCCCCC
Q 010258          455 EVAQCYICLLEYEEGDSVRVLP-CHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLP  511 (514)
Q Consensus       455 e~~EC~ICLEefe~gd~VrvLP-CgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~P  511 (514)
                      .-..|+||.+.+..--.+.+|. |||+|+.+|+.+.+.. ...||+|-.++.+.+.++
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~-D~v~pv~d~plkdrdiI~  276 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK-DMVDPVTDKPLKDRDIIG  276 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc-cccccCCCCcCcccceEe
Confidence            4578999999998877666554 9999999999999985 789999988887776543

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]

Probab=94.62  E-value=0.019  Score=66.08  Aligned_cols=48  Identities=29%  Similarity=0.764  Sum_probs=36.7

Q ss_pred             cccccccccccccccCCeeEEeC-CCCcccHHHHHHHHHhcCC------CCCccc
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLP-CHHEFHKTCVDKWLKEIHR------VCPLCR  501 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLP-CgHvFH~eCIdkWLke~~~------TCPLCR  501 (514)
                      ....+|.||++.+..-+.+-.-. |-|+||..||.+|......      .||.|.
T Consensus       189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cq  243 (950)
T KOG1952|consen  189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQ  243 (950)
T ss_pred             cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCccc
Confidence            34678999999987765443322 8899999999999985222      599998

>PHA03096 p28-like protein; Provisional

Probab=94.48  E-value=0.019  Score=58.92  Aligned_cols=46  Identities=28%  Similarity=0.526  Sum_probs=33.0

Q ss_pred             ccccccccccccCC----eeEEeC-CCCcccHHHHHHHHHhc--CCCCCcccc
Q 010258          457 AQCYICLLEYEEGD----SVRVLP-CHHEFHKTCVDKWLKEI--HRVCPLCRG  502 (514)
Q Consensus       457 ~EC~ICLEefe~gd----~VrvLP-CgHvFH~eCIdkWLke~--~~TCPLCRa  502 (514)
                      .+|.||++......    .-..|+ |.|.||..||..|-...  ..+||.|+.
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~  231 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR  231 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence            67999999876532    124566 99999999999999842  234555543

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.45  E-value=0.022  Score=60.09  Aligned_cols=44  Identities=30%  Similarity=0.590  Sum_probs=34.1

Q ss_pred             ccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcC
Q 010258          455 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDIC  505 (514)
Q Consensus       455 e~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~  505 (514)
                      ...-|.||+++.+.   ...+||||+-|  |+.--..  ..+||+||+.|.
T Consensus       304 ~p~lcVVcl~e~~~---~~fvpcGh~cc--ct~cs~~--l~~CPvCR~rI~  347 (355)
T KOG1571|consen  304 QPDLCVVCLDEPKS---AVFVPCGHVCC--CTLCSKH--LPQCPVCRQRIR  347 (355)
T ss_pred             CCCceEEecCCccc---eeeecCCcEEE--chHHHhh--CCCCchhHHHHH
Confidence            45679999998766   58999999977  7665443  567999998763

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=94.44  E-value=0.014  Score=57.83  Aligned_cols=45  Identities=27%  Similarity=0.538  Sum_probs=38.2

Q ss_pred             cccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCc
Q 010258          456 VAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDI  504 (514)
Q Consensus       456 ~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V  504 (514)
                      ...|.||-.+|+.+   ++..|||.||..|...-.+. ...|-+|-...
T Consensus       196 PF~C~iCKkdy~sp---vvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t  240 (259)
T COG5152         196 PFLCGICKKDYESP---VVTECGHSFCSLCAIRKYQK-GDECGVCGKAT  240 (259)
T ss_pred             ceeehhchhhccch---hhhhcchhHHHHHHHHHhcc-CCcceecchhh
Confidence            45799999999987   77889999999999988875 67899996643

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.16  E-value=0.027  Score=56.39  Aligned_cols=48  Identities=35%  Similarity=0.803  Sum_probs=40.3

Q ss_pred             ccccccccccccCCe---eEEeCCCCcccHHHHHHHHHhcCCCCCccccCc
Q 010258          457 AQCYICLLEYEEGDS---VRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDI  504 (514)
Q Consensus       457 ~EC~ICLEefe~gd~---VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V  504 (514)
                      .+|-||-++|...+.   .+.|.|||.|+..|+.+.+....-.||.||...
T Consensus         4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~   54 (296)
T KOG4185|consen    4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT   54 (296)
T ss_pred             CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence            469999999987643   567889999999999999986566799999974

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=94.06  E-value=0.042  Score=52.57  Aligned_cols=48  Identities=27%  Similarity=0.702  Sum_probs=35.4

Q ss_pred             cccccccccccccccCCeeEEeCCCC-----cccHHHHHHHHHh-cCCCCCccccCcC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHH-----EFHKTCVDKWLKE-IHRVCPLCRGDIC  505 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgH-----vFH~eCIdkWLke-~~~TCPLCRa~V~  505 (514)
                      ..+.+|-||.++..+    ..-||..     ..|.+|+..|+.. ....|++|..+..
T Consensus         6 ~~~~~CRIC~~~~~~----~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~   59 (162)
T PHA02825          6 LMDKCCWICKDEYDV----VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN   59 (162)
T ss_pred             CCCCeeEecCCCCCC----ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence            446689999988432    2357654     5699999999985 3557999998764

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.57  E-value=0.024  Score=58.72  Aligned_cols=46  Identities=24%  Similarity=0.499  Sum_probs=39.5

Q ss_pred             cccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcC
Q 010258          456 VAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDIC  505 (514)
Q Consensus       456 ~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~  505 (514)
                      ...|-||...|..+   ++..|+|.||..|...-++. ...|++|-+.+.
T Consensus       241 Pf~c~icr~~f~~p---Vvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t~  286 (313)
T KOG1813|consen  241 PFKCFICRKYFYRP---VVTKCGHYFCEVCALKPYQK-GEKCYVCSQQTH  286 (313)
T ss_pred             Cccccccccccccc---hhhcCCceeehhhhcccccc-CCcceecccccc
Confidence            45699999999997   78889999999999998885 678999977653

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=93.06  E-value=0.022  Score=64.50  Aligned_cols=49  Identities=31%  Similarity=0.622  Sum_probs=38.9

Q ss_pred             ccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCC-CCCccccCcCCCCC
Q 010258          457 AQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHR-VCPLCRGDICKPDS  509 (514)
Q Consensus       457 ~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~-TCPLCRa~V~e~~s  509 (514)
                      ..|.||++    .+.....+|+|.||.+|+..-+...+. .||+||..+...+.
T Consensus       455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l  504 (674)
T KOG1001|consen  455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKL  504 (674)
T ss_pred             cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHH
Confidence            68999999    345688889999999999998874333 59999987755443

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=92.87  E-value=0.092  Score=55.83  Aligned_cols=66  Identities=26%  Similarity=0.499  Sum_probs=44.7

Q ss_pred             hHHHhcCCceeeeccccccccccccccccccccccCCeeEEeCCCCcccHHHHHHHHH-hcCCCCCccccC
Q 010258          434 NEVVESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLK-EIHRVCPLCRGD  503 (514)
Q Consensus       434 ke~IdSLP~~~~~ks~k~~see~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLk-e~~~TCPLCRa~  503 (514)
                      +..+...|..+ +....+..++...|.||-+.+.-   +.++||+|..|-.|..+.-. -....||+||..
T Consensus        40 KNnlsaEPnlt-tsSaddtDEen~~C~ICA~~~TY---s~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE  106 (493)
T COG5236          40 KNNLSAEPNLT-TSSADDTDEENMNCQICAGSTTY---SARYPCGHQICHACAVRLRALYMQKGCPLCRTE  106 (493)
T ss_pred             ccccccCCccc-cccccccccccceeEEecCCceE---EEeccCCchHHHHHHHHHHHHHhccCCCccccc
Confidence            34444455533 33333444677889999887554   58999999999999875332 125789999974

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.67  E-value=0.085  Score=56.88  Aligned_cols=36  Identities=31%  Similarity=0.791  Sum_probs=32.1

Q ss_pred             cccccccccccccCCeeEEeCCCCcccHHHHHHHHH
Q 010258          456 VAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLK  491 (514)
Q Consensus       456 ~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLk  491 (514)
                      ...|.||+++..-.+.+..|||+|+||+.|+..++.
T Consensus       184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~  219 (445)
T KOG1814|consen  184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFT  219 (445)
T ss_pred             cccceeeehhhcCcceeeecccchHHHHHHHHHHHH
Confidence            467999999976667799999999999999999986

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.45  E-value=0.011  Score=63.15  Aligned_cols=50  Identities=30%  Similarity=0.670  Sum_probs=43.1

Q ss_pred             cccccccccccccC-CeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCC
Q 010258          456 VAQCYICLLEYEEG-DSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICK  506 (514)
Q Consensus       456 ~~EC~ICLEefe~g-d~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e  506 (514)
                      ...|+||.+.|... +.+..+-|||.+|..||.+||.. ...||.|+..+..
T Consensus       196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~-~~kl~~~~rel~~  246 (465)
T KOG0827|consen  196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLAT-KRKLPSCRRELPK  246 (465)
T ss_pred             HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHH-HHHhHHHHhhhhh
Confidence            45699999999876 56778889999999999999997 7789999987754

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.26  E-value=0.031  Score=58.05  Aligned_cols=43  Identities=28%  Similarity=0.631  Sum_probs=32.1

Q ss_pred             cccccccccccccCCeeEEeCCCCc-ccHHHHHHHHHhcCCCCCccccCcCC
Q 010258          456 VAQCYICLLEYEEGDSVRVLPCHHE-FHKTCVDKWLKEIHRVCPLCRGDICK  506 (514)
Q Consensus       456 ~~EC~ICLEefe~gd~VrvLPCgHv-FH~eCIdkWLke~~~TCPLCRa~V~e  506 (514)
                      ..-|+|||+...+   ...|+|||. -|.+|-..     -..||+||+.|..
T Consensus       300 ~~LC~ICmDaP~D---CvfLeCGHmVtCt~CGkr-----m~eCPICRqyi~r  343 (350)
T KOG4275|consen  300 RRLCAICMDAPRD---CVFLECGHMVTCTKCGKR-----MNECPICRQYIVR  343 (350)
T ss_pred             HHHHHHHhcCCcc---eEEeecCcEEeehhhccc-----cccCchHHHHHHH
Confidence            5679999986444   689999996 47777544     2389999987643

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=92.03  E-value=0.14  Score=49.00  Aligned_cols=33  Identities=27%  Similarity=0.579  Sum_probs=22.2

Q ss_pred             cccccccccccccCCeeEEeCCC-------------CcccHHHHHHHHH
Q 010258          456 VAQCYICLLEYEEGDSVRVLPCH-------------HEFHKTCVDKWLK  491 (514)
Q Consensus       456 ~~EC~ICLEefe~gd~VrvLPCg-------------HvFH~eCIdkWLk  491 (514)
                      +..|+|||+.-..   .+.|-|.             -.-|..|++++-+
T Consensus         2 d~~CpICme~PHN---AVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk   47 (162)
T PF07800_consen    2 DVTCPICMEHPHN---AVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK   47 (162)
T ss_pred             CccCceeccCCCc---eEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence            5679999997544   3555443             2247789998765

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.57  E-value=0.092  Score=60.67  Aligned_cols=42  Identities=24%  Similarity=0.668  Sum_probs=34.6

Q ss_pred             cccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccC
Q 010258          456 VAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGD  503 (514)
Q Consensus       456 ~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~  503 (514)
                      ...|.+|--.++.+  ++..-|||.||..|+.    .....||-|+.+
T Consensus       840 ~skCs~C~~~LdlP--~VhF~CgHsyHqhC~e----~~~~~CP~C~~e  881 (933)
T KOG2114|consen  840 VSKCSACEGTLDLP--FVHFLCGHSYHQHCLE----DKEDKCPKCLPE  881 (933)
T ss_pred             eeeecccCCccccc--eeeeecccHHHHHhhc----cCcccCCccchh
Confidence            35799999887775  6777799999999998    236789999873

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=91.56  E-value=0.088  Score=54.15  Aligned_cols=44  Identities=30%  Similarity=0.608  Sum_probs=38.0

Q ss_pred             cccccccccccCCe-eEEeCCCCcccHHHHHHHHHhcCCCCCcccc
Q 010258          458 QCYICLLEYEEGDS-VRVLPCHHEFHKTCVDKWLKEIHRVCPLCRG  502 (514)
Q Consensus       458 EC~ICLEefe~gd~-VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa  502 (514)
                      .|+||.+.+..... +..++|||.-|..|+...... +-+||+|.+
T Consensus       160 ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~-~y~CP~C~~  204 (276)
T KOG1940|consen  160 NCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICE-GYTCPICSK  204 (276)
T ss_pred             CCchhHHHhccccccCCccCcccchHHHHHHHHhcc-CCCCCcccc
Confidence            49999998876653 678999999999999999887 589999987

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=90.72  E-value=0.15  Score=54.19  Aligned_cols=53  Identities=19%  Similarity=0.481  Sum_probs=39.5

Q ss_pred             cccccccccccccCCe-eEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCC
Q 010258          456 VAQCYICLLEYEEGDS-VRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPD  508 (514)
Q Consensus       456 ~~EC~ICLEefe~gd~-VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~  508 (514)
                      ++-|+.|++++...|+ -.-.|||...|.-|....-+..+..||-||....+.+
T Consensus        14 ed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den   67 (480)
T COG5175          14 EDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN   67 (480)
T ss_pred             cccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence            3449999999887654 3445699888888876655556789999998765443

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.19  E-value=0.52  Score=50.67  Aligned_cols=66  Identities=20%  Similarity=0.345  Sum_probs=48.1

Q ss_pred             HhcCCceeeeccccccccccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcC--CCCCccccC
Q 010258          437 VESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIH--RVCPLCRGD  503 (514)
Q Consensus       437 IdSLP~~~~~ks~k~~see~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~--~TCPLCRa~  503 (514)
                      .+.||....-.... .-.....|||=.+.-.+..+...|.|||+..++-|.+..+.+.  ..||.|=.+
T Consensus       316 ~deLPveIeL~~~~-~fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e  383 (394)
T KOG2817|consen  316 KDELPVEIELGKEY-HFHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE  383 (394)
T ss_pred             cccCccceeccccc-cccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence            44555544332221 1245678999888888888899999999999999999988655  679999443

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=90.14  E-value=0.17  Score=40.90  Aligned_cols=47  Identities=26%  Similarity=0.482  Sum_probs=33.9

Q ss_pred             ccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCC
Q 010258          457 AQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDS  509 (514)
Q Consensus       457 ~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s  509 (514)
                      ..|..|...-..   -.++||+|+.+..|.+-|=   -.-||+|-.++...+.
T Consensus         8 ~~~~~~~~~~~~---~~~~pCgH~I~~~~f~~~r---YngCPfC~~~~~~~~~   54 (55)
T PF14447_consen    8 QPCVFCGFVGTK---GTVLPCGHLICDNCFPGER---YNGCPFCGTPFEFDDP   54 (55)
T ss_pred             eeEEEccccccc---cccccccceeeccccChhh---ccCCCCCCCcccCCCC
Confidence            346666655333   4899999999999976642   4589999888865543

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=89.63  E-value=0.15  Score=53.54  Aligned_cols=44  Identities=27%  Similarity=0.688  Sum_probs=30.8

Q ss_pred             ccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcC
Q 010258          457 AQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDIC  505 (514)
Q Consensus       457 ~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~  505 (514)
                      --|--|--.+..  .-+.+||+|+||.+|...  . ..+.||+|-..|.
T Consensus        91 HfCd~Cd~PI~I--YGRmIPCkHvFCl~CAr~--~-~dK~Cp~C~d~Vq  134 (389)
T KOG2932|consen   91 HFCDRCDFPIAI--YGRMIPCKHVFCLECARS--D-SDKICPLCDDRVQ  134 (389)
T ss_pred             EeecccCCccee--eecccccchhhhhhhhhc--C-ccccCcCcccHHH
Confidence            346666555433  357899999999999754  2 2568999976653

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=89.20  E-value=0.22  Score=51.71  Aligned_cols=44  Identities=25%  Similarity=0.624  Sum_probs=35.4

Q ss_pred             cccccccccccccccCCeeEEeCC--CCcccHHHHHHHHHhcCCCCCccccCcC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPC--HHEFHKTCVDKWLKEIHRVCPLCRGDIC  505 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPC--gHvFH~eCIdkWLke~~~TCPLCRa~V~  505 (514)
                      .+..+|+||.+.+..+    ++.|  ||.-|..|-.+    ....||.||.++.
T Consensus        46 ~~lleCPvC~~~l~~P----i~QC~nGHlaCssC~~~----~~~~CP~Cr~~~g   91 (299)
T KOG3002|consen   46 LDLLDCPVCFNPLSPP----IFQCDNGHLACSSCRTK----VSNKCPTCRLPIG   91 (299)
T ss_pred             hhhccCchhhccCccc----ceecCCCcEehhhhhhh----hcccCCccccccc
Confidence            4567899999999986    6667  79999888653    3568999999876

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=87.47  E-value=0.22  Score=37.70  Aligned_cols=42  Identities=24%  Similarity=0.652  Sum_probs=23.3

Q ss_pred             ccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCC-CCCcc
Q 010258          459 CYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHR-VCPLC  500 (514)
Q Consensus       459 C~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~-TCPLC  500 (514)
                      |.+|.+-...|..-....|+=.+|..|+..+++.... .||.|
T Consensus         1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            6788887777632222348889999999999985332 69988

; PDB: 3NW0_A 2CT0_A.

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=87.19  E-value=0.44  Score=46.97  Aligned_cols=34  Identities=32%  Similarity=0.892  Sum_probs=26.8

Q ss_pred             EeCCCCcccHHHHHHHHHhc----------CCCCCccccCcCCC
Q 010258          474 VLPCHHEFHKTCVDKWLKEI----------HRVCPLCRGDICKP  507 (514)
Q Consensus       474 vLPCgHvFH~eCIdkWLke~----------~~TCPLCRa~V~e~  507 (514)
                      -..|+.-||.-|+..||..+          -..||.|-.+|.-+
T Consensus       187 N~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK  230 (234)
T KOG3268|consen  187 NIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK  230 (234)
T ss_pred             ccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence            45599999999999999841          23699999887544

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.96  E-value=0.3  Score=56.82  Aligned_cols=36  Identities=28%  Similarity=0.552  Sum_probs=28.9

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHH
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWL  490 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWL  490 (514)
                      +..+.|.||...+... +-.+.||||.||..||.+-.
T Consensus       815 ep~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v  850 (911)
T KOG2034|consen  815 EPQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHV  850 (911)
T ss_pred             cCccchHHhcchhhcC-cceeeeccchHHHHHHHHHH
Confidence            3467899999887653 56788999999999998644

>KOG3053 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.77  E-value=0.29  Score=50.23  Aligned_cols=51  Identities=31%  Similarity=0.824  Sum_probs=36.9

Q ss_pred             cccccccccccccccCCee-EEeCCC-----CcccHHHHHHHHHhcCC-------CCCccccCc
Q 010258          454 EEVAQCYICLLEYEEGDSV-RVLPCH-----HEFHKTCVDKWLKEIHR-------VCPLCRGDI  504 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~V-rvLPCg-----HvFH~eCIdkWLke~~~-------TCPLCRa~V  504 (514)
                      +.+..|-||+..-++.... -+-||.     |..|..||..|+.+.+.       .||.|+.+.
T Consensus        18 e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY   81 (293)
T KOG3053|consen   18 ELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY   81 (293)
T ss_pred             ccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence            4566799999986654322 345653     88999999999986222       699998865

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=86.62  E-value=0.45  Score=50.64  Aligned_cols=32  Identities=31%  Similarity=0.848  Sum_probs=24.9

Q ss_pred             CCCcccHHHHHHHHHh------------cCCCCCccccCcCCCC
Q 010258          477 CHHEFHKTCVDKWLKE------------IHRVCPLCRGDICKPD  508 (514)
Q Consensus       477 CgHvFH~eCIdkWLke------------~~~TCPLCRa~V~e~~  508 (514)
                      |.-.+|.+|+-+|+..            .+..||+||+.++--+
T Consensus       311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD  354 (358)
T PF10272_consen  311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD  354 (358)
T ss_pred             ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence            6667889999999863            2447999999987544

They are purported to be transmembrane protein-precursors but their function is unknown.

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=86.61  E-value=0.25  Score=56.03  Aligned_cols=45  Identities=27%  Similarity=0.514  Sum_probs=33.9

Q ss_pred             ccccccccccccccCC-eeEEeCCCCcccHHHHHHHHHhcCCCCCccccC
Q 010258          455 EVAQCYICLLEYEEGD-SVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGD  503 (514)
Q Consensus       455 e~~EC~ICLEefe~gd-~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~  503 (514)
                      +...|.||+..|.... ..+.|-|||..|..|+.....   .+|| |+.+
T Consensus        10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn---~scp-~~~D   55 (861)
T KOG3161|consen   10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN---ASCP-TKRD   55 (861)
T ss_pred             HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh---ccCC-CCcc
Confidence            3467999998887543 235666999999999998664   5899 7654

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=86.39  E-value=0.66  Score=37.39  Aligned_cols=43  Identities=30%  Similarity=0.828  Sum_probs=33.7

Q ss_pred             cccccccccccccCCeeEEeC-CCCcccHHHHHHHHHhcCCCCCc--cccC
Q 010258          456 VAQCYICLLEYEEGDSVRVLP-CHHEFHKTCVDKWLKEIHRVCPL--CRGD  503 (514)
Q Consensus       456 ~~EC~ICLEefe~gd~VrvLP-CgHvFH~eCIdkWLke~~~TCPL--CRa~  503 (514)
                      ...|++|-+.|.+++.+++-| |+-.||+.|   |.+  ...|-+  |..+
T Consensus         5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C---~~~--~g~C~~~~c~~~   50 (54)
T PF14446_consen    5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDC---WEK--AGGCINYSCGTG   50 (54)
T ss_pred             CccChhhCCcccCCCCEEECCCCCCcccHHH---Hhh--CCceEeccCCCC
Confidence            456999999999888888888 999999999   554  456655  5443

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=85.87  E-value=0.41  Score=55.40  Aligned_cols=50  Identities=16%  Similarity=0.245  Sum_probs=37.7

Q ss_pred             ccccccccccccccCC-eeEEeC---CCCcccHHHHHHHHHh-----cCCCCCccccCc
Q 010258          455 EVAQCYICLLEYEEGD-SVRVLP---CHHEFHKTCVDKWLKE-----IHRVCPLCRGDI  504 (514)
Q Consensus       455 e~~EC~ICLEefe~gd-~VrvLP---CgHvFH~eCIdkWLke-----~~~TCPLCRa~V  504 (514)
                      +...|.||..++..++ ..-.+|   |+|.||..||..|+.+     ++..|++|.+-|
T Consensus        95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci  153 (1134)
T KOG0825|consen   95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV  153 (1134)
T ss_pred             cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence            3567888888887743 345666   9999999999999984     355789987643

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=84.10  E-value=1.5  Score=41.37  Aligned_cols=51  Identities=25%  Similarity=0.569  Sum_probs=37.6

Q ss_pred             ccccccccccccccCCeeEEeC----CCCcccHHHHHHHHHh--cCCCCCccccCcCCCC
Q 010258          455 EVAQCYICLLEYEEGDSVRVLP----CHHEFHKTCVDKWLKE--IHRVCPLCRGDICKPD  508 (514)
Q Consensus       455 e~~EC~ICLEefe~gd~VrvLP----CgHvFH~eCIdkWLke--~~~TCPLCRa~V~e~~  508 (514)
                      ...+|.||.|.-.+.   +-|.    ||-..|..|-...++.  .+..||+|+..+....
T Consensus        79 ~lYeCnIC~etS~ee---~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~  135 (140)
T PF05290_consen   79 KLYECNICKETSAEE---RFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS  135 (140)
T ss_pred             CceeccCcccccchh---hcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence            467899999986654   2222    9999999988776662  4678999998775443

>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=83.95  E-value=0.57  Score=46.41  Aligned_cols=50  Identities=28%  Similarity=0.692  Sum_probs=37.0

Q ss_pred             cccccccccccccCCe-eEEeCCC-----CcccHHHHHHHHHh-cCCCCCccccCcC
Q 010258          456 VAQCYICLLEYEEGDS-VRVLPCH-----HEFHKTCVDKWLKE-IHRVCPLCRGDIC  505 (514)
Q Consensus       456 ~~EC~ICLEefe~gd~-VrvLPCg-----HvFH~eCIdkWLke-~~~TCPLCRa~V~  505 (514)
                      ...|-||.++...... ....||.     +..|..|+..|+.. ....|.+|.....
T Consensus        78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~  134 (323)
T KOG1609|consen   78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI  134 (323)
T ss_pred             CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence            4679999998664322 4567764     66899999999983 3568999987553

>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=83.68  E-value=0.58  Score=54.38  Aligned_cols=56  Identities=25%  Similarity=0.574  Sum_probs=41.2

Q ss_pred             cccccccccccccccCCeeEEeCCC-----CcccHHHHHHHHHh-cCCCCCccccCcCCCCCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCH-----HEFHKTCVDKWLKE-IHRVCPLCRGDICKPDSL  510 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCg-----HvFH~eCIdkWLke-~~~TCPLCRa~V~e~~s~  510 (514)
                      ++...|-||..+-..++++- -||+     ...|.+|+..|+.- ....|-+|+.++.-++.+
T Consensus        10 ~d~~~CRICr~e~~~d~pLf-hPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY   71 (1175)
T COG5183          10 EDKRSCRICRTEDIRDDPLF-HPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIY   71 (1175)
T ss_pred             ccchhceeecCCCCCCCcCc-ccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeec
Confidence            55688999999876665543 3455     45899999999983 345799999887655543

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=82.60  E-value=0.48  Score=57.13  Aligned_cols=44  Identities=30%  Similarity=0.630  Sum_probs=36.6

Q ss_pred             cccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCcccc
Q 010258          456 VAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRG  502 (514)
Q Consensus       456 ~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa  502 (514)
                      ...|.||++.+...  -.+..|||.||..|+..|+.. +..||+|+.
T Consensus      1153 ~~~c~ic~dil~~~--~~I~~cgh~~c~~c~~~~l~~-~s~~~~~ks 1196 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQ--GGIAGCGHEPCCRCDELWLYA-SSRCPICKS 1196 (1394)
T ss_pred             ccchHHHHHHHHhc--CCeeeechhHhhhHHHHHHHH-hccCcchhh
Confidence            34799999998732  245669999999999999995 889999984

>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=81.67  E-value=1.1  Score=47.74  Aligned_cols=37  Identities=38%  Similarity=0.776  Sum_probs=28.1

Q ss_pred             ccccccccccccccC-CeeEEeCCCCcccHHHHHHHHH
Q 010258          455 EVAQCYICLLEYEEG-DSVRVLPCHHEFHKTCVDKWLK  491 (514)
Q Consensus       455 e~~EC~ICLEefe~g-d~VrvLPCgHvFH~eCIdkWLk  491 (514)
                      ...+|.||+.++... +...++.|+|.||.+|+.+.+.
T Consensus       145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~ie  182 (384)
T KOG1812|consen  145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIE  182 (384)
T ss_pred             ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhh
Confidence            356899999554443 4444677999999999998887

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]

Probab=80.11  E-value=0.44  Score=54.35  Aligned_cols=48  Identities=38%  Similarity=0.790  Sum_probs=38.3

Q ss_pred             cccccccccccccCCeeEEeCCCCcccHHHHHHHHHh--cCCCCCccccCcCC
Q 010258          456 VAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE--IHRVCPLCRGDICK  506 (514)
Q Consensus       456 ~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke--~~~TCPLCRa~V~e  506 (514)
                      ..+|+||+..|..+   ..+.|-|.|+..|+..-|..  ....||+|+..+..
T Consensus        21 ~lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK   70 (684)
T KOG4362|consen   21 ILECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK   70 (684)
T ss_pred             hccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence            45799999999987   77889999999998876553  24579999976643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	514
1x4j_A	75	Solution Structure Of Ring Finger In Ring Finger Pr		2e-10
2l0b_A	91	Solution Nmr Structure Of Zinc Finger Domain Of E3		3e-09
2kiz_A	69	Solution Structure Of Arkadia Ring-H2 Finger Domain		5e-09
1iym_A	55	Ring-H2 Finger Domain Of El5 Length = 55		2e-07
2ect_A	78	Solution Structure Of The Zinc Finger, C3hc4 Type (		1e-06
2ep4_A	74	Solution Structure Of Ring Finger From Human Ring F		2e-06
2ecn_A	70	Solution Structure Of The Ring Domain Of The Human		4e-04

>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein 38 Length = 75

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 451 YQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGD 503
           +Q+E+   C +C+ ++E    +RVLPC+HEFH  CVDKWLK  +R CP+CR D
Sbjct: 19  HQSEQTL-CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRAD 69

>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3 Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr4710b Length = 91

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 432 APNEVVESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLK 491
           A  E +++LP  L T+      +E+  C IC  EY +GD    LPCHH FHK CV  WL+
Sbjct: 17  ASKESIDALPEILVTEDHGAVGQEMC-CPICCSEYVKGDVATELPCHHYFHKPCVSIWLQ 75
Query: 492 EIHRVCPLCR 501
           +    CP+CR
Sbjct: 76  K-SGTCPVCR 84

>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain Length = 69

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/57 (52%), Positives = 38/57 (66%), Gaps = 3/57 (5%)
Query: 458 QCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPSEN 514
           +C ICL   EEG+ VR LPC H FH+ CVD+WL   ++ CP+CR DI     LPSE+
Sbjct: 16  KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLI-TNKKCPICRVDI--EAQLPSES 69

>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5 Length = 55

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/45 (53%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 458 QCYICLLEYEEGDSVRVLP-CHHEFHKTCVDKWLKEIHRVCPLCR 501
           +C +CL E E+G+  R LP C H FH  CVD WL   H  CPLCR
Sbjct: 7   ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCR 50

>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Of Ring Finger Protein 126 Length = 78

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 458 QCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCR 501
           +C +C  +Y  G+SVR LPC+H FH +C+  WL++ H  CP+CR
Sbjct: 17  ECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCR 59

>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger Protein 24 Length = 74

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 459 CYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLC 500
           C +CL +++  D + + PC H FH+ C+ KWL E+ +VCPLC
Sbjct: 18  CAVCLEDFKPRDELGICPCKHAFHRKCLIKWL-EVRKVCPLC 58

>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring Finger Protein 141 Length = 70

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 5/44 (11%)
Query: 458 QCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCR 501
           +C IC+    +G +  +LPC H F + C+DKW  + HR CP+CR
Sbjct: 17  ECCICM----DGRADLILPCAHSFCQKCIDKW-SDRHRNCPICR 55

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	514
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	7e-29
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	7e-29
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	4e-25
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	1e-24
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	4e-20
2ect_A	78	Ring finger protein 126; metal binding protein, st	2e-19
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	6e-17
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	4e-15
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	2e-14
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	3e-14
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	6e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	1e-10
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	6e-10
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	9e-10
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	2e-09
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	1e-08
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	3e-08
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	4e-08
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	6e-08
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	3e-07
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	3e-07
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	6e-07
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	1e-06
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	2e-06
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	2e-06
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	4e-06
3nw0_A	238	Non-structural maintenance of chromosomes element	4e-06
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	4e-06
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	8e-06
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	1e-05
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	2e-05
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	2e-05
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	3e-05
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	3e-05
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	1e-04
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	3e-05
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	6e-05
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	6e-05
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	8e-05
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	9e-05
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	1e-04
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	1e-04
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	2e-04
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	3e-04
1z6u_A	150	NP95-like ring finger protein isoform B; structura	3e-04
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	4e-04
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	4e-04

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score =  108 bits (272), Expect = 7e-29
 Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query: 424 MSSIGSIPAPNEVVESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHK 483
              + + PA  E +++LP  L T+      +E   C IC  EY +GD    LPCHH FHK
Sbjct: 9   SHMVANPPASKESIDALPEILVTEDHGAVGQE-MCCPICCSEYVKGDVATELPCHHYFHK 67

Query: 484 TCVDKWLKEIHRVCPLCRGDICKP 507
            CV  WL++    CP+CR     P
Sbjct: 68  PCVSIWLQK-SGTCPVCRCMFPPP 90

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score =  107 bits (270), Expect = 7e-29
 Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 3/75 (4%)

Query: 432 APNEVVESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLK 491
             +     LP   +  +      E   C +C+ ++E    +RVLPC+HEFH  CVDKWLK
Sbjct: 1   GSSGSSGQLPSYRFNPNNH--QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLK 58

Query: 492 EIHRVCPLCRGDICK 506
             +R CP+CR D   
Sbjct: 59  -ANRTCPICRADSGP 72

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 97.1 bits (242), Expect = 4e-25
 Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 445 YTKSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDI 504
               +  + +   +C ICL   EEG+ VR LPC H FH+ CVD+WL   ++ CP+CR DI
Sbjct: 3   QDGEEGTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLI-TNKKCPICRVDI 61

Query: 505 CKPDSLPS 512
                  S
Sbjct: 62  EAQLPSES 69

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 96.0 bits (239), Expect = 1e-24
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 452 QNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLP 511
           +      C +CL +++  D + + PC H FH+ C+ KWL+ + +VCPLC   + +   L 
Sbjct: 11  ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLE-VRKVCPLCNMPVLQLAQLS 69

Query: 512 S 512
            
Sbjct: 70  G 70

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55

 Score = 83.0 bits (206), Expect = 4e-20
 Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 454 EEVAQCYICLLEYEEGDSVRVLP-CHHEFHKTCVDKWLKEIHRVCPLCRGDI 504
           ++  +C +CL E E+G+  R LP C H FH  CVD WL   H  CPLCR  +
Sbjct: 3   DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG-SHSTCPLCRLTV 53

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 81.7 bits (202), Expect = 2e-19
 Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 457 AQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDS 509
            +C +C  +Y  G+SVR LPC+H FH +C+  WL++ H  CP+CR  +   ++
Sbjct: 16  LECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNT 67

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 74.4 bits (183), Expect = 6e-17
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 5/58 (8%)

Query: 452 QNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDS 509
           Q  +  +C IC+    +G +  +LPC H F + C+DKW    HR CP+CR  +   + 
Sbjct: 11  QLTDEEECCICM----DGRADLILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTGANE 63

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 68.4 bits (168), Expect = 4e-15
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 453 NEEVAQCYICLLEYEEGD-SVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDI 504
           +   + C ICL +         VLPC H  H+TC ++ LKE    CPLC G  
Sbjct: 2   SSGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCSGPS 53

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 66.7 bits (163), Expect = 2e-14
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 458 QCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDI 504
           +C ICL +    +    LPC H F   C+ +W+++ +  CPLC+  +
Sbjct: 7   RCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPV 50

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 66.8 bits (163), Expect = 3e-14
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 452 QNEEVAQCYICLLEYEEGDSVRVLP-CHHEFHKTCVDKWLKEIHRVCPLCRGDI 504
           + + +  C  C  E ++ D V V   C+H FH  C+  W+K+ +  CPLC+ D 
Sbjct: 22  RVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDW 74

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 72.5 bits (177), Expect = 6e-14
 Identities = 25/155 (16%), Positives = 58/155 (37%), Gaps = 13/155 (8%)

Query: 367 QHRTGRCTCRVSNRD--ANSGDETGTRASISRIVMLAEALFEVLDEIHQQSVVL-----S 419
            H+ G    R+S       +        +I + +   + LF+ L +  ++   L     +
Sbjct: 239 IHKPGSYIFRLSCTRLGQWAIGYVTADGNILQTIPHNKPLFQALIDGFREGFYLFPDGRN 298

Query: 420 SRPSMSSIGSIPAPNEVVESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHH 479
             P ++ +      + +      K+  +  +   E  +   +C +  E    V++ PC H
Sbjct: 299 QNPDLTGLCEPTPQDHI------KVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGH 352

Query: 480 EFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPSEN 514
               +C+  W +   + CP CR +I   + +  + 
Sbjct: 353 LMCTSCLTSWQESEGQGCPFCRCEIKGTEPIVVDP 387

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.3 bits (158), Expect = 3e-11
 Identities = 73/550 (13%), Positives = 143/550 (26%), Gaps = 185/550 (33%)

Query: 29  NWL---FQSSCLGSDTGTASGSRHTRSQRDEENGGNQSETESDELKIECDRKEKDEIDCI 85
            +L    ++         +  +R    QRD     NQ        K    R +      +
Sbjct: 92  KFLMSPIKTEQRQ----PSMMTRMYIEQRDRLYNDNQVFA-----KYNVSRLQP--YLKL 140

Query: 86  SNS-DELDGWGEANITSVNGNGGTGSSS-ARSSSNPCRFLSRFSFIPGNI---SFR---- 136
             +  EL      N+  ++G  G+G +  A       +   +       I   + +    
Sbjct: 141 RQALLELRP--AKNVL-IDGVLGSGKTWVALDVCLSYKVQCKM---DFKIFWLNLKNCNS 194

Query: 137 ----LSRAASLGSSRGYNTDEHGRSSSNFPHNLEEIQNAAR---------------DDGD 177
               L     L      N       SSN    +  IQ   R                +  
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN-- 252

Query: 178 GVGNNRVGIGGNVCSPRVFNELDNVGSRV---SDRRIGAREPVERNVRFSRTLSVGRLRD 234
                       V + + +N  + +  ++   +           R  + +  LS      
Sbjct: 253 ------------VQNAKAWNAFN-LSCKILLTT-----------RFKQVTDFLSAATTTH 288

Query: 235 RVLRRSSLSDITFCPLQQERLVRDANQRSARNAFGGDTEILSSTPEGNGNGVTSPLTSGY 294
             L   S+   T  P + + L+                + L    E      T+P     
Sbjct: 289 ISLDHHSM---TLTPDEVKSLL--------LKYLDCRPQDLP--REVLT---TNPRR--- 329

Query: 295 PPSSRSSSLFG--IQDHEVETSRSREARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRF 352
                  S+    I+D        +      L     + L           A  R    F
Sbjct: 330 ------LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN------VLEPAEYR--KMF 375

Query: 353 ENLSGHERSCILSGQHRTGRCTCRVSNRDANSGDETGTRASISRIV-------MLAEALF 405
           + LS      +                  A+          I  I+       ++   + 
Sbjct: 376 DRLS------VF--------------PPSAH----------IPTILLSLIWFDVIKSDVM 405

Query: 406 EVLDEIHQQSVVLSSRPSMS-SIGSI------PAPNE------VVESLPVKLYTKSQKYQ 452
            V++++H+ S+V       + SI SI         NE      +V+      Y   + + 
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH-----YNIPKTFD 460

Query: 453 NEEVAQC----YIC------LLEYEEGDSVRVLPCHHEFHKTCVD-KWLKE-IHRVCPLC 500
           ++++       Y        L   E  + +        F    +D ++L++ I       
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMT------LFRMVFLDFRFLEQKIRHDSTAW 514

Query: 501 RGDICKPDSL 510
                  ++L
Sbjct: 515 NASGSILNTL 524

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 3e-04
 Identities = 50/341 (14%), Positives = 91/341 (26%), Gaps = 98/341 (28%)

Query: 223 FSRTLSVGRLRD---RVLRRSSLSDITFCPLQQERLVR-----DANQRSARNAFGGDTEI 274
           F        ++D    +L +  +  I          +R      + Q      F  +   
Sbjct: 29  FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL- 87

Query: 275 LSSTPEGNGNGVTSPLTSGYPPSSRSSSLFGIQDHEVETSRSREARYHDLLEHRSNFLER 334
                  N   + SP+ +     S  + ++          R R   Y+D        + R
Sbjct: 88  -----RINYKFLMSPIKTEQRQPSMMTRMY-------IEQRDR--LYNDNQVFAKYNVSR 133

Query: 335 RRRIRSQVRALQRLGSRFENL-------SGHERSCILSGQHRTGRCTCRVSNRDANSGDE 387
            +      +AL  L    +N+       SG  ++  ++         C           +
Sbjct: 134 LQPYLKLRQALLEL-RPAKNVLIDGVLGSG--KTW-VALD------VCLSYKVQCKMDFK 183

Query: 388 -----TGTRASISRIVMLAEALFEVLDEIHQQSVVLSSRPSMSSIGSIPAPNEVVESLPV 442
                     S   ++ + + L       +Q     +SR   SS  +I      +++   
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLL------YQIDPNWTSRSDHSS--NIKLRIHSIQAELR 235

Query: 443 KLYTKSQKY----------QNEEVA-----QCYICLLEYEEGDSVRVLPCHHEFHKTCVD 487
           +L  KS+ Y          QN +        C I LL          L      H +   
Sbjct: 236 RLL-KSKPYENCLLVLLNVQNAKAWNAFNLSCKI-LLTTRFKQVTDFLSAATTTHISLDH 293

Query: 488 ---------------KWLKEIHRVCPLCRGDICKPDSLPSE 513
                          K+L              C+P  LP E
Sbjct: 294 HSMTLTPDEVKSLLLKYLD-------------CRPQDLPRE 321

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 56.5 bits (136), Expect = 1e-10
 Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 5/51 (9%)

Query: 458 QCYICLLEYEE----GDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDI 504
            C IC+  Y E    G  +    C H F   C+   LK     CP CR  I
Sbjct: 17  SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKI 66

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 54.5 bits (131), Expect = 6e-10
 Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 5/64 (7%)

Query: 452 QNEEVAQCYICLLEYEE----GDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKP 507
           +      C IC+  Y E    G  +    C H F   C+   LK     CP CR  I   
Sbjct: 6   RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHK 64

Query: 508 DSLP 511
              P
Sbjct: 65  RYHP 68

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 53.6 bits (129), Expect = 9e-10
 Identities = 18/61 (29%), Positives = 22/61 (36%), Gaps = 5/61 (8%)

Query: 455 EVAQCYICLLEYEE----GDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSL 510
            +  C IC+  Y E    G  +    C H F   C+   LK     CP CR  I      
Sbjct: 2   AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYH 60

Query: 511 P 511
           P
Sbjct: 61  P 61

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 53.7 bits (129), Expect = 2e-09
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPD 508
            EV +C+IC+ +    D+     C      +C+ +WL E    CP CR  +   +
Sbjct: 20  AEVFRCFICMEKLR--DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE 72

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381

 Score = 56.0 bits (134), Expect = 1e-08
 Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 15/80 (18%)

Query: 440 LPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRV-----LPCHHEFHKTCVDKWLKE-- 492
           +P          ++ E  +C IC     +G  V +       C  + H  C+++W K   
Sbjct: 292 MPDWSDGPKLDEEDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLM 351

Query: 493 --------IHRVCPLCRGDI 504
                       CP C+  +
Sbjct: 352 DGKTFLEVSFGQCPFCKAKL 371

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 50.1 bits (120), Expect = 3e-08
 Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 5/69 (7%)

Query: 448 SQKYQNEEVAQCYICLLEYEEGDSV-RVLPCHHEFHKTCVDKWLKEIHR--VCPLCRGDI 504
                  EV +C IC+  + E     ++L C H   + C++K L        CP C    
Sbjct: 7   GNLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKIT 66

Query: 505 CKP--DSLP 511
                  L 
Sbjct: 67  RITSLTQLT 75

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 49.4 bits (118), Expect = 4e-08
 Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 3/59 (5%)

Query: 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS 512
                C IC       D+  +  C H F K+C+ +        CP C   + +   L  
Sbjct: 13  TPYILCSICKGYLI--DATTITECLHTFCKSCIVRHF-YYSNRCPKCNIVVHQTQPLSG 68

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 49.2 bits (117), Expect = 6e-08
 Identities = 15/62 (24%), Positives = 20/62 (32%), Gaps = 5/62 (8%)

Query: 453 NEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIH-RVCPLCRGDICKPDSLP 511
            + V  C IC     +G       C    H  CV K+ +      CP C      P  +P
Sbjct: 12  PDAVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW--PHEIP 67

Query: 512 SE 513
             
Sbjct: 68  KS 69

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 48.3 bits (114), Expect = 3e-07
 Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 26/101 (25%)

Query: 426 SIGSIPAPNEVVESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDS-------------- 471
           S GS   P +V+     K   + +    E+   C IC+ +                    
Sbjct: 2   SSGSSGEPEQVIR----KYTEELKVAPEED---CIICMEKLAVASGYSDMTDSKALGPMV 54

Query: 472 -VRVLPCHHEFHKTCVDKWL----KEIHRVCPLCRGDICKP 507
             R+  C H FH  C+        K+    CP C+    + 
Sbjct: 55  VGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 47.9 bits (114), Expect = 3e-07
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS 512
                C +C   +   D+  ++ C H F KTC+ ++L+   + CP+C   + K   L +
Sbjct: 13  NPHLMCVLCGGYFI--DATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLN 68

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 46.0 bits (109), Expect = 6e-07
 Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 4/59 (6%)

Query: 446 TKSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDI 504
           +      +  V +C ICL        V  LPC H F   CV        R C LCR +I
Sbjct: 5   SSGNTAPSLTVPECAICLQTCV--HPVS-LPCKHVFCYLCVKGASWLGKR-CALCRQEI 59

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 45.6 bits (108), Expect = 1e-06
 Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 4/44 (9%)

Query: 458 QCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCR 501
           +C+IC   ++      V  C H F ++C  +  +     C +C 
Sbjct: 17  RCFICRQAFQNP---VVTKCRHYFCESCALEHFRA-TPRCYICD 56

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 44.8 bits (106), Expect = 2e-06
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPD 508
           E+  +C  C L        +   C H F ++C+   L      C  C+  I K  
Sbjct: 13  EDKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Length = 106

 Score = 45.6 bits (107), Expect = 2e-06
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 450 KYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCR 501
              +  +           E  +V    C+H FH  C+ +WLK   +VCPL  
Sbjct: 46  HIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDN 96

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Length = 117

 Score = 45.2 bits (106), Expect = 4e-06
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 465 EYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCR 501
              E  +V    C+H FH  C+ +WLK   +VCPL  
Sbjct: 72  ATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDN 107

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238

 Score = 47.4 bits (112), Expect = 4e-06
 Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 5/72 (6%)

Query: 442 VKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLK-EIHRVCPLC 500
           +++    ++   + V  C IC     +G       C    H  CV K+ +      CP C
Sbjct: 166 LEMEQYIRETYPDAVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHC 223

Query: 501 RGDICKPDSLPS 512
                 P  +P 
Sbjct: 224 NDYW--PHEIPK 233

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 43.9 bits (103), Expect = 4e-06
 Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 451 YQNEEVAQCYICLLEYEEGD-SVRVLPCHHEFHKTCVDKWLKEIHRVCPLCR 501
              E+  +C +C+   E  D +     C ++  + C  +   + + +CP CR
Sbjct: 6   DAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACR 57

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 43.6 bits (103), Expect = 8e-06
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPD 508
           +++ +C IC   +    ++ +  C H +   C+ K+L      CP C   + +PD
Sbjct: 20  DDLLRCGICFEYFN--IAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPD 71

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 43.4 bits (102), Expect = 1e-05
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 459 CYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSL 510
           C IC       D V    C H F + C+ + LK +   CP CR   C P  L
Sbjct: 26  CQICEHILA--DPVE-TSCKHLFCRICILRCLKVMGSYCPSCRY-PCFPTDL 73

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus} Length = 101

 Score = 42.9 bits (100), Expect = 2e-05
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 459 CYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPSEN 514
           C  C L  +     R++PC H F   C     K+  ++CP C   + + +     +
Sbjct: 4   CDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQCTRGS 57

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 3/58 (5%)

Query: 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLP 511
           EE  QC  C              C H   K C+D+  +     CP CR D+ +  ++ 
Sbjct: 50  EETFQCICCQELVFR---PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQ 104

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 Length = 60

 Score = 40.9 bits (96), Expect = 3e-05
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 9/56 (16%)

Query: 452 QNEEVAQCYICLLEYEEGDSVRVLPCH-----HEFHKTCVDKWLKE-IHRVCPLCR 501
           ++E+V  C+IC    EE  + R   C         H++C+  WL    +  C +C 
Sbjct: 2   EDEDVPVCWICN---EELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICG 54

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 42.8 bits (100), Expect = 3e-05
 Identities = 16/59 (27%), Positives = 19/59 (32%), Gaps = 5/59 (8%)

Query: 454 EEVAQCYICLLEYEEGDSVR----VLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPD 508
                C IC+  Y E            C H F   C+   LK  +  CP CR  I    
Sbjct: 5   SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT-CPTCRKKINHKR 62

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 18/74 (24%), Positives = 23/74 (31%), Gaps = 5/74 (6%)

Query: 437 VESLPVKLYTKSQKYQNEEVAQCYICLLEYEE----GDSVRVLPCHHEFHKTCVDKWLKE 492
                +        Y       C IC+  Y E    G  +    C H F   C+   LK 
Sbjct: 53  TCRKKINHKRYHPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN 112

Query: 493 IHRVCPLCRGDICK 506
            +  CP CR  I  
Sbjct: 113 AN-TCPTCRKKINH 125

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 42.1 bits (99), Expect = 3e-05
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 459 CYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPSEN 514
           C ICL+   E       PC H F K C+ K +++    CP+   +I   + L  +N
Sbjct: 21  CPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDN-EILLENQLFPDN 72

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 40.5 bits (95), Expect = 6e-05
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 458 QCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEI-HRVCPLCRGDICKPDSL 510
            C IC       D+V +  C + +   C+   L E     CP C  +   PD+L
Sbjct: 17  LCLICKDIMT--DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDAL 68

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 39.7 bits (93), Expect = 6e-05
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 11/62 (17%)

Query: 452 QNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLP 511
           +  +  +C  C  E +     ++LPC H     C++    +    CP+C+     P  L 
Sbjct: 2   EEFQFLRCQQCQAEAKC---PKLLPCLHTLCSGCLEASGMQ----CPICQ----APWPLG 50

Query: 512 SE 513
           ++
Sbjct: 51  AD 52

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 42.4 bits (99), Expect = 8e-05
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 458 QCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLP 511
           +C ICL+   E       PC H F K C+ K +++    CP+    + +    P
Sbjct: 20  ECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP 70

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 41.9 bits (98), Expect = 9e-05
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 453 NEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSL 510
           + E+  C ICL +  + +++    C H F   C+   L+  ++ CP CR  +    SL
Sbjct: 52  HSEL-MCPICL-DMLK-NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSL 106

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 7/60 (11%)

Query: 448 SQKYQNEEVAQCYICLLEYEEGDSVRVLPCH-----HEFHKTCVDKWLKE-IHRVCPLCR 501
                      C IC  E ++   + + PCH     H  H+ C+ +W+K    R C LC+
Sbjct: 7   GTSITPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCK 65

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDS 509
           E   QC IC   + E      L C H F   C+++W+K     CP+CR DI     
Sbjct: 62  ENELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSKTY 113

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 94

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 8/39 (20%), Positives = 17/39 (43%)

Query: 453 NEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLK 491
           +   + C +CL EY       +  C   F   C+ ++++
Sbjct: 2   SSGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVE 40

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 5/48 (10%)

Query: 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCR 501
           E++ +C  C       + V +  C H F   CV   +      CP+C 
Sbjct: 20  EKLLRCSRCTNILR--EPVCLGGCEHIFCSNCVSDCIG---TGCPVCY 62

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 40.4 bits (94), Expect = 3e-04
 Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 3/57 (5%)

Query: 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSL 510
           E+   C  C         V    C H   K C+ +  K     CP CR D+ +   +
Sbjct: 76  EQSFMCVCCQELVY--QPV-TTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIM 129

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 458 QCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDI 504
           QC IC+      + V  LPC+H   K C    +++    CP CR  +
Sbjct: 17  QCGICMEILV--EPV-TLPCNHTLCKPCFQSTVEKASLCCPFCRRRV 60

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 39.7 bits (92), Expect = 4e-04
 Identities = 8/51 (15%), Positives = 13/51 (25%), Gaps = 3/51 (5%)

Query: 458 QCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPD 508
            C  C              C H +   C+   L    + C  C  +    +
Sbjct: 33  LCSACRNVLRR---PFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEE 80

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	514
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.65
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.58
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.48
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.48
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.47
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.44
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.38
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.38
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.37
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.35
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.33
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.31
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.29
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.27
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.24
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.24
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	99.23
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.23
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.22
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.22
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.21
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.21
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.19
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	99.19
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.19
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.19
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.16
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.16
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.16
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.14
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.14
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.14
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.12
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.1
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.1
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.09
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.06
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.05
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.04
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.03
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.03
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.02
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.02
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.01
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.97
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.94
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	98.93
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.91
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.91
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.91
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.89
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.88
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.83
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.78
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.76
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.76
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.75
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.74
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.68
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.67
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.66
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.47
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.46
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.46
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.43
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.37
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.33
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.32
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.25
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.16
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.99
3nw0_A	238	Non-structural maintenance of chromosomes element	97.34
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	92.53
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	88.61
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	87.0
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	86.14
1we9_A	64	PHD finger family protein; structural genomics, PH	86.08
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	83.35

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.65  E-value=2.4e-16  Score=130.24  Aligned_cols=81  Identities=37%  Similarity=0.728  Sum_probs=68.9

Q ss_pred             CCCCCCCCCChHHHhcCCceeeeccccccccccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccC
Q 010258          424 MSSIGSIPAPNEVVESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGD  503 (514)
Q Consensus       424 ~SSigp~PApke~IdSLP~~~~~ks~k~~see~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~  503 (514)
                      .......+++++.|+.||...+....... .+..+|+||++.|..++.++.|||+|.||..||..||+. +.+||+||..
T Consensus         9 ~~~~~~~~~s~~~i~~lp~~~~~~~~~~~-~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~   86 (91)
T 2l0b_A            9 SHMVANPPASKESIDALPEILVTEDHGAV-GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCM   86 (91)
T ss_dssp             CCSSCCCCCCHHHHHTSCEEECCTTCSSS-SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCB
T ss_pred             CCCcCCCCCCHHHHHhCCCeeeccccccc-CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCcc
Confidence            34456778899999999998887654332 456789999999999999999999999999999999996 7899999998


Q ss_pred             cCC
Q 010258          504 ICK  506 (514)
Q Consensus       504 V~e  506 (514)
                      +..
T Consensus        87 ~~~   89 (91)
T 2l0b_A           87 FPP   89 (91)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            864

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=1e-15  Score=121.23  Aligned_cols=70  Identities=40%  Similarity=0.922  Sum_probs=58.4

Q ss_pred             HHHhcCCceeeeccccccccccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCC
Q 010258          435 EVVESLPVKLYTKSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKP  507 (514)
Q Consensus       435 e~IdSLP~~~~~ks~k~~see~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~  507 (514)
                      ..++.||...+.....  ..+..+|+||++.|..++.++.|||+|.||..||.+||+. +.+||+||+.+...
T Consensus         4 ~~i~~lp~~~~~~~~~--~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~~   73 (75)
T 1x4j_A            4 GSSGQLPSYRFNPNNH--QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGPS   73 (75)
T ss_dssp             CCCSSCCCEEBCSSSC--SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCCC
T ss_pred             hhHhhCCcEEecCccc--cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCCC
Confidence            4567788877765432  2456789999999999999999999999999999999996 78999999988654

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=3.3e-14  Score=111.82  Aligned_cols=57  Identities=33%  Similarity=0.869  Sum_probs=50.1

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLP  511 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~P  511 (514)
                      .+..+|+||++.|..+..+..|+|+|.||..||.+|++. +.+||+||..|.....++
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~   69 (74)
T 2ep4_A           13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQLAQLS   69 (74)
T ss_dssp             CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSCCSCC
T ss_pred             CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCcccccccccC
Confidence            346689999999999888999999999999999999996 779999999997765543

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.48  E-value=2.3e-14  Score=113.71  Aligned_cols=58  Identities=36%  Similarity=0.924  Sum_probs=51.7

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCCCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS  512 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~Pn  512 (514)
                      .+..+|+||++.|..++.+..|+|+|.||..||.+|++. +.+||+||..+...+..++
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~   70 (78)
T 2ect_A           13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATN   70 (78)
T ss_dssp             SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCCC
T ss_pred             CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCCC
Confidence            446789999999999888899999999999999999986 7899999999988777654

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.47  E-value=5e-14  Score=109.40  Aligned_cols=55  Identities=47%  Similarity=0.997  Sum_probs=48.4

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDS  509 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s  509 (514)
                      ....+|+||++.|..++.++.++|+|.||..||.+|++. +.+||+||..|.....
T Consensus        12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~   66 (69)
T 2kiz_A           12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQLP   66 (69)
T ss_dssp             TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCSCCC
T ss_pred             CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccCcCC
Confidence            456789999999998888999999999999999999996 7889999999866543

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.44  E-value=3.1e-14  Score=105.84  Aligned_cols=51  Identities=47%  Similarity=1.133  Sum_probs=46.0

Q ss_pred             cccccccccccccccCCeeEEeC-CCCcccHHHHHHHHHhcCCCCCccccCcC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLP-CHHEFHKTCVDKWLKEIHRVCPLCRGDIC  505 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLP-CgHvFH~eCIdkWLke~~~TCPLCRa~V~  505 (514)
                      ++..+|+||++.|..++.+..++ |+|.||..||.+|++. +.+||+||+.+.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~   54 (55)
T 1iym_A            3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred             CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence            34568999999999988889998 9999999999999996 889999999874

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.38  E-value=2.3e-13  Score=115.06  Aligned_cols=53  Identities=23%  Similarity=0.470  Sum_probs=42.9

Q ss_pred             cccccccccccccCC---------------eeEEeCCCCcccHHHHHHHHHh----cCCCCCccccCcCCCC
Q 010258          456 VAQCYICLLEYEEGD---------------SVRVLPCHHEFHKTCVDKWLKE----IHRVCPLCRGDICKPD  508 (514)
Q Consensus       456 ~~EC~ICLEefe~gd---------------~VrvLPCgHvFH~eCIdkWLke----~~~TCPLCRa~V~e~~  508 (514)
                      +.+|+||++.|..+.               .++.++|+|.||..||..||..    .+.+||+||..+....
T Consensus        25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~   96 (114)
T 1v87_A           25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT   96 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred             CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCC
Confidence            458999999997653               3458899999999999999952    3678999999886543

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.38  E-value=2.3e-13  Score=105.48  Aligned_cols=57  Identities=30%  Similarity=0.594  Sum_probs=48.8

Q ss_pred             cccccccccccccccC----CeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCCC
Q 010258          454 EEVAQCYICLLEYEEG----DSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLP  511 (514)
Q Consensus       454 ee~~EC~ICLEefe~g----d~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~P  511 (514)
                      ++..+|+||++.|..+    +.++.++|||.||..||.+|++. +.+||+||..+...+..+
T Consensus         8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~   68 (71)
T 3ng2_A            8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHP   68 (71)
T ss_dssp             TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCC
T ss_pred             CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhheee
Confidence            4567899999998764    55689999999999999999996 789999999998776654

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.37  E-value=4e-13  Score=99.62  Aligned_cols=50  Identities=40%  Similarity=0.812  Sum_probs=43.4

Q ss_pred             ccccccccccccccC-CeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcC
Q 010258          455 EVAQCYICLLEYEEG-DSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDIC  505 (514)
Q Consensus       455 e~~EC~ICLEefe~g-d~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~  505 (514)
                      +..+|+||++.|..+ +.++.++|+|.||..||.+|++. ..+||+||..|.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH-TCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc-CCcCCCCCCcCC
Confidence            456799999999654 45788999999999999999997 689999999874

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=4.7e-13  Score=102.71  Aligned_cols=52  Identities=31%  Similarity=0.632  Sum_probs=44.6

Q ss_pred             cccccccccccccccC----CeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCC
Q 010258          454 EEVAQCYICLLEYEEG----DSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICK  506 (514)
Q Consensus       454 ee~~EC~ICLEefe~g----d~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e  506 (514)
                      .+..+|+||++.|...    ..++.++|+|.||..||..|++. +.+||+||..|..
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH   68 (69)
T ss_dssp             TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred             CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence            4567899999999864    34588999999999999999996 8899999998864

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.33  E-value=4.2e-13  Score=101.63  Aligned_cols=54  Identities=30%  Similarity=0.594  Sum_probs=46.4

Q ss_pred             cccccccccccccC----CeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCC
Q 010258          456 VAQCYICLLEYEEG----DSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSL  510 (514)
Q Consensus       456 ~~EC~ICLEefe~g----d~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~  510 (514)
                      ..+|+||++.|..+    +.++.++|||.||..||.+|++. +.+||+||..+...+..
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~   60 (64)
T 2xeu_A            3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYH   60 (64)
T ss_dssp             CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEE
T ss_pred             CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCcccee
Confidence            46799999999764    45688999999999999999996 88999999998776543

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.31  E-value=1.4e-12  Score=112.44  Aligned_cols=51  Identities=33%  Similarity=0.634  Sum_probs=43.3

Q ss_pred             cccccccccccccccCC---------------eeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcC
Q 010258          454 EEVAQCYICLLEYEEGD---------------SVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDIC  505 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd---------------~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~  505 (514)
                      .+++.|+||++.|....               .++.++|+|.||..||.+||+. +.+||+||+++.
T Consensus        35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~  100 (106)
T 3dpl_R           35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE  100 (106)
T ss_dssp             SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred             CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence            35678999999998541               3678899999999999999996 889999999854

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=3.5e-12  Score=100.31  Aligned_cols=56  Identities=21%  Similarity=0.472  Sum_probs=47.1

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCCCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS  512 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~Pn  512 (514)
                      .+...|+||++.|.++  +..++|+|.||..||..|++. +..||+||..+...+..++
T Consensus        13 ~~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~   68 (72)
T 2djb_A           13 TPYILCSICKGYLIDA--TTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG   68 (72)
T ss_dssp             CGGGSCTTTSSCCSSC--EECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred             CCCCCCCCCChHHHCc--CEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence            4467899999998874  333499999999999999986 7899999999988877655

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=9.6e-13  Score=106.88  Aligned_cols=51  Identities=37%  Similarity=0.888  Sum_probs=40.5

Q ss_pred             cccccccccccccc-----------CCeeEEeC-CCCcccHHHHHHHHHhcCCCCCccccCcCC
Q 010258          455 EVAQCYICLLEYEE-----------GDSVRVLP-CHHEFHKTCVDKWLKEIHRVCPLCRGDICK  506 (514)
Q Consensus       455 e~~EC~ICLEefe~-----------gd~VrvLP-CgHvFH~eCIdkWLke~~~TCPLCRa~V~e  506 (514)
                      ++.+|+||++.|..           ++.++.++ |+|.||..||.+||+. +.+||+||+++..
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~   76 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV   76 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence            34568888888754           34455665 9999999999999996 7899999998754

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.24  E-value=3.6e-12  Score=98.42  Aligned_cols=49  Identities=31%  Similarity=0.845  Sum_probs=42.6

Q ss_pred             ccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCC
Q 010258          455 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICK  506 (514)
Q Consensus       455 e~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e  506 (514)
                      ...+|+||++.+..  .++.++|||.||..||..|++. +.+||+||..+..
T Consensus         4 ~~~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   52 (68)
T 1chc_A            4 VAERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred             CCCCCeeCCccccC--CcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence            45679999999865  3688999999999999999996 7899999998854

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=7.5e-12  Score=100.41  Aligned_cols=54  Identities=28%  Similarity=0.620  Sum_probs=45.5

Q ss_pred             cccccccccccccccCCe-eEEeCCCCcccHHHHHHHHHhc--CCCCCccccCcCCC
Q 010258          454 EEVAQCYICLLEYEEGDS-VRVLPCHHEFHKTCVDKWLKEI--HRVCPLCRGDICKP  507 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~-VrvLPCgHvFH~eCIdkWLke~--~~TCPLCRa~V~e~  507 (514)
                      .+..+|+||++.|...+. .+.++|||.||..||..|++..  ...||+||..+...
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   69 (88)
T 2ct2_A           13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT   69 (88)
T ss_dssp             CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred             cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence            456789999999988654 6888999999999999999962  37899999987654

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=7.2e-12  Score=103.16  Aligned_cols=56  Identities=30%  Similarity=0.786  Sum_probs=45.8

Q ss_pred             cccccccccccccccCCeeEEeCCC-----CcccHHHHHHHHHhcC-CCCCccccCcCCCCCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCH-----HEFHKTCVDKWLKEIH-RVCPLCRGDICKPDSL  510 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCg-----HvFH~eCIdkWLke~~-~TCPLCRa~V~e~~s~  510 (514)
                      .+..+|.||+++|.+++.+ ++||+     |.||..||++||...+ .+||+||..+.....+
T Consensus        13 ~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~   74 (80)
T 2d8s_A           13 SSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKL   74 (80)
T ss_dssp             TTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCS
T ss_pred             CCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCccc
Confidence            4567899999999877766 69996     9999999999999632 5899999998654443

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=6.3e-12  Score=97.17  Aligned_cols=53  Identities=25%  Similarity=0.521  Sum_probs=44.5

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDS  509 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s  509 (514)
                      .+...|+||++.+..+   +.++|||.||..||.+|++.....||+||..+...+.
T Consensus        13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i   65 (66)
T 2ecy_A           13 EDKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV   65 (66)
T ss_dssp             CCCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred             CcCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence            4467899999998875   4489999999999999996446789999999877654

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=2.8e-12  Score=100.63  Aligned_cols=51  Identities=33%  Similarity=0.558  Sum_probs=43.5

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPD  508 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~  508 (514)
                      .+..+|+||++.+...   +.++|+|.||..||..|++. +..||+||..|....
T Consensus        13 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~   63 (71)
T 2d8t_A           13 LTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPEDF   63 (71)
T ss_dssp             SSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCHHH
T ss_pred             CCCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCHhh
Confidence            4467899999998764   77899999999999999996 789999999886543

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.22  E-value=1.2e-11  Score=98.13  Aligned_cols=54  Identities=28%  Similarity=0.657  Sum_probs=44.9

Q ss_pred             cccccccccccccccCCeeEEeC-CCCcccHHHHHHHHHhc-CCCCCccccCcCCCCCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLP-CHHEFHKTCVDKWLKEI-HRVCPLCRGDICKPDSL  510 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLP-CgHvFH~eCIdkWLke~-~~TCPLCRa~V~e~~s~  510 (514)
                      .+...|+||++.|.++   +.++ |||.||..||..|++.. ...||+||..+...+.+
T Consensus        13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~   68 (74)
T 2yur_A           13 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDAL   68 (74)
T ss_dssp             CGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTT
T ss_pred             CCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcccc
Confidence            4467899999999875   6799 99999999999999852 26899999987666554

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.21  E-value=2.9e-12  Score=99.72  Aligned_cols=52  Identities=35%  Similarity=0.926  Sum_probs=45.0

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSL  510 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~  510 (514)
                      .+..+|+||++.+..    +.++|+|.||..||.+|++. +..||+||..+...+..
T Consensus        13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~   64 (70)
T 2ecn_A           13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTGANES   64 (70)
T ss_dssp             CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTCCCCC
T ss_pred             CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccCCCcc
Confidence            346789999999876    78999999999999999995 88999999999766543

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.21  E-value=4.9e-12  Score=100.28  Aligned_cols=56  Identities=20%  Similarity=0.488  Sum_probs=47.6

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCCCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS  512 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~Pn  512 (514)
                      .+...|+||++.|.++   +.++|||.||..||..|++..+.+||+||..+...+..|+
T Consensus         6 ~~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n   61 (78)
T 1t1h_A            6 PEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPN   61 (78)
T ss_dssp             SSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEEC
T ss_pred             cccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccC
Confidence            4467899999998875   6789999999999999998547889999999987766655

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=1e-11  Score=96.89  Aligned_cols=52  Identities=27%  Similarity=0.552  Sum_probs=43.4

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHh--cCCCCCccccCcCCCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE--IHRVCPLCRGDICKPD  508 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke--~~~TCPLCRa~V~e~~  508 (514)
                      .+..+|+||++.|..+   +.++|||.||..||..|++.  ....||+||..+...+
T Consensus        18 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   71 (73)
T 2ysl_A           18 QEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA   71 (73)
T ss_dssp             CCCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred             ccCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence            4467899999998863   67799999999999999972  3568999999987654

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=99.19  E-value=1.8e-12  Score=114.28  Aligned_cols=52  Identities=33%  Similarity=0.638  Sum_probs=1.4

Q ss_pred             cccccccccccccccC-------------C--eeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCC
Q 010258          454 EEVAQCYICLLEYEEG-------------D--SVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICK  506 (514)
Q Consensus       454 ee~~EC~ICLEefe~g-------------d--~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e  506 (514)
                      .+++.|+||++.|...             +  .+..++|+|.||..||.+||+. +.+||+||+++..
T Consensus        46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~~  112 (117)
T 4a0k_B           46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWEF  112 (117)
T ss_dssp             CCC-----------------------------------------------------------------
T ss_pred             CCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeeee
Confidence            3457899999999753             2  2445689999999999999996 8899999998643

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.19  E-value=1.5e-11  Score=97.37  Aligned_cols=56  Identities=27%  Similarity=0.520  Sum_probs=46.6

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhc-----CCCCCccccCcCCCCCCCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEI-----HRVCPLCRGDICKPDSLPS  512 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~-----~~TCPLCRa~V~e~~s~Pn  512 (514)
                      .+..+|+||++.|..+   +.++|+|.||..||..|++..     ...||+||..+...+..++
T Consensus        17 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n   77 (85)
T 2ecw_A           17 KEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPN   77 (85)
T ss_dssp             CTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEEC
T ss_pred             ccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcC
Confidence            3456899999998875   578999999999999999862     5689999999887665544

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=1.1e-11  Score=99.29  Aligned_cols=48  Identities=23%  Similarity=0.581  Sum_probs=42.1

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDIC  505 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~  505 (514)
                      .+...|+||++.|..+   ++++|+|.||..||..|++. ...||+||..+.
T Consensus        13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~   60 (81)
T 2csy_A           13 EIPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRA-TPRCYICDQPTG   60 (81)
T ss_dssp             CCCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC
T ss_pred             CCCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc
Confidence            3456899999998764   57999999999999999986 789999999885

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.16  E-value=1.4e-11  Score=94.91  Aligned_cols=56  Identities=23%  Similarity=0.411  Sum_probs=45.5

Q ss_pred             ccccccccc-ccccCCe-eEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCCC
Q 010258          456 VAQCYICLL-EYEEGDS-VRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLP  511 (514)
Q Consensus       456 ~~EC~ICLE-efe~gd~-VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~P  511 (514)
                      ...|+||++ .|..+.. ++.++|||.||..||.+|+.+....||+||..+...+..+
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~   60 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRV   60 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEE
T ss_pred             CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccccee
Confidence            457999999 7777643 3568999999999999998764678999999997766543

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=2.3e-11  Score=96.30  Aligned_cols=56  Identities=29%  Similarity=0.546  Sum_probs=46.9

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHh-----cCCCCCccccCcCCCCCCCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE-----IHRVCPLCRGDICKPDSLPS  512 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke-----~~~TCPLCRa~V~e~~s~Pn  512 (514)
                      .+..+|+||++.|..+   +.++|+|.||..||..|++.     ....||+||..+...+..++
T Consensus        17 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n   77 (85)
T 2ecv_A           17 KEEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPN   77 (85)
T ss_dssp             CCCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCS
T ss_pred             cCCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCcc
Confidence            3457899999998775   56799999999999999985     26789999999987776665

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.16  E-value=7.5e-12  Score=110.27  Aligned_cols=48  Identities=38%  Similarity=0.871  Sum_probs=42.0

Q ss_pred             ccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCC
Q 010258          455 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICK  506 (514)
Q Consensus       455 e~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e  506 (514)
                      +...|+||++.|..+   +.+||||.||..||..|+.. +.+||+||.++..
T Consensus        52 ~~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   99 (138)
T 4ayc_A           52 NELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKR-KIECPICRKDIKS   99 (138)
T ss_dssp             HHSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCC
T ss_pred             ccCCCcccCcccCCc---eECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCC
Confidence            345799999998764   78999999999999999996 7899999998854

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.14  E-value=8.4e-12  Score=104.62  Aligned_cols=55  Identities=25%  Similarity=0.662  Sum_probs=44.5

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSL  510 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~  510 (514)
                      .+...|+||++.|..+  +..++|||.||..||..|++.....||+||..+...+..
T Consensus        20 ~~~~~C~IC~~~~~~p--~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~   74 (100)
T 3lrq_A           20 AEVFRCFICMEKLRDA--RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELV   74 (100)
T ss_dssp             HHHTBCTTTCSBCSSE--EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCE
T ss_pred             CCCCCCccCCccccCc--cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhH
Confidence            3467899999998763  333899999999999999997337999999998665543

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.14  E-value=1.9e-11  Score=105.28  Aligned_cols=55  Identities=27%  Similarity=0.459  Sum_probs=45.1

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCC-CCCCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICK-PDSLP  511 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e-~~s~P  511 (514)
                      .+...|+||++.|..+   +.++|||.||..||..|+......||+||..+.. ....+
T Consensus        50 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~  105 (124)
T 3fl2_A           50 EETFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQV  105 (124)
T ss_dssp             HHHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCC
T ss_pred             ccCCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCC
Confidence            3456899999999875   6789999999999999998545599999999977 33334

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.14  E-value=6e-12  Score=99.33  Aligned_cols=56  Identities=27%  Similarity=0.483  Sum_probs=46.1

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhc------CCCCCccccCcCCCCCCCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEI------HRVCPLCRGDICKPDSLPS  512 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~------~~TCPLCRa~V~e~~s~Pn  512 (514)
                      .+..+|+||++.|..+   +.++|||.||..||..|++..      ...||+||..+...+..++
T Consensus        10 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n   71 (79)
T 2egp_A           10 QEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQAN   71 (79)
T ss_dssp             CCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTC
T ss_pred             ccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcC
Confidence            4567899999998775   558999999999999999852      5689999999977655554

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.12  E-value=2.6e-11  Score=102.95  Aligned_cols=55  Identities=29%  Similarity=0.581  Sum_probs=46.7

Q ss_pred             cccccccccccccccC----CeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCC
Q 010258          454 EEVAQCYICLLEYEEG----DSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDS  509 (514)
Q Consensus       454 ee~~EC~ICLEefe~g----d~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s  509 (514)
                      .+..+|+||++.|.++    +.++.++|||.||..||.+||+. +.+||+||..+.....
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l   63 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRY   63 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCE
T ss_pred             CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCccccc
Confidence            3457899999999764    45689999999999999999996 7799999998876544

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.10  E-value=1.6e-11  Score=101.74  Aligned_cols=53  Identities=25%  Similarity=0.686  Sum_probs=43.9

Q ss_pred             ccccccccccccccCCeeEEe-CCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCCC
Q 010258          455 EVAQCYICLLEYEEGDSVRVL-PCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLP  511 (514)
Q Consensus       455 e~~EC~ICLEefe~gd~VrvL-PCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~P  511 (514)
                      +...|+||++.|..+   +.+ +|||.||..||..|+.. +..||+||..+...+..+
T Consensus        21 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~   74 (99)
T 2y43_A           21 DLLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKN   74 (99)
T ss_dssp             HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEE
T ss_pred             CCCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCc
Confidence            456899999998874   455 89999999999999995 789999999887654443

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.10  E-value=6e-11  Score=96.73  Aligned_cols=50  Identities=24%  Similarity=0.594  Sum_probs=42.4

Q ss_pred             cccccccccccccccCCeeEEeC-CCCcccHHHHHHHHHhc-CCCCCccccCcCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLP-CHHEFHKTCVDKWLKEI-HRVCPLCRGDICK  506 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLP-CgHvFH~eCIdkWLke~-~~TCPLCRa~V~e  506 (514)
                      .+...|+||++.|.++   +.++ |||.||..||..|+... +..||+||..+..
T Consensus        11 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~   62 (92)
T 3ztg_A           11 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS   62 (92)
T ss_dssp             CTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCC
T ss_pred             CcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCC
Confidence            4567899999999875   7889 99999999999999752 3689999999743

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.09  E-value=7.7e-11  Score=90.06  Aligned_cols=44  Identities=30%  Similarity=0.614  Sum_probs=37.7

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHh--cCCCCCcc
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE--IHRVCPLC  500 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke--~~~TCPLC  500 (514)
                      .+..+|+||++.|.++   +.++|||.||..||.+|++.  ....||+|
T Consensus        18 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           18 QEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             ccCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            4567899999998875   67899999999999999984  35689998

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.06  E-value=4e-11  Score=101.78  Aligned_cols=56  Identities=29%  Similarity=0.559  Sum_probs=47.2

Q ss_pred             cccccccccccccccC----CeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCC
Q 010258          454 EEVAQCYICLLEYEEG----DSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSL  510 (514)
Q Consensus       454 ee~~EC~ICLEefe~g----d~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~  510 (514)
                      ++..+|+||++.|...    ..++.++|||.||..||.+||+. +.+||+||..+...+..
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~  129 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYH  129 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEE
T ss_pred             CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcce
Confidence            4567899999998763    34588999999999999999996 78999999999776543

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.05  E-value=5.7e-11  Score=99.41  Aligned_cols=55  Identities=36%  Similarity=0.646  Sum_probs=44.6

Q ss_pred             ccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhc--CCCCCccccCcCCCCCCCC
Q 010258          455 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEI--HRVCPLCRGDICKPDSLPS  512 (514)
Q Consensus       455 e~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~--~~TCPLCRa~V~e~~s~Pn  512 (514)
                      +..+|+||++.|..+   +.++|||.||..||..|+...  ...||+||..+......++
T Consensus        20 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~   76 (112)
T 1jm7_A           20 KILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQES   76 (112)
T ss_dssp             HHTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCC
T ss_pred             CCCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCcc
Confidence            356799999998775   558999999999999999852  2489999999887665543

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.04  E-value=6e-11  Score=100.94  Aligned_cols=54  Identities=26%  Similarity=0.498  Sum_probs=45.2

Q ss_pred             ccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCCC
Q 010258          455 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLP  511 (514)
Q Consensus       455 e~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~P  511 (514)
                      +...|+||++.+.++   +.++|||.||..||..|++.....||+||..+...+..+
T Consensus        22 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~   75 (116)
T 1rmd_A           22 KSISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLES   75 (116)
T ss_dssp             HHTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBC
T ss_pred             CCCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccc
Confidence            456899999998764   568999999999999999964678999999987665443

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.03  E-value=9.1e-11  Score=87.51  Aligned_cols=44  Identities=32%  Similarity=0.881  Sum_probs=37.2

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHh--cCCCCCcc
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE--IHRVCPLC  500 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke--~~~TCPLC  500 (514)
                      .+...|+||++.|..+   +.++|+|.||..||..|++.  .+..||+|
T Consensus        13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           13 QVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             ccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            3467899999999875   56899999999999999653  46789998

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.03  E-value=9.5e-11  Score=105.71  Aligned_cols=50  Identities=24%  Similarity=0.489  Sum_probs=43.3

Q ss_pred             ccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCC
Q 010258          455 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKP  507 (514)
Q Consensus       455 e~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~  507 (514)
                      +...|+||++.|..+   +.++|||.||..||..|+......||+||..+...
T Consensus        77 ~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           77 QSFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             cCCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            456899999998875   66899999999999999996445899999999876

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.02  E-value=1.2e-10  Score=98.03  Aligned_cols=51  Identities=25%  Similarity=0.707  Sum_probs=43.0

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKP  507 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~  507 (514)
                      .+...|+||++.|.++  +..++|||.||..||..|++. ...||+||..+...
T Consensus        13 ~~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~   63 (108)
T 2ckl_A           13 NPHLMCVLCGGYFIDA--TTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKT   63 (108)
T ss_dssp             GGGTBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSS
T ss_pred             CCcCCCccCChHHhCc--CEeCCCCChhhHHHHHHHHHh-CCcCcCCCcccccc
Confidence            4567899999998764  444499999999999999996 78999999998764

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.02  E-value=7.5e-11  Score=106.16  Aligned_cols=51  Identities=25%  Similarity=0.566  Sum_probs=42.6

Q ss_pred             ccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCC
Q 010258          455 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKP  507 (514)
Q Consensus       455 e~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~  507 (514)
                      +...|+||++.|..+  +..++|||.||..||..|++..+..||+||..+...
T Consensus        53 ~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  103 (165)
T 2ckl_B           53 SELMCPICLDMLKNT--MTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK  103 (165)
T ss_dssp             HHHBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSG
T ss_pred             CCCCCcccChHhhCc--CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCc
Confidence            456899999998863  444599999999999999996577899999988543

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.01  E-value=1.2e-10  Score=99.81  Aligned_cols=55  Identities=29%  Similarity=0.634  Sum_probs=45.6

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLP  511 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~P  511 (514)
                      .+...|+||++.+..+   +.++|||.||..||..|++.....||+||..+...+..+
T Consensus        16 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~   70 (118)
T 3hct_A           16 ESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP   70 (118)
T ss_dssp             CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEE
T ss_pred             CCCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhccc
Confidence            4567899999998875   678999999999999999964559999999987655443

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.97  E-value=6.2e-11  Score=100.69  Aligned_cols=50  Identities=30%  Similarity=0.672  Sum_probs=42.8

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICK  506 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e  506 (514)
                      .+...|+||++.|..+   +.++|||.||..||..|+......||+||..+..
T Consensus        13 ~~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           13 LSECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             HHHHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             CCCCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence            3467899999998875   7789999999999999998656789999998753

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.94  E-value=2.8e-10  Score=93.61  Aligned_cols=55  Identities=11%  Similarity=0.048  Sum_probs=48.1

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCCCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS  512 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~Pn  512 (514)
                      .+...|+||++.|.++   ++++|||.|+..||..||.. +.+||+|+..+...+..|+
T Consensus        12 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn   66 (85)
T 2kr4_A           12 PDEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPV   66 (85)
T ss_dssp             CTTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEEC
T ss_pred             chheECcccCchhcCC---eECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchH
Confidence            3467899999999986   88999999999999999996 8899999999877666655

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=4e-10  Score=92.30  Aligned_cols=51  Identities=25%  Similarity=0.539  Sum_probs=41.3

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhc-CCCCCccccCcCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEI-HRVCPLCRGDICK  506 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~-~~TCPLCRa~V~e  506 (514)
                      +...+|+||++.+..++  ....|+|.||..||.+||+.. +.+||+||.+...
T Consensus        13 ~~i~~C~IC~~~i~~g~--~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~   64 (74)
T 2ct0_A           13 DAVKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH   64 (74)
T ss_dssp             SSSCBCSSSCCBCSSSE--ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred             CCCCcCcchhhHcccCC--ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence            44678999999998763  233799999999999999862 2789999998743

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.91  E-value=4e-10  Score=95.73  Aligned_cols=55  Identities=11%  Similarity=0.062  Sum_probs=48.8

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCCCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS  512 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~Pn  512 (514)
                      .+...|+||++.|.++   ++++|||.|+..||..||.. +.+||+|+..+...+..|+
T Consensus        27 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~pn   81 (100)
T 2kre_A           27 PDEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEPV   81 (100)
T ss_dssp             STTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSEEC
T ss_pred             cHhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhceEC
Confidence            4567899999999987   88999999999999999995 8899999999988777665

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.91  E-value=4e-10  Score=106.35  Aligned_cols=56  Identities=13%  Similarity=0.265  Sum_probs=47.8

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCCCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS  512 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~Pn  512 (514)
                      .+...|+||++.|.++   +++||||.||..||..|+.....+||+||.++...+..||
T Consensus       206 ~~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n  261 (281)
T 2c2l_A          206 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPN  261 (281)
T ss_dssp             CSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEEC
T ss_pred             CcccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCccc
Confidence            3467899999999986   7899999999999999999645569999999977766665

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.91  E-value=4.8e-10  Score=94.94  Aligned_cols=55  Identities=15%  Similarity=0.128  Sum_probs=48.5

Q ss_pred             cccccccccccccccCCeeEEeCCC-CcccHHHHHHHHHhcCCCCCccccCcCCCCCCCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCH-HEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS  512 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCg-HvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~Pn  512 (514)
                      .+...|+||++.|.++   ++++|| |.|+..||..||.. +.+||+||..+...+..|+
T Consensus        20 p~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn   75 (98)
T 1wgm_A           20 CDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPN   75 (98)
T ss_dssp             CTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEEC
T ss_pred             cHhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEc
Confidence            3467899999999987   789999 99999999999996 7899999999988777665

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.89  E-value=6.9e-10  Score=90.69  Aligned_cols=55  Identities=20%  Similarity=0.511  Sum_probs=43.4

Q ss_pred             cccccccccccccccCCeeEEe--CCCCcccHHHHHHHHHhcCCCCCccccCcCCCCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVL--PCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDS  509 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvL--PCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s  509 (514)
                      ++..+|+||++.+...+. ..+  +|||.||..||..|+......||+||..+.....
T Consensus         9 ~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~   65 (78)
T 1e4u_A            9 EDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA   65 (78)
T ss_dssp             CCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred             ccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence            456789999999865433 344  4999999999999987556789999998876544

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.88  E-value=4.9e-10  Score=100.24  Aligned_cols=50  Identities=18%  Similarity=0.305  Sum_probs=42.7

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICK  506 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e  506 (514)
                      ++...|+||++.+.++   +.++|||.||..||..|++.....||+||.++..
T Consensus        29 ~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~   78 (141)
T 3knv_A           29 EAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY   78 (141)
T ss_dssp             CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred             CcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence            4567899999999876   6689999999999999998644589999997643

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.83  E-value=4.6e-10  Score=96.13  Aligned_cols=53  Identities=26%  Similarity=0.501  Sum_probs=44.2

Q ss_pred             cccccccccccccccCCeeEEe-CCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCCCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVL-PCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS  512 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvL-PCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~Pn  512 (514)
                      .+...|+||++.|..+   +.+ +|||.||..||..|+.   ..||+||..+...+..++
T Consensus        20 ~~~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n   73 (117)
T 1jm7_B           20 EKLLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKIN   73 (117)
T ss_dssp             HHTTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCC
T ss_pred             hhCCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCcccccccc
Confidence            3467899999999875   566 9999999999999997   689999999876655554

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.78  E-value=1e-09  Score=83.28  Aligned_cols=49  Identities=22%  Similarity=0.532  Sum_probs=41.0

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDS  509 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s  509 (514)
                      .+...|+||++.|..+   +.|+|||.||..||..|    ...||+||+.+..+..
T Consensus         4 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~~~~   52 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGAD   52 (56)
T ss_dssp             CCCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCCSS
T ss_pred             ccCCCceEeCCccCCe---EEcCCCCcccHHHHccC----CCCCCcCCcEeecCCc
Confidence            4567899999999875   77999999999999884    4689999999876544

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.76  E-value=2.9e-09  Score=83.28  Aligned_cols=48  Identities=29%  Similarity=0.583  Sum_probs=39.9

Q ss_pred             cccccccccccccccCCeeEEe--CCCCc-ccHHHHHHHHHhcCCCCCccccCcC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVL--PCHHE-FHKTCVDKWLKEIHRVCPLCRGDIC  505 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvL--PCgHv-FH~eCIdkWLke~~~TCPLCRa~V~  505 (514)
                      ++..+|.||++.+.+.   +.+  ||||. |+..|+..|++. +..||+||++|.
T Consensus         6 ~~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~   56 (64)
T 2vje_A            6 NAIEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ   56 (64)
T ss_dssp             GGGSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred             CCcCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence            3456799999986653   444  99999 899999999985 789999999874

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.76  E-value=2.6e-09  Score=88.98  Aligned_cols=56  Identities=20%  Similarity=0.376  Sum_probs=44.6

Q ss_pred             cccccccccccccccCCeeEEeC-CCCcccHHHHHHHHHhc-----CCCCCc--cccC-cCCCCCCCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLP-CHHEFHKTCVDKWLKEI-----HRVCPL--CRGD-ICKPDSLPS  512 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLP-CgHvFH~eCIdkWLke~-----~~TCPL--CRa~-V~e~~s~Pn  512 (514)
                      .+...|+||++.|.++   ++++ |||.|+..||..||...     ..+||+  |+.. +...+..|+
T Consensus         5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn   69 (94)
T 2yu4_A            5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQD   69 (94)
T ss_dssp             SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEEC
T ss_pred             CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCC
Confidence            3457899999999986   7776 99999999999999863     258999  9876 655555554

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.75  E-value=3.8e-09  Score=109.49  Aligned_cols=50  Identities=28%  Similarity=0.752  Sum_probs=42.8

Q ss_pred             cccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCC
Q 010258          456 VAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPD  508 (514)
Q Consensus       456 ~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~  508 (514)
                      ..+|+||++.+..   ++.+||||.||..||..|+......||+||..+....
T Consensus       332 ~~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~  381 (389)
T 2y1n_A          332 FQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE  381 (389)
T ss_dssp             SSBCTTTSSSBCC---EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred             CCCCCccCcCCCC---eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence            4689999999866   4889999999999999999844789999999886543

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.74  E-value=3.4e-09  Score=95.62  Aligned_cols=55  Identities=29%  Similarity=0.634  Sum_probs=45.9

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLP  511 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~P  511 (514)
                      .+...|+||++.|.++   +.++|||.||..||.+|++.....||+||..+...+.++
T Consensus        16 ~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~   70 (170)
T 3hcs_A           16 ESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP   70 (170)
T ss_dssp             CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEE
T ss_pred             CCCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhh
Confidence            4567899999998875   668999999999999999864569999999987655443

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.68  E-value=7.3e-09  Score=80.75  Aligned_cols=48  Identities=21%  Similarity=0.525  Sum_probs=39.4

Q ss_pred             cccccccccccccccCCeeEEe--CCCCc-ccHHHHHHHHHhcCCCCCccccCcC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVL--PCHHE-FHKTCVDKWLKEIHRVCPLCRGDIC  505 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvL--PCgHv-FH~eCIdkWLke~~~TCPLCRa~V~  505 (514)
                      +...+|.||++...+.   ..+  ||||. ||..|+..|.+. ...||+||++|.
T Consensus         5 ~~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~   55 (63)
T 2vje_B            5 NLLKPCSLCEKRPRDG---NIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQ   55 (63)
T ss_dssp             GGGSBCTTTSSSBSCE---EEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCC
T ss_pred             CcCCCCcccCCcCCCe---EEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhh
Confidence            3456799999986552   444  99998 999999999985 689999999884

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.67  E-value=6.9e-09  Score=97.41  Aligned_cols=56  Identities=13%  Similarity=0.255  Sum_probs=47.4

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCCCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS  512 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~Pn  512 (514)
                      .+...|+||++.|.++   +++||||.|+..||..||.....+||+|+.++...+..||
T Consensus       104 p~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN  159 (179)
T 2f42_A          104 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPN  159 (179)
T ss_dssp             CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEEC
T ss_pred             cHhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcch
Confidence            3467799999999986   7889999999999999998633479999999887776665

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.66  E-value=4.3e-09  Score=84.01  Aligned_cols=44  Identities=30%  Similarity=0.609  Sum_probs=37.9

Q ss_pred             ccccccccccccccCCeeEEeCCCCc-ccHHHHHHHHHhcCCCCCccccCcCC
Q 010258          455 EVAQCYICLLEYEEGDSVRVLPCHHE-FHKTCVDKWLKEIHRVCPLCRGDICK  506 (514)
Q Consensus       455 e~~EC~ICLEefe~gd~VrvLPCgHv-FH~eCIdkWLke~~~TCPLCRa~V~e  506 (514)
                      +...|+||++.+.+   .+.+||||. ||..|+..|     ..||+||..+..
T Consensus        23 ~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~   67 (74)
T 4ic3_A           23 EEKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF   67 (74)
T ss_dssp             HHTBCTTTSSSBCC---EEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred             cCCCCCCCCCCCCC---EEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence            45679999998766   478899999 999999998     589999998754

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.47  E-value=1e-07  Score=74.61  Aligned_cols=49  Identities=29%  Similarity=0.725  Sum_probs=38.3

Q ss_pred             cccccccccccccccCCeeEEeCCC--C---cccHHHHHHHHHh-cCCCCCccccCcC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCH--H---EFHKTCVDKWLKE-IHRVCPLCRGDIC  505 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCg--H---vFH~eCIdkWLke-~~~TCPLCRa~V~  505 (514)
                      ++...|.||+++.  ++.+ ++||.  |   .||..||.+|+.. .+.+||+|+..+.
T Consensus         4 ~~~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            4 EDVPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            4567899999984  3334 68955  4   9999999999984 3678999998764

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.46  E-value=3e-08  Score=79.03  Aligned_cols=45  Identities=29%  Similarity=0.596  Sum_probs=37.0

Q ss_pred             ccccccccccccccCCeeEEeCCCCc-ccHHHHHHHHHhcCCCCCccccCcCCC
Q 010258          455 EVAQCYICLLEYEEGDSVRVLPCHHE-FHKTCVDKWLKEIHRVCPLCRGDICKP  507 (514)
Q Consensus       455 e~~EC~ICLEefe~gd~VrvLPCgHv-FH~eCIdkWLke~~~TCPLCRa~V~e~  507 (514)
                      +..+|+||++.+..   ++.+||||. ||..|+..     ...||+||..+...
T Consensus        24 ~~~~C~IC~~~~~~---~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~~   69 (75)
T 2ecg_A           24 EEKLCKICMDRNIA---IVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITFK   69 (75)
T ss_dssp             HHHSCSSSCSSCCC---BCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCCC
T ss_pred             CCCCCCcCCCCCCC---EEEecCCCHHHHHHHhhC-----CCCCccCCceecCc
Confidence            45679999998766   467899999 99999953     36899999988653

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.46  E-value=2.2e-08  Score=103.04  Aligned_cols=52  Identities=27%  Similarity=0.751  Sum_probs=40.5

Q ss_pred             cccccccccccccccCCee----E-EeCCCCcccHHHHHHHHHhcC----------CCCCccccCcC
Q 010258          454 EEVAQCYICLLEYEEGDSV----R-VLPCHHEFHKTCVDKWLKEIH----------RVCPLCRGDIC  505 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~V----r-vLPCgHvFH~eCIdkWLke~~----------~TCPLCRa~V~  505 (514)
                      +...+|+||++.+.++..+    . .+.|+|.||..||.+||+...          ..||+||++|.
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs  372 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS  372 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence            4567899999998873322    1 346999999999999998522          47999999875

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.43  E-value=8.4e-08  Score=79.15  Aligned_cols=49  Identities=22%  Similarity=0.548  Sum_probs=39.8

Q ss_pred             ccccccccccccccCCeeEEeCCCCcccHHHHHHHHHh----c---CCCCCc--cccC
Q 010258          455 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE----I---HRVCPL--CRGD  503 (514)
Q Consensus       455 e~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke----~---~~TCPL--CRa~  503 (514)
                      +..+|+||++.+..++.+...+|+|.||..||..|++.    .   ...||.  |+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            35679999999887765566689999999999999973    1   237999  9987

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.37  E-value=8.3e-08  Score=75.13  Aligned_cols=52  Identities=12%  Similarity=0.160  Sum_probs=45.0

Q ss_pred             ccccccccccccCCeeEEe-CCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCCCC
Q 010258          457 AQCYICLLEYEEGDSVRVL-PCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS  512 (514)
Q Consensus       457 ~EC~ICLEefe~gd~VrvL-PCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~Pn  512 (514)
                      ..|+||++.+.++   +++ +|||.|.+.||.+||++ +.+||+++.++...+..|+
T Consensus         4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Lip~   56 (61)
T 2bay_A            4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEI   56 (61)
T ss_dssp             CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEEC
T ss_pred             EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcEEC
Confidence            4699999999975   666 89999999999999996 6789999999988777664

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.33  E-value=3.1e-07  Score=72.86  Aligned_cols=46  Identities=28%  Similarity=0.694  Sum_probs=38.0

Q ss_pred             cccccccccccccccCCeeEEeCCCCc-ccHHHHHHHHHhcCCCCCccccCcCCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHE-FHKTCVDKWLKEIHRVCPLCRGDICKP  507 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHv-FH~eCIdkWLke~~~TCPLCRa~V~e~  507 (514)
                      .+...|.||++....   ++.+||+|. ||..|+..     ...||+||..|...
T Consensus        13 ~~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~~   59 (68)
T 2ea5_A           13 ENSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQES   59 (68)
T ss_dssp             CCSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCCE
T ss_pred             CCCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc-----CCCCCCCCcchhce
Confidence            346789999998655   688999999 99999983     46899999988653

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.32  E-value=1e-07  Score=77.58  Aligned_cols=44  Identities=27%  Similarity=0.714  Sum_probs=36.8

Q ss_pred             ccccccccccccccCCeeEEeCCCCc-ccHHHHHHHHHhcCCCCCccccCcCC
Q 010258          455 EVAQCYICLLEYEEGDSVRVLPCHHE-FHKTCVDKWLKEIHRVCPLCRGDICK  506 (514)
Q Consensus       455 e~~EC~ICLEefe~gd~VrvLPCgHv-FH~eCIdkWLke~~~TCPLCRa~V~e  506 (514)
                      +...|.||++.+..   ++.+||||. ||..|+..|     ..||+||..+..
T Consensus        17 ~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~   61 (79)
T 2yho_A           17 EAMLCMVCCEEEIN---STFCPCGHTVCCESCAAQL-----QSCPVCRSRVEH   61 (79)
T ss_dssp             HHTBCTTTSSSBCC---EEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCE
T ss_pred             CCCEeEEeCcccCc---EEEECCCCHHHHHHHHHhc-----CcCCCCCchhhC
Confidence            35679999998665   588999999 999999876     389999998753

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.25  E-value=1.6e-07  Score=93.37  Aligned_cols=57  Identities=23%  Similarity=0.452  Sum_probs=45.4

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHh-cCCCCCc--cccCcCCCCCCCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE-IHRVCPL--CRGDICKPDSLPS  512 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke-~~~TCPL--CRa~V~e~~s~Pn  512 (514)
                      .....|+||++.|.++  |+.+.|||.|++.||..|++. ....||+  |+..+...+..|+
T Consensus       179 ~~el~CPIcl~~f~DP--Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN  238 (267)
T 3htk_C          179 KIELTCPITCKPYEAP--LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRD  238 (267)
T ss_dssp             BCCSBCTTTSSBCSSE--EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEEC
T ss_pred             ceeeECcCccCcccCC--eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcC
Confidence            3466899999999875  555689999999999999985 2357999  9998876655544

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.16  E-value=3.1e-07  Score=93.49  Aligned_cols=45  Identities=33%  Similarity=0.756  Sum_probs=38.5

Q ss_pred             cccccccccccccccCCeeEEeCCCCc-ccHHHHHHHHHhcCCCCCccccCcCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHE-FHKTCVDKWLKEIHRVCPLCRGDICK  506 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHv-FH~eCIdkWLke~~~TCPLCRa~V~e  506 (514)
                      .+...|+||++.+..   .+.+||||. ||..|+..|     ..||+||..|..
T Consensus       293 ~~~~~C~IC~~~~~~---~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~  338 (345)
T 3t6p_A          293 QEERTCKVCMDKEVS---VVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG  338 (345)
T ss_dssp             HTTCBCTTTSSSBCC---EEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred             cCCCCCCccCCcCCc---eEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence            345789999999876   478899999 999999988     589999998854

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.99  E-value=4.1e-06  Score=72.76  Aligned_cols=46  Identities=28%  Similarity=0.599  Sum_probs=39.4

Q ss_pred             ccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCC
Q 010258          459 CYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICK  506 (514)
Q Consensus       459 C~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e  506 (514)
                      |.+|--++..  ..+.+||+|+||.+|+..|.++...+||.|+.+|..
T Consensus         4 C~~C~~Pi~i--ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r   49 (101)
T 3vk6_A            4 CDKCGLPIKV--YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR   49 (101)
T ss_dssp             CTTTCSBCSE--EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred             cCccCCCeEE--EeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence            7888777655  579999999999999999998667899999998753

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=97.34  E-value=8.9e-05  Score=71.96  Aligned_cols=51  Identities=25%  Similarity=0.503  Sum_probs=39.9

Q ss_pred             ccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhc-CCCCCccccCcCCC
Q 010258          455 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEI-HRVCPLCRGDICKP  507 (514)
Q Consensus       455 e~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~-~~TCPLCRa~V~e~  507 (514)
                      ...+|.||.+-+..+  ++.-.|+|.||..|+.+|++.. +..||.|+......
T Consensus       179 ~i~~C~iC~~iv~~g--~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~  230 (238)
T 3nw0_A          179 AVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE  230 (238)
T ss_dssp             TCCBCTTTCSBCSSC--EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred             CCCcCcchhhHHhCC--cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence            467899999998876  2222399999999999999852 35899999876544

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=92.53  E-value=0.047  Score=44.93  Aligned_cols=35  Identities=11%  Similarity=0.365  Sum_probs=26.7

Q ss_pred             cccccccccccccCCeeEEeCCCCcccHHHHHH-HH
Q 010258          456 VAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDK-WL  490 (514)
Q Consensus       456 ~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdk-WL  490 (514)
                      +..|.||++.|..+....-+.|+|.||..|+.. |.
T Consensus         3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~   38 (101)
T 2jun_A            3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP   38 (101)
T ss_dssp             CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred             CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence            457999998754433344489999999999998 54

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=88.61  E-value=0.2  Score=39.85  Aligned_cols=47  Identities=28%  Similarity=0.439  Sum_probs=33.4

Q ss_pred             ccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhc---CCCCCccccCc
Q 010258          455 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEI---HRVCPLCRGDI  504 (514)
Q Consensus       455 e~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~---~~TCPLCRa~V  504 (514)
                      ....|.||.+.   ++.+.--.|...||..|+...|...   .-.||.|....
T Consensus        11 ~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~   60 (66)
T 2lri_C           11 PGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV   60 (66)
T ss_dssp             TTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred             CCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence            35679999753   3333333399999999999988753   23799997653

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=86.14  E-value=0.33  Score=55.72  Aligned_cols=55  Identities=13%  Similarity=0.159  Sum_probs=47.6

Q ss_pred             cccccccccccccccCCeeEEeCCC-CcccHHHHHHHHHhcCCCCCccccCcCCCCCCCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCH-HEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS  512 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCg-HvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~Pn  512 (514)
                      .+...|+|-++-+.++   +++|-| +.|-+.+|.+||.. +.+||+=|.++......||
T Consensus       889 P~~F~cPIs~~lM~DP---VilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN  944 (968)
T 3m62_A          889 PDEFLDPLMYTIMKDP---VILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPN  944 (968)
T ss_dssp             CGGGBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEEC
T ss_pred             cHHhCCcchhhHHhCC---eEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCccccccc
Confidence            3456799999999987   889987 68999999999996 8899999999987777776

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=86.08  E-value=0.12  Score=39.89  Aligned_cols=50  Identities=24%  Similarity=0.402  Sum_probs=35.0

Q ss_pred             cccccccccccccccCCee-EEeCCCCcccHHHHHHHHHh----cCCCCCccccC
Q 010258          454 EEVAQCYICLLEYEEGDSV-RVLPCHHEFHKTCVDKWLKE----IHRVCPLCRGD  503 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~V-rvLPCgHvFH~eCIdkWLke----~~~TCPLCRa~  503 (514)
                      ++...|+||...+.++..+ .--.|...||..|+.--...    ....||.|+..
T Consensus         4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k   58 (64)
T 1we9_A            4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK   58 (64)
T ss_dssp             SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred             CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence            4456799999998654433 33449999999998753321    25689999764

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*

Probab=83.35  E-value=0.24  Score=39.42  Aligned_cols=53  Identities=21%  Similarity=0.414  Sum_probs=35.3

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHh---cCCCCCccccCcCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKE---IHRVCPLCRGDICK  506 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke---~~~TCPLCRa~V~e  506 (514)
                      .+...|.||.........+.--.|.-.||..|+..-+..   ..-.||.|+..+..
T Consensus        16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k   71 (75)
T 2k16_A           16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK   71 (75)
T ss_dssp             CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred             CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence            345569999887542223333339999999999865542   24579999876643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	514
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	1e-16
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	4e-13
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	2e-12
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	3e-11
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	5e-11
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	8e-11
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	3e-10
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	5e-10
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	3e-08
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	6e-07
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	1e-06
d1wima_	94	g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016	9e-06
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	7e-05
d1f62a_	51	g.50.1.2 (A:) Williams-Beuren syndrome transcripti	0.004

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 71.8 bits (176), Expect = 1e-16
 Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 454 EEVAQCYICLLEYEEGDSVRVLP-CHHEFHKTCVDKWLKEIHRVCPLCRGDI 504
           ++  +C +CL E E+G+  R LP C H FH  CVD WL   H  CPLCR  +
Sbjct: 3   DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV 53

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (151), Expect = 4e-13
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 453 NEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS 512
                 C IC    ++   V++ PC H    +C+  W +   + CP CR +I   + +  
Sbjct: 20  GSTFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIVV 76

Query: 513 EN 514
           + 
Sbjct: 77  DP 78

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 60.0 bits (145), Expect = 2e-12
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 458 QCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDI 504
           +C ICL +         LPC H F   C+ +W+++ +  CPLC+  +
Sbjct: 7   RCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPV 50

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (135), Expect = 3e-11
 Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 458 QCYICLLEYEEGDSV-RVLPCHHEFHKTCVDKWLKEIHRVCPLCR 501
           +C +C+   E  D       C ++  + C  +   + + +CP CR
Sbjct: 2   ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACR 46

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (134), Expect = 5e-11
 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 458 QCYICLLEYEEGDSVRVL--PCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPD 508
            C  C        S++++   C H   ++CVD         CP C   + K +
Sbjct: 5   GCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (135), Expect = 8e-11
 Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 16/67 (23%)

Query: 453 NEEVAQCYICLLEYEE---------------GDSVRVLPCHHEFHKTCVDKWLKEIHRVC 497
           +  V  C IC     +                 +V    C+H FH  C+ +WLK   +VC
Sbjct: 18  DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVC 76

Query: 498 PLCRGDI 504
           PL   + 
Sbjct: 77  PLDNREW 83

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (129), Expect = 3e-10
 Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 7/54 (12%)

Query: 459 CYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS 512
           C  C  E +     ++LPC H     C++         CP+C+         P+
Sbjct: 9   CQQCQAEAKC---PKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGADTPA 55

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 52.9 bits (126), Expect = 5e-10
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 452 QNEEVAQCYICLLEYEEGD--SVRVLPCHHEFHKTCVDKWLKEI-HRVCPLCR 501
           ++E+V  C+IC  E       +          H++C+  WL    +  C +C 
Sbjct: 2   EDEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICG 54

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.6 bits (117), Expect = 3e-08
 Identities = 22/101 (21%), Positives = 31/101 (30%), Gaps = 26/101 (25%)

Query: 426 SIGSIPAPNEVVESLPVKLYTKSQKYQNEEVAQCYICL---------------LEYEEGD 470
           S GS   P +V+       YT+  K   EE   C IC+                      
Sbjct: 2   SSGSSGEPEQVIRK-----YTEELKVAPEE--DCIICMEKLAVASGYSDMTDSKALGPMV 54

Query: 471 SVRVLPCHHEFHKTCVDKWLK----EIHRVCPLCRGDICKP 507
             R+  C H FH  C+         +    CP C+    + 
Sbjct: 55  VGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (108), Expect = 6e-07
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWL--KEIHRVCPLCRGDICKPD 508
           +++ +C ICL   +E        C H F K C+ K L  K+    CPLC+ DI K  
Sbjct: 19  QKILECPICLELIKE---PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.5 bits (105), Expect = 1e-06
 Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 3/51 (5%)

Query: 458 QCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPD 508
            C IC     +        C H F + C+ + LK +   CP CR      D
Sbjct: 25  SCQICEHILAD---PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (98), Expect = 9e-06
 Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 10/69 (14%)

Query: 453 NEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLK-------EIHRVCPLCRGDIC 505
           +   + C +CL EY       +  C   F   C+ ++++       E    CP      C
Sbjct: 2   SSGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA---C 58

Query: 506 KPDSLPSEN 514
                  EN
Sbjct: 59  PKQGHLQEN 67

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 7e-05
 Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 446 TKSQKYQNEEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVC 497
           +++   + E++ +C  C       + V +  C H F   CV   +     VC
Sbjct: 12  SRAALDRLEKLLRCSRCTNILR--EPVCLGGCEHIFCSNCVSDCIGTGCPVC 61

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.4 bits (76), Expect = 0.004
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 457 AQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHR---VCPLCR 501
           A+C +C  + E+   +    C+  FH  C+   L E+      CP C+
Sbjct: 1   ARCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQ 48

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	514
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.55
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.38
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.34
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.34
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.33
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.3
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.28
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.15
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.13
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.11
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.04
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.04
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.01
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.93
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.92
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.69
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.41
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	89.11
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	86.56
d1weva_	88	PHD finger protein 22 {Mouse (Mus musculus) [TaxId	80.41

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.55  E-value=7.7e-16  Score=117.03  Aligned_cols=51  Identities=47%  Similarity=1.133  Sum_probs=45.9

Q ss_pred             cccccccccccccccCCeeEEeC-CCCcccHHHHHHHHHhcCCCCCccccCcC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLP-CHHEFHKTCVDKWLKEIHRVCPLCRGDIC  505 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLP-CgHvFH~eCIdkWLke~~~TCPLCRa~V~  505 (514)
                      +++.+|+||+++|..++.+..++ |+|.||..||.+||+. +.+||+||++|.
T Consensus         3 ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~-~~~CP~CR~~i~   54 (55)
T d1iyma_           3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred             CCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHh-CCcCCCCCCEeE
Confidence            45567999999999999988886 9999999999999996 889999999874

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.38  E-value=9.6e-14  Score=108.40  Aligned_cols=49  Identities=31%  Similarity=0.845  Sum_probs=42.4

Q ss_pred             ccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCC
Q 010258          455 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICK  506 (514)
Q Consensus       455 e~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e  506 (514)
                      ..++|+||++.|..  .++.+||+|.||..||.+||++ +.+||+||.+|..
T Consensus         4 ~~d~C~IC~~~~~~--~~~~~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~i~~   52 (68)
T d1chca_           4 VAERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred             CCCCCccCCcCccC--CcEEeCCCCcCcHHHHHHHHHh-CCcCCCCCcchHh
Confidence            35679999999865  4678999999999999999996 8899999998753

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=2.7e-13  Score=113.91  Aligned_cols=52  Identities=23%  Similarity=0.457  Sum_probs=41.3

Q ss_pred             cccccccccccccC---------------CeeEEeCCCCcccHHHHHHHHHhc----CCCCCccccCcCCC
Q 010258          456 VAQCYICLLEYEEG---------------DSVRVLPCHHEFHKTCVDKWLKEI----HRVCPLCRGDICKP  507 (514)
Q Consensus       456 ~~EC~ICLEefe~g---------------d~VrvLPCgHvFH~eCIdkWLke~----~~TCPLCRa~V~e~  507 (514)
                      +++|+||+++|..+               ..+.+++|+|.||..||..||+..    +.+||+||..+..+
T Consensus        25 ~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~   95 (114)
T d1v87a_          25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred             cccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhccC
Confidence            45799999998532               236778899999999999999852    34799999977554

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1e-13  Score=103.65  Aligned_cols=49  Identities=20%  Similarity=0.484  Sum_probs=42.0

Q ss_pred             cccccccccccCCe-eEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCC
Q 010258          458 QCYICLLEYEEGDS-VRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICK  506 (514)
Q Consensus       458 EC~ICLEefe~gd~-VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e  506 (514)
                      +|+||+++|..++. +..++|||.||..||.+|++..+..||+||+++.+
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            69999999987765 45568999999999999998656689999998864

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3.6e-13  Score=104.52  Aligned_cols=54  Identities=22%  Similarity=0.412  Sum_probs=43.3

Q ss_pred             ccccccccccccccCC--eeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCC
Q 010258          455 EVAQCYICLLEYEEGD--SVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPD  508 (514)
Q Consensus       455 e~~EC~ICLEefe~gd--~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~  508 (514)
                      ++..|+||++.+..+.  .+.+++|||.||..||.+||++.+..||+||..|...+
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~   57 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN   57 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCccccc
Confidence            3568999999865432  35667899999999999999865678999999886554

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=5.3e-13  Score=108.85  Aligned_cols=50  Identities=34%  Similarity=0.664  Sum_probs=41.9

Q ss_pred             ccccccccccccccCC---------------eeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcC
Q 010258          455 EVAQCYICLLEYEEGD---------------SVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDIC  505 (514)
Q Consensus       455 e~~EC~ICLEefe~gd---------------~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~  505 (514)
                      ..+.|+||++.+....               .+..++|+|.||..||.+||+. +.+||+||++..
T Consensus        20 ~~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~   84 (88)
T d3dplr1          20 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE   84 (88)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred             CCCcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHH-CCcCCCCCCccc
Confidence            4556999999886432               3678899999999999999996 889999999864

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=9.9e-13  Score=105.69  Aligned_cols=52  Identities=27%  Similarity=0.744  Sum_probs=44.1

Q ss_pred             cccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCC
Q 010258          456 VAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSL  510 (514)
Q Consensus       456 ~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~  510 (514)
                      ...|+||++.+..   ++++||||.||..||..||...+.+||+||..|.....+
T Consensus        23 ~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~~i   74 (79)
T d1fbva4          23 FQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPI   74 (79)
T ss_dssp             TTBCTTTSSSBCC---EECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCCCS
T ss_pred             CCCCccCCCcCCC---eEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCcee
Confidence            3569999998765   588999999999999999985467899999999776554

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=4.7e-12  Score=104.22  Aligned_cols=54  Identities=26%  Similarity=0.498  Sum_probs=45.6

Q ss_pred             ccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCCC
Q 010258          455 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLP  511 (514)
Q Consensus       455 e~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~P  511 (514)
                      +...|+||++.+.++   ++++|||.||..||.+|++.....||+||.++...+..+
T Consensus        22 ~~l~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~~   75 (86)
T d1rmda2          22 KSISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLES   75 (86)
T ss_dssp             HHTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBC
T ss_pred             cCcCCccCCcchhcc---eecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhhccC
Confidence            346799999998774   789999999999999999865678999999987666543

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.13  E-value=4.5e-12  Score=95.76  Aligned_cols=50  Identities=12%  Similarity=0.183  Sum_probs=43.2

Q ss_pred             cccccccccccCCeeEEe-CCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCCC
Q 010258          458 QCYICLLEYEEGDSVRVL-PCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLP  511 (514)
Q Consensus       458 EC~ICLEefe~gd~VrvL-PCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~P  511 (514)
                      .|+||++.++++   +.+ .|||.||.+||.+||++ +.+||+||.++...+..|
T Consensus         2 ~C~Ic~~~~~~P---v~~~~cGh~fc~~cI~~~l~~-~~~CP~c~~~l~~~dLip   52 (56)
T d2baya1           2 LCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVE   52 (56)
T ss_dssp             CCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEE
T ss_pred             CCccCCchHHhc---CccCCCCCcccHHHHHHHHhh-ccCCCccCCcCCHHhcee
Confidence            599999998875   555 59999999999999997 789999999998777654

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.1e-11  Score=102.98  Aligned_cols=55  Identities=36%  Similarity=0.656  Sum_probs=45.0

Q ss_pred             ccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcC--CCCCccccCcCCCCCCCC
Q 010258          455 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIH--RVCPLCRGDICKPDSLPS  512 (514)
Q Consensus       455 e~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~--~TCPLCRa~V~e~~s~Pn  512 (514)
                      +..+|+||++.|.++   +.++|||.||..||..|++...  ..||+||..+...+..++
T Consensus        20 ~~l~CpIC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~~n   76 (103)
T d1jm7a_          20 KILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQES   76 (103)
T ss_dssp             HHTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCC
T ss_pred             cCcCCCccCchhCCe---EEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhCCcC
Confidence            346799999999875   5689999999999999998522  479999999977665554

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.04  E-value=3.5e-11  Score=95.83  Aligned_cols=56  Identities=13%  Similarity=0.265  Sum_probs=48.1

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCCCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS  512 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~Pn  512 (514)
                      .+...|+||++.|.++   ++++|||.|+..||.+||.+.+..||+|+..+...+..||
T Consensus         5 P~~l~CpIc~~l~~dP---v~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~pN   60 (80)
T d2c2la2           5 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPN   60 (80)
T ss_dssp             CSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEEC
T ss_pred             CccccCcCcCchhhhh---cccCCcCeecHHHHHHHHhcCCccCCCccccccccccccH
Confidence            4567899999999886   6899999999999999998656789999999877666654

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.4e-11  Score=93.80  Aligned_cols=51  Identities=24%  Similarity=0.585  Sum_probs=43.1

Q ss_pred             ccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCCCC
Q 010258          455 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS  512 (514)
Q Consensus       455 e~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~Pn  512 (514)
                      +..+|+||++.|.++   +++||||.||..||.+|    +..||+||+++......|+
T Consensus         5 ~~l~C~IC~~~~~~p---~~lpCgH~fC~~Ci~~~----~~~CP~Cr~~~~~~~~~~a   55 (56)
T d1bora_           5 QFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGADTPA   55 (56)
T ss_dssp             CCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCCSSCCC
T ss_pred             CCCCCcccCcccCCC---EEecCCCHHhHHHHHcC----CCcCcCCCCcccCCCCCCC
Confidence            345899999999875   67899999999999875    4689999999988777665

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.01  E-value=6e-11  Score=93.88  Aligned_cols=56  Identities=20%  Similarity=0.488  Sum_probs=48.3

Q ss_pred             cccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCCCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS  512 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~Pn  512 (514)
                      .+...|+||++.|.++   ++++|||.||+.||.+|++.....||.|+..+...+..||
T Consensus         6 P~~l~CpIc~~~m~dP---V~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~pN   61 (78)
T d1t1ha_           6 PEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPN   61 (78)
T ss_dssp             SSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEEC
T ss_pred             CccCCCcCcCchhhCc---eEccCCCcchHHHHHHHHHHCCCCCCcccccCCcccccch
Confidence            3567899999999886   6789999999999999998646689999999988777665

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=5.6e-11  Score=97.65  Aligned_cols=53  Identities=25%  Similarity=0.457  Sum_probs=43.7

Q ss_pred             ccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhcCCCCCccccCcCCCCCCCC
Q 010258          455 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS  512 (514)
Q Consensus       455 e~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~Pn  512 (514)
                      +..+|+||++.|.++  +...+|||.||..||..|+..   .||+||..+...+..++
T Consensus        21 ~~l~C~IC~~~~~~p--v~~~~CgH~fC~~Ci~~~~~~---~CP~Cr~~~~~~~l~~n   73 (97)
T d1jm7b_          21 KLLRCSRCTNILREP--VCLGGCEHIFCSNCVSDCIGT---GCPVCYTPAWIQDLKIN   73 (97)
T ss_dssp             HTTSCSSSCSCCSSC--BCCCSSSCCBCTTTGGGGTTT---BCSSSCCBCSCSSCCCC
T ss_pred             hcCCCccCCchhhcC--ceeCCCCCchhHHHHHHHHhc---cccccCCcCchhhCccc
Confidence            356799999999875  444589999999999999963   59999999887776665

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.92  E-value=2.2e-10  Score=86.88  Aligned_cols=49  Identities=27%  Similarity=0.615  Sum_probs=38.8

Q ss_pred             cccccccccccccccCCeeEEeC-----CCCcccHHHHHHHHHh-cCCCCCccccCcC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLP-----CHHEFHKTCVDKWLKE-IHRVCPLCRGDIC  505 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLP-----CgHvFH~eCIdkWLke-~~~TCPLCRa~V~  505 (514)
                      ++...|.||++++...   ...|     |+|.||..||.+|+.. .+.+||+||+++.
T Consensus         4 ed~~~C~IC~~~~~~~---~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           4 EDVPVCWICNEELGNE---RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCC---CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCccCCccCCCc---eeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            5667899999988654   2334     4699999999999974 4568999999874

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=3.9e-09  Score=87.62  Aligned_cols=55  Identities=15%  Similarity=0.128  Sum_probs=47.7

Q ss_pred             cccccccccccccccCCeeEEeCCC-CcccHHHHHHHHHhcCCCCCccccCcCCCCCCCC
Q 010258          454 EEVAQCYICLLEYEEGDSVRVLPCH-HEFHKTCVDKWLKEIHRVCPLCRGDICKPDSLPS  512 (514)
Q Consensus       454 ee~~EC~ICLEefe~gd~VrvLPCg-HvFH~eCIdkWLke~~~TCPLCRa~V~e~~s~Pn  512 (514)
                      .+...|+||++.|.++   ++++|+ |.|++.||..||++ +.+||+|+.++...+..||
T Consensus        20 P~~f~CPI~~~lm~dP---V~~~~~~~ty~r~~I~~~l~~-~~~~P~~~~~l~~~~L~pN   75 (98)
T d1wgma_          20 CDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPN   75 (98)
T ss_dssp             CTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEEC
T ss_pred             cHHhCCcCchhHHHHH---HhcccccchhhHHHHHHHHHh-cCCcccccccccchhhcch
Confidence            3568899999999996   788865 58999999999996 7899999999988877765

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=4.5e-08  Score=78.98  Aligned_cols=47  Identities=21%  Similarity=0.548  Sum_probs=37.7

Q ss_pred             ccccccccccccccCCeeEEeCCCCcccHHHHHHHHHhc-------CCCCCccc
Q 010258          455 EVAQCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEI-------HRVCPLCR  501 (514)
Q Consensus       455 e~~EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~-------~~TCPLCR  501 (514)
                      ...+|+||++++...+.+..++|+|.||..||..|++..       .-.||.|.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~   57 (94)
T d1wima_           4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA   57 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTT
T ss_pred             CCCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCC
Confidence            356799999999877667777899999999999999731       12599864

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.11  E-value=0.049  Score=38.76  Aligned_cols=45  Identities=27%  Similarity=0.634  Sum_probs=31.0

Q ss_pred             cccccccccccCCeeEEeCCCCcccHHHHHHHHHhc---CCCCCcccc
Q 010258          458 QCYICLLEYEEGDSVRVLPCHHEFHKTCVDKWLKEI---HRVCPLCRG  502 (514)
Q Consensus       458 EC~ICLEefe~gd~VrvLPCgHvFH~eCIdkWLke~---~~TCPLCRa  502 (514)
                      .|.||...-..+..+.--.|...||..|+..-+...   .-.||.|+.
T Consensus         2 ~C~vC~~~~~~~~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~   49 (51)
T d1f62a_           2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCcCcCCCCCCCCEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence            589997764443333333399999999999877632   236999974

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.56  E-value=0.066  Score=39.65  Aligned_cols=49  Identities=24%  Similarity=0.431  Sum_probs=34.5

Q ss_pred             ccccccccccccccCCeeEEe-CCCCcccHHHHHHHHH---h-cCCCCCccccC
Q 010258          455 EVAQCYICLLEYEEGDSVRVL-PCHHEFHKTCVDKWLK---E-IHRVCPLCRGD  503 (514)
Q Consensus       455 e~~EC~ICLEefe~gd~VrvL-PCgHvFH~eCIdkWLk---e-~~~TCPLCRa~  503 (514)
                      ....|.||...+..++.++.- .|+..||..|+..=..   . ....||.|+..
T Consensus         5 ~~~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~~   58 (64)
T d1we9a_           5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK   58 (64)
T ss_dssp             SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred             CCCcCcCcCCCCCCCCCEEEcCCCCccCCcccCCcChHHCCCCCeEECcCCcCc
Confidence            345799999988776654433 3999999999963221   1 24689999753

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.41  E-value=0.071  Score=41.65  Aligned_cols=50  Identities=16%  Similarity=0.432  Sum_probs=31.7

Q ss_pred             ccccccccccccccCC-eeEEe-CCCCcccHHHHHHHHH----h---cCCCCCccccCc
Q 010258          455 EVAQCYICLLEYEEGD-SVRVL-PCHHEFHKTCVDKWLK----E---IHRVCPLCRGDI  504 (514)
Q Consensus       455 e~~EC~ICLEefe~gd-~VrvL-PCgHvFH~eCIdkWLk----e---~~~TCPLCRa~V  504 (514)
                      ....|.||........ .++.- -|...||..|+...+.    .   ..-.||.|....
T Consensus        15 ~~~~C~iC~~~~~~~~~~~v~Cd~C~~~~H~~C~~p~~~~~~~~~~~~~W~C~~C~~~~   73 (88)
T d1weva_          15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM   73 (88)
T ss_dssp             HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred             CcCCccCCCCccCCCCCeEEEcCCCCCccccccCCCcccccccccCCCeEECcccCchH
Confidence            3556999987544322 23322 2999999999875432    1   134799997543