Citrus Sinensis ID: 010264

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510----
Protein Sequence
MDANAKKKAVNSGEISISEKKISNGSEVVIKIASEESPSVSTEKVTNGFESNSVPPVSCPSPEPEGARFTRSHTKPPKIPTTNDAVLIRRRSLARSVYSKPKSRFGEPSYNDPNMIVEDDDSALSEQLGGNSLSRTSCNTSKRSISSSRTNSIATKMSSIASDDEEEIYNKVELIKEKRKRMTPMDLIQWVAFLCNVGCLIVSLTVNKWENFMIWGLEIWKWCVLVLVIFCGMLVTNWFMHVIVFVIETNFLLRKKVLYFVHGLKKSVQVFIWLALVLVTWVLLFNHGVKRSEVATKVLHYITWTLVTFLIGAFLWLLKTLSLKILASNFHVNRFFDRIQESVFHQYVLQTLSGPPLIEEDERVGRAPSFGQLSIRSNKKGKEAKETKIIDMGKVHKMKQEKVSTWTMKLLVDAIMNSRLSTISNTLDESVNEGEHADMEITNEMELLVEEMNILTTIFLKLDNEKISYPNSVLATKSISNYNRSPDMGDTVEFSIAFVTPVERIAMLKEKIKQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHEEEEcccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHccccccccccccccccccccccccccccHHHHHccccccccHHHHHHHHHHHHccccccccccccccccccccccEEEccccHHHHHHHHHHHHHEEcccccEEEEEccHHHccccccEEccccccccEEEEEEccccHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccHcccccccEEEEEEEccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccHHHcccEEHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccccccccEEccccccccccccccEEEHHHHHHcccccccHHHHHHHHHHHHHcccccccHHHHccccccccccEEEccHHHHHHHHHHHHHHHHHcccccEEEEccHHHHcccHHHHHcccccccccHHccccccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mdanakkkavnsgeisisekkisngSEVVIKIAseespsvstekvtngfesnsvppvscpspepegarftrshtkppkipttndaVLIRRRSLARsvyskpksrfgepsyndpnmivedddsalseqlggnslsrtscntskrsisssrtNSIATKmssiasddeeEIYNKVELIKEKRKRMTPMDLIQWVAFLCNVGCLIVSLTVNKWENFMIWGLEIWKWCVLVLVIFCGMLVTNWFMHVIVFVIETNFLLRKKVLYFVHGLKKSVQVFIWLALVLVTWVLLFNHGVKRSEVATKVLHYITWTLVTFLIGAFLWLLKTLSLKILASNFHVNRFFDRIQESVFHQYVLQtlsgpplieedervgrapsfgqlsirsnkkgkeaketkiidmgkvhkmkQEKVSTWTMKLLVDAIMNSRLSTISntldesvnegehadMEITNEMELLVEEMNILTTIFLKLdnekisypnsvlatksisnynrspdmgdtvEFSIAFVTPVERIAMLKEKIKQ
Flexible Loop (DISEMBL)
mdanakkkavnsgeisisekkisngsEVVIKIaseespsvstekvtngfesnsvppvscpspEPEGArftrshtkppkipttndavliRRRSLarsvyskpksrfgepsyndpNMIVEDDDSALSEQLggnslsrtscntskrsisssrtnsiatkmssiasddeeeiYNKVELIKEKRKRMTPMDLIQWVAFLCNVGCLIVSLTVNKWENFMIWGLEIWKWCVLVLVIFCGMLVTNWFMHVIVFVIETNFLLRKKVLYFVHGLKKSVQVFIWLALVLVTWVLLFNHGVKRSEVATKVLHYITWTLVTFLIGAFLWLLKTLSLKILASNFHVNRFFDRIQESVFHQYVLQTLSGPPLIEEDERVgrapsfgqlsirsnkkgkeaketkiidmgkvhkmkqekVSTWTMKLLVDAIMNSRLSTISNTLDESVNEGEHADMEITNEMELLVEEMNILTTIFLKLDNEKISYPNSVLATKSISNYNRSPDMGDTVEFSIAFVTPVERIAMLKEKIKQ
Low Complexity Region (SEG)
MDANAKKKAVnsgeisisekkisngseVVIKIASEESPSVSTEKVTNGFesnsvppvscpspepeGARFTRSHTKPPKIPTTNDAVLIRRRSLARSVYSKPKSRFGEPSYNDPNMIVEDDDSALSEQLGGNSLSRTscntskrsisssrtnsiATKMSSIASDDEEEIYNKVELIKEKRKRMTPMDLIQWVAFLCNVGCLIVSLTVNKWENFMIWGLEIWKWCVLVLVIFCGMLVTNWFMHVIVFVIETNFLLRKKVLYFVHGLKKSVQVFIwlalvlvtwvllFNHGVKRSEVATKVLHYITWTLVTFLIGAFlwllktlslkilASNFHVNRFFDRIQESVFHQYVLQTLSGPPLIEEDERVGRAPSFGQLSIRSNKKGKEAKETKIIDMGKVHKMKQEKVSTWTMKLLVDAIMNSRLSTISNTLDESVNEGEHADMEITNEMELLVEEMNILTTIFLKLDNEKISYPNSVLATKSISNYNRSPDMGDTVEFSIAFVTPVERIAMLKEKIKQ
Disordered region (IsUnstruct)
************************************************************************************************************************************************************************YNKVELIKEKRKRMTPMDLIQWVAFLCNVGCLIVSLTVNKWENFMIWGLEIWKWCVLVLVIFCGMLVTNWFMHVIVFVIETNFLLRKKVLYFVHGLKKSVQVFIWLALVLVTWVLLFNHGVKRSEVATKVLHYITWTLVTFLIGAFLWLLKTLSLKILASNFHVNRFFDRIQESVFHQYVLQTLSG**********************************************EKVSTWTMKLLVDAIMNSRLSTI****************EITNEMELLVEEMNILTTIFLKLDNEKISYPNSVLATKSISNYN****MGDTVEFSIAFVTPVERIAML******
Disordered Region (DISOPRED)
**********************************************************************************************************************************************************************EIYNKVELIKEKRKRMTPMDLIQWVAFLCNVGCLIVSLTVNKWENFMIWGLEIWKWCVLVLVIFCGMLVTNWFMHVIVFVIETNFLLRKKVLYFVHGLKKSVQVFIWLALVLVTWVLLFNHGVKRSEVATKVLHYITWTLVTFLIGAFLWLLKTLSLKILASNFHVNRFFDRIQESVFHQYVLQTLSGP**************************************************WTMKLLVDAIMNSRLSTISNTLDESVNEGEHADMEITNEMELLVEEMNILTTIFLKLDNEKISYPNSVLATKSISNYNRSPDMGDTVEFSIAFVTPVERIAMLKEKI**
Disordered Region (DISEMBL)
**************ISISEKKISNGSEVVIKIASEE************************************HTKPPKIPTTNDAVLIRRRSLARSVYSKPKSRFGEPSYNDPNMIVEDDDSALSEQ**************************ATKMSSIASDDEEEIYNKVELIKEKRKRMTPMDLIQWVAFLCNVGCLIVSLTVNKWENFMIWGLEIWKWCVLVLVIFCGMLVTNWFMHVIVFVIETNFLLRKKVLYFVHGLKKSVQVFIWLALVLVTWVLLFNHGVKRSEVATKVLHYITWTLVTFLIGAFLWLLKTLSLKILASNFHVNRFFDRIQESVFHQYVLQTLSGPPLIEEDERVGRAPSFGQLSIRSNKKGKEAKETKIIDMGKVHKMKQEKVSTWTMKLLVDAIMNSRLSTISNTLDESVNEGEHADMEITNEMELLVEEMNILTTIFLKLDNEKISYPNSVLATKSISNYNRSPDMGDTVEFSIAFVTPVERIAMLKEKIKQ
Disordered Region (DISPRO)
************GEISISEKKISNGSEVVIKIA***********************************************************************************************************************************EEEIYNKVELIKEKRKRMTPMDLIQWVAFLCNVGCLIVSLTVNKWENFMIWGLEIWKWCVLVLVIFCGMLVTNWFMHVIVFVIETNFLLRKKVLYFVHGLKKSVQVFIWLALVLVTWVLLFNHGVKRSEVATKVLHYITWTLVTFLIGAFLWLLKTLSLKILASNFHVNRFFDRIQESVFHQYVLQTLSGPPLIEEDERV**********************TKIIDMGKVHKMKQEKVSTWTMKLLVDAIMNSRLSTISNTLDESVNEGEHADMEITNEMELLVEEMNILTTIFLKLDNEKISYPNSVLATKSISNYNRSPDMGDTVEFSIAFVTPVERIAMLKEKIK*
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDANAKKKAVNSGEISISEKKISNGSEVVIKIASEESPSVSTEKVTNGFESNSVPPVSCPSPEPEGARFTRSHTKPPKIPTTNDAVLIRRRSLARSVYSKPKSRFGEPSYNDPNMIVEDDDSALSEQLGGNSLSRTSCNTSKRSISSSRTNSIATKMSSIASDDEEEIYNKVELIKEKRKRMTPMDLIQWVAFLCNVGCLIVSLTVNKWENFMIWGLEIWKWCVLVLVIFCGMLVTNWFMHVIVFVIETNFLLRKKVLYFVHGLKKSVQVFIWLALVLVTWVLLFNHGVKRSEVATKVLHYITWTLVTFLIGAFLWLLKTLSLKILASNFHVNRFFDRIQESVFHQYVLQTLSGPPLIEEDERVGRAPSFGQLSIRSNKKGKEAKETKIIDMGKVHKMKQEKVSTWTMKLLVDAIMNSRLSTISNTLDESVNEGEHADMEITNEMELLVEEMNILTTIFLKLDNEKISYPNSVLATKSISNYNRSPDMGDTVEFSIAFVTPVERIAMLKEKIKQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	514	2.2.26 [Sep-21-2011]
Q9LYG9	734	Mechanosensitive ion chan	yes	no	0.844	0.591	0.551	1e-125
Q84M97	742	Mechanosensitive ion chan	no	no	0.842	0.583	0.506	1e-120
F4IME2	908	Mechanosensitive ion chan	no	no	0.529	0.299	0.372	2e-56
F4IME1	849	Mechanosensitive ion chan	no	no	0.505	0.306	0.386	2e-52
Q9LH74	881	Mechanosensitive ion chan	no	no	0.507	0.296	0.361	2e-52
Q9SYM1	856	Mechanosensitive ion chan	no	no	0.603	0.362	0.340	8e-51
Q9LPG3	881	Mechanosensitive ion chan	no	no	0.527	0.307	0.347	2e-50

>sp|Q9LYG9|MSL10_ARATH Mechanosensitive ion channel protein 10 OS=Arabidopsis thaliana GN=MSL10 PE=1 SV=1

 Score =  449 bits (1155), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 248/450 (55%), Positives = 312/450 (69%), Gaps = 16/450 (3%)

Query: 17  ISEKKISNGS----EVVIKIASEESPSVSTEKVTNGFESNSVPPVSCPSPEPEGARFTRS 72
           ++E+K SNG     +VVI +  EE+   S E  +   ES    P S  SP PE ++   S
Sbjct: 1   MAEQKSSNGGGGGGDVVINVPVEEASRRSKEMASP--ESEKGVPFS-KSPSPEISKLVGS 57

Query: 73  HTKPPKIPTTNDAVLIRRRSLARSVYSKPKSRFGEPSYNDPNMIVEDDDSALSEQLG-GN 131
             KPP+ P  N+  L +R+S ARSVYSKPKSRF +PS      I+E++   + EQLG G 
Sbjct: 58  PNKPPRAPNQNNVGLTQRKSFARSVYSKPKSRFVDPSCPVDTSILEEE---VREQLGAGF 114

Query: 132 SLSRTSCNT-SKRSISSSRTNSIATKMSSIASDDEEEIYNKVELIKEKRKRMTPMDLIQW 190
           S SR S N  S RS+ S     +      +  D++EEIY KV+L +E R +++ + LI+ 
Sbjct: 115 SFSRASPNNKSNRSVGSPA--PVTPSKVVVEKDEDEEIYKKVKLNREMRSKISTLALIES 172

Query: 191 VAFLCNVGCLIVSLTVNKWENFMIWGLEIWKWCVLVLVIFCGMLVTNWFMHVIVFVIETN 250
             F+  +  L+ SLT+N  ++   WGLE+WKWCVLV+VIF GMLVTNWFM +IVF+IETN
Sbjct: 173 AFFVVILSALVASLTINVLKHHTFWGLEVWKWCVLVMVIFSGMLVTNWFMRLIVFLIETN 232

Query: 251 FLLRKKVLYFVHGLKKSVQVFIWLALVLVTWVLLFNHGVKRSEVATKVLHYITWTLVTFL 310
           FLLR+KVLYFVHGLKKSVQVFIWL L+LV W+LLFNH VKRS  ATKVL  IT TL++ L
Sbjct: 233 FLLRRKVLYFVHGLKKSVQVFIWLCLILVAWILLFNHDVKRSPAATKVLKCITRTLISIL 292

Query: 311 IGAFLWLLKTLSLKILASNFHVNRFFDRIQESVFHQYVLQTLSGPPLIEEDERVGRAPSF 370
            GAF WL+KTL LKILA+NF+VN FFDRIQ+SVFHQYVLQTLSG PL+EE ERVGR PS 
Sbjct: 293 TGAFFWLVKTLLLKILAANFNVNNFFDRIQDSVFHQYVLQTLSGLPLMEEAERVGREPST 352

Query: 371 GQLSIRSNKKGKEAKETKIIDMGKVHKMKQEKVSTWTMKLLVDAIMNSRLSTISNTLDES 430
           G LS  +  K    KE K+IDMGKVHKMK+EKVS WTM++L++A+  S LSTIS+TLDE+
Sbjct: 353 GHLSFATVVKKGTVKEKKVIDMGKVHKMKREKVSAWTMRVLMEAVRTSGLSTISDTLDET 412

Query: 431 V-NEG-EHADMEITNEMELLVEEMNILTTI 458
              EG E AD EIT+EME L    ++   +
Sbjct: 413 AYGEGKEQADREITSEMEALAAAYHVFRNV 442

Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer.
Arabidopsis thaliana (taxid: 3702)

>sp|Q84M97|MSL9_ARATH Mechanosensitive ion channel protein 9 OS=Arabidopsis thaliana GN=MSL9 PE=2 SV=1

 Score =  431 bits (1109), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 233/460 (50%), Positives = 312/460 (67%), Gaps = 27/460 (5%)

Query: 17  ISEKKISNGSEVVIKIASEE-------SPS---VSTEKVTNGFE-SNSVPPVSCPSPEPE 65
           ++E+++SNG EVVI ++ +E       SPS   +++     G E S  VPP+S P+PE  
Sbjct: 1   MAERRVSNGEEVVINVSDKEDSKDPRASPSFNPLASPDSDAGIEKSKPVPPISIPTPEI- 59

Query: 66  GARFTRSHTKPPKIPTTNDAVLIRRRSLARSVYSKPKSRFGEP-SYNDPNMIVEDDDSAL 124
             +F+ S  KPPKIP+     L+RR+SL+RS+YSKPKSRFGE  S+   +   E+   +L
Sbjct: 60  -YKFSGSVHKPPKIPSPEG--LVRRKSLSRSIYSKPKSRFGEQQSFRYDSTREENGGRSL 116

Query: 125 SEQLGGNSLSRTSC------NTSKRSISSSRTNSIATKMSSIASDDEEEIYNKVELIKEK 178
            EQ G  S +R S       N S RS++S+  + +A +          EIY KV+L + K
Sbjct: 117 REQFGAGSFARGSFDRASPNNKSNRSVASAALSKVAEEEPDENE----EIYKKVKLHRVK 172

Query: 179 RKRMTPMDLIQWVAFLCNVGCLIVSLTVNKWENFMIWGLEIWKWCVLVLVIFCGMLVTNW 238
           R  M P+  ++ V F+  +G LIVSLT++      IWGLE WKWCVLV+V   GMLVTNW
Sbjct: 173 RSGMKPLAFLELVVFMAILGALIVSLTIDVVNKHTIWGLEFWKWCVLVMVTLSGMLVTNW 232

Query: 239 FMHVIVFVIETNFLLRKKVLYFVHGLKKSVQVFIWLALVLVTWVLLFNHGVKRSEVATKV 298
           FMH +VF+IE N+LLRKKVLYFVHGLKK+VQVFIW +LVL+ W+ LF+  VKR+    + 
Sbjct: 233 FMHFVVFIIEKNYLLRKKVLYFVHGLKKNVQVFIWFSLVLIAWICLFDGDVKRTRKTKRF 292

Query: 299 LHYITWTLVTFLIGAFLWLLKTLSLKILASNFHVNRFFDRIQESVFHQYVLQTLSGPPLI 358
           L +ITWT+V+ L+G+ L+L+KT +LK+LAS F+V  FF+RIQESVFHQYVLQTLSGPPLI
Sbjct: 293 LDFITWTIVSLLVGSILFLVKTFALKVLASKFNVRNFFERIQESVFHQYVLQTLSGPPLI 352

Query: 359 EEDERVGRAPSFGQLSIRSNKKGKEAKETKIIDMGKVHKMKQEKVSTWTMKLLVDAIMNS 418
           EE E VGR PS G LS  +  K  + K+ K+IDMGKVH+MKQEKVS WTM++L++A+  S
Sbjct: 353 EEAENVGRVPSTGHLSF-TRTKDGKVKDKKVIDMGKVHRMKQEKVSAWTMRVLIEAVGTS 411

Query: 419 RLSTISNTLDESVNEGEHADMEITNEMELLVEEMNILTTI 458
            +STIS+TLDE  N+ E  D EITNEME +    ++   +
Sbjct: 412 GISTISSTLDEVNNKKERTDKEITNEMEAVAAAYDVFNNV 451

Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer.

Arabidopsis thaliana (taxid: 3702)

>sp|F4IME2|MSL8_ARATH Mechanosensitive ion channel protein 8 OS=Arabidopsis thaliana GN=MSL8 PE=2 SV=2

 Score =  220 bits (561), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 113/303 (37%), Positives = 178/303 (58%), Gaps = 31/303 (10%)

Query: 163 DDEEEIYNKVELIKE-KRKRMTPMDLIQWVAFLCNVGCLIVSLTVNKWENFMIWGLEIWK 221
           D+E++   + ++  E KR ++  + L+QW++ +  +  L  SL++  W+   +W L +WK
Sbjct: 276 DEEDDPLAEEDVPDEYKRGKLDAITLLQWLSLVAIIAALACSLSIQSWKKVRVWNLHLWK 335

Query: 222 WCVLVLVIFCGMLVTNWFMHVIVFVIETNFLLRKKVLYFVHGLKKSVQVFIWLALVLVTW 281
           W V +LV+ CG LV+ W + ++VF IE NFLLRK+VLYFV+G++++VQ  +WL LVL+ W
Sbjct: 336 WEVFLLVLICGRLVSGWGIRIVVFFIERNFLLRKRVLYFVYGVRRAVQNCLWLGLVLLAW 395

Query: 282 VLLFNHGVKRSEVATKVLHYITWTLVTFLIGAFLWLLKTLSLKILASNFHVNRFFDRIQE 341
             LF+  V+R E  ++ L Y+T  LV FL+   LWL+KTL +K+LAS+FHV+ +FDRIQE
Sbjct: 396 HFLFDKKVQR-ETRSRFLPYVTKILVCFLLSTILWLIKTLVVKVLASSFHVSTYFDRIQE 454

Query: 342 SVFHQYVLQTLSGPPLIE-----------EDE-------RVGRAPSFGQLSIRSNKKGK- 382
           ++F+QYV++TLSGPP+IE           +DE            P     +    K G+ 
Sbjct: 455 ALFNQYVIETLSGPPMIEMSRIEEEEERAQDEIFKMQNAGANLPPDLCAAAFPPGKSGRV 514

Query: 383 ----------EAKETKIIDMGKVHKMKQEKVSTWTMKLLVDAIMNSRLSTISNTLDESVN 432
                     ++     I M  +H+M  + +S W MK L+  + N  L+T+   + ES  
Sbjct: 515 MNPKLSPIIPKSTTDNGISMEHLHRMNHKNISAWNMKRLMKIVRNVSLTTLDEQMLESTY 574

Query: 433 EGE 435
           E E
Sbjct: 575 EDE 577

Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer.

Arabidopsis thaliana (taxid: 3702)

>sp|F4IME1|MSL7_ARATH Mechanosensitive ion channel protein 7 OS=Arabidopsis thaliana GN=MSL7 PE=3 SV=1

 Score =  207 bits (526), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 112/290 (38%), Positives = 171/290 (58%), Gaps = 30/290 (10%)

Query: 175 IKEKRKRMTPMDLIQWVAFLCNVGCLIVSLTVNKWENFMIWGLEIWKWCVLVLVIFCGML 234
           ++ ++ +M  + L+QW++ +  V  L++SL ++ W N  +W L +WKW V++LV+ CG L
Sbjct: 222 VEYRKLKMDAITLLQWMSLIALVVALVLSLGLHTWRNATLWSLHLWKWEVVLLVLICGRL 281

Query: 235 VTNWFMHVIVFVIETNFLLRKKVLYFVHGLKKSVQVFIWLALVLVTWVLLFNHGVKRSEV 294
           V+   + +IVF IE NFLLRK+VLYFV+G+K +VQ  +WL LVL+ W  LF+  V++ E 
Sbjct: 282 VSGCGIRIIVFFIERNFLLRKRVLYFVYGVKTAVQNCLWLGLVLLAWHFLFDKKVEK-ET 340

Query: 295 ATKVLHYITWTLVTFLIGAFLWLLKTLSLKILASNFHVNRFFDRIQESVFHQYVLQTLSG 354
            + VL  ++  LV FL+   LWL+KTL +K+LAS+FHV+ +FDRIQE++FH Y+++TLSG
Sbjct: 341 QSDVLLLMSKILVCFLLSTVLWLIKTLVVKVLASSFHVSTYFDRIQEALFHHYLIETLSG 400

Query: 355 PPLI------EEDERV---------GRA---PSFGQLSIRSNKKGK-----------EAK 385
           PP++      EE++R          G A   P     +    K G            +  
Sbjct: 401 PPMLELSRIEEEEDRTQDEIYKMQKGGADLSPELCSAAFPQEKSGSTMNMKFSPIIPKTG 460

Query: 386 ETKIIDMGKVHKMKQEKVSTWTMKLLVDAIMNSRLSTISNTLDESVNEGE 435
               I M  +HKM Q+ VS W MK L+  + N  LST+     ++  E E
Sbjct: 461 SDNGITMDDLHKMNQKNVSAWNMKRLMKIVRNVSLSTLDEQALQNTCEDE 510

Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LH74|MSL5_ARATH Mechanosensitive ion channel protein 5 OS=Arabidopsis thaliana GN=MSL5 PE=2 SV=1

 Score =  207 bits (526), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 110/304 (36%), Positives = 180/304 (59%), Gaps = 43/304 (14%)

Query: 178 KRKRMTPMDLIQWVAFLCNVGCLIVSLTVNKWENFMIWGLEIWKWCVLVLVIFCGMLVTN 237
           KR +++    ++W++ +  V  L+ SLT++  +    W L++WKW V VLV+ CG LV++
Sbjct: 261 KRDKLSFWVFLEWISLVLIVTSLVCSLTIHNLQRKTWWKLDLWKWEVTVLVLICGRLVSS 320

Query: 238 WFMHVIVFVIETNFLLRKKVLYFVHGLKKSVQVFIWLALVLVTWVLLFNHGVKRSEVATK 297
           W + +IVF++E NF  RK+VLYFV+G++KSVQ  +WL LVL+ W  LF+  V+R E  + 
Sbjct: 321 WIVRIIVFLVEKNFTWRKRVLYFVYGVRKSVQNCLWLGLVLLAWHFLFDKKVER-ETRST 379

Query: 298 VLHYITWTLVTFLIGAFLWLLKTLSLKILASNFHVNRFFDRIQESVFHQYVLQTLSGPPL 357
            L Y+T  LV  L+   +WL+KT+ +K+LAS+FH++ +FDRIQES+F QYV++TLSGPPL
Sbjct: 380 ALRYVTRVLVCLLVALIIWLVKTILVKVLASSFHMSTYFDRIQESLFTQYVIETLSGPPL 439

Query: 358 IE----EDE-------------------------------RVGRAPSFGQLSIRSNKKGK 382
           +E    E+E                               +VG++P   ++    +K+G+
Sbjct: 440 MEIQRMEEEEQQVAEDVKSLEKLAGAKLPPALKATVKSFMKVGKSPGLNRI---GSKRGE 496

Query: 383 EAKETKIIDMGKVHKMKQEKVSTWTMKLLVDAIMNSRLSTISNTLDESVNEGEHADMEIT 442
           + +  +I    ++ +M  + VS W MK L++ I+   +ST+   + ++  E E A   I 
Sbjct: 497 DGEGIRI---DQLKRMNTKNVSAWNMKRLMNIILKGAISTLDQNMQDTTQEDEDA-THIR 552

Query: 443 NEME 446
           +E E
Sbjct: 553 SEYE 556

Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYM1|MSL6_ARATH Mechanosensitive ion channel protein 6 OS=Arabidopsis thaliana GN=MSL6 PE=1 SV=1

 Score =  201 bits (512), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 117/344 (34%), Positives = 192/344 (55%), Gaps = 34/344 (9%)

Query: 161 ASDDEEEIYNKVELIKEKRK-RMTPMDLIQWVAFLCNVGCLIVSLTVNKWENFMIWGLEI 219
             ++E++ +   +L +E RK +++   +++W++ +  +   + +L +       +W L++
Sbjct: 216 GEEEEDDPFAAEDLPEEYRKDKLSLWIVLEWLSLILIIAGFVCTLAIPSLRKKKLWELQL 275

Query: 220 WKWCVLVLVIFCGMLVTNWFMHVIVFVIETNFLLRKKVLYFVHGLKKSVQVFIWLALVLV 279
           WKW  +VLV+ CG LV++W + ++VF IE NFLLRK+VLYFV+G++K+VQ  +WL LVL+
Sbjct: 276 WKWESMVLVLICGRLVSSWIVKIVVFFIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLL 335

Query: 280 TWVLLFNHGVKRSEVATKVLHYITWTLVTFLIGAFLWLLKTLSLKILASNFHVNRFFDRI 339
            W  LF+  V ++   TK L  +T   V  L+G  LWL+KTL +K+LAS+FH++ +FDRI
Sbjct: 336 AWHFLFDEKVAKA-ANTKALRVVTKIFVCLLVGFLLWLVKTLLVKVLASSFHMSTYFDRI 394

Query: 340 QESVFHQYVLQTLSGPPLIEEDE----------RVGRAPSFGQLSIRSN------KKGKE 383
           QES+F QYV++TLSGPPLIE  +           V +  + G + I+S       K GK 
Sbjct: 395 QESLFTQYVIETLSGPPLIEIQKNEEEEERISVEVKKFQNPGGVEIQSGAQKSPMKTGKS 454

Query: 384 -------------AKETKIIDMGKVHKMKQEKVSTWTMKLLVDAIMNSRLSTISNTLDES 430
                          E K I +  +HK+  + VS W MK L++ I N  L+T+   L + 
Sbjct: 455 PFLSHVLSNGGGGGGENKGITIDSLHKLNPKNVSAWKMKRLMNIIRNGSLTTLDEQLQDP 514

Query: 431 VNEGEHADMEITNEMELLVEEMNILTTIFLKLDNEKISYPNSVL 474
             + +  + +I +E E  +    I   +       K  Y N ++
Sbjct: 515 SLDDDKGN-QIRSEFEAKLAARKIFHNV--AKPGSKFIYANDIM 555

Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPG3|MSL4_ARATH Mechanosensitive ion channel protein 4 OS=Arabidopsis thaliana GN=MSL4 PE=3 SV=1

 Score =  201 bits (510), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 108/311 (34%), Positives = 172/311 (55%), Gaps = 40/311 (12%)

Query: 187 LIQWVAFLCNVGCLIVSLTVNKWENFMIWGLEIWKWCVLVLVIFCGMLVTNWFMHVIVFV 246
           +I+W+  +  +  LI SL +       +W L +WKW V+VLV+ CG LV++W + + V+ 
Sbjct: 260 IIEWIFLILIIASLICSLVIPYLRGKTLWDLALWKWEVMVLVLICGRLVSSWIVKLFVYF 319

Query: 247 IETNFLLRKKVLYFVHGLKKSVQVFIWLALVLVTWVLLFNHGVKRSEVATKVLHYITWTL 306
           +E+NFL RKKVLYFV+G++K VQ  +WL LVL+ W  LF+  V+R E+ + VL Y+T  L
Sbjct: 320 VESNFLWRKKVLYFVYGIRKPVQNCLWLGLVLIAWHFLFDKKVER-EMRSTVLKYVTKVL 378

Query: 307 VTFLIGAFLWLLKTLSLKILASNFHVNRFFDRIQESVFHQYVLQTLSGPPLIE---EDER 363
           +  L+   +WL+KTL +K+LAS+FH++ +FDRIQES+F QYV++TLSGPP IE   E+E+
Sbjct: 379 ICLLVAVIIWLIKTLLVKVLASSFHMSTYFDRIQESLFTQYVIETLSGPPRIEIHIEEEK 438

Query: 364 VG-----------------------------------RAPS-FGQLSIRSNKKGKEAKET 387
           V                                    ++PS  G+  + S    K+    
Sbjct: 439 VANDVKTFEIVGRKLSPLGPKAVSSPPQVTVGSGRLQKSPSRVGKSPVLSRSGSKKEGGE 498

Query: 388 KIIDMGKVHKMKQEKVSTWTMKLLVDAIMNSRLSTISNTLDESVNEGEHADMEITNEMEL 447
           + I +  + +M  + VS W MK L++ I    LST+   + ++  + +    +I +E E 
Sbjct: 499 EGIRIDHLQRMNTKNVSAWKMKKLMNVIKKGTLSTLDEQIQDTTTQEDDKATQIRSEFEA 558

Query: 448 LVEEMNILTTI 458
            +    I   +
Sbjct: 559 KLAARKIFQNV 569

Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	514
343887313	694	mechanosensitive ion channel domain-cont	0.743	0.550	0.827	0.0
343887312	777	mechanosensitive ion channel domain-cont	0.857	0.567	0.678	1e-162
224092103	622	predicted protein [Populus trichocarpa]	0.754	0.623	0.642	1e-133
297811331	732	mechanosensitive ion channel domain-cont	0.844	0.592	0.564	1e-129
255550139	762	conserved hypothetical protein [Ricinus	0.852	0.574	0.547	1e-127
356514713	767	PREDICTED: uncharacterized protein At5g1	0.848	0.568	0.545	1e-125
356509838	845	PREDICTED: uncharacterized protein At5g1	0.830	0.505	0.546	1e-125
15239859	734	mechanosensitive channel of small conduc	0.844	0.591	0.551	1e-123
357465835	754	Fgenesh protein [Medicago truncatula] gi	0.770	0.525	0.550	1e-121
15239769	742	mechanosensitive channel of small conduc	0.842	0.583	0.506	1e-118

>gi|343887313|dbj|BAK61859.1| mechanosensitive ion channel domain-containing protein [Citrus unshiu]

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/446 (82%), Positives = 374/446 (83%), Gaps = 64/446 (14%)

Query: 1   MDANAKKKAVNSGEISISEKKISNGSEVVIKIASEESPSVSTEKVTNGFESNSVPPVSCP 60
           MDANAKKKAVNSGEISISEKKISNGSEVVIKIASEESPSV+TEKVTNGFESNSVPPVSCP
Sbjct: 1   MDANAKKKAVNSGEISISEKKISNGSEVVIKIASEESPSVTTEKVTNGFESNSVPPVSCP 60

Query: 61  SPEPEGARFTRSHTKPPKIPTTNDAVLIRRRSLARSVYSKPKSRFGEPSYNDPNMIVEDD 120
           SPEPEGARFTRSHTKPPKIPTTNDAVLIR RSLARSVYSKPKSRFGEPSYNDPNMIVEDD
Sbjct: 61  SPEPEGARFTRSHTKPPKIPTTNDAVLIRSRSLARSVYSKPKSRFGEPSYNDPNMIVEDD 120

Query: 121 DSALSEQLGGNSLSRTSCNTSKRSISSSRTNSIATKMSSIASDDEEEIYNKVELIKEKRK 180
           DSALSEQLGGNSLSRTSCNTSKRSISSSRTNSIA  MSSIASDDEEEIYNKVELIKEKRK
Sbjct: 121 DSALSEQLGGNSLSRTSCNTSKRSISSSRTNSIAPNMSSIASDDEEEIYNKVELIKEKRK 180

Query: 181 RMTPMDLIQWVAFLCNVGCLIVSLTVNKWENFMIWGLEIWKWCVLVLVIFCGMLVTNWFM 240
           RMTPMDLIQWVAFLCNVGCLI S             ++++ W  LVLV            
Sbjct: 181 RMTPMDLIQWVAFLCNVGCLIKS-------------VQVFIWLALVLV------------ 215

Query: 241 HVIVFVIETNFLLRKKVLYFVHGLKKSVQVFIWLALVLVTWVLLFNHGVKRSEVATKVLH 300
                                                  TWVLLFNHGVKRSEVATKVLH
Sbjct: 216 ---------------------------------------TWVLLFNHGVKRSEVATKVLH 236

Query: 301 YITWTLVTFLIGAFLWLLKTLSLKILASNFHVNRFFDRIQESVFHQYVLQTLSGPPLIEE 360
           YITWTLVTFLIGAFLWLLKTLSLKILASNFHVNRFFDRIQESVFHQYVLQTLSGPPLIEE
Sbjct: 237 YITWTLVTFLIGAFLWLLKTLSLKILASNFHVNRFFDRIQESVFHQYVLQTLSGPPLIEE 296

Query: 361 DERVGRAPSFGQLSIRSNKKGKEAKETKIIDMGKVHKMKQEKVSTWTMKLLVDAIMNSRL 420
           DERVGRAPSFGQLSIRS KKGKEAKETKIIDMGKVHKMKQEKVSTWTMKLLVDAIMNSRL
Sbjct: 297 DERVGRAPSFGQLSIRSKKKGKEAKETKIIDMGKVHKMKQEKVSTWTMKLLVDAIMNSRL 356

Query: 421 STISNTLDESVNEGEHADMEITNEME 446
           STISNTLDESVNEGEHADMEITNEME
Sbjct: 357 STISNTLDESVNEGEHADMEITNEME 382

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343887312|dbj|BAK61858.1| mechanosensitive ion channel domain-containing protein [Citrus unshiu]

 Score =  579 bits (1493), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 319/470 (67%), Positives = 367/470 (78%), Gaps = 29/470 (6%)

Query: 1   MDANAKKKAVNSGEISISEKKISNGSEVVIKIASEESP--------------SVSTEKVT 46
           MDA  +K AVN GEIS+SEKK  NGSEVVIKI+S+ESP                +TE VT
Sbjct: 1   MDAE-EKAAVNGGEISMSEKKNVNGSEVVIKISSDESPKDNVDARNSKGSSSEATTEPVT 59

Query: 47  NGFESNSVPPVSCPSPEPEGARFTRSHTKPPKIPTTNDAV-LIRRRSLARSVYSKPKSRF 105
            GF + SVP  S PSPE    RF  S  KPPKIPTTN+A  L RRRSLARSVYSKPKSRF
Sbjct: 60  AGFAAKSVP-ASSPSPE---IRFASSPNKPPKIPTTNEAATLARRRSLARSVYSKPKSRF 115

Query: 106 GEPSYNDPNMIVEDDDSALSEQLGGNSLSRTS---CNTSKRSISSSRTNSIATKMSSIAS 162
           GEPSY D N   E  D +  +Q+G NS  RTS    + + +S  S+RTNSI  K   +AS
Sbjct: 116 GEPSYIDDNAFDEHVDLSRRDQVGVNSPYRTSFSRASPNSKSGLSARTNSITPKTPLMAS 175

Query: 163 -----DDEEEIYNKVELIKEKRKRMTPMDLIQWVAFLCNVGCLIVSLTVNKWENFMIWGL 217
                +D+EEIY KV+LIKEKR ++ P+ LI+W+ F C VGCL+ SLT ++ E  +IWGL
Sbjct: 176 PRGPGEDDEEIYKKVKLIKEKRNKVKPIVLIEWIFFGCTVGCLVASLTWDELEKSVIWGL 235

Query: 218 EIWKWCVLVLVIFCGMLVTNWFMHVIVFVIETNFLLRKKVLYFVHGLKKSVQVFIWLALV 277
           E+WKWC+LVLVIF GMLVTNW MH IVF+IE NFLLRKKVLYFVHGLKK V+VFIWLALV
Sbjct: 236 EVWKWCLLVLVIFSGMLVTNWVMHFIVFLIEKNFLLRKKVLYFVHGLKKIVKVFIWLALV 295

Query: 278 LVTWVLLFNHGVKRSEVATKVLHYITWTLVTFLIGAFLWLLKTLSLKILASNFHVNRFFD 337
           L+TWVLLF+HGVKRS++ATK+L YI+WTLVT  IGAFLWLLKTL LKILASNFHV RFFD
Sbjct: 296 LITWVLLFDHGVKRSKLATKILDYISWTLVTVQIGAFLWLLKTLLLKILASNFHVTRFFD 355

Query: 338 RIQESVFHQYVLQTLSGPPLIEEDERVGRAPSFGQLSIRSNKKGKEAKETKIIDMGKVHK 397
           RIQESVFHQYVLQTLSGP LIEE ERVGR+PSFGQLSI++ KKGKE+++TKIIDMGKVHK
Sbjct: 356 RIQESVFHQYVLQTLSGPALIEEAERVGRSPSFGQLSIKNKKKGKESEKTKIIDMGKVHK 415

Query: 398 MKQEKVSTWTMKLLVDAIMNSRLSTISNTLDESVNE-GEHADMEITNEME 446
           MKQEKVS WTMK+LVDA+MNS LSTISN LDES+ + GE AD EIT+EME
Sbjct: 416 MKQEKVSMWTMKVLVDAVMNSGLSTISNALDESIEDGGEQADKEITSEME 465

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092103|ref|XP_002309474.1| predicted protein [Populus trichocarpa] gi|222855450|gb|EEE92997.1| predicted protein [Populus trichocarpa]

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 257/400 (64%), Positives = 304/400 (76%), Gaps = 12/400 (3%)

Query: 56  PVSCPSPEPEGARFTRSHTKPPKIPTTNDAVLIRRRSLARSVYSKPKSRFGEPSYNDPNM 115
           P SCPSPE   +  +++  KPPKIPT N+  L RRRSL RSVYSKPKSRFGE  Y   + 
Sbjct: 4   PFSCPSPEISWS--SQTQRKPPKIPTPNEN-LTRRRSLVRSVYSKPKSRFGEQPYGIDST 60

Query: 116 IVEDDDSALSEQLGG-----NSLSRTSCNT-SKRSISSSRTNSIATKMSSIASDDEEEIY 169
           ++E++ S L EQ+       N L+R S N  S  S+ + +T  +A+       +DEEE++
Sbjct: 61  LLEENVSTLQEQIATASPHRNLLTRGSPNNKSASSVITPKTPLMASPGGPADEEDEEEVW 120

Query: 170 NKVELIKEK-RKRMTPMDLIQWVAFLCNVGCLIVSLTVNKWENFMIWGLEIWKWCVLVLV 228
            +VE  K+K R+R+    +I+WVAFLC +GCLI SLTV K E   IW LE WKWCVLV+V
Sbjct: 121 KRVESSKQKQRRRVGAKAVIEWVAFLCILGCLIASLTVEKLEKTTIWSLEFWKWCVLVMV 180

Query: 229 IFCGMLVTNWFMHVIVFVIETNFLLRKKVLYFVHGLKKSVQVFIWLALVLVTWVLLFNHG 288
           IF GMLVTNWFMHVIVF+IE NFLL+KKVLYFVHGLKKSVQVFIW+AL+L+ W  LFN G
Sbjct: 181 IFSGMLVTNWFMHVIVFLIERNFLLKKKVLYFVHGLKKSVQVFIWIALILLAWAFLFNRG 240

Query: 289 VKRSEVATKVLHYITWTLVTFLIGAFLWLLKTLSLKILASNFHVNRFFDRIQESVFHQYV 348
           V+RS+ ATK+L  IT TL++ LIG+FLWLLKTLSLKILASNFHV+ FFDR QES+FHQYV
Sbjct: 241 VERSKTATKILGCITVTLMSLLIGSFLWLLKTLSLKILASNFHVSNFFDRTQESIFHQYV 300

Query: 349 LQTLSGPPLIEEDERVGRAPSFGQLSIRSNKKGKEAKETKIIDMGKVHKMKQEKVSTWTM 408
           LQTLSGPPLIEE ERVGR+PS GQLS RS KKGK  KE K+IDM KVHKMKQ KVS WTM
Sbjct: 301 LQTLSGPPLIEEAERVGRSPSMGQLSFRSTKKGKATKEKKVIDMAKVHKMKQGKVSAWTM 360

Query: 409 KLLVDAIMNSRLSTISNTLDESV--NEGEHADMEITNEME 446
           K+LVDA+ +S LSTISNTLDES    E E +D EITNEME
Sbjct: 361 KVLVDAVTSSGLSTISNTLDESFADREVEQSDKEITNEME 400

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811331|ref|XP_002873549.1| mechanosensitive ion channel domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297319386|gb|EFH49808.1| mechanosensitive ion channel domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 253/448 (56%), Positives = 321/448 (71%), Gaps = 14/448 (3%)

Query: 17  ISEKKISNGS--EVVIKIASEESPSVSTEKVTNGFESNSVPPVSCPSPEPEGARFTRSHT 74
           ++E+K SNG   EVVI ++ EE+   S E  +   ES    P+S  SP PE ++   S  
Sbjct: 1   MAEQKSSNGGGGEVVINVSGEEASKRSMEMASP--ESEKGVPIS-KSPSPEISKLVGSPN 57

Query: 75  KPPKIPTTNDAVLIRRRSLARSVYSKPKSRFGEPSYNDPNMIVEDDDSALSEQLG-GNSL 133
           KPP+ P  N+  L +R+S ARSVYSKPKSRF +PS      ++E++   + EQLG G S 
Sbjct: 58  KPPRAPNRNNEGLTQRKSFARSVYSKPKSRFVDPSCPVDTTVLEEE---VREQLGTGFSF 114

Query: 134 SRTSCNT-SKRSISSSRTNSIATKMSSIASDDEEEIYNKVELIKEKRKRMTPMDLIQWVA 192
           SR+S N  S RS+ S  T  +    + +  D++EEIY KV+L KE R +++ + LI+   
Sbjct: 115 SRSSPNNKSNRSVGS--TAPLTPSKAVVEKDEDEEIYKKVKLNKEMRSKISTLALIESAF 172

Query: 193 FLCNVGCLIVSLTVNKWENFMIWGLEIWKWCVLVLVIFCGMLVTNWFMHVIVFVIETNFL 252
           F+  +  L+ SLT+N  +N  IWGLE+WKWCVLV+VIF GMLVTNWFM ++VF+IETNFL
Sbjct: 173 FVVILSALVASLTINVLKNHTIWGLEVWKWCVLVMVIFSGMLVTNWFMRLVVFLIETNFL 232

Query: 253 LRKKVLYFVHGLKKSVQVFIWLALVLVTWVLLFNHGVKRSEVATKVLHYITWTLVTFLIG 312
           LR+KVLYFVHGLKKSVQVFIWL L+LV W+LLFN  VKRS+ ATK+L+ IT TL++ L G
Sbjct: 233 LRRKVLYFVHGLKKSVQVFIWLCLILVAWILLFNRDVKRSQAATKILNVITRTLISVLTG 292

Query: 313 AFLWLLKTLSLKILASNFHVNRFFDRIQESVFHQYVLQTLSGPPLIEEDERVGRAPSFGQ 372
           +FLWL+KTL LKILA+NF+VN FFDRIQ+SVFHQYVLQTLSGPPLIEE ERVGR PS G 
Sbjct: 293 SFLWLVKTLLLKILAANFNVNNFFDRIQDSVFHQYVLQTLSGPPLIEEAERVGREPSTGH 352

Query: 373 LSIRSNKKGKEAKETKIIDMGKVHKMKQEKVSTWTMKLLVDAIMNSRLSTISNTLDESV- 431
           LS  S  K    KE K+IDMGKVHKMK+EKVS WTM++LV+A+  S LSTIS+TLDE+  
Sbjct: 353 LSFASVVKKGTVKEKKVIDMGKVHKMKREKVSAWTMRVLVEAVRTSGLSTISDTLDETTY 412

Query: 432 NEG-EHADMEITNEMELLVEEMNILTTI 458
            EG E AD EIT+EME L    ++   +
Sbjct: 413 GEGKEQADREITSEMEALAAAYHVFRNV 440

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550139|ref|XP_002516120.1| conserved hypothetical protein [Ricinus communis] gi|223544606|gb|EEF46122.1| conserved hypothetical protein [Ricinus communis]

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 255/466 (54%), Positives = 315/466 (67%), Gaps = 28/466 (6%)

Query: 17  ISEKKISNGS--EVVIKIASEESPSVSTEKVTNGFESNSVPPVSCPSPEPEGARFTRS-- 72
           ++EKK SNG   EV+I I+ +E+P  S  K ++   S    P S P  E  G  F ++  
Sbjct: 1   MAEKKTSNGGRGEVLITISGDETPKGSASKDSDSVASKQSRP-SSPVKESNGGAFAKTVS 59

Query: 73  -HTKPPKIPTTNDAV------------LIRRRSLARSVYSKPKSRFGEPSYNDPNMIVED 119
            +   P+I + N               L RRRSLARSVYSKPKSRFGE        ++E+
Sbjct: 60  INNHSPEISSLNPTPTKPPKIPVSNENLTRRRSLARSVYSKPKSRFGEQPVLVDATVLEE 119

Query: 120 DDSALSEQLGGN-----SLSRTSCNTSKRSISSSRTNSIATKMSSIASDDEEEIYNKVEL 174
           D   L EQ+  N     SLSR S N   +S SS RTNS+         D+ E++  KV+ 
Sbjct: 120 DSLILEEQISRNLSYRKSLSRGSANN--KSASSIRTNSMNPNGPVDDEDEVEDVVKKVQS 177

Query: 175 IKEKRKRMTPMDLIQWVAFLCNVGCLIVSLTVNKWENFMIWGLEIWKWCVLVLVIFCGML 234
           IKEK KR+    +IQW+ F+C  GCL+ SLTV K E  MIWGLE WKWCVL+LVI  GM 
Sbjct: 178 IKEKNKRVGAKAVIQWITFVCLAGCLVASLTVQKLEKTMIWGLEPWKWCVLLLVIISGMF 237

Query: 235 VTNWFMHVIVFVIETNFLLRKKVLYFVHGLKKSVQVFIWLALVLVTWVLLFNHGVKRSEV 294
           +TNWFMH IVFVIE NFLLRKKVLYFV+GLK SVQVF+W+ LVL+ W  L +H + RS+ 
Sbjct: 238 ITNWFMHFIVFVIERNFLLRKKVLYFVYGLKNSVQVFVWIGLVLLAWAFLIDHEIGRSKT 297

Query: 295 ATKVLHYITWTLVTFLIGAFLWLLKTLSLKILASNFHVNRFFDRIQESVFHQYVLQTLSG 354
           AT +L  +TWTL++ LIG+FLWL+K LSLKILASNFHVN+FFDRIQESVF+QYVLQTLSG
Sbjct: 298 ATTILKCVTWTLMSLLIGSFLWLVKNLSLKILASNFHVNKFFDRIQESVFNQYVLQTLSG 357

Query: 355 PPLIEEDERVGRAPSFGQLSIRSNKKGKEAKETKIIDMGKVHKMKQEKVSTWTMKLLVDA 414
           PPLIEE ERVGR+ S GQLS RS K GK  +E K+ID+G +HK+KQEKVS WTMK+LVDA
Sbjct: 358 PPLIEEAERVGRSTSSGQLSFRSTKNGK-TEEKKVIDIGMLHKVKQEKVSAWTMKVLVDA 416

Query: 415 IMNSRLSTISNTLDESVN--EGEHADMEITNEMELLVEEMNILTTI 458
           + +S LST+SNTL+ESV   + +  DMEITNEME      +I   +
Sbjct: 417 VTSSGLSTLSNTLEESVGGRDKQTTDMEITNEMEATAAAYHIFRNV 462

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514713|ref|XP_003526048.1| PREDICTED: uncharacterized protein At5g12080-like [Glycine max]

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 254/466 (54%), Positives = 319/466 (68%), Gaps = 30/466 (6%)

Query: 1   MDA-NAKKKAVNSGEISISEKKISNGSEVVIKIASEESPSV--STEKVTNGFESNSV--P 55
           MD  N ++  +  GE++++EKK     EV++ I +E+  S   S  ++ N  E      P
Sbjct: 1   MDVINKQQGGLKCGEVTMAEKK----REVMVAIPNEQQHSRVNSPHRILNDNEVAGAKSP 56

Query: 56  PVSCPSPEPEGARFTRSHTKPPKIPTTNDAVLIRRRSLARSVYSKPKSRFGEPSYNDPNM 115
           P++C SPE    RF  S  KPPK+ T+N A L RR+SL RSVYSKPKSRFGE  Y     
Sbjct: 57  PLNCASPE---IRFMPSPNKPPKVFTSN-ANLTRRKSLTRSVYSKPKSRFGEQPYPIDGT 112

Query: 116 IVEDD-DSALSEQLGGNSLSRTSCNTSKRSISSSRTNSIAT----KMSSIAS------DD 164
           ++ED+ +S L E L   S  + S N + ++ + +RT SI +    K   +AS      D 
Sbjct: 113 LLEDNANSTLQENLTVGSPYKASPNNNNKAGTVNRTFSILSVITPKTPLMASPGPAGEDF 172

Query: 165 EEEIYNKVELIKEKR-KRMTPMDLIQWVAFLCNVGCLIVSLTVNKWENFMIWGLEIWKWC 223
           +E IY KVEL K KR +R+T   L +W  F+C    L+ SL V K +   IWGL  W+ C
Sbjct: 173 DEIIYKKVELSKNKRSRRLTAKMLFEWFVFVCIASSLVASLAVGKLKRTEIWGLGFWRLC 232

Query: 224 VLVLVIFCGMLVTNWFMHVIVFVIETNFLLRKKVLYFVHGLKKSVQVFIWLALVLVTWVL 283
           VLV+V FCGMLVT WFMH++VF+IETNFLLRKKVLYFV+GLKK VQ FIWL LVL+TWVL
Sbjct: 233 VLVMVTFCGMLVTRWFMHIVVFLIETNFLLRKKVLYFVYGLKKCVQFFIWLGLVLLTWVL 292

Query: 284 LFNHGVKRSEVATKVLHYITWTLVTFLIGAFLWLLKTLSLKILASNFHVNRFFDRIQESV 343
           L N GV R+E+A+K+L+ +TWTLV+ LIGAFLW +KTL LKILASNFHV  FFDRIQES+
Sbjct: 293 LINRGVHRTELASKILNGVTWTLVSLLIGAFLWFVKTLLLKILASNFHVKSFFDRIQESL 352

Query: 344 FHQYVLQTLSGPPLIEEDERVGRAPSFGQLSIRS-NKKGKEAKETKIIDMGKVHKMKQEK 402
           FHQY+LQTLSGPPL+EE E+VG + S G  S RS + KG   KET  ID+ K+H+MKQEK
Sbjct: 353 FHQYILQTLSGPPLVEEAEKVGASYSVGHFSFRSTDGKGGTKKET--IDIAKLHQMKQEK 410

Query: 403 VSTWTMKLLVDAIMNSRLSTISNTLDESVNEG--EHADMEITNEME 446
           VS WTMK+LVDA+  S LSTIS+ LDES +EG  E  D EITNEME
Sbjct: 411 VSAWTMKVLVDAMTTSGLSTISSALDESFDEGENEQTDKEITNEME 456

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509838|ref|XP_003523652.1| PREDICTED: uncharacterized protein At5g12080-like [Glycine max]

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 253/463 (54%), Positives = 315/463 (68%), Gaps = 36/463 (7%)

Query: 10  VNSGEISISEKKISNGSEVVIKIASE----------ESPSVSTEKVTNGFE-SNSVPPVS 58
           +  GE+S+SEKK     EV++ I  E          +S   S  +  N  E +   PP++
Sbjct: 82  LKGGEVSMSEKK----REVMVAIPHEGGAESLMPKQQSRVNSPHRALNDNEVAAKSPPLN 137

Query: 59  CPSPEPEGARFTRSHTKPPKIPTTNDAVLIRRRSLARSVYSKPKSRFGEPSYN-DPNMIV 117
           C SPE    RF  S  KPPK+PT+N A+L RR+SL RSVYSKPKSRFGE SY  D  ++ 
Sbjct: 138 CASPE---IRFMPSPNKPPKVPTSN-AILTRRKSLTRSVYSKPKSRFGEQSYPIDGTLLE 193

Query: 118 EDDDSALSEQLGGNSLSRTSCNTSKRSISSSRTNSIATKMS---------SIASDDEEEI 168
           E+  S L E L   S  + S N + +  + +RT SI + ++          +A +D +EI
Sbjct: 194 ENATSTLQENLTVGSPYKASPNNNNKPGTVNRTFSILSVVTPKTPLMASPGLAGEDFDEI 253

Query: 169 -YNKVELIKEKR-KRMTPMDLIQWVAFLCNVGCLIVSLTVNKWENFMIWGLEIWKWCVLV 226
            Y KVEL K  R +R+T   L +W  F+C    L+ SLTV K +   IWGL  W+WCVLV
Sbjct: 254 IYKKVELSKNMRSRRLTVKVLFEWFVFVCIASSLVASLTVGKLKRTEIWGLGFWRWCVLV 313

Query: 227 LVIFCGMLVTNWFMHVIVFVIETNFLLRKKVLYFVHGLKKSVQVFIWLALVLVTWVLLFN 286
           +V FCGMLVT WFM ++VF+IETNFLLRKKVLYFVHGLKK VQ FIWL LVL+TWVLL N
Sbjct: 314 MVTFCGMLVTRWFMLIVVFLIETNFLLRKKVLYFVHGLKKCVQFFIWLGLVLLTWVLLIN 373

Query: 287 HGVKRSEVATKVLHYITWTLVTFLIGAFLWLLKTLSLKILASNFHVNRFFDRIQESVFHQ 346
            GV R+E+A+K+L+ +TWTLV+ LIGAFLW +KTL LKILASNFHV  FFDRIQES+FHQ
Sbjct: 374 RGVHRTELASKILNGVTWTLVSLLIGAFLWFVKTLLLKILASNFHVKSFFDRIQESLFHQ 433

Query: 347 YVLQTLSGPPLIEEDERVGRAPSFGQLSIRS-NKKGKEAKETKIIDMGKVHKMKQEKVST 405
           Y+LQ LSGPPL+EE E+VG + S G+ S RS + KG   KET  ID+ K+H+MKQEKVS 
Sbjct: 434 YILQNLSGPPLVEEAEKVGASYSVGRFSFRSTDGKGGTKKET--IDIAKLHRMKQEKVSA 491

Query: 406 WTMKLLVDAIMNSRLSTISNTLDESVNEG--EHADMEITNEME 446
           WTMK+LVDA+  S LSTIS+ LDES +EG  E  D EITNEME
Sbjct: 492 WTMKVLVDAMTTSGLSTISSALDESFDEGENEQTDKEITNEME 534

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239859|ref|NP_196769.1| mechanosensitive channel of small conductance-like 10 [Arabidopsis thaliana] gi|30683939|ref|NP_850810.1| mechanosensitive channel of small conductance-like 10 [Arabidopsis thaliana] gi|186522320|ref|NP_001119212.1| mechanosensitive channel of small conductance-like 10 [Arabidopsis thaliana] gi|75181076|sp|Q9LYG9.1|MSL10_ARATH RecName: Full=Mechanosensitive ion channel protein 10; AltName: Full=Mechanosensitive channel of small conductance-like 10; AltName: Full=MscS-Like protein 10; Short=AtMSL10 gi|7573373|emb|CAB87679.1| putative protein [Arabidopsis thaliana] gi|9759375|dbj|BAB10026.1| unnamed protein product [Arabidopsis thaliana] gi|18700073|gb|AAL77649.1| AT5g12080/MXC9_3 [Arabidopsis thaliana] gi|25090179|gb|AAN72247.1| At5g12080/MXC9_3 [Arabidopsis thaliana] gi|227204347|dbj|BAH57025.1| AT5G12080 [Arabidopsis thaliana] gi|332004376|gb|AED91759.1| mechanosensitive channel of small conductance-like 10 [Arabidopsis thaliana] gi|332004377|gb|AED91760.1| mechanosensitive channel of small conductance-like 10 [Arabidopsis thaliana] gi|332004378|gb|AED91761.1| mechanosensitive channel of small conductance-like 10 [Arabidopsis thaliana]

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 248/450 (55%), Positives = 312/450 (69%), Gaps = 16/450 (3%)

Query: 17  ISEKKISNGS----EVVIKIASEESPSVSTEKVTNGFESNSVPPVSCPSPEPEGARFTRS 72
           ++E+K SNG     +VVI +  EE+   S E  +   ES    P S  SP PE ++   S
Sbjct: 1   MAEQKSSNGGGGGGDVVINVPVEEASRRSKEMASP--ESEKGVPFS-KSPSPEISKLVGS 57

Query: 73  HTKPPKIPTTNDAVLIRRRSLARSVYSKPKSRFGEPSYNDPNMIVEDDDSALSEQLG-GN 131
             KPP+ P  N+  L +R+S ARSVYSKPKSRF +PS      I+E++   + EQLG G 
Sbjct: 58  PNKPPRAPNQNNVGLTQRKSFARSVYSKPKSRFVDPSCPVDTSILEEE---VREQLGAGF 114

Query: 132 SLSRTSCNT-SKRSISSSRTNSIATKMSSIASDDEEEIYNKVELIKEKRKRMTPMDLIQW 190
           S SR S N  S RS+ S     +      +  D++EEIY KV+L +E R +++ + LI+ 
Sbjct: 115 SFSRASPNNKSNRSVGSPA--PVTPSKVVVEKDEDEEIYKKVKLNREMRSKISTLALIES 172

Query: 191 VAFLCNVGCLIVSLTVNKWENFMIWGLEIWKWCVLVLVIFCGMLVTNWFMHVIVFVIETN 250
             F+  +  L+ SLT+N  ++   WGLE+WKWCVLV+VIF GMLVTNWFM +IVF+IETN
Sbjct: 173 AFFVVILSALVASLTINVLKHHTFWGLEVWKWCVLVMVIFSGMLVTNWFMRLIVFLIETN 232

Query: 251 FLLRKKVLYFVHGLKKSVQVFIWLALVLVTWVLLFNHGVKRSEVATKVLHYITWTLVTFL 310
           FLLR+KVLYFVHGLKKSVQVFIWL L+LV W+LLFNH VKRS  ATKVL  IT TL++ L
Sbjct: 233 FLLRRKVLYFVHGLKKSVQVFIWLCLILVAWILLFNHDVKRSPAATKVLKCITRTLISIL 292

Query: 311 IGAFLWLLKTLSLKILASNFHVNRFFDRIQESVFHQYVLQTLSGPPLIEEDERVGRAPSF 370
            GAF WL+KTL LKILA+NF+VN FFDRIQ+SVFHQYVLQTLSG PL+EE ERVGR PS 
Sbjct: 293 TGAFFWLVKTLLLKILAANFNVNNFFDRIQDSVFHQYVLQTLSGLPLMEEAERVGREPST 352

Query: 371 GQLSIRSNKKGKEAKETKIIDMGKVHKMKQEKVSTWTMKLLVDAIMNSRLSTISNTLDES 430
           G LS  +  K    KE K+IDMGKVHKMK+EKVS WTM++L++A+  S LSTIS+TLDE+
Sbjct: 353 GHLSFATVVKKGTVKEKKVIDMGKVHKMKREKVSAWTMRVLMEAVRTSGLSTISDTLDET 412

Query: 431 V-NEG-EHADMEITNEMELLVEEMNILTTI 458
              EG E AD EIT+EME L    ++   +
Sbjct: 413 AYGEGKEQADREITSEMEALAAAYHVFRNV 442

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357465835|ref|XP_003603202.1| Fgenesh protein [Medicago truncatula] gi|355492250|gb|AES73453.1| Fgenesh protein [Medicago truncatula]

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 235/427 (55%), Positives = 292/427 (68%), Gaps = 31/427 (7%)

Query: 35  EESPSVSTEKVTNGFESNSVPPVSCPSPEPEGARFTRSHTKPPKIPTTNDAVLIRRRSLA 94
           E SP  ST+           PP++C SPE    RF  S  KPPK+P TN++ L  R++L 
Sbjct: 33  ESSPRYSTKS----------PPLNCASPE---IRFIPSPNKPPKVPATNES-LTPRKTLV 78

Query: 95  RSVYSKPKSRFGEPSYNDPNMIVEDD--DSALSEQLGGNSLSRTSCNTSKRSISSSRTNS 152
           RSV+SKPKSRFGE  Y     ++E++   S L +Q+   S  + S + + +  +  RT S
Sbjct: 79  RSVFSKPKSRFGEQPYPIDGTLLEENVTSSNLQDQIAVTSPYKASRSPNNKHGTVYRTVS 138

Query: 153 IA----------TKMSSIASDDEEEIYNKVELIKEKRKRMTPMDLIQWVAFLCNVGCLIV 202
           I           T       D +E IY KVE  K KRKR+T   LI+   F+C  G L+ 
Sbjct: 139 ITSVVTPRTPLMTSPGPAGEDPDEIIYKKVEFSKGKRKRLTTKVLIELFVFVCITGSLLA 198

Query: 203 SLTVNKWENFMIWGLEIWKWCVLVLVIFCGMLVTNWFMHVIVFVIETNFLLRKKVLYFVH 262
           SLTV + +   IW L +W+WC+LV+V FCGMLVT WF H++VF+IE NFLL+KKVLYFVH
Sbjct: 199 SLTVEELKRTEIWSLGLWRWCMLVMVTFCGMLVTKWFTHIVVFLIEMNFLLKKKVLYFVH 258

Query: 263 GLKKSVQVFIWLALVLVTWVLLFNHGVKRSEVATKVLHYITWTLVTFLIGAFLWLLKTLS 322
           GLKK +QVF W+ALVL+TWVLL N GV+RS++ATK+L  +TWTLV+ LIG FLW++KTL 
Sbjct: 259 GLKKCIQVFTWIALVLLTWVLLINRGVQRSKLATKILDGVTWTLVSLLIGTFLWVIKTLL 318

Query: 323 LKILASNFHVNRFFDRIQESVFHQYVLQTLSGPPLIEEDERVGRAPSFGQLSIRS-NKKG 381
           LKILAS+FHV  FFDRIQES+FHQYVLQTLSGPPL+EE E+VG + S    S RS   KG
Sbjct: 319 LKILASSFHVKSFFDRIQESIFHQYVLQTLSGPPLMEEAEKVGGSQSTSHFSFRSTTSKG 378

Query: 382 KEAKETKIIDMGKVHKMKQEKVSTWTMKLLVDAIMNSRLSTISNTLDESVN--EGEHADM 439
              KE  +IDM K+HKMKQEKVS+WTMK+LVDA+MNSRLSTISN+LDES    E E  D 
Sbjct: 379 STKKE--VIDMAKLHKMKQEKVSSWTMKILVDAVMNSRLSTISNSLDESFYDVENEQNDK 436

Query: 440 EITNEME 446
           EITNEME
Sbjct: 437 EITNEME 443

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239769|ref|NP_197453.1| mechanosensitive channel of small conductance-like 9 [Arabidopsis thaliana] gi|75147155|sp|Q84M97.1|MSL9_ARATH RecName: Full=Mechanosensitive ion channel protein 9; AltName: Full=Mechanosensitive channel of small conductance-like 9; AltName: Full=MscS-Like protein 9; Short=AtMSL9 gi|30102694|gb|AAP21265.1| At5g19520 [Arabidopsis thaliana] gi|110736360|dbj|BAF00149.1| hypothetical protein [Arabidopsis thaliana] gi|332005337|gb|AED92720.1| mechanosensitive channel of small conductance-like 9 [Arabidopsis thaliana]

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 233/460 (50%), Positives = 312/460 (67%), Gaps = 27/460 (5%)

Query: 17  ISEKKISNGSEVVIKIASEE-------SPS---VSTEKVTNGFE-SNSVPPVSCPSPEPE 65
           ++E+++SNG EVVI ++ +E       SPS   +++     G E S  VPP+S P+PE  
Sbjct: 1   MAERRVSNGEEVVINVSDKEDSKDPRASPSFNPLASPDSDAGIEKSKPVPPISIPTPEI- 59

Query: 66  GARFTRSHTKPPKIPTTNDAVLIRRRSLARSVYSKPKSRFGEP-SYNDPNMIVEDDDSAL 124
             +F+ S  KPPKIP+     L+RR+SL+RS+YSKPKSRFGE  S+   +   E+   +L
Sbjct: 60  -YKFSGSVHKPPKIPSPEG--LVRRKSLSRSIYSKPKSRFGEQQSFRYDSTREENGGRSL 116

Query: 125 SEQLGGNSLSRTSC------NTSKRSISSSRTNSIATKMSSIASDDEEEIYNKVELIKEK 178
            EQ G  S +R S       N S RS++S+  + +A +          EIY KV+L + K
Sbjct: 117 REQFGAGSFARGSFDRASPNNKSNRSVASAALSKVAEEEPDENE----EIYKKVKLHRVK 172

Query: 179 RKRMTPMDLIQWVAFLCNVGCLIVSLTVNKWENFMIWGLEIWKWCVLVLVIFCGMLVTNW 238
           R  M P+  ++ V F+  +G LIVSLT++      IWGLE WKWCVLV+V   GMLVTNW
Sbjct: 173 RSGMKPLAFLELVVFMAILGALIVSLTIDVVNKHTIWGLEFWKWCVLVMVTLSGMLVTNW 232

Query: 239 FMHVIVFVIETNFLLRKKVLYFVHGLKKSVQVFIWLALVLVTWVLLFNHGVKRSEVATKV 298
           FMH +VF+IE N+LLRKKVLYFVHGLKK+VQVFIW +LVL+ W+ LF+  VKR+    + 
Sbjct: 233 FMHFVVFIIEKNYLLRKKVLYFVHGLKKNVQVFIWFSLVLIAWICLFDGDVKRTRKTKRF 292

Query: 299 LHYITWTLVTFLIGAFLWLLKTLSLKILASNFHVNRFFDRIQESVFHQYVLQTLSGPPLI 358
           L +ITWT+V+ L+G+ L+L+KT +LK+LAS F+V  FF+RIQESVFHQYVLQTLSGPPLI
Sbjct: 293 LDFITWTIVSLLVGSILFLVKTFALKVLASKFNVRNFFERIQESVFHQYVLQTLSGPPLI 352

Query: 359 EEDERVGRAPSFGQLSIRSNKKGKEAKETKIIDMGKVHKMKQEKVSTWTMKLLVDAIMNS 418
           EE E VGR PS G LS  +  K  + K+ K+IDMGKVH+MKQEKVS WTM++L++A+  S
Sbjct: 353 EEAENVGRVPSTGHLSF-TRTKDGKVKDKKVIDMGKVHRMKQEKVSAWTMRVLIEAVGTS 411

Query: 419 RLSTISNTLDESVNEGEHADMEITNEMELLVEEMNILTTI 458
            +STIS+TLDE  N+ E  D EITNEME +    ++   +
Sbjct: 412 GISTISSTLDEVNNKKERTDKEITNEMEAVAAAYDVFNNV 451

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	514
TAIR|locus:2143069	734	MSL10 "mechanosensitive channe	0.754	0.528	0.521	3.5e-122
TAIR|locus:2180811	742	MSL9 "mechanosensitive channel	0.754	0.522	0.5	6.7e-119
TAIR|locus:2099382	881	MSL5 "mechanosensitive channel	0.381	0.222	0.388	6.8e-64
TAIR|locus:2024927	881	MSL4 "mechanosensitive channel	0.391	0.228	0.378	2.9e-61
TAIR|locus:2202965	856	MSL6 "mechanosensitive channel	0.391	0.234	0.358	1.3e-54
TAIR|locus:2827671	849	AT2G17000 "AT2G17000" [Arabido	0.562	0.340	0.334	1.2e-53
DICTYBASE|DDB_G0277253	870	DDB_G0277253 "mechanosensitive	0.151	0.089	0.341	3e-08

TAIR|locus:2143069 MSL10 "mechanosensitive channel of small conductance-like 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 964 (344.4 bits), Expect = 3.5e-122, Sum P(2) = 3.5e-122
 Identities = 206/395 (52%), Positives = 260/395 (65%)

Query:    67 ARFTRSHTKPPKIPTTNDAVLIRRRSLARSVYSKPKSRFGEPSYNDPNMIVEDDDSALSE 126
             ++   S  KPP+ P  N+  L +R+S ARSVYSKPKSRF +PS      I+E++   + E
Sbjct:    52 SKLVGSPNKPPRAPNQNNVGLTQRKSFARSVYSKPKSRFVDPSCPVDTSILEEE---VRE 108

Query:   127 QLG-GNSLSRTXXXXXXXXXXXXXXXXXATKMSSIASDDEEEIYNKVELIKEKRKRMTPM 185
             QLG G S SR                   +K+  +  D++EEIY KV+L +E R +++ +
Sbjct:   109 QLGAGFSFSRASPNNKSNRSVGSPAPVTPSKVV-VEKDEDEEIYKKVKLNREMRSKISTL 167

Query:   186 DLIQWVAFLCNVGCLIVSLTVNKWENFMIWGLEIWKWCVLVLVIFCGMLVTNWFMHVIVF 245
              LI+   F+  +  L+ SLT+N  ++   WGLE+WKWCVLV+VIF GMLVTNWFM +IVF
Sbjct:   168 ALIESAFFVVILSALVASLTINVLKHHTFWGLEVWKWCVLVMVIFSGMLVTNWFMRLIVF 227

Query:   246 VIETNFLLRKKVLYFVHGLKKSVQVFIXXXXXXXXXXXXFNHGVKRSEVATKVLHYITWT 305
             +IETNFLLR+KVLYFVHGLKKSVQVFI            FNH VKRS  ATKVL  IT T
Sbjct:   228 LIETNFLLRRKVLYFVHGLKKSVQVFIWLCLILVAWILLFNHDVKRSPAATKVLKCITRT 287

Query:   306 LVTFLIGAFXXXXXXXXXXXXASNFHVNRFFDRIQESVFHQYVLQTLSGPPLIEEDERVG 365
             L++ L GAF            A+NF+VN FFDRIQ+SVFHQYVLQTLSG PL+EE ERVG
Sbjct:   288 LISILTGAFFWLVKTLLLKILAANFNVNNFFDRIQDSVFHQYVLQTLSGLPLMEEAERVG 347

Query:   366 RAPSFGQLSIRSNKKGKEAKETKIIDMGKVHKMKQEKVSTWTMKLLVDAIMNSRLSTISN 425
             R PS G LS  +  K    KE K+IDMGKVHKMK+EKVS WTM++L++A+  S LSTIS+
Sbjct:   348 REPSTGHLSFATVVKKGTVKEKKVIDMGKVHKMKREKVSAWTMRVLMEAVRTSGLSTISD 407

Query:   426 TLDESV-NEG-EHADMEITNEMELLVEEMNILTTI 458
             TLDE+   EG E AD EIT+EME L    ++   +
Sbjct:   408 TLDETAYGEGKEQADREITSEMEALAAAYHVFRNV 442

GO:0005634 "nucleus" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0008381 "mechanically-gated ion channel activity" evidence=IDA;IMP

GO:0050982 "detection of mechanical stimulus" evidence=IMP

GO:0006820 "anion transport" evidence=IDA

TAIR|locus:2180811 MSL9 "mechanosensitive channel of small conductance-like 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 956 (341.6 bits), Expect = 6.7e-119, Sum P(2) = 6.7e-119
 Identities = 197/394 (50%), Positives = 252/394 (63%)

Query:    68 RFTRSHTKPPKIPTTNDAVLIRRRSLARSVYSKPKSRFGEP-SYNDPNMIVEDDDSALSE 126
             +F+ S  KPPKIP+     L+RR+SL+RS+YSKPKSRFGE  S+   +   E+   +L E
Sbjct:    61 KFSGSVHKPPKIPSPEG--LVRRKSLSRSIYSKPKSRFGEQQSFRYDSTREENGGRSLRE 118

Query:   127 QLGGNSLSRTXXXXXXXXXXXXXXXXXA--TKMSSIASDDEEEIYNKVELIKEKRKRMTP 184
             Q G  S +R                  A  +K++    D+ EEIY KV+L + KR  M P
Sbjct:   119 QFGAGSFARGSFDRASPNNKSNRSVASAALSKVAEEEPDENEEIYKKVKLHRVKRSGMKP 178

Query:   185 MDLIQWVAFLCNVGCLIVSLTVNKWENFMIWGLEIWKWCVLVLVIFCGMLVTNWFMHVIV 244
             +  ++ V F+  +G LIVSLT++      IWGLE WKWCVLV+V   GMLVTNWFMH +V
Sbjct:   179 LAFLELVVFMAILGALIVSLTIDVVNKHTIWGLEFWKWCVLVMVTLSGMLVTNWFMHFVV 238

Query:   245 FVIETNFLLRKKVLYFVHGLKKSVQVFIXXXXXXXXXXXXFNHGVKRSEVATKVLHYITW 304
             F+IE N+LLRKKVLYFVHGLKK+VQVFI            F+  VKR+    + L +ITW
Sbjct:   239 FIIEKNYLLRKKVLYFVHGLKKNVQVFIWFSLVLIAWICLFDGDVKRTRKTKRFLDFITW 298

Query:   305 TLVTFLIGAFXXXXXXXXXXXXASNFHVNRFFDRIQESVFHQYVLQTLSGPPLIEEDERV 364
             T+V+ L+G+             AS F+V  FF+RIQESVFHQYVLQTLSGPPLIEE E V
Sbjct:   299 TIVSLLVGSILFLVKTFALKVLASKFNVRNFFERIQESVFHQYVLQTLSGPPLIEEAENV 358

Query:   365 GRAPSFGQLSIRSNKKGKEAKETKIIDMGKVHKMKQEKVSTWTMKLLVDAIMNSRLSTIS 424
             GR PS G LS    K GK  K+ K+IDMGKVH+MKQEKVS WTM++L++A+  S +STIS
Sbjct:   359 GRVPSTGHLSFTRTKDGK-VKDKKVIDMGKVHRMKQEKVSAWTMRVLIEAVGTSGISTIS 417

Query:   425 NTLDESVNEGEHADMEITNEMELLVEEMNILTTI 458
             +TLDE  N+ E  D EITNEME +    ++   +
Sbjct:   418 STLDEVNNKKERTDKEITNEMEAVAAAYDVFNNV 451

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0008381 "mechanically-gated ion channel activity" evidence=IMP

GO:0050982 "detection of mechanical stimulus" evidence=IMP

GO:0080167 "response to karrikin" evidence=IEP

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2099382 MSL5 "mechanosensitive channel of small conductance-like 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 382 (139.5 bits), Expect = 6.8e-64, Sum P(3) = 6.8e-64
 Identities = 77/198 (38%), Positives = 122/198 (61%)

Query:   163 DDEEEIYNKVELIKE-KRKRMTPMDLIQWVAFLCNVGCLIVSLTVNKWENFMIWGLEIWK 221
             ++EE+ +   +L +E KR +++    ++W++ +  V  L+ SLT++  +    W L++WK
Sbjct:   245 EEEEDPFLDEDLPEEFKRDKLSFWVFLEWISLVLIVTSLVCSLTIHNLQRKTWWKLDLWK 304

Query:   222 WCVLVLVIFCGMLVTNWFMHVIVFVIETNFLLRKKVLYFVHGLKKSVQVFIXXXXXXXXX 281
             W V VLV+ CG LV++W + +IVF++E NF  RK+VLYFV+G++KSVQ  +         
Sbjct:   305 WEVTVLVLICGRLVSSWIVRIIVFLVEKNFTWRKRVLYFVYGVRKSVQNCLWLGLVLLAW 364

Query:   282 XXXFNHGVKRSEVATKVLHYITWTLVTFLIGAFXXXXXXXXXXXXASNFHVNRFFDRIQE 341
                F+  V+R E  +  L Y+T  LV  L+               AS+FH++ +FDRIQE
Sbjct:   365 HFLFDKKVER-ETRSTALRYVTRVLVCLLVALIIWLVKTILVKVLASSFHMSTYFDRIQE 423

Query:   342 SVFHQYVLQTLSGPPLIE 359
             S+F QYV++TLSGPPL+E
Sbjct:   424 SLFTQYVIETLSGPPLME 441

GO:0005634 "nucleus" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2024927 MSL4 "mechanosensitive channel of small conductance-like 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 377 (137.8 bits), Expect = 2.9e-61, Sum P(3) = 2.9e-61
 Identities = 78/206 (37%), Positives = 125/206 (60%)

Query:   163 DDEEEIYNKVELIKEKRK-RMTPMDLIQWVAFLCNVGCLIVSLTVNKWENFMIWGLEIWK 221
             ++EE+ +++ +L +  RK ++    +I+W+  +  +  LI SL +       +W L +WK
Sbjct:   235 EEEEDPFSEEDLPEGLRKEKICVWVIIEWIFLILIIASLICSLVIPYLRGKTLWDLALWK 294

Query:   222 WCVLVLVIFCGMLVTNWFMHVIVFVIETNFLLRKKVLYFVHGLKKSVQVFIXXXXXXXXX 281
             W V+VLV+ CG LV++W + + V+ +E+NFL RKKVLYFV+G++K VQ  +         
Sbjct:   295 WEVMVLVLICGRLVSSWIVKLFVYFVESNFLWRKKVLYFVYGIRKPVQNCLWLGLVLIAW 354

Query:   282 XXXFNHGVKRSEVATKVLHYITWTLVTFLIGAFXXXXXXXXXXXXASNFHVNRFFDRIQE 341
                F+  V+R E+ + VL Y+T  L+  L+               AS+FH++ +FDRIQE
Sbjct:   355 HFLFDKKVER-EMRSTVLKYVTKVLICLLVAVIIWLIKTLLVKVLASSFHMSTYFDRIQE 413

Query:   342 SVFHQYVLQTLSGPPLIE---EDERV 364
             S+F QYV++TLSGPP IE   E+E+V
Sbjct:   414 SLFTQYVIETLSGPPRIEIHIEEEKV 439

GO:0005634 "nucleus" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2202965 MSL6 "mechanosensitive channel of small conductance-like 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 1.3e-54, Sum P(2) = 1.3e-54
 Identities = 75/209 (35%), Positives = 125/209 (59%)

Query:   163 DDEEEIYNKVELIKEKRK-RMTPMDLIQWVAFLCNVGCLIVSLTVNKWENFMIWGLEIWK 221
             ++E++ +   +L +E RK +++   +++W++ +  +   + +L +       +W L++WK
Sbjct:   218 EEEDDPFAAEDLPEEYRKDKLSLWIVLEWLSLILIIAGFVCTLAIPSLRKKKLWELQLWK 277

Query:   222 WCVLVLVIFCGMLVTNWFMHVIVFVIETNFLLRKKVLYFVHGLKKSVQVFIXXXXXXXXX 281
             W  +VLV+ CG LV++W + ++VF IE NFLLRK+VLYFV+G++K+VQ  +         
Sbjct:   278 WESMVLVLICGRLVSSWIVKIVVFFIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLLAW 337

Query:   282 XXXFNHGVKRSEVATKVLHYITWTLVTFLIGAFXXXXXXXXXXXXASNFHVNRFFDRIQE 341
                F+  V ++   TK L  +T   V  L+G              AS+FH++ +FDRIQE
Sbjct:   338 HFLFDEKVAKA-ANTKALRVVTKIFVCLLVGFLLWLVKTLLVKVLASSFHMSTYFDRIQE 396

Query:   342 SVFHQYVLQTLSGPPLIE------EDERV 364
             S+F QYV++TLSGPPLIE      E+ER+
Sbjct:   397 SLFTQYVIETLSGPPLIEIQKNEEEEERI 425

GO:0005634 "nucleus" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2827671 AT2G17000 "AT2G17000" [Arabidopsis thaliana (taxid:3702)]

 Score = 381 (139.2 bits), Expect = 1.2e-53, Sum P(2) = 1.2e-53
 Identities = 101/302 (33%), Positives = 161/302 (53%)

Query:   162 SDD-EEEIYNKVE--LIKEKRK-RMTPMDLIQWVAFLCNVGCLIVSLTVNKWENFMIWGL 217
             SDD EEE  +  E  +  E RK +M  + L+QW++ +  V  L++SL ++ W N  +W L
Sbjct:   205 SDDIEEEDDSSAEEDVPVEYRKLKMDAITLLQWMSLIALVVALVLSLGLHTWRNATLWSL 264

Query:   218 EIWKWCVLVLVIFCGMLVTNWFMHVIVFVIETNFLLRKKVLYFVHGLKKSVQVFIXXXXX 277
              +WKW V++LV+ CG LV+   + +IVF IE NFLLRK+VLYFV+G+K +VQ  +     
Sbjct:   265 HLWKWEVVLLVLICGRLVSGCGIRIIVFFIERNFLLRKRVLYFVYGVKTAVQNCLWLGLV 324

Query:   278 XXXXXXXFNHGVKRSEVATKVLHYITWTLVTFLIGAFXXXXXXXXXXXXASNFHVNRFFD 337
                    F+  V++ E  + VL  ++  LV FL+               AS+FHV+ +FD
Sbjct:   325 LLAWHFLFDKKVEK-ETQSDVLLLMSKILVCFLLSTVLWLIKTLVVKVLASSFHVSTYFD 383

Query:   338 RIQESVFHQYVLQTLSGPPLIEEDERVGRAPSFGQLSIRSNKKGKEAKETKIIDMGKVHK 397
             RIQE++FH Y+++TLSGPP++E   R+       Q  I   +KG      ++        
Sbjct:   384 RIQEALFHHYLIETLSGPPMLELS-RIEEEEDRTQDEIYKMQKGGADLSPELCSAA---- 438

Query:   398 MKQEKVSTWTMKLLVDAIMNSRLSTISNTLDESVNEGEHADMEITNEMELLVEEMNI-LT 456
               QEK  + TM +    I+    S    T+D+ +++    ++   N   L+    N+ L+
Sbjct:   439 FPQEKSGS-TMNMKFSPIIPKTGSDNGITMDD-LHKMNQKNVSAWNMKRLMKIVRNVSLS 496

Query:   457 TI 458
             T+
Sbjct:   497 TL 498

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

DICTYBASE|DDB_G0277253 DDB_G0277253 "mechanosensitive ion channel domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 123 (48.4 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
 Identities = 27/79 (34%), Positives = 44/79 (55%)

Query:   435 EHADMEITNEME-LLVEEMNILTTIFLKLDNEKISYPNSVLATKSISNYNRSPDMGDTVE 493
             E  D  + N++E L V+ + I+ T F  LD + +  PNS L    I N+ RS +    V+
Sbjct:   693 EVGDKVVINQLEGLFVDRIGIVFTSFKSLDGKAVYLPNSTLVMARIENHQRSEEASVGVD 752

Query:   494 FSIAFVTPVERIAMLKEKI 512
              ++ F TPVE++  L+ K+
Sbjct:   753 VTVNFNTPVEKLYFLESKL 771

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.VI.358.1 hypothetical protein (622 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	514
pfam00924	202	pfam00924, MS_channel, Mechanosensitive ion channe	4e-06
COG0668	316	COG0668, MscS, Small-conductance mechanosensitive	2e-05

>gnl|CDD|201506 pfam00924, MS_channel, Mechanosensitive ion channel

 Score = 47.2 bits (113), Expect = 4e-06
 Identities = 18/66 (27%), Positives = 35/66 (53%)

Query: 449 VEEMNILTTIFLKLDNEKISYPNSVLATKSISNYNRSPDMGDTVEFSIAFVTPVERIAML 508
           VE++ I +T     D   ++ PNS + T +I N +RSP     V   +A+ +  +++  +
Sbjct: 74  VEDIGIRSTTIRTFDGRLVTIPNSKILTSNIINLSRSPTRRVEVSIGVAYSSDPKKLEKV 133

Query: 509 KEKIKQ 514
            E +K+
Sbjct: 134 IEILKE 139

Two members of this protein family from M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins. Length = 202

>gnl|CDD|223740 COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 20/67 (29%), Positives = 40/67 (59%), Gaps = 1/67 (1%)

Query: 449 VEEMNILTTIFLKLDNEKISYPNSVLATKSISNYNRSPDMGDTVEFSIAFVTPVER-IAM 507
           VE++ + +T    LD   ++ PNS L T ++ NY+R P     V+  +A+ + +E+ + +
Sbjct: 164 VEDIGLRSTTIRTLDGRIVTIPNSKLFTANVVNYSREPGRRVEVKVGVAYDSDLEKALKI 223

Query: 508 LKEKIKQ 514
           LKE +++
Sbjct: 224 LKEVLEE 230

Length = 316

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	514
KOG4629	714	consensus Predicted mechanosensitive ion channel [	100.0
PF00924	206	MS_channel: Mechanosensitive ion channel; InterPro	99.28
PRK11465	741	putative mechanosensitive channel protein; Provisi	98.73
PRK11281	1113	hypothetical protein; Provisional	98.72
PRK10929	1109	putative mechanosensitive channel protein; Provisi	98.68
PRK10334	286	mechanosensitive channel MscS; Provisional	98.62
COG0668	316	MscS Small-conductance mechanosensitive channel [C	98.51
COG3264	835	Small-conductance mechanosensitive channel [Cell e	97.58
PRK11281	1113	hypothetical protein; Provisional	88.55

>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=2.1e-70  Score=600.59  Aligned_cols=465  Identities=38%  Similarity=0.612  Sum_probs=374.7

Q ss_pred             eeecccCCCCceEEEcCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCcccchhhccccccC
Q 010264           17 ISEKKISNGSEVVIKIASEESPSVSTEKVTNGFESNSVPPVSCPSPEPEGARFTRSHTKPPKIPTTNDAVLIRRRSLARS   96 (514)
Q Consensus        17 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~p~p~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~r~   96 (514)
                      |.|.+.+||.|+.++..+++.++++    |.. +++..+|  .| |+        ++ +|++.|-+.  ...||+++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~l~~~--~~-p~--------~~-~~~~~~~~~--~~~~~~~~~~~   61 (714)
T KOG4629|consen    1 MNEHRRSNGQELSYNVWDEEKSRAS----QIA-ESSLDIE--SP-PN--------SS-SPIFTPVSR--GRVRRRSLPYI   61 (714)
T ss_pred             CCcccccCCCCCccccCCccccccc----hhh-heeccCC--CC-CC--------CC-CCceeeccc--chhhhccccce
Confidence            5678889999999999999777632    222 4555555  34 55        22 677777665  58999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCcccccchhhhhhccCC-CCCCcCCCCCccccCCCCcccccc-CCCCCCCCchhHhhhhhhh
Q 010264           97 VYSKPKSRFGEPSYNDPNMIVEDDDSALSEQLGGN-SLSRTSCNTSKRSISSSRTNSIAT-KMSSIASDDEEEIYNKVEL  174 (514)
Q Consensus        97 ~~skpksr~~e~~~p~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ddde~~~~~~~~  174 (514)
                      .||+++.||.|+-+-.--+..++...... -.... .--++.+| ++ +.-..+.+..+. ..+ -+.|+||++|..+.+
T Consensus        62 ~~~~~~~~~~~~~~~v~~t~~~~~~~~~~-~~~~s~~f~p~~~~-~~-n~~~~~~~~~s~~~a~-~~~~~e~~~~~~~~l  137 (714)
T KOG4629|consen   62 LYSQEELRRTEYGETVRCTSRKMPSMIFF-ASKRSRDFDPAEPN-NR-NRFSNSGETTSGELAP-SEKDEEESIFSEEKL  137 (714)
T ss_pred             ecccccccccCCcceEEeccccChHhhhh-hhhcccccCCCCCC-CC-CcccCccccccccccC-Ccccccccccchhcc
Confidence            99999999999865433333333211111 11111 11133333 11 111011111100 011 223777888999999


Q ss_pred             HHHh-hccCCceehHHHHHHHHHHHHHHhheeccccCCceeehhhHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhhhhHh
Q 010264          175 IKEK-RKRMTPMDLIQWVAFLCNVGCLIVSLTVNKWENFMIWGLEIWKWCVLVLVIFCGMLVTNWFMHVIVFVIETNFLL  253 (514)
Q Consensus       175 ~~~~-~~~~~~~i~iew~~fv~il~lLl~slti~~l~~~~lwgl~LWkW~v~vlVl~~GrlVs~W~v~liv~lIernFll  253 (514)
                      +++. +.+.+++.+++|+.++++++.|+|+|+|+......+|.+..|+|++.+++++||++++.|++.+++|++++||++
T Consensus       138 ~~~~~~~~~~~~~~i~~I~~~~iv~~lv~~l~i~~~~~~~~~~~~~~kw~~~~~v~~~~~lv~~~~~~~vvf~~~~n~~~  217 (714)
T KOG4629|consen  138 PDETRRSLLSSITVITWILLVLIVSSLVCSLGIHVHRLVTLWSLILWKWLVTLLVRITAVLVSSWFAALVVFLIESNFLR  217 (714)
T ss_pred             chhhhhcccccHHHHHHHHHHHHHHHHHhhhhhheecccceEEEEeeeehhhhHHHHHHHHHHhhHHHHHHHHhhhhHHH
Confidence            9776 588999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhheeeeechhhhHHHHHHHH-HHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 010264          254 RKKVLYFVHGLKKSVQVFIWLA-LVLVTWVLLFNHGVKRSEVATKVLHYITWTLVTFLIGAFLWLLKTLSLKILASNFHV  332 (514)
Q Consensus       254 ~kkVLYfv~gLrk~v~~flWl~-lvLiaW~~Lf~~~v~rs~~t~~~l~~V~kvL~~llv~a~l~LlKklLVKlIAsSFH~  332 (514)
                      +++++||++|+++.+|.|+|++ +++++|+.+|+..+.+....+ .+.+++++ +|+++.+++|++|++++|++|++||+
T Consensus       218 r~~~l~~v~~~~~~vq~~~~l~~lv~law~~l~d~~v~~~~r~~-~l~~~~~~-i~lli~~~~~lv~ti~~kv~as~f~~  295 (714)
T KOG4629|consen  218 RKKVLYFVYGLRKFVQTGIWLGKLVLLAWIFLFDKIVFRKTRAK-FLAFVTML-ITLLITEFMWLVKTILMKVIASSFHR  295 (714)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhhhhhhh-hhhhhhhh-hhhhHHHHHhhchhhhhHHHHHHHhH
Confidence            9999999999999999999999 999999999999887766555 78999999 99999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHhcCCCCchhhhhhcCCCCCCCccccccccCCccccccccchhhhhhccccccchHHHHHHH
Q 010264          333 NRFFDRIQESVFHQYVLQTLSGPPLIEEDERVGRAPSFGQLSIRSNKKGKEAKETKIIDMGKVHKMKQEKVSTWTMKLLV  412 (514)
Q Consensus       333 rtYfdRIqeSlf~qyvL~tLSgPpl~e~~e~~g~~~~~G~~s~~~~~~~~~~~~~~~i~~~~l~kl~~~~vSaW~mkrL~  412 (514)
                      ++|++||||++|+||+|++|||||+   +|++|+. +.++..+.+.+...+   ...|+++++|+|++.++|||+|+++|
T Consensus       296 s~~~~rI~e~~f~q~~l~~Lsg~p~---~e~~gr~-s~~~~~~s~~~~r~~---s~~i~~~~l~~~~~~~~sa~~~~~~~  368 (714)
T KOG4629|consen  296 STYFSRIQESVFTQEVLETLSGPPR---EEDVGRE-STFRAIFSPGLSRSG---SAKIGMDKLHKIKKKNVSAWNMRRLM  368 (714)
T ss_pred             HHHHhhcchhhhhHHHHHHhcCCcc---ccccccc-ccceeeccccccchh---hcccccchhhhhhHhhhcHhhhhHHH
Confidence            9999999999999999999999998   4556664 334444443322122   22289999999999999999999999


Q ss_pred             HHHhcCCccccc--------------------------------------------------------------------
Q 010264          413 DAIMNSRLSTIS--------------------------------------------------------------------  424 (514)
Q Consensus       413 ~~Vr~~~LsTls--------------------------------------------------------------------  424 (514)
                      +.++.+++||++                                                                    
T Consensus       369 ~~~~~~~~t~l~~~~~~s~~~~~~~~~i~s~~~a~~aA~~iF~nv~~p~~~~i~ld~~~~f~~~E~a~~~~slfe~~~~~  448 (714)
T KOG4629|consen  369 TILAAGGLTTLSPGFQLSTSKDSSIIEIRSEKEAKIAARKIFKNVAKPGVILIDLDDLLRFMGDEEAERAFSLFEGASDE  448 (714)
T ss_pred             HHHhccCcccCCccccccccccchhhhhhhhhhHHHHHHHHHhccCCCCccchhhhhhhhcCCHHHHHHHHHhhhhhccc
Confidence            998877666554                                                                    


Q ss_pred             --------------------------------------------------------------------------------
Q 010264          425 --------------------------------------------------------------------------------  424 (514)
Q Consensus       425 --------------------------------------------------------------------------------  424 (514)
                                                                                                      
T Consensus       449 ~Itrs~~~~~iv~~~~ERk~L~~tL~d~~taV~kL~~il~~Iv~vv~~~i~lil~~i~~~~~l~~~~sq~v~l~fif~~~  528 (714)
T KOG4629|consen  449 NITRSSFKEWIVNIYRERKALARTLNDTKTAVNKLDRILNFIVAVVLLVIWLILLGINTSKLLLVISSQLVGLAFIFGNI  528 (714)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeeeeeecccceeeeeehhhH
Confidence                                                                                            


Q ss_pred             --hhhhcc---c--CCCCccCeeEeccceeEEeeeeeeeeEEEeecCeEEEeeccccccccccceecCCCCcccEEEEEE
Q 010264          425 --NTLDES---V--NEGEHADMEITNEMELLVEEMNILTTIFLKLDNEKISYPNSVLATKSISNYNRSPDMGDTVEFSIA  497 (514)
Q Consensus       425 --~~l~~~---~--~~~d~gD~~i~~e~e~vVeem~lL~TvF~r~dg~~v~~PNsvL~tk~I~N~~RS~~m~e~~~~~V~  497 (514)
                        +.++++   |  ||||+|||+.+|+.+|+|+|||||+|||.++||++|+|||++|++|+|.|+||||+|+|.++|+|+
T Consensus       529 ~k~~~esiIFlfv~HPyDvGDRv~VDg~~~vVeemnLlsTvF~~~dg~kI~~PNS~L~~k~I~N~rRS~~~~~~v~f~i~  608 (714)
T KOG4629|consen  529 VKELLESIIFLFVMHPYDVGDRVVVDGVNLVVEEMNLLSTVFLRVDGRKIFIPNSVLWTKAISNYRRSPDMGDEVEFLIS  608 (714)
T ss_pred             HHHHHHHHhheeecCCCCCCCeEEEeceEEEEEEeccceEEEEEECCeEEEeecHHHHhhhhhhhhcCccccccEEEEec
Confidence              011222   1  699999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCHHHHHHHHHHHh
Q 010264          498 FVTPVERIAMLKEKIK  513 (514)
Q Consensus       498 ~~Tp~eki~~Lk~~i~  513 (514)
                      ++||+|||+.||+||.
T Consensus       609 ~~T~~~Ki~~Lk~rI~  624 (714)
T KOG4629|consen  609 SSTPFEKIERLKERIA  624 (714)
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999999999986

>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation

Probab=99.28  E-value=3.9e-12  Score=119.98  Aligned_cols=82  Identities=33%  Similarity=0.370  Sum_probs=67.8

Q ss_pred             CCCCccCeeEeccceeEEeeeeeeeeEEEeecCeEEEeeccccccccccceec-CCCCcccEEEEEEecCCHHHHHHHHH
Q 010264          432 NEGEHADMEITNEMELLVEEMNILTTIFLKLDNEKISYPNSVLATKSISNYNR-SPDMGDTVEFSIAFVTPVERIAMLKE  510 (514)
Q Consensus       432 ~~~d~gD~~i~~e~e~vVeem~lL~TvF~r~dg~~v~~PNsvL~tk~I~N~~R-S~~m~e~~~~~V~~~Tp~eki~~Lk~  510 (514)
                      .||++||++.+++.+..|++|++++|.++.+||+.+++||+.|.++.|.|++| ++.++..++|.|+++++.++++.+.+
T Consensus        59 ~pf~vGD~I~i~~~~G~V~~I~l~~t~l~~~~g~~v~IPNs~l~~~~i~N~s~~~~~~~~~v~~~v~~~~~~~~~~~~~~  138 (206)
T PF00924_consen   59 RPFKVGDRIEIGGVEGRVEEIGLRSTRLRTWDGEIVIIPNSKLISSPIVNYSRSSPYRRVVVEIPVDYDTDPEKIEELRE  138 (206)
T ss_dssp             -SS-TT-EEESSS-EEEEEEE-SSEEEEEETTS-EEEEEHHHHHCS-EEETTT-SSEEEEEEEEEE-TTS----HHHHHH
T ss_pred             CCccCCCEEEEEEeehHHHhcCcceeeeecCCCCEEEEEchheeeEEEEEeeccCCceeeeeeeeEecCCCchHHHHHHH
Confidence            39999999999999999999999999999999999999999999999999999 99999999999999999999999888


Q ss_pred             HHh
Q 010264          511 KIK  513 (514)
Q Consensus       511 ~i~  513 (514)
                      ++.
T Consensus       139 ~i~  141 (206)
T PF00924_consen  139 KIE  141 (206)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

They are present in the membranes of organisms from the three domains of life: bacteria, archaea, and eukarya []. There are two families of MS channels: large-conductance MS channels (MscL) and small-conductance MS channels (MscS or YGGB). The pressure threshold for MscS opening is 50% that of MscL []. The MscS family is much larger and more variable in size and sequence than the MscL family. Much of the diversity in MscS proteins occurs in the size of the transmembrane regions, which ranges from three to eleven transmembrane helices, although the three C-terminal helices are conserved. This family contains sequences form the MscS family of proteins. MscS folds as a homo-heptamer with a cylindrical shape, and can be divided into transmembrane and extramembrane regions: an N-terminal periplasmic region, a transmembrane region, and a C-terminal cytoplasmic region (middle and C-terminal domains). The transmembrane region forms a channel through the membrane that opens into a chamber enclosed by the extramembrane portion, the latter connecting to the cytoplasm through distinct portals [].; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 2OAU_E 2VV5_F.

>PRK11465 putative mechanosensitive channel protein; Provisional

Probab=98.73  E-value=1.4e-06  Score=98.66  Aligned_cols=74  Identities=15%  Similarity=0.106  Sum_probs=66.3

Q ss_pred             CCCCccCeeEeccceeEEeeeeeeeeEEEeecCeEEEeeccccccccccceecCCCCcccEEEEEEecCCHHHHHHH
Q 010264          432 NEGEHADMEITNEMELLVEEMNILTTIFLKLDNEKISYPNSVLATKSISNYNRSPDMGDTVEFSIAFVTPVERIAML  508 (514)
Q Consensus       432 ~~~d~gD~~i~~e~e~vVeem~lL~TvF~r~dg~~v~~PNsvL~tk~I~N~~RS~~m~e~~~~~V~~~Tp~eki~~L  508 (514)
                      .||.+||.+.+++.+=.||+|++-+|..+.+||..+++||+.+.+  |.|+.|. .+.-.+++.|+++|..||...+
T Consensus       572 ~pf~vGD~I~v~g~~GtVe~I~lRsT~iRt~dg~~i~IPNs~i~~--v~N~Sr~-~~~~~v~v~V~Y~~Didka~~i  645 (741)
T PRK11465        572 NGMNTGDLVTIGPLTGTVERMSIRSVGVRQDTGAYHIIPWSSITT--FANFVRG-IGSVVANYDVDRHEDADKANQA  645 (741)
T ss_pred             CCcCCCCEEEECCeEEEEEEEeeeEEEEEcCCCCEEEEECCccee--eEEeccC-ceEEEEEEEeCCCCCHHHHHHH
Confidence            499999999999999999999999999999999999999999986  9999987 3356678999999999985544

>PRK11281 hypothetical protein; Provisional

Probab=98.72  E-value=4e-07  Score=106.99  Aligned_cols=77  Identities=17%  Similarity=0.268  Sum_probs=71.8

Q ss_pred             CCCCccCeeEeccceeEEeeeeeeeeEEEeecCeEEEeeccccccccccceecCCC-CcccEEEEEEecCCHHHHHHH
Q 010264          432 NEGEHADMEITNEMELLVEEMNILTTIFLKLDNEKISYPNSVLATKSISNYNRSPD-MGDTVEFSIAFVTPVERIAML  508 (514)
Q Consensus       432 ~~~d~gD~~i~~e~e~vVeem~lL~TvF~r~dg~~v~~PNsvL~tk~I~N~~RS~~-m~e~~~~~V~~~Tp~eki~~L  508 (514)
                      .||.+||.+.+++.+=.|+||++.+|.-+.+||..|++||+.+.+..|.|+.+++. +.-.+++.|.++++.++...+
T Consensus       937 RPfrIGD~I~I~~~~G~V~~I~lRsT~Irt~D~~~ViIPNs~~~t~~IiN~S~~~~~~Rv~i~vgV~Y~sDi~~v~~i 1014 (1113)
T PRK11281        937 RPVRIGDTVTIGTFSGTVSKIRIRATTITDFDRKEVIVPNKAFVTERLINWSLSDTVTRVVIKVGVAYGSDLEKVREL 1014 (1113)
T ss_pred             CCcCCCCEEEECCEEEEEEEEEeEEEEEEcCCCCEEEEechhhhcCceEeCCCCCcceEEEEEEEeCCCCCHHHHHHH
Confidence            39999999999998899999999999999999999999999999999999999986 689999999999999986644

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=98.68  E-value=1.1e-06  Score=103.19  Aligned_cols=77  Identities=16%  Similarity=0.162  Sum_probs=71.4

Q ss_pred             CCCCccCeeEeccceeEEeeeeeeeeEEEeecCeEEEeeccccccccccceecCCC-CcccEEEEEEecCCHHHHHHH
Q 010264          432 NEGEHADMEITNEMELLVEEMNILTTIFLKLDNEKISYPNSVLATKSISNYNRSPD-MGDTVEFSIAFVTPVERIAML  508 (514)
Q Consensus       432 ~~~d~gD~~i~~e~e~vVeem~lL~TvF~r~dg~~v~~PNsvL~tk~I~N~~RS~~-m~e~~~~~V~~~Tp~eki~~L  508 (514)
                      .||.+||.+.+++.+=.|++|++.+|..+.+||..|++||+.+.+..|.|+.+++. +.-.+++.|+++|..++...+
T Consensus       934 rPfrVGD~I~I~~~~GtV~~I~lRsT~Irt~Dg~~IiIPNs~~it~~IiN~S~~d~~~Rv~i~VgV~Y~sDie~v~~i 1011 (1109)
T PRK10929        934 KPIRIGDTVTIRDLTGSVTKINTRATTISDWDRKEIIVPNKAFITEQFINWSLSDSVTRVVLTIPAPADANSEEVTEI 1011 (1109)
T ss_pred             CCCCCCCEEEECCEEEEEEEEeeeEEEEEeCCCCEEEEEChhhhcCceEecCCCCcceEEEEEEEeCCCCCHHHHHHH
Confidence            48999999999999899999999999999999999999999999999999999986 477899999999999987654

>PRK10334 mechanosensitive channel MscS; Provisional

Probab=98.62  E-value=9.5e-08  Score=97.27  Aligned_cols=80  Identities=15%  Similarity=0.228  Sum_probs=74.3

Q ss_pred             CCCCccCeeEeccceeEEeeeeeeeeEEEeecCeEEEeeccccccccccceecCCCCcccEEEEEEecCCHHHHHHHHHH
Q 010264          432 NEGEHADMEITNEMELLVEEMNILTTIFLKLDNEKISYPNSVLATKSISNYNRSPDMGDTVEFSIAFVTPVERIAMLKEK  511 (514)
Q Consensus       432 ~~~d~gD~~i~~e~e~vVeem~lL~TvF~r~dg~~v~~PNsvL~tk~I~N~~RS~~m~e~~~~~V~~~Tp~eki~~Lk~~  511 (514)
                      .||.+||.+.+++.+=.|++|++.+|..+..||..|++||+.+.+..|.|++|.+.....+++.|+++++.++...+=.+
T Consensus       128 rpf~vGD~I~i~~~~G~V~~I~~r~T~i~t~d~~~v~IPNs~~~~~~i~N~s~~~~rr~~~~v~V~y~~d~~~~~~il~~  207 (286)
T PRK10334        128 RPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQVKQILTN  207 (286)
T ss_pred             CCCCCCCEEEECCEEEEEEEEEeEEEEEEcCCCCEEEEcchHhcCCeeEEcCCCCeEEEEEEEEecCCCCHHHHHHHHHH
Confidence            49999999999999999999999999999999999999999999999999999988888999999999999997665433

>COG0668 MscS Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

Probab=98.51  E-value=3.2e-07  Score=91.19  Aligned_cols=81  Identities=23%  Similarity=0.333  Sum_probs=75.5

Q ss_pred             CCCCccCeeEec-cceeEEeeeeeeeeEEEeecCeEEEeeccccccccccceecCCCCcccEEEEEEecCCHHHHHHHHH
Q 010264          432 NEGEHADMEITN-EMELLVEEMNILTTIFLKLDNEKISYPNSVLATKSISNYNRSPDMGDTVEFSIAFVTPVERIAMLKE  510 (514)
Q Consensus       432 ~~~d~gD~~i~~-e~e~vVeem~lL~TvF~r~dg~~v~~PNsvL~tk~I~N~~RS~~m~e~~~~~V~~~Tp~eki~~Lk~  510 (514)
                      +||.+||.+.+. +.+=.|++|++.+|..+.+||..+.+||+.+.+..|.|+.|++.....+++.|.++++.++...+-.
T Consensus       146 ~~f~vGD~I~i~~~~~G~V~~i~~~~T~ir~~dg~~v~iPNs~i~~~~i~N~s~~~~~~~~~~v~v~~~~~~~~~~~i~~  225 (316)
T COG0668         146 RPFKVGDWIEIGSGVEGTVEDIGLRSTTIRTLDGRIVTIPNSKLFTANVVNYSREPGRRVEVKVGVAYDSDLEKALKILK  225 (316)
T ss_pred             cCcCcCCEEEECCCceEEEEEEEEEEEEEEcCCCCEEEccchhhccCceEeCCCCCcEEEEEEEeeccCCCHHHHHHHHH
Confidence            489999999999 6899999999999999999999999999999999999999999988999999999999999777665


Q ss_pred             HH
Q 010264          511 KI  512 (514)
Q Consensus       511 ~i  512 (514)
                      ++
T Consensus       226 ~~  227 (316)
T COG0668         226 EV  227 (316)
T ss_pred             HH
Confidence            44

>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

Probab=97.58  E-value=0.0014  Score=75.28  Aligned_cols=76  Identities=16%  Similarity=0.217  Sum_probs=69.5

Q ss_pred             CCCccCeeEeccceeEEeeeeeeeeEEEeecCeEEEeeccccccccccceecCC-CCcccEEEEEEecCCHHHHHHH
Q 010264          433 EGEHADMEITNEMELLVEEMNILTTIFLKLDNEKISYPNSVLATKSISNYNRSP-DMGDTVEFSIAFVTPVERIAML  508 (514)
Q Consensus       433 ~~d~gD~~i~~e~e~vVeem~lL~TvF~r~dg~~v~~PNsvL~tk~I~N~~RS~-~m~e~~~~~V~~~Tp~eki~~L  508 (514)
                      |+-+||.+-+.+.+=+|.||++=.|+-..+||+.|.+||+.+-|..+.|..=++ ...-.+.+.+.|+|..|+.-.+
T Consensus       660 pvkvGD~It~g~~~G~V~~I~vRAT~I~~fd~~~vIVPNs~fI~~qV~NWs~~~~~~R~~i~v~vay~sD~~~V~~~  736 (835)
T COG3264         660 PVKVGDTVTIGTVSGTVRKISVRATTIRTFDRKEVIVPNSAFITEQVINWSLRDTTTRLVIPVGVAYGSDPELVREL  736 (835)
T ss_pred             CcccCCEEEECCceEEEEEEEeeEEEEEeCCCCeEEeccHHHHhhheeeeeccCceEEEEEEecccCCCCHHHHHHH
Confidence            899999999999999999999999999999999999999999999999997776 4557899999999999986544

>PRK11281 hypothetical protein; Provisional

Probab=88.55  E-value=1.5  Score=53.02  Aligned_cols=96  Identities=10%  Similarity=0.227  Sum_probs=48.8

Q ss_pred             ehHHHHHHHHHHHHHHhhe--eccccCCceeehh-------------hHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhhh
Q 010264          186 DLIQWVAFLCNVGCLIVSL--TVNKWENFMIWGL-------------EIWKWCVLVLVIFCGMLVTNWFMHVIVFVIETN  250 (514)
Q Consensus       186 i~iew~~fv~il~lLl~sl--ti~~l~~~~lwgl-------------~LWkW~v~vlVl~~GrlVs~W~v~liv~lIern  250 (514)
                      -++.|++|++.+-.++.-+  .++.+.+.++|+.             .++.-...+++++.+++++.++.+++-.++...
T Consensus       788 ~~~~~~~~~~~~~~~w~~~~~~~~~l~~i~l~~~~~~~~~~~~~~~itl~~Ll~allIl~i~~~l~r~l~~ll~~~~~~r  867 (1113)
T PRK11281        788 DLLLFALFFVMFYWVWSDLITVFSYLDSITLWHYTTTTAGGAVVESITLGNLLFALIILVVTYVLVRNLPGLLEVLVLSR  867 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhccccccccceeeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3444444444333333111  3456668887754             355555555555555655555444333222222


Q ss_pred             hHhhhhheeeeechhhhHHHHHHHHHHHHHHHHH
Q 010264          251 FLLRKKVLYFVHGLKKSVQVFIWLALVLVTWVLL  284 (514)
Q Consensus       251 Fll~kkVLYfv~gLrk~v~~flWl~lvLiaW~~L  284 (514)
                      +.+.....|+   +.+-+..++|++++++++..+
T Consensus       868 l~l~~~~~~~---i~~li~y~I~~i~iliaL~~l  898 (1113)
T PRK11281        868 LNLRQGTSYA---ITTLLTYIIIAVGAVTAFSTL  898 (1113)
T ss_pred             ccCCchHHHH---HHHHHHHHHHHHHHHHHHHHc
Confidence            2222333333   456667778888887777654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	514
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
2vv5_A	286	MSCS, small-conductance mechanosensitive channel;	2e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 6e-06
 Identities = 79/552 (14%), Positives = 143/552 (25%), Gaps = 192/552 (34%)

Query: 89  RRRSLARSVYSKPKSRFGEPSYNDPNMIVEDD----------DSALSEQ----------L 128
           R+ S+   +Y + + R     YND  +  + +            AL E           +
Sbjct: 103 RQPSMMTRMYIEQRDRL----YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158

Query: 129 GG---NSLSRTSCNTSKRS---------ISSSRTNS-------------IATKMSSIASD 163
            G     ++   C + K           ++    NS                   +  SD
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 164 DEEEIYNKVELIKEKRKRMTPMDLIQWVAFLCNVGCLIVSLTVNKWENFMIWGLEIWKWC 223
               I  ++  I+ + +R     L++   +     CL+V L      N  +   + W   
Sbjct: 219 HSSNIKLRIHSIQAELRR-----LLKSKPY---ENCLLV-L-----LN--VQNAKAWN-- 260

Query: 224 VLVLVIFCGMLVTNWFMHVIVFVIETNFLLRKKVLYFVH---GL--KKSVQVFIWLALVL 278
                + C +L+T  F  V  F+           +   H    L   +   +       L
Sbjct: 261 --AFNLSCKILLTTRFKQVTDFLSAA----TTTHISLDHHSMTLTPDEVKSLL---LKYL 311

Query: 279 VTWVLLFNHGVKR-SEVATKVLHYITWTLVTFLIGAFL------W----------LLKTL 321
                  +   +                    +I   +      W          L   +
Sbjct: 312 -------DCRPQDLPREVLTTN-----PRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 322 --SLKILASNFHVNRFFD--------RIQESVFH-----------QYVLQTLSGPPLIEE 360
             SL +L    +   F           I   +               V+  L    L+E+
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419

Query: 361 D--ERVGRAPSFGQLSIRSNKKGKEAKETKIIDMGKVHKMKQEKVSTWTMKLLVDAIMNS 418
              E     PS   L ++   + + A    I+D    H    +   +    L+   +   
Sbjct: 420 QPKESTISIPSI-YLELKVKLENEYALHRSIVD----HYNIPKTFDSD--DLIPPYLDQY 472

Query: 419 RLSTISNTLDESVNEGEHADMEITNEMELLVEEMNILTTIFLKLD--NEKISY------- 469
             S I          G H       E     E M +   +FL      +KI +       
Sbjct: 473 FYSHI----------GHHLK---NIEHP---ERMTLFRMVFLDFRFLEQKIRHDSTAWNA 516

Query: 470 PNSVLAT--------KSISNYNRSPDM--GDTVEFS-----------------IAFVTPV 502
             S+L T          I + +   +      ++F                  IA +   
Sbjct: 517 SGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAED 576

Query: 503 ERIAMLKEKIKQ 514
           E I     K  Q
Sbjct: 577 EAIFEEAHKQVQ 588

>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A Length = 286

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 449 VEEMNILTTIFLKLDNEKISYPNSVLATKSISNYNRSPDMGDTVEFSIAFVTPVER-IAM 507
           V  + I +T     D + I  PN  +   +I N++R P   +     +A+ + +++   +
Sbjct: 145 VLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQVKQI 204

Query: 508 LKEKIKQ 514
           L   I+ 
Sbjct: 205 LTNIIQS 211

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	514
2vv5_A	286	MSCS, small-conductance mechanosensitive channel;	99.01
3udc_A	285	Small-conductance mechanosensitive channel, C-TER	98.56

>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A

Probab=99.01  E-value=2.3e-10  Score=113.88  Aligned_cols=77  Identities=16%  Similarity=0.242  Sum_probs=73.0

Q ss_pred             CCCCccCeeEeccceeEEeeeeeeeeEEEeecCeEEEeeccccccccccceecCCCCcccEEEEEEecCCHHHHHHH
Q 010264          432 NEGEHADMEITNEMELLVEEMNILTTIFLKLDNEKISYPNSVLATKSISNYNRSPDMGDTVEFSIAFVTPVERIAML  508 (514)
Q Consensus       432 ~~~d~gD~~i~~e~e~vVeem~lL~TvF~r~dg~~v~~PNsvL~tk~I~N~~RS~~m~e~~~~~V~~~Tp~eki~~L  508 (514)
                      +||.+||++.+++.+-.|+||++.+|.++.+||+.+++||+.+.+.+|.|++|++.+...+++.|+++|+.+++.++
T Consensus       128 ~pf~vGD~I~i~g~~G~V~~I~l~~T~i~t~dg~~v~IPNs~l~~~~i~N~s~~~~~r~~~~v~v~y~~d~~~v~~~  204 (286)
T 2vv5_A          128 RPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQVKQI  204 (286)
T ss_dssp             CSSCTTCEEESSSCEEEEEEECSSEEEEECTTSCEEEEEHHHHHTSCEEESSSSSEEEEEEEEEECTTSCHHHHHHH
T ss_pred             CCccCCCEEEECCEEEEEEEEEeEEEEEEeCCCCEEEechHHHhhCceEECCCCCcEEEEEEEEEcCCCCHHHHHHH
Confidence            49999999999999999999999999999999999999999999999999999998888899999999999997654

>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*

Probab=98.56  E-value=1.2e-07  Score=94.24  Aligned_cols=72  Identities=18%  Similarity=0.229  Sum_probs=65.4

Q ss_pred             CCCCccCeeEeccceeEEeeeeeeeeEEEeecCeEEEeeccccccccccceecCCCCcccEEEEEEecCCHHHHH
Q 010264          432 NEGEHADMEITNEMELLVEEMNILTTIFLKLDNEKISYPNSVLATKSISNYNRSPDMGDTVEFSIAFVTPVERIA  506 (514)
Q Consensus       432 ~~~d~gD~~i~~e~e~vVeem~lL~TvF~r~dg~~v~~PNsvL~tk~I~N~~RS~~m~e~~~~~V~~~Tp~eki~  506 (514)
                      .||.+||++.+++.+-.|+||++.+|..+.+||..+++||+.++  .|.|++|+. +...+++.|+++++.++..
T Consensus       127 ~pf~vGD~I~i~~~~G~V~~I~l~~T~i~t~d~~~v~iPN~~l~--~i~N~s~~~-~~~~~~v~v~~~~d~~~v~  198 (285)
T 3udc_A          127 DQFSVGDYVTINGISGTVEEIGLRVTKIRGFSDGLHIIPNGEIK--MVTNLTKDS-MMAVVNIAFPIDEDVDKII  198 (285)
T ss_dssp             TSCCTTCEEEETTEEEEEEEECSSEEEEEETTTEEEEEEGGGCS--CEEECSSSC-EEEEEEEEEETTSCHHHHH
T ss_pred             CCccCCCEEEECCEEEEEEEeeeeEEEEecCCCCEEEecccccc--cccccCCCC-ceEEEEEeeecCCCHHHHH
Confidence            49999999999999999999999999999999999999999994  599999976 5556999999999999854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	514
d2vv5a1	67	b.38.1.3 (A:113-179) Mechanosensitive channel prot	4e-05

>d2vv5a1 b.38.1.3 (A:113-179) Mechanosensitive channel protein MscS (YggB), middle domain {Escherichia coli [TaxId: 562]} Length = 67

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Mechanosensitive channel protein MscS (YggB), middle domain
domain: Mechanosensitive channel protein MscS (YggB), middle domain
species: Escherichia coli [TaxId: 562]

 Score = 39.7 bits (93), Expect = 4e-05
 Identities = 9/45 (20%), Positives = 17/45 (37%)

Query: 438 DMEITNEMELLVEEMNILTTIFLKLDNEKISYPNSVLATKSISNY 482
           +      +   V  + I +T     D + I  PN  +   +I N+
Sbjct: 22  EYVDLGGVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINF 66

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	514
d2vv5a1	67	Mechanosensitive channel protein MscS (YggB), midd	98.73

>d2vv5a1 b.38.1.3 (A:113-179) Mechanosensitive channel protein MscS (YggB), middle domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Mechanosensitive channel protein MscS (YggB), middle domain
domain: Mechanosensitive channel protein MscS (YggB), middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=2.8e-09  Score=83.49  Aligned_cols=52  Identities=17%  Similarity=0.178  Sum_probs=50.1

Q ss_pred             CCCCccCeeEeccceeEEeeeeeeeeEEEeecCeEEEeecccccccccccee
Q 010264          432 NEGEHADMEITNEMELLVEEMNILTTIFLKLDNEKISYPNSVLATKSISNYN  483 (514)
Q Consensus       432 ~~~d~gD~~i~~e~e~vVeem~lL~TvF~r~dg~~v~~PNsvL~tk~I~N~~  483 (514)
                      .||.+||++.+++.+-.|+||++.+|..+..||+.+++||+.+.+.+|.|+.
T Consensus        16 ~pf~vGD~I~i~~~~G~V~~I~l~~T~l~~~dg~~i~iPN~~~~~~~i~N~S   67 (67)
T d2vv5a1          16 RPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFS   67 (67)
T ss_dssp             CSSCTTCEEESSSCEEEEEEECSSEEEEECTTSCEEEEEHHHHHTSCEEESS
T ss_pred             CCccCCCEEEECCEEEEEEEEeceEEEEEccCCCEEEEECHHHcCCccEECc
Confidence            4999999999999999999999999999999999999999999999999974