Citrus Sinensis ID: 010280

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510----
Protein Sequence
MKLIGPHHNRKKDGSNSNSARTSPSRLDDSEFVRNSLLNGGFDDEAPSLEVASEKGAGEVVLGHNQGEQASFQPNETLPRENTEVSRVKMQQFSKGDSVNLSAIHPMRMHEDDNLDYDSNASSSSFEFHKGERSMQNHMARSFSRPMPSKWNDAEKWIMNRQIIQANYAKKNALHNQANRLPATNMVRVVPEYGTYDHKPSTVRAADTKRVDFCQTASHTLEKFSFVPSGTHQAHGGNAMIDSCTQSKDLEEVIQTDVPCTKSSSENESVVPAIRSVCMRDMGTEMTPVASQEPSRTATPVGATTPLRSPTSSIPSTPRGRAPASTPMEQTGIDESQHPVENSKRDLSEQEIKEKTRREIVALGVQLGKMNIAAWASKDEQGKNTSSAEKNSDMEELERIEYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYIRQTGQIPSSHFTCCGWF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHccccccEEEEEcccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccEEEHHHHcccHHHcccccccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
mkligphhnrkkdgsnsnsartspsrlddsEFVRNSllnggfddeapslevasekgagevvlghnqgeqasfqpnetlprentEVSRVKMqqfskgdsvnlsaihpmrmheddnldydsnassssfefhkgersmqnhmarsfsrpmpskwndAEKWIMNRQIIQANYAKKNALhnqanrlpatnmvrvvpeygtydhkpstvraadtkrvdfcqtashtlekfsfvpsgthqahggnamidsctqskdleeviqtdvpctksssenesvvPAIRSVCMrdmgtemtpvasqepsrtatpvgattplrsptssipstprgrapastpmeqtgidesqhpvenskrdlSEQEIKEKTRREIVALGVQLGKMNIAawaskdeqgkntssaeknsdmEELERIEYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGeyirqtgqipsshftccgwf
Flexible Loop (DISEMBL)
mkligphhnrkkdgsnsnsartspsrlddsEFVRNSLLNGGFDDEAPSLEVASEKGAGEVVLGHnqgeqasfqpnetlprENTEVSRVKmqqfskgdsvnlsaIHPMRMHEDDNLDYDSNASSSSFEFHKGERSMQNHMARSFSRPMPSKWNDAEKWIMNRQIIQANYAKKNALHnqanrlpatnMVRVVPEYGTYDHKPSTVRAADTKRVDFCQTASHTLEKFSFVPSGTHQAHGGNAMIDSCTQSKDLEEVIQTdvpctksssenesvvpAIRSVCMRDMGTEmtpvasqepsrtatpvgattplrsptssipstprgraPASTPmeqtgidesqhpvenskrdlseqeikekTRREIVALGVQLGKMNIaawaskdeqgkntssaeknsdmeelERIEYEKRASAWAeaekskhiarfkreeikiqaWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMvkkismsrqrseeKRAAAearksrdaertaaqgeyirqtgqipsshFTCCGWF
Low Complexity Region (SEG)
MKLIGPHHNRKKDGSNSNSARTSPSRLDDSEFVRNSLLNGGFDDEAPSLEVASEKGAGEVVLGHNQGEQASFQPNETLPRENTEVSRVKMQQFSKGDSVNLSAIHPMRMHEDDNLDYDSNASSSSFEFHKGERSMQNHMARSFSRPMPSKWNDAEKWIMNRQIIQANYAKKNALHNQANRLPATNMVRVVPEYGTYDHKPSTVRAADTKRVDFCQTASHTLEKFSFVPSGTHQAHGGNAMIDSCTQSKDLEEVIQTDVPCTKSSSENESVVPAIRSVCMRDMGTEMTPVASQEPSRTATPVGAttplrsptssipstpRGRAPASTPMEQTGIDESQHPVENSKRDLSEQEIKEKTRREIVALGVQLGKMNIAAWASKDEQGKNTSSAEKNSDMEELERIEYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQrseekraaaearksrdaerTAAQGEYIRQTGQIPSSHFTCCGWF
Disordered region (IsUnstruct)
********************************************************************************************************************************************************DAEKWIMNRQIIQANYAKKNALHNQANRLPATNMVRVVPEYGTYDHKPSTVRAADTKRVDFCQTASHTLEKFSFVP**********************************************************************************************************************************EIVALGVQLGKMNIAAW**********************************************************************************************************************************SHFTCCGW*
Disordered Region (DISOPRED)
******************************************************************************************************************************************************WNDAEKW***********************************************************************************************************************************************************************************************************************************************************WA**EKSKH**RFKREEIKIQAWES****************************************************************RQTGQIPSSHFTCCGWF
Disordered Region (DISEMBL)
****************************DSEFVRNSLLNGGFDDEAPSLEVASEKGAGEVVLGHNQGEQASFQPNETLPRENTEVSRVKMQQFSKGDSVNLSAIHPMRMHEDDNLDYDSNASSSSFEFHKGERSMQNHMARSFSRPMPSKWNDAEKWIMNRQIIQANYAKKNALHNQANRLPATNMVRVVPEYGTYDHKPSTVRAADTKRVDFCQTASHTLEKFSFVPSGTHQAHGGNAMIDSCTQSKDLEEVIQTDV***********VVPAIRSVCMRDMGTE******************************************************************IKEKTRREIVALGVQLGKMNIAAWASK*****************ELERIEYEK***********KHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQI***************************************QGEYIRQTGQIPSSHFTCCGWF
Disordered Region (DISPRO)
********N*KKD***************DSEFVR*SLLNG*********************************************SRVKMQQFS*****************************************************PSKWNDAEKWIMNR**************************************************************************************************************PAIRSVCMRDMGTEMTPV*********************************************************LSEQEIKEKTRREIVALGVQLGKMNIAAWASK****************EELERIEYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAE*******ERTA**GEYI**T*QIPSSHFTCCGWF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKLIGPHHNRKKDGSNSNSARTSPSRLDDSEFVRNSLLNGGFDDEAPSLEVASEKGAGEVVLGHNQGEQASFQPNETLPRENTEVSRVKMQQFSKGDSVNLSAIHPMRMHEDDNLDYDSNASSSSFEFHKGERSMQNHMARSFSRPMPSKWNDAEKWIMNRQIIQANYAKKNALHNQANRLPATNMVRVVPEYGTYDHKPSTVRAADTKRVDFCQTASHTLEKFSFVPSGTHQAHGGNAMIDSCTQSKDLEEVIQTDVPCTKSSSENESVVPAIRSVCMRDMGTEMTPVASQEPSRTATPVGATTPLRSPTSSIPSTPRGRAPASTPMEQTGIDESQHPVENSKRDLSEQEIKEKTRREIVALGVQLGKMNIAAWASKDEQGKNTSSAEKNSDMEELERIEYEKRASAWAEAEKSKHIARFKREEIKIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYIRQTGQIPSSHFTCCGWF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	514	2.2.26 [Sep-21-2011]
P93788	198	Remorin OS=Solanum tubero	N/A	no	0.223	0.580	0.363	3e-09
Q9M2D8	212	Uncharacterized protein A	no	no	0.217	0.528	0.354	2e-08
O80837	190	Remorin OS=Arabidopsis th	no	no	0.249	0.673	0.335	2e-08

>sp|P93788|REMO_SOLTU Remorin OS=Solanum tuberosum PE=1 SV=1

 Score = 63.9 bits (154), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 68/121 (56%), Gaps = 6/121 (4%)

Query: 397 LERIEYEKRAS---AWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQI 453
           L R+  EKR S   AW E+EKSK   + +++   I AWE+ +KA LEAE++++E ++E+ 
Sbjct: 81  LARVATEKRVSLIKAWEESEKSKAENKAQKKVSAIGAWENSKKANLEAELKKMEEQLEKK 140

Query: 454 RAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYIRQTGQIPSSHFTCCGW 513
           +A+   KM  KI++  + +EEKRA  EA++  D  +        R TG  P       G 
Sbjct: 141 KAEYTEKMKNKIALLHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGTAPKK---ILGI 197

Query: 514 F 514
           F
Sbjct: 198 F 198

Binds to both simple and complex galacturonides. May be involved in cell-to-cell signaling and molecular transport.
Solanum tuberosum (taxid: 4113)

>sp|Q9M2D8|Y3126_ARATH Uncharacterized protein At3g61260 OS=Arabidopsis thaliana GN=At3g61260 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 74/124 (59%), Gaps = 12/124 (9%)

Query: 397 LERIEYEKRAS---AWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQI 453
           L  +  EKR S   AW E+EKSK   + +++   + AWE+ +KA +EA++++IE ++E+ 
Sbjct: 95  LADLSKEKRLSFVRAWEESEKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIEEQLEKK 154

Query: 454 RAQAQAKMVKKISMSRQRSEEKRAAAEARKSRD---AERTAAQGEYIRQTGQIPSSHFTC 510
           +A+   +M  K++   + +EE+RA  EA++  D   AE TAA+    R TG +P +    
Sbjct: 155 KAEYAERMKNKVAAIHKEAEERRAMIEAKRGEDVLKAEETAAK---YRATGIVPKA---T 208

Query: 511 CGWF 514
           CG F
Sbjct: 209 CGCF 212

Arabidopsis thaliana (taxid: 3702)

>sp|O80837|REMO_ARATH Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1

 Score = 60.8 bits (146), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 77/131 (58%), Gaps = 3/131 (2%)

Query: 384 NTSSAEKNSDMEELERIEYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEM 443
           ++ SA+++  + +LE+ +      AW E+EKSK   R +++   + AWE+ +KA +EA++
Sbjct: 63  SSGSADRDVILADLEKEKKTSFIKAWEESEKSKAENRAQKKISDVHAWENSKKAAVEAQL 122

Query: 444 RRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYIRQTGQI 503
           R+IE ++E+ +AQ   KM  K++   + +EEKRA  EA+K  +  +    G   R TG +
Sbjct: 123 RKIEEKLEKKKAQYGEKMKNKVAAIHKLAEEKRAMVEAKKGEELLKAEEMGAKYRATGVV 182

Query: 504 PSSHFTCCGWF 514
           P +    CG F
Sbjct: 183 PKA---TCGCF 190

Exhibits a non sequence-specific DNA-binding activity.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	514
441481999	541	remorin-3 protein [Dimocarpus longan]	0.996	0.946	0.768	0.0
255584507	535	DNA binding protein, putative [Ricinus c	0.982	0.943	0.697	0.0
356525106	540	PREDICTED: uncharacterized protein LOC10	0.992	0.944	0.671	0.0
225443950	526	PREDICTED: uncharacterized protein LOC10	0.972	0.950	0.678	0.0
356512331	540	PREDICTED: uncharacterized protein LOC10	0.992	0.944	0.667	0.0
147838010	585	hypothetical protein VITISV_036630 [Viti	0.972	0.854	0.676	0.0
356526393	540	PREDICTED: uncharacterized protein LOC10	0.992	0.944	0.667	0.0
224061059	528	predicted protein [Populus trichocarpa]	0.966	0.941	0.628	1e-177
449433601	537	PREDICTED: uncharacterized protein LOC10	0.988	0.945	0.625	1e-168
15220725	509	Remorin family protein [Arabidopsis thal	0.904	0.913	0.551	1e-141

>gi|441481999|gb|AGC39094.1| remorin-3 protein [Dimocarpus longan]

 Score =  792 bits (2046), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/522 (76%), Positives = 451/522 (86%), Gaps = 10/522 (1%)

Query: 1   MKLIGPHHNRKKDGSNSNSARTSPSRLDDSEFVRNSLL--NGG-FDDE--APSLEVASEK 55
           MKLIGPH NRKK+GSNSNS+RTSP++LDDSEFVRNSLL  NGG FD+E  APSL+VASEK
Sbjct: 21  MKLIGPH-NRKKEGSNSNSSRTSPAKLDDSEFVRNSLLASNGGDFDEEVAAPSLDVASEK 79

Query: 56  GAGEVVLGHNQG-EQASFQPNETLPRENTEVSRVKMQQFSKGDSVNLSAIHPMRMHEDDN 114
              EVVL +NQG +QAS Q  E +PRE+ +V R KMQ F K DS N +AIHPMR+ ED+N
Sbjct: 80  AGREVVLDNNQGGDQASCQLKEAMPRESADVGRSKMQ-FLKVDSGNSNAIHPMRVFEDEN 138

Query: 115 LDYDSNASSSSFEFHKGERSMQNHMARSFSRPMPSKWNDAEKWIMNRQIIQANYAKKNAL 174
           LDYDSNASSSSFEFHKGERS+ N +ARSFSRPMPSKWNDAEKWIMN+Q  QAN+ KK AL
Sbjct: 139 LDYDSNASSSSFEFHKGERSVHNSIARSFSRPMPSKWNDAEKWIMNKQNAQANHPKKIAL 198

Query: 175 HNQANRLPATNMVRVVPEYGTYDHKPSTVRAADTKRVDFCQTASH-TLEKFSFVPSGTHQ 233
           +NQ NRLP TNMVRVVPE+ TYDHKPS  RAADTKRVDFCQ  S    EKFSF+P GTHQ
Sbjct: 199 YNQTNRLPQTNMVRVVPEHVTYDHKPSMARAADTKRVDFCQPVSQGAFEKFSFIPPGTHQ 258

Query: 234 AHGGNAMIDSCTQSKDLEEVIQTDVPCTKSSSENESVVPAIRSVCMRDMGTEMTPVASQE 293
           A+GGNA++D+ TQSKD ++V Q D+ CTK S+E+ SVVPAIRSV MRDMGTEMTPVASQE
Sbjct: 259 AYGGNALVDTYTQSKDTKDVGQQDLSCTKISTEDTSVVPAIRSVSMRDMGTEMTPVASQE 318

Query: 294 PSRTATPVGATTPLRSPTSSIPSTPRGRAPASTPMEQTGIDESQHPVENSKRDLSEQEIK 353
           PSRTATPVGATTPLRSP SSIPSTPR  APASTP++ T  DESQ PVEN +R L++QE+K
Sbjct: 319 PSRTATPVGATTPLRSPASSIPSTPRRGAPASTPVDNTTDDESQCPVENIRRVLTDQEMK 378

Query: 354 EKTRREIVALGVQLGKMNIAAWASKDEQ-GKNTSSAEKNSDMEELERIEYEKRASAWAEA 412
           EKTRREIVALGVQLGKMNIAAWASK+EQ  KN + + +  DMEELERIEYE RA+AW EA
Sbjct: 379 EKTRREIVALGVQLGKMNIAAWASKEEQENKNDNPSAETVDMEELERIEYENRAAAWEEA 438

Query: 413 EKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRS 472
           EKSKH ARFKREEIKIQAWESRQKAKLEAEM+RIEAEVEQ+RAQAQAKMVKKI+M+RQ+S
Sbjct: 439 EKSKHTARFKREEIKIQAWESRQKAKLEAEMQRIEAEVEQMRAQAQAKMVKKIAMARQKS 498

Query: 473 EEKRAAAEARKSRDAERTAAQGEYIRQTGQIPSSHFTCCGWF 514
           EEKRAAA+ARK+RDAERTAAQ EYIRQTG++PSSHFTCCGW 
Sbjct: 499 EEKRAAADARKNRDAERTAAQAEYIRQTGRMPSSHFTCCGWL 540

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584507|ref|XP_002532982.1| DNA binding protein, putative [Ricinus communis] gi|223527246|gb|EEF29406.1| DNA binding protein, putative [Ricinus communis]

 Score =  721 bits (1860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/523 (69%), Positives = 425/523 (81%), Gaps = 18/523 (3%)

Query: 1   MKLIGPHHNRKKDGSNSNSARTSPSRLDDSEFVRNSLLNGGFDDE--APSLEVASEKGAG 58
           MKL+GPHHNRKKDGSN NS+RTSPSRL+D+EFV+NSLL    D+E  APSL+++   GA 
Sbjct: 21  MKLLGPHHNRKKDGSNCNSSRTSPSRLEDTEFVKNSLLASN-DEEVAAPSLDLSVPDGA- 78

Query: 59  EVVLGHNQGEQASFQPNETLPRENTEVSRVKMQQFSKGDSVNLSAIHPMRMHEDDNLDYD 118
             V+  +Q +Q S Q  +TL +EN  + R KMQQF+KG+S N SA+HPMR  EDDNLDYD
Sbjct: 79  --VVDPSQVDQTSSQLKDTLSKENGNMGRFKMQQFTKGESANSSAVHPMRSLEDDNLDYD 136

Query: 119 SNASSSSFEFHKGERSMQNHMARSFSRPMPSKWNDAEKWIMNRQIIQANYAKKNALHNQA 178
           SNASSSSFEFHK ER+  N   RSFSRPMPSKWNDAEKWIMNRQ ++ N++KKNA++NQA
Sbjct: 137 SNASSSSFEFHK-ERAAHNQFTRSFSRPMPSKWNDAEKWIMNRQNMRPNFSKKNAVYNQA 195

Query: 179 NRLPATNMVRVVPEYGTYDHKPSTVRAADTKRVDFCQTASH-TLEKFSFV----PSGTHQ 233
           NR+P TNMVRV PE   +D K S  R  DTKRVDFCQ AS   LEKFSF+    PS + Q
Sbjct: 196 NRMPGTNMVRVAPESVNHDLKLSLSRVVDTKRVDFCQPASQMALEKFSFISPGTPSVSGQ 255

Query: 234 AHGGNAMIDSCTQSKDLEEVIQTDVPCTKSSSENESVVPAIRSVCMRDMGTEMTPVASQE 293
           A+GGN +ID CTQSKDL EV Q ++  T+SS E+ +V+P IRSVCMRDMGTEMTP+ASQE
Sbjct: 256 AYGGNVLIDQCTQSKDLREVDQRELAITRSSVEDTAVLPVIRSVCMRDMGTEMTPIASQE 315

Query: 294 PSRTATPVGATTP--LRSPTSSIPSTPRGRAPASTPMEQTGIDESQHPVENSKRDLSEQE 351
           PSRT TPVG+TTP  LRSPTSSIPSTPR  APA TPME    ++++   EN K++L+EQE
Sbjct: 316 PSRTGTPVGSTTPHDLRSPTSSIPSTPRRGAPAPTPMEHGTDEDAESTCENGKKELTEQE 375

Query: 352 IKEKTRREIVALGVQLGKMNIAAWASKDEQGKNTSSAEKNSDMEELERIEYEKRASAWAE 411
            K KTRREIVALGVQLGKMNIAAWASK++Q KNTSS     D EELERIE+EKRA+AW E
Sbjct: 376 FKLKTRREIVALGVQLGKMNIAAWASKEDQDKNTSSV----DAEELERIEFEKRAAAWEE 431

Query: 412 AEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQR 471
           AEKSKH AR+KREEIKIQAWES+QKAKLEAEMRRIEA VEQ+RAQAQAKMVKKI+M+RQ+
Sbjct: 432 AEKSKHTARYKREEIKIQAWESQQKAKLEAEMRRIEARVEQMRAQAQAKMVKKIAMARQK 491

Query: 472 SEEKRAAAEARKSRDAERTAAQGEYIRQTGQIPSSHFTCCGWF 514
           SEEKRA AEARK+RDAERTAAQ EYIRQTG++PSSH+ CCGW 
Sbjct: 492 SEEKRATAEARKNRDAERTAAQAEYIRQTGRMPSSHYICCGWL 534

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525106|ref|XP_003531168.1| PREDICTED: uncharacterized protein LOC100805128 [Glycine max]

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/524 (67%), Positives = 417/524 (79%), Gaps = 14/524 (2%)

Query: 1   MKLIGPHHNRKKDGSNSNSARTSPSRLDDSEFVRNSLL---NGGFDDE--APSLEVASEK 55
           MKL+GP H+RKKDGSNSNS+RTSPSR++D+EFV NSLL   N   DDE  +PSL+V S K
Sbjct: 21  MKLLGPLHHRKKDGSNSNSSRTSPSRIEDAEFV-NSLLGSKNDNLDDEVTSPSLDVLSLK 79

Query: 56  GAGEVVLGHNQGEQASFQPNETLPRENTEVSRVKMQQFSKGDSVNLSAIHPMRMHEDDNL 115
            + + VL   Q  Q S++P ET+P+EN++  RVKMQ F K D+ + SAIH +R  ED+NL
Sbjct: 80  PSSDAVLDRRQNGQISYEPKETMPKENSDTGRVKMQHFQKVDTGSSSAIHAVRAIEDENL 139

Query: 116 DYDSNASSSSFEFHKGERSMQNHMARSFSRPMPSKWNDAEKWIMNRQIIQANYAKKNALH 175
           DYDSNASSSSFEF KGER   N   RS  RP+PSKWNDAEKWIMNRQ IQAN++KKN  H
Sbjct: 140 DYDSNASSSSFEFDKGERPGNNPATRSLFRPIPSKWNDAEKWIMNRQNIQANHSKKNTAH 199

Query: 176 NQANRLPATNMVRVVPEYGTYDHKPSTVRAADTKRVDFCQTASHT-LEKFSFVPSGTH-- 232
           NQANR+P TNM RV PE G YDHK    +A +TKRVD CQ  SH   EKFSFVPS  H  
Sbjct: 200 NQANRMP-TNMGRVAPESGNYDHKLPIGKATETKRVDICQPTSHMGFEKFSFVPSDAHSV 258

Query: 233 --QAHGGNAMIDSCTQSKDLEEVIQTDVPCTKSSSENESVVPAIRSVCMRDMGTEMTPVA 290
             QAHG N +++S  QSKDL++V +  + C++S+ +++SV+P IRSV MRDMGTEMTPV 
Sbjct: 259 SGQAHGRNPVVESLPQSKDLKDVNELGLCCSRST-DDQSVMPGIRSVAMRDMGTEMTPVP 317

Query: 291 SQEPSRTATPVGATTPLRSPTSSIPSTPRGRAPASTPMEQTGIDESQHPVENSKRDLSEQ 350
           SQEPSRTATPVG+ TPLRSP SS+PSTPR  APA TP++ T  ++SQ PVEN KR LSE+
Sbjct: 318 SQEPSRTATPVGSATPLRSPVSSMPSTPRRGAPAPTPLDNTTNEDSQFPVENGKRHLSEE 377

Query: 351 EIKEKTRREIVALGVQLGKMNIAAWASKDEQGKNTSSAEKNSDMEELERIEYEKRASAWA 410
           E+K KTRREI ALGVQLGKMNIAAWASKDEQ KN SS  ++  ++E ERIE+EKRA+ W 
Sbjct: 378 EMKIKTRREIAALGVQLGKMNIAAWASKDEQEKNKSSP-RDMSVQEQERIEFEKRAALWE 436

Query: 411 EAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQ 470
           EAEKSKH ARFKREEIKIQAWES+QKAKLEAEMRRIEA+VEQ+RAQ  AKMVKKI+M+RQ
Sbjct: 437 EAEKSKHTARFKREEIKIQAWESQQKAKLEAEMRRIEAKVEQMRAQTHAKMVKKIAMARQ 496

Query: 471 RSEEKRAAAEARKSRDAERTAAQGEYIRQTGQIPSSHFTCCGWF 514
           RSEEKRAAAEARK+R+AERT AQ EYIRQTG++PSS++ CCGW 
Sbjct: 497 RSEEKRAAAEARKNREAERTVAQTEYIRQTGRLPSSNYICCGWL 540

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443950|ref|XP_002272255.1| PREDICTED: uncharacterized protein LOC100256651 [Vitis vinifera] gi|297740766|emb|CBI30948.3| unnamed protein product [Vitis vinifera]

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/520 (67%), Positives = 414/520 (79%), Gaps = 20/520 (3%)

Query: 1   MKLIGPHHNRKKDGSNSNSARTSPSRLDDSEFVRNSLLNGGFDDEAPSLEVASEKGAGEV 60
           MKL+GPHH RKKDGSNSNS+RTSPS+L+DSEFV+NSLL    +DEA SLEV+S K  G+V
Sbjct: 21  MKLMGPHHQRKKDGSNSNSSRTSPSKLEDSEFVKNSLL--ALEDEASSLEVSSVKLPGDV 78

Query: 61  VLGHNQGEQASFQPNETLPRENTEVSRVKMQQFSKGDSVNLSAIHPMRMHEDDNLDYDSN 120
           +    QG+Q S QP E+LPREN  V RVK QQ+SK D+ N S IHP+R  E++NLDYDSN
Sbjct: 79  MPDLAQGDQISCQPKESLPRENGSVGRVKTQQYSKCDTGNSSTIHPVRTLEEENLDYDSN 138

Query: 121 ASSSSFEFHKGERSMQNHMARSFSRPMPSKWNDAEKWIMNRQIIQANYAKKNALHNQANR 180
           ASSSSFEFHK ERS+ N ++RS SRPMPSKWNDAEKWIMNRQ  QANY KKN L +Q NR
Sbjct: 139 ASSSSFEFHK-ERSLHNSVSRSLSRPMPSKWNDAEKWIMNRQNAQANYTKKNVLQSQGNR 197

Query: 181 LPATNMVRVVPEYGTYDHKPSTVRAADTKRVDFCQTASHT-LEKFSFVPSGTH----QAH 235
           L   NMVRV PE  + DHK S       KRVDFCQ A+   LEKFSFVP+G H    QA+
Sbjct: 198 LAGANMVRVAPESASTDHKLSV------KRVDFCQPAAQMGLEKFSFVPNGAHPISAQAN 251

Query: 236 GGNAMIDSCTQSKDLEEVIQTDVPCTKSSSENESVVPAIRSVCMRDMGTEMTPVASQEPS 295
           GGNA+ID C Q+KDL+EV   ++ C K S E+ +   AIR+V MRDMGTEMTP+ SQ+PS
Sbjct: 252 GGNALIDLC-QTKDLKEVDPRELSCLKGSPEDTTGFSAIRAVSMRDMGTEMTPIPSQDPS 310

Query: 296 RTATPVGATTPLRSPTSSIPSTPR-GRAPASTPMEQTGIDESQHPVENSKRDLSEQEIKE 354
           RTATPVGATTPLRSPTSS+PSTPR   APA TP E    DES+   +   R+LSE+E+K 
Sbjct: 311 RTATPVGATTPLRSPTSSLPSTPRRAGAPAPTPAEHMTDDESR---DYRNRELSEEELKL 367

Query: 355 KTRREIVALGVQLGKMNIAAWASKDEQGKNTSSAEKNSDMEELERIEYEKRASAWAEAEK 414
           KTR+EIVALGVQLGKMNIAAWASKDE+ K+  S E + D+E+ ERIEYE+RA+AW EAEK
Sbjct: 368 KTRKEIVALGVQLGKMNIAAWASKDEKEKSAQSGETH-DLEDHERIEYERRAAAWEEAEK 426

Query: 415 SKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEE 474
           SKH AR+KREEIKIQAWES+QKAKLEAEMRRIEA+VEQ+RA AQAKMVKKI+M+RQRSEE
Sbjct: 427 SKHAARYKREEIKIQAWESQQKAKLEAEMRRIEAQVEQMRAHAQAKMVKKIAMARQRSEE 486

Query: 475 KRAAAEARKSRDAERTAAQGEYIRQTGQIPSSHFTCCGWF 514
           KRAAAEA ++R+AE+T+AQ EYIRQTG+IP+S F CCGW 
Sbjct: 487 KRAAAEANRNREAEKTSAQAEYIRQTGRIPTSQFVCCGWL 526

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512331|ref|XP_003524873.1| PREDICTED: uncharacterized protein LOC100787239 [Glycine max]

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/524 (66%), Positives = 415/524 (79%), Gaps = 14/524 (2%)

Query: 1   MKLIGPHHNRKKDGSNSNSARTSPSRLDDSEFVRNSLL---NGGFDDE--APSLEVASEK 55
           MKL+GPHH+RKKDGSNSNS+RTSPSR++D+EFV NSLL   N   DDE  +PSL+V S K
Sbjct: 21  MKLLGPHHHRKKDGSNSNSSRTSPSRIEDAEFV-NSLLDSKNDNLDDEVTSPSLDVLSLK 79

Query: 56  GAGEVVLGHNQGEQASFQPNETLPRENTEVSRVKMQQFSKGDSVNLSAIHPMRMHEDDNL 115
            +   +L   Q  Q S++P ET+P+EN ++ R K   F K D+ + SAIH +R  ED+NL
Sbjct: 80  PSSNALLDRKQNGQISYEPKETMPKENGDMGRAKTHHFPKVDTGSSSAIHAVRAIEDENL 139

Query: 116 DYDSNASSSSFEFHKGERSMQNHMARSFSRPMPSKWNDAEKWIMNRQIIQANYAKKNALH 175
           DYDSNASSSSFEF KGER   N   RS  RP+PSKWNDAEKWIMNRQ IQAN++KK   H
Sbjct: 140 DYDSNASSSSFEFDKGERPGNNPATRSLFRPIPSKWNDAEKWIMNRQNIQANHSKKKTAH 199

Query: 176 NQANRLPATNMVRVVPEYGTYDHKPSTVRAADTKRVDFCQTASHT-LEKFSFVPSGTH-- 232
           NQANR+P TNM RV PE G  DHK  T +  +TKRVDFCQ  SH   EKFSFVPS  H  
Sbjct: 200 NQANRMP-TNMGRVAPESGNCDHKLPTGKVTETKRVDFCQPTSHMGFEKFSFVPSDAHSV 258

Query: 233 --QAHGGNAMIDSCTQSKDLEEVIQTDVPCTKSSSENESVVPAIRSVCMRDMGTEMTPVA 290
             QAHG N +++S  QSKDL+EV +  + C++S+ +++SV P IRSV MRDMGTEMTPV 
Sbjct: 259 SGQAHGRNPVVESLPQSKDLKEVNELGLSCSRST-DDQSVTPGIRSVAMRDMGTEMTPVP 317

Query: 291 SQEPSRTATPVGATTPLRSPTSSIPSTPRGRAPASTPMEQTGIDESQHPVENSKRDLSEQ 350
           SQEPSRTATPVG+ TPLRSP SS+PSTPR  APA TP++ T  ++SQ PVEN KR+LSE+
Sbjct: 318 SQEPSRTATPVGSATPLRSPVSSMPSTPRRGAPAPTPLDNTTDEDSQFPVENGKRNLSEE 377

Query: 351 EIKEKTRREIVALGVQLGKMNIAAWASKDEQGKNTSSAEKNSDMEELERIEYEKRASAWA 410
           E+K KTRREI ALGVQLGKMNIAAWASKDEQ KN SS ++ +++ E ERIE+EKRA+ W 
Sbjct: 378 EMKIKTRREIAALGVQLGKMNIAAWASKDEQEKNKSSPQE-ANVNEQERIEFEKRAALWE 436

Query: 411 EAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQ 470
           EAEKSKH ARFKREEIKIQAWES+QKAKLEAEMRRIEA+VEQ+RAQ  AKMVKKI+M+RQ
Sbjct: 437 EAEKSKHTARFKREEIKIQAWESQQKAKLEAEMRRIEAKVEQMRAQTHAKMVKKIAMARQ 496

Query: 471 RSEEKRAAAEARKSRDAERTAAQGEYIRQTGQIPSSHFTCCGWF 514
           RSEEKRAAAEARK+R+AERTAAQ EYIRQTG++PSS++ CCGW 
Sbjct: 497 RSEEKRAAAEARKNREAERTAAQTEYIRQTGRLPSSNYICCGWL 540

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147838010|emb|CAN71634.1| hypothetical protein VITISV_036630 [Vitis vinifera]

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/520 (67%), Positives = 413/520 (79%), Gaps = 20/520 (3%)

Query: 1   MKLIGPHHNRKKDGSNSNSARTSPSRLDDSEFVRNSLLNGGFDDEAPSLEVASEKGAGEV 60
           MKL+GPHH RKKDGSNSNS+RTSPS+L+DSEFV+NSLL    +DEA SLEV+S K  G+V
Sbjct: 80  MKLMGPHHQRKKDGSNSNSSRTSPSKLEDSEFVKNSLL--ALEDEASSLEVSSVKLPGDV 137

Query: 61  VLGHNQGEQASFQPNETLPRENTEVSRVKMQQFSKGDSVNLSAIHPMRMHEDDNLDYDSN 120
           +    QG+Q S QP E+LPREN  V RVK QQ+SK D+ N S IHP+R  E++NLDYDSN
Sbjct: 138 MPDLAQGDQISCQPKESLPRENGSVGRVKTQQYSKCDTGNSSTIHPVRTLEEENLDYDSN 197

Query: 121 ASSSSFEFHKGERSMQNHMARSFSRPMPSKWNDAEKWIMNRQIIQANYAKKNALHNQANR 180
           ASSSSFEFHK ERS+ N ++RS SRPMPSKWNDAEKWIMNRQ  QANY KKN L +Q NR
Sbjct: 198 ASSSSFEFHK-ERSLHNSVSRSLSRPMPSKWNDAEKWIMNRQNAQANYTKKNVLQSQXNR 256

Query: 181 LPATNMVRVVPEYGTYDHKPSTVRAADTKRVDFCQTASHT-LEKFSFVPSGTH----QAH 235
           L   NMVRV PE  + DHK S       KRVDFCQ A+   LEKFSFVP+G H    QA+
Sbjct: 257 LAGANMVRVAPESASTDHKLSV------KRVDFCQPAAQMGLEKFSFVPNGAHPISAQAN 310

Query: 236 GGNAMIDSCTQSKDLEEVIQTDVPCTKSSSENESVVPAIRSVCMRDMGTEMTPVASQEPS 295
           GGNA+ D C Q+KDL+EV   ++ C K S E+ +   AIR+V MRDMGTEMTP+ SQ+PS
Sbjct: 311 GGNALXDLC-QTKDLKEVDPRELSCLKGSPEDTTGFSAIRAVSMRDMGTEMTPIPSQDPS 369

Query: 296 RTATPVGATTPLRSPTSSIPSTPR-GRAPASTPMEQTGIDESQHPVENSKRDLSEQEIKE 354
           RTATPVGATTPLRSPTSS+PSTPR   APA TP E    DES+   +   R+LSE+E+K 
Sbjct: 370 RTATPVGATTPLRSPTSSLPSTPRRAGAPAPTPAEHMTDDESR---DYRNRELSEEELKL 426

Query: 355 KTRREIVALGVQLGKMNIAAWASKDEQGKNTSSAEKNSDMEELERIEYEKRASAWAEAEK 414
           KTR+EIVALGVQLGKMNIAAWASKDE+ K+  S E + D+E+ ERIEYE+RA+AW EAEK
Sbjct: 427 KTRKEIVALGVQLGKMNIAAWASKDEKEKSAQSGETH-DLEDHERIEYERRAAAWEEAEK 485

Query: 415 SKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEE 474
           SKH AR+KREEIKIQAWES+QKAKLEAEMRRIEA+VEQ+RA AQAKMVKKI+M+RQRSEE
Sbjct: 486 SKHAARYKREEIKIQAWESQQKAKLEAEMRRIEAQVEQMRAHAQAKMVKKIAMARQRSEE 545

Query: 475 KRAAAEARKSRDAERTAAQGEYIRQTGQIPSSHFTCCGWF 514
           KRAAAEA ++R+AE+T+AQ EYIRQTG+IP+S F CCGW 
Sbjct: 546 KRAAAEANRNREAEKTSAQAEYIRQTGRIPTSQFVCCGWL 585

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526393|ref|XP_003531802.1| PREDICTED: uncharacterized protein LOC100790482 [Glycine max]

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/524 (66%), Positives = 412/524 (78%), Gaps = 14/524 (2%)

Query: 1   MKLIGPHHNRKKDGSNSNSARTSPSRLDDSEFVRNSLL---NGGFDDE--APSLEVASEK 55
           MKL+GP H+RKKDGSNSNS+RTSPSR++D+EFV NSLL   N   DDE  +PSL+V S K
Sbjct: 21  MKLLGPLHHRKKDGSNSNSSRTSPSRIEDAEFV-NSLLGSKNDNLDDEVTSPSLDVLSLK 79

Query: 56  GAGEVVLGHNQGEQASFQPNETLPRENTEVSRVKMQQFSKGDSVNLSAIHPMRMHEDDNL 115
            + + VL   Q  Q S++  ET+ +EN+   RVKMQ F K D+ N SAIH +R  ED+NL
Sbjct: 80  PSSDAVLDRRQNGQISYEAKETMAKENSNTGRVKMQHFQKVDTGNSSAIHAVRAIEDENL 139

Query: 116 DYDSNASSSSFEFHKGERSMQNHMARSFSRPMPSKWNDAEKWIMNRQIIQANYAKKNALH 175
           DYDSNASSSSFEF KGER   N   RS  RP+PSKWNDAEKWIMNRQ IQAN++KKN  H
Sbjct: 140 DYDSNASSSSFEFDKGERPGNNPATRSLFRPIPSKWNDAEKWIMNRQNIQANHSKKNTAH 199

Query: 176 NQANRLPATNMVRVVPEYGTYDHKPSTVRAADTKRVDFCQTASHT-LEKFSFVPSGTH-- 232
           NQANR+P TNM RV PE G YDHK    +A +TKRVD CQT S+   EKFSFVPS  H  
Sbjct: 200 NQANRMP-TNMGRVAPESGNYDHKLPIGKATETKRVDICQTTSYMGFEKFSFVPSDAHSV 258

Query: 233 --QAHGGNAMIDSCTQSKDLEEVIQTDVPCTKSSSENESVVPAIRSVCMRDMGTEMTPVA 290
             QAHG N +++S  QSKDL++V +  + C++S+ +++SV+P IRSV MRDMGTEMTPV 
Sbjct: 259 SGQAHGRNPVVESLPQSKDLKDVNELGLSCSRST-DDQSVMPGIRSVAMRDMGTEMTPVP 317

Query: 291 SQEPSRTATPVGATTPLRSPTSSIPSTPRGRAPASTPMEQTGIDESQHPVENSKRDLSEQ 350
           SQEPSRTATPVG+ TPLRSP SS+PSTPR  APA TP++ T  ++SQ PVEN KR LSE+
Sbjct: 318 SQEPSRTATPVGSATPLRSPVSSMPSTPRRGAPAPTPLDNTTNEDSQFPVENGKRHLSEE 377

Query: 351 EIKEKTRREIVALGVQLGKMNIAAWASKDEQGKNTSSAEKNSDMEELERIEYEKRASAWA 410
           E+K KTRREI ALGVQLGKMNIAAWASKDEQ KN SS    S +E+ ERIE+EKRA+ W 
Sbjct: 378 EMKIKTRREIAALGVQLGKMNIAAWASKDEQEKNKSSPRDVSVLEQ-ERIEFEKRAALWE 436

Query: 411 EAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQ 470
           EAEKSKH ARFKREEIKIQAWES+QKAKLEAEM RIEA+VEQ+RAQ  AKMVKKI+M+RQ
Sbjct: 437 EAEKSKHTARFKREEIKIQAWESQQKAKLEAEMGRIEAKVEQMRAQTHAKMVKKIAMARQ 496

Query: 471 RSEEKRAAAEARKSRDAERTAAQGEYIRQTGQIPSSHFTCCGWF 514
           R EEK AAAEARK+R+AERTAAQ EYIRQTG++PSS++ CCGW 
Sbjct: 497 RLEEKCAAAEARKNREAERTAAQTEYIRQTGRLPSSNYICCGWL 540

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061059|ref|XP_002300338.1| predicted protein [Populus trichocarpa] gi|222847596|gb|EEE85143.1| predicted protein [Populus trichocarpa]

 Score =  628 bits (1620), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 330/525 (62%), Positives = 390/525 (74%), Gaps = 28/525 (5%)

Query: 1   MKLIGPHHNRKKDGSNSNSARTSPSRLDDSEFVRNSLLNGGFDD-----EAPSLEVASEK 55
           MKL+GPHHNRKKDGSNSNS+RTSPS+L D+EFV+NSLL   F D      A  LEVAS  
Sbjct: 21  MKLVGPHHNRKKDGSNSNSSRTSPSKLQDNEFVKNSLLASDFGDFGEEVAALGLEVASVN 80

Query: 56  GAGEVVLGHNQGEQASFQPNETLPRENTEVSRVKMQQFSKGDSVNLSAIHPMRMHEDDNL 115
              E VL   Q +     P ET+P+E  +  RVKMQ FSK +  N SA+HP+R  ED+NL
Sbjct: 81  FPSEAVLDLCQADL----PMETVPKEIGDAGRVKMQPFSKCEKGNSSAVHPVRTVEDENL 136

Query: 116 DYDSNASSSSFEFHKGERSMQNHMARSFSRPMPSKWNDAEKWIMNRQIIQANYAKKNA-L 174
           DYDSNASSSSFEFH  ERS+ N  ++ FSRPM SKWNDAEKWIM RQ +Q NY KKN  L
Sbjct: 137 DYDSNASSSSFEFH-NERSVNNQFSKRFSRPMSSKWNDAEKWIMKRQNVQPNYVKKNNNL 195

Query: 175 HNQANRLPATNMVRVVPEYGTYDHKPSTVRAADTKRVDFCQ-TASHTLEKFSFVPSGT-- 231
           HNQANR P T++ RV P    YD + S  R ADTK +DFC  +     EKFSF+P G+  
Sbjct: 196 HNQANRNPVTSVDRVAPALSNYDPRSSYSRVADTKLIDFCLPSYQQAFEKFSFIPPGSLT 255

Query: 232 --HQAHGGNAMIDSCTQSKDLEEVIQTDVPCTKSSSENESVVPAIRSVCMRDMGTEMTPV 289
              Q +G + ++D C QS DL+EV Q ++          S VP +RSVCMRDMGTEMTPV
Sbjct: 256 ISGQENGVDTLVDRCAQSTDLKEVDQREL----------SFVPVVRSVCMRDMGTEMTPV 305

Query: 290 ASQEPSRTATPVGATTPLRSPTSSIPSTPRGRAPASTPMEQTGIDESQHPVENSKRDLSE 349
            S EPSRTATPV ATTPLRSPTSSIPSTP+ RAPA T  +    D++QH   N K +L+E
Sbjct: 306 TSLEPSRTATPVDATTPLRSPTSSIPSTPQRRAPAPTTTDHCSNDDTQHATGNGKIELTE 365

Query: 350 QEIKEKTRREIVALGVQLGKMNIAAWASKDEQGKNTSSAEKNSDMEELERIEYEKRASAW 409
           QE+K KTRREI ALGVQLGKMNIAAWASK++Q K+ SS E  ++ME  E+IE+ KRA+AW
Sbjct: 366 QELKLKTRREIEALGVQLGKMNIAAWASKNDQQKHASSLE-TTEMEN-EQIEFVKRAAAW 423

Query: 410 AEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSR 469
            EAE+SKH AR+KREEIKIQAWES++K KLEAEMRRIEA VEQ+RAQA AKMVKKI+M+R
Sbjct: 424 EEAEQSKHTARYKREEIKIQAWESQRKVKLEAEMRRIEARVEQMRAQAHAKMVKKIAMTR 483

Query: 470 QRSEEKRAAAEARKSRDAERTAAQGEYIRQTGQIPSSHFTCCGWF 514
           QRSEEK  AAEARK++DAERTAAQ EYIRQTG++PSS++ CCGWF
Sbjct: 484 QRSEEKWVAAEARKNQDAERTAAQAEYIRQTGRMPSSNYICCGWF 528

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433601|ref|XP_004134586.1| PREDICTED: uncharacterized protein LOC101217408 [Cucumis sativus]

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 327/523 (62%), Positives = 395/523 (75%), Gaps = 15/523 (2%)

Query: 1   MKLIGPHHNRKKDGSNSNSARTSPSRLDDSEFVRNSLL----NGGFDDEAPS--LEVASE 54
           MKL+GPHH++KKDGSNSNS+RTSPS+L+DSEFVRNSLL    +G F+DE  S  LEV SE
Sbjct: 21  MKLMGPHHHKKKDGSNSNSSRTSPSKLEDSEFVRNSLLLATESGDFEDEVTSSCLEVPSE 80

Query: 55  KGAGEVVLGHNQGEQASFQPNETLPRENTEVSRVKMQQFSKGDSVNLSAIHPMRMHEDDN 114
           K   + V      +++S  P E L +E++E  R +MQQ  KGD  N S +HP +  ED+N
Sbjct: 81  KVLNQSVSDPKPNDRSSGLPKEFLSKEHSESVRNRMQQCLKGDGCNSSTVHPSKSVEDEN 140

Query: 115 LDYDSNASSSSFEFHKGERSMQNHMARSFSRPMPSKWNDAEKWIMNRQI--IQANYAKKN 172
           LDYDSNASSSSFEFHKGERS+ + ++RS  RPMPSKWNDAEKWI+NRQ     ANY+KKN
Sbjct: 141 LDYDSNASSSSFEFHKGERSVHSSISRSHLRPMPSKWNDAEKWIINRQNNGQAANYSKKN 200

Query: 173 ALHNQANRLPATNMVRVVPEYGTYDHKPSTVRAADTKRVDFCQTASHT-LEKFSFVPSGT 231
           A      R+ ATNMVRV PE   Y+ + ST RA + K VDF Q+      EKFSFVP G 
Sbjct: 201 APPTHGYRMAATNMVRVAPESANYELRSSTGRAVEAKHVDFYQSGLQMGPEKFSFVPVGV 260

Query: 232 HQAHGGNAMIDSCTQSKDLEEVIQTDVPCTKSSSENESVVPAIRSVCMRDMGTEMTPVAS 291
           + +   N MIDSC+Q KDL+EV     P +K+S E+ + +PAIR+V MRDMGTEMTPV S
Sbjct: 261 YSS-ADNVMIDSCSQIKDLKEVDHK--PSSKASKEDSTGIPAIRAVSMRDMGTEMTPVPS 317

Query: 292 QEPSRTATPVGATTPLRSPTSSIPSTPRGRAPASTPMEQTGIDESQHPVENSKRDLSEQE 351
           QEPSRTATPVGA+ PLRSPTSSIPSTPR  APA TP+EQ+ I   Q   EN KR+LS  E
Sbjct: 318 QEPSRTATPVGAS-PLRSPTSSIPSTPRRDAPAPTPIEQSPIG-LQQLTENGKRELSADE 375

Query: 352 IKEKTRREIVALGVQLGKMNIAAWASKDEQGKNTSSAEKNSDMEELERIEYEKRASAWAE 411
           +K KTRREI+ALG+QLGK NIAAWASKDE  +   +AE N+D E  ER E+EKRA+AW E
Sbjct: 376 MKLKTRREILALGMQLGKTNIAAWASKDEPERKRHNAE-NADKEAFERAEFEKRAAAWEE 434

Query: 412 AEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQR 471
            EKSKH AR+KREEIKIQAWE++QK KLEAEMRR+EA+VEQ+RAQA+ KM+KKI+M+RQ+
Sbjct: 435 VEKSKHTARYKREEIKIQAWENQQKTKLEAEMRRVEAQVEQMRAQAEVKMMKKIAMTRQK 494

Query: 472 SEEKRAAAEARKSRDAERTAAQGEYIRQTGQIPSSHFTCCGWF 514
           SEEKRAAAE RK ++AER AAQ E IRQTG++PSS + CCGW 
Sbjct: 495 SEEKRAAAECRKKQEAERAAAQAEQIRQTGRMPSSPYICCGWL 537

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220725|ref|NP_174322.1| Remorin family protein [Arabidopsis thaliana] gi|12322121|gb|AAG51095.1|AC025295_3 hypothetical protein [Arabidopsis thaliana] gi|26452636|dbj|BAC43401.1| unknown protein [Arabidopsis thaliana] gi|29824297|gb|AAP04109.1| unknown protein [Arabidopsis thaliana] gi|332193084|gb|AEE31205.1| Remorin family protein [Arabidopsis thaliana]

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 296/537 (55%), Positives = 378/537 (70%), Gaps = 72/537 (13%)

Query: 1   MKLIGPHHNRKKDGS--NSNSARTSPSRL---DDSEFVRNSLL--NGGFDDE--APSLEV 51
           MKL+GP +N K++GS  NSNS+RTSPSRL   DDSEF +NSLL  N   DD+  A + ++
Sbjct: 21  MKLMGPLNNMKREGSKSNSNSSRTSPSRLQIPDDSEFSKNSLLASNSYSDDDVAATTTDI 80

Query: 52  ASEKGAGEVVL----GHNQGEQASFQPNETLPRENTEVSRVKMQQFSKGDSVNLSAIHPM 107
              K   E VL      NQG +   +    +PREN +    ++QQF KGD +N+++ H M
Sbjct: 81  EVAKLPNEPVLYPTENDNQGSKDRCE--GVVPRENDQP---RLQQFRKGD-LNMASPHIM 134

Query: 108 RMHEDDNLDYDSNASSSSFEFHK--GERSMQNHMARSF-SRPMPSKWNDAEKWIMNRQII 164
           R  ED+NLDYDSNASSSSFEFH+  GERS QNH +R + SR MPSKWNDAEKWIM+RQ +
Sbjct: 135 RPQEDENLDYDSNASSSSFEFHRARGERSNQNHGSRGYPSRQMPSKWNDAEKWIMSRQNM 194

Query: 165 QANYAKKNALHNQANRLPATNMVRVVPEYGTYDHKPSTVRAADTKRVDFCQTAS-HTLEK 223
                +KN    Q NR+P    VR+VP+   Y+H  S        R+D CQ++     EK
Sbjct: 195 ---VMRKNG---QGNRIP----VRIVPDNAGYEHNKS--------RMDLCQSSQVDGFEK 236

Query: 224 F-SFVPSGTH----QAHGGNAMIDSCTQSKDLEEVIQTDVPCTKSSSENESVVPAIRSVC 278
           F + VPS  H    Q +GG+++ID  TQS DL +          SS ++ +  PAIRSVC
Sbjct: 237 FPNVVPSAPHPILTQEYGGDSLIDQSTQSNDLAD----------SSHDHTTGGPAIRSVC 286

Query: 279 MRDMGTEMTPVASQEPSRTATPVGATTPLRSPTSSIPSTPRGRAPASTPMEQTGIDESQH 338
           MRDMGTEMTP+ SQEPSR+ TPVGATTPLRSPTSS+PSTPRG  P  + M +        
Sbjct: 287 MRDMGTEMTPIPSQEPSRSVTPVGATTPLRSPTSSLPSTPRGGQPEESSMSK-------- 338

Query: 339 PVENSKRDLSEQEIKEKTRREIVALGVQLGKMNIAAWASKDEQGKNTSSAEKNSDMEELE 398
              N++R+LSE+E K KTRREIVALGVQLGKMNIAAWASK    +   + + N D EE +
Sbjct: 339 ---NTRRELSEEEEKAKTRREIVALGVQLGKMNIAAWASK----EEEENKKNNGDAEEAQ 391

Query: 399 RIEYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQ 458
           +IE+EKRA+AW EAEKSKH AR+KREEI+IQAWES++KAKLEAEMRRIEA+VEQ++A+A+
Sbjct: 392 KIEFEKRATAWEEAEKSKHNARYKREEIRIQAWESQEKAKLEAEMRRIEAKVEQMKAEAE 451

Query: 459 AKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYIRQTGQIPSSHF-TCCGWF 514
           AK++KKI++++QRSEEKRA AEARK+RDAE+  A+ +YIR+TG+IP+S +  CCGWF
Sbjct: 452 AKIMKKIALAKQRSEEKRALAEARKTRDAEKAVAEAQYIRETGRIPASSYKICCGWF 508

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	514
TAIR|locus:2204197	509	AT1G30320 "AT1G30320" [Arabido	0.461	0.465	0.537	6.7e-65
TAIR|locus:2051673	486	AT2G02170 "AT2G02170" [Arabido	0.735	0.777	0.371	7.8e-62
TAIR|locus:2008625	347	AT1G67590 "AT1G67590" [Arabido	0.237	0.351	0.354	6.3e-25
TAIR|locus:2197081	442	AT1G53860 "AT1G53860" [Arabido	0.377	0.438	0.252	1.9e-13
TAIR|locus:2050704	190	AT2G45820 "AT2G45820" [Arabido	0.249	0.673	0.303	1e-09
TAIR|locus:2115085	427	AT4G36970 "AT4G36970" [Arabido	0.196	0.236	0.303	2.5e-08
TAIR|locus:2101303	175	AT3G48940 "AT3G48940" [Arabido	0.252	0.742	0.264	1.4e-07
UNIPROTKB|P93788	198	P93788 "Remorin" [Solanum tube	0.138	0.358	0.405	3.3e-07
TAIR|locus:2098921	212	AT3G61260 [Arabidopsis thalian	0.356	0.863	0.239	3.7e-07
TAIR|locus:2172793	202	AT5G23750 "AT5G23750" [Arabido	0.249	0.633	0.276	1.6e-06

TAIR|locus:2204197 AT1G30320 "AT1G30320" [Arabidopsis thaliana (taxid:3702)]

 Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
 Identities = 136/253 (53%), Positives = 176/253 (69%)

Query:   263 SSSENESVVPAIRSVCMRDMGTEMTPVASQEPSRTATPVGAXXXXXXXXXXXXXXXRGRA 322
             SS ++ +  PAIRSVCMRDMGTEMTP+ SQEPSR+ TPVGA               RG  
Sbjct:   271 SSHDHTTGGPAIRSVCMRDMGTEMTPIPSQEPSRSVTPVGATTPLRSPTSSLPSTPRGGQ 330

Query:   323 PASTPMEQTGIDESQHPVENSKRDLSEQEIKEKTRREIVALGVQLGKMNIAAWASKDEQG 382
             P  + M +           N++R+LSE+E K KTRREIVALGVQLGKMNIAAWASK+E+ 
Sbjct:   331 PEESSMSK-----------NTRRELSEEEEKAKTRREIVALGVQLGKMNIAAWASKEEE- 378

Query:   383 KNTSSAEKNSDMEELERIEYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAE 442
                 + + N D EE ++IE+EKRA+AW EAEKSKH AR+KREEI+IQAWES++KAKLEAE
Sbjct:   379 ---ENKKNNGDAEEAQKIEFEKRATAWEEAEKSKHNARYKREEIRIQAWESQEKAKLEAE 435

Query:   443 MRRIEAEVEQIRAQAQAKMVKKISMSRQXXXXXXXXXXXXXXXXXXXTAAQGEYIRQTGQ 502
             MRRIEA+VEQ++A+A+AK++KKI++++Q                     A+ +YIR+TG+
Sbjct:   436 MRRIEAKVEQMKAEAEAKIMKKIALAKQRSEEKRALAEARKTRDAEKAVAEAQYIRETGR 495

Query:   503 IPSSHFT-CCGWF 514
             IP+S +  CCGWF
Sbjct:   496 IPASSYKICCGWF 508

GO:0003677 "DNA binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2051673 AT2G02170 "AT2G02170" [Arabidopsis thaliana (taxid:3702)]

 Score = 609 (219.4 bits), Expect = 7.8e-62, Sum P(2) = 7.8e-62
 Identities = 150/404 (37%), Positives = 216/404 (53%)

Query:   113 DNLDYDSNASSSS-FEFHKGERSMQNHMA--RSFSRPMPSKWNDAEKWIMNRQIIQANYA 169
             DN++   + S+SS FEF K E+   N     RSFS+P PSKW+DA+KWI +     AN  
Sbjct:    98 DNVNEIKSVSASSVFEFQKTEKEKVNQRMPIRSFSKPAPSKWDDAQKWIASPT---ANRP 154

Query:   170 KKNALHNQANRL-PATNMVRVVPEYGTYDHKPSTVRAADTKRVDFCQTASHTLEKFSFVP 228
             K   +    ++  P+      +      +H+   V   DTKR+D  Q       KF    
Sbjct:   155 KTGQVQVPGSKKGPSFGRQSSMKIVEVAEHR--VVEEPDTKRIDVSQVKKDMGNKFGSWE 212

Query:   229 SGTHQAHGGNAMIDSCTQSKDLEEVIQTDVPCTKSSSENESVVP--AIRSVCMRDMGTEM 286
               ++             ++  +E   + ++    SS       P    RSV MRDMGTEM
Sbjct:   213 VDSYTTVDSYVKPVLMVENSIVESATEVNLSRHDSSVATAFAQPPSTARSVSMRDMGTEM 272

Query:   287 TPVASQEPSRTATPVGAXXXXXXXXXXXXXXXRGRAPASTPMEQTGIDESQHPVENSKRD 346
             TP+ASQEPSR  TP+ A                 R+P S+     G   S  P+ N  ++
Sbjct:   273 TPIASQEPSRNGTPIRATTPI-------------RSPISSEPSSPGRQASASPMSN--KE 317

Query:   347 LSEQEIKEKTRREIVALGVQLGKMNIAAWASKDEQGKNTSSAEKNSDMEELERIEYEKRA 406
             LSE+E++ KTRREI+ LG QLGK NIAAWASK+++ K+ S++ K     +  +   E RA
Sbjct:   318 LSEKELQMKTRREIMVLGTQLGKFNIAAWASKEDEDKDASTSLKTKASLQTSKSVSEARA 377

Query:   407 SAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKIS 466
             +AW EAEK+KH+ARF+REE+KIQAWE+ QKAK EAEM++ E +VE+I+ +AQ +++KK++
Sbjct:   378 TAWEEAEKAKHMARFRREEMKIQAWENHQKAKSEAEMKKTEVKVERIKGRAQDRLMKKLA 437

Query:   467 MSRQXXXXXXXXXXXXXXXXXXXTAAQGEYIRQTGQIPSSHFTC 510
                +                   T  Q E IR+TG++PS  F+C
Sbjct:   438 TIERKAEEKRAAAEAKKDHQAAKTEKQAEQIRRTGKVPSLLFSC 481

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2008625 AT1G67590 "AT1G67590" [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 6.3e-25, Sum P(2) = 6.3e-25
 Identities = 44/124 (35%), Positives = 79/124 (63%)

Query:   385 TSSAEK-NSDMEELERIE-YEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAE 442
             ++++EK N  +E  + +   E RA AW EAE++K +AR+KREE+KIQAWE+ +K K E E
Sbjct:   210 SNNSEKVNGFVESKKAMSAMEARAMAWDEAERAKFMARYKREEVKIQAWENHEKRKAEME 269

Query:   443 MRRIEAEVEQIRAQAQAKMVKKISMSRQXXXXXXXXXXXXXXXXXXXTAAQGEYIRQTGQ 502
             M+++E + E+++A+A+ K+  K++ +++                   T+ + +YIR++G 
Sbjct:   270 MKKMEVKAERMKARAEEKLANKLAATKRIAEERRANAEAKLNEKAVKTSEKADYIRRSGH 329

Query:   503 IPSS 506
             +PSS
Sbjct:   330 LPSS 333

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2197081 AT1G53860 "AT1G53860" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
 Identities = 54/214 (25%), Positives = 105/214 (49%)

Query:   262 KSSSENESVVPAIRSVCMRD----MGTEMTPVASQEPSRTATPVGAXXXXXXXXXXXXXX 317
             K ++E   ++P+      +D    +  E   V  ++     TP+G+              
Sbjct:   187 KLANEVPQILPSTEGFIFKDSDKFLRYEEAQVQHRDMGTEMTPIGSVTTSRCHTPF---- 242

Query:   318 XRGRAPA--STPMEQTGIDESQHPVENSKRDLSEQEIKEKTRREIVALGVQLGKMNIAAW 375
              +  +PA  +TP + +G      P+  +K  +   E ++K R    +       +  + W
Sbjct:   243 -KSSSPARHNTPSQLSG------PLTETKNVIDISEFEDKLRLSGSSTSQYCYSVT-SHW 294

Query:   376 ASKDEQGKNTSSAEKNSDME-ELERIEYEKRASAWA-EAEKSKHIARFKREEIKIQAWES 433
              S++E+ +  S + ++ DME EL R   E +A  W  E +K K   R++REE KIQAW +
Sbjct:   295 NSREEEEEEISKSLRHFDMESELRRSVSESKAPLWDDEDDKIKFCQRYQREEAKIQAWVN 354

Query:   434 RQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISM 467
              + AK EA+ R++E +++++R+  + K++K++ M
Sbjct:   355 LENAKAEAQSRKLEVKIQKMRSNLEEKLMKRMDM 388

GO:0003677 "DNA binding" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2050704 AT2G45820 "AT2G45820" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 1.0e-09, P = 1.0e-09
 Identities = 41/135 (30%), Positives = 65/135 (48%)

Query:   383 KNTSSAEKNSDMEELERIEYEKRAS---AWAEAEKSKHIARFKREEIKIQAWESRQKAKL 439
             K  SS   + D+  L  +E EK+ S   AW E+EKSK   R +++   + AWE+ +KA +
Sbjct:    60 KKASSGSADRDVI-LADLEKEKKTSFIKAWEESEKSKAENRAQKKISDVHAWENSKKAAV 118

Query:   440 EAEMRRIEAEVEQIRAQAQAKMVKKISMSRQXXXXXXXXXXXXXXXXXXXTAAQGEYIRQ 499
             EA++R+IE ++E+ +AQ   KM  K++   +                       G   R 
Sbjct:   119 EAQLRKIEEKLEKKKAQYGEKMKNKVAAIHKLAEEKRAMVEAKKGEELLKAEEMGAKYRA 178

Query:   500 TGQIPSSHFTCCGWF 514
             TG +P +    CG F
Sbjct:   179 TGVVPKA---TCGCF 190

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2115085 AT4G36970 "AT4G36970" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
 Identities = 31/102 (30%), Positives = 59/102 (57%)

Query:   369 KMNIAAWASKDEQGKNTSSAEKNSDMEELE-RIEYEKRASAWAEAEKSKHIARFKREEIK 427
             KM+  A   K  + +  SS     +  E+E   E    +S+W  +E +  +++ +REE K
Sbjct:   265 KMDKGARMIKRPKRRVMSSRIIRREQPEVEDNSEASASSSSWDISEPAMTLSKLQREEAK 324

Query:   428 IQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSR 469
             I AWE+ QKAK EA +R++E ++E+ ++ +  K++ K+  ++
Sbjct:   325 IAAWENLQKAKAEAAIRKLEVKLEKKKSASMDKILNKLQTAK 366

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2101303 AT3G48940 "AT3G48940" [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 36/136 (26%), Positives = 62/136 (45%)

Query:   376 ASKDEQGKNTSSAEKNSDMEELERIEYEKRAS---AWAEAEKSKHIARFKREEIKIQAWE 432
             A +  + K   S  +++    L R+E +KR S   AW EAEKSK   + +++   + AWE
Sbjct:    40 AKEPTEDKKVGSVHRDA---VLVRLEQDKRISLIKAWEEAEKSKVENKAQKKISSVGAWE 96

Query:   433 SRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQXXXXXXXXXXXXXXXXXXXTAA 492
             + +KA +EAE+++IE ++ + +A    +M  KI+   +                      
Sbjct:    97 NSKKASVEAELKKIEEQLNKKKAHYTEQMKNKIAQIHKEAEEKRAMTEAKRGEDVLKAEE 156

Query:   493 QGEYIRQTGQIPSSHF 508
                  R TG  P+  F
Sbjct:   157 MAAKYRATGTAPTKLF 172

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048765 "root hair cell differentiation" evidence=RCA

UNIPROTKB|P93788 P93788 "Remorin" [Solanum tuberosum (taxid:4113)]

 Score = 136 (52.9 bits), Expect = 3.3e-07, P = 3.3e-07
 Identities = 30/74 (40%), Positives = 49/74 (66%)

Query:   397 LERIEYEKRAS---AWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQI 453
             L R+  EKR S   AW E+EKSK   + +++   I AWE+ +KA LEAE++++E ++E+ 
Sbjct:    81 LARVATEKRVSLIKAWEESEKSKAENKAQKKVSAIGAWENSKKANLEAELKKMEEQLEKK 140

Query:   454 RAQAQAKMVKKISM 467
             +A+   KM  KI++
Sbjct:   141 KAEYTEKMKNKIAL 154

GO:0005886 "plasma membrane" evidence=IDA

GO:0007267 "cell-cell signaling" evidence=NAS

GO:0048032 "galacturonate binding" evidence=IDA

TAIR|locus:2098921 AT3G61260 [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 3.7e-07, P = 3.7e-07
 Identities = 47/196 (23%), Positives = 91/196 (46%)

Query:   323 PASTPMEQTGIDESQHPVENSKRDLSEQEIKEKTRREIVALGVQLGKMNIAAWASKDEQG 382
             PA  P E      +  P + +K D++E++I+     +I      L    +     ++   
Sbjct:    26 PAPAPAEIPAPAPAPTPADVTK-DVAEEKIQNPPPEQIFDDSKAL---TVVEKPVEEPAP 81

Query:   383 KNTSSAEKNSDMEELERIEYEKRAS---AWAEAEKSKHIARFKREEIKIQAWESRQKAKL 439
                +SA  + D++ L  +  EKR S   AW E+EKSK   + +++   + AWE+ +KA +
Sbjct:    82 AKPASASLDRDVK-LADLSKEKRLSFVRAWEESEKSKAENKAEKKIADVHAWENSKKAAV 140

Query:   440 EAEMRRIEAEVEQIRAQAQAKMVKKIS-MSRQXXXXXXXXXXXXXXXXXXXTAAQGEYIR 498
             EA++++IE ++E+ +A+   +M  K++ + ++                        +Y R
Sbjct:   141 EAQLKKIEEQLEKKKAEYAERMKNKVAAIHKEAEERRAMIEAKRGEDVLKAEETAAKY-R 199

Query:   499 QTGQIPSSHFTCCGWF 514
              TG +P +    CG F
Sbjct:   200 ATGIVPKA---TCGCF 212

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2172793 AT5G23750 "AT5G23750" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 37/134 (27%), Positives = 62/134 (46%)

Query:   380 EQGKNTSSAEKNSDMEELERIEYEKRAS---AWAEAEKSKHIARFKREEIKIQAWESRQK 436
             E+ K   S  +++    L R+E EKR S   AW EAEK K   + +++   I +WE+ +K
Sbjct:    71 EEEKKEGSVNRDA---VLARVETEKRMSLIKAWEEAEKCKVENKAEKKLSSIGSWENNKK 127

Query:   437 AKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQXXXXXXXXXXXXXXXXXXXTAAQGEY 496
             A +EAE++++E ++E+ +A+   +M  KI+   +                          
Sbjct:   128 AAVEAELKKMEEQLEKKKAEYVEQMKNKIAQIHKEAEEKRAMIEAKRGEEILKAEELAAK 187

Query:   497 IRQTGQIPSSHFTC 510
              R TG  P   F C
Sbjct:   188 YRATGTAPKKLFGC 201

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0042546 "cell wall biogenesis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00028350001 SubName- Full=Chromosome chr10 scaffold_43, whole genome shotgun sequence; (513 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	514
pfam03763	112	pfam03763, Remorin_C, Remorin, C-terminal region	1e-30
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-04
COG3064	387	COG3064, TolA, Membrane protein involved in colici	3e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-04
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	0.001
COG2268	548	COG2268, COG2268, Uncharacterized protein conserve	0.002
PRK11448	1123	PRK11448, hsdR, type I restriction enzyme EcoKI su	0.003

>gnl|CDD|190741 pfam03763, Remorin_C, Remorin, C-terminal region

 Score =  114 bits (287), Expect = 1e-30
 Identities = 47/111 (42%), Positives = 78/111 (70%)

Query: 398 ERIEYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQA 457
           ++ E E RA AW EAEK+K   +++REE KIQAWE+++KAK EAE+++IE ++E+ +A+A
Sbjct: 2   KKSEAESRADAWEEAEKAKINNKYQREEAKIQAWENKKKAKAEAELKKIERKLEKKKAEA 61

Query: 458 QAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYIRQTGQIPSSHF 508
             K+  K++ + +++EEKRA AEA++  +  +   +   IR TG++PS   
Sbjct: 62  AEKLKNKLAAAHKKAEEKRATAEAKRGEEEAKAEEKAAKIRATGKLPSKLS 112

Remorins are plant-specific plasma membrane-associated proteins. In tobacco remorin co-purifies with lipid rafts. Most remorins have a variable, proline-rich C-half and a more conserved N-half that is predicted to form coiled coils. Consistent with this, circular dichroism studies have demonstrated that much of the protein is alpha-helical. Remorins exist in plasma membrane preparations as oligomeric structures and form filaments in vitro. The proteins can bind polyanions including the extracellular matrix component oligogalacturonic acid (OGA). In vitro, remorin in plasma membrane preparations is phosphorylated (principally on threonine residues) in the presence of OGA and thus co-purifies with a protein kinases(s). The biological functions of remorins are unknown but roles as components of the membrane/cytoskeleton are possible. Length = 112

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 44.0 bits (103), Expect = 2e-04
 Identities = 39/168 (23%), Positives = 76/168 (45%), Gaps = 9/168 (5%)

Query: 335  ESQHPVENSKRDLSEQEIKEKTRREIVALGVQLGKMNIAAWASKDEQGKNTSSAEKNSDM 394
            E+    E +K+D  E +  E+ R        +  +M   A      + +    A++    
Sbjct: 1227 EAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKA 1286

Query: 395  EELERIEYEKRASAWAEAEKSKHIARFKR--EEIKIQAWESRQKA---KLEAEMRRIEAE 449
            EE ++ +  K+A    +A+++K  A   +  +E K +A E+++KA   K +AE  +  AE
Sbjct: 1287 EEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAE 1346

Query: 450  VEQIRAQAQAKMVK----KISMSRQRSEEKRAAAEARKSRDAERTAAQ 493
              +  A+A A   +    K   + ++ EE +  A+A K +  E+  A 
Sbjct: 1347 AAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKAD 1394

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 44.0 bits (103), Expect = 2e-04
 Identities = 41/164 (25%), Positives = 81/164 (49%), Gaps = 5/164 (3%)

Query: 329  EQTGIDESQHPVENSKRDLSEQEIKEKTRREIVALGVQLGKMNIAAWASKDEQGKNTSSA 388
            E+   DE++   E +K+    ++  E+ +++  A   +  +   AA A+K E       A
Sbjct: 1300 EKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEA 1359

Query: 389  EKNSDMEELERIEYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEA 448
            E   +  E    + E+ A   A+A K K   + K +E K +A E ++KA    E+++  A
Sbjct: 1360 EAAEEKAEAAEKKKEE-AKKKADAAKKKAEEKKKADEAKKKAEEDKKKAD---ELKKAAA 1415

Query: 449  EVEQI-RAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTA 491
              ++   A+ +A+  KK   +++++EE + A EA+K  +  + A
Sbjct: 1416 AKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKA 1459

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 43.6 bits (102), Expect = 3e-04
 Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 4/165 (2%)

Query: 329  EQTGIDESQHPVENSKRDLSEQEIKEKTRREIVALGVQLGKMNIAAWASKDEQGKNTSSA 388
            E+   DE++   E  K D ++++ +E  + +      +  K    A   K E+ K  + A
Sbjct: 1288 EKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEA 1347

Query: 389  EKNSDMEELERIEYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEA 448
             K     E    E E        AEK K  A+ K +  K +A E ++  + + +    + 
Sbjct: 1348 AKAE--AEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKK 1405

Query: 449  EVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQ 493
            + ++++  A AK  KK   +++++EEK+ A EA+K  +  + A +
Sbjct: 1406 KADELKKAAAAK--KKADEAKKKAEEKKKADEAKKKAEEAKKADE 1448

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 43.6 bits (102), Expect = 3e-04
 Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 8/125 (6%)

Query: 376  ASKDEQGKNTSSAEKNSDMEELERIEYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQ 435
            A K E+ KN +   K  + ++ E    E+    + E +K K     K EE KI+A E ++
Sbjct: 1569 AKKAEEDKNMA-LRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKK 1627

Query: 436  ----KAKLEAEMRRIEAEV---EQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAE 488
                K K+E   ++   E    E+++   +   +K    +++  E+K+ A EA+K+ + E
Sbjct: 1628 AEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDE 1687

Query: 489  RTAAQ 493
            + AA+
Sbjct: 1688 KKAAE 1692

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 43.2 bits (101), Expect = 3e-04
 Identities = 37/182 (20%), Positives = 80/182 (43%), Gaps = 11/182 (6%)

Query: 321  RAPASTPMEQTGIDESQHPVENSKRDLSEQEIKEKTRR---------EIVALGVQLGKMN 371
            +A  +   E+  I+E     E  K+  +E+  K +  +         E     V+  K  
Sbjct: 1582 KAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKK 1641

Query: 372  IAAWASKDEQGKNTSSAEKNSDMEELERIEYEKRASAWAEAEKSKHIARFKREEIKIQAW 431
             A    K E+ K      K    EE ++ E +K+ +   EA+K++   +   E +K +A 
Sbjct: 1642 EAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAE--EAKKAEEDEKKAAEALKKEAE 1699

Query: 432  ESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTA 491
            E+++  +L+ +    + + E+++   +   +K     ++  E+K+ A EA+K  + ++  
Sbjct: 1700 EAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKI 1759

Query: 492  AQ 493
            A 
Sbjct: 1760 AH 1761

Length = 2084

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 43.0 bits (101), Expect = 3e-04
 Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 2/155 (1%)

Query: 341 ENSKRDLSEQEIKEKTRREIVALGVQLGKMNIAAWASKDEQGKNTSSAEKNSDMEELERI 400
           E   +  +EQE  ++  +E +    Q  +   A   ++ EQ +    A K +   E ++ 
Sbjct: 91  ELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAA--AEQKKK 148

Query: 401 EYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAK 460
               +A A AEA K K  A  K++  +        KAK EA   + +AE E   A  +AK
Sbjct: 149 AEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAK 208

Query: 461 MVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGE 495
              +     ++  E  A  +A   +      A+ +
Sbjct: 209 AEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKAD 243

Length = 387

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 42.8 bits (100), Expect = 4e-04
 Identities = 35/168 (20%), Positives = 76/168 (45%), Gaps = 7/168 (4%)

Query: 335  ESQHPVENSKRDLSEQEIKEKTRREIVALGVQLGKMNIAAWASKDEQGKNTSSAEKNSDM 394
            E     E +++    ++ +   + E V    +L K   A  A    + +    AE+    
Sbjct: 1161 EDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKA 1220

Query: 395  EELERIE-------YEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIE 447
            E+ ++ E        +K A    +AE+ ++    ++ E    A  +R++A ++AE  R  
Sbjct: 1221 EDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKA 1280

Query: 448  AEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGE 495
             E+++   + +A   KK    ++  E K+ A EA+K+ +A++ A + +
Sbjct: 1281 DELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK 1328

Length = 2084

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 15/132 (11%)

Query: 375 WASKDEQGKNTSSAEKNSDMEELERIEYEKRASAWAEAEKSKHIA--RFKREEIKIQAWE 432
           +  + +Q K+   AE+    +E ++ E E +    AE E+ K +   R   +E K QA E
Sbjct: 64  YNRQQQQQKSAKRAEEQRKKKEQQQAE-ELQQKQAAEQERLKQLEKERLAAQEQKKQAEE 122

Query: 433 SRQKAKLE-----------AEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSE-EKRAAAE 480
           + ++A L+           A   + +AE E  RA A AK     +  +  +E  K+AAAE
Sbjct: 123 AAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAE 182

Query: 481 ARKSRDAERTAA 492
           A+K  +AE  A 
Sbjct: 183 AKKKAEAEAAAK 194

Length = 387

>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 33/176 (18%), Positives = 67/176 (38%), Gaps = 22/176 (12%)

Query: 333 IDESQHPVENSKRDLSEQE---IKEKTRREIVALGVQLGKMNIAAWASK-DEQGKNTSSA 388
            +++Q   E       E     +    R++   L  Q     I A   +  E+ K  ++ 
Sbjct: 302 EEKAQAEQEVQHAKALEAREMRVGLIERQKETELEPQERSYFINAAQRQAQEEAKAAANI 361

Query: 389 EKNSDMEELERIEYEKRASAWAEAEKSKHI-----ARFKREEIKIQAWESRQKAKLEAEM 443
            +    +    +E  +       AE++  +     A  ++ EI ++A  ++ +A+ +A  
Sbjct: 362 AEAIGAQAEAAVETARETEEAERAEQAALVAAAEAAEQEQVEIAVRAEAAKAEAEAQAAE 421

Query: 444 RRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYIRQ 499
            + EAE  + + +A+A             E KRA AEA +       A   + + Q
Sbjct: 422 IKAEAEAIREKGKAEA-------------EAKRALAEAIQVLGDAAAAELFKALVQ 464

Length = 548

>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional

 Score = 40.3 bits (95), Expect = 0.003
 Identities = 18/100 (18%), Positives = 48/100 (48%), Gaps = 11/100 (11%)

Query: 386 SSAEKNSDMEELERIEYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRR 445
                ++  +E+  ++ +    A    EK++  A  + ++ ++ A E    A+LE + + 
Sbjct: 140 PENLLHALQQEVLTLKQQLELQA---REKAQSQALAEAQQQELVALE-GLAAELEEKQQE 195

Query: 446 IEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSR 485
           +EA++EQ++ +A          S++R ++++   +    R
Sbjct: 196 LEAQLEQLQEKAAET-------SQERKQKRKEITDQAAKR 228

Length = 1123

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	514
PF03763	111	Remorin_C: Remorin, C-terminal region ; InterPro:	100.0
PF03763	111	Remorin_C: Remorin, C-terminal region ; InterPro:	96.66
PRK09174	204	F0F1 ATP synthase subunit B'; Validated	83.59

>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides

Probab=100.00  E-value=4e-35  Score=257.99  Aligned_cols=110  Identities=51%  Similarity=0.742  Sum_probs=107.1

Q ss_pred             HHHHHHhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010280          399 RIEYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAA  478 (514)
Q Consensus       399 k~~~EarAaAWEEAEkAK~~~RyqREEaKI~AWEN~QKAKAEAemrKiE~KLEKkRA~a~EKm~NKLA~a~rkAEEkRA~  478 (514)
                      +..++++++|||++|++|+++||+|++++|++|||+||+|||++|+|+|++||+||+.++|||+|+|+.||++||++|++
T Consensus         2 ~~~~~a~a~aWe~ae~aK~~~r~~ree~~I~aWEn~qkaKaea~m~k~E~klEkkra~a~ek~~nkia~~~~~Aee~Ra~   81 (111)
T PF03763_consen    2 KEEVEAKADAWEEAEKAKINNRYEREEAKIQAWENLQKAKAEAEMRKIEEKLEKKRAKALEKMKNKIARAHKKAEEKRAA   81 (111)
T ss_pred             cHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhHHHHHHHHHHHHhhcCCCCCCCC
Q 010280          479 AEARKSRDAERTAAQGEYIRQTGQIPSSHF  508 (514)
Q Consensus       479 AEArr~eq~~Ka~EkA~kiR~TGk~Pss~f  508 (514)
                      ++++|++++++++++|++||+||++|++||
T Consensus        82 aea~r~~~~~k~~ekA~~~R~tG~~P~~~f  111 (111)
T PF03763_consen   82 AEARRGEEIAKAEEKAAKIRATGKVPSKCF  111 (111)
T ss_pred             HHHHHhhHHHhHHHHHHHHHhCCCCCcccC
Confidence            999999999999999999999999999754

The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].

>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides

Probab=96.66  E-value=0.033  Score=50.02  Aligned_cols=79  Identities=27%  Similarity=0.352  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 010280          422 KREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYIRQT  500 (514)
Q Consensus       422 qREEaKI~AWEN~QKAKAEAemrKiE~KLEKkRA~a~EKm~NKLA~a~rkAEEkRA~AEArr~eq~~Ka~EkA~kiR~T  500 (514)
                      +..+++|.+||..+++|+....++.|.++.-==..--.|..-+|..+..+.|.+|+.+.++-.+.+..+..+|.-.|..
T Consensus         3 ~~~~a~a~aWe~ae~aK~~~r~~ree~~I~aWEn~qkaKaea~m~k~E~klEkkra~a~ek~~nkia~~~~~Aee~Ra~   81 (111)
T PF03763_consen    3 EEVEAKADAWEEAEKAKINNRYEREEAKIQAWENLQKAKAEAEMRKIEEKLEKKRAKALEKMKNKIARAHKKAEEKRAA   81 (111)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3468999999999999999999999987642211122233445566778889999999999999999888888877764

The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].

>PRK09174 F0F1 ATP synthase subunit B'; Validated

Probab=83.59  E-value=28  Score=34.29  Aligned_cols=44  Identities=34%  Similarity=0.291  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 010280          448 AEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTA  491 (514)
Q Consensus       448 ~KLEKkRA~a~EKm~NKLA~a~rkAEEkRA~AEArr~eq~~Ka~  491 (514)
                      ...+..+..+.+.+...++.++...+..|..+...-...+..++
T Consensus       134 ~~~e~~~~~a~~ea~~~l~~Ae~~I~~ek~~A~~el~~~a~e~A  177 (204)
T PRK09174        134 AKAEAERAAIEASLEKKLKEAEARIAAIKAKAMADVGSIAEETA  177 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555556666666666666666655555555544443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	514
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	1e-08
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	2e-04
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	2e-04
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	8e-04

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 56.7 bits (136), Expect = 1e-08
 Identities = 26/170 (15%), Positives = 65/170 (38%), Gaps = 1/170 (0%)

Query: 326 TPMEQTGIDESQHPVENSKRDLSEQEIKEKTRREIVALGVQLGKMNIAAWASKDEQGKNT 385
           + ++   ++       ++ +   +  I+  T  +  A   +  ++   A   + E+ K  
Sbjct: 636 SSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEA-RGRLERQKIL 694

Query: 386 SSAEKNSDMEELERIEYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRR 445
             +E     +EL  +E    A       K++  +R +   I+ +    + K K +A    
Sbjct: 695 DQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIE 754

Query: 446 IEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGE 495
            EAE+E+++   + +++   +       + +  A     +  E T A G 
Sbjct: 755 TEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGP 804

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 24/185 (12%), Positives = 55/185 (29%), Gaps = 10/185 (5%)

Query: 322 APASTPMEQ---TGIDESQHPVENSKRDLSEQEIKEKTRREIVALGVQLGKMNIAAWASK 378
           A AS   +          +  V   +             +           + ++   S 
Sbjct: 582 AVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVS---SV 638

Query: 379 DEQGKNTSSAEKNSDMEELERIEYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAK 438
           D Q            ++   ++  E        ++++      +R E + +    RQK  
Sbjct: 639 DVQSVEPVDQRTRDALQRSVQLAIEITT----NSQEAAAKHEAQRLEQEARGRLERQKIL 694

Query: 439 LEAEMRRIEAEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAERTAAQGEYIR 498
            ++E  +   E+ ++ A + A      + +   S  + A  E   S    +  AQ   I 
Sbjct: 695 DQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIE 754

Query: 499 QTGQI 503
              ++
Sbjct: 755 TEAEL 759

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 30/156 (19%), Positives = 55/156 (35%), Gaps = 5/156 (3%)

Query: 349 EQEIKEKTRREIVALGVQLGKMNIAAWASKDEQGKNTSSAEKNSDMEELERIEYEKRASA 408
            Q     +  ++ ++     +   A   S     + T+++++ +   E +R+E E R   
Sbjct: 629 PQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRL 688

Query: 409 -----WAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIEAEVEQIRAQAQAKMVK 463
                  ++E  K        E    A ES   AK EAE R   A +E   +  QAK+  
Sbjct: 689 ERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKA 748

Query: 464 KISMSRQRSEEKRAAAEARKSRDAERTAAQGEYIRQ 499
           +       +E +R            R   + E  + 
Sbjct: 749 QALAIETEAELERVKKVREMELIYARAQLELEVSKA 784

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 42.5 bits (99), Expect = 3e-04
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 12/192 (6%)

Query: 319 RGRAPASTPMEQTGIDESQHPVENSKRDLSEQEIKEKTRREIVALGVQLGKMNIAAWASK 378
           +   P             Q  +E +          E  R E  A G +L +  I   +  
Sbjct: 641 QSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARG-RLERQKILDQSEA 699

Query: 379 DEQGKNTSSAEKNSDMEELERIEYEKRASAWAEAEKSKHIARFKREEIKIQAWE------ 432
           ++  K     E  S   E      +  A + AEA + +      + ++K QA        
Sbjct: 700 EKARKELLELEAMSMAVESTGNA-KAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAE 758

Query: 433 -SRQKAKLEAEMRRI--EAEVEQIRAQAQAKM-VKKISMSRQRSEEKRAAAEARKSRDAE 488
             R K   E E+     + E+E  +AQ  A +  KK     +          A    + +
Sbjct: 759 LERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQ 818

Query: 489 RTAAQGEYIRQT 500
               Q   ++ T
Sbjct: 819 VKLLQSLGLKST 830

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 5e-04
 Identities = 78/514 (15%), Positives = 137/514 (26%), Gaps = 159/514 (30%)

Query: 7   HHNRKKDGSNSNSARTSPSRLDDSE--FVRNSLLNGGFD----DEAPSLEVASEKGAGEV 60
           HH+   D             L   E  FV N      FD     + P   + S++   E+
Sbjct: 2   HHHHHMDFETGEHQYQYKDILSVFEDAFVDN------FDCKDVQDMPK-SILSKE---EI 51

Query: 61  --VLGHNQGEQASFQPNETLPRENTEVSRVKMQQFSKGDSVNLSAIHPMRMHEDDNLDYD 118
             ++        + +   TL  +  E+    +Q+F               + E   ++Y 
Sbjct: 52  DHIIMSKDAVSGTLRLFWTLLSKQEEM----VQKF---------------VEEVLRINYK 92

Query: 119 SNASSSSFEFHKGERSMQNHMARSFSRPMPSKWNDAEKWI-MNRQIIQANYAKKNALHNQ 177
              S    E    + SM   M       +   +ND + +   N   +Q        L   
Sbjct: 93  FLMSPIKTEQR--QPSMMTRMYIEQRDRL---YNDNQVFAKYNVSRLQ----PYLKLRQA 143

Query: 178 ANRL-PATNMVRVVPEYGTYDH------KPSTVRAADT-------KRVDF---------C 214
              L PA N++  +              K  T  A D         ++DF         C
Sbjct: 144 LLELRPAKNVL--I-------DGVLGSGK--TWVALDVCLSYKVQCKMDFKIFWLNLKNC 192

Query: 215 QTASHTLEK-----FSFVPSGTHQAHGGNAMIDSCTQSKD-----------------LEE 252
            +    LE      +   P+ T ++   + +       +                  L  
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252

Query: 253 V-----IQT-DVPC-----TKSSSENESVVPAIRS-VCMRDMGTEMTPVASQE------- 293
           V         ++ C     T+     + +  A  + + +      +TP   +        
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 294 ------PSRTATPVGATTPLRSPTSSIPSTPRGRAPASTPMEQTGIDESQHPVENSKRDL 347
                 P    T    T P R   S I  + R         +    D+    +E+S   L
Sbjct: 313 CRPQDLPREVLT----TNPRR--LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366

Query: 348 SEQEIKEKTRREIVALGVQLGKMNIAA------WASKDEQG--------KNTSSAEKNSD 393
              E     R+    L V     +I        W    +             S  EK   
Sbjct: 367 EPAEY----RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422

Query: 394 ME--ELERIEYEKRASAWAEAEKSKH---IARFK 422
                +  I  E +     E E + H   +  + 
Sbjct: 423 ESTISIPSIYLELKVK--LENEYALHRSIVDHYN 454

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 39.8 bits (92), Expect = 8e-04
 Identities = 14/101 (13%), Positives = 35/101 (34%), Gaps = 23/101 (22%)

Query: 388 AEKNSDMEELERIEYEKRASAWAEAEKSKHIARFKREEIKIQAWESRQKAKLEAEMRRIE 447
           A+ +   +E E I        W E E+ K +   + +           + +   + ++  
Sbjct: 75  AQADRLTQEPESIR------KWRE-EQRKRLQ--ELDAA-----SKVMEQEWREKAKK-- 118

Query: 448 AEVEQIRAQAQAKMVKKISMSRQRSEEKRAAAEARKSRDAE 488
            ++E+   +   ++ K    +R       A     +  DA+
Sbjct: 119 -DLEEWNQRQSEQVEKNKINNRI------ADKAFYQQPDAD 152

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00