Citrus Sinensis ID: 010290

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510---
MAMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVALIKSSRNLVLNSVLSLLKNAGIDAVFYMETRH
ccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHcc
ccccccccHHHHHHHHHcccccHHHHHHHHHcHHHHHHHccHHHHHHcHHHHHHHcccccHHHHHHHHHHHccccHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHccHHHHHHHHHHHccHHHHHHHcHHHHHHHHccccHHHHHHHHHcHHHHHHHHcHHHHHHcHHHHHHHHHccccHHHHHHHHccHHHHHHcccccHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHcHHHHHHccccccHHHHHHHHHHHHccccEEEEEEccc
mamideplyPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELipflsenndddDEVLLAMAEELGVFipyvggleyanvllppletlctveetcVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSscglfhvaypsapeALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGalgkllepqdcvahILPVIVNFSQDKSWRVRYMVANQLYELCEavgpeptrsdvvpAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCvkelssdssQHVRSALATVIMGmapilgkdatIEQLLPIFLSLlkdefpdvRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAsqlgvgffddKLGALCMQWLKDKVYSIRDAAANNVKRLAEefgpdwamqhiVPQVALIKSSRNLVLNSVLSLLKNAGIDAVFYMETRH
mamideplYPIAVLIDELKNDDIQLRLNSIRRLSTIaralgeertrkelipflsennddDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIgsqmreqdvVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCeavgpeptrsdVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVALIKSSRNLVLNSVLSllknagidavFYMETRH
MAMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVALIKSSRnlvlnsvlsllKNAGIDAVFYMETRH
******PLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLS*****DDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELS*****HVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVALIKSSRNLVLNSVLSLLKNAGIDAVFYM****
*AM*DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVALIKSSRNLVLNSVLSLLKNAGIDAVFYMETR*
MAMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKE*********RSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVALIKSSRNLVLNSVLSLLKNAGIDAVFYMETRH
*****EPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVALIKSSRNLVLNSVLSLLKNAGIDAVFYMET**
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MAMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVALIKSSRNLVLNSVLSLLKNAGIDAVFYMETRH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query513 2.2.26 [Sep-21-2011]
Q38950587 Serine/threonine-protein yes no 0.857 0.749 0.918 0.0
Q38951587 Serine/threonine-protein no no 0.857 0.749 0.902 0.0
Q38845588 Serine/threonine-protein no no 0.857 0.748 0.877 0.0
Q32PI5589 Serine/threonine-protein yes no 0.943 0.821 0.608 1e-171
P54612589 Serine/threonine-protein yes no 0.943 0.821 0.608 1e-171
Q76MZ3589 Serine/threonine-protein yes no 0.943 0.821 0.608 1e-171
P30153589 Serine/threonine-protein yes no 0.943 0.821 0.608 1e-171
P54613602 Serine/threonine-protein no no 0.943 0.803 0.602 1e-167
Q4QQT4601 Serine/threonine-protein no no 0.943 0.805 0.598 1e-165
Q7TNP2601 Serine/threonine-protein no no 0.937 0.800 0.6 1e-165
>sp|Q38950|2AAB_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Arabidopsis thaliana GN=PP2AA2 PE=1 SV=2 Back     alignment and function desciption
 Score =  926 bits (2393), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/480 (91%), Positives = 471/480 (98%)

Query: 1   MAMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           M+MIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct: 1   MSMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQ 120
           DEVLLAMAEELGVFIPYVGG+EYA+VLLPPLETL TVEETCVR+KAVESLCR+GSQMRE 
Sbjct: 61  DEVLLAMAEELGVFIPYVGGVEYAHVLLPPLETLSTVEETCVREKAVESLCRVGSQMRES 120

Query: 121 DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVR 180
           D+V+HFI LVKRLAAGEWFTARVS+CG+FH+AYPSAP+ LKTELR++Y QLCQDDMPMVR
Sbjct: 121 DLVDHFISLVKRLAAGEWFTARVSACGVFHIAYPSAPDMLKTELRSLYTQLCQDDMPMVR 180

Query: 181 RSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVA 240
           R+AATNLGKFAATVE+AHLK+++MS+FE+LTQDDQDSVRLLAVEGC ALGKLLEPQDCV 
Sbjct: 181 RAAATNLGKFAATVESAHLKTDVMSMFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVQ 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR+++VPAYVRLLRDNEAEVRIAA
Sbjct: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAA 300

Query: 301 AGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360
           AGKVTK CRILNPE+AIQHILPCVKELSSDSSQHVRSALA+VIMGMAP+LGKDATIE LL
Sbjct: 301 AGKVTKFCRILNPEIAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480
           IPLLASQLGVGFFDDKLGALCMQWL+DKV+SIRDAAANN+KRLAEEFGP+WAMQHIVPQV
Sbjct: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVHSIRDAAANNLKRLAEEFGPEWAMQHIVPQV 480
The A subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Involved during developmental process such as seedling and floral developments. Seems to act as a negative regulator of PP2A catalytic activity.
Arabidopsis thaliana (taxid: 3702)
>sp|Q38951|2AAG_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A gamma isoform OS=Arabidopsis thaliana GN=PP2AA3 PE=1 SV=2 Back     alignment and function description
>sp|Q38845|2AAA_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Arabidopsis thaliana GN=PP2AA1 PE=1 SV=1 Back     alignment and function description
>sp|Q32PI5|2AAA_BOVIN Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Bos taurus GN=PPP2R1A PE=1 SV=1 Back     alignment and function description
>sp|P54612|2AAA_PIG Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Sus scrofa GN=PPP2R1A PE=2 SV=2 Back     alignment and function description
>sp|Q76MZ3|2AAA_MOUSE Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Mus musculus GN=Ppp2r1a PE=1 SV=3 Back     alignment and function description
>sp|P30153|2AAA_HUMAN Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Homo sapiens GN=PPP2R1A PE=1 SV=4 Back     alignment and function description
>sp|P54613|2AAB_PIG Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform (Fragment) OS=Sus scrofa GN=PPP2R1B PE=2 SV=1 Back     alignment and function description
>sp|Q4QQT4|2AAB_RAT Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Rattus norvegicus GN=Ppp2r1b PE=2 SV=1 Back     alignment and function description
>sp|Q7TNP2|2AAB_MOUSE Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Mus musculus GN=Ppp2r1b PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query513
225455902587 PREDICTED: serine/threonine-protein phos 0.855 0.747 0.954 0.0
297734191 642 unnamed protein product [Vitis vinifera] 0.855 0.683 0.954 0.0
224115920587 predicted protein [Populus trichocarpa] 0.855 0.747 0.943 0.0
356520585587 PREDICTED: serine/threonine-protein phos 0.857 0.749 0.935 0.0
255541788587 serine/threonine protein phosphatase 2a 0.855 0.747 0.943 0.0
449434642587 PREDICTED: serine/threonine-protein phos 0.781 0.683 0.935 0.0
255576493587 serine/threonine protein phosphatase 2a 0.857 0.749 0.931 0.0
356531210587 PREDICTED: serine/threonine-protein phos 0.861 0.752 0.929 0.0
11094367587 Ser/Thr specific protein phosphatase 2A 0.857 0.749 0.922 0.0
353259711587 serine/threonine protein phosphatase 2a 0.855 0.747 0.931 0.0
>gi|225455902|ref|XP_002276180.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform [Vitis vinifera] Back     alignment and taxonomy information
 Score =  948 bits (2451), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/480 (95%), Positives = 473/480 (98%)

Query: 1   MAMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           MAMIDEPLYPIAVLIDELKN+DIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct: 1   MAMIDEPLYPIAVLIDELKNEDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQ 120
           DEVLLAMAEELGVFIPYVGG+E+ANVLLPPLETLCTVEETCVRDKAVESLCRIG+QMRE 
Sbjct: 61  DEVLLAMAEELGVFIPYVGGVEHANVLLPPLETLCTVEETCVRDKAVESLCRIGAQMREP 120

Query: 121 DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVR 180
           D+VE FIPLVKRLAAGEWFTARVSSCGLFH+AYPSAPE LKTELR IY QLCQDDMPMVR
Sbjct: 121 DLVESFIPLVKRLAAGEWFTARVSSCGLFHIAYPSAPETLKTELRAIYSQLCQDDMPMVR 180

Query: 181 RSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVA 240
           RSAA+NLGKFAATVEAAHLK++IMSIFE+LTQDDQDSVRLLAVEGC ALGKLLEPQDCVA
Sbjct: 181 RSAASNLGKFAATVEAAHLKADIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSD+VPAYVRLLRDNEAEVRIAA
Sbjct: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDLVPAYVRLLRDNEAEVRIAA 300

Query: 301 AGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360
           AGKVTK CRILNPELAIQHILPCVKELSSDSSQHVRSALA+VIMGMAP+LGKDATI+QLL
Sbjct: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIDQLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480
           IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHI+PQV
Sbjct: 421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIIPQV 480

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297734191|emb|CBI15438.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224115920|ref|XP_002332045.1| predicted protein [Populus trichocarpa] gi|222875342|gb|EEF12473.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356520585|ref|XP_003528942.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Glycine max] Back     alignment and taxonomy information
>gi|255541788|ref|XP_002511958.1| serine/threonine protein phosphatase 2a regulatory subunit A, putative [Ricinus communis] gi|223549138|gb|EEF50627.1| serine/threonine protein phosphatase 2a regulatory subunit A, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449434642|ref|XP_004135105.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Cucumis sativus] gi|449493464|ref|XP_004159301.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255576493|ref|XP_002529138.1| serine/threonine protein phosphatase 2a regulatory subunit A, putative [Ricinus communis] gi|223531417|gb|EEF33251.1| serine/threonine protein phosphatase 2a regulatory subunit A, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356531210|ref|XP_003534171.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Glycine max] Back     alignment and taxonomy information
>gi|11094367|gb|AAG29594.1|AF196287_1 Ser/Thr specific protein phosphatase 2A A regulatory subunit beta isoform [Medicago sativa subsp. x varia] Back     alignment and taxonomy information
>gi|353259711|gb|AEQ75494.1| serine/threonine protein phosphatase 2a regulatory subunit A [Rosa multiflora] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query513
TAIR|locus:2085994587 PP2AA2 "protein phosphatase 2A 0.935 0.817 0.918 1.2e-237
TAIR|locus:2205354587 PP2AA3 "AT1G13320" [Arabidopsi 0.935 0.817 0.902 1.5e-232
TAIR|locus:2031165588 RCN1 "AT1G25490" [Arabidopsis 0.935 0.816 0.877 3e-227
UNIPROTKB|A5D973589 PPP2R1A "Alpha isoform of regu 0.927 0.808 0.616 2.2e-153
UNIPROTKB|Q32PI5589 PPP2R1A "Serine/threonine-prot 0.927 0.808 0.616 2.2e-153
UNIPROTKB|P30153589 PPP2R1A "Serine/threonine-prot 0.927 0.808 0.616 3.6e-153
UNIPROTKB|F1PX75589 PPP2R1A "Uncharacterized prote 0.927 0.808 0.616 4.5e-153
UNIPROTKB|P54612589 PPP2R1A "Serine/threonine-prot 0.927 0.808 0.616 4.5e-153
MGI|MGI:1926334589 Ppp2r1a "protein phosphatase 2 0.927 0.808 0.616 4.5e-153
RGD|620907589 Ppp2r1a "protein phosphatase 2 0.927 0.808 0.616 4.5e-153
TAIR|locus:2085994 PP2AA2 "protein phosphatase 2A subunit A2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2291 (811.5 bits), Expect = 1.2e-237, P = 1.2e-237
 Identities = 441/480 (91%), Positives = 471/480 (98%)

Query:     1 MAMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
             M+MIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct:     1 MSMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query:    61 DEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQ 120
             DEVLLAMAEELGVFIPYVGG+EYA+VLLPPLETL TVEETCVR+KAVESLCR+GSQMRE 
Sbjct:    61 DEVLLAMAEELGVFIPYVGGVEYAHVLLPPLETLSTVEETCVREKAVESLCRVGSQMRES 120

Query:   121 DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVR 180
             D+V+HFI LVKRLAAGEWFTARVS+CG+FH+AYPSAP+ LKTELR++Y QLCQDDMPMVR
Sbjct:   121 DLVDHFISLVKRLAAGEWFTARVSACGVFHIAYPSAPDMLKTELRSLYTQLCQDDMPMVR 180

Query:   181 RSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVA 240
             R+AATNLGKFAATVE+AHLK+++MS+FE+LTQDDQDSVRLLAVEGC ALGKLLEPQDCV 
Sbjct:   181 RAAATNLGKFAATVESAHLKTDVMSMFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVQ 240

Query:   241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAA 300
             HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR+++VPAYVRLLRDNEAEVRIAA
Sbjct:   241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAA 300

Query:   301 AGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360
             AGKVTK CRILNPE+AIQHILPCVKELSSDSSQHVRSALA+VIMGMAP+LGKDATIE LL
Sbjct:   301 AGKVTKFCRILNPEIAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLL 360

Query:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
             PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query:   421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480
             IPLLASQLGVGFFDDKLGALCMQWL+DKV+SIRDAAANN+KRLAEEFGP+WAMQHIVPQV
Sbjct:   421 IPLLASQLGVGFFDDKLGALCMQWLQDKVHSIRDAAANNLKRLAEEFGPEWAMQHIVPQV 480
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0005886 "plasma membrane" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0000902 "cell morphogenesis" evidence=RCA
GO:0016049 "cell growth" evidence=RCA
GO:0048193 "Golgi vesicle transport" evidence=RCA
GO:0008601 "protein phosphatase type 2A regulator activity" evidence=ISS
GO:0042325 "regulation of phosphorylation" evidence=ISS
TAIR|locus:2205354 PP2AA3 "AT1G13320" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031165 RCN1 "AT1G25490" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|A5D973 PPP2R1A "Alpha isoform of regulatory subunit A, protein phosphatase 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q32PI5 PPP2R1A "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P30153 PPP2R1A "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PX75 PPP2R1A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P54612 PPP2R1A "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1926334 Ppp2r1a "protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|620907 Ppp2r1a "protein phosphatase 2, regulatory subunit A, alpha" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P361792AAA_DROMENo assigned EC number0.59380.94340.8189yesno
Q54QR92AAA_DICDINo assigned EC number0.59040.93560.8219yesno
Q32PI52AAA_BOVINNo assigned EC number0.60860.94340.8217yesno
P301532AAA_HUMANNo assigned EC number0.60860.94340.8217yesno
P546122AAA_PIGNo assigned EC number0.60860.94340.8217yesno
Q095432AAA_CAEELNo assigned EC number0.52550.94150.8186yesno
Q389502AAB_ARATHNo assigned EC number0.91870.85760.7495yesno
Q389512AAG_ARATHNo assigned EC number0.90200.85760.7495nono
Q76MZ32AAA_MOUSENo assigned EC number0.60860.94340.8217yesno
Q9UT082AAA_SCHPONo assigned EC number0.53000.93760.8152yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00017658001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (587 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00021809001
SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (334 aa)
    • • 0.462
GSVIVG00015198001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (388 aa)
    • • 0.445
GSVIVG00015211001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (384 aa)
    • • 0.423
GSVIVG00034201001
SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (491 aa)
    ••• 0.422
GSVIVG00016600001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (471 aa)
    ••• 0.413

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query513
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 1e-04
pfam1364688 pfam13646, HEAT_2, HEAT repeats 0.002
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information 
 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 20/107 (18%), Positives = 40/107 (37%), Gaps = 6/107 (5%)

Query: 278 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAI---QHILPCVKELSSDSSQH 334
           ++  +PA V LL  ++  V+  AA  ++ +    N  +        LP + +L     + 
Sbjct: 5   QAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEE 64

Query: 335 VRS-ALATV--IMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNI 378
           V   AL  +  +                +P  ++LL     D++ N 
Sbjct: 65  VVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNA 111

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120
>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 513
KOG0211 759 consensus Protein phosphatase 2A regulatory subuni 100.0
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 100.0
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 100.0
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 99.97
KOG2023 885 consensus Nuclear transport receptor Karyopherin-b 99.96
KOG1241 859 consensus Karyopherin (importin) beta 1 [Nuclear s 99.96
KOG2023 885 consensus Nuclear transport receptor Karyopherin-b 99.94
KOG0213 1172 consensus Splicing factor 3b, subunit 1 [RNA proce 99.92
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 99.91
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 99.89
COG5215 858 KAP95 Karyopherin (importin) beta [Intracellular t 99.88
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 99.88
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.86
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 99.86
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.86
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 99.86
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 99.85
PRK09687280 putative lyase; Provisional 99.85
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 99.85
KOG1242569 consensus Protein containing adaptin N-terminal re 99.84
PRK09687280 putative lyase; Provisional 99.84
KOG1242569 consensus Protein containing adaptin N-terminal re 99.84
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.84
KOG0212 675 consensus Uncharacterized conserved protein [Funct 99.83
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.83
KOG1824 1233 consensus TATA-binding protein-interacting protein 99.83
COG5215 858 KAP95 Karyopherin (importin) beta [Intracellular t 99.82
KOG1824 1233 consensus TATA-binding protein-interacting protein 99.82
KOG0212 675 consensus Uncharacterized conserved protein [Funct 99.8
PTZ00429 746 beta-adaptin; Provisional 99.8
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 99.77
PTZ00429 746 beta-adaptin; Provisional 99.75
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 99.71
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 99.71
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 99.69
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 99.69
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 99.66
KOG4224550 consensus Armadillo repeat protein VAC8 required f 99.61
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 99.54
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 99.54
KOG1061 734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 99.49
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 99.46
KOG4224550 consensus Armadillo repeat protein VAC8 required f 99.45
KOG2259 823 consensus Uncharacterized conserved protein [Funct 99.39
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 99.39
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 99.37
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 99.36
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 99.36
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 99.36
COG1413335 FOG: HEAT repeat [Energy production and conversion 99.36
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 99.33
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 99.33
KOG2259 823 consensus Uncharacterized conserved protein [Funct 99.32
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 99.31
KOG1061 734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 99.3
COG1413335 FOG: HEAT repeat [Energy production and conversion 99.29
TIGR02270 410 conserved hypothetical protein. Members are found 99.27
TIGR02270410 conserved hypothetical protein. Members are found 99.27
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 99.23
COG5096 757 Vesicle coat complex, various subunits [Intracellu 99.19
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 99.15
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 99.15
KOG1243690 consensus Protein kinase [General function predict 99.14
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 99.13
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 99.12
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 99.1
KOG1243 690 consensus Protein kinase [General function predict 99.07
KOG1991 1010 consensus Nuclear transport receptor RANBP7/RANBP8 99.05
KOG1248 1176 consensus Uncharacterized conserved protein [Funct 99.05
KOG1991 1010 consensus Nuclear transport receptor RANBP7/RANBP8 99.04
KOG1248 1176 consensus Uncharacterized conserved protein [Funct 99.02
KOG1078 865 consensus Vesicle coat complex COPI, gamma subunit 98.94
KOG1078 865 consensus Vesicle coat complex COPI, gamma subunit 98.92
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 98.91
KOG4413524 consensus 26S proteasome regulatory complex, subun 98.9
KOG1820 815 consensus Microtubule-associated protein [Cytoskel 98.89
COG5096 757 Vesicle coat complex, various subunits [Intracellu 98.89
KOG1077 938 consensus Vesicle coat complex AP-2, alpha subunit 98.87
KOG1992 960 consensus Nuclear export receptor CSE1/CAS (import 98.87
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 98.85
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 98.83
KOG1077 938 consensus Vesicle coat complex AP-2, alpha subunit 98.82
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 98.81
KOG1820 815 consensus Microtubule-associated protein [Cytoskel 98.79
KOG2062 929 consensus 26S proteasome regulatory complex, subun 98.78
KOG4535728 consensus HEAT and armadillo repeat-containing pro 98.78
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 98.7
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 98.69
KOG2137 700 consensus Protein kinase [Signal transduction mech 98.68
KOG1992 960 consensus Nuclear export receptor CSE1/CAS (import 98.67
KOG2137700 consensus Protein kinase [Signal transduction mech 98.67
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 98.67
KOG0567289 consensus HEAT repeat-containing protein [General 98.65
PF05804708 KAP: Kinesin-associated protein (KAP) 98.64
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 98.63
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 98.6
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 98.6
PF05804708 KAP: Kinesin-associated protein (KAP) 98.59
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 98.59
KOG2032533 consensus Uncharacterized conserved protein [Funct 98.58
KOG2025 892 consensus Chromosome condensation complex Condensi 98.57
KOG0413 1529 consensus Uncharacterized conserved protein relate 98.56
KOG1293678 consensus Proteins containing armadillo/beta-caten 98.56
KOG0567289 consensus HEAT repeat-containing protein [General 98.56
KOG4535 728 consensus HEAT and armadillo repeat-containing pro 98.53
KOG4413524 consensus 26S proteasome regulatory complex, subun 98.52
KOG2032533 consensus Uncharacterized conserved protein [Funct 98.5
KOG4653982 consensus Uncharacterized conserved protein [Funct 98.44
KOG2274 1005 consensus Predicted importin 9 [Intracellular traf 98.43
KOG0413 1529 consensus Uncharacterized conserved protein relate 98.42
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 98.42
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 98.4
COG5116 926 RPN2 26S proteasome regulatory complex component [ 98.39
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 98.38
KOG2025 892 consensus Chromosome condensation complex Condensi 98.38
KOG2956516 consensus CLIP-associating protein [General functi 98.36
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 98.35
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 98.34
PF05004309 IFRD: Interferon-related developmental regulator ( 98.34
COG5218 885 YCG1 Chromosome condensation complex Condensin, su 98.32
KOG2274 1005 consensus Predicted importin 9 [Intracellular traf 98.32
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 98.3
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 98.29
KOG2062 929 consensus 26S proteasome regulatory complex, subun 98.26
PF05918 556 API5: Apoptosis inhibitory protein 5 (API5); Inter 98.23
KOG4653982 consensus Uncharacterized conserved protein [Funct 98.23
PF05004309 IFRD: Interferon-related developmental regulator ( 98.23
KOG2956516 consensus CLIP-associating protein [General functi 98.2
PF13001501 Ecm29: Proteasome stabiliser; InterPro: IPR024372 98.19
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 98.12
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 98.06
COG5218 885 YCG1 Chromosome condensation complex Condensin, su 98.05
KOG1949 1005 consensus Uncharacterized conserved protein [Funct 98.05
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 98.02
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 98.01
KOG1949 1005 consensus Uncharacterized conserved protein [Funct 98.01
KOG1822 2067 consensus Uncharacterized conserved protein [Funct 97.98
COG5116926 RPN2 26S proteasome regulatory complex component [ 97.96
KOG0414 1251 consensus Chromosome condensation complex Condensi 97.95
PF13001501 Ecm29: Proteasome stabiliser; InterPro: IPR024372 97.95
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 97.91
PF14500262 MMS19_N: Dos2-interacting transcription regulator 97.89
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 97.85
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 97.83
PF14500262 MMS19_N: Dos2-interacting transcription regulator 97.83
PLN03076 1780 ARF guanine nucleotide exchange factor (ARF-GEF); 97.81
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 97.74
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 97.74
KOG1517 1387 consensus Guanine nucleotide binding protein MIP1 97.72
KOG0414 1251 consensus Chromosome condensation complex Condensi 97.67
KOG1293 678 consensus Proteins containing armadillo/beta-caten 97.61
PLN03076 1780 ARF guanine nucleotide exchange factor (ARF-GEF); 97.59
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 97.51
smart00638574 LPD_N Lipoprotein N-terminal Domain. 97.48
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 97.47
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 97.45
COG5234 993 CIN1 Beta-tubulin folding cofactor D [Posttranslat 97.44
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 97.42
KOG1517 1387 consensus Guanine nucleotide binding protein MIP1 97.4
PF12530234 DUF3730: Protein of unknown function (DUF3730) ; I 97.39
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 97.33
KOG1822 2067 consensus Uncharacterized conserved protein [Funct 97.32
KOG2933334 consensus Uncharacterized conserved protein [Funct 97.23
smart00638574 LPD_N Lipoprotein N-terminal Domain. 97.22
COG5098 1128 Chromosome condensation complex Condensin, subunit 97.2
KOG45241014 consensus Uncharacterized conserved protein [Funct 97.16
PF12231372 Rif1_N: Rap1-interacting factor 1 N terminal; Inte 97.12
KOG0392 1549 consensus SNF2 family DNA-dependent ATPase domain- 97.12
KOG0891 2341 consensus DNA-dependent protein kinase [Replicatio 97.1
PF11864464 DUF3384: Domain of unknown function (DUF3384); Int 97.08
COG5656 970 SXM1 Importin, protein involved in nuclear import 97.07
KOG1993 978 consensus Nuclear transport receptor KAP120 (impor 97.07
KOG0392 1549 consensus SNF2 family DNA-dependent ATPase domain- 97.02
KOG2213460 consensus Apoptosis inhibitor 5/fibroblast growth 97.0
KOG2933334 consensus Uncharacterized conserved protein [Funct 96.99
KOG2021 980 consensus Nuclear mRNA export factor receptor LOS1 96.99
PF12530234 DUF3730: Protein of unknown function (DUF3730) ; I 96.98
PF12074339 DUF3554: Domain of unknown function (DUF3554); Int 96.93
PF11864464 DUF3384: Domain of unknown function (DUF3384); Int 96.93
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 96.92
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 96.91
KOG1048717 consensus Neural adherens junction protein Plakoph 96.86
PF1036392 DUF2435: Protein of unknown function (DUF2435) 96.8
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 96.75
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 96.74
KOG2011 1048 consensus Sister chromatid cohesion complex Cohesi 96.66
PF13251182 DUF4042: Domain of unknown function (DUF4042) 96.63
PF13251182 DUF4042: Domain of unknown function (DUF4042) 96.62
PF1036392 DUF2435: Protein of unknown function (DUF2435) 96.61
KOG1993978 consensus Nuclear transport receptor KAP120 (impor 96.57
KOG4500 604 consensus Rho/Rac GTPase guanine nucleotide exchan 96.56
cd08050343 TAF6 TATA Binding Protein (TBP) Associated Factor 96.54
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 96.49
PF08569335 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro 96.48
PF12074339 DUF3554: Domain of unknown function (DUF3554); Int 96.45
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 96.43
PF11865160 DUF3385: Domain of unknown function (DUF3385); Int 96.43
KOG18511710 consensus Uncharacterized conserved protein [Funct 96.37
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 96.28
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 96.28
PF12054441 DUF3535: Domain of unknown function (DUF3535); Int 96.26
KOG0889 3550 consensus Histone acetyltransferase SAGA, TRRAP/TR 96.1
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 96.09
KOG2011 1048 consensus Sister chromatid cohesion complex Cohesi 96.05
PF08713213 DNA_alkylation: DNA alkylation repair enzyme; Inte 95.99
KOG18511710 consensus Uncharacterized conserved protein [Funct 95.89
PF11701157 UNC45-central: Myosin-binding striated muscle asse 95.83
KOG2005878 consensus 26S proteasome regulatory complex, subun 95.82
PF04118307 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do 95.79
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 95.68
cd08050343 TAF6 TATA Binding Protein (TBP) Associated Factor 95.67
PF11865160 DUF3385: Domain of unknown function (DUF3385); Int 95.64
PF10521282 DUF2454: Protein of unknown function (DUF2454); In 95.62
KOG2021 980 consensus Nuclear mRNA export factor receptor LOS1 95.57
PF04118307 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do 95.52
PF14868559 DUF4487: Domain of unknown function (DUF4487) 95.46
KOG2022 982 consensus Nuclear transport receptor LGL2 (importi 95.45
PF08713213 DNA_alkylation: DNA alkylation repair enzyme; Inte 95.45
COG5656970 SXM1 Importin, protein involved in nuclear import 95.43
KOG2149 393 consensus Uncharacterized conserved protein [Funct 95.42
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 95.34
PF12054441 DUF3535: Domain of unknown function (DUF3535); Int 95.3
KOG2022982 consensus Nuclear transport receptor LGL2 (importi 95.29
KOG2081559 consensus Nuclear transport regulator [Intracellul 95.17
PF12231372 Rif1_N: Rap1-interacting factor 1 N terminal; Inte 95.15
PF10521282 DUF2454: Protein of unknown function (DUF2454); In 95.14
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 95.13
KOG0803 1312 consensus Predicted E3 ubiquitin ligase [Posttrans 95.02
KOG2973353 consensus Uncharacterized conserved protein [Funct 95.01
PF08167165 RIX1: rRNA processing/ribosome biogenesis 94.94
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 94.94
KOG0891 2341 consensus DNA-dependent protein kinase [Replicatio 94.79
PF08569335 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro 94.76
KOG2549 576 consensus Transcription initiation factor TFIID, s 94.68
PF08167165 RIX1: rRNA processing/ribosome biogenesis 94.48
KOG1848 1610 consensus Uncharacterized conserved protein [Funct 94.46
PF05536543 Neurochondrin: Neurochondrin 94.37
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 94.35
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 94.31
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 94.28
KOG0803 1312 consensus Predicted E3 ubiquitin ligase [Posttrans 94.1
KOG2973 353 consensus Uncharacterized conserved protein [Funct 94.06
COG5095450 TAF6 Transcription initiation factor TFIID, subuni 94.03
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 93.95
COG5098 1128 Chromosome condensation complex Condensin, subunit 93.94
KOG2149393 consensus Uncharacterized conserved protein [Funct 93.94
KOG1848 1610 consensus Uncharacterized conserved protein [Funct 93.89
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 93.79
KOG2549576 consensus Transcription initiation factor TFIID, s 93.63
KOG2122 2195 consensus Beta-catenin-binding protein APC, contai 93.56
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 93.55
KOG0889 3550 consensus Histone acetyltransferase SAGA, TRRAP/TR 93.49
KOG2213460 consensus Apoptosis inhibitor 5/fibroblast growth 93.44
PF0757192 DUF1546: Protein of unknown function (DUF1546); In 93.41
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 93.39
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 93.37
KOG45241014 consensus Uncharacterized conserved protein [Funct 93.32
PF08389148 Xpo1: Exportin 1-like protein; InterPro: IPR013598 93.32
PF05536 543 Neurochondrin: Neurochondrin 93.32
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 93.19
PF14868559 DUF4487: Domain of unknown function (DUF4487) 93.14
KOG2081559 consensus Nuclear transport regulator [Intracellul 93.07
cd06561197 AlkD_like A new structural DNA glycosylase. This d 93.03
PF1276542 Cohesin_HEAT: HEAT repeat associated with sister c 92.97
KOG2229 616 consensus Protein required for actin cytoskeleton 92.97
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 92.86
cd03561133 VHS VHS domain family; The VHS domain is present i 92.79
PF08389148 Xpo1: Exportin 1-like protein; InterPro: IPR013598 92.57
KOG2038 988 consensus CAATT-binding transcription factor/60S r 92.57
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 92.31
PF0757192 DUF1546: Protein of unknown function (DUF1546); In 92.3
PF1276542 Cohesin_HEAT: HEAT repeat associated with sister c 92.08
PF08161198 NUC173: NUC173 domain; InterPro: IPR012978 This is 92.06
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 92.0
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 91.95
KOG2005878 consensus 26S proteasome regulatory complex, subun 91.93
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 91.9
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 91.86
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 91.62
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 91.53
PF11701157 UNC45-central: Myosin-binding striated muscle asse 91.48
KOG4500604 consensus Rho/Rac GTPase guanine nucleotide exchan 91.45
PF08623169 TIP120: TATA-binding protein interacting (TIP20); 91.3
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 91.24
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 91.14
PF08161198 NUC173: NUC173 domain; InterPro: IPR012978 This is 90.71
cd06561197 AlkD_like A new structural DNA glycosylase. This d 90.21
PF05997217 Nop52: Nucleolar protein,Nop52; InterPro: IPR01030 90.02
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 89.99
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 89.9
cd00197115 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil 89.72
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 89.26
cd07064208 AlkD_like_1 A new structural DNA glycosylase conta 88.73
KOG2153704 consensus Protein involved in the nuclear export o 88.58
COG5101 1053 CRM1 Importin beta-related nuclear transport recep 88.56
PF14225262 MOR2-PAG1_C: Cell morphogenesis C-terminal 88.49
KOG3678 832 consensus SARM protein (with sterile alpha and arm 88.39
PF11935239 DUF3453: Domain of unknown function (DUF3453); Int 88.26
COG5537 740 IRR1 Cohesin [Cell division and chromosome partiti 88.24
smart00802107 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. 88.07
KOG1048717 consensus Neural adherens junction protein Plakoph 87.52
PF11935239 DUF3453: Domain of unknown function (DUF3453); Int 87.17
PF14222552 MOR2-PAG1_N: Cell morphogenesis N-terminal 87.16
cd03565141 VHS_Tom1 VHS domain family, Tom1 subfamily; The VH 86.69
PF08623169 TIP120: TATA-binding protein interacting (TIP20); 86.48
cd03561133 VHS VHS domain family; The VHS domain is present i 85.22
KOG18371621 consensus Uncharacterized conserved protein [Funct 84.39
PF0932486 DUF1981: Domain of unknown function (DUF1981); Int 84.2
smart0056730 EZ_HEAT E-Z type HEAT repeats. Present in subunits 83.31
COG5369 743 Uncharacterized conserved protein [Function unknow 83.03
PF12397121 U3snoRNP10: U3 small nucleolar RNA-associated prot 83.0
KOG4199461 consensus Uncharacterized conserved protein [Funct 82.62
smart0018541 ARM Armadillo/beta-catenin-like repeats. Approx. 4 82.54
PF12726 727 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The y 82.23
KOG1926 1129 consensus Predicted regulator of rRNA gene transcr 82.15
KOG3678 832 consensus SARM protein (with sterile alpha and arm 82.05
COG5369 743 Uncharacterized conserved protein [Function unknow 81.85
KOG1222 791 consensus Kinesin associated protein KAP [Intracel 81.63
PF12397121 U3snoRNP10: U3 small nucleolar RNA-associated prot 81.59
KOG1566342 consensus Conserved protein Mo25 [Function unknown 81.57
COG5095450 TAF6 Transcription initiation factor TFIID, subuni 80.74
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 80.51
cd03572122 ENTH_epsin_related ENTH domain, Epsin Related fami 80.32
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=3.8e-41  Score=330.38  Aligned_cols=490  Identities=55%  Similarity=0.855  Sum_probs=457.9

Q ss_pred             CCCCCcHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhhccCCchHHHHHHHHHhhcccccccCchhh
Q 010290            5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYA   84 (513)
Q Consensus         5 ~~~~~~i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~   84 (513)
                      ++.+++|..+++.++++|-..|..+.+-+.+++..+|.+.++.+++|++.+..++..+++..++..+|.+....|+..+.
T Consensus        78 ~~~~~~ia~l~~e~~~~di~~r~~~~~~l~~~a~~~~~~~tr~~lipf~~e~~~~~dev~~~~a~~~~~~~~~v~~~~~~  157 (759)
T KOG0211|consen   78 EDSLYPIAVLIDELSNTDIQLRLNSGRKLSNLALALGVERTRLELIPFLTEAEDDEDEVLLDLAEQLGTFLPDVGGPEYA  157 (759)
T ss_pred             ccccccHHHHhhccCchhhhhhhhhhccccchhhhcccchhhhhhhhHHHHhccchhHHHHHHHHHhcccchhccchhHH
Confidence            34699999999999999999999999999999999999999999999999944999999999999999999999999999


Q ss_pred             hhhhHHHHHhhccchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHH-HHHH
Q 010290           85 NVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA-LKTE  163 (513)
Q Consensus        85 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~-~~~~  163 (513)
                      ..+++.++.+..+.+..||+.+++.+..++...+++....++.|++..+..++....|..++.+++..+...+++ .+.+
T Consensus       158 ~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~e  237 (759)
T KOG0211|consen  158 HMLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRE  237 (759)
T ss_pred             HHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHH
Confidence            999999999999999999999999999999999998888899999999998888888999999999999998855 8999


Q ss_pred             HHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChh-hhhhhH
Q 010290          164 LRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ-DCVAHI  242 (513)
Q Consensus       164 l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~l  242 (513)
                      +.+.+.++++|.++.||.++++.++.+++.++.+...+.++|.+..+..|+.+.||.+|...+..+...+... +....+
T Consensus       238 lr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~  317 (759)
T KOG0211|consen  238 LRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSL  317 (759)
T ss_pred             HHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998877 777889


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhC----hHHHHH
Q 010290          243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN----PELAIQ  318 (513)
Q Consensus       243 ~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~----~~~~~~  318 (513)
                      .+.+.+..+|.+|.+|..++..+..+...+|.+....+..+.+...++|+.+++|.+++.-...+.....    .+...+
T Consensus       318 ~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~  397 (759)
T KOG0211|consen  318 TESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDS  397 (759)
T ss_pred             hHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchh
Confidence            9999999999999999999999999999999977778899999999999999999999999999988776    344556


Q ss_pred             hhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHH---HHHHhhhhhhhhhhh
Q 010290          319 HILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIIS---KLDQVNQVIGIDLLS  395 (513)
Q Consensus       319 ~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~---~l~~i~~~~~~~~~~  395 (513)
                      .++|.+..+..|.+..+|.+.+..+..+.+.+|.+.....+.|.+...++|..+.||.+...   .+.......|.+.+.
T Consensus       398 ~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s  477 (759)
T KOG0211|consen  398 SILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVS  477 (759)
T ss_pred             hhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhh
Confidence            77899999999999999999999999999999988888899999999999999999999994   444555667888889


Q ss_pred             hhHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhHhhh
Q 010290          396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQH  475 (513)
Q Consensus       396 ~~l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~  475 (513)
                      +..+|.+.++..|.+|++|.+.++.+..++...|.+++.+.+.+.+..++.|.+..+|++++..+..++..+|.+|....
T Consensus       478 ~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~  557 (759)
T KOG0211|consen  478 NSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLE  557 (759)
T ss_pred             hhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhhhcCcchHHHHH
Q 010290          476 IVPQVALIKSSRNLVLNSV  494 (513)
Q Consensus       476 i~~~L~~~~~~~~~~~r~~  494 (513)
                      ++|.+..+..+++|.+|++
T Consensus       558 ~i~k~L~~~~q~~y~~R~t  576 (759)
T KOG0211|consen  558 EIPKLLAMDLQDNYLVRMT  576 (759)
T ss_pred             hhHHHHHHhcCcccchhhH
Confidence            9999999999989999955

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG1243 consensus Protein kinase [General function prediction only] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1243 consensus Protein kinase [General function prediction only] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG2137 consensus Protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2137 consensus Protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1822 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton] Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG1822 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2933 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG4524 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] Back     alignment and domain information
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised Back     alignment and domain information
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG2933 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length Back     alignment and domain information
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] Back     alignment and domain information
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis Back     alignment and domain information
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length Back     alignment and domain information
>KOG1851 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised Back     alignment and domain information
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes Back     alignment and domain information
>KOG1851 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle Back     alignment and domain information
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length Back     alignment and domain information
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] Back     alignment and domain information
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) Back     alignment and domain information
>PF14868 DUF4487: Domain of unknown function (DUF4487) Back     alignment and domain information
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes Back     alignment and domain information
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2149 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised Back     alignment and domain information
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length Back     alignment and domain information
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2973 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] Back     alignment and domain information
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis Back     alignment and domain information
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>KOG1848 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2973 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG2149 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1848 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6) Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>KOG4524 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF14868 DUF4487: Domain of unknown function (DUF4487) Back     alignment and domain information
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd06561 AlkD_like A new structural DNA glycosylase Back     alignment and domain information
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion Back     alignment and domain information
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription] Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6) Back     alignment and domain information
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion Back     alignment and domain information
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [] Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle Back     alignment and domain information
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] Back     alignment and domain information
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [] Back     alignment and domain information
>cd06561 AlkD_like A new structural DNA glycosylase Back     alignment and domain information
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [] Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats Back     alignment and domain information
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion] Back     alignment and domain information
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal Back     alignment and domain information
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] Back     alignment and domain information
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised Back     alignment and domain information
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning] Back     alignment and domain information
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 Back     alignment and domain information
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] Back     alignment and domain information
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal Back     alignment and domain information
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein Back     alignment and domain information
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>KOG1837 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins Back     alignment and domain information
>smart00567 EZ_HEAT E-Z type HEAT repeats Back     alignment and domain information
>COG5369 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length Back     alignment and domain information
>KOG4199 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>smart00185 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes [] Back     alignment and domain information
>KOG1926 consensus Predicted regulator of rRNA gene transcription (MYB-binding protein) [Transcription] Back     alignment and domain information
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] Back     alignment and domain information
>COG5369 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length Back     alignment and domain information
>KOG1566 consensus Conserved protein Mo25 [Function unknown] Back     alignment and domain information
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query513
1b3u_A588 Crystal Structure Of Constant Regulatory Domain Of 1e-172
1b3u_A588 Crystal Structure Of Constant Regulatory Domain Of 6e-15
2ie3_A589 Structure Of The Protein Phosphatase 2a Core Enzyme 1e-172
2ie3_A589 Structure Of The Protein Phosphatase 2a Core Enzyme 6e-15
2iae_A589 Crystal Structure Of A Protein Phosphatase 2a (Pp2a 1e-172
2iae_A589 Crystal Structure Of A Protein Phosphatase 2a (Pp2a 8e-15
3fga_A588 Structural Basis Of Pp2a And Sgo Interaction Length 1e-172
3fga_A588 Structural Basis Of Pp2a And Sgo Interaction Length 8e-15
2pkg_A580 Structure Of A Complex Between The A Subunit Of Pro 1e-171
2pkg_A580 Structure Of A Complex Between The A Subunit Of Pro 6e-15
3dw8_A582 Structure Of A Protein Phosphatase 2a Holoenzyme Wi 1e-171
3dw8_A582 Structure Of A Protein Phosphatase 2a Holoenzyme Wi 6e-15
2nyl_A582 Crystal Structure Of Protein Phosphatase 2a (Pp2a) 1e-166
2nyl_A582 Crystal Structure Of Protein Phosphatase 2a (Pp2a) 7e-13
3c5w_A232 Complex Between Pp2a-Specific Methylesterase Pme-1 7e-36
2qna_A 762 Crystal Structure Of Human Importin-Beta (127-876) 3e-04
1qgk_A 876 Structure Of Importin Beta Bound To The Ibb Domain 3e-04
2p8q_A 876 Crystal Structure Of Human Importin Beta Bound To T 3e-04
1ibr_D462 Complex Of Ran With Importin Beta Length = 462 3e-04
1m5n_S485 Crystal Structure Of Heat Repeats (1-11) Of Importi 4e-04
1ukl_A 876 Crystal Structure Of Importin-Beta And Srebp-2 Comp 5e-04
>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human Pp2a, Pr65alpha Length = 588 Back     alignment and structure 
Iteration: 1

 Score =  600 bits (1547), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 296/480 (61%), Positives = 373/480 (77%), Gaps = 4/480 (0%)
Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 6   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 65
Query: 65  LAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVE 124
           LA+AE+LG F   VGG EY + LLPPLE+L TVEET VRDKAVESL  I  +    D+  
Sbjct: 66  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125
Query: 125 HFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAA 184
           HF+PLVKRLA G+WFT+R S+CGLF V YP    A+K ELR  +R LC DD PMVRR+AA
Sbjct: 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 185
Query: 185 TNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILP 244
           + LG+FA  +E  ++KSEI+ +F  L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct: 186 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 245
Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEVR AA+ KV
Sbjct: 246 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 305
Query: 305 TKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360
            + C  L+ +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGKD TIE LL
Sbjct: 306 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 365
Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 366 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 425
Query: 421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA   I+P+V
Sbjct: 426 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 485
>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human Pp2a, Pr65alpha Length = 588 Back     alignment and structure
>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound To Tumor- Inducing Toxins Length = 589 Back     alignment and structure
>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound To Tumor- Inducing Toxins Length = 589 Back     alignment and structure
>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a) Holoenzyme. Length = 589 Back     alignment and structure
>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a) Holoenzyme. Length = 589 Back     alignment and structure
>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction Length = 588 Back     alignment and structure
>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction Length = 588 Back     alignment and structure
>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein Phosphatase 2a And The Small T Antigen Of Sv40 Length = 580 Back     alignment and structure
>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein Phosphatase 2a And The Small T Antigen Of Sv40 Length = 580 Back     alignment and structure
>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55 Subunit Length = 582 Back     alignment and structure
>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55 Subunit Length = 582 Back     alignment and structure
>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) Holoenzyme With The Catalytic Subunit Carboxyl Terminus Truncated Length = 582 Back     alignment and structure
>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) Holoenzyme With The Catalytic Subunit Carboxyl Terminus Truncated Length = 582 Back     alignment and structure
>pdb|3C5W|A Chain A, Complex Between Pp2a-Specific Methylesterase Pme-1 And Pp2a Core Enzyme Length = 232 Back     alignment and structure
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In Complex With The Ibb-Domain Of Snurportin1 (1-65) Length = 762 Back     alignment and structure
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of Importin Alpha Length = 876 Back     alignment and structure
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The Snurportin1 Ibb- Domain Length = 876 Back     alignment and structure
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta Length = 462 Back     alignment and structure
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B Bound To The Non-Classical Nls(67-94) Of Pthrp Length = 485 Back     alignment and structure
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex Length = 876 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query513
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 1e-162
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 8e-65
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 2e-61
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 4e-58
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 6e-23
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 6e-18
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 1e-08
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 3e-04
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 7e-18
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 5e-15
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 8e-17
1u6g_C1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 4e-12
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 8e-16
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 6e-14
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 3e-11
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 5e-08
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 7e-13
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 3e-07
2db0_A253 253AA long hypothetical protein; heat repeats, hel 2e-12
2db0_A253 253AA long hypothetical protein; heat repeats, hel 4e-11
2db0_A253 253AA long hypothetical protein; heat repeats, hel 1e-09
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 9e-12
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 8e-06
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 9e-11
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 2e-10
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 1e-09
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 2e-09
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 1e-08
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 3e-06
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 2e-10
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 1e-09
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 3e-09
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 8e-09
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 4e-06
1qgr_A 876 Protein (importin beta subunit); transport recepto 1e-08
1qgr_A 876 Protein (importin beta subunit); transport recepto 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 2e-08
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 3e-04
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 2e-07
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 3e-06
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 2e-05
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 5e-05
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 1e-04
3oc3_A 800 Helicase MOT1, MOT1; regulation of transcription, 3e-06
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 4e-06
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 8e-05
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 7e-04
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 1e-05
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 1e-05
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 2e-05
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 2e-05
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 2e-05
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 2e-04
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 3e-04
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 6e-04
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 8e-04
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
 Score =  473 bits (1218), Expect = e-162
 Identities = 298/491 (60%), Positives = 375/491 (76%), Gaps = 4/491 (0%)

Query: 2   AMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDD 61
           A  D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+D
Sbjct: 3   ADGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED 62

Query: 62  EVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQD 121
           EVLLA+AE+LG F   VGG EY + LLPPLE+L TVEET VRDKAVESL  I  +    D
Sbjct: 63  EVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSD 122

Query: 122 VVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRR 181
           +  HF+PLVKRLA G+WFT+R S+CGLF V YP    A+K ELR  +R LC DD PMVRR
Sbjct: 123 LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRR 182

Query: 182 SAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAH 241
           +AA+ LG+FA  +E  ++KSEI+ +F  L  D+QDSVRLLAVE C  + +LL  +D  A 
Sbjct: 183 AAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEAL 242

Query: 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAA 301
           ++P +   ++DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEVR AA+
Sbjct: 243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAAS 302

Query: 302 GKVTKICRILNPELA----IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIE 357
            KV + C  L+ +      +  ILPC+KEL SD++QHV+SALA+VIMG++PILGKD TIE
Sbjct: 303 HKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIE 362

Query: 358 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAI 417
            LLP+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAI
Sbjct: 363 HLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAI 422

Query: 418 IEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIV 477
           IEY+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA   I+
Sbjct: 423 IEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATII 482

Query: 478 PQVALIKSSRN 488
           P+V  +    N
Sbjct: 483 PKVLAMSGDPN 493
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Length = 244 Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Length = 244 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Length = 800 Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Length = 240 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 618 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query513
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 100.0
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 100.0
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 100.0
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 100.0
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 100.0
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 100.0
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 100.0
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 100.0
1qgr_A 876 Protein (importin beta subunit); transport recepto 100.0
1qgr_A 876 Protein (importin beta subunit); transport recepto 99.97
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.94
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.94
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.94
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.93
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.92
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.92
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 99.91
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.91
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.91
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 99.91
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.9
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.9
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 99.9
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 99.9
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 99.9
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.89
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 99.88
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.88
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.85
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.84
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 99.82
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 99.82
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 99.81
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 99.81
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.8
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.79
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 99.79
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 99.78
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 99.77
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 99.73
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 99.72
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 99.71
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 99.71
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 99.7
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 99.7
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 99.7
2x19_B 963 Importin-13; nuclear transport, protein transport; 99.66
2x1g_F 971 Cadmus; transport protein, developmental protein, 99.66
2x1g_F 971 Cadmus; transport protein, developmental protein, 99.63
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 99.63
2x19_B 963 Importin-13; nuclear transport, protein transport; 99.62
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 99.59
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 99.59
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 99.57
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 99.57
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 99.57
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 99.55
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 99.55
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 99.55
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 99.55
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 99.53
4hat_C 1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 99.53
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 99.52
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 99.52
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 99.51
4ady_A 963 RPN2, 26S proteasome regulatory subunit RPN2; prot 99.48
4hat_C 1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 99.47
3nmz_A458 APC variant protein; protein-protein complex, arma 99.46
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 99.46
3ibv_A 980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 99.46
4ady_A 963 RPN2, 26S proteasome regulatory subunit RPN2; prot 99.45
3nmz_A458 APC variant protein; protein-protein complex, arma 99.44
3ibv_A 980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 99.42
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 99.4
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 99.37
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 99.36
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 99.34
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 99.28
3gjx_A 1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 99.26
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 99.22
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 99.22
2db0_A253 253AA long hypothetical protein; heat repeats, hel 99.21
3oc3_A 800 Helicase MOT1, MOT1; regulation of transcription, 99.2
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 99.18
3gjx_A 1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 99.18
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 99.17
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 99.15
2db0_A253 253AA long hypothetical protein; heat repeats, hel 99.14
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 99.14
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 99.1
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 99.09
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 99.06
3oc3_A 800 Helicase MOT1, MOT1; regulation of transcription, 99.02
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 99.01
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 99.0
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 98.99
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 98.98
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 98.98
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 98.97
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 98.95
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 98.94
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 98.93
1vsy_5997 Proteasome activator BLM10; 20S proteasome BLM10, 98.55
3grl_A651 General vesicular transport factor P115; vesicle t 98.39
1vsy_5997 Proteasome activator BLM10; 20S proteasome BLM10, 98.26
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 98.14
4gmo_A 684 Putative uncharacterized protein; ARM, heat, solen 98.13
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 98.1
3grl_A 651 General vesicular transport factor P115; vesicle t 98.07
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 97.93
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 97.77
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 97.58
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 97.46
1lsh_A 1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 97.42
4gmo_A 684 Putative uncharacterized protein; ARM, heat, solen 97.33
1lsh_A 1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 97.08
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 96.82
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 96.56
1upk_A341 MO25 protein; transferase, armadillo; HET: MSE; 1. 96.43
4atg_A196 TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton 95.92
4atg_A196 TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton 95.15
2b6c_A220 Hypothetical protein EF3068; structural genomis, D 94.85
2b6c_A220 Hypothetical protein EF3068; structural genomis, D 94.6
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 94.17
3jxy_A232 Alkylpurine DNA glycosylase ALKD; heat repeat, DNA 93.84
3g2s_A149 C-terminal fragment of sortilin-related receptor; 93.67
3jxy_A232 Alkylpurine DNA glycosylase ALKD; heat repeat, DNA 93.55
2npp_B449 PP2A, B subunit, serine/threonine-protein phosphat 92.92
1mhq_A148 ADP-ribosylation factor binding protein GGA2; supe 91.91
3g2s_A149 C-terminal fragment of sortilin-related receptor; 91.89
1mhq_A148 ADP-ribosylation factor binding protein GGA2; supe 91.75
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 91.44
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 91.17
1upk_A341 MO25 protein; transferase, armadillo; HET: MSE; 1. 91.01
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 90.96
1juq_A171 ADP-ribosylation factor binding protein GGA3; prot 90.26
1juq_A171 ADP-ribosylation factor binding protein GGA3; prot 90.18
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 88.82
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 87.09
3fga_B403 Serine/threonine-protein phosphatase 2A 56 kDa RE 86.38
1elk_A157 Target of MYB1; superhelix of helices, endocytosis 85.36
1w9c_A321 CRM1 protein, exportin 1; nuclear protein, nuclear 85.34
2jak_A392 Serine/threonine-protein phosphatase 2A 56 kDa RE 84.13
2jak_A392 Serine/threonine-protein phosphatase 2A 56 kDa RE 83.72
1elk_A157 Target of MYB1; superhelix of helices, endocytosis 83.56
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 80.51
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
Probab=100.00  E-value=4.9e-54  Score=439.56  Aligned_cols=500  Identities=60%  Similarity=0.972  Sum_probs=464.4

Q ss_pred             CCCCCCCcHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhhccCCchHHHHHHHHHhhcccccccCch
Q 010290            3 MIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLE   82 (513)
Q Consensus         3 ~~~~~~~~i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~   82 (513)
                      +.+|++++|..+++.|+++|+..|..|++.+..++..+|++..+++++|++.+..|+++++|..++..++.+...+++..
T Consensus         4 ~~~~~~~~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~~~~~~   83 (588)
T 1b3u_A            4 DGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPE   83 (588)
T ss_dssp             CTTTSSHHHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSGG
T ss_pred             ccCCCcCcHHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCcHH
Confidence            45788999999999999999999999999999999999999889999999988558889999999999999999888877


Q ss_pred             hhhhhhHHHHHhhccchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHHHHH
Q 010290           83 YANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKT  162 (513)
Q Consensus        83 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~~~~  162 (513)
                      +...+++.+..+..++++.||..|..+++.++..++++.+...++|.+..+..++++..|..++.+++.++...+...++
T Consensus        84 ~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~  163 (588)
T 1b3u_A           84 YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKA  163 (588)
T ss_dssp             GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHH
T ss_pred             HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHH
Confidence            88899999999989999999999999999999999998888899999999999999999999999999999999988889


Q ss_pred             HHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhhH
Q 010290          163 ELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHI  242 (513)
Q Consensus       163 ~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l  242 (513)
                      .+++.+..+++|+++.||..++++++.++...+++...+.++|.+..+++|+++.+|..|+.+++.++..++++...+.+
T Consensus       164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~  243 (588)
T 1b3u_A          164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALV  243 (588)
T ss_dssp             HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHT
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999999887778889999999999999999999999999999999887777889


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChH----HHHH
Q 010290          243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----LAIQ  318 (513)
Q Consensus       243 ~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~----~~~~  318 (513)
                      +|.+..+++|++|.+|.+++.+++.++..++.+.+.+.++|.+..+++|+++.||.+|+.+++.++..++.+    .+.+
T Consensus       244 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~  323 (588)
T 1b3u_A          244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMS  323 (588)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHH
T ss_pred             HHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHH
Confidence            999999999999999999999999999988776656789999999999999999999999999999988765    5678


Q ss_pred             hhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhhH
Q 010290          319 HILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL  398 (513)
Q Consensus       319 ~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~l  398 (513)
                      .++|.+..+++|++|.+|.+++.+++.+++.+|.+...+.++|.+..+++|+++.||.+++.+++.++..+|.+...+.+
T Consensus       324 ~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~  403 (588)
T 1b3u_A          324 QILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSL  403 (588)
T ss_dssp             THHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            89999999999999999999999999999999988777889999999999999999999999999999988877777889


Q ss_pred             HHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhHhhhhHH
Q 010290          399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVP  478 (513)
Q Consensus       399 ~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~~  478 (513)
                      +|.+..+++|++|++|..++.+++.++..+|.+++.+.++|.+..++.|+++.||..|+.+++.+...+|+++..+.++|
T Consensus       404 lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp  483 (588)
T 1b3u_A          404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIP  483 (588)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHH
T ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHH
Confidence            99999999999999999999999999999998887788999999999999999999999999999999999887889999


Q ss_pred             HHHhhhcCcchHHH-HHHHHHHHhc
Q 010290          479 QVALIKSSRNLVLN-SVLSLLKNAG  502 (513)
Q Consensus       479 ~L~~~~~~~~~~~r-~~~~~~~~i~  502 (513)
                      .|..+.++++|..| .++.+++.++
T Consensus       484 ~l~~~~~~~~~~~R~~a~~~l~~l~  508 (588)
T 1b3u_A          484 KVLAMSGDPNYLHRMTTLFCINVLS  508 (588)
T ss_dssp             HHHHTTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhCCCHHHHHHHHHHHHHHH
Confidence            99999999999888 5566666654
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* Back     alignment and structure
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} Back     alignment and structure
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} Back     alignment and structure
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17 Back     alignment and structure
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17 Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 Back     alignment and structure
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A* Back     alignment and structure
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Back     alignment and structure
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A* Back     alignment and structure
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Back     alignment and structure
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 Back     alignment and structure
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Back     alignment and structure
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* Back     alignment and structure
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Back     alignment and structure
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Back     alignment and structure
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Back     alignment and structure
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* Back     alignment and structure
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19 Back     alignment and structure
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 513
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 1e-100
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 3e-28
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 6e-28
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 1e-14
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 9e-14
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 5e-11
d2vglb_ 579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 1e-09
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 9e-14
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 3e-12
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 1e-10
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 6e-10
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 2e-08
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 2e-05
d1lrva_233 a.118.1.5 (A:) Leucine-rich repeat variant {Azotob 3e-09
d1lrva_233 a.118.1.5 (A:) Leucine-rich repeat variant {Azotob 3e-09
d1qbkb_ 888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 3e-08
d1qbkb_ 888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 4e-08
d1qbkb_888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 2e-06
d2bpta1861 a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( 1e-05
d2bpta1 861 a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( 1e-05
d1qgra_ 876 a.118.1.1 (A:) Importin beta {Human (Homo sapiens) 1e-05
d1oyza_276 a.118.1.16 (A:) Hypothetical protein YibA {Escheri 4e-04
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  310 bits (795), Expect = e-100
 Identities = 297/488 (60%), Positives = 374/488 (76%), Gaps = 4/488 (0%)

Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 6   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 65

Query: 65  LAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVE 124
           LA+AE+LG F   VGG EY + LLPPLE+L TVEET VRDKAVESL  I  +    D+  
Sbjct: 66  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125

Query: 125 HFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAA 184
           HF+PLVKRLA G+WFT+R S+CGLF V YP    A+K ELR  +R LC DD PMVRR+AA
Sbjct: 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 185

Query: 185 TNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILP 244
           + LG+FA  +E  ++KSEI+ +F  L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct: 186 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 245

Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEVR AA+ KV
Sbjct: 246 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 305

Query: 305 TKICRILNPELA----IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360
            + C  L+ +      +  ILPC+KEL SD++QHV+SALA+VIMG++PILGKD TIE LL
Sbjct: 306 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 365

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 366 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 425

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA   I+P+V
Sbjct: 426 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 485

Query: 481 ALIKSSRN 488
             +    N
Sbjct: 486 LAMSGDPN 493
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233 Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query513
d1b3ua_588 Constant regulatory domain of protein phosphatase 100.0
d1b3ua_588 Constant regulatory domain of protein phosphatase 100.0
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.93
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.92
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.92
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.92
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.91
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.9
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.89
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.88
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.88
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.88
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.85
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.84
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.8
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.8
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.77
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.77
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 99.7
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 99.69
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 99.68
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 99.67
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 99.64
d2vgla_ 584 Adaptin alpha C subunit N-terminal fragment {Mouse 99.56
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 99.34
d1wa5c_ 959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 99.28
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 99.2
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 99.16
d1wa5c_ 959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 99.13
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 99.13
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 99.07
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 99.06
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 98.85
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 98.8
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 98.19
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 97.94
d1upka_330 Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} 96.54
d2b6ca1213 Hypothetical protein EF3068 {Enterococcus faecalis 95.04
d1upka_330 Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} 92.72
d1dvpa1145 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 91.67
d1dvpa1145 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 90.98
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 90.98
d1mhqa_143 ADP-ribosylation factor binding protein Gga2 {Huma 90.94
d1ujka_145 ADP-ribosylation factor binding protein Gga1 {Huma 90.18
d1ujka_145 ADP-ribosylation factor binding protein Gga1 {Huma 89.86
d2b6ca1213 Hypothetical protein EF3068 {Enterococcus faecalis 89.82
d1mhqa_143 ADP-ribosylation factor binding protein Gga2 {Huma 89.02
d1juqa_151 ADP-ribosylation factor binding protein Gga3 {Huma 85.35
d2jaka1343 Serine/threonine-protein phosphatase 2A regulatory 80.52
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-54  Score=440.30  Aligned_cols=501  Identities=60%  Similarity=0.972  Sum_probs=468.6

Q ss_pred             CCCCCCCCcHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChHhhhhhhhhhhhhccCCchHHHHHHHHHhhcccccccCc
Q 010290            2 AMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGL   81 (513)
Q Consensus         2 ~~~~~~~~~i~~l~~~l~~~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~   81 (513)
                      ++.||+++||..+++.|+++|+.+|..|++.+..++..+|+++++++++|++.+..+++.+++..+++.++.+....|+.
T Consensus         3 ~~~~~~~~~i~~l~~~l~~~~~~~R~~a~~~l~~ia~~lg~~~~~~~lip~l~~~~~~~~ev~~~~~~~l~~~~~~~~~~   82 (588)
T d1b3ua_           3 ADGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGP   82 (588)
T ss_dssp             SCTTTSSHHHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSG
T ss_pred             CCcCcchhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCh
Confidence            57899999999999999999999999999999999999999999999999999955566789999999999999999988


Q ss_pred             hhhhhhhHHHHHhhccchhHHHHHHHHHHHHHHhhcChHHHHhhHHHHHHHhhcCCCcchhhhHHhhhHhhcCCCCHHHH
Q 010290           82 EYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALK  161 (513)
Q Consensus        82 ~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~l~~l~~d~~~~~R~~~~~~l~~~~~~~~~~~~  161 (513)
                      ++...+++.+..++.+++..||..|++++..++...+++.+...++|++..+.++++...|..++.+++.++...++...
T Consensus        83 ~~~~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~~  162 (588)
T d1b3ua_          83 EYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK  162 (588)
T ss_dssp             GGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHH
T ss_pred             hHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHHH
Confidence            99999999999999999999999999999999999999999999999999999998889999999999999999999988


Q ss_pred             HHHHHHHHHHcCCCchHHHHHHHHhHHHHHHHhhhhhhHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCChhhhhhh
Q 010290          162 TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAH  241 (513)
Q Consensus       162 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  241 (513)
                      .++++.+.++++|+++.||+.++.+++.+++..+.+...+.++|.+..+++|+++.||..++.++..++..++.+.....
T Consensus       163 ~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~  242 (588)
T d1b3ua_         163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEAL  242 (588)
T ss_dssp             HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHHHHHHH
Confidence            99999999999999999999999999999999998888889999999999999999999999999999999998888888


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCcHHHHHHHHHhHHHHHhhhChH----HHH
Q 010290          242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----LAI  317 (513)
Q Consensus       242 l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~----~~~  317 (513)
                      ++|.+..+++|++|.||..++++++.++..++.+.....++|.+..+++|++++||..|+.+++.++..++..    .+.
T Consensus       243 i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~  322 (588)
T d1b3ua_         243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIM  322 (588)
T ss_dssp             THHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHH
T ss_pred             HHHHHHHhcccccHHHHHHHHHhHHHHHHHhhhhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhH
Confidence            9999999999999999999999999999998887766789999999999999999999999999999877643    355


Q ss_pred             HhhhhhhhhhcCCCcHHHHHHHHHHHHHhchhhCHHHHHHhHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhhhhhhhhh
Q 010290          318 QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS  397 (513)
Q Consensus       318 ~~l~~~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~  397 (513)
                      +.++|.+.....|.++.+|..++.++..++..+|.+...+.++|.+...++|++++||..++.+++.+...+|.....+.
T Consensus       323 ~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~~~~~~  402 (588)
T d1b3ua_         323 SQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQS  402 (588)
T ss_dssp             HTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcchhhhhhH
Confidence            78889999999999999999999999999999999888889999999999999999999999999999998888888899


Q ss_pred             HHHHHHHhhcCCChhHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhChhhHhhhhH
Q 010290          398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIV  477 (513)
Q Consensus       398 l~~~l~~l~~~~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~i~  477 (513)
                      ++|.+..+.+|.+|++|.+++.+++.++..+|.+.+.+.+.|.+..++.|++..||.+|+++++.+...+|+++..+.++
T Consensus       403 ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~~~~~~i~  482 (588)
T d1b3ua_         403 LLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATII  482 (588)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTH
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            99999999999999999999999999999999998888999999999999999999999999999999999999889999


Q ss_pred             HHHHhhhcCcchHHH-HHHHHHHHhc
Q 010290          478 PQVALIKSSRNLVLN-SVLSLLKNAG  502 (513)
Q Consensus       478 ~~L~~~~~~~~~~~r-~~~~~~~~i~  502 (513)
                      |.+..+.++++|..| .++.++..++
T Consensus       483 ~~l~~~~~~~~~~~R~~~~~~l~~l~  508 (588)
T d1b3ua_         483 PKVLAMSGDPNYLHRMTTLFCINVLS  508 (588)
T ss_dssp             HHHHHTTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            999999999999999 4455555554
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure